BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013924
(434 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255550918|ref|XP_002516507.1| Protein pim1, putative [Ricinus communis]
gi|223544327|gb|EEF45848.1| Protein pim1, putative [Ricinus communis]
Length = 565
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/432 (74%), Positives = 356/432 (82%), Gaps = 8/432 (1%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++CSVKAGGMMSLAIDN GALWMWGNCP +S E GFSLVSSFTP PVWDF+GHTVVKV
Sbjct: 142 KVCSVKAGGMMSLAIDNLGALWMWGNCPQQNS--ESGFSLVSSFTPIPVWDFYGHTVVKV 199
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG+EHVVALVS GETYKGEDL+CYSWG NN+GQLGLGD ESR+ P+I+ETFNQDSPWAV
Sbjct: 200 ACGNEHVVALVSEGETYKGEDLLCYSWGNNNHGQLGLGDTESRVCPEIVETFNQDSPWAV 259
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
YEV+CG+FHTALLT +KRPND L+S CWTFGLGENGQLG GTTQ+AL PE VKELP+Y Y
Sbjct: 260 YEVSCGAFHTALLTCKKRPNDKLQSTCWTFGLGENGQLGLGTTQNALKPEPVKELPEYAY 319
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
L+SVDCGLFHTSVVSSAGDVWSWGM GLGLCP+A T +AGDAISP+LI+G K
Sbjct: 320 LISVDCGLFHTSVVSSAGDVWSWGMMNGLGLCPDARFTGTDAGDAISPLLITGT-----K 374
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQ 302
F DPVQ+ CGAAHTVLVT+ GYKLWSWGRGRSG LG GK ID P ++LWPPLTE K
Sbjct: 375 FNDPVQITCGAAHTVLVTNGGYKLWSWGRGRSGALGNGKEIDVLVPGVMLWPPLTEVVKN 434
Query: 303 DELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPF 362
E N +D + K E E + KLS AMEEMKLLQSKL++MERYA ILHGSIFGKPF
Sbjct: 435 QESNNSVEEDNLVKKGSEEVTEMENKLSLAMEEMKLLQSKLTIMERYAGILHGSIFGKPF 494
Query: 363 AAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEI 422
AE D+PISL++ FDI K WE MLESADRSKL+RLE FYRNMLAGVKDK MKRRIQEI
Sbjct: 495 -AEDDLPISLQNSDTFDIAKAWEEMLESADRSKLIRLEIFYRNMLAGVKDKKMKRRIQEI 553
Query: 423 VNECLHSSTIGK 434
+ E L S T GK
Sbjct: 554 IQEYLPSVTPGK 565
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 104/278 (37%), Gaps = 74/278 (26%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP-----KIIET 113
VV VA G H +AL G YSWG G+LG G + L P + E
Sbjct: 18 VVSVAAGEAHTLALTGDG--------CVYSWGRGTFGRLGTGLEKDELYPVKVKFDMCEE 69
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
F ++ + G++H+ L D CW + + ++A VP
Sbjct: 70 F-EERKLKFVGIAAGAYHSVALA------DDGSVWCWGY------NICILDPENAAVPRM 116
Query: 174 VKELPQYVY-----------------LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPN 216
+++ + +Y + SV G + + + G +W WG CP
Sbjct: 117 MEQFHELIYPGSATNESETNREVPLKVCSVKAGGMMSLAIDNLGALWMWGN------CPQ 170
Query: 217 ASLTRNEAG----DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG--YK----- 265
+ +E+G + +PI + H V+VACG H V + +G YK
Sbjct: 171 QN---SESGFSLVSSFTPIPVWDFYGH-----TVVKVACGNEHVVALVSEGETYKGEDLL 222
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQD 303
+SWG G LG G T P IV E F QD
Sbjct: 223 CYSWGNNNHGQLGLGDTESRVCPEIV------ETFNQD 254
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELN 306
V VA G AHT+ +T DG ++SWGRG G LGTG D P V + + EEF++ +L
Sbjct: 19 VSVAAGEAHTLALTGDGC-VYSWGRGTFGRLGTGLEKDELYPVKVKF-DMCEEFEERKLK 76
Query: 307 TGGL 310
G+
Sbjct: 77 FVGI 80
>gi|359476350|ref|XP_002283782.2| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Vitis vinifera]
Length = 564
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/431 (73%), Positives = 360/431 (83%), Gaps = 8/431 (1%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ +VKAGGMMSLAIDN G LWMWGN P S +G FSLVSSFTP PVWDFHGHTVVKV
Sbjct: 141 KVNAVKAGGMMSLAIDNLGGLWMWGNVP-ESSPDKGEFSLVSSFTPIPVWDFHGHTVVKV 199
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG+EHVVALVS GETYKG DL+CYSWG N +GQLGLGD E+RLRP++++TFN +S W V
Sbjct: 200 ACGNEHVVALVSHGETYKGGDLICYSWGNNGHGQLGLGDTENRLRPEVVKTFNLESLWEV 259
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
YEV CG+FHTALLTH+KRP+D LESMCWTFGLG+NGQLGHGTT+ +PE VK+LP++ +
Sbjct: 260 YEVACGAFHTALLTHKKRPSDTLESMCWTFGLGDNGQLGHGTTKGISLPEPVKDLPEHRF 319
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
LVSVDCGLFHTSVVSSAG+VWSWGMEKGLGLCP+AS T + GDA SP+L +G K
Sbjct: 320 LVSVDCGLFHTSVVSSAGEVWSWGMEKGLGLCPDASFTGTDPGDAPSPLL------YGSK 373
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQ 302
F+DPVQVACGAAHTVLV DDGYKLWSWGRGRSGVLG GKT+D FAP+ VLWPPLTE+FK+
Sbjct: 374 FRDPVQVACGAAHTVLVADDGYKLWSWGRGRSGVLGNGKTVDCFAPSTVLWPPLTEDFKE 433
Query: 303 DELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPF 362
E T + +I+ KD E E +++LS A EEMKLL SKLS MERYASILHGSIFGKPF
Sbjct: 434 LESGTTSGEKKIENKDPEEVTEMEKRLSLATEEMKLLHSKLSTMERYASILHGSIFGKPF 493
Query: 363 AAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEI 422
EQDIPISL++ GFFDI KEWENMLESADR KLV LE+FYRNMLAGVKDKLMKRRIQEI
Sbjct: 494 -EEQDIPISLQNSGFFDIAKEWENMLESADRGKLVMLEKFYRNMLAGVKDKLMKRRIQEI 552
Query: 423 VNECLHSSTIG 433
+ ECL G
Sbjct: 553 IKECLPPPATG 563
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 89/264 (33%), Gaps = 63/264 (23%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP---KIIETFN 115
+V VA G H + L G Y SWG G+LG G L P K
Sbjct: 17 IVSVAAGEAHSLVLTGDGRVY--------SWGRGTFGRLGTGSEADELFPVPIKFDSAEK 68
Query: 116 QDSPWAVY-EVTCGSFHTALLTHRKRPNDMLESMCWTF--------------------GL 154
DS + + G++H+ L D CW + GL
Sbjct: 69 SDSKGVKFVGIAAGAYHSVALA------DDGTVWCWGYNSCILSDDNCLVPHLLELFLGL 122
Query: 155 GENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLC 214
G G L + P +V +V G + + + G +W WG
Sbjct: 123 GSLGSLTDESDTKNKTPLKVN---------AVKAGGMMSLAIDNLGGLWMWGN------V 167
Query: 215 PNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG--YK-----LW 267
P +S + E S I HG V+VACG H V + G YK +
Sbjct: 168 PESSPDKGEFSLVSSFTPIPVWDFHG---HTVVKVACGNEHVVALVSHGETYKGGDLICY 224
Query: 268 SWGRGRSGVLGTGKTIDFFAPAIV 291
SWG G LG G T + P +V
Sbjct: 225 SWGNNGHGQLGLGDTENRLRPEVV 248
>gi|449461323|ref|XP_004148391.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus]
Length = 571
Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust.
Identities = 296/430 (68%), Positives = 349/430 (81%), Gaps = 2/430 (0%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+IC +KAGG +S AID+ GALWMWGNCP P E G S VSSFTPSPVW+FHGHTVVKV
Sbjct: 140 KICDIKAGGQISFAIDDLGALWMWGNCPKPSGENEVGLSYVSSFTPSPVWEFHGHTVVKV 199
Query: 63 ACGSEHVVALVSAGETY-KGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
ACG+EH+VALVS GETY K EDLVCYSWG N++GQLGLGD++SR P+IIETFN+ SPWA
Sbjct: 200 ACGNEHIVALVSVGETYNKAEDLVCYSWGDNSHGQLGLGDKDSRACPQIIETFNEASPWA 259
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
VYEV CG+FHTALL+H KRP D LES+CWTFGLGENGQLGHGTTQ+ +P+ VKELPQ V
Sbjct: 260 VYEVACGAFHTALLSHSKRPCDTLESVCWTFGLGENGQLGHGTTQNEFLPQPVKELPQSV 319
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
L+SV CGLFHTSVVSS GD+WSWGME+GLGLCP+AS T GDAISP+ I +G P
Sbjct: 320 SLISVACGLFHTSVVSSGGDLWSWGMERGLGLCPDASFTGTNTGDAISPLSIFCSGTESP 379
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFK 301
KF DPVQVACGAAHTV+V DGYKLWSWGRGRSGVLG GK +D F P +VLWPPL E+F
Sbjct: 380 KFLDPVQVACGAAHTVIVAHDGYKLWSWGRGRSGVLGNGKAVDCFTPTVVLWPPLNEDFD 439
Query: 302 QDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKP 361
Q+E T +D+++ +E E ++KL AMEE+KLL KLS+MERYAS LHGSIFGKP
Sbjct: 440 QEETETKCEEDKVEENKIEEVTEENKKLLMAMEEIKLLLDKLSIMERYASFLHGSIFGKP 499
Query: 362 FAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQE 421
F E DIP+SL++ G FDI KEWE+MLES+DRS L+RLE Y+NMLA +KDK++K+R+QE
Sbjct: 500 F-QEGDIPLSLRNSGSFDIAKEWESMLESSDRSNLLRLETVYQNMLASIKDKILKKRVQE 558
Query: 422 IVNECLHSST 431
+V E L S+T
Sbjct: 559 LVKEFLQSAT 568
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 95/263 (36%), Gaps = 60/263 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV ++ G H + L G Y SWG G+LG G L P ++ + +
Sbjct: 17 VVAISAGEAHTLVLTGDGRVY--------SWGRGMFGRLGTGAESDELFPVRVKLGSGEE 68
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH--GTTQSALVPEQVKE 176
V + GS+H+ LT + W +G GQLG G + + + +Q E
Sbjct: 69 NLKVVAIAAGSYHSLALTD--------DGSVWCWGYNIYGQLGFDGGNSATPCLLKQFLE 120
Query: 177 L--PQYVY------------LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
L P+ + + + G + + G +W WG CP S N
Sbjct: 121 LEPPESLTEESGSKSKGSLKICDIKAGGQISFAIDDLGALWMWGN------CPKPS-GEN 173
Query: 223 EAGDAISPILISGNGP------HGPKFQDPVQVACGAAHTVLVTDDGYKL--------WS 268
E G + +S P HG V+VACG H V + G +S
Sbjct: 174 EVGLS----YVSSFTPSPVWEFHG---HTVVKVACGNEHIVALVSVGETYNKAEDLVCYS 226
Query: 269 WGRGRSGVLGTGKTIDFFAPAIV 291
WG G LG G P I+
Sbjct: 227 WGDNSHGQLGLGDKDSRACPQII 249
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 234 SGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
SG P K V ++ G AHT+++T DG +++SWGRG G LGTG D P V
Sbjct: 4 SGTRPSSGKLSGKVVAISAGEAHTLVLTGDG-RVYSWGRGMFGRLGTGAESDELFPVRV 61
>gi|296081841|emb|CBI20846.3| unnamed protein product [Vitis vinifera]
Length = 441
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 308/432 (71%), Positives = 346/432 (80%), Gaps = 33/432 (7%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ +VKAGGMMSLAIDN G LWMWGN P S +G FSLVSSFTP PVWDFHGHTVVKV
Sbjct: 43 KVNAVKAGGMMSLAIDNLGGLWMWGNVP-ESSPDKGEFSLVSSFTPIPVWDFHGHTVVKV 101
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG+EHVVALVS GETYKG DL+CYSWG N +GQLGLGD E+RLRP++++TFN +S W V
Sbjct: 102 ACGNEHVVALVSHGETYKGGDLICYSWGNNGHGQLGLGDTENRLRPEVVKTFNLESLWEV 161
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
YEV CG+FHTALLTH+KRP+D LESMCWTFGLG+NGQLGHGTT+ +PE VK+LP++ +
Sbjct: 162 YEVACGAFHTALLTHKKRPSDTLESMCWTFGLGDNGQLGHGTTKGISLPEPVKDLPEHRF 221
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
LVSVDCGLFHTSVVSSAG+VWSWGMEKGLGLCP+AS T + GDA SP+L +G K
Sbjct: 222 LVSVDCGLFHTSVVSSAGEVWSWGMEKGLGLCPDASFTGTDPGDAPSPLL------YGSK 275
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQ 302
F+DPVQVACGAAHTVLV DDGYKLWSWGRGRSGVLG GKT+D FAP+ VLWPPLTE+FK+
Sbjct: 276 FRDPVQVACGAAHTVLVADDGYKLWSWGRGRSGVLGNGKTVDCFAPSTVLWPPLTEDFKE 335
Query: 303 DELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPF 362
E S +EMKLL SKLS MERYASILHGSIFGKPF
Sbjct: 336 LE-------------------------SGTTKEMKLLHSKLSTMERYASILHGSIFGKPF 370
Query: 363 AAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEI 422
EQDIPISL++ GFFDI KEWENMLESADR KLV LE+FYRNMLAGVKDKLMKRRIQEI
Sbjct: 371 -EEQDIPISLQNSGFFDIAKEWENMLESADRGKLVMLEKFYRNMLAGVKDKLMKRRIQEI 429
Query: 423 VNECLHSSTIGK 434
+ ECL G
Sbjct: 430 IKECLPPPATGN 441
>gi|449507254|ref|XP_004162977.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus]
Length = 581
Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust.
Identities = 298/440 (67%), Positives = 352/440 (80%), Gaps = 12/440 (2%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+IC +KAGG +S AID+ GALWMWGNCP P E G S VSSFTPSPVW+FHGHTVVKV
Sbjct: 140 KICDIKAGGQISFAIDDLGALWMWGNCPKPSGENEVGLSYVSSFTPSPVWEFHGHTVVKV 199
Query: 63 ACGSEHVVALVSAGETY-KGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
ACG+EH+VALVS GETY K EDLVCYSWG N++GQLGLGD++SR P+IIETFN+ SPWA
Sbjct: 200 ACGNEHIVALVSVGETYNKAEDLVCYSWGDNSHGQLGLGDKDSRACPQIIETFNEASPWA 259
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
VYEV CG+FHTALL+H KRP D LES+CWTFGLGENGQLGHGTTQ+ +P+ VKELPQ V
Sbjct: 260 VYEVACGAFHTALLSHSKRPCDTLESVCWTFGLGENGQLGHGTTQNEFLPQPVKELPQSV 319
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
L+SV CGLFHTSVVSS GD+WSWGME+GLGLCP+AS T GDAISP+ I +G P
Sbjct: 320 SLISVACGLFHTSVVSSGGDLWSWGMERGLGLCPDASFTGTNTGDAISPLSIFCSGTESP 379
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFK 301
KF DPVQVACGAAHTV+V DGYKLWSWGRGRSGVLG GK +D F P +VLWPPL E+F
Sbjct: 380 KFLDPVQVACGAAHTVIVAHDGYKLWSWGRGRSGVLGNGKAVDCFTPTVVLWPPLNEDFD 439
Query: 302 QDELNTGGLDDEI---KTKD-------LEGAEERDEKLSSAMEEMKLLQSKLSVMERYAS 351
Q+E T +D++ KT++ +E E ++KL AMEE+KLL KLS+MERYAS
Sbjct: 440 QEETETKCEEDKVEENKTEEDKVEENKIEEVTEENKKLLMAMEEIKLLLDKLSIMERYAS 499
Query: 352 ILHGSIFGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVK 411
LHGSIFGKPF E DIP+SL++ G FDI KEWE+MLES+DRS L+RLE Y+NMLA +K
Sbjct: 500 FLHGSIFGKPF-QEGDIPLSLRNSGSFDIAKEWESMLESSDRSNLLRLETVYQNMLASIK 558
Query: 412 DKLMKRRIQEIVNECLHSST 431
DK++K+R+QE+V E L S+T
Sbjct: 559 DKILKKRVQELVKEFLQSAT 578
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 95/261 (36%), Gaps = 56/261 (21%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV ++ G H + L G Y SWG G+LG G L P ++ + +
Sbjct: 17 VVAISAGEAHTLVLTGDGRVY--------SWGRGMFGRLGTGAESDELFPVRVKLGSGEE 68
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH--GTTQSALVPEQVKE 176
V + GS+H+ LT + W +G GQLG G + + + +Q E
Sbjct: 69 NLKVVAIAAGSYHSLALTD--------DGSVWCWGYNIYGQLGFDGGNSATPCLLKQFLE 120
Query: 177 L--PQYVY------------LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
L P+ + + + G + + G +W WG CP S N
Sbjct: 121 LEPPESLTEESGSKSKGSLKICDIKAGGQISFAIDDLGALWMWGN------CPKPS-GEN 173
Query: 223 EAGDAISPILISGNGP----HGPKFQDPVQVACGAAHTVLVTDDGYKL--------WSWG 270
E G +S + P HG V+VACG H V + G +SWG
Sbjct: 174 EVG--LSYVSSFTPSPVWEFHG---HTVVKVACGNEHIVALVSVGETYNKAEDLVCYSWG 228
Query: 271 RGRSGVLGTGKTIDFFAPAIV 291
G LG G P I+
Sbjct: 229 DNSHGQLGLGDKDSRACPQII 249
Score = 42.0 bits (97), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 234 SGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
SG P K V ++ G AHT+++T DG +++SWGRG G LGTG D P V
Sbjct: 4 SGTRPSSGKLSGKVVAISAGEAHTLVLTGDG-RVYSWGRGMFGRLGTGAESDELFPVRV 61
>gi|224141731|ref|XP_002324218.1| predicted protein [Populus trichocarpa]
gi|222865652|gb|EEF02783.1| predicted protein [Populus trichocarpa]
Length = 561
Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust.
Identities = 304/432 (70%), Positives = 351/432 (81%), Gaps = 5/432 (1%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+ICS+KAGGMMSLAID+ GALWMWGNCP + T S SSF P PV DFHGH+VVKV
Sbjct: 135 KICSIKAGGMMSLAIDDHGALWMWGNCPQQRNKTGSSISFESSFIPIPVRDFHGHSVVKV 194
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGSEHVVALVSAGETYK EDLVCYSWG NN+GQLGLGDRESR+ P+I+E FN+DS W V
Sbjct: 195 ACGSEHVVALVSAGETYKVEDLVCYSWGNNNHGQLGLGDRESRVHPEIVEMFNKDSSWDV 254
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
YEV CG++HTALLT ++R D LES+CWTFGLG+NGQLGHGTTQS L PE VKELP +
Sbjct: 255 YEVACGAYHTALLTRKRRTVDPLESVCWTFGLGDNGQLGHGTTQSVLKPEPVKELPGQAH 314
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
L+SVDCGLFHTSVVSS GDVWSWGMEKGLGLCP+AS T +AGDA SP+L+SG G GP
Sbjct: 315 LISVDCGLFHTSVVSSVGDVWSWGMEKGLGLCPDASFTGTDAGDAASPLLMSGYGVDGPI 374
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQ 302
F +P+QVACGAAHTVLV +DGYKLWSWGRG SGVLG GKTI+ FAP+ VLWPPLTE+FKQ
Sbjct: 375 FHNPIQVACGAAHTVLVANDGYKLWSWGRGTSGVLGNGKTINCFAPSFVLWPPLTEDFKQ 434
Query: 303 DELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPF 362
E T G + + + E D++LS AMEE++LLQSKLS+ME+Y +LHG +FG+PF
Sbjct: 435 PEPKTVGEE----SNGSKAVAETDKRLSLAMEEIELLQSKLSIMEQYGGMLHGLVFGRPF 490
Query: 363 AAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEI 422
QDIPISL++ G FDI KEWE+MLESAD SKL RLE FYR+M A +KDK+MKRRIQEI
Sbjct: 491 TY-QDIPISLQNSGNFDIAKEWESMLESADHSKLRRLELFYRDMRATIKDKIMKRRIQEI 549
Query: 423 VNECLHSSTIGK 434
+ ECL SST K
Sbjct: 550 IKECLPSSTTAK 561
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 98/271 (36%), Gaps = 58/271 (21%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN-QD 117
VV VA G H + L G Y SWG G+LG G L P ++ +
Sbjct: 11 VVSVATGEAHSLILTGDGRVY--------SWGKGMFGRLGTGSEVDELFPVQVKFETCVE 62
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGL-------GENGQLGHGTTQ---- 166
V G++H+ L D CW + + GEN + H Q
Sbjct: 63 KRLNFVGVAAGAYHSLALA------DDGSVWCWGYNIYGQLGVSGENYSMPHLMDQFLEL 116
Query: 167 ---SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE 223
+L+ + + + S+ G + + G +W WG CP RN+
Sbjct: 117 GSLGSLIDHSETKSEGPLKICSIKAGGMMSLAIDDHGALWMWGN------CPQ---QRNK 167
Query: 224 AGDAISPILISGNGP----HGPKFQDPVQVACGAAHTVLVTDDG--YKL-----WSWGRG 272
G +IS P HG V+VACG+ H V + G YK+ +SWG
Sbjct: 168 TGSSISFESSFIPIPVRDFHG---HSVVKVACGSEHVVALVSAGETYKVEDLVCYSWGNN 224
Query: 273 RSGVLGTGKTIDFFAPAIVLWPPLTEEFKQD 303
G LG G P IV E F +D
Sbjct: 225 NHGQLGLGDRESRVHPEIV------EMFNKD 249
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 29/146 (19%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCP----LPDSSTEGGFS-------LVSSF-TPS 49
+ + SV G + + + G +W WG PD+S G + L+S +
Sbjct: 313 AHLISVDCGLFHTSVVSSVGDVWSWGMEKGLGLCPDASFTGTDAGDAASPLLMSGYGVDG 372
Query: 50 PVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK 109
P++ H ++VACG+ H V + + G YK +SWG +G LG G + P
Sbjct: 373 PIF----HNPIQVACGAAHTVLVANDG--YK-----LWSWGRGTSGVLGNGKTINCFAPS 421
Query: 110 II------ETFNQDSPWAVYEVTCGS 129
+ E F Q P V E + GS
Sbjct: 422 FVLWPPLTEDFKQPEPKTVGEESNGS 447
>gi|356554552|ref|XP_003545609.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Glycine max]
Length = 576
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 294/430 (68%), Positives = 355/430 (82%), Gaps = 8/430 (1%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I VKAGGMMSL IDN GALW+WGNCP S EG FSL+S+FTP+PVWDFHGHTVVKV
Sbjct: 150 KIIDVKAGGMMSLCIDNLGALWLWGNCP--QQSKEGDFSLISNFTPTPVWDFHGHTVVKV 207
Query: 63 ACGSEHVVALVSAGETYKG-EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
ACG+EHVVALV+AGE+YKG +DLVCY+WG N++GQLGLGD ++R RP++++TF+ +SPWA
Sbjct: 208 ACGNEHVVALVTAGESYKGVDDLVCYTWGNNSHGQLGLGDTKNRPRPQVVKTFDLESPWA 267
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+YEV CG+FHTALLTH+KR +D LES CWTFGLG+NGQLG GTTQS +PE VKELPQ V
Sbjct: 268 IYEVACGAFHTALLTHKKRHSDTLESTCWTFGLGDNGQLGRGTTQSTSLPEPVKELPQNV 327
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+LVSVDCGLFHT VVSS GDVWSWGMEKGLGLC + S +GDA+SP LIS N PH P
Sbjct: 328 HLVSVDCGLFHTCVVSSDGDVWSWGMEKGLGLCSDDSNGGTHSGDALSPFLISCN-PHQP 386
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFK 301
KF PVQVACGAAHTV++ +G KLWSWGRGRSGVLG GKT+D + P IVLWPPL E+FK
Sbjct: 387 KFSQPVQVACGAAHTVIIAHEGCKLWSWGRGRSGVLGNGKTMDSYTPTIVLWPPLMEDFK 446
Query: 302 QDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKP 361
Q+EL + D+ +TK++ E DE+LSSA+ ++KLLQ+KLS++ERYASILH S+FG+P
Sbjct: 447 QEELYSSCEHDKNETKEV---TEIDERLSSALNQLKLLQTKLSIIERYASILHSSLFGEP 503
Query: 362 FAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQE 421
F EQD+P SLK+ G FDI KEWENMLE+AD +KL+ LE YRNM A VK+KLMKRRI+
Sbjct: 504 F-DEQDVPASLKNSGAFDIAKEWENMLEAADGTKLINLEMLYRNMHASVKEKLMKRRIKA 562
Query: 422 IVNECLHSST 431
I++ECL S+
Sbjct: 563 IIDECLLQSS 572
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 101/278 (36%), Gaps = 79/278 (28%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV +A G H + L G Y SWG G+LG G + P ++ +++
Sbjct: 14 VVAIAAGEAHTLLLTGDGRVY--------SWGRGILGRLGQGSEHDKHFPVEVKFGSEED 65
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-HG-------------- 163
+ + G++H+ L + W +G GQLG HG
Sbjct: 66 SVRIVGIAAGAYHSLALAD--------DGYVWCWGYNIYGQLGIHGEEFHGRKYTDGDYS 117
Query: 164 ----------------TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM 207
++ ++VPE E + ++ V G + + + G +W WG
Sbjct: 118 IVPCLLNKFLDLHPPDSSSISIVPE--TEGQASLKIIDVKAGGMMSLCIDNLGALWLWGN 175
Query: 208 EKGLGLCPNASLTRNEAGDAISPILISGNGP------HGPKFQDPVQVACGAAHTVLVTD 261
CP S + GD LIS P HG V+VACG H V +
Sbjct: 176 ------CPQQS----KEGDF---SLISNFTPTPVWDFHG---HTVVKVACGNEHVVALVT 219
Query: 262 DG--YK------LWSWGRGRSGVLGTGKTIDFFAPAIV 291
G YK ++WG G LG G T + P +V
Sbjct: 220 AGESYKGVDDLVCYTWGNNSHGQLGLGDTKNRPRPQVV 257
>gi|357466661|ref|XP_003603615.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
gi|355492663|gb|AES73866.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
Length = 563
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 290/433 (66%), Positives = 352/433 (81%), Gaps = 5/433 (1%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++C+VKAGGMMSLAIDN G LWMWGN +P S E G SLVSSFTP+PVWDFHG TVVKV
Sbjct: 135 EMCTVKAGGMMSLAIDNRGTLWMWGN--IPQESKESGISLVSSFTPTPVWDFHGRTVVKV 192
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG+EHVVALV+A ++++ EDL+CYSWG N++GQLGLGDR+SRL P++++ +++SPW +
Sbjct: 193 ACGNEHVVALVNAIDSHEDEDLLCYSWGYNSHGQLGLGDRQSRLHPEVVKILDEESPWTI 252
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
YEV CG+FHTALL H+K+P+ LESMCWTFGLGENGQLGHGTTQS L P VKELPQ ++
Sbjct: 253 YEVACGAFHTALLAHKKKPDATLESMCWTFGLGENGQLGHGTTQSTLFPTPVKELPQSIH 312
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTR-NEAGDAISPILISGNGPHGP 241
L+SVDCGLFHTSVVSS GDVWSWGMEKGLGLCP+A+ N GDA+SP+LIS N H P
Sbjct: 313 LISVDCGLFHTSVVSSTGDVWSWGMEKGLGLCPDANRAETNSGGDALSPLLISCN-LHQP 371
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFK 301
F PV+VACGAAHTV+V +G+K+WSWGRGRSGVLG GK +D + P IV WPP E +
Sbjct: 372 IFPGPVKVACGAAHTVVVAQEGHKVWSWGRGRSGVLGNGKEMDSYTPTIVPWPPTIEGLE 431
Query: 302 QDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKP 361
++ELN+ D++ K E E DEKLS+A+ E+KLLQ+KLS+ME+YASILHGSIFGKP
Sbjct: 432 EEELNSSDGQDKVAEKKPEIIAETDEKLSTALNELKLLQTKLSIMEKYASILHGSIFGKP 491
Query: 362 FAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQE 421
F EQDIP+SL + G DI KEWENMLE+AD KLV +E FYR+ML GVKDKLMKR+I+E
Sbjct: 492 F-NEQDIPVSLGNSGSMDIAKEWENMLEAADDRKLVTMEMFYRDMLTGVKDKLMKRKIKE 550
Query: 422 IVNECLHSSTIGK 434
I+ ECL SS + K
Sbjct: 551 IIKECLESSEVIK 563
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 98/274 (35%), Gaps = 70/274 (25%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+P D H +V VA G H + L ED Y WG G+LG G ++ L
Sbjct: 8 PNP--DNPSHKIVDVAAGESHTLLLT--------EDGSVYCWGRGMFGRLGNGSQKDELF 57
Query: 108 PKIIETFN----QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
PK + N QDS + + GS+HT L CW + H
Sbjct: 58 PKKLNFGNPNGTQDSV-KIVGIAAGSYHTLALAEDGS------VWCWE-------EDSHD 103
Query: 164 TTQSALVPEQVKELPQ-------------YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG 210
+ L+ ++ P + + +V G + + + G +W WG
Sbjct: 104 SLVPCLLSRFLELQPHNSSTDPSEAEDKASLEMCTVKAGGMMSLAIDNRGTLWMWG---- 159
Query: 211 LGLCPNASLTRNEAGDAISPILISGNGP------HGPKFQDPVQVACGAAHTVLVT---- 260
N E+G + L+S P HG + V+VACG H V +
Sbjct: 160 -----NIPQESKESGIS----LVSSFTPTPVWDFHG---RTVVKVACGNEHVVALVNAID 207
Query: 261 ---DDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D+ +SWG G LG G P +V
Sbjct: 208 SHEDEDLLCYSWGYNSHGQLGLGDRQSRLHPEVV 241
>gi|356507929|ref|XP_003522715.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Glycine max]
Length = 559
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 291/432 (67%), Positives = 341/432 (78%), Gaps = 30/432 (6%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+IC+VKAGGMMSLAIDN G LWMWGNCP S EGG +LVSSFTP+PVWDF GHTVVKV
Sbjct: 158 KICAVKAGGMMSLAIDNHGTLWMWGNCP--RQSKEGGLALVSSFTPTPVWDFQGHTVVKV 215
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG+EHVVALVSAGETY GEDLVCYSWG N+ GQLGLGDRESRL P+++ TF+++SP
Sbjct: 216 ACGNEHVVALVSAGETYNGEDLVCYSWGYNSRGQLGLGDRESRLHPEVVRTFDEESP--- 272
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
YEV CG+FHTALLT +K+P+D +ES CWTFGLG+NGQLGHGTTQS L P VKELPQ V
Sbjct: 273 YEVACGAFHTALLTRKKKPSDTVESTCWTFGLGDNGQLGHGTTQSTLFPTPVKELPQNVS 332
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
L+ VDCGLFHTSVVSS GDVWSWGMEKGLGLCP+AS ++GDA+SP L+S PH K
Sbjct: 333 LICVDCGLFHTSVVSSDGDVWSWGMEKGLGLCPDASRAGTDSGDALSPRLMSCQ-PHQLK 391
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQ 302
F DPV+VACGAAHTV+V GY++WSWGRGRSGVLG GK D + P VLWP E+ ++
Sbjct: 392 FPDPVKVACGAAHTVIVARKGYRMWSWGRGRSGVLGDGKGFDCYTPTAVLWPSTMEDSEE 451
Query: 303 DELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPF 362
+E+ SSA+ E+KLLQ+KLS+ME+YASILHGSIFGKPF
Sbjct: 452 EEVK-----------------------SSALNELKLLQTKLSIMEKYASILHGSIFGKPF 488
Query: 363 AAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEI 422
EQDIP+SL++ G FDI KEWE+MLE+AD+ KL+RLE FYR+ML GVKD+LMKRRI+EI
Sbjct: 489 -DEQDIPVSLRNSGSFDIAKEWESMLEAADQRKLIRLEMFYRDMLTGVKDELMKRRIKEI 547
Query: 423 VNECLHSSTIGK 434
V ECL SS + K
Sbjct: 548 VQECLQSSEVKK 559
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 96/277 (34%), Gaps = 74/277 (26%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV VA G H + L G Y WG G+LG G + L P + F +
Sbjct: 18 VVDVAAGEAHTLLLTGDGSVY--------CWGKGMFGRLGTGAEKDELLP-VQLNFGYPN 68
Query: 119 P------WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG----------H 162
P + + + G++H+ L + W +G GQLG +
Sbjct: 69 PNGTEGTFKIVGIAAGAYHSLALAE--------DGAVWCWGYNFYGQLGINGEESHDNEY 120
Query: 163 GTTQSALVPEQVKELPQY------------------VYLVSVDCGLFHTSVVSSAGDVWS 204
++LVP + + + + + +V G + + + G +W
Sbjct: 121 AVGDNSLVPRILNKFLELHPPDSSSSGVSEAESKTPLKICAVKAGGMMSLAIDNHGTLWM 180
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP-KFQ--DPVQVACGAAHTVLVTD 261
WG CP S E G A L+S P FQ V+VACG H V +
Sbjct: 181 WGN------CPRQS---KEGGLA----LVSSFTPTPVWDFQGHTVVKVACGNEHVVALVS 227
Query: 262 DGYKL-------WSWGRGRSGVLGTGKTIDFFAPAIV 291
G +SWG G LG G P +V
Sbjct: 228 AGETYNGEDLVCYSWGYNSRGQLGLGDRESRLHPEVV 264
>gi|99646741|emb|CAK22423.1| regulator of chromosome condensation family protein [Beta vulgaris]
Length = 573
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 277/429 (64%), Positives = 339/429 (79%), Gaps = 3/429 (0%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++C+++AGGMMS+AIDN GALWMWGN P S + FSL S TP P++DF+GHTVVKV
Sbjct: 142 KVCAIEAGGMMSVAIDNLGALWMWGNIPQQSSPEDDAFSLGSVPTPVPMFDFYGHTVVKV 201
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG+EH+VALVSAGE + G+DLVCY+WG N +GQLGLGD ESRL P+ + F++ S W
Sbjct: 202 ACGNEHIVALVSAGEKHVGDDLVCYTWGNNMHGQLGLGDTESRLHPQAVAQFSEGSAWRA 261
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
YEV CG+FHT +L+ +KRP+D LES+CWTFGLGENGQLGHGTTQS +PE +ELP+ Y
Sbjct: 262 YEVACGAFHTVVLSLKKRPSDTLESVCWTFGLGENGQLGHGTTQSVSLPEPARELPENAY 321
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
VSVDCGLFHTSVVSSAG+VWSWGMEKGLGLCP+ S + + GDAI P+ I N P GPK
Sbjct: 322 FVSVDCGLFHTSVVSSAGEVWSWGMEKGLGLCPDVSFSGIDHGDAILPLQILCNRPQGPK 381
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQ 302
F +PV +ACGAAHTVLV DDGYKLWSWGRGRSGVLG GK D ++P++VLWPPL+E+FK
Sbjct: 382 FPEPVGIACGAAHTVLVADDGYKLWSWGRGRSGVLGDGKGSDSYSPSMVLWPPLSEDFK- 440
Query: 303 DELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPF 362
D LN+ + + K E E DEK+S +EEMK LQSKLSVMERY +ILHGS+FG+PF
Sbjct: 441 DGLNSPDTESKKPEKKAE-VTEVDEKVSPTLEEMKRLQSKLSVMERYVTILHGSLFGRPF 499
Query: 363 AAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEI 422
E++IP SL + FD+++ W+ MLE+ADR +L RLE FY NML GVKDK+MKR+IQEI
Sbjct: 500 -EEREIPASLLESDSFDVSEAWKTMLEAADRKELRRLEMFYGNMLDGVKDKIMKRKIQEI 558
Query: 423 VNECLHSST 431
V ECL SS+
Sbjct: 559 VRECLQSSS 567
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 95/270 (35%), Gaps = 67/270 (24%)
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
H ++ V G H +AL G+ + SWG G+LG G P I+ N
Sbjct: 13 HKIIAVTAGEAHTLALSEVGKVF--------SWGRGTFGRLGNGSESDESFPVPIKLDND 64
Query: 117 DS----PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPE 172
S P + G++H+ L + W +G QLG + VP
Sbjct: 65 GSLNEKPLNFVGIAAGAYHSLALAD--------DGSVWCWGYNTYSQLGF-DGDNVSVPR 115
Query: 173 QVKELPQY-----------------VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCP 215
Q+ +L Q + + +++ G + + + G +W WG P
Sbjct: 116 QLDKLLQLDSPRSLGDDSKGKSKHPLKVCAIEAGGMMSVAIDNLGALWMWGN------IP 169
Query: 216 NASLTRNEA---GDAISPILISGNGPHGPKF----QDPVQVACGAAHTVLVTDDGYK--- 265
S ++A G +P+ P F V+VACG H V + G K
Sbjct: 170 QQSSPEDDAFSLGSVPTPV---------PMFDFYGHTVVKVACGNEHIVALVSAGEKHVG 220
Query: 266 ----LWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WG G LG G T P V
Sbjct: 221 DDLVCYTWGNNMHGQLGLGDTESRLHPQAV 250
>gi|326494692|dbj|BAJ94465.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326532960|dbj|BAJ89325.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 566
Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/437 (57%), Positives = 326/437 (74%), Gaps = 15/437 (3%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ SVKAGGMMS AID+ GALWMWGNCP + +G F + ++ P PVWDFHGHTVVKV
Sbjct: 134 KLSSVKAGGMMSFAIDSLGALWMWGNCP--QQTDDGEFYIAATSAPLPVWDFHGHTVVKV 191
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG+EHVVA VSAGETY G DLVCYSWG NN+GQLGLGD+ESR RP +I F + S W V
Sbjct: 192 ACGNEHVVAAVSAGETYTGGDLVCYSWGNNNHGQLGLGDKESRSRPMLIPEFGEGSSWEV 251
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
YE+ CG++HTA+LT++K + LES CWTFG+G+NGQLGHGTT + P+ V LP +
Sbjct: 252 YEIACGAWHTAVLTNKKSFDQDLESRCWTFGIGDNGQLGHGTTATTCSPQPVDGLPTGSF 311
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
L+S+DCGLFHT+VVSS G+VW WGME+GLGLCP+AS + +AGDA+ PI + +G K
Sbjct: 312 LISLDCGLFHTAVVSSDGEVWCWGMERGLGLCPDASFSGMDAGDALHPIRVQSPETNGFK 371
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFK- 301
F PVQVACGAAHTVLV DGY++W+WGRGRSGVLG +T D + P +V+WPPL E F+
Sbjct: 372 FLGPVQVACGAAHTVLVAGDGYRMWAWGRGRSGVLGRDQTTDSYTPCVVMWPPLDENFQE 431
Query: 302 ----QDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSI 357
Q + +T +D T E + KLS+A EE++ L+SKL++MERYA+ILH SI
Sbjct: 432 IHGDQAQASTSRANDRTNT-------ELELKLSAASEELQFLRSKLTLMERYANILHISI 484
Query: 358 FGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKR 417
F KP E+ +P SL++ FDI KE+EN+L+S+D +L RLE FYR+ML+GVKDKL+KR
Sbjct: 485 FRKPM-DERTLPRSLQESAVFDIRKEFENILDSSDTDELARLEMFYRSMLSGVKDKLLKR 543
Query: 418 RIQEIVNECLHSSTIGK 434
+++ +V EC+ S + G+
Sbjct: 544 KVEVMVQECIVSLSAGR 560
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 108/262 (41%), Gaps = 54/262 (20%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ-DS 118
V VA G+ H +AL G +SWG N GQLG G+ E+ L P +++ F S
Sbjct: 66 VAVAAGAYHSLALDDEGS--------LWSWGYNIYGQLGYGE-ENSLSPCLVDGFQDLGS 116
Query: 119 PWAVYEVTCGSF-HTALLTHRKRPNDMLESMCWTFGLGENGQL---GHGTTQSA----LV 170
P + + + T L + M+ +F + G L G+ Q+ +
Sbjct: 117 PETLQDEAQDTLARTPLKLSSVKAGGMM-----SFAIDSLGALWMWGNCPQQTDDGEFYI 171
Query: 171 PEQVKELPQYVY----LVSVDCGLFHTSVVSSAGDV--------WSWGMEK--GLGLCPN 216
LP + + +V V CG H SAG+ +SWG LGL
Sbjct: 172 AATSAPLPVWDFHGHTVVKVACGNEHVVAAVSAGETYTGGDLVCYSWGNNNHGQLGLGDK 231
Query: 217 ASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT-------DDGYKLWSW 269
S +R P+LI G G ++ ++ACGA HT ++T D + W++
Sbjct: 232 ESRSR--------PMLIPEFG-EGSSWE-VYEIACGAWHTAVLTNKKSFDQDLESRCWTF 281
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T +P V
Sbjct: 282 GIGDNGQLGHGTTATTCSPQPV 303
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 91/262 (34%), Gaps = 55/262 (20%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V VA G H +AL GE Y SWG G+LG G P + +
Sbjct: 5 VSAVAAGEAHTLALTGDGEVY--------SWGRGTFGRLGTGREADVHVPTAVLPAVAAA 56
Query: 119 PWA-----VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS---ALV 170
V G++H+ L E W++G GQLG+G S LV
Sbjct: 57 AAGRPRPRFVAVAAGAYHSLALDD--------EGSLWSWGYNIYGQLGYGEENSLSPCLV 108
Query: 171 --------PEQVKELPQ------YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPN 216
PE +++ Q + L SV G + + S G +W WG CP
Sbjct: 109 DGFQDLGSPETLQDEAQDTLARTPLKLSSVKAGGMMSFAIDSLGALWMWGN------CPQ 162
Query: 217 ASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL-------WSW 269
+ E A + + HG V+VACG H V G +SW
Sbjct: 163 QT-DDGEFYIAATSAPLPVWDFHGHTV---VKVACGNEHVVAAVSAGETYTGGDLVCYSW 218
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G LG G P ++
Sbjct: 219 GNNNHGQLGLGDKESRSRPMLI 240
>gi|357136240|ref|XP_003569713.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Brachypodium
distachyon]
Length = 564
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 255/437 (58%), Positives = 331/437 (75%), Gaps = 15/437 (3%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ SVKAGGMMS AID+ GALWMWGNCP + +G F + +S P PVWDFHGHTVVKV
Sbjct: 132 KLSSVKAGGMMSFAIDSLGALWMWGNCP--QQTDDGEFCIAASSVPLPVWDFHGHTVVKV 189
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG+EHVVA VSAGETY G DLVCYSWG NN+GQLGLGD+ESR RP II F++ S W V
Sbjct: 190 ACGNEHVVAAVSAGETYAGGDLVCYSWGNNNHGQLGLGDKESRSRPVIISEFSESSSWEV 249
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
YE+ CG++HTA+LT++K + LES CWTFG+G+NGQLGHGTT + + P+ V LP +
Sbjct: 250 YEIACGAWHTAVLTNKKSFDQDLESRCWTFGIGDNGQLGHGTTATIVSPQPVDGLPTGSF 309
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
L+S+DCGLFHT+VVSS G+VW WGME+GLGLCP+AS + +AGDA+ PI + +G K
Sbjct: 310 LISLDCGLFHTAVVSSDGEVWCWGMERGLGLCPDASFSGIDAGDALYPIRVQSPETNGFK 369
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFK- 301
F PVQV CGAAHTVLV DGY++W+WGRGRSGVLG +T D + P +V+WPPL E F+
Sbjct: 370 FLGPVQVTCGAAHTVLVAGDGYRMWAWGRGRSGVLGRDQTTDSYTPCVVMWPPLDENFQE 429
Query: 302 ----QDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSI 357
Q + +T G++D T E ++KLS+A EE++ L+SKL++MERYA+ILH SI
Sbjct: 430 IHENQGQASTSGVNDRSST-------ELEQKLSTASEELQFLRSKLTLMERYANILHISI 482
Query: 358 FGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKR 417
F KP E+ +P SL++ FDI KE+EN+L+++D +L RLE FYR+ML+GVKDKL+KR
Sbjct: 483 FRKPM-DERTLPRSLQESAVFDIRKEFENILDASDTDELSRLEMFYRSMLSGVKDKLLKR 541
Query: 418 RIQEIVNECLHSSTIGK 434
++QE+V EC+ S + G+
Sbjct: 542 KVQEMVQECIVSLSAGR 558
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 90/261 (34%), Gaps = 55/261 (21%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF---- 114
V VA G H +AL GE Y SWG G+LG G P +
Sbjct: 5 VSAVAAGEAHTLALTCNGEVY--------SWGRGTFGRLGTGSEGDEHVPTAVAPAVAVG 56
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL----- 169
+ P V G++H+ L E W++G GQLG+G S
Sbjct: 57 GRPRP-KFAAVAAGAYHSLALDD--------EGSLWSWGYNIYGQLGYGEENSLFPCLVE 107
Query: 170 ------VPEQVKELPQY------VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNA 217
PE ++ Q + L SV G + + S G +W WG CP
Sbjct: 108 RFQDLGSPETLQREAQETLAQTPLKLSSVKAGGMMSFAIDSLGALWMWGN------CPQQ 161
Query: 218 SLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL-------WSWG 270
+ E A S + + HG V+VACG H V G +SWG
Sbjct: 162 T-DDGEFCIAASSVPLPVWDFHG---HTVVKVACGNEHVVAAVSAGETYAGGDLVCYSWG 217
Query: 271 RGRSGVLGTGKTIDFFAPAIV 291
G LG G P I+
Sbjct: 218 NNNHGQLGLGDKESRSRPVII 238
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
+V G HT ++ G+V+SWG G S A++P + G P PKF
Sbjct: 7 AVAAGEAHTLALTCNGEVYSWG-RGTFGRLGTGSEGDEHVPTAVAPAVAVGGRPR-PKF- 63
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFK 301
VA GA H++ + D+G LWSWG G LG G+ F P L E F+
Sbjct: 64 --AAVAAGAYHSLALDDEG-SLWSWGYNIYGQLGYGEENSLF-------PCLVERFQ 110
>gi|222619187|gb|EEE55319.1| hypothetical protein OsJ_03316 [Oryza sativa Japonica Group]
Length = 547
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 250/437 (57%), Positives = 325/437 (74%), Gaps = 15/437 (3%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ SVKAGGMMS AID GA+WMWGNCP + G F + S P PVWDFHGHTVVKV
Sbjct: 118 KLSSVKAGGMMSFAIDTLGAMWMWGNCP--QQTDAGEFCIAPSCVPLPVWDFHGHTVVKV 175
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG+EHVVA VSAGETY G DLVCY+WG NN+GQLGLGD+ESR RP +I F++ S W V
Sbjct: 176 ACGNEHVVAAVSAGETYTGGDLVCYAWGNNNHGQLGLGDKESRSRPVLISAFSEGSSWEV 235
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
YE+ CG++HTA+LT++K + LES CWTFGLG+NGQLGHGTT + P+ V LP +
Sbjct: 236 YEIACGTWHTAVLTNKKSFDVDLESRCWTFGLGDNGQLGHGTTATICSPQPVDGLPTGSF 295
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
L+S+DCGLFHT+VVSS G+VW WGME+GLGLCP+AS + ++GDA+ PI + +G K
Sbjct: 296 LISLDCGLFHTTVVSSDGEVWCWGMERGLGLCPDASFSGVDSGDALRPIRVQSPETNGFK 355
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQ 302
F VQV CGAAHTVLV DGY++W+WGRGRSGVLG +T D + P +V+WPPL E F++
Sbjct: 356 FLGAVQVTCGAAHTVLVAGDGYRMWAWGRGRSGVLGRNQTADSYIPCVVMWPPLDENFQE 415
Query: 303 -----DELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSI 357
+ +T G++D + E ++KLS+A EE++ L+SKL++MERYA+ILH SI
Sbjct: 416 IHEDRAQASTSGVND-------RNSAELEQKLSAASEELEFLRSKLTLMERYANILHISI 468
Query: 358 FGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKR 417
F KP E+ +P SL++ FDI KE+EN+L++A +L RLE FYR+ML+GVKDKL+KR
Sbjct: 469 FRKPL-DERTLPRSLQESPVFDIRKEFENILDTAGTDELNRLEIFYRSMLSGVKDKLLKR 527
Query: 418 RIQEIVNECLHSSTIGK 434
R+QE+V EC+ S + G+
Sbjct: 528 RVQEMVQECIVSLSSGR 544
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 91/244 (37%), Gaps = 35/244 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV VA G H +AL GE Y SWG G+LG G P ++ +
Sbjct: 5 VVAVAAGEAHTLALTGDGEVY--------SWGRGMFGRLGTGREADEHVPTVVAAGGRPR 56
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQL-GHGTTQSALVPEQVKEL 177
P V V G++H+ L + L T GL + ++ H T + Q
Sbjct: 57 PRFV-AVASGAYHSLALDDHANISVPLNFCAVTTGLFDMMKIWVHPETLQS--EAQNSST 113
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD---AISPILIS 234
+ L SV G + + + G +W WG CP + +AG+ A S + +
Sbjct: 114 QSSLKLSSVKAGGMMSFAIDTLGAMWMWGN------CPQ----QTDAGEFCIAPSCVPLP 163
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL-------WSWGRGRSGVLGTGKTIDFFA 287
HG V+VACG H V G ++WG G LG G
Sbjct: 164 VWDFHG---HTVVKVACGNEHVVAAVSAGETYTGGDLVCYAWGNNNHGQLGLGDKESRSR 220
Query: 288 PAIV 291
P ++
Sbjct: 221 PVLI 224
>gi|218188983|gb|EEC71410.1| hypothetical protein OsI_03583 [Oryza sativa Indica Group]
Length = 557
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 250/437 (57%), Positives = 325/437 (74%), Gaps = 15/437 (3%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ SVKAGGMMS AID GA+WMWGNCP + G F + S P PVWDFHGHTVVKV
Sbjct: 128 KLSSVKAGGMMSFAIDTLGAMWMWGNCP--QQTDAGEFCIAPSCVPLPVWDFHGHTVVKV 185
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG+EHVVA VSAGETY G DLVCY+WG NN+GQLGLGD+ESR RP +I F++ S W V
Sbjct: 186 ACGNEHVVAAVSAGETYTGGDLVCYAWGNNNHGQLGLGDKESRSRPVLISAFSEGSSWEV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
YE+ CG++HTA+LT++K + LES CWTFGLG+NGQLGHGTT + P+ V LP +
Sbjct: 246 YEIACGAWHTAVLTNKKSFDVDLESRCWTFGLGDNGQLGHGTTATICSPQPVDGLPTGSF 305
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
L+S+DCGLFHT+VVSS G+VW WGME+GLGLCP+AS + ++GDA+ PI + +G K
Sbjct: 306 LISLDCGLFHTTVVSSDGEVWCWGMERGLGLCPDASFSGVDSGDALRPIRVQSPETNGFK 365
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQ 302
F VQV CGAAHTVLV DGY++W+WGRGRSGVLG +T D + P +V+WPPL E F++
Sbjct: 366 FLGAVQVTCGAAHTVLVAGDGYRMWAWGRGRSGVLGRNQTADSYIPCVVMWPPLDENFQE 425
Query: 303 -----DELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSI 357
+ +T G++D + E ++KLS+A EE++ L+SKL++MERYA+ILH SI
Sbjct: 426 IHEDRAQASTSGVND-------RNSAELEQKLSAASEELEFLRSKLTLMERYANILHISI 478
Query: 358 FGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKR 417
F KP E+ +P SL++ FDI KE+EN+L++A +L RLE FYR+ML+GVKDKL+KR
Sbjct: 479 FRKPL-DERTLPRSLQESPVFDIRKEFENILDTAGTDELNRLEIFYRSMLSGVKDKLLKR 537
Query: 418 RIQEIVNECLHSSTIGK 434
R+QE+V EC+ S + G+
Sbjct: 538 RVQEMVQECIVSLSSGR 554
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 131/327 (40%), Gaps = 71/327 (21%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK- 61
++ +V AG +LA+ G ++ WG G F + + + D H TVV
Sbjct: 4 KVVAVAAGEAHTLALTGDGEVYSWG---------RGMFGRLGTGREA---DEHVPTVVAA 51
Query: 62 ----------VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
VA G+ H +AL G + SWG N GQLG G+ E+ L P ++
Sbjct: 52 GGRPRPRFVAVASGAYHSLALDDEGSLW--------SWGYNIYGQLGYGE-ENSLFPCLV 102
Query: 112 ETFNQD--SPWAVY-EVTCGSFHTALLTHRKRPNDMLESMCWTFG-------LGENGQLG 161
E F QD SP + E S ++L + M+ T G + G
Sbjct: 103 ERF-QDLGSPETLQSEAQNSSTQSSLKLSSVKAGGMMSFAIDTLGAMWMWGNCPQQTDAG 161
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS--------WGMEK--GL 211
+ VP V + + +V V CG H SAG+ ++ WG L
Sbjct: 162 EFCIAPSCVPLPVWDFHGHT-VVKVACGNEHVVAAVSAGETYTGGDLVCYAWGNNNHGQL 220
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT-------DDGY 264
GL S +R P+LIS G ++ ++ACGA HT ++T D
Sbjct: 221 GLGDKESRSR--------PVLISAFS-EGSSWE-VYEIACGAWHTAVLTNKKSFDVDLES 270
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ W++G G +G LG G T +P V
Sbjct: 271 RCWTFGLGDNGQLGHGTTATICSPQPV 297
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 21/121 (17%)
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V+V G HT ++ G+V+SWG M LG T EA + + ++ +G P
Sbjct: 5 VVAVAAGEAHTLALTGDGEVYSWGRGMFGRLG-------TGREADEHVPTVVAAGGRPR- 56
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEF 300
P+F V VA GA H++ + D+G LWSWG G LG G+ F P L E F
Sbjct: 57 PRF---VAVASGAYHSLALDDEG-SLWSWGYNIYGQLGYGEENSLF-------PCLVERF 105
Query: 301 K 301
+
Sbjct: 106 Q 106
>gi|115439669|ref|NP_001044114.1| Os01g0725600 [Oryza sativa Japonica Group]
gi|20161135|dbj|BAB90063.1| BNR repeat domain protein-like [Oryza sativa Japonica Group]
gi|113533645|dbj|BAF06028.1| Os01g0725600 [Oryza sativa Japonica Group]
gi|215715258|dbj|BAG95009.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 557
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 250/437 (57%), Positives = 325/437 (74%), Gaps = 15/437 (3%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ SVKAGGMMS AID GA+WMWGNCP + G F + S P PVWDFHGHTVVKV
Sbjct: 128 KLSSVKAGGMMSFAIDTLGAMWMWGNCP--QQTDAGEFCIAPSCVPLPVWDFHGHTVVKV 185
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG+EHVVA VSAGETY G DLVCY+WG NN+GQLGLGD+ESR RP +I F++ S W V
Sbjct: 186 ACGNEHVVAAVSAGETYTGGDLVCYAWGNNNHGQLGLGDKESRSRPVLISAFSEGSSWEV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
YE+ CG++HTA+LT++K + LES CWTFGLG+NGQLGHGTT + P+ V LP +
Sbjct: 246 YEIACGTWHTAVLTNKKSFDVDLESRCWTFGLGDNGQLGHGTTATICSPQPVDGLPTGSF 305
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
L+S+DCGLFHT+VVSS G+VW WGME+GLGLCP+AS + ++GDA+ PI + +G K
Sbjct: 306 LISLDCGLFHTTVVSSDGEVWCWGMERGLGLCPDASFSGVDSGDALRPIRVQSPETNGFK 365
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQ 302
F VQV CGAAHTVLV DGY++W+WGRGRSGVLG +T D + P +V+WPPL E F++
Sbjct: 366 FLGAVQVTCGAAHTVLVAGDGYRMWAWGRGRSGVLGRNQTADSYIPCVVMWPPLDENFQE 425
Query: 303 -----DELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSI 357
+ +T G++D + E ++KLS+A EE++ L+SKL++MERYA+ILH SI
Sbjct: 426 IHEDRAQASTSGVND-------RNSAELEQKLSAASEELEFLRSKLTLMERYANILHISI 478
Query: 358 FGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKR 417
F KP E+ +P SL++ FDI KE+EN+L++A +L RLE FYR+ML+GVKDKL+KR
Sbjct: 479 FRKPL-DERTLPRSLQESPVFDIRKEFENILDTAGTDELNRLEIFYRSMLSGVKDKLLKR 537
Query: 418 RIQEIVNECLHSSTIGK 434
R+QE+V EC+ S + G+
Sbjct: 538 RVQEMVQECIVSLSSGR 554
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 130/327 (39%), Gaps = 71/327 (21%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK- 61
++ +V AG +LA+ G ++ WG G F + + + D H TVV
Sbjct: 4 KVVAVAAGEAHTLALTGDGEVYSWG---------RGMFGRLGTGREA---DEHVPTVVAA 51
Query: 62 ----------VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
VA G+ H +AL G + SWG N GQLG G+ E+ L P ++
Sbjct: 52 GGRPRPRFVAVASGAYHSLALDDEGSLW--------SWGYNIYGQLGYGE-ENSLFPCLV 102
Query: 112 ETFNQD--SPWAVY-EVTCGSFHTALLTHRKRPNDMLESMCWTFG-------LGENGQLG 161
E F QD SP + E S ++L + M+ T G + G
Sbjct: 103 ERF-QDLGSPETLQSEAQNSSTQSSLKLSSVKAGGMMSFAIDTLGAMWMWGNCPQQTDAG 161
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS--------WGMEK--GL 211
+ VP V + + +V V CG H SAG+ ++ WG L
Sbjct: 162 EFCIAPSCVPLPVWDFHGHT-VVKVACGNEHVVAAVSAGETYTGGDLVCYAWGNNNHGQL 220
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT-------DDGY 264
GL S +R P+LIS G ++ ++ACG HT ++T D
Sbjct: 221 GLGDKESRSR--------PVLISAFS-EGSSWE-VYEIACGTWHTAVLTNKKSFDVDLES 270
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ W++G G +G LG G T +P V
Sbjct: 271 RCWTFGLGDNGQLGHGTTATICSPQPV 297
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 21/121 (17%)
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V+V G HT ++ G+V+SWG M LG T EA + + ++ +G P
Sbjct: 5 VVAVAAGEAHTLALTGDGEVYSWGRGMFGRLG-------TGREADEHVPTVVAAGGRPR- 56
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEF 300
P+F V VA GA H++ + D+G LWSWG G LG G+ F P L E F
Sbjct: 57 PRF---VAVASGAYHSLALDDEG-SLWSWGYNIYGQLGYGEENSLF-------PCLVERF 105
Query: 301 K 301
+
Sbjct: 106 Q 106
>gi|212275634|ref|NP_001130888.1| uncharacterized protein LOC100191992 [Zea mays]
gi|194690372|gb|ACF79270.1| unknown [Zea mays]
gi|219884485|gb|ACL52617.1| unknown [Zea mays]
gi|219885259|gb|ACL53004.1| unknown [Zea mays]
gi|219885461|gb|ACL53105.1| unknown [Zea mays]
gi|238010394|gb|ACR36232.1| unknown [Zea mays]
gi|414880676|tpg|DAA57807.1| TPA: putative regulator of chromosome condensation (RCC1) family
protein [Zea mays]
Length = 556
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 249/429 (58%), Positives = 324/429 (75%), Gaps = 13/429 (3%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ SV AGGMMSLAID+ G+LWMWG+CP + G F + SS P PVWDFHGHTVVKV
Sbjct: 132 KLSSVTAGGMMSLAIDSLGSLWMWGSCP--QQTDAGEFCISSSSIPLPVWDFHGHTVVKV 189
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG+EHVVA VSAGETY G DLVCY+WG NN+GQLGLGD+ESR RP +I F++ S W V
Sbjct: 190 ACGNEHVVAAVSAGETYTGGDLVCYAWGNNNHGQLGLGDKESRSRPVLISAFSEGSSWEV 249
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
YE+ CG+ HTA+L ++K D +ES CWTFGLG+ GQLGHGTT + P+ V LP +
Sbjct: 250 YEIACGASHTAVLANKKS-TDQIESRCWTFGLGDKGQLGHGTTATICSPQPVDGLPTGSF 308
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
L+S+DCGLFHT+VVSS G+VW WGME+GLGLCP+AS + + GDA+ PI + +G K
Sbjct: 309 LISLDCGLFHTTVVSSDGEVWCWGMERGLGLCPDASFSGVDEGDALYPIRVQSPETNGFK 368
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQ 302
F PVQ+ACGAAHTVLV DGY++W+WGRGRSGVLG G+T D + P +V+WPPL E F +
Sbjct: 369 FLGPVQIACGAAHTVLVAGDGYRMWAWGRGRSGVLGRGQTADSYIPCVVMWPPLDENFHE 428
Query: 303 DEL--NTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGK 360
D++ +T ++D T E ++KLS+A EE++ L+SKL++MERYA+ILH SIF K
Sbjct: 429 DQMGGSTSRVNDHTST-------ELEQKLSAASEELQFLRSKLTLMERYANILHISIFRK 481
Query: 361 PFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQ 420
P E+ +P SL++ FDI KE+EN+L++AD +L RLE FYR+ML+GVKDKL+KRR++
Sbjct: 482 PL-DERALPRSLQESSVFDIRKEFENILDAADTDELNRLEIFYRSMLSGVKDKLLKRRVR 540
Query: 421 EIVNECLHS 429
E+V +C+ S
Sbjct: 541 EMVQQCIIS 549
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 132/332 (39%), Gaps = 78/332 (23%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPD----------SSTEGGFSLVSSFTPSPVW 52
++ +V AG +LA+ G ++ WG P T ++ +S TP P +
Sbjct: 4 KVVAVAAGEAHTLALTGDGQVYSWGRGPFGRLGNGREDDKLVPTAVAPAVSASGTPRPRF 63
Query: 53 DFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE 112
V VA G+ H +AL G + SWG N GQLG GD+ S L P +E
Sbjct: 64 -------VAVAAGAYHSLALDDEGSLW--------SWGYNLYGQLGYGDQNS-LFPCFVE 107
Query: 113 TFNQ-DSPWAVYE---------------VTCGSFHTALLTHRKRPNDMLESMCWTFG-LG 155
F SP + + VT G + + D L S+ W +G
Sbjct: 108 QFQDLGSPETLNDEDQNTRGRTCLKLSSVTAGGMMSLAI-------DSLGSL-WMWGSCP 159
Query: 156 ENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS--------WGM 207
+ G S+ +P V + + +V V CG H SAG+ ++ WG
Sbjct: 160 QQTDAGEFCISSSSIPLPVWDFHGHT-VVKVACGNEHVVAAVSAGETYTGGDLVCYAWGN 218
Query: 208 EK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG-- 263
LGL S +R P+LIS G ++ ++ACGA+HT ++ +
Sbjct: 219 NNHGQLGLGDKESRSR--------PVLISAFS-EGSSWE-VYEIACGASHTAVLANKKST 268
Query: 264 ----YKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ W++G G G LG G T +P V
Sbjct: 269 DQIESRCWTFGLGDKGQLGHGTTATICSPQPV 300
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V+V G HT ++ G V+SWG G N A++P +S +G P+
Sbjct: 5 VVAVAAGEAHTLALTGDGQVYSWG-RGPFGRLGNGREDDKLVPTAVAPA-VSASGTPRPR 62
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQ 302
F V VA GA H++ + D+G LWSWG G LG G F P E+F Q
Sbjct: 63 F---VAVAAGAYHSLALDDEG-SLWSWGYNLYGQLGYGDQNSLF-------PCFVEQF-Q 110
Query: 303 DELNTGGLDDE 313
D + L+DE
Sbjct: 111 DLGSPETLNDE 121
>gi|242054259|ref|XP_002456275.1| hypothetical protein SORBIDRAFT_03g033330 [Sorghum bicolor]
gi|241928250|gb|EES01395.1| hypothetical protein SORBIDRAFT_03g033330 [Sorghum bicolor]
Length = 560
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 244/433 (56%), Positives = 321/433 (74%), Gaps = 8/433 (1%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ SVKAGGMMS AID+ G LWMWG+CP + G + SS P PVWDFHGHTVVKV
Sbjct: 132 KLSSVKAGGMMSFAIDSLGGLWMWGSCP--QQTDAGELCISSSSIPLPVWDFHGHTVVKV 189
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG+EHVVA VS GETY DLVCY+WG NN+GQLGLGD+ESR RP +I F++ S W V
Sbjct: 190 ACGNEHVVAAVSVGETYTEGDLVCYAWGNNNHGQLGLGDKESRSRPVLISAFSEGSSWEV 249
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
YE+ CG+ HTA+L ++K +D +ES CWTFGLG+ GQLGHGTT + P+ V LP +
Sbjct: 250 YEIACGASHTAVLANKKS-SDQIESRCWTFGLGDKGQLGHGTTATICSPQPVDGLPTGSF 308
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
L+S+DCGLFHT++VSS G+VW WGME+GLGLCP+AS + + GDA+ PI + +G +
Sbjct: 309 LISLDCGLFHTTIVSSDGEVWCWGMERGLGLCPDASFSGVDEGDALYPIRVQSPETNGFR 368
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQ 302
F PVQ++CGAAHTVLV DGY++W+WGRGRSGVLG G+T D + P +V+WPPL E F++
Sbjct: 369 FLGPVQISCGAAHTVLVAGDGYRMWAWGRGRSGVLGRGQTADSYIPCVVMWPPLDENFQE 428
Query: 303 -DELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKP 361
E GG + + + E +KLS+A EE++ L+SKL++MERYA+ILH SIF KP
Sbjct: 429 IHEDQAGGSTSRVNDRT---STELTQKLSAASEELQFLRSKLTLMERYANILHISIFRKP 485
Query: 362 FAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQE 421
E+ +P SL++ FDI KE+EN+L++AD +L RLE FYR+ML+GVKDKL+KRR+QE
Sbjct: 486 L-DERALPRSLQESSVFDIRKEFENILDAADTDELNRLEIFYRSMLSGVKDKLLKRRVQE 544
Query: 422 IVNECLHSSTIGK 434
+V +C+ S + G+
Sbjct: 545 MVQQCIISLSAGR 557
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 125/317 (39%), Gaps = 48/317 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGH---TV 59
++ +V AG +LA+ G ++ WG P T + +P G
Sbjct: 4 KVVAVAAGEAHTLALTGDGQVYSWGRGPFGRLGTGREDDELVPTAVAPAVSAGGTPRPRF 63
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ-DS 118
V VA G+ H +AL G + SWG N GQLG GD+ S L P ++E F S
Sbjct: 64 VAVAAGAYHSLALDDEGSLW--------SWGYNLYGQLGYGDQNS-LFPCLVEQFQDLGS 114
Query: 119 PWAVYEVTCGSF-HTALLTHRKRPNDMLESMC------WTFG-LGENGQLGHGTTQSALV 170
P + + + T L + M+ W +G + G S+ +
Sbjct: 115 PETLNDEDQNTRDQTCLKLSSVKAGGMMSFAIDSLGGLWMWGSCPQQTDAGELCISSSSI 174
Query: 171 PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS--------WGMEK--GLGLCPNASLT 220
P V + + +V V CG H S G+ ++ WG LGL S +
Sbjct: 175 PLPVWDFHGHT-VVKVACGNEHVVAAVSVGETYTEGDLVCYAWGNNNHGQLGLGDKESRS 233
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG------YKLWSWGRGRS 274
R P+LIS G ++ ++ACGA+HT ++ + + W++G G
Sbjct: 234 R--------PVLISAFS-EGSSWE-VYEIACGASHTAVLANKKSSDQIESRCWTFGLGDK 283
Query: 275 GVLGTGKTIDFFAPAIV 291
G LG G T +P V
Sbjct: 284 GQLGHGTTATICSPQPV 300
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 69/142 (48%), Gaps = 25/142 (17%)
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD-----AISPILISGNG 237
+V+V G HT ++ G V+SWG +G P L D A++P + +G
Sbjct: 5 VVAVAAGEAHTLALTGDGQVYSWG--RG----PFGRLGTGREDDELVPTAVAPAVSAGGT 58
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
P P+F V VA GA H++ + D+G LWSWG G LG G F P L
Sbjct: 59 PR-PRF---VAVAAGAYHSLALDDEG-SLWSWGYNLYGQLGYGDQNSLF-------PCLV 106
Query: 298 EEFKQDELNTGGLDDEIK-TKD 318
E+F QD + L+DE + T+D
Sbjct: 107 EQF-QDLGSPETLNDEDQNTRD 127
>gi|219885483|gb|ACL53116.1| unknown [Zea mays]
gi|224034505|gb|ACN36328.1| unknown [Zea mays]
gi|414880673|tpg|DAA57804.1| TPA: putative regulator of chromosome condensation (RCC1) family
protein isoform 1 [Zea mays]
gi|414880674|tpg|DAA57805.1| TPA: putative regulator of chromosome condensation (RCC1) family
protein isoform 2 [Zea mays]
Length = 416
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 244/420 (58%), Positives = 317/420 (75%), Gaps = 13/420 (3%)
Query: 12 MMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVA 71
MMSLAID+ G+LWMWG+CP + G F + SS P PVWDFHGHTVVKVACG+EHVVA
Sbjct: 1 MMSLAIDSLGSLWMWGSCP--QQTDAGEFCISSSSIPLPVWDFHGHTVVKVACGNEHVVA 58
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
VSAGETY G DLVCY+WG NN+GQLGLGD+ESR RP +I F++ S W VYE+ CG+ H
Sbjct: 59 AVSAGETYTGGDLVCYAWGNNNHGQLGLGDKESRSRPVLISAFSEGSSWEVYEIACGASH 118
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF 191
TA+L ++K D +ES CWTFGLG+ GQLGHGTT + P+ V LP +L+S+DCGLF
Sbjct: 119 TAVLANKKS-TDQIESRCWTFGLGDKGQLGHGTTATICSPQPVDGLPTGSFLISLDCGLF 177
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
HT+VVSS G+VW WGME+GLGLCP+AS + + GDA+ PI + +G KF PVQ+AC
Sbjct: 178 HTTVVSSDGEVWCWGMERGLGLCPDASFSGVDEGDALYPIRVQSPETNGFKFLGPVQIAC 237
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDEL--NTGG 309
GAAHTVLV DGY++W+WGRGRSGVLG G+T D + P +V+WPPL E F +D++ +T
Sbjct: 238 GAAHTVLVAGDGYRMWAWGRGRSGVLGRGQTADSYIPCVVMWPPLDENFHEDQMGGSTSR 297
Query: 310 LDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPFAAEQDIP 369
++D T E ++KLS+A EE++ L+SKL++MERYA+ILH SIF KP E+ +P
Sbjct: 298 VNDHTST-------ELEQKLSAASEELQFLRSKLTLMERYANILHISIFRKPL-DERALP 349
Query: 370 ISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECLHS 429
SL++ FDI KE+EN+L++AD +L RLE FYR+ML+GVKDKL+KRR++E+V +C+ S
Sbjct: 350 RSLQESSVFDIRKEFENILDAADTDELNRLEIFYRSMLSGVKDKLLKRRVREMVQQCIIS 409
>gi|297807193|ref|XP_002871480.1| hypothetical protein ARALYDRAFT_487995 [Arabidopsis lyrata subsp.
lyrata]
gi|297317317|gb|EFH47739.1| hypothetical protein ARALYDRAFT_487995 [Arabidopsis lyrata subsp.
lyrata]
Length = 554
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 253/432 (58%), Positives = 305/432 (70%), Gaps = 28/432 (6%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++C+VKAG MMSLAIDN G LWMWGN P DS + S S P P+ DFHG TV+KV
Sbjct: 145 KVCAVKAGSMMSLAIDNVGGLWMWGNVPPQDSEPDPRLSFTSIPIPFPILDFHGRTVLKV 204
Query: 63 ACGSEHVVALVSAGETYKGEDL---VCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
ACG EHVVALV G+ K V YSWG N++GQLG+GDRESR RP+I+ETFNQ+S
Sbjct: 205 ACGDEHVVALVGPGDINKDNSYDVSVLYSWGNNHHGQLGVGDRESRPRPQIVETFNQNSG 264
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
VYE+ CG+ HTALLT++K S+CWTFG GENGQLGH + +S +PE V ELP+
Sbjct: 265 LTVYEIACGAHHTALLTYKKE-TPKGPSICWTFGFGENGQLGHRSNKSLSIPEPVSELPE 323
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ YLVSVDCGLFHTSVVSS G VWSWGME+GLGLCP+ + T EAGD P IS
Sbjct: 324 HAYLVSVDCGLFHTSVVSSEGYVWSWGMERGLGLCPDVNFTEVEAGDDSVPRKISA---- 379
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
G +F+DPVQV+CGAAHTVLV D GYKLWSWGRGR+GVLGTG D + P +V WP
Sbjct: 380 GSRFRDPVQVSCGAAHTVLVADGGYKLWSWGRGRNGVLGTGNVSDCYVPTLVFWP----- 434
Query: 300 FKQDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFG 359
E+K E E D S++ EE+K L+SKL VMERYASILHGSIFG
Sbjct: 435 ------------YELKP---EKEEVPDADKSASTEEIKRLESKLMVMERYASILHGSIFG 479
Query: 360 KPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRI 419
KPF E+DIP SL+ G+FD+ KEW MLESAD+S+L+RL+ FY +M+ VKDK+++RRI
Sbjct: 480 KPFNEEEDIPYSLRVSGYFDMGKEWGEMLESADKSQLMRLQAFYEDMIGRVKDKVLQRRI 539
Query: 420 QEIVNECLHSST 431
QEI+ +CL SS
Sbjct: 540 QEIMRDCLQSSA 551
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 103/285 (36%), Gaps = 62/285 (21%)
Query: 50 PVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK 109
P+ + ++ +A G H +AL G YSWG G+LG G L P
Sbjct: 9 PIPEDLSRKIISLAAGEAHTIALTGDG--------CVYSWGRGMFGRLGTGKESDELVPV 60
Query: 110 IIE----TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
+E + + + G++H+ ++ + W +G GQLG
Sbjct: 61 RVEFEFPNQAEGDRIRIVGIAAGAYHSLAVSD--------DGSVWCWGYNIYGQLGF-DG 111
Query: 166 QSALVPEQVKELPQY-----------------VYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+++L P +K L + + + +V G + + + G +W WG
Sbjct: 112 ENSLAPCLIKNLFEQGASISSLNDSGREARSDLKVCAVKAGSMMSLAIDNVGGLWMWGNV 171
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT-------D 261
P+ L+ PI HG + ++VACG H V + D
Sbjct: 172 PPQDSEPDPRLSFTSI-----PIPFPILDFHG---RTVLKVACGDEHVVALVGPGDINKD 223
Query: 262 DGYK---LWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQD 303
+ Y L+SWG G LG G P IV E F Q+
Sbjct: 224 NSYDVSVLYSWGNNHHGQLGVGDRESRPRPQIV------ETFNQN 262
>gi|7573415|emb|CAB87718.1| putative protein [Arabidopsis thaliana]
Length = 541
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 251/432 (58%), Positives = 306/432 (70%), Gaps = 27/432 (6%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++C+VKAG MMSLAIDN G LWMWGN P DS + S S P P+ DFHG TV+KV
Sbjct: 131 KVCTVKAGSMMSLAIDNVGGLWMWGNVPPQDSEPDPRLSFTSIPIPFPILDFHGRTVLKV 190
Query: 63 ACGSEHVVALVSAGETYKGEDL---VCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
ACG EHVVALV G+ +K V YSWG N++GQLGLGD ESR RP+ +ETFNQ S
Sbjct: 191 ACGDEHVVALVGPGDIHKDNSYDVSVLYSWGNNHHGQLGLGDGESRARPQTVETFNQKSG 250
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
VY++ CG+ HTALLT+RK S+CWTFG GENGQLGH + +S+ +PE V +LP+
Sbjct: 251 LTVYDIACGAHHTALLTYRKE-TPKGPSICWTFGFGENGQLGHRSNKSSSLPEPVSDLPE 309
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ YLVSVDCGLFHTSVVSS G VWSWGME+GLGLCP+ + T EAGD P ISG
Sbjct: 310 HAYLVSVDCGLFHTSVVSSEGYVWSWGMERGLGLCPDVNFTEVEAGDDSVPRKISGGSS- 368
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
+F+DPVQV+CGAAHTVLV D GYKLWSWGRGR+GVLGTG D + P +V WP
Sbjct: 369 --RFRDPVQVSCGAAHTVLVVDGGYKLWSWGRGRNGVLGTGNVSDCYVPTLVFWP----- 421
Query: 300 FKQDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFG 359
+E+K E E D+ S++ EE+K L+SKL VMERYASILHGSIFG
Sbjct: 422 ------------NELKP---EKEEVPDDGKSASTEEIKRLESKLMVMERYASILHGSIFG 466
Query: 360 KPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRI 419
KPF E+DIP SL+ G+FD+ KEW MLESAD+S+L+RL+ FY +M+ VKDK+++RRI
Sbjct: 467 KPFNEEEDIPYSLRVSGYFDMGKEWGEMLESADKSQLMRLQAFYEDMIGRVKDKVLQRRI 526
Query: 420 QEIVNECLHSST 431
QEI+ +CL SS
Sbjct: 527 QEIMKDCLQSSA 538
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 93/236 (39%), Gaps = 36/236 (15%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ-- 116
++ +A G H +AL G YSWG G+LG G L P ++E NQ
Sbjct: 18 IISLAAGEAHTIALTGDG--------CVYSWGRGMFGRLGTGKESDELVPVLVEFPNQAE 69
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESM--CWTFGLGENGQLGHGTTQSALVPEQV 174
+ V G++H+ ++ + D S+ C L E T S+ + +
Sbjct: 70 GDRIRIVGVAAGAYHSLAVSDGQLGFDGENSLAPCLIKNLFER------ETSSSSLNDSG 123
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS 234
+E+ + + +V G + + + G +W WG P+ L+ PI
Sbjct: 124 REVGSDLKVCTVKAGSMMSLAIDNVGGLWMWGNVPPQDSEPDPRLSFTSI-----PIPFP 178
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVT-------DDGYK---LWSWGRGRSGVLGTG 280
HG + ++VACG H V + D+ Y L+SWG G LG G
Sbjct: 179 ILDFHG---RTVLKVACGDEHVVALVGPGDIHKDNSYDVSVLYSWGNNHHGQLGLG 231
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTE 298
+ +A G AHT+ +T DG ++SWGRG G LGTGK D P +V +P E
Sbjct: 19 ISLAAGEAHTIALTGDGC-VYSWGRGMFGRLGTGKESDELVPVLVEFPNQAE 69
>gi|18416604|ref|NP_568250.1| regulator of chromosome condensation repeat-containing protein
[Arabidopsis thaliana]
gi|16604485|gb|AAL24248.1| AT5g11580/F15N18_170 [Arabidopsis thaliana]
gi|18958034|gb|AAL79590.1| AT5g11580/F15N18_170 [Arabidopsis thaliana]
gi|332004314|gb|AED91697.1| regulator of chromosome condensation repeat-containing protein
[Arabidopsis thaliana]
Length = 553
Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust.
Identities = 251/432 (58%), Positives = 306/432 (70%), Gaps = 27/432 (6%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++C+VKAG MMSLAIDN G LWMWGN P DS + S S P P+ DFHG TV+KV
Sbjct: 143 KVCTVKAGSMMSLAIDNVGGLWMWGNVPPQDSEPDPRLSFTSIPIPFPILDFHGRTVLKV 202
Query: 63 ACGSEHVVALVSAGETYKGEDL---VCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
ACG EHVVALV G+ +K V YSWG N++GQLGLGD ESR RP+ +ETFNQ S
Sbjct: 203 ACGDEHVVALVGPGDIHKDNSYDVSVLYSWGNNHHGQLGLGDGESRARPQTVETFNQKSG 262
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
VY++ CG+ HTALLT+RK S+CWTFG GENGQLGH + +S+ +PE V +LP+
Sbjct: 263 LTVYDIACGAHHTALLTYRKE-TPKGPSICWTFGFGENGQLGHRSNKSSSLPEPVSDLPE 321
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ YLVSVDCGLFHTSVVSS G VWSWGME+GLGLCP+ + T EAGD P ISG
Sbjct: 322 HAYLVSVDCGLFHTSVVSSEGYVWSWGMERGLGLCPDVNFTEVEAGDDSVPRKISGGSS- 380
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
+F+DPVQV+CGAAHTVLV D GYKLWSWGRGR+GVLGTG D + P +V WP
Sbjct: 381 --RFRDPVQVSCGAAHTVLVVDGGYKLWSWGRGRNGVLGTGNVSDCYVPTLVFWP----- 433
Query: 300 FKQDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFG 359
+E+K E E D+ S++ EE+K L+SKL VMERYASILHGSIFG
Sbjct: 434 ------------NELKP---EKEEVPDDGKSASTEEIKRLESKLMVMERYASILHGSIFG 478
Query: 360 KPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRI 419
KPF E+DIP SL+ G+FD+ KEW MLESAD+S+L+RL+ FY +M+ VKDK+++RRI
Sbjct: 479 KPFNEEEDIPYSLRVSGYFDMGKEWGEMLESADKSQLMRLQAFYEDMIGRVKDKVLQRRI 538
Query: 420 QEIVNECLHSST 431
QEI+ +CL SS
Sbjct: 539 QEIMKDCLQSSA 550
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 94/250 (37%), Gaps = 52/250 (20%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ-- 116
++ +A G H +AL G YSWG G+LG G L P ++E NQ
Sbjct: 18 IISLAAGEAHTIALTGDG--------CVYSWGRGMFGRLGTGKESDELVPVLVEFPNQAE 69
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG------------- 163
+ V G++H+ ++ + W +G GQLG
Sbjct: 70 GDRIRIVGVAAGAYHSLAVSD--------DGSVWCWGYNIYGQLGFDGENSLAPCLIKNL 121
Query: 164 ---TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
T S+ + + +E+ + + +V G + + + G +W WG P+ L+
Sbjct: 122 FERETSSSSLNDSGREVGSDLKVCTVKAGSMMSLAIDNVGGLWMWGNVPPQDSEPDPRLS 181
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT-------DDGYK---LWSWG 270
PI HG + ++VACG H V + D+ Y L+SWG
Sbjct: 182 FTSI-----PIPFPILDFHG---RTVLKVACGDEHVVALVGPGDIHKDNSYDVSVLYSWG 233
Query: 271 RGRSGVLGTG 280
G LG G
Sbjct: 234 NNHHGQLGLG 243
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTE 298
+ +A G AHT+ +T DG ++SWGRG G LGTGK D P +V +P E
Sbjct: 19 ISLAAGEAHTIALTGDGC-VYSWGRGMFGRLGTGKESDELVPVLVEFPNQAE 69
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
++D + + G HT LT + +++G G G+LG G LVP
Sbjct: 10 ISEDLSRKIISLAAGEAHTIALTG--------DGCVYSWGRGMFGRLGTGKESDELVPVL 61
Query: 174 VKELPQY-----VYLVSVDCGLFHTSVVSSAGDVWSWG 206
V E P + +V V G +H+ VS G VW WG
Sbjct: 62 V-EFPNQAEGDRIRIVGVAAGAYHSLAVSDDGSVWCWG 98
>gi|21554872|gb|AAM63715.1| unknown [Arabidopsis thaliana]
Length = 553
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 250/432 (57%), Positives = 305/432 (70%), Gaps = 27/432 (6%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ +VKAG MMSLAIDN G LWMWGN P DS + S S P P+ DFHG TV+KV
Sbjct: 143 KVGTVKAGSMMSLAIDNVGGLWMWGNVPPQDSEPDPRLSFTSIPIPFPILDFHGRTVLKV 202
Query: 63 ACGSEHVVALVSAGETYKGEDL---VCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
ACG EHVVALV G+ +K V YSWG N++GQLGLGD ESR RP+I+ETFNQ+S
Sbjct: 203 ACGDEHVVALVGPGDIHKDNSYDVSVLYSWGNNHHGQLGLGDSESRARPQIVETFNQNSG 262
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ VY + CG+ HTALLT+RK S+CWTFG GENGQLGH + +S+ +PE V +LP+
Sbjct: 263 FTVYNIACGAHHTALLTYRKE-TPKGPSICWTFGFGENGQLGHRSNKSSSLPEPVSDLPE 321
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ YLVSVDCGLFHTSVVSS G VWSWGME+GLGLCP+ + T EAGD P ISG
Sbjct: 322 HAYLVSVDCGLFHTSVVSSEGYVWSWGMERGLGLCPDVNFTEVEAGDDSVPRKISGGSS- 380
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
+F+DPVQV+CGAAHTVLV D GYKLWSWGRGR+ VLGTG D P +V WP
Sbjct: 381 --RFRDPVQVSCGAAHTVLVADGGYKLWSWGRGRNRVLGTGXVSDXXVPTLVFWP----- 433
Query: 300 FKQDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFG 359
+E+K E E D+ S++ EE+K L+SKL VMERYASILHGSIFG
Sbjct: 434 ------------NELKP---EKEEVPDDGKSASTEEIKRLESKLMVMERYASILHGSIFG 478
Query: 360 KPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRI 419
KPF E+DIP SL+ G+FD+ KEW MLESAD+S+L+RL+ FY +M+ VKDK+++RRI
Sbjct: 479 KPFNEEEDIPYSLRVSGYFDMGKEWGEMLESADKSQLMRLQAFYEDMIGRVKDKVLQRRI 538
Query: 420 QEIVNECLHSST 431
QEI+ +CL SS
Sbjct: 539 QEIMKDCLQSSA 550
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 105/283 (37%), Gaps = 60/283 (21%)
Query: 50 PVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK 109
P+ + ++ +A G H +AL G YSWG G+LG G L P
Sbjct: 9 PISEDLSRKIISLAAGEAHTIALTGDG--------CVYSWGRGMFGRLGTGKESDELVPV 60
Query: 110 IIETFNQ--DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
+E NQ + V G++H+ ++ + W +G GQLG ++
Sbjct: 61 RVEFPNQAEGERIRIIGVAAGAYHSLAVSD--------DGSVWCWGYNIYGQLGF-DGEN 111
Query: 168 ALVPEQVKELPQY-----------------VYLVSVDCGLFHTSVVSSAGDVWSWGMEKG 210
+L P VK L + + + +V G + + + G +W WG
Sbjct: 112 SLAPCLVKNLFEQEASSSSLNDSGREARSDLKVGTVKAGSMMSLAIDNVGGLWMWGNVPP 171
Query: 211 LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT-------DDG 263
P+ L+ PI HG + ++VACG H V + D+
Sbjct: 172 QDSEPDPRLSFTSI-----PIPFPILDFHG---RTVLKVACGDEHVVALVGPGDIHKDNS 223
Query: 264 YK---LWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQD 303
Y L+SWG G LG G + P IV E F Q+
Sbjct: 224 YDVSVLYSWGNNHHGQLGLGDSESRARPQIV------ETFNQN 260
>gi|357436203|ref|XP_003588377.1| Regulator of chromosome condensation family protein [Medicago
truncatula]
gi|355477425|gb|AES58628.1| Regulator of chromosome condensation family protein [Medicago
truncatula]
Length = 433
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/320 (63%), Positives = 249/320 (77%), Gaps = 21/320 (6%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I S+KAGGMMSL+IDN GALWMWGNCP S EG FS+VS+FTP+PVWDFHGHTVVKV
Sbjct: 131 KIISIKAGGMMSLSIDNLGALWMWGNCP--HQSKEGIFSIVSNFTPTPVWDFHGHTVVKV 188
Query: 63 ACGSEHVVALVSAGETYKGE--DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
ACG+EH++ALVS GE+Y GE DL+CYSWG NN+GQLGLGD E R P++++TF+QDS W
Sbjct: 189 ACGNEHIIALVSVGESYNGENDDLICYSWGNNNHGQLGLGDTEDRPNPEMVKTFDQDSHW 248
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
++YE+ CG+FHTA +CWTFGLGENGQLGHGTTQS +PE V+ELPQ+
Sbjct: 249 SIYEIACGAFHTAF-------------VCWTFGLGENGQLGHGTTQSTSIPELVQELPQF 295
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
V LVSVDCGLFHT VVSS GDVWSWGMEKGLGL P+A + + DA+SP+++S P+
Sbjct: 296 VNLVSVDCGLFHTCVVSSDGDVWSWGMEKGLGLYPDARVVGEYSSDALSPLVVS--NPYE 353
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE- 299
KF +PVQVACGAAHT++V +GYK+WS GRGRSGVLG G +D + P +VLWPPL E+
Sbjct: 354 AKFLEPVQVACGAAHTIIVAQEGYKVWSLGRGRSGVLGNGNVVDCYIPTLVLWPPLVEDF 413
Query: 300 -FKQDELNTGGLDDEIKTKD 318
FKQ+E ++ D+ K +D
Sbjct: 414 HFKQEEPSSFRELDKGKEED 433
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 106/270 (39%), Gaps = 63/270 (23%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V VA G H + L G Y SWG G+LGLG + +L P ++ +Q+S
Sbjct: 14 VTAVAAGEAHTLLLAGDGRVY--------SWGRGTLGRLGLGSEQDQLFPAQVKFGSQES 65
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG----------HGTTQSA 168
+ + G++H+ L D CW + L + H S
Sbjct: 66 I-RIVGIAAGAYHSLALA------DDGSVWCWGYNLYGYYSVVPCLLNKFLELHPPDSST 118
Query: 169 LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
L+ E+V+ Q + ++S+ G + + + G +W WG CP +++ + I
Sbjct: 119 LLLEEVEGKAQ-LKIISIKAGGMMSLSIDNLGALWMWGN------CP------HQSKEGI 165
Query: 229 SPILISGNGP------HGPKFQDPVQVACGAAHTVLVT---------DDGYKLWSWGRGR 273
I +S P HG V+VACG H + + +D +SWG
Sbjct: 166 FSI-VSNFTPTPVWDFHG---HTVVKVACGNEHIIALVSVGESYNGENDDLICYSWGNNN 221
Query: 274 SGVLGTGKTIDFFAPAIVLWPPLTEEFKQD 303
G LG G T D P +V + F QD
Sbjct: 222 HGQLGLGDTEDRPNPEMV------KTFDQD 245
>gi|217074694|gb|ACJ85707.1| unknown [Medicago truncatula]
gi|388497904|gb|AFK37018.1| unknown [Medicago truncatula]
Length = 389
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 166/233 (71%), Positives = 200/233 (85%), Gaps = 3/233 (1%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++C+VKAGGMMSLAIDN G LWMWGN +P S E G SLVSSFTP+PVWDFHG TVVKV
Sbjct: 147 EMCTVKAGGMMSLAIDNRGTLWMWGN--IPQESKESGISLVSSFTPTPVWDFHGRTVVKV 204
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG+EHVVALV+A ++++ EDL+CYSWG N++GQLGLGDR+SRL P++++ +++SPW +
Sbjct: 205 ACGNEHVVALVNAIDSHEDEDLLCYSWGYNSHGQLGLGDRQSRLHPEVVKILDEESPWTI 264
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
YEV CG+FHTALL H+K+P+ LESMCWTFGLGENGQLGHGTTQS L P VKELPQ ++
Sbjct: 265 YEVACGAFHTALLAHKKKPDATLESMCWTFGLGENGQLGHGTTQSTLFPTPVKELPQSIH 324
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTR-NEAGDAISPILIS 234
L+SVDCGLFHTSVVSS GDVWSWGMEKGLGLCP+A+ N GDA+SP+LIS
Sbjct: 325 LISVDCGLFHTSVVSSTGDVWSWGMEKGLGLCPDANRAETNSGGDALSPLLIS 377
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 118/297 (39%), Gaps = 51/297 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN--------CPLPDSSTEGGFSLVSSF-------- 46
+I + AG +LA+ G++W WG C DS L+S F
Sbjct: 74 KIVGIAAGSYHTLALAEDGSVWCWGYNIYGQLGLCEEEDSHGSLVPCLLSRFLELQPHNS 133
Query: 47 --TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES 104
PS D + V G +A+ + G + W G + +ES
Sbjct: 134 STDPSEAEDKASLEMCTVKAGGMMSLAIDNRG--------TLWMW-----GNIPQESKES 180
Query: 105 RLRPKIIETFNQDSPW-----AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQ 159
+ ++ +F W V +V CG+ H L + ++ + +C+++G +GQ
Sbjct: 181 GI--SLVSSFTPTPVWDFHGRTVVKVACGNEHVVALVNAIDSHEDEDLLCYSWGYNSHGQ 238
Query: 160 LGHGTTQSALVPEQVK----ELPQYVYLVSVDCGLFHTSVVSSAG--DVWSWGMEKGLGL 213
LG G QS L PE VK E P +Y V+ CG FHT++++ D M GL
Sbjct: 239 LGLGDRQSRLHPEVVKILDEESPWTIYEVA--CGAFHTALLAHKKKPDATLESMCWTFGL 296
Query: 214 CPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG 270
N L + P + P+ + V CG HT +V+ G +WSWG
Sbjct: 297 GENGQLGHGTTQSTLFPTPVK----ELPQSIHLISVDCGLFHTSVVSSTG-DVWSWG 348
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 104/281 (37%), Gaps = 72/281 (25%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+P D H +V VA G H + L ED Y WG G+LG G ++ L
Sbjct: 8 PNP--DNPSHKIVDVAAGESHTLLLT--------EDGSVYCWGRGMFGRLGNGSQKDELF 57
Query: 108 PKIIETFN----QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-- 161
PK + N QDS + + GS+HT L + W +G GQLG
Sbjct: 58 PKKLNFGNPNGTQDSV-KIVGIAAGSYHTLALAE--------DGSVWCWGYNIYGQLGLC 108
Query: 162 -----HGTTQSALVPEQVKELPQ-------------YVYLVSVDCGLFHTSVVSSAGDVW 203
HG+ L+ ++ P + + +V G + + + G +W
Sbjct: 109 EEEDSHGSLVPCLLSRFLELQPHNSSTDPSEAEDKASLEMCTVKAGGMMSLAIDNRGTLW 168
Query: 204 SWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP------HGPKFQDPVQVACGAAHTV 257
WG N E+G + L+S P HG + V+VACG H V
Sbjct: 169 MWG---------NIPQESKESGIS----LVSSFTPTPVWDFHG---RTVVKVACGNEHVV 212
Query: 258 LVT-------DDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ D+ +SWG G LG G P +V
Sbjct: 213 ALVNAIDSHEDEDLLCYSWGYNSHGQLGLGDRQSRLHPEVV 253
>gi|168025763|ref|XP_001765403.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683456|gb|EDQ69866.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 550
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 156/379 (41%), Positives = 211/379 (55%), Gaps = 45/379 (11%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLP----DSSTEGGFSLVSSFTPSPVWDFHG 56
+S I V AGGMMS AID GALW+WG P P DS FS+ + P V G
Sbjct: 139 LSLIVLVAAGGMMSSAIDVDGALWLWGAVPNPSEFADSHCRNSFSITNIEKPERVRGLLG 198
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
V +VACG+EH++A+V E D CY+WG N GQLGLGD R P++++
Sbjct: 199 LRVYRVACGNEHIIAVV---EGRDNVDPDCYAWGNNQFGQLGLGDFRDRSYPQVVKALAA 255
Query: 117 DSPWAVYEVTCGSFHTALLTHRK-RPNDMLE----------SMCWTFGLGENGQLGHGTT 165
+ ++ CG+FHTA+L + +P D+L+ S+CWTFG GENGQLG GT
Sbjct: 256 SVVGPILDLACGAFHTAILAGKDDQPTDLLQEPNSPTRRRISVCWTFGQGENGQLGQGTK 315
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
+S +P V+ LP L +V CGLFHT+VV+ GDVW WGME GLGLCPN + +G
Sbjct: 316 ESQALPAPVEGLPNE-RLTTVACGLFHTAVVTETGDVWVWGMEGGLGLCPNIGPPGSRSG 374
Query: 226 DAISPILISG--NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
DA+ P+ + G +G P + CGAAHTV +++ G +W+WGRG++GVLG G T
Sbjct: 375 DAVFPVRVFGESSGTCNP-VSGSKGITCGAAHTVTLSNGGKDIWAWGRGQNGVLGVGHTS 433
Query: 284 DFFAPAIVLWPP--LTEEFKQDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQS 341
D + P VLWPP L F+Q N ++S E +K LQ
Sbjct: 434 DCWFPCPVLWPPVSLAPWFEQSVEN---------------------PVASEEETLKTLQK 472
Query: 342 KLSVMERYASILHGSIFGK 360
+L + RYA LH +++G+
Sbjct: 473 ELVEVRRYAESLHAAVYGE 491
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 122/306 (39%), Gaps = 59/306 (19%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG--NCPLPDSSTEGGF---SLVSSFTPSPVWDFH 55
+ ++ V AG +L + G++W WG C S + SL +++T S V
Sbjct: 73 VKKVTQVAAGAYHNLVLTADGSMWSWGYNACIQLTQSLDTSLSACSLTNTWTVSLVAKRP 132
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGE---DLVCYSWGANNNGQLGLGDRESRLRPKIIE 112
+ ++++ ++ LV+AG D + WGA N D R I
Sbjct: 133 HRSPLRLS-----LIVLVAAGGMMSSAIDVDGALWLWGAVPNPS-EFADSHCRNSFSIT- 185
Query: 113 TFNQDSP--------WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
N + P VY V CG+ H + + D ++ C+ +G + GQLG G
Sbjct: 186 --NIEKPERVRGLLGLRVYRVACGNEHIIAVVEGR---DNVDPDCYAWGNNQFGQLGLGD 240
Query: 165 TQSALVPEQVKELPQYVY--LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
+ P+ VK L V ++ + CG FHT++++ D L PN+ R
Sbjct: 241 FRDRSYPQVVKALAASVVGPILDLACGAFHTAILAGKDD-----QPTDLLQEPNSPTRRR 295
Query: 223 EAGDAISPILISGNGPHGPKFQD---------PVQ---------VACGAAHTVLVTDDGY 264
IS G G +G Q PV+ VACG HT +VT+ G
Sbjct: 296 -----ISVCWTFGQGENGQLGQGTKESQALPAPVEGLPNERLTTVACGLFHTAVVTETG- 349
Query: 265 KLWSWG 270
+W WG
Sbjct: 350 DVWVWG 355
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 102/264 (38%), Gaps = 56/264 (21%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET---F 114
TVV+V G H +AL + G Y SWG G+L +G + L P I
Sbjct: 13 TVVQVVAGESHTLALTAVGSVY--------SWGRGLFGKLRVGASQDELIPTYISIGHLR 64
Query: 115 NQDSPWAVY----EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS--- 167
++D V +V G++H +LT + W++G QL S
Sbjct: 65 DKDKEEGVVKKVTQVAAGAYHNLVLT--------ADGSMWSWGYNACIQLTQSLDTSLSA 116
Query: 168 ---------ALVPEQVKELPQYVYL-VSVDCGLFHTSVVSSAGDVWSWGM-----EKGLG 212
+LV ++ P + L V V G +S + G +W WG E
Sbjct: 117 CSLTNTWTVSLVAKRPHRSPLRLSLIVLVAAGGMMSSAIDVDGALWLWGAVPNPSEFADS 176
Query: 213 LCPNA-SLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL----W 267
C N+ S+T E + + +L G + +VACG H + V + + +
Sbjct: 177 HCRNSFSITNIEKPERVRGLL-------GLRV---YRVACGNEHIIAVVEGRDNVDPDCY 226
Query: 268 SWGRGRSGVLGTGKTIDFFAPAIV 291
+WG + G LG G D P +V
Sbjct: 227 AWGNNQFGQLGLGDFRDRSYPQVV 250
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 21/167 (12%)
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV- 174
+DS V +V G HT LT +++G G G+L G +Q L+P +
Sbjct: 8 EDSRITVVQVVAGESHTLALT--------AVGSVYSWGRGLFGKLRVGASQDELIPTYIS 59
Query: 175 --------KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCP--NASLTRNEA 224
KE + V G +H V+++ G +WSWG + L + SL+
Sbjct: 60 IGHLRDKDKEEGVVKKVTQVAAGAYHNLVLTADGSMWSWGYNACIQLTQSLDTSLSACSL 119
Query: 225 GDAISPILISGNGPHGP-KFQDPVQVACGAAHTVLVTDDGYKLWSWG 270
+ + L++ P + V VA G + + DG LW WG
Sbjct: 120 TNTWTVSLVAKRPHRSPLRLSLIVLVAAGGMMSSAIDVDG-ALWLWG 165
>gi|168035821|ref|XP_001770407.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678284|gb|EDQ64744.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 588
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 152/370 (41%), Positives = 207/370 (55%), Gaps = 40/370 (10%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDS------STEGGFSLVSSFTPSPVWDF 54
+ QI +V+AGGM+S AID GALW+WG P P S G FS++ P V
Sbjct: 142 LVQIIAVEAGGMISCAIDLDGALWLWGAVPNPSDCSGSRSSGNGSFSVIRVERPEKVRGL 201
Query: 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
G V +VA G+EH+VALV E DL CY+WG N GQLGLGD R P++++
Sbjct: 202 LGLRVYRVAVGNEHIVALV---EGRDDSDLDCYAWGNNQFGQLGLGDFRDREYPQVVKAL 258
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
+ ++ ++ CG+FHTA+L + S+CWTFG GE+GQLG GT+ + P V
Sbjct: 259 SASVIGSIVDLACGAFHTAILASFCLEGRL--SVCWTFGQGESGQLGQGTSSNQYFPAPV 316
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS 234
+ LP L +V CGLFHTSVV+ DVW WGME GLGLCP + GDA SP+ +
Sbjct: 317 EGLPNE-RLRTVACGLFHTSVVTETDDVWVWGMEGGLGLCPGIGPPGTKTGDAFSPVRVF 375
Query: 235 GNGPHGPKFQDPVQ----VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
G+ PV + CGAAHTV +++ G +W+WGRG+SGVLG+G T D + P
Sbjct: 376 GDSSASCH---PVMGSKGITCGAAHTVTISNGGRDIWAWGRGQSGVLGSGHTSDSWFPCP 432
Query: 291 VLWPPLTEEFKQDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYA 350
V+WPP TGG E S+ ++E+K +Q +L+ + RYA
Sbjct: 433 VIWPPAASA------KTGGQPSEN---------------SAVLDEIKSIQKELAEVRRYA 471
Query: 351 SILHGSIFGK 360
LH +I+G+
Sbjct: 472 ESLHAAIYGE 481
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 99/270 (36%), Gaps = 61/270 (22%)
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+TVV+VA G H +AL + G Y +WG N G+ G+G + P +
Sbjct: 12 NTVVQVAAGEVHTLALTAVGGVY--------TWGRNLFGRSGIGGVQDGFVPTYVSVGTN 63
Query: 117 ------DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALV 170
+ P V +V G+ H LT + + W++G QL S+ +
Sbjct: 64 LDDGDVNRPPKVVQVAAGANHNLALT--------ADGVVWSWGYNACIQLKILHYASSFL 115
Query: 171 PEQVKEL-----------------PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGL 213
+ EL + V +++V+ G + + G +W WG
Sbjct: 116 LLFIHELRIMDGQLGREKDASHPSSKLVQIIAVEAGGMISCAIDLDGALWLWGAVPNPSD 175
Query: 214 C--------PNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT----D 261
C + S+ R E + + +L G + +VA G H V + D
Sbjct: 176 CSGSRSSGNGSFSVIRVERPEKVRGLL-------GLRV---YRVAVGNEHIVALVEGRDD 225
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WG + G LG G D P +V
Sbjct: 226 SDLDCYAWGNNQFGQLGLGDFRDREYPQVV 255
>gi|168028029|ref|XP_001766531.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682176|gb|EDQ68596.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 546
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 141/371 (38%), Positives = 201/371 (54%), Gaps = 39/371 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTE----------GGFSLVSSFTPSPVW 52
++ V+AGGMMS A+D+ G LW+WG P P + F L + P V
Sbjct: 147 KVMVVEAGGMMSSAVDDEGGLWLWGAVPEPSAGVRITDSDQYYKSESFELANINQPERVL 206
Query: 53 DFHGHTVVKVACGSEHVVALVSAGETYKGED-LVCYSWGANNNGQLGLGDRESRLRPKII 111
G V +VACG+EH++ LV G D + CYSWG+N GQLGL D E+R P +
Sbjct: 207 ALRGLKVRRVACGNEHILVLV------DGPDGIACYSWGSNAYGQLGLSDFEARDVPTQV 260
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLTHRKR--PNDMLESMCWTFGLGENGQLGHGTTQSAL 169
+ + +CG+FH+A+ + R D+ S CWTFG ENGQLG GT +++
Sbjct: 261 TALAAHQVGVIVDFSCGAFHSAIASKRDGLGDGDVRLSTCWTFGQNENGQLGIGTCENSH 320
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
P V LP + + +V CGLFHT+VV+ +GDVW WGME GLG CP +++GDA++
Sbjct: 321 TPVAVDALPTHERIQTVVCGLFHTAVVTDSGDVWVWGMEGGLGQCPGIGPPGSKSGDALT 380
Query: 230 PILISG-NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
P+ + G + + +ACGAAHTV V++ G LW+WGRG++GVLG G D + P
Sbjct: 381 PVRVFGESSAKCNRITGSKGIACGAAHTVTVSNGGRDLWAWGRGKNGVLGLGHHSDSWFP 440
Query: 289 AIVLWPPLTEEFKQDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMER 348
+ VLWPP E + + + GG L S E++ L+++L R
Sbjct: 441 SPVLWPPGCESSRDSDADVGGT-----------------PLQS--EDVSSLKAELIECRR 481
Query: 349 YASILHGSIFG 359
Y LH +I+G
Sbjct: 482 YTESLHAAIYG 492
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 242 KFQDP-----VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPL 296
++DP VQV G AHT+ +T G +++WGRG+ G +G G D P ++ + +
Sbjct: 8 NYEDPDASTVVQVVVGEAHTLALTASG-SVYTWGRGQFGRMGMGVFQDELVPTLIEFEAM 66
Query: 297 TEEFK 301
E +
Sbjct: 67 AMEHE 71
>gi|168024675|ref|XP_001764861.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683897|gb|EDQ70303.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 456
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 135/304 (44%), Positives = 183/304 (60%), Gaps = 23/304 (7%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCP-------LPDSSTEGGFSLVSSFTPSPVWDFH 55
QI V+AGGMMS AID G LW+WG P +P+S T F + + P V
Sbjct: 165 QIVQVEAGGMMSSAIDQDGGLWVWGAVPQPAVLDRVPESDT---FEMSNINQPERVLALR 221
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
GH+V ++ACGS+H++AL+ ++ G D CY+WG N GQLGLGD E R+ P I +
Sbjct: 222 GHSVRRIACGSDHILALI---DSRNGVD--CYAWGGNAFGQLGLGDFEPRVIPTKIMSLL 276
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V ++ CG +H+A++T + L S CWTFG ENGQLG G+ ++ P +V+
Sbjct: 277 AQQVGVVVDLACGYYHSAIVTSGAAGDGRL-STCWTFGQNENGQLGVGSCTNSHTPVEVE 335
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
LP + +V CGLFHT+VV +GDVW WGME GLG CP +++GDA+SP+ + G
Sbjct: 336 ALPTRERIQTVVCGLFHTAVVMESGDVWVWGMEGGLGQCPGIGPPGSKSGDALSPVRVFG 395
Query: 236 NGPHGPKFQDPVQ----VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
DPV +ACGAAHTV V++ G LW+WGRG++GVLG G D + P+ V
Sbjct: 396 ---ESSATCDPVTGSKGIACGAAHTVTVSNGGKDLWTWGRGKNGVLGLGHNSDSWFPSPV 452
Query: 292 LWPP 295
LWPP
Sbjct: 453 LWPP 456
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 102/285 (35%), Gaps = 73/285 (25%)
Query: 53 DFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE 112
D T V+VA G H +AL + G Y +WG G++G+G + L P ++E
Sbjct: 11 DSGASTAVQVAAGEAHSLALAANGSVY--------TWGRGQFGRMGMGVFQDELEPTLVE 62
Query: 113 ----TFNQDSPWA-----------VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGE- 156
+D P A V ++ G++H+ L + W++G
Sbjct: 63 IGMIVDEEDIPLARDDRDSAERTRVTQIAAGAYHSLALAG--------DGTVWSWGFNAL 114
Query: 157 -------NGQLGHGTTQSALVPEQVKELPQY------------------VYLVSVDCGLF 191
+GQLG S P L V +V V+ G
Sbjct: 115 LLLNGNMDGQLGRQRAASYPAPVIFPRLSSSSSDENRENAASWNQVVDNVQIVQVEAGGM 174
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH---GPKFQDPVQ 248
+S + G +W WG + A L R D I N P + +
Sbjct: 175 MSSAIDQDGGLWVWG-----AVPQPAVLDRVPESDTFEMSNI--NQPERVLALRGHSVRR 227
Query: 249 VACGAAHTVLVTD--DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ACG+ H + + D +G ++WG G LG G F P ++
Sbjct: 228 IACGSDHILALIDSRNGVDCYAWGGNAFGQLGLGD----FEPRVI 268
>gi|168006664|ref|XP_001756029.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692959|gb|EDQ79314.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 427
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 132/293 (45%), Positives = 167/293 (56%), Gaps = 14/293 (4%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDS----STEGGFSLVSSFTPSPVWDFHGHTVVKV 62
V+A GMMS AID G LW+WG P P + S F L + P V GH V +V
Sbjct: 144 VEANGMMSSAIDQEGGLWLWGAVPHPAAPDKKSESNSFELANINYPERVSALMGHCVRRV 203
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGSEH++ALV+ G D CYSWG N GQLGLGD E R P I+ +
Sbjct: 204 ACGSEHILALVAG---CNGVD--CYSWGGNAYGQLGLGDFEPRDIPTKIKMQQVG---VI 255
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG +H+A+ +D S CWTFG ENGQLG GT ++ P V LP
Sbjct: 256 VDFACGYYHSAI-RESGGVSDGGFSTCWTFGQNENGQLGIGTCTNSNSPVTVGALPTRER 314
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+ +V CGLFHT+VV +GDVW WGME GLG CP +++GDA+SP+ + G
Sbjct: 315 IQTVVCGLFHTAVVMESGDVWVWGMEGGLGQCPGIGPPGSKSGDALSPVRVFGESSAKCN 374
Query: 243 -FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
F +ACGAAHT+ V+D G LW+WGRG++GVLG G D + P+ VLWP
Sbjct: 375 LFSGSKGIACGAAHTLTVSDGGKDLWAWGRGKNGVLGLGHHSDSWFPSPVLWP 427
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELN 306
VQVA G AHT+ +T G +++WGRG+ G +G G D P +V EE
Sbjct: 2 VQVAAGEAHTLALTASG-SVYTWGRGQFGRMGMGVFQDELEPTLVEIGATVEE------- 53
Query: 307 TGGLDDEIKTKDLEGAEERDE 327
D+ + T+D + ER
Sbjct: 54 ----DNGLPTRDDRDSAERSR 70
>gi|302799595|ref|XP_002981556.1| hypothetical protein SELMODRAFT_179009 [Selaginella moellendorffii]
gi|300150722|gb|EFJ17371.1| hypothetical protein SELMODRAFT_179009 [Selaginella moellendorffii]
Length = 430
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 125/287 (43%), Gaps = 67/287 (23%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
F P P+ G + ++ACG H +A+ + GE Y SWG N NGQLGLGD +
Sbjct: 99 FVPHPIKALQGLEIRQIACGDSHCLAVTADGEVY--------SWGRNQNGQLGLGDTDDS 150
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHR-----------------KRPNDML--- 145
L P + F S V + G+ HTA +T R + ML
Sbjct: 151 LVPHKLLAFEGVS---VKMLAAGAEHTAAVTDSGKLYGWGWGRYGNLGLGDRGDRMLPAE 207
Query: 146 ------ESMC------------------WTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
E MC +T+G + GQLGHG L+P QV L ++
Sbjct: 208 VPAVGDEKMCMVACGWRHTIAVSQSGKLYTYGWSKYGQLGHGDYADHLLPHQVAALAEF- 266
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V G HT ++ AG ++ WG K + + D SP LIS G H
Sbjct: 267 NITQVSGGWRHTVALTEAGKLYGWGWNK------FGQVGSGDVDDHTSPQLISIPGQH-- 318
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
Q VQV+CG HTV VTD ++SWGRG SG LG G +D AP
Sbjct: 319 --QRVVQVSCGWRHTVAVTDKN-NVYSWGRGTSGQLGHGDAVDRSAP 362
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 117/244 (47%), Gaps = 39/244 (15%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+ V+ G+ H VAL+S +VC S+G +GQLG GD E RL P+II N
Sbjct: 7 VLLVSAGASHTVALLSG-------QVVC-SFGRGEDGQLGHGDAEDRLLPRIIGALNDCE 58
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ V CG+ HT + + +++G G+ G+LGHG + VP +K L
Sbjct: 59 ---ISLVACGADHTTAYSATRL-------TIYSWGWGDFGRLGHGNSSDLFVPHPIKAL- 107
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + + CG H V++ G+V+SWG + N L + D++ P
Sbjct: 108 QGLEIRQIACGDSHCLAVTADGEVYSWGRNQ------NGQLGLGDTDDSLV--------P 153
Query: 239 HGPKFQDPVQV---ACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
H + V V A GA HT VTD G KL+ WG GR G LG G D PA V P
Sbjct: 154 HKLLAFEGVSVKMLAAGAEHTAAVTDSG-KLYGWGWGRYGNLGLGDRGDRMLPAEV--PA 210
Query: 296 LTEE 299
+ +E
Sbjct: 211 VGDE 214
>gi|302760205|ref|XP_002963525.1| hypothetical protein SELMODRAFT_438355 [Selaginella moellendorffii]
gi|300168793|gb|EFJ35396.1| hypothetical protein SELMODRAFT_438355 [Selaginella moellendorffii]
Length = 430
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 125/287 (43%), Gaps = 67/287 (23%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
F P P+ G + ++ACG H +A+ + GE Y SWG N NGQLGLGD +
Sbjct: 99 FVPHPIKALQGLEIRQIACGDSHCLAVTADGEVY--------SWGRNQNGQLGLGDTDDS 150
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHR-----------------KRPNDML--- 145
L P + F S V + G+ HTA +T R + ML
Sbjct: 151 LVPHKLLAFEGVS---VKMLAAGAEHTAAVTDGGKLYGWGWGRYGNLGLGDRGDRMLPAE 207
Query: 146 ------ESMC------------------WTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
E MC +T+G + GQLGHG L+P QV L ++
Sbjct: 208 VPAVGDEKMCMVACGWRHTIAVSQSGKLYTYGWSKYGQLGHGDYADHLLPHQVAALAEF- 266
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V G HT ++ AG ++ WG K + + D SP LIS G H
Sbjct: 267 NITQVSGGWRHTVALTEAGKLYGWGWNK------FGQVGSGDVDDHTSPQLISIPGQH-- 318
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
Q VQV+CG HTV VTD ++SWGRG SG LG G +D AP
Sbjct: 319 --QRVVQVSCGWRHTVAVTDKN-NVYSWGRGTSGQLGHGDAVDRSAP 362
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 117/242 (48%), Gaps = 35/242 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+ V+ G+ H VAL+S +VC S+G +GQLG GD E R P+II N
Sbjct: 7 VLLVSAGASHTVALLSG-------QVVC-SFGRGEDGQLGHGDAEDRHLPRIIGALNDCE 58
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ V CG+ HT + + +++G G+ G+LGHG + VP +K L
Sbjct: 59 ---ISLVACGADHTTAYSATRL-------TIYSWGWGDFGRLGHGNSSDLFVPHPIKAL- 107
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP-ILISGNG 237
Q + + + CG H V++ G+V+SWG + N L + D++ P L++ G
Sbjct: 108 QGLEIRQIACGDSHCLAVTADGEVYSWGRNQ------NGQLGLGDTDDSLVPHKLLAFEG 161
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
+A GA HT VTD G KL+ WG GR G LG G D PA V P +
Sbjct: 162 V------SVKMLAAGAEHTAAVTDGG-KLYGWGWGRYGNLGLGDRGDRMLPAEV--PAVG 212
Query: 298 EE 299
+E
Sbjct: 213 DE 214
>gi|301094633|ref|XP_002896421.1| regulator of chromosome condensation (RCC1)-like protein
[Phytophthora infestans T30-4]
gi|262109510|gb|EEY67562.1| regulator of chromosome condensation (RCC1)-like protein
[Phytophthora infestans T30-4]
Length = 1289
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 139/311 (44%), Gaps = 61/311 (19%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---------------CPLPDSSTEGGFSLVSSFTP 48
I V GG L + + G ++ +G+ LPD+ + S S P
Sbjct: 479 IVQVACGGEHLLYLTSTGDVYSYGDNEDKKVAAVTVATHTSTLPDNESTRVVSTSSFLAP 538
Query: 49 SPVWDF------HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
V + H T+ VACG++H +A+ AGE Y+WG+ +G+LG GD
Sbjct: 539 HLVEELALEKALHRTTIAMVACGAQHSLAITDAGE--------LYTWGSGEDGRLGHGDM 590
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
R P+ + + ++S V +CG HTA+LT + +TFG G NG+LG
Sbjct: 591 RDRAVPRKVMSLLRES---VVSASCGGAHTAVLTAK--------GSVFTFGRGRNGRLGL 639
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G + P + PQ + V CG T+ + G V++WG + G G C + R
Sbjct: 640 GDNKWRDTPHPIVGFPQGTSISLVVCGWNFTAALDRQGSVFTWG-KTGEGQCGLGYVDR- 697
Query: 223 EAGDAISPILISGNGPHGPKFQD-----PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
D + P + K +D V VACG HTV++T G +L+SWG G G L
Sbjct: 698 ---DQVVPRCVD-------KLRDVAGSSVVDVACGYTHTVVLTASG-ELYSWGLGEYGQL 746
Query: 278 GTGKTIDFFAP 288
GTG D + P
Sbjct: 747 GTG---DVYQP 754
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 118/310 (38%), Gaps = 81/310 (26%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+ I V G SLAI +AG L+ WG+ + G + P V +VV
Sbjct: 553 TTIAMVACGAQHSLAITDAGELYTWGSG---EDGRLGHGDMRDRAVPRKVMSLLRESVVS 609
Query: 62 VACGSEHVVALVSAGETY---KGED----------------------------LVC---- 86
+CG H L + G + +G + +VC
Sbjct: 610 ASCGGAHTAVLTAKGSVFTFGRGRNGRLGLGDNKWRDTPHPIVGFPQGTSISLVVCGWNF 669
Query: 87 ----------YSWGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTAL 134
++WG GQ GLG DR+ ++ P+ ++ + +V +V CG HT +
Sbjct: 670 TAALDRQGSVFTWGKTGEGQCGLGYVDRD-QVVPRCVDKLRDVAGSSVVDVACGYTHTVV 728
Query: 135 LTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-----LVSVDCG 189
LT +++GLGE GQLG G L P +V +LP L V CG
Sbjct: 729 LT--------ASGELYSWGLGEYGQLGTGDVYQPL-PARV-QLPADALCAPDQLARVYCG 778
Query: 190 LFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV 247
FH+ + +++WG+ GL A+ + E D S Q +
Sbjct: 779 AFHSIATTEQRVMFAWGLNSYGACGLGHTANKDKPERIDCFSS-------------QTEL 825
Query: 248 QVACGAAHTV 257
VACG +T+
Sbjct: 826 VVACGHKYTI 835
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 44/246 (17%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSP-----VWDFHG 56
+ I V G + A+D G+++ WG + G V P + D G
Sbjct: 658 TSISLVVCGWNFTAALDRQGSVFTWGKT----GEGQCGLGYVDRDQVVPRCVDKLRDVAG 713
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKI-IETFN 115
+VV VACG H V L ++GE YSWG GQLG GD L ++ +
Sbjct: 714 SSVVDVACGYTHTVVLTASGE--------LYSWGLGEYGQLGTGDVYQPLPARVQLPADA 765
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
+P + V CG+FH+ T ++ + + +GL G G G T + PE+
Sbjct: 766 LCAPDQLARVYCGAFHSIATTEQR--------VMFAWGLNSYGACGLGHTANKDKPER-- 815
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
+DC T +V + G ++ +E NASL + + P +
Sbjct: 816 ----------IDCFSSQTELVVACGHKYTIALEV------NASLYTHSPSQTMLPTGAAL 859
Query: 236 NGPHGP 241
NG P
Sbjct: 860 NGLEMP 865
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 15/143 (10%)
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCP------N 216
G T L P+ V L +V V CG H ++S GDV+S+G + +
Sbjct: 460 GGTPLVLRPKHVS-LANGQPIVQVACGGEHLLYLTSTGDVYSYGDNEDKKVAAVTVATHT 518
Query: 217 ASLTRNEAGDAIS------PILISGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWSW 269
++L NE+ +S P L+ + + VACGA H++ +TD G +L++W
Sbjct: 519 STLPDNESTRVVSTSSFLAPHLVEELALEKALHRTTIAMVACGAQHSLAITDAG-ELYTW 577
Query: 270 GRGRSGVLGTGKTIDFFAPAIVL 292
G G G LG G D P V+
Sbjct: 578 GSGEDGRLGHGDMRDRAVPRKVM 600
>gi|449676845|ref|XP_002166895.2| PREDICTED: uncharacterized protein LOC100213911, partial [Hydra
magnipapillata]
Length = 725
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 42/247 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV++ACG EH + +G Y +G+N+ GQLGLG +S +P ++
Sbjct: 40 VVEMACGDEHSAVVTESGR--------LYVFGSNDWGQLGLGHTKSLNKPSFVKPL---K 88
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P V +V CG HT + + + ++FG E+GQLGH ++ L+P++++ +P
Sbjct: 89 PEKVRKVACGRNHTIVYSESGK--------LFSFGCNEDGQLGHVDKENELLPKEIESIP 140
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q + + + CG +H+ ++S GDV+ WG E LGL G+ + L
Sbjct: 141 Q-MEIKQIACGTYHSIILSEDGDVYVWGNNNEGQLGL-----------GEEVENSL---- 184
Query: 237 GPHGPKF-QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG--TGKTIDFFAPAIVLW 293
P KF ++ V V+CG HT LVT DG+ L+++G G LG + + + P V
Sbjct: 185 -PKKLKFKKEVVSVSCGYYHTALVTRDGF-LYTFGENELGKLGLSSSQLSNTTVPQSVAM 242
Query: 294 PPLTEEF 300
P +E+
Sbjct: 243 PADNDEY 249
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 133/286 (46%), Gaps = 46/286 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWM-----WGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
+ + G S + +G L++ WG L + + S V P V
Sbjct: 40 VVEMACGDEHSAVVTESGRLYVFGSNDWGQLGLGHTKSLNKPSFVKPLKPEKVR------ 93
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
KVACG H + +G+ +S+G N +GQLG D+E+ L PK IE+ Q
Sbjct: 94 --KVACGRNHTIVYSESGK--------LFSFGCNEDGQLGHVDKENELLPKEIESIPQ-- 141
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ ++ CG++H+ +L+ + + +G GQLG G +P+++K
Sbjct: 142 -MEIKQIACGTYHSIILSE--------DGDVYVWGNNNEGQLGLGEEVENSLPKKLKFKK 192
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +VSV CG +HT++V+ G ++++G E LG L+ ++ + P ++
Sbjct: 193 E---VVSVSCGYYHTALVTRDGFLYTFG-ENELGKL---GLSSSQLSNTTVPQSVA---- 241
Query: 239 HGPKFQDP-VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
P D + V+CGA HTV +T G+ ++WG G G LG G +
Sbjct: 242 -MPADNDEYISVSCGARHTVAITKQGH-CYAWGDGSQGQLGHGTKL 285
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 130/290 (44%), Gaps = 39/290 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G ++ +G L+ +G + G + P + + ++
Sbjct: 91 KVRKVACGRNHTIVYSESGKLFSFG---CNEDGQLGHVDKENELLPKEIESIPQMEIKQI 147
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG+ H + L G+ Y WG NN GQLGLG+ PK ++ F ++ V
Sbjct: 148 ACGTYHSIILSEDGDVY--------VWGNNNEGQLGLGEEVENSLPKKLK-FKKE----V 194
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ--SALVPEQVKELPQY 180
V+CG +HTAL+T + +TFG E G+LG ++Q + VP+ V
Sbjct: 195 VSVSCGYYHTALVTR--------DGFLYTFGENELGKLGLSSSQLSNTTVPQSVAMPADN 246
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+SV CG HT ++ G ++WG L L E + +SG
Sbjct: 247 DEYISVSCGARHTVAITKQGHCYAWGDGSQGQLGHGTKLL--EVNEPKQIKKLSG----- 299
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
Q + V+CG +HT +VT+ G K++++G GR G LG G+ D F+ +
Sbjct: 300 ---QKCISVSCGESHTAVVTESG-KVFTFGDGRHGKLGQGE--DSFSNSF 343
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 31/170 (18%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG----GFSLVSSFTPSPVWDFHGHTVVK 61
SV G ++AI G + WG+ ++G G L+ P + G +
Sbjct: 251 SVSCGARHTVAITKQGHCYAWGD------GSQGQLGHGTKLLEVNEPKQIKKLSGQKCIS 304
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE--SRLRPKIIETFNQDSP 119
V+CG H + +G+ + ++G +G+LG G+ + P + FN
Sbjct: 305 VSCGESHTAVVTESGKVF--------TFGDGRHGKLGQGEDSFSNSFDPVYLSRFNY--- 353
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
+ V V+CG HT +L K +D ++ GEN T+Q +L
Sbjct: 354 FNVVYVSCGGCHTLVLAVHKNKDDFVD--------GENSLRASMTSQKSL 395
>gi|356508943|ref|XP_003523212.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine
max]
Length = 441
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 137/294 (46%), Gaps = 45/294 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+I + G LA+ G + WG N L +TE S P + F G +
Sbjct: 120 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGNTE------DSLVPQKIQAFKGVPI 173
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
VA G+EH VA+ GE Y WG G LGLGDR R P+ + + + D
Sbjct: 174 KMVAAGAEHSVAITENGE--------LYGWGWGRYGNLGLGDRNDRWNPEKVSSVDCDK- 224
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V CG HT ++ +T+G + GQLGHG + +LVP++++ L
Sbjct: 225 --MVMVACGWRHTISVSS--------SGGIYTYGWSKYGQLGHGNFEDSLVPQKLQALSD 274
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNG 237
+ + V G H+ ++S G ++ WG K +G+ N D SP+ +
Sbjct: 275 KL-ISQVSGGWRHSMALTSTGLLFGWGWNKFGQVGVGDNL--------DHCSPVQVKF-- 323
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P+ Q VQ++CG HT+ VT+ ++SWGRG +G LG G TID +P I+
Sbjct: 324 ---PQDQRVVQISCGWRHTIAVTEK-ENVFSWGRGTNGQLGHGDTIDRNSPKII 373
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 118/235 (50%), Gaps = 35/235 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+ ++ G+ H VAL+S ++VC SWG +GQLG GD + R P + +
Sbjct: 16 VLLISAGASHTVALLSG-------NVVC-SWGRGEDGQLGHGDTDDRPLPTQLSALDAQH 67
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ + CG+ HT L + + N++ +++G G+ G+LGHG + L+P+ + L
Sbjct: 68 ---IDSIACGADHT--LAYSESRNEL-----YSWGWGDFGRLGHGNSSDLLIPQPIIAL- 116
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + + CG H V+ G+V SWG + N L D++ P I
Sbjct: 117 QGLRIKQIACGDSHCLAVTMEGEVQSWGRNQ------NGQLGLGNTEDSLVPQKIQ---- 166
Query: 239 HGPKFQD-PVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ P++ VA GA H+V +T++G +L+ WG GR G LG G D + P V
Sbjct: 167 ---AFKGVPIKMVAAGAEHSVAITENG-ELYGWGWGRYGNLGLGDRNDRWNPEKV 217
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 26/173 (15%)
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P V ++ G+ HT L + ++ ++G GE+GQLGHG T +P Q+ L
Sbjct: 13 PSRVLLISAGASHTVAL--------LSGNVVCSWGRGEDGQLGHGDTDDRPLPTQLSALD 64
Query: 179 QYVYLVSVDCGLFHTSVVSSAGD---VWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
++ S+ CG HT S + + W WG LG ++ L + A+ + I
Sbjct: 65 AQ-HIDSIACGADHTLAYSESRNELYSWGWGDFGRLGHGNSSDLLIPQPIIALQGLRIK- 122
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
Q+ACG +H + VT +G ++ SWGR ++G LG G T D P
Sbjct: 123 ------------QIACGDSHCLAVTMEG-EVQSWGRNQNGQLGLGNTEDSLVP 162
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 22/175 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G ++++ ++G ++ +G G + S P + + +V
Sbjct: 224 KMVMVACGWRHTISVSSSGGIYTYG---WSKYGQLGHGNFEDSLVPQKLQALSDKLISQV 280
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL S G + + WG N GQ+G+GD P ++ F QD V
Sbjct: 281 SGGWRHSMALTSTG--------LLFGWGWNKFGQVGVGDNLDHCSPVQVK-FPQDQ--RV 329
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+++CG HT +T ++ +++G G NGQLGHG T P+ ++ L
Sbjct: 330 VQISCGWRHTIAVTEKEN--------VFSWGRGTNGQLGHGDTIDRNSPKIIEAL 376
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I V G S+A+ + G L+ WG S P V VV+++
Sbjct: 277 ISQVSGGWRHSMALTSTGLLFGWGWNKFGQVGVGDNLDHCS---PVQVKFPQDQRVVQIS 333
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
CG H +A+ E +SWG NGQLG GD R PKIIE + D
Sbjct: 334 CGWRHTIAVT--------EKENVFSWGRGTNGQLGHGDTIDRNSPKIIEALSVD 379
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P V L+S G HT + S V SWG + + L + D P +S
Sbjct: 13 PSRVLLIS--AGASHTVALLSGNVVCSWGRGE------DGQLGHGDTDDRPLPTQLSA-- 62
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
Q +ACGA HT+ ++ +L+SWG G G LG G + D P ++
Sbjct: 63 ---LDAQHIDSIACGADHTLAYSESRNELYSWGWGDFGRLGHGNSSDLLIPQPII 114
>gi|357149503|ref|XP_003575134.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Brachypodium
distachyon]
Length = 448
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 136/294 (46%), Gaps = 45/294 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+I + G LA+ +AG + WG N L +TE S P + F G V
Sbjct: 127 KIKQIACGDSHCLAVTDAGQVHSWGRNQNGQLGLGNTE------DSLLPQKIHAFEGVCV 180
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+A G+EH A++ ED Y WG G LGLGDR RL P+ + + +
Sbjct: 181 KMIAAGAEHTAAIL--------EDGDLYGWGWGQYGNLGLGDRNDRLVPEKVSSVEGEK- 231
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V CG HT ++ D+ +T+G + GQLGHG + LVP +++ L
Sbjct: 232 --MVLVACGWRHTVTVS---SSGDL-----YTYGWSKYGQLGHGDFEDHLVPHKLEALKD 281
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNG 237
++ + G HT V+ G ++ WG K +G+ N D SP+ +
Sbjct: 282 R-FISQIAGGWRHTMAVAGDGKLYGWGWNKFGQVGVADNV--------DHCSPVQVIF-- 330
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P Q QVACG HT+ +T++ ++SWGRG SG LG G+ ID P ++
Sbjct: 331 ---PDEQKVAQVACGWRHTLALTEN-KNVFSWGRGTSGQLGHGEIIDRNTPKMI 380
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 118/249 (47%), Gaps = 32/249 (12%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
F P P+ G + ++ACG H +A+ AG+ + SWG N NGQLGLG+ E
Sbjct: 115 FHPQPIEALQGIKIKQIACGDSHCLAVTDAGQVH--------SWGRNQNGQLGLGNTEDS 166
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
L P+ I F V + G+ HTA + + + + +G G+ G LG G
Sbjct: 167 LLPQKIHAFEGV---CVKMIAAGAEHTAAI--------LEDGDLYGWGWGQYGNLGLGDR 215
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
LVPE+V + + +V V CG HT VSS+GD++++G K L +
Sbjct: 216 NDRLVPEKVSSV-EGEKMVLVACGWRHTVTVSSSGDLYTYGWSK------YGQLGHGDFE 268
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
D + P + K + Q+A G HT+ V DG KL+ WG + G +G +D
Sbjct: 269 DHLVPHKLE-----ALKDRFISQIAGGWRHTMAVAGDG-KLYGWGWNKFGQVGVADNVDH 322
Query: 286 FAPAIVLWP 294
+P V++P
Sbjct: 323 CSPVQVIFP 331
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 107/235 (45%), Gaps = 30/235 (12%)
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
TV V+ G+ H VAL+S+ VC SWG +GQLG GD E R P ++ F
Sbjct: 20 QTVALVSAGANHSVALLSS-------KAVC-SWGRGEDGQLGHGDAEDRPVPTLLSGF-- 69
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
D P V CG+ HT + + +++G G+ G+LGHG + P+ ++
Sbjct: 70 DVPGIASVVICGADHTTAYSDEQM-------QLYSWGWGDFGRLGHGNSSDVFHPQPIEA 122
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L Q + + + CG H V+ AG V SWG + N L D++ P I
Sbjct: 123 L-QGIKIKQIACGDSHCLAVTDAGQVHSWGRNQ------NGQLGLGNTEDSLLPQKI--- 172
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
H + +A GA HT + +DG L+ WG G+ G LG G D P V
Sbjct: 173 --HAFEGVCVKMIAAGAEHTAAILEDG-DLYGWGWGQYGNLGLGDRNDRLVPEKV 224
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 165 TQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE 223
++A E+V E P Q V LVS G H+ + S+ V SWG + + L +
Sbjct: 5 AEAAAGDEEVPEAPEQTVALVSA--GANHSVALLSSKAVCSWGRGE------DGQLGHGD 56
Query: 224 AGDAISPILISGNGPHGPKFQDP---VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A D P L+SG F P V CGA HT +D+ +L+SWG G G LG G
Sbjct: 57 AEDRPVPTLLSG-------FDVPGIASVVICGADHTTAYSDEQMQLYSWGWGDFGRLGHG 109
Query: 281 KTIDFFAP 288
+ D F P
Sbjct: 110 NSSDVFHP 117
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 73/220 (33%), Gaps = 68/220 (30%)
Query: 7 VKAGGMMSLAIDNAGALWMWG-----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+ AG + AI G L+ WG N L D + P V G +V
Sbjct: 183 IAAGAEHTAAILEDGDLYGWGWGQYGNLGLGDRNDR--------LVPEKVSSVEGEKMVL 234
Query: 62 VACGSEHVVALVSAGETYK----------------------------------------- 80
VACG H V + S+G+ Y
Sbjct: 235 VACGWRHTVTVSSSGDLYTYGWSKYGQLGHGDFEDHLVPHKLEALKDRFISQIAGGWRHT 294
Query: 81 ---GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
D Y WG N GQ+G+ D P ++ D V +V CG HT LT
Sbjct: 295 MAVAGDGKLYGWGWNKFGQVGVADNVDHCSP--VQVIFPDEQ-KVAQVACGWRHTLALTE 351
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
K +++G G +GQLGHG P+ + L
Sbjct: 352 NKN--------VFSWGRGTSGQLGHGEIIDRNTPKMIDAL 383
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G ++A+ G L+ WG G V +P V V +VA
Sbjct: 284 ISQIAGGWRHTMAVAGDGKLYGWGWNKF---GQVGVADNVDHCSPVQVIFPDEQKVAQVA 340
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
CG H +AL E+ +SWG +GQLG G+ R PK+I+ + D
Sbjct: 341 CGWRHTLALT--------ENKNVFSWGRGTSGQLGHGEIIDRNTPKMIDALSLD 386
>gi|224093583|ref|XP_002309939.1| predicted protein [Populus trichocarpa]
gi|222852842|gb|EEE90389.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 136/294 (46%), Gaps = 43/294 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+I + G LA+ G + WG N L +TE S P + F G ++
Sbjct: 124 KIRQIACGDSHCLAVTMDGEVQSWGRNQNGQLGLGTTE------DSLVPQKIQAFQGVSI 177
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
VA G+EH A+ GE Y WG G LGLGDR RL P+ + N D
Sbjct: 178 KMVAAGAEHTAAVTEDGE--------LYGWGWGRYGNLGLGDRNDRLVPEKVSLVNGDK- 228
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V CG HT ++ +T+G + GQLGHG + L P +V+ L +
Sbjct: 229 --MIMVACGWRHTISVSS--------SGGLYTYGWSKYGQLGHGDFEDHLTPHKVEAL-R 277
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNG 237
Y+ + G HT ++S G+++ WG K +G+ N D SP+ +
Sbjct: 278 DSYISMISGGWRHTMALTSDGNLYGWGWNKFGQVGVGDNI--------DHCSPVQV--KF 327
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
PH + VQ++CG HT+ +T+ ++SWGRG +G LG G+++D P I+
Sbjct: 328 PH-EQAHSLVQISCGWRHTLAITER-QNVFSWGRGTNGQLGHGESMDRNLPKII 379
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 109/235 (46%), Gaps = 35/235 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+ ++ G+ H VAL+S ++VC SWG +GQLG GD E R P + T +
Sbjct: 20 VILISAGASHSVALLSG-------NIVC-SWGRGEDGQLGHGDAEDRPTPTQLSTLD--- 68
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ +TCG+ HT + + +E W G G+ G+LGHG + P+ +K L
Sbjct: 69 GLDIISITCGADHTTSYSESR-----MEVYSW--GWGDFGRLGHGNSSDLFTPQPIKAL- 120
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ + + CG H V+ G+V SWG + N L D++ P I
Sbjct: 121 HSLKIRQIACGDSHCLAVTMDGEVQSWGRNQ------NGQLGLGTTEDSLVPQKIQ---- 170
Query: 239 HGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
FQ VA GA HT VT+DG +L+ WG GR G LG G D P V
Sbjct: 171 ---AFQGVSIKMVAAGAEHTAAVTEDG-ELYGWGWGRYGNLGLGDRNDRLVPEKV 221
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 131/293 (44%), Gaps = 38/293 (12%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ Q+ + AG S+A+ + + WG + G TP+ + G ++
Sbjct: 17 IRQVILISAGASHSVALLSGNIVCSWGR---GEDGQLGHGDAEDRPTPTQLSTLDGLDII 73
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+ CG++H +Y + YSWG + G+LG G+ P+ I+ +
Sbjct: 74 SITCGADHTT-------SYSESRMEVYSWGWGDFGRLGHGNSSDLFTPQPIKALHS---L 123
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ ++ CG H +T ++ ++G +NGQLG GTT+ +LVP++++ Q
Sbjct: 124 KIRQIACGDSHCLAVT--------MDGEVQSWGRNQNGQLGLGTTEDSLVPQKIQAF-QG 174
Query: 181 VYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
V + V G HT+ V+ G++ W WG LGL + D + P +S
Sbjct: 175 VSIKMVAAGAEHTAAVTEDGELYGWGWGRYGNLGL--------GDRNDRLVPEKVS--LV 224
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+G K + VACG HT+ V+ G L+++G + G LG G D P V
Sbjct: 225 NGDKM---IMVACGWRHTISVSSSG-GLYTYGWSKYGQLGHGDFEDHLTPHKV 273
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 101/239 (42%), Gaps = 41/239 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G ++++ ++G L+ +G G TP V + +
Sbjct: 228 KMIMVACGWRHTISVSSSGGLYTYG---WSKYGQLGHGDFEDHLTPHKVEALRDSYISMI 284
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL S G Y WG N GQ+G+GD P ++ F + ++
Sbjct: 285 SGGWRHTMALTSDGN--------LYGWGWNKFGQVGVGDNIDHCSPVQVK-FPHEQAHSL 335
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+++CG HT +T R+ +++G G NGQLGHG + + LP+ +
Sbjct: 336 VQISCGWRHTLAITERQN--------VFSWGRGTNGQLGHGESMD-------RNLPKIIE 380
Query: 183 LVSVDCGLFH----TSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++S D H ++V S G W + ++ +E+G A+S + GNG
Sbjct: 381 VLSADGSGGHQIEASTVDPSLGKSW-------VSPSDRYAIVPDESGQAVS---VGGNG 429
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFH--GHTV 59
S I + G ++A+ + G L+ WG G + +P V H H++
Sbjct: 279 SYISMISGGWRHTMALTSDGNLYGWGWNKF---GQVGVGDNIDHCSPVQVKFPHEQAHSL 335
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+++CG H +A+ E +SWG NGQLG G+ R PKIIE + D
Sbjct: 336 VQISCGWRHTLAIT--------ERQNVFSWGRGTNGQLGHGESMDRNLPKIIEVLSAD 385
>gi|379318630|pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 141/338 (41%), Gaps = 80/338 (23%)
Query: 3 QICSVKAGGMMSLAIDNAGA---LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
QI SV G ++A +G W WG D G + FTP P+ HG +
Sbjct: 59 QIVSVTCGADHTVAYSQSGXEVYSWGWG-----DFGRLGHGNSSDLFTPLPIKALHGIRI 113
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++ACG H +A+ GE SWG N NGQLGLGD E L P+ I+ F
Sbjct: 114 KQIACGDSHCLAVTXEGEVQ--------SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR- 164
Query: 120 WAVYEVTCGSFHTALLTH------------------------------------------ 137
+ V G+ HTA +T
Sbjct: 165 --IKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVAC 222
Query: 138 --RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
R + +T+G + GQLGHG + L+P +++ L ++ + G HT
Sbjct: 223 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSN-SFISQISGGARHTXA 281
Query: 196 VSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++S G ++ WG K +G+ N D SP+ + P Q VQV+CG
Sbjct: 282 LTSDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV-----RFPDDQKVVQVSCGW 328
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ VT+ +++WGRG +G LG G+++D P I+
Sbjct: 329 RHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 365
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 112/244 (45%), Gaps = 35/244 (14%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
+P+ + GH +V V CG++H VA +G YSWG + G+LG G+
Sbjct: 48 SPTQLSALDGHQIVSVTCGADHTVAYSQSGXE-------VYSWGWGDFGRLGHGNSSDLF 100
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P I+ + + ++ CG H +T E ++G +NGQLG G T+
Sbjct: 101 TPLPIKALHGIR---IKQIACGDSHCLAVT--------XEGEVQSWGRNQNGQLGLGDTE 149
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEA 224
+LVP++++ + + + V G HT+ V+ GD+ W WG LGL +
Sbjct: 150 DSLVPQKIQAF-EGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL--------GDR 200
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
D + P ++ G G K VACG HT+ V+ G L+++G + G LG G D
Sbjct: 201 TDRLVPERVTSTG--GEKXS---XVACGWRHTISVSYSG-ALYTYGWSKYGQLGHGDLED 254
Query: 285 FFAP 288
P
Sbjct: 255 HLIP 258
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
V P+ V ++S G H+ + S V SWG + + L +A D SP +
Sbjct: 1 VTAPPRKVLIISA--GASHSVALLSGDIVCSWGRGE------DGQLGHGDAEDRPSPTQL 52
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
S H V V CGA HTV + G +++SWG G G LG G + D F P
Sbjct: 53 SALDGH-----QIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTP 102
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 22/171 (12%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
V G ++++ +GAL+ +G G L P + + +++ G+
Sbjct: 220 VACGWRHTISVSYSGALYTYG---WSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGA 276
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
H AL S G+ Y WG N GQ+G+G+ + P + F D V +V+
Sbjct: 277 RHTXALTSDGK--------LYGWGWNKFGQVGVGNNLDQCSPVQVR-FPDDQK--VVQVS 325
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
CG HT +T R + +G G NGQLG G + P+ ++ L
Sbjct: 326 CGWRHTLAVTERNN--------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 368
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 11/116 (9%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S I + G + A+ + G L+ WG S P V VV+
Sbjct: 267 SFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCS---PVQVRFPDDQKVVQ 323
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+CG H +A+ E ++WG NGQLG+G+ R PKIIE + D
Sbjct: 324 VSCGWRHTLAVT--------ERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVD 371
>gi|255638076|gb|ACU19352.1| unknown [Glycine max]
Length = 440
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 136/294 (46%), Gaps = 45/294 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+I + G LA+ G + WG N L ++E S P + F G +
Sbjct: 119 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGTSE------DSLVPQKIQTFQGVPI 172
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
VA G+EH VA+ GE Y WG G LGLGDR R P+ + + + D
Sbjct: 173 KMVAAGAEHSVAITENGE--------LYGWGWGRYGNLGLGDRNDRWIPEKVSSVDCDK- 223
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V CG HT ++ +T+G + GQLGHG + +LVP++++ L
Sbjct: 224 --MVMVACGWRHTISVSSL--------GGLYTYGWSKYGQLGHGNFEDSLVPQKLQALSD 273
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNG 237
+ + V G H+ ++S G ++ WG K +G+ N D SP+ +
Sbjct: 274 KL-ISQVSGGWRHSMALTSTGLLYGWGWNKFGQVGVGDNV--------DRCSPVQVKF-- 322
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P Q VQ++CG HT+ VT+ ++SWGRG +G LG G T+D +P I+
Sbjct: 323 ---PHDQKVVQISCGWRHTIAVTEK-ENVFSWGRGTNGQLGHGDTVDRNSPKII 372
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 35/235 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+ ++ G+ H VAL+S ++VC SWG +GQLG GD + RL P + +
Sbjct: 15 VLLISAGASHTVALLSG-------NVVC-SWGRGEDGQLGHGDTDDRLLPTHLSALDAQQ 66
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ + CG+ HT L + + N++ +++G G+ G+LGHG + L+P+ + L
Sbjct: 67 ---IDSIACGADHT--LAYSESRNEL-----YSWGWGDFGRLGHGNSSDLLIPQPIIAL- 115
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + + CG H V+ G+V SWG + N L + D++ P I
Sbjct: 116 QGLRIKQIACGDSHCLAVTMEGEVQSWGRNQ------NGQLGLGTSEDSLVPQKIQ---- 165
Query: 239 HGPKFQD-PVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
FQ P++ VA GA H+V +T++G +L+ WG GR G LG G D + P V
Sbjct: 166 ---TFQGVPIKMVAAGAEHSVAITENG-ELYGWGWGRYGNLGLGDRNDRWIPEKV 216
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 26/173 (15%)
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P V ++ G+ HT L + ++ ++G GE+GQLGHG T L+P + L
Sbjct: 12 PSRVLLISAGASHTVAL--------LSGNVVCSWGRGEDGQLGHGDTDDRLLPTHLSALD 63
Query: 179 QYVYLVSVDCGLFHTSVVSSAGD---VWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
+ S+ CG HT S + + W WG LG ++ L + A+ + I
Sbjct: 64 AQ-QIDSIACGADHTLAYSESRNELYSWGWGDFGRLGHGNSSDLLIPQPIIALQGLRIK- 121
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
Q+ACG +H + VT +G ++ SWGR ++G LG G + D P
Sbjct: 122 ------------QIACGDSHCLAVTMEG-EVQSWGRNQNGQLGLGTSEDSLVP 161
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 22/175 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G ++++ + G L+ +G G + S P + + +V
Sbjct: 223 KMVMVACGWRHTISVSSLGGLYTYG---WSKYGQLGHGNFEDSLVPQKLQALSDKLISQV 279
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL S G + Y WG N GQ+G+GD R P ++ F D V
Sbjct: 280 SGGWRHSMALTSTG--------LLYGWGWNKFGQVGVGDNVDRCSPVQVK-FPHDQK--V 328
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+++CG HT +T ++ +++G G NGQLGHG T P+ ++ L
Sbjct: 329 VQISCGWRHTIAVTEKEN--------VFSWGRGTNGQLGHGDTVDRNSPKIIEAL 375
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 11/114 (9%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I V G S+A+ + G L+ WG G V +P V H VV+++
Sbjct: 276 ISQVSGGWRHSMALTSTGLLYGWGWNKF---GQVGVGDNVDRCSPVQVKFPHDQKVVQIS 332
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
CG H +A+ E +SWG NGQLG GD R PKIIE + D
Sbjct: 333 CGWRHTIAVT--------EKENVFSWGRGTNGQLGHGDTVDRNSPKIIEALSVD 378
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P V L+S G HT + S V SWG + + L + D + P +S
Sbjct: 12 PSRVLLIS--AGASHTVALLSGNVVCSWGRGE------DGQLGHGDTDDRLLPTHLSA-- 61
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
Q +ACGA HT+ ++ +L+SWG G G LG G + D P ++
Sbjct: 62 ---LDAQQIDSIACGADHTLAYSESRNELYSWGWGDFGRLGHGNSSDLLIPQPII 113
>gi|356516391|ref|XP_003526878.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine
max]
Length = 440
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 136/294 (46%), Gaps = 45/294 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+I + G LA+ G + WG N L ++E S P + F G +
Sbjct: 119 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGTSE------DSLVPQKIQTFQGVPI 172
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
VA G+EH VA+ GE Y WG G LGLGDR R P+ + + + D
Sbjct: 173 KMVAAGAEHSVAITENGE--------LYGWGWGRYGNLGLGDRNDRWIPEKVSSVDCDK- 223
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V CG HT ++ +T+G + GQLGHG + +LVP++++ L
Sbjct: 224 --MVMVACGWRHTISVSSL--------GGLYTYGWSKYGQLGHGNFEDSLVPQKLQALSD 273
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNG 237
+ + V G H+ ++S G ++ WG K +G+ N D SP+ +
Sbjct: 274 KL-ISQVSGGWRHSMALTSTGLLYGWGWNKFGQVGVGDNV--------DRCSPVQVKF-- 322
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P Q VQ++CG HT+ VT+ ++SWGRG +G LG G T+D +P I+
Sbjct: 323 ---PHDQKVVQISCGWRHTIAVTEK-ENVFSWGRGTNGQLGHGDTVDRNSPKII 372
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 35/235 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+ ++ G+ H VAL+S ++VC SWG +GQLG GD + RL P + +
Sbjct: 15 VLLISAGASHTVALLSG-------NVVC-SWGRGEDGQLGHGDTDDRLLPTHLSALDAQQ 66
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ + CG+ HT L + + N++ +++G G+ G+LGHG + L+P+ + L
Sbjct: 67 ---IDSIACGADHT--LAYSESRNEL-----YSWGWGDFGRLGHGNSSDLLIPQPIIAL- 115
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + + CG H V+ G+V SWG + N L + D++ P I
Sbjct: 116 QGLRIKQIACGDSHCLAVTMEGEVQSWGRNQ------NGQLGLGTSEDSLVPQKIQ---- 165
Query: 239 HGPKFQD-PVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
FQ P++ VA GA H+V +T++G +L+ WG GR G LG G D + P V
Sbjct: 166 ---TFQGVPIKMVAAGAEHSVAITENG-ELYGWGWGRYGNLGLGDRNDRWIPEKV 216
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 26/173 (15%)
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P V ++ G+ HT L + ++ ++G GE+GQLGHG T L+P + L
Sbjct: 12 PSRVLLISAGASHTVAL--------LSGNVVCSWGRGEDGQLGHGDTDDRLLPTHLSALD 63
Query: 179 QYVYLVSVDCGLFHTSVVSSAGD---VWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
+ S+ CG HT S + + W WG LG ++ L + A+ + I
Sbjct: 64 AQ-QIDSIACGADHTLAYSESRNELYSWGWGDFGRLGHGNSSDLLIPQPIIALQGLRIK- 121
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
Q+ACG +H + VT +G ++ SWGR ++G LG G + D P
Sbjct: 122 ------------QIACGDSHCLAVTMEG-EVQSWGRNQNGQLGLGTSEDSLVP 161
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 22/175 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G ++++ + G L+ +G G + S P + + +V
Sbjct: 223 KMVMVACGWRHTISVSSLGGLYTYG---WSKYGQLGHGNFEDSLVPQKLQALSDKLISQV 279
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL S G + Y WG N GQ+G+GD R P ++ F D V
Sbjct: 280 SGGWRHSMALTSTG--------LLYGWGWNKFGQVGVGDNVDRCSPVQVK-FPHDQK--V 328
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+++CG HT +T ++ +++G G NGQLGHG T P+ ++ L
Sbjct: 329 VQISCGWRHTIAVTEKEN--------VFSWGRGTNGQLGHGDTVDRNSPKIIEAL 375
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 11/114 (9%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I V G S+A+ + G L+ WG G V +P V H VV+++
Sbjct: 276 ISQVSGGWRHSMALTSTGLLYGWGWNKF---GQVGVGDNVDRCSPVQVKFPHDQKVVQIS 332
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
CG H +A+ E +SWG NGQLG GD R PKIIE + D
Sbjct: 333 CGWRHTIAVT--------EKENVFSWGRGTNGQLGHGDTVDRNSPKIIEALSVD 378
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P V L+S G HT + S V SWG + + L + D + P +S
Sbjct: 12 PSRVLLIS--AGASHTVALLSGNVVCSWGRGE------DGQLGHGDTDDRLLPTHLSA-- 61
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
Q +ACGA HT+ ++ +L+SWG G G LG G + D P ++
Sbjct: 62 ---LDAQQIDSIACGADHTLAYSESRNELYSWGWGDFGRLGHGNSSDLLIPQPII 113
>gi|115446671|ref|NP_001047115.1| Os02g0554100 [Oryza sativa Japonica Group]
gi|50725773|dbj|BAD33304.1| putative UVB-resistance protein (UVR8) [Oryza sativa Japonica
Group]
gi|113536646|dbj|BAF09029.1| Os02g0554100 [Oryza sativa Japonica Group]
gi|215697683|dbj|BAG91677.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 453
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 133/292 (45%), Gaps = 41/292 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+I + G LA+ AG + WG N L +TE S P + F G V
Sbjct: 135 RITQIACGDSHCLAVTVAGHVHSWGRNQNGQLGLGNTE------DSLLPQKIQAFEGVRV 188
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+A G+EH A+ ED Y WG G LGLGDR+ RL P+ + + N
Sbjct: 189 KMIAAGAEHTAAVT--------EDGDLYGWGWGRYGNLGLGDRDDRLIPEKVSSVNGQK- 239
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V CG HT ++ +T+G + GQLGHG + LVP +++ L
Sbjct: 240 --MVLVACGWRHTITVSS--------SGSIYTYGWSKYGQLGHGDFEDHLVPHKLEALKD 289
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ + G HT +++ G ++ WG K + NE D SP+ ++
Sbjct: 290 TT-ISQISGGWRHTMALAADGKLYGWGWNK----FGQVGVGDNE--DHCSPVQVNF---- 338
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P Q VQVACG HT+ +T+ ++SWGRG SG LG G+ +D P ++
Sbjct: 339 -PNEQKVVQVACGWRHTLALTE-AKNVFSWGRGTSGQLGHGEIVDRNIPKMI 388
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 112/235 (47%), Gaps = 29/235 (12%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+VV ++ G+ H VAL+S G +VC SWG +GQLG GD E R P ++ D
Sbjct: 26 SVVLISAGASHSVALLSGG-------VVC-SWGRGEDGQLGHGDAEDRPVPTVLTAAFDD 77
Query: 118 SPWAVYEVT-CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+P V V CG+ HT + E +++G G+ G+LGHG + P+ ++
Sbjct: 78 APGGVASVVICGADHTTAYSDE-------ELQLYSWGWGDFGRLGHGNSSDVFNPQPIQA 130
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L Q V + + CG H V+ AG V SWG + N L D++ P I
Sbjct: 131 L-QGVRITQIACGDSHCLAVTVAGHVHSWGRNQ------NGQLGLGNTEDSLLPQKIQAF 183
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G + + +A GA HT VT+DG L+ WG GR G LG G D P V
Sbjct: 184 --EGVRVK---MIAAGAEHTAAVTEDG-DLYGWGWGRYGNLGLGDRDDRLIPEKV 232
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 19/120 (15%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
T+ +++ G H +AL + G+ Y WG N GQ+G+GD E P + N+
Sbjct: 291 TISQISGGWRHTMALAADGK--------LYGWGWNKFGQVGVGDNEDHCSPVQVNFPNEQ 342
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V +V CG HT LT K +++G G +GQLGHG +P+ + L
Sbjct: 343 K---VVQVACGWRHTLALTEAKN--------VFSWGRGTSGQLGHGEIVDRNIPKMIDAL 391
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 172 EQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPI 231
E V E P+ +V + G H+ + S G V SWG + + L +A D P
Sbjct: 17 EAVPEAPER-SVVLISAGASHSVALLSGGVVCSWGRGE------DGQLGHGDAEDRPVPT 69
Query: 232 LISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+++ P V V CGA HT +D+ +L+SWG G G LG G + D F P
Sbjct: 70 VLTAAFDDAPGGVASV-VICGADHTTAYSDEELQLYSWGWGDFGRLGHGNSSDVFNP 125
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV+VACG H +AL A + SWG +GQLG G+ R PK+I+ + D
Sbjct: 344 VVQVACGWRHTLALTEAKNVF--------SWGRGTSGQLGHGEIVDRNIPKMIDALSSD 394
>gi|218190962|gb|EEC73389.1| hypothetical protein OsI_07634 [Oryza sativa Indica Group]
Length = 448
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 133/292 (45%), Gaps = 41/292 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+I + G LA+ AG + WG N L +TE S P + F G V
Sbjct: 130 RITQIACGDSHCLAVTVAGHVHSWGRNQNGQLGLGNTE------DSLLPQKIQAFEGVRV 183
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+A G+EH A+ ED Y WG G LGLGDR+ RL P+ + + N
Sbjct: 184 KMIAAGAEHTAAVT--------EDGDLYGWGWGRYGNLGLGDRDDRLIPEKVSSVNGQK- 234
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V CG HT ++ +T+G + GQLGHG + LVP +++ L
Sbjct: 235 --MVLVACGWRHTITVSS--------SGSIYTYGWSKYGQLGHGDFEDHLVPHKLEALKD 284
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ + G HT +++ G ++ WG K + NE D SP+ ++
Sbjct: 285 TT-ISQISGGWRHTMALAADGKLYGWGWNK----FGQVGVGDNE--DHCSPVQVNF---- 333
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P Q VQVACG HT+ +T+ ++SWGRG SG LG G+ +D P ++
Sbjct: 334 -PNEQKVVQVACGWRHTLALTE-AKNVFSWGRGTSGQLGHGEIVDRNIPKMI 383
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 112/235 (47%), Gaps = 29/235 (12%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+VV ++ G+ H VAL+S G +VC SWG +GQLG GD E R P ++ D
Sbjct: 21 SVVLISAGASHSVALLSGG-------VVC-SWGRGEDGQLGHGDAEDRPVPTVLTAAFDD 72
Query: 118 SPWAVYEVT-CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+P V V CG+ HT + E +++G G+ G+LGHG + P+ ++
Sbjct: 73 APGGVASVVICGADHTTAYSDE-------ELQLYSWGWGDFGRLGHGNSSDVFNPQPIQA 125
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L Q V + + CG H V+ AG V SWG + N L D++ P I
Sbjct: 126 L-QGVRITQIACGDSHCLAVTVAGHVHSWGRNQ------NGQLGLGNTEDSLLPQKIQAF 178
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G + + +A GA HT VT+DG L+ WG GR G LG G D P V
Sbjct: 179 --EGVRVK---MIAAGAEHTAAVTEDG-DLYGWGWGRYGNLGLGDRDDRLIPEKV 227
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 19/120 (15%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
T+ +++ G H +AL + G+ Y WG N GQ+G+GD E P + N+
Sbjct: 286 TISQISGGWRHTMALAADGK--------LYGWGWNKFGQVGVGDNEDHCSPVQVNFPNEQ 337
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V +V CG HT LT K +++G G +GQLGHG +P+ + L
Sbjct: 338 K---VVQVACGWRHTLALTEAKN--------VFSWGRGTSGQLGHGEIVDRNIPKMIDAL 386
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 172 EQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPI 231
E V E P+ +V + G H+ + S G V SWG + + L +A D P
Sbjct: 12 EAVPEAPER-SVVLISAGASHSVALLSGGVVCSWGRGE------DGQLGHGDAEDRPVPT 64
Query: 232 LISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+++ P V V CGA HT +D+ +L+SWG G G LG G + D F P
Sbjct: 65 VLTAAFDDAPGGVASV-VICGADHTTAYSDEELQLYSWGWGDFGRLGHGNSSDVFNP 120
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV+VACG H +AL A + SWG +GQLG G+ R PK+I+ + D
Sbjct: 339 VVQVACGWRHTLALTEAKNVF--------SWGRGTSGQLGHGEIVDRNIPKMIDALSSD 389
>gi|297797389|ref|XP_002866579.1| UVB-resistance 8 [Arabidopsis lyrata subsp. lyrata]
gi|297312414|gb|EFH42838.1| UVB-resistance 8 [Arabidopsis lyrata subsp. lyrata]
Length = 440
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 144/338 (42%), Gaps = 80/338 (23%)
Query: 3 QICSVKAGGMMSLAIDNAGA---LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
QI SV G ++A +G W WG D G + FTP P+ HG +
Sbjct: 68 QIVSVTCGADHTVAYSQSGMEVYSWGWG-----DFGRLGHGNSSDLFTPLPIKALHGIRI 122
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++ACG H +A+ GE SWG N NGQLGLGD E L P+ I+ F
Sbjct: 123 KQIACGDSHCLAVTMEGEVQ--------SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR- 173
Query: 120 WAVYEVTCGSFHTALLTHRKR----------------PNDML----------ESMC---- 149
+ V G+ HTA +T ND L E M
Sbjct: 174 --IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRNDRLVPERVTSAGGEKMSMVAC 231
Query: 150 --------------WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
+T+G + GQLGHG + L+P +++ L ++ + G HT
Sbjct: 232 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNS-FISQISGGWRHTMA 290
Query: 196 VSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++S G ++ WG K +G+ N D SP+ + P Q VQV+CG
Sbjct: 291 LTSDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV-----RFPDDQKVVQVSCGW 337
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ VT+ +++WGRG +G LG G+++D P I+
Sbjct: 338 RHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 374
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 35/244 (14%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
+P+ + GH +V V CG++H VA +G + YSWG + G+LG G+
Sbjct: 57 SPTQLSALDGHQIVSVTCGADHTVAYSQSG-------MEVYSWGWGDFGRLGHGNSSDLF 109
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P I+ + + ++ CG H +T +E ++G +NGQLG G T+
Sbjct: 110 TPLPIKALHGIR---IKQIACGDSHCLAVT--------MEGEVQSWGRNQNGQLGLGDTE 158
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEA 224
+LVP++++ + + + V G HT+ V+ GD+ W WG LGL +
Sbjct: 159 DSLVPQKIQAF-EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL--------GDR 209
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
D + P ++ G G K VACG HT+ V+ G L+++G + G LG G D
Sbjct: 210 NDRLVPERVTSAG--GEKMS---MVACGWRHTISVSYSG-ALYTYGWSKYGQLGHGDLED 263
Query: 285 FFAP 288
P
Sbjct: 264 HLIP 267
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 169 LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
+ ++V P+ V ++S G H+ + S V SWG + + L +A D
Sbjct: 5 MAADEVTAPPRTVLIIS--AGASHSVALLSGDIVCSWGRGE------DGQLGHGDAEDRP 56
Query: 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
SP +S H V V CGA HTV + G +++SWG G G LG G + D F P
Sbjct: 57 SPTQLSALDGH-----QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTP 111
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 29/185 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G ++++ +GAL+ +G G L P + + ++
Sbjct: 225 KMSMVACGWRHTISVSYSGALYTYG---WSKYGQLGHGDLEDHLIPHKLEALSNSFISQI 281
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL S G+ Y WG N GQ+G+G+ + P + F D V
Sbjct: 282 SGGWRHTMALTSDGK--------LYGWGWNKFGQVGVGNNLDQCSPVQVR-FPDDQK--V 330
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V+CG HT +T R + +G G NGQLG G + + P+ +
Sbjct: 331 VQVSCGWRHTLAVTERNN--------VFAWGRGTNGQLGIGESVD-------RNFPKIIE 375
Query: 183 LVSVD 187
+SVD
Sbjct: 376 ALSVD 380
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S I + G ++A+ + G L+ WG S P V VV+
Sbjct: 276 SFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS---PVQVRFPDDQKVVQ 332
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+CG H +A+ E ++WG NGQLG+G+ R PKIIE + D
Sbjct: 333 VSCGWRHTLAVT--------ERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVD 380
>gi|449457319|ref|XP_004146396.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Cucumis
sativus]
Length = 438
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 136/295 (46%), Gaps = 47/295 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+I + G LA+ G + WG N L +TE S P + F G ++
Sbjct: 114 KIRQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGTTE------DSLVPQKIQAFEGISI 167
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
VA G+EH A+ GE + WG G LGLGDR RL P+ + + + D
Sbjct: 168 KMVAAGAEHTAAVTEDGE--------LFGWGWGRYGNLGLGDRNDRLVPQKVSSVDGDK- 218
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V CG HT ++ +T+G + GQLGHG + LVP +++ L +
Sbjct: 219 --MVMVACGWRHTISVSSL--------GGLYTYGWSKYGQLGHGDFEDRLVPHRLEAL-R 267
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI---SPILISGN 236
+ + G HT +++ G ++ WG K + AGD I SPI I
Sbjct: 268 GDNISQISGGWRHTMALTTDGKLYGWGWNK---------FGQVGAGDNIDHCSPIQIKF- 317
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P+ Q +Q++CG HT+ VTD ++SWGRG +G LG G+++D P I+
Sbjct: 318 ----PQDQKVIQISCGWRHTLAVTDK-QNVFSWGRGTNGQLGHGESVDRNTPMIL 367
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 110/233 (47%), Gaps = 31/233 (13%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+ ++ G+ H VAL+S ++VC SWG +GQLG GD E RL P + +
Sbjct: 10 VLFISAGASHSVALLSG-------NIVC-SWGRGEDGQLGHGDAEDRLSPTQLSALDGHE 61
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ VTCG+ HT + + + +++G G+ G+LGHG + L P+ +K L
Sbjct: 62 ---IVSVTCGADHTTAYS-------VARTEVYSWGWGDFGRLGHGNSSDLLTPKPIKAL- 110
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ + + CG H V+ G+V SWG + N L D++ P I
Sbjct: 111 HGLKIRQIACGDSHCLAVTMEGEVQSWGRNQ------NGQLGLGTTEDSLVPQKIQAFEG 164
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K VA GA HT VT+DG +L+ WG GR G LG G D P V
Sbjct: 165 ISIKM-----VAAGAEHTAAVTEDG-ELFGWGWGRYGNLGLGDRNDRLVPQKV 211
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 130/290 (44%), Gaps = 38/290 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ ++ + AG S+A+ + + WG + G +P+ + GH +V
Sbjct: 7 VRRVLFISAGASHSVALLSGNIVCSWGR---GEDGQLGHGDAEDRLSPTQLSALDGHEIV 63
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V CG++H A Y YSWG + G+LG G+ L PK I+ +
Sbjct: 64 SVTCGADHTTA-------YSVARTEVYSWGWGDFGRLGHGNSSDLLTPKPIKALH---GL 113
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ ++ CG H +T +E ++G +NGQLG GTT+ +LVP++++ +
Sbjct: 114 KIRQIACGDSHCLAVT--------MEGEVQSWGRNQNGQLGLGTTEDSLVPQKIQAF-EG 164
Query: 181 VYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ + V G HT+ V+ G++ W WG LGL + D + P +S
Sbjct: 165 ISIKMVAAGAEHTAAVTEDGELFGWGWGRYGNLGL--------GDRNDRLVPQKVS--SV 214
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
G K V VACG HT+ V+ G L+++G + G LG G D P
Sbjct: 215 DGDKM---VMVACGWRHTISVSSLG-GLYTYGWSKYGQLGHGDFEDRLVP 260
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G ++A+ G L+ WG G + +P + V++++
Sbjct: 271 ISQISGGWRHTMALTTDGKLYGWGWNKF---GQVGAGDNIDHCSPIQIKFPQDQKVIQIS 327
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
CG H +A+ + +SWG NGQLG G+ R P I+E + D
Sbjct: 328 CGWRHTLAVT--------DKQNVFSWGRGTNGQLGHGESVDRNTPMILEALSVD 373
>gi|379318631|pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
gi|379318632|pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
gi|379318633|pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
gi|379318634|pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 141/338 (41%), Gaps = 80/338 (23%)
Query: 3 QICSVKAGGMMSLAIDNAGA---LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
QI SV G ++A +G W WG D G + FTP P+ HG +
Sbjct: 57 QIVSVTCGADHTVAYSQSGMEVYSWGWG-----DFGRLGHGNSSDLFTPLPIKALHGIRI 111
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++ACG H +A+ GE SWG N NGQLGLGD E L P+ I+ F
Sbjct: 112 KQIACGDSHCLAVTMEGEVQ--------SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR- 162
Query: 120 WAVYEVTCGSFHTALLTH------------------------------------------ 137
+ V G+ HTA +T
Sbjct: 163 --IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC 220
Query: 138 --RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
R + +T+G + GQLGHG + L+P +++ L ++ + G HT
Sbjct: 221 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSN-SFISQISGGFRHTMA 279
Query: 196 VSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++S G ++ WG K +G+ N D SP+ + P Q VQV+CG
Sbjct: 280 LTSDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV-----RFPDDQKVVQVSCGW 326
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ VT+ +++WGRG +G LG G+++D P I+
Sbjct: 327 RHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 363
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 35/244 (14%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
+P+ + GH +V V CG++H VA +G + YSWG + G+LG G+
Sbjct: 46 SPTQLSALDGHQIVSVTCGADHTVAYSQSG-------MEVYSWGWGDFGRLGHGNSSDLF 98
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P I+ + + ++ CG H +T +E ++G +NGQLG G T+
Sbjct: 99 TPLPIKALHGIR---IKQIACGDSHCLAVT--------MEGEVQSWGRNQNGQLGLGDTE 147
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEA 224
+LVP++++ + + + V G HT+ V+ GD+ W WG LGL +
Sbjct: 148 DSLVPQKIQAF-EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL--------GDR 198
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
D + P ++ G G K VACG HT+ V+ G L+++G + G LG G D
Sbjct: 199 TDRLVPERVTSTG--GEKMS---MVACGWRHTISVSYSG-ALYTYGWSKYGQLGHGDLED 252
Query: 285 FFAP 288
P
Sbjct: 253 HLIP 256
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P+ V ++S G H+ + S V SWG + + L +A D SP +S
Sbjct: 3 PRKVLIISA--GASHSVALLSGDIVCSWGRGE------DGQLGHGDAEDRPSPTQLSALD 54
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
H V V CGA HTV + G +++SWG G G LG G + D F P
Sbjct: 55 GH-----QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTP 100
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 22/175 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G ++++ +GAL+ +G G L P + + ++
Sbjct: 214 KMSMVACGWRHTISVSYSGALYTYG---WSKYGQLGHGDLEDHLIPHKLEALSNSFISQI 270
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL S G+ Y WG N GQ+G+G+ + P + F D V
Sbjct: 271 SGGFRHTMALTSDGK--------LYGWGWNKFGQVGVGNNLDQCSPVQVR-FPDDQK--V 319
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+V+CG HT +T R + +G G NGQLG G + P+ ++ L
Sbjct: 320 VQVSCGWRHTLAVTERNN--------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S I + G ++A+ + G L+ WG S P V VV+
Sbjct: 265 SFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS---PVQVRFPDDQKVVQ 321
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+CG H +A+ E ++WG NGQLG+G+ R PKIIE + D
Sbjct: 322 VSCGWRHTLAVT--------ERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVD 369
>gi|255563857|ref|XP_002522929.1| uvb-resistance protein uvr8, putative [Ricinus communis]
gi|223537856|gb|EEF39472.1| uvb-resistance protein uvr8, putative [Ricinus communis]
Length = 437
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 119/251 (47%), Gaps = 36/251 (14%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
FTP P+ HG + ++ACG H +A+ G+ SWG N NGQLGLG E
Sbjct: 108 FTPQPIRQLHGLKIKQIACGDSHCLAVTMEGQVQ--------SWGRNQNGQLGLGTTEDS 159
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
L P+ I+ F Q P + V G+ HTA +T + + +G G G LG G
Sbjct: 160 LVPQKIQAF-QGVP--IKMVAAGAEHTAAVTE--------DGELYGWGWGRYGNLGLGDR 208
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNE 223
+ LVPE+V LP +V V CG HT VSS+G ++++G K LG A
Sbjct: 209 KDRLVPEKVS-LPHGEKMVMVACGWRHTISVSSSGGLYTYGWSKYGQLGHGDYADHLIPH 267
Query: 224 AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
+A+ IS Q++ G HT+ VT DG KL+ WG + G +G G +
Sbjct: 268 QLEALQGSFIS-------------QISGGWRHTMAVTSDG-KLYGWGWNKFGQVGVGDNV 313
Query: 284 DFFAPAIVLWP 294
D +P V P
Sbjct: 314 DRSSPVQVKLP 324
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 116/238 (48%), Gaps = 35/238 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+ ++ G+ H VAL+S ++VC +WG +GQLG GD + RL P I+ T
Sbjct: 16 VLLISAGASHSVALLSG-------NVVC-TWGRGEDGQLGHGDAQDRLSPTILSTLE--- 64
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ V CG+ HT + + + D+ +++G G+ G+LGHG + P+ +++L
Sbjct: 65 GLEIISVICGADHT--IAYSESHTDV-----YSWGWGDFGRLGHGNSSDLFTPQPIRQL- 116
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ + + CG H V+ G V SWG + N L D++ P I
Sbjct: 117 HGLKIKQIACGDSHCLAVTMEGQVQSWGRNQ------NGQLGLGTTEDSLVPQKIQ---- 166
Query: 239 HGPKFQD-PVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
FQ P++ VA GA HT VT+DG +L+ WG GR G LG G D P V P
Sbjct: 167 ---AFQGVPIKMVAAGAEHTAAVTEDG-ELYGWGWGRYGNLGLGDRKDRLVPEKVSLP 220
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 130/290 (44%), Gaps = 38/290 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ ++ + AG S+A+ + + WG + G +P+ + G ++
Sbjct: 13 VRRVLLISAGASHSVALLSGNVVCTWGR---GEDGQLGHGDAQDRLSPTILSTLEGLEII 69
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V CG++H +A Y YSWG + G+LG G+ P+ I +
Sbjct: 70 SVICGADHTIA-------YSESHTDVYSWGWGDFGRLGHGNSSDLFTPQPIRQLH---GL 119
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ ++ CG H +T +E ++G +NGQLG GTT+ +LVP++++ Q
Sbjct: 120 KIKQIACGDSHCLAVT--------MEGQVQSWGRNQNGQLGLGTTEDSLVPQKIQAF-QG 170
Query: 181 VYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
V + V G HT+ V+ G++ W WG LGL + D + P +S P
Sbjct: 171 VPIKMVAAGAEHTAAVTEDGELYGWGWGRYGNLGL--------GDRKDRLVPEKVS--LP 220
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
HG K V VACG HT+ V+ G L+++G + G LG G D P
Sbjct: 221 HGEKM---VMVACGWRHTISVSSSG-GLYTYGWSKYGQLGHGDYADHLIP 266
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 30/225 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G ++++ ++G L+ +G G P + G + ++
Sbjct: 224 KMVMVACGWRHTISVSSSGGLYTYG---WSKYGQLGHGDYADHLIPHQLEALQGSFISQI 280
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +A+ S G+ Y WG N GQ+G+GD R P ++ + V
Sbjct: 281 SGGWRHTMAVTSDGK--------LYGWGWNKFGQVGVGDNVDRSSPVQVKLPLEQK---V 329
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++CG HT +T R+ +++G G NGQLG+G VP +K L
Sbjct: 330 ILISCGWRHTLAVTERQN--------VFSWGRGTNGQLGNGECTDRNVPVIIKALS---- 377
Query: 183 LVSVDCG--LFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
V CG + + V SS+G W E+ + P+ S + +G
Sbjct: 378 -VDGSCGQHIESSMVDSSSGKTWVLPSER-YAVVPDESAQTDGSG 420
>gi|5478530|gb|AAD43920.1|AF130441_1 UVB-resistance protein UVR8 [Arabidopsis thaliana]
Length = 440
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 145/338 (42%), Gaps = 80/338 (23%)
Query: 3 QICSVKAGGMMSLAIDNAGA---LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
QI SV G ++A +G W WG D G + FTP P+ HG +
Sbjct: 68 QIVSVTCGADHTVAYSQSGMEVYSWGWG-----DFGRLGHGNSSDLFTPLPIKALHGIRI 122
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++ACG H +A+ GE SWG N NGQLGLGD E L P+ I+ F + P
Sbjct: 123 KQIACGDSHCLAVTMEGEVQ--------SWGRNQNGQLGLGDTEDSLVPQKIQAF-EGIP 173
Query: 120 WAVYEVTCGSFHTALLTH----------------------RKRPNDMLES---------- 147
+ V G+ HTA +T R P + +
Sbjct: 174 --IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC 231
Query: 148 ------------MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
+T+G + GQLGHG + L+P +++ L ++ + G HT
Sbjct: 232 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNS-FISQISGGWRHTMA 290
Query: 196 VSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++S G ++ WG K +G+ N D SP+ + P Q VQV+CG
Sbjct: 291 LTSDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV-----RFPDDQKVVQVSCGW 337
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ VT+ +++WGRG +G LG G+++D P I+
Sbjct: 338 RHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 374
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 35/244 (14%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
+P+ + GH +V V CG++H VA +G + YSWG + G+LG G+
Sbjct: 57 SPTQLSALDGHQIVSVTCGADHTVAYSQSG-------MEVYSWGWGDFGRLGHGNSSDLF 109
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P I+ + + ++ CG H +T +E ++G +NGQLG G T+
Sbjct: 110 TPLPIKALHGIR---IKQIACGDSHCLAVT--------MEGEVQSWGRNQNGQLGLGDTE 158
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEA 224
+LVP++++ + + + V G HT+ V+ GD+ W WG LGL +
Sbjct: 159 DSLVPQKIQAF-EGIPIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL--------GDR 209
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
D + P ++ G G K VACG HT+ V+ G L+++G + G LG G D
Sbjct: 210 TDRLVPERVTSTG--GEKMS---MVACGWRHTISVSYSG-ALYTYGWSKYGQLGHGDLED 263
Query: 285 FFAP 288
P
Sbjct: 264 HLIP 267
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 169 LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
+ ++V P+ V ++S G H+ + S V SWG + + L +A D
Sbjct: 5 MAADEVTAPPRKVLIIS--AGASHSVALLSGDIVCSWGRGE------DGQLGHGDAEDRP 56
Query: 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
SP +S H V V CGA HTV + G +++SWG G G LG G + D F P
Sbjct: 57 SPTQLSALDGH-----QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTP 111
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 29/185 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G ++++ +GAL+ +G G L P + + ++
Sbjct: 225 KMSMVACGWRHTISVSYSGALYTYG---WSKYGQLGHGDLEDHLIPHKLEALSNSFISQI 281
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL S G+ Y WG N GQ+G+G+ + P + F D V
Sbjct: 282 SGGWRHTMALTSDGK--------LYGWGWNKFGQVGVGNNLDQCSPVQVR-FPDDQ--KV 330
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V+CG HT +T R + +G G NGQLG G + + P+ +
Sbjct: 331 VQVSCGWRHTLAVTERNN--------VFAWGRGTNGQLGIGESVD-------RNFPKIIE 375
Query: 183 LVSVD 187
+SVD
Sbjct: 376 ALSVD 380
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S I + G ++A+ + G L+ WG S P V VV+
Sbjct: 276 SFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS---PVQVRFPDDQKVVQ 332
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+CG H +A+ E ++WG NGQLG+G+ R PKIIE + D
Sbjct: 333 VSCGWRHTLAVT--------ERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVD 380
>gi|15237540|ref|NP_201191.1| protein UV-B resistance 8 [Arabidopsis thaliana]
gi|10177674|dbj|BAB11034.1| UVB-resistance protein UVR8 [Arabidopsis thaliana]
gi|21928123|gb|AAM78089.1| AT5g63860/MGI19_6 [Arabidopsis thaliana]
gi|23308399|gb|AAN18169.1| At5g63860/MGI19_6 [Arabidopsis thaliana]
gi|332010422|gb|AED97805.1| protein UV-B resistance 8 [Arabidopsis thaliana]
Length = 440
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 143/338 (42%), Gaps = 80/338 (23%)
Query: 3 QICSVKAGGMMSLAIDNAGA---LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
QI SV G ++A +G W WG D G + FTP P+ HG +
Sbjct: 68 QIVSVTCGADHTVAYSQSGMEVYSWGWG-----DFGRLGHGNSSDLFTPLPIKALHGIRI 122
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++ACG H +A+ GE SWG N NGQLGLGD E L P+ I+ F
Sbjct: 123 KQIACGDSHCLAVTMEGEVQ--------SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR- 173
Query: 120 WAVYEVTCGSFHTALLTH----------------------RKRPNDMLES---------- 147
+ V G+ HTA +T R P + +
Sbjct: 174 --IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC 231
Query: 148 ------------MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
+T+G + GQLGHG + L+P +++ L ++ + G HT
Sbjct: 232 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNS-FISQISGGWRHTMA 290
Query: 196 VSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++S G ++ WG K +G+ N D SP+ + P Q VQV+CG
Sbjct: 291 LTSDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV-----RFPDDQKVVQVSCGW 337
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ VT+ +++WGRG +G LG G+++D P I+
Sbjct: 338 RHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 374
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 35/244 (14%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
+P+ + GH +V V CG++H VA +G + YSWG + G+LG G+
Sbjct: 57 SPTQLSALDGHQIVSVTCGADHTVAYSQSG-------MEVYSWGWGDFGRLGHGNSSDLF 109
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P I+ + + ++ CG H +T +E ++G +NGQLG G T+
Sbjct: 110 TPLPIKALHGIR---IKQIACGDSHCLAVT--------MEGEVQSWGRNQNGQLGLGDTE 158
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEA 224
+LVP++++ + + + V G HT+ V+ GD+ W WG LGL +
Sbjct: 159 DSLVPQKIQAF-EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL--------GDR 209
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
D + P ++ G G K VACG HT+ V+ G L+++G + G LG G D
Sbjct: 210 TDRLVPERVTSTG--GEKMS---MVACGWRHTISVSYSG-ALYTYGWSKYGQLGHGDLED 263
Query: 285 FFAP 288
P
Sbjct: 264 HLIP 267
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 169 LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
+ ++V P+ V ++S G H+ + S V SWG + + L +A D
Sbjct: 5 MAADEVTAPPRKVLIIS--AGASHSVALLSGDIVCSWGRGE------DGQLGHGDAEDRP 56
Query: 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
SP +S H V V CGA HTV + G +++SWG G G LG G + D F P
Sbjct: 57 SPTQLSALDGH-----QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTP 111
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 22/175 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G ++++ +GAL+ +G G L P + + ++
Sbjct: 225 KMSMVACGWRHTISVSYSGALYTYG---WSKYGQLGHGDLEDHLIPHKLEALSNSFISQI 281
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL S G+ Y WG N GQ+G+G+ + P + F D V
Sbjct: 282 SGGWRHTMALTSDGK--------LYGWGWNKFGQVGVGNNLDQCSPVQVR-FPDDQK--V 330
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+V+CG HT +T R + +G G NGQLG G + P+ ++ L
Sbjct: 331 VQVSCGWRHTLAVTERNN--------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 377
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S I + G ++A+ + G L+ WG S P V VV+
Sbjct: 276 SFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS---PVQVRFPDDQKVVQ 332
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+CG H +A+ E ++WG NGQLG+G+ R PKIIE + D
Sbjct: 333 VSCGWRHTLAVT--------ERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVD 380
>gi|428179449|gb|EKX48320.1| hypothetical protein GUITHDRAFT_162457 [Guillardia theta CCMP2712]
Length = 580
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 123/254 (48%), Gaps = 34/254 (13%)
Query: 40 FSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL 99
F + SFT +G + VACG H VA+ GE SWG N GQLG
Sbjct: 55 FPVSLSFTALAHESLNG--AIYVACGGHHTVAVTEDGEVV--------SWGWGNEGQLGS 104
Query: 100 GDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQ 159
G+ + P +++ S V V CG +HTA++T D+ MCW G G +GQ
Sbjct: 105 GNAFDQTVPAVVKAL---SNHRVCGVACGYYHTAVVT------DVGLVMCW--GKGNSGQ 153
Query: 160 LGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM--EKGLGLCPNA 217
LG G S+L+P V L + + CG+ HT +S G+++SWG + LG+ +
Sbjct: 154 LGQGDWTSSLLPRTVSTLYNE-KIRQIACGMAHTLALSVNGEIYSWGAGADGQLGVGKH- 211
Query: 218 SLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
+ E D +P + + +F +ACG+ H + +TDD +L+SWG G G L
Sbjct: 212 ---QEETADVATPQKVRVDEEEKFEF-----IACGSRHCMAITDD-CRLFSWGLGADGRL 262
Query: 278 GTGKTIDFFAPAIV 291
G G + F+P +V
Sbjct: 263 GLGDSESRFSPTVV 276
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 136/301 (45%), Gaps = 48/301 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++C V G + + + G + WG +S G SS P V + + ++
Sbjct: 123 RVCGVACGYYHTAVVTDVGLVMCWGK---GNSGQLGQGDWTSSLLPRTVSTLYNEKIRQI 179
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG H +AL GE Y SWGA +GQLG+G + ET + +P V
Sbjct: 180 ACGMAHTLALSVNGEIY--------SWGAGADGQLGVGKHQE-------ETADVATPQKV 224
Query: 123 -------YE-VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
+E + CGS H +T R +++GLG +G+LG G ++S P V
Sbjct: 225 RVDEEEKFEFIACGSRHCMAITDDCR--------LFSWGLGADGRLGLGDSESRFSPTVV 276
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLC-PNASLTRNEAGDAIS 229
+ + + + V G HT+V+S G++++ G + G G P +L + A
Sbjct: 277 RRSIENLRICYVAAGGHHTAVLSDNGEIFTCGRGSYGQLGHGDADPQLTLKKARALRHGC 336
Query: 230 PILISGNGPHGPKFQDP--VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
+L H + +D ++ ACG HT++++ G ++++WG G LGTG T +
Sbjct: 337 LLL------HIVQLRDKKIIKAACGDTHTLVISTAG-EVFAWGAAEDGQLGTGGTEGANS 389
Query: 288 P 288
P
Sbjct: 390 P 390
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 101/216 (46%), Gaps = 43/216 (19%)
Query: 95 GQLGLGDRESRLRPKIIETFNQDSP--------------WAVYEVTCGSFHTALLTHRKR 140
G+LG GD S+L PK + F++ P A+Y V CG HT +T
Sbjct: 33 GRLGHGDTLSQLEPKRLR-FDKRFPVSLSFTALAHESLNGAIY-VACGGHHTVAVT---- 86
Query: 141 PNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAG 200
+ E + W G G GQLG G VP VK L + + V CG +HT+VV+ G
Sbjct: 87 --EDGEVVSW--GWGNEGQLGSGNAFDQTVPAVVKALSNH-RVCGVACGYYHTAVVTDVG 141
Query: 201 DVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV-QVACGAAHTVLV 259
V WG KG + L + + ++ P +S + + + Q+ACG AHT+ +
Sbjct: 142 LVMCWG--KG----NSGQLGQGDWTSSLLPRTVS------TLYNEKIRQIACGMAHTLAL 189
Query: 260 TDDGYKLWSWGRGRSGVLGTGK----TIDFFAPAIV 291
+ +G +++SWG G G LG GK T D P V
Sbjct: 190 SVNG-EIYSWGAGADGQLGVGKHQEETADVATPQKV 224
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 65/155 (41%), Gaps = 30/155 (19%)
Query: 153 GLGENGQLGHGTTQSALVPEQV---KELPQYVYLVS-----------VDCGLFHTSVVSS 198
G GE G+LGHG T S L P+++ K P + + V CG HT V+
Sbjct: 28 GWGEFGRLGHGDTLSQLEPKRLRFDKRFPVSLSFTALAHESLNGAIYVACGGHHTVAVTE 87
Query: 199 AGDV--WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHT 256
G+V W WG E LG A D P ++ H VACG HT
Sbjct: 88 DGEVVSWGWGNEGQLG--------SGNAFDQTVPAVVKALSNH-----RVCGVACGYYHT 134
Query: 257 VLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+VTD G + WG+G SG LG G P V
Sbjct: 135 AVVTDVGL-VMCWGKGNSGQLGQGDWTSSLLPRTV 168
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 21/142 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPL---------PDSSTEGGFSLVSSFTPSPVWD 53
+IC V AGG + + + G ++ G P + + +L +
Sbjct: 284 RICYVAAGGHHTAVLSDNGEIFTCGRGSYGQLGHGDADPQLTLKKARALRHGCLLLHIVQ 343
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
++K ACG H + + +AGE + +WGA +GQLG G E P + +
Sbjct: 344 LRDKKIIKAACGDTHTLVISTAGEVF--------AWGAAEDGQLGTGGTEGANSPVELTS 395
Query: 114 FNQDSPWAVYEVTCGSFHTALL 135
V +V+CG H+A +
Sbjct: 396 LR----GLVGDVSCGLVHSAAV 413
>gi|340505322|gb|EGR31664.1| hypothetical protein IMG5_104860 [Ichthyophthirius multifiliis]
Length = 1126
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 137/295 (46%), Gaps = 58/295 (19%)
Query: 3 QICSVKAGGMMSLAIDNAGALW--------MWGNCPLPDSSTEGGFSLVSSFTPSPVWDF 54
+I + G +L ID L+ + GN L D +L F
Sbjct: 22 EIIYIACGHHHTLIIDENNQLYSFGMGKTGLLGNEHLEDVKIPQQLNLKQKF-------- 73
Query: 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
V+VACG+ H +AL +G + +SWG N GQLG G++ L+PK +
Sbjct: 74 -----VQVACGATHSLALTISG--------IIFSWGKNLRGQLGHGNQNDCLKPKEVI-- 118
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
Q+ A Y + CG H+A ++ K +T+G G+ +LGHG T L+P++V
Sbjct: 119 -QNDIIAEY-IDCGDQHSAFVSKNKE--------LYTWGNGQYYRLGHGVTTDELIPKKV 168
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPIL 232
L Y Y+ V CG+ HT +V+ G V++W GM LG+ + D + L
Sbjct: 169 VVLEDY-YVTHVSCGMNHTLIVTGEGFVYAWGDGMYGKLGV----------SEDCKTQTL 217
Query: 233 ISGNGPHGPKFQDP---VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
+ G KF+ QVA G+ H++ ++ +G ++++WG +SG LG G D
Sbjct: 218 PTRVGMICKKFRKNKMYYQVAAGSMHSLALSTNG-QIFTWGSSKSGNLGIGYNKD 271
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 24/168 (14%)
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
+ CG HT ++ + ++FG+G+ G LG+ + +P+Q+ ++ V
Sbjct: 26 IACGHHHTLIIDENNQ--------LYSFGMGKTGLLGNEHLEDVKIPQQLNLKQKF---V 74
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
V CG H+ ++ +G ++SWG K L L D + P + N
Sbjct: 75 QVACGATHSLALTISGIIFSWG--KNL----RGQLGHGNQNDCLKPKEVIQNDIIAEY-- 126
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ CG H+ V+ + +L++WG G+ LG G T D P V+
Sbjct: 127 ----IDCGDQHSAFVSKNK-ELYTWGNGQYYRLGHGVTTDELIPKKVV 169
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 108/271 (39%), Gaps = 45/271 (16%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD-FHGHTVVKVACG 65
+ + ++AI G ++WG G+S ++ P + T++ AC
Sbjct: 433 ISCSYLHAIAISQKGQAYVWGKNIYYQLGV--GYSCNYNYIPQKLQGILETKTIIMSACS 490
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL--RPKIIETFNQDSPWAVY 123
+ L GE + ++G ++ G LG ++ + PK++ D P +Y
Sbjct: 491 DKFSALLTDKGEVW--------TFGTSDCGVLGHQEKNYYVVPEPKMVN----DIPQMIY 538
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALV------------- 170
+ CG ++ KR + +G GQLG ++ +
Sbjct: 539 -IACGPQGMVSISAHKRQ-------LYAWGNNIYGQLGIKIYRTEMNVNEYDEDKNGKQQ 590
Query: 171 -PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
EQ+K P+ V + SVD G+FH+ + + G ++S G+ G N + G
Sbjct: 591 NNEQIK--PEEVQIKSVDMGMFHSVAIDNNGKIYSCGLRIYSGQ-ANVFNVEDAKGIDDQ 647
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVT 260
ILI N +F +QV+C HT+ ++
Sbjct: 648 FILIRTNELQNQQF---IQVSCSEYHTLALS 675
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
++ + CG HT ++ ++S+GM K GL N L + I K
Sbjct: 23 IIYIACGHHHTLIIDENNQLYSFGMGKT-GLLGNEHL---------EDVKIPQQLNLKQK 72
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEF 300
F VQVACGA H++ +T G ++SWG+ G LG G D P V+ + E+
Sbjct: 73 F---VQVACGATHSLALTISGI-IFSWGKNLRGQLGHGNQNDCLKPKEVIQNDIIAEY 126
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 31/166 (18%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRL 106
P + F + + ++C H +A+ G+ Y WG N QLG+G
Sbjct: 419 PFQIQYFKNNIIRYISCSYLHAIAISQKGQA--------YVWGKNIYYQLGVGYSCNYNY 470
Query: 107 RPK----IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
P+ I+ET + C +ALLT + WTFG + G LGH
Sbjct: 471 IPQKLQGILET------KTIIMSACSDKFSALLTDKGE--------VWTFGTSDCGVLGH 516
Query: 163 GTTQSALVPE--QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+VPE V ++PQ +Y+ G+ S+ + +++WG
Sbjct: 517 QEKNYYVVPEPKMVNDIPQMIYIACGPQGM--VSISAHKRQLYAWG 560
>gi|225438373|ref|XP_002274569.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Vitis
vinifera]
gi|296082603|emb|CBI21608.3| unnamed protein product [Vitis vinifera]
Length = 445
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 121/251 (48%), Gaps = 36/251 (14%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
FTP P+ HG + ++ACG H +A+ GE SWG N NGQLGLG E
Sbjct: 110 FTPQPIKALHGLRIKQIACGDSHCLAVTMDGEVQ--------SWGRNQNGQLGLGTTEDS 161
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
L P+ I+ F S V V G+ HTA +T + + +G G G LG G
Sbjct: 162 LVPQKIQAFQGVS---VKMVAAGAEHTAAVTE--------DGELYGWGWGRYGNLGLGDR 210
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
LVPE+V + + V +V V CG HT VSS+G ++++G K L +
Sbjct: 211 NDRLVPEKVSTV-EGVKMVKVACGWRHTISVSSSGGLYTYGWSK------YGQLGHGDFE 263
Query: 226 DAISPILISGNGPHGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
D ++P + Q+ + +++ G HT+ +T DG KL+ WG + G +G G +
Sbjct: 264 DHLTPHKLE-------ALQENLISEISGGWRHTMALTSDG-KLYGWGWNKFGQVGVGDNV 315
Query: 284 DFFAPAIVLWP 294
D +P V +P
Sbjct: 316 DHCSPVQVKFP 326
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 133/294 (45%), Gaps = 45/294 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+I + G LA+ G + WG N L +TE S P + F G +V
Sbjct: 122 RIKQIACGDSHCLAVTMDGEVQSWGRNQNGQLGLGTTE------DSLVPQKIQAFQGVSV 175
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
VA G+EH A+ GE Y WG G LGLGDR RL P+ + T
Sbjct: 176 KMVAAGAEHTAAVTEDGE--------LYGWGWGRYGNLGLGDRNDRLVPEKVSTVEGVK- 226
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ +V CG HT ++ +T+G + GQLGHG + L P +++ L +
Sbjct: 227 --MVKVACGWRHTISVSS--------SGGLYTYGWSKYGQLGHGDFEDHLTPHKLEALQE 276
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNG 237
+ + + G HT ++S G ++ WG K +G+ N D SP+ +
Sbjct: 277 NL-ISEISGGWRHTMALTSDGKLYGWGWNKFGQVGVGDNV--------DHCSPVQVKF-- 325
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P Q V ++CG HT+ VT+ ++SWGRG +G LG G++ID P ++
Sbjct: 326 ---PHEQKVVHISCGWRHTLAVTER-QNVFSWGRGTNGQLGHGESIDRNIPKMI 375
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 109/235 (46%), Gaps = 35/235 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+ ++ G+ H VAL+S ++VC SWG +GQLG GD E RL P + +
Sbjct: 18 VLLISAGASHSVALLSG-------NVVC-SWGRGEDGQLGHGDAEDRLSPTYLSALDGHE 69
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V VTCG+ HT + + +++G G+ G+LGHG + P+ +K L
Sbjct: 70 ---VVSVTCGADHTTAYSESF-------TQVYSWGWGDFGRLGHGNSSDLFTPQPIKAL- 118
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ + + CG H V+ G+V SWG + N L D++ P I
Sbjct: 119 HGLRIKQIACGDSHCLAVTMDGEVQSWGRNQ------NGQLGLGTTEDSLVPQKIQ---- 168
Query: 239 HGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
FQ VA GA HT VT+DG +L+ WG GR G LG G D P V
Sbjct: 169 ---AFQGVSVKMVAAGAEHTAAVTEDG-ELYGWGWGRYGNLGLGDRNDRLVPEKV 219
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 130/290 (44%), Gaps = 38/290 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ ++ + AG S+A+ + + WG + G +P+ + GH VV
Sbjct: 15 VRRVLLISAGASHSVALLSGNVVCSWGR---GEDGQLGHGDAEDRLSPTYLSALDGHEVV 71
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V CG++H A Y YSWG + G+LG G+ P+ I+ +
Sbjct: 72 SVTCGADHTTA-------YSESFTQVYSWGWGDFGRLGHGNSSDLFTPQPIKALH---GL 121
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ ++ CG H +T ++ ++G +NGQLG GTT+ +LVP++++ Q
Sbjct: 122 RIKQIACGDSHCLAVT--------MDGEVQSWGRNQNGQLGLGTTEDSLVPQKIQAF-QG 172
Query: 181 VYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
V + V G HT+ V+ G++ W WG LGL + D + P +S
Sbjct: 173 VSVKMVAAGAEHTAAVTEDGELYGWGWGRYGNLGL--------GDRNDRLVPEKVS--TV 222
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
G K V+VACG HT+ V+ G L+++G + G LG G D P
Sbjct: 223 EGVKM---VKVACGWRHTISVSSSG-GLYTYGWSKYGQLGHGDFEDHLTP 268
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 22/175 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G ++++ ++G L+ +G G TP + + + ++
Sbjct: 226 KMVKVACGWRHTISVSSSGGLYTYG---WSKYGQLGHGDFEDHLTPHKLEALQENLISEI 282
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL S G+ Y WG N GQ+G+GD P ++ ++ V
Sbjct: 283 SGGWRHTMALTSDGK--------LYGWGWNKFGQVGVGDNVDHCSPVQVKFPHEQK---V 331
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
++CG HT +T R+ +++G G NGQLGHG + +P+ ++ L
Sbjct: 332 VHISCGWRHTLAVTERQN--------VFSWGRGTNGQLGHGESIDRNIPKMIEVL 378
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G ++A+ + G L+ WG G V +P V H VV ++
Sbjct: 279 ISEISGGWRHTMALTSDGKLYGWGWNKF---GQVGVGDNVDHCSPVQVKFPHEQKVVHIS 335
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
CG H +A+ E +SWG NGQLG G+ R PK+IE + D
Sbjct: 336 CGWRHTLAVT--------ERQNVFSWGRGTNGQLGHGESIDRNIPKMIEVLSAD 381
>gi|242073146|ref|XP_002446509.1| hypothetical protein SORBIDRAFT_06g017130 [Sorghum bicolor]
gi|241937692|gb|EES10837.1| hypothetical protein SORBIDRAFT_06g017130 [Sorghum bicolor]
Length = 443
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 132/292 (45%), Gaps = 41/292 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+I + G LA+ AG + WG N L +TE S P + F G V
Sbjct: 120 KIKQIACGDSHCLAVTMAGQVQSWGRNQNGQLGLGTTE------DSLLPQKIQAFEGVCV 173
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+A G+EH A+ ED Y WG G LGLGDR RL P+ + + +
Sbjct: 174 KMIAAGAEHTAAVT--------EDGDLYGWGWGRYGNLGLGDRNDRLLPEKVSSVEGEK- 224
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V CG HT ++ +T+G + GQLGHG + LVP +++ L
Sbjct: 225 --MVLVACGWRHTITVSDSGN--------LYTYGWSKYGQLGHGDFEDHLVPHKLEALKD 274
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ + G HT ++S G ++ WG K + N+ D SP+ + H
Sbjct: 275 ST-ISQISGGWRHTMALTSEGKLYGWGWNK----FGQVGVGNND--DHCSPVQV-----H 322
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P+ Q QVACG HT+ +++ ++SWGRG SG LG G+ +D P ++
Sbjct: 323 FPEDQKISQVACGWRHTLALSEK-KNVFSWGRGTSGQLGNGEIVDRNTPVLI 373
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 113/237 (47%), Gaps = 35/237 (14%)
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
TVV V+ G+ H VAL++ +++C SWG +GQLG GD E RL P ++ F
Sbjct: 14 QTVVLVSAGASHSVALLTG-------NVLC-SWGRGEDGQLGHGDAEDRLVPTVLSGF-- 63
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
D+P + V CG+ HT + D L+ W G G+ G+LGHG + P+ VK
Sbjct: 64 DAP-GITSVICGADHTTAYSE-----DELQVYSW--GWGDFGRLGHGNSSDVFTPQPVKA 115
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L Q + + + CG H V+ AG V SWG + N L D++ P I
Sbjct: 116 L-QGLKIKQIACGDSHCLAVTMAGQVQSWGRNQ------NGQLGLGTTEDSLLPQKIQ-- 166
Query: 237 GPHGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ +A GA HT VT+DG L+ WG GR G LG G D P V
Sbjct: 167 -----AFEGVCVKMIAAGAEHTAAVTEDG-DLYGWGWGRYGNLGLGDRNDRLLPEKV 217
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
PQ V LVS G H+ + + + SWG + + L +A D + P ++SG
Sbjct: 13 PQTVVLVSA--GASHSVALLTGNVLCSWGRGE------DGQLGHGDAEDRLVPTVLSG-- 62
Query: 238 PHGPKFQDP--VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F P V CGA HT ++D +++SWG G G LG G + D F P V
Sbjct: 63 -----FDAPGITSVICGADHTTAYSEDELQVYSWGWGDFGRLGHGNSSDVFTPQPV 113
>gi|383280368|pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
gi|383280369|pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 143/338 (42%), Gaps = 80/338 (23%)
Query: 3 QICSVKAGGMMSLAIDNAGA---LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
QI SV G ++A +G W WG D G + FTP P+ HG +
Sbjct: 69 QIVSVTCGADHTVAYSQSGMEVYSWGWG-----DFGRLGHGNSSDLFTPLPIKALHGIRI 123
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++ACG H +A+ GE SWG N NGQLGLGD E L P+ I+ F
Sbjct: 124 KQIACGDSHCLAVTMEGEVQ--------SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR- 174
Query: 120 WAVYEVTCGSFHTALLTH----------------------RKRPNDMLES---------- 147
+ V G+ HTA +T R P + +
Sbjct: 175 --IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC 232
Query: 148 ------------MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
+T+G + GQLGHG + L+P +++ L ++ + G HT
Sbjct: 233 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNS-FISQISGGWRHTMA 291
Query: 196 VSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++S G ++ WG K +G+ N D SP+ + P Q VQV+CG
Sbjct: 292 LTSDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV-----RFPDDQKVVQVSCGW 338
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ VT+ +++WGRG +G LG G+++D P I+
Sbjct: 339 RHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 375
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 35/244 (14%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
+P+ + GH +V V CG++H VA +G + YSWG + G+LG G+
Sbjct: 58 SPTQLSALDGHQIVSVTCGADHTVAYSQSG-------MEVYSWGWGDFGRLGHGNSSDLF 110
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P I+ + + ++ CG H +T +E ++G +NGQLG G T+
Sbjct: 111 TPLPIKALHGIR---IKQIACGDSHCLAVT--------MEGEVQSWGRNQNGQLGLGDTE 159
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEA 224
+LVP++++ + + + V G HT+ V+ GD+ W WG LGL +
Sbjct: 160 DSLVPQKIQAF-EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL--------GDR 210
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
D + P ++ G G K VACG HT+ V+ G L+++G + G LG G D
Sbjct: 211 TDRLVPERVTSTG--GEKMS---MVACGWRHTISVSYSG-ALYTYGWSKYGQLGHGDLED 264
Query: 285 FFAP 288
P
Sbjct: 265 HLIP 268
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 169 LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
+ ++V P+ V ++S G H+ + S V SWG + + L +A D
Sbjct: 6 MAADEVTAPPRKVLIIS--AGASHSVALLSGDIVCSWGRGE------DGQLGHGDAEDRP 57
Query: 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
SP +S H V V CGA HTV + G +++SWG G G LG G + D F P
Sbjct: 58 SPTQLSALDGH-----QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTP 112
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 22/175 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G ++++ +GAL+ +G G L P + + ++
Sbjct: 226 KMSMVACGWRHTISVSYSGALYTYG---WSKYGQLGHGDLEDHLIPHKLEALSNSFISQI 282
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL S G+ Y WG N GQ+G+G+ + P + F D V
Sbjct: 283 SGGWRHTMALTSDGK--------LYGWGWNKFGQVGVGNNLDQCSPVQVR-FPDDQK--V 331
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+V+CG HT +T R + +G G NGQLG G + P+ ++ L
Sbjct: 332 VQVSCGWRHTLAVTERNN--------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 378
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S I + G ++A+ + G L+ WG S P V VV+
Sbjct: 277 SFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS---PVQVRFPDDQKVVQ 333
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+CG H +A+ E ++WG NGQLG+G+ R PKIIE + D
Sbjct: 334 VSCGWRHTLAVT--------ERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVD 381
>gi|147782117|emb|CAN67581.1| hypothetical protein VITISV_010346 [Vitis vinifera]
Length = 423
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 121/251 (48%), Gaps = 36/251 (14%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
FTP P+ HG + ++ACG H +A+ GE SWG N NGQLGLG E
Sbjct: 98 FTPQPIKALHGLRIKQIACGDSHCLAVTMDGEVQ--------SWGRNQNGQLGLGTTEDS 149
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
L P+ I+ F S V V G+ HTA +T + + +G G G LG G
Sbjct: 150 LVPQKIQAFQGVS---VKMVAAGAEHTAAVTE--------DGELYGWGWGRYGNLGLGDR 198
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
LVPE+V + + V +V V CG HT VSS+G ++++G K L +
Sbjct: 199 NDRLVPEKVSTV-EGVKMVKVACGWRHTISVSSSGGLYTYGWSK------YGQLGHGDFE 251
Query: 226 DAISPILISGNGPHGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
D ++P + Q+ + +++ G HT+ +T DG KL+ WG + G +G G +
Sbjct: 252 DHLTPHKLE-------ALQENLISEISGGWRHTMALTSDG-KLYGWGWNKFGQVGVGDNV 303
Query: 284 DFFAPAIVLWP 294
D +P V +P
Sbjct: 304 DHCSPVQVKFP 314
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 132/294 (44%), Gaps = 45/294 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+I + G LA+ G + WG N L +TE S P + F G +V
Sbjct: 110 RIKQIACGDSHCLAVTMDGEVQSWGRNQNGQLGLGTTE------DSLVPQKIQAFQGVSV 163
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
VA G+EH A+ GE Y WG G LGLGDR RL P+ + T
Sbjct: 164 KMVAAGAEHTAAVTEDGE--------LYGWGWGRYGNLGLGDRNDRLVPEKVSTVEGVK- 214
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ +V CG HT ++ +T+G + GQLGHG + L P +++ L Q
Sbjct: 215 --MVKVACGWRHTISVSS--------SGGLYTYGWSKYGQLGHGDFEDHLTPHKLEAL-Q 263
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNG 237
+ + G HT ++S G ++ WG K +G+ N D SP+ +
Sbjct: 264 ENLISEISGGWRHTMALTSDGKLYGWGWNKFGQVGVGDNV--------DHCSPVQVKF-- 313
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P Q V ++CG HT+ VT+ ++SWGRG +G LG G++ID P ++
Sbjct: 314 ---PHEQKVVHISCGWRHTLAVTER-QNVFSWGRGTNGQLGHGESIDRNIPKMI 363
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 118/265 (44%), Gaps = 61/265 (23%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+ ++ G+ H VAL+ ++VC SWG +GQLG GD E RL P + +
Sbjct: 18 VLLISAGASHSVALLXG-------NVVC-SWGRGEDGQLGHGDAEDRLSPTYLSALDGHE 69
Query: 119 PWAVYEVTCGSFHT------------------------ALLTHRKRPNDMLESMCW---- 150
V VTCG+ HT AL R + +S C
Sbjct: 70 ---VVSVTCGADHTTAYSESFTQVYSWGCDLFTPQPIKALHGLRIKQIACGDSHCLAVTM 126
Query: 151 -----TFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV--W 203
++G +NGQLG GTT+ +LVP++++ Q V + V G HT+ V+ G++ W
Sbjct: 127 DGEVQSWGRNQNGQLGLGTTEDSLVPQKIQAF-QGVSVKMVAAGAEHTAAVTEDGELYGW 185
Query: 204 SWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
WG LGL + D + P +S G K V+VACG HT+ V+ G
Sbjct: 186 GWGRYGNLGL--------GDRNDRLVPEKVS--TVEGVKM---VKVACGWRHTISVSSSG 232
Query: 264 YKLWSWGRGRSGVLGTGKTIDFFAP 288
L+++G + G LG G D P
Sbjct: 233 -GLYTYGWSKYGQLGHGDFEDHLTP 256
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 22/175 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G ++++ ++G L+ +G G TP + + + ++
Sbjct: 214 KMVKVACGWRHTISVSSSGGLYTYG---WSKYGQLGHGDFEDHLTPHKLEALQENLISEI 270
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL S G+ Y WG N GQ+G+GD P ++ ++ V
Sbjct: 271 SGGWRHTMALTSDGK--------LYGWGWNKFGQVGVGDNVDHCSPVQVKFPHEQK---V 319
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
++CG HT +T R+ +++G G NGQLGHG + +P+ ++ L
Sbjct: 320 VHISCGWRHTLAVTERQN--------VFSWGRGTNGQLGHGESIDRNIPKMIEVL 366
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G ++A+ + G L+ WG G V +P V H VV ++
Sbjct: 267 ISEISGGWRHTMALTSDGKLYGWGWNKF---GQVGVGDNVDHCSPVQVKFPHEQKVVHIS 323
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
CG H +A+ E +SWG NGQLG G+ R PK+IE + D
Sbjct: 324 CGWRHTLAVT--------ERQNVFSWGRGTNGQLGHGESIDRNIPKMIEVLSAD 369
>gi|379318635|pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
gi|379318636|pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 141/338 (41%), Gaps = 80/338 (23%)
Query: 3 QICSVKAGGMMSLAIDNAGA---LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
QI SV G ++A +G W WG D G + FTP P+ HG +
Sbjct: 57 QIVSVTCGADHTVAYSQSGMEVYSWGWG-----DFGRLGHGNSSDLFTPLPIKALHGIRI 111
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++ACG H +A+ GE SWG N NGQLGLGD E L P+ I+ F
Sbjct: 112 KQIACGDSHCLAVTMEGEVQ--------SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR- 162
Query: 120 WAVYEVTCGSFHTALLTH------------------------------------------ 137
+ V G+ HTA +T
Sbjct: 163 --IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC 220
Query: 138 --RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
R + +T+G + GQLGHG + L+P +++ L ++ + G HT
Sbjct: 221 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSN-SFISQISGGWRHTMA 279
Query: 196 VSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++S G ++ WG K +G+ N D SP+ + P Q VQV+CG
Sbjct: 280 LTSDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV-----RFPDDQKVVQVSCGW 326
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ VT+ +++WGRG +G LG G+++D P I+
Sbjct: 327 RHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 363
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 35/244 (14%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
+P+ + GH +V V CG++H VA +G + YSWG + G+LG G+
Sbjct: 46 SPTQLSALDGHQIVSVTCGADHTVAYSQSG-------MEVYSWGWGDFGRLGHGNSSDLF 98
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P I+ + + ++ CG H +T +E ++G +NGQLG G T+
Sbjct: 99 TPLPIKALHGIR---IKQIACGDSHCLAVT--------MEGEVQSWGRNQNGQLGLGDTE 147
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEA 224
+LVP++++ + + + V G HT+ V+ GD+ W WG LGL +
Sbjct: 148 DSLVPQKIQAF-EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL--------GDR 198
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
D + P ++ G G K VACG HT+ V+ G L+++G + G LG G D
Sbjct: 199 TDRLVPERVTSTG--GEKMS---MVACGWRHTISVSYSG-ALYTYGWSKYGQLGHGDLED 252
Query: 285 FFAP 288
P
Sbjct: 253 HLIP 256
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P+ V ++S G H+ + S V SWG + + L +A D SP +S
Sbjct: 3 PRKVLIISA--GASHSVALLSGDIVCSWGRGE------DGQLGHGDAEDRPSPTQLSALD 54
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
H V V CGA HTV + G +++SWG G G LG G + D F P
Sbjct: 55 GH-----QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTP 100
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 22/175 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G ++++ +GAL+ +G G L P + + ++
Sbjct: 214 KMSMVACGWRHTISVSYSGALYTYG---WSKYGQLGHGDLEDHLIPHKLEALSNSFISQI 270
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL S G+ Y WG N GQ+G+G+ + P + F D V
Sbjct: 271 SGGWRHTMALTSDGK--------LYGWGWNKFGQVGVGNNLDQCSPVQVR-FPDDQK--V 319
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+V+CG HT +T R + +G G NGQLG G + P+ ++ L
Sbjct: 320 VQVSCGWRHTLAVTERNN--------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S I + G ++A+ + G L+ WG S P V VV+
Sbjct: 265 SFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS---PVQVRFPDDQKVVQ 321
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+CG H +A+ E ++WG NGQLG+G+ R PKIIE + D
Sbjct: 322 VSCGWRHTLAVT--------ERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVD 369
>gi|449673459|ref|XP_002164132.2| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Hydra
magnipapillata]
Length = 2284
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 137/283 (48%), Gaps = 45/283 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
SV +GG +A+ + G + WG+ ++ G +L+S P + F G V ++CG
Sbjct: 650 SVHSGGNHVMALTSDGLAFSWGD---GENGQLGHGNLMSCSKPHLIEAFVGKIVTDISCG 706
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+V E+ Y+WG + G+LG GD E+ L+PK + F + V +V
Sbjct: 707 SAHSAAIV--------ENKYLYTWGLGDFGRLGHGDEETILQPKFVTHF---LGYNVVQV 755
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
+CGS T +T + W++G G+ G+LG G ++ L+P +V++L + + +
Sbjct: 756 SCGSRDAQTVCITDDDK--------VWSWGDGDFGKLGRGGSERCLIPVEVEQL-RGLQI 806
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI---SPILISG-NGPH 239
+ CG T ++ G VW+WG R G I P L+ G G H
Sbjct: 807 CKILCGAQFTVALTKTGTVWTWG---------KGDFYRLGHGTDIHVRQPKLVEGLRGKH 857
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+ +A GA H + VT DG +++SWG G LGTG+T
Sbjct: 858 ------VIDIAVGALHCLAVTQDG-EVFSWGDNDHGQLGTGET 893
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 129/294 (43%), Gaps = 43/294 (14%)
Query: 5 CSVKAGGMMS-LAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSP--VWDFHGHTVVK 61
C AGG S I N G L+ G S + G ++ SP V + V K
Sbjct: 593 CKFIAGGSKSTFFITNKGKLYSCGE----SSFGKLGIGDITGNVTSPRLVTGLNQLIVTK 648
Query: 62 VAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V+ G HV+AL S G + +SWG NGQLG G+ S +P +IE F
Sbjct: 649 VSVHSGGNHVMALTSDG--------LAFSWGDGENGQLGHGNLMSCSKPHLIEAFVGK-- 698
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +++CGS H+A + K +T+GLG+ G+LGHG ++ L P+ V
Sbjct: 699 -IVTDISCGSAHSAAIVENK--------YLYTWGLGDFGRLGHGDEETILQPKFVTHFLG 749
Query: 180 YVYLVSVDCGLFHTSVVSSAGD--VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
Y +V V CG V D VWSWG + G L R + + P+ +
Sbjct: 750 Y-NVVQVSCGSRDAQTVCITDDDKVWSWG-DGDFG-----KLGRGGSERCLIPVEV---- 798
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ ++ CGA TV +T G +W+WG+G LG G I P +V
Sbjct: 799 -EQLRGLQICKILCGAQFTVALTKTG-TVWTWGKGDFYRLGHGTDIHVRQPKLV 850
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 125/286 (43%), Gaps = 35/286 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
SV +GG LA+ + G ++ WG + G + +S P + F G + + G
Sbjct: 1533 SVHSGGRHCLALSSDGEVFSWGE---GEDGKLGHGNRQTSSQPKRIEFFCGKIITNICAG 1589
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H A+ GE Y +WG G+LG GD + +L+PK +E + V +V
Sbjct: 1590 GSHSAAIGLNGELY--------TWGKGRYGRLGHGDSDDQLKPKQVEALQF---FFVLDV 1638
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + VP +++L +V
Sbjct: 1639 ACGSGDAQTLCITNDDN------VWSWGDGDYGKLGRGGSDGCKVPMIIEDLSGK-GIVK 1691
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
V+CG + ++ G +++WG KG L P++++ F
Sbjct: 1692 VECGSQFSMALTKYGVLYTWG--KG----DYYRLGHGTEEHVRRPMMVTA------LFNK 1739
Query: 246 PV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
V ++CG+ H V+ TD+G +++ WG G LG G I P +
Sbjct: 1740 IVTSISCGSLHCVVCTDEG-EVYCWGDNDEGQLGDGTIIARQTPTL 1784
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 111/237 (46%), Gaps = 40/237 (16%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ V G H +AL S GE + SWG +G+LG G+R++ +PK IE F
Sbjct: 1532 ISVHSGGRHCLALSSDGEVF--------SWGEGEDGKLGHGNRQTSSQPKRIEFFCGK-- 1581
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ + G H+A + L +T+G G G+LGHG + L P+QV+ L Q
Sbjct: 1582 -IITNICAGGSHSAAIG--------LNGELYTWGKGRYGRLGHGDSDDQLKPKQVEAL-Q 1631
Query: 180 YVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI---S 234
+ +++ V CG T +++ +VWSWG + G L R + P++I S
Sbjct: 1632 FFFVLDVACGSGDAQTLCITNDDNVWSWG-DGDYG-----KLGRGGSDGCKVPMIIEDLS 1685
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G G V+V CG+ ++ +T G L++WG+G LG G P +V
Sbjct: 1686 GKG--------IVKVECGSQFSMALTKYGV-LYTWGKGDYYRLGHGTEEHVRRPMMV 1733
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 107/227 (47%), Gaps = 24/227 (10%)
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
EH V + + + ++ G NNGQLGLG E+ P+++E+ + + V
Sbjct: 1477 EHNVKIDCDTVCITTDGALVFATGYGNNGQLGLGYSETVTSPRLLESIKHINIKKI-SVH 1535
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSV 186
G H L+ + +++G GE+G+LGHG Q++ P++++ + + ++
Sbjct: 1536 SGGRHCLALSS--------DGEVFSWGEGEDGKLGHGNRQTSSQPKRIEFFCGKI-ITNI 1586
Query: 187 DCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 246
G H++ + G++++WG + L ++ D + P + +F
Sbjct: 1587 CAGGSHSAAIGLNGELYTWGKGR------YGRLGHGDSDDQLKPKQV-----EALQFFFV 1635
Query: 247 VQVACGA--AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ VACG+ A T+ +T+D +WSWG G G LG G + P I+
Sbjct: 1636 LDVACGSGDAQTLCITNDD-NVWSWGDGDYGKLGRGGSDGCKVPMII 1681
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 80/189 (42%), Gaps = 31/189 (16%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +L I N +W WG+ D G P + D G +VKV CGS+
Sbjct: 1642 SGDAQTLCITNDDNVWSWGD---GDYGKLGRGGSDGCKVPMIIEDLSGKGIVKVECGSQF 1698
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET-FNQDSPWAVYEVTC 127
+AL G V Y+WG + +LG G E RP ++ FN+ V ++C
Sbjct: 1699 SMALTKYG--------VLYTWGKGDYYRLGHGTEEHVRRPMMVTALFNK----IVTSISC 1746
Query: 128 GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVD 187
GS H + T D E CW G + GQLG GT ++ Q L ++ +D
Sbjct: 1747 GSLHCVVCT------DEGEVYCW--GDNDEGQLGDGT----IIARQTPTLNTFLLNKKID 1794
Query: 188 ---CGLFHT 193
CG HT
Sbjct: 1795 RISCGSAHT 1803
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QIC + G ++A+ G +W WG D G + + P V G V+ +
Sbjct: 805 QICKILCGAQFTVALTKTGTVWTWGK---GDFYRLGHGTDIHVRQPKLVEGLRGKHVIDI 861
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G+ H +A+ GE + SWG N++GQLG G+ + + P +I + +
Sbjct: 862 AVGALHCLAVTQDGEVF--------SWGDNDHGQLGTGETDVKKVPNLITGLHNHR---I 910
Query: 123 YEVTCGSFHT 132
V CGS H+
Sbjct: 911 KYVACGSSHS 920
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 27/190 (14%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
++ I + +W WG+ D G P V G + K+ CG++ VAL
Sbjct: 764 TVCITDDDKVWSWGD---GDFGKLGRGGSERCLIPVEVEQLRGLQICKILCGAQFTVALT 820
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
G + +WG + +LG G +PK++E V ++ G+ H
Sbjct: 821 KTGTVW--------TWGKGDFYRLGHGTDIHVRQPKLVEGLRGKH---VIDIAVGALHCL 869
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFH- 192
+T + +++G ++GQLG G T VP + L + + V CG H
Sbjct: 870 AVTQ--------DGEVFSWGDNDHGQLGTGETDVKKVPNLITGLHNH-RIKYVACGSSHS 920
Query: 193 ---TSVVSSA 199
T + +SA
Sbjct: 921 IAWTEITTSA 930
>gi|449522147|ref|XP_004168089.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like, partial
[Cucumis sativus]
Length = 302
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 120/250 (48%), Gaps = 38/250 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES 104
S P + F G ++ VA G+EH A+ GE + WG G LGLGDR
Sbjct: 17 SLVPQKIQAFEGISIKMVAAGAEHTAAVTEDGE--------LFGWGWGRYGNLGLGDRND 68
Query: 105 RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
RL P+ + + + D + V CG HT ++ +T+G + GQLGHG
Sbjct: 69 RLVPQKVSSVDGDK---MVMVACGWRHTISVSSL--------GGLYTYGWSKYGQLGHGD 117
Query: 165 TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA 224
+ LVP +++ L + + + G HT +++ G ++ WG K + A
Sbjct: 118 FEDRLVPHRLEAL-RGDNISQISGGWRHTMALTTDGKLYGWGWNK---------FGQVGA 167
Query: 225 GDAI---SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
GD I SPI I P+ Q +Q++CG HT+ VTD ++SWGRG +G LG G+
Sbjct: 168 GDNIDHCSPIQIK-----FPQDQKVIQISCGWRHTLAVTDK-QNVFSWGRGTNGQLGHGE 221
Query: 282 TIDFFAPAIV 291
++D P I+
Sbjct: 222 SVDRNTPMIL 231
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G ++A+ G L+ WG G + +P + V++++
Sbjct: 135 ISQISGGWRHTMALTTDGKLYGWGWNKF---GQVGAGDNIDHCSPIQIKFPQDQKVIQIS 191
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
CG H +A+ + +SWG NGQLG G+ R P I+E + D
Sbjct: 192 CGWRHTLAVT--------DKQNVFSWGRGTNGQLGHGESVDRNTPMILEALSVD 237
>gi|221482889|gb|EEE21220.1| regulator of chromosome condensation RCC1 domain-containing protein
[Toxoplasma gondii GT1]
Length = 1020
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 138/303 (45%), Gaps = 68/303 (22%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL---VSSFTPSPVWDFHGHTVVKVA 63
V AGGM + ++G L+MWG +++EG + P V HG V VA
Sbjct: 138 VSAGGMQMAVVAHSGELYMWG------ANSEGQLGTGDRRDASVPRLVKALHGKVVKAVA 191
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL------------------GDRESR 105
C EH V + +D Y+WG NG+LGL G R
Sbjct: 192 CSQEHTVCCL--------DDGSAYAWGCALNGRLGLHGLSIPSSAGLGVFSPATGARPEP 243
Query: 106 L-------RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENG 158
L P+++E+ + + +V CG +H+A L ++ L +T GLG NG
Sbjct: 244 LASACAVCTPRVLESLCG---YFIADVACGPYHSAFLGIYEQDRTSL----FTCGLGLNG 296
Query: 159 QLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLC 214
+LGHG + +P V L + V + ++ CG HT+ V+SAG +++WG GLG
Sbjct: 297 RLGHGDEEDRHLPTAVHAL-ENVNITAIACGAHHTACVTSAGTLYTWGGAAFGKLGLG-- 353
Query: 215 PNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRS 274
+ G + P +SG + + V VA G+ H+ VT DG +L++WG+GR
Sbjct: 354 -------STRGSQLLPKHVSGP----LRNKAVVSVALGSQHSACVTTDG-ELYTWGQGRR 401
Query: 275 GVL 277
G L
Sbjct: 402 GNL 404
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 96/247 (38%), Gaps = 53/247 (21%)
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+V+ G + + +GE Y WGAN+ GQLG GDR P++++ +
Sbjct: 137 RVSAGGMQMAVVAHSGELYM--------WGANSEGQLGTGDRRDASVPRLVKALHGK--- 185
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-HG---------------- 163
V V C HT + + + +G NG+LG HG
Sbjct: 186 VVKAVACSQEHTVCC--------LDDGSAYAWGCALNGRLGLHGLSIPSSAGLGVFSPAT 237
Query: 164 --------TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCP 215
+ + P ++ L Y ++ V CG +H++ + + GLGL
Sbjct: 238 GARPEPLASACAVCTPRVLESLCGY-FIADVACGPYHSAFLGIYEQDRTSLFTCGLGL-- 294
Query: 216 NASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSG 275
N L + D P + H + + +ACGA HT VT G L++WG G
Sbjct: 295 NGRLGHGDEEDRHLPTAV-----HALENVNITAIACGAHHTACVTSAG-TLYTWGGAAFG 348
Query: 276 VLGTGKT 282
LG G T
Sbjct: 349 KLGLGST 355
>gi|237840751|ref|XP_002369673.1| regulator of chromosome condensation RCC1 domain-containing protein
[Toxoplasma gondii ME49]
gi|211967337|gb|EEB02533.1| regulator of chromosome condensation RCC1 domain-containing protein
[Toxoplasma gondii ME49]
gi|221503319|gb|EEE29017.1| regulator of chromosome condensation RCC1 domain-containing protein
[Toxoplasma gondii VEG]
Length = 1015
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 138/303 (45%), Gaps = 68/303 (22%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL---VSSFTPSPVWDFHGHTVVKVA 63
V AGGM + ++G L+MWG +++EG + P V HG V VA
Sbjct: 138 VSAGGMQMAVVAHSGELYMWG------ANSEGQLGTGDRRDASVPRLVKALHGKVVKAVA 191
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL------------------GDRESR 105
C EH V + +D Y+WG NG+LGL G R
Sbjct: 192 CSQEHTVCCL--------DDGSAYAWGCALNGRLGLHGLSIPSSAGLGVFSPATGARPEP 243
Query: 106 L-------RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENG 158
L P+++E+ + + +V CG +H+A L ++ L +T GLG NG
Sbjct: 244 LASACAVCTPRVLESLCG---YFIADVACGPYHSAFLGIYEQDRTSL----FTCGLGLNG 296
Query: 159 QLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLC 214
+LGHG + +P V L + V + ++ CG HT+ V+SAG +++WG GLG
Sbjct: 297 RLGHGDEEDRHLPTAVHAL-ENVNITAIACGAHHTACVTSAGTLYTWGGAAFGKLGLG-- 353
Query: 215 PNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRS 274
+ G + P +SG + + V VA G+ H+ VT DG +L++WG+GR
Sbjct: 354 -------STRGSQLLPKHVSGP----LRNKAVVSVALGSQHSACVTTDG-ELYTWGQGRR 401
Query: 275 GVL 277
G L
Sbjct: 402 GNL 404
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 96/247 (38%), Gaps = 53/247 (21%)
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+V+ G + + +GE Y WGAN+ GQLG GDR P++++ +
Sbjct: 137 RVSAGGMQMAVVAHSGELYM--------WGANSEGQLGTGDRRDASVPRLVKALHGK--- 185
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-HG---------------- 163
V V C HT + + + +G NG+LG HG
Sbjct: 186 VVKAVACSQEHTVCC--------LDDGSAYAWGCALNGRLGLHGLSIPSSAGLGVFSPAT 237
Query: 164 --------TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCP 215
+ + P ++ L Y ++ V CG +H++ + + GLGL
Sbjct: 238 GARPEPLASACAVCTPRVLESLCGY-FIADVACGPYHSAFLGIYEQDRTSLFTCGLGL-- 294
Query: 216 NASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSG 275
N L + D P + H + + +ACGA HT VT G L++WG G
Sbjct: 295 NGRLGHGDEEDRHLPTAV-----HALENVNITAIACGAHHTACVTSAG-TLYTWGGAAFG 348
Query: 276 VLGTGKT 282
LG G T
Sbjct: 349 KLGLGST 355
>gi|219847608|ref|YP_002462041.1| chromosome condensation regulator RCC1 [Chloroflexus aggregans DSM
9485]
gi|219541867|gb|ACL23605.1| regulator of chromosome condensation RCC1 [Chloroflexus aggregans
DSM 9485]
Length = 778
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 123/291 (42%), Gaps = 41/291 (14%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S + ++ AGG+ + A+ ++G +W WG DS G S S TP V V
Sbjct: 258 SGMTAIAAGGLHTCALMSSGGVWCWGR---NDSGQLGDGSDTDSSTPVAVSGLP-SGVTA 313
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+A G H AL +GE + WG N GQLG G +R P + P
Sbjct: 314 IAAGDYHTCALTGSGEVW--------CWGGNGFGQLGDGTTTARSTPAAVSGL----PSG 361
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V + G +HT L M W +G +GQLG GTT + P V LP V
Sbjct: 362 VETIAAGDYHTCAL--------MSSGGVWCWGRNNSGQLGDGTTTARSTPAAVSGLPSGV 413
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++ G HT + S+G VW WG+ + L D+ +P+ +SG
Sbjct: 414 TAIAA--GGLHTCALMSSGGVWCWGLNN------SGQLGDGSDTDSSTPVAVSG------ 459
Query: 242 KFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V+ +A G HT +T G +W WGR SG LG G TI P V
Sbjct: 460 -LASGVETIAAGGWHTCALTSSG-GVWCWGRNNSGQLGDGSTIYHITPVAV 508
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 120/290 (41%), Gaps = 39/290 (13%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S + ++ AGG + A+ ++G +W WG +S G S + TP V V
Sbjct: 462 SGVETIAAGGWHTCALTSSGGVWCWGR---NNSGQLGDGSTIYHITPVAVSGLP-SGVTA 517
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+A G H AL +G + WG N +GQLG G R P +
Sbjct: 518 IAAGDYHTCALTGSGGVW--------CWGYNLSGQLGDGTTTDRSTPVAVSGLTS----G 565
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V + G FHT LT W +G +GQLG GTT + P V LP V
Sbjct: 566 VTVIAAGRFHTCALTSSGG--------VWCWGANFDGQLGDGTTTNRTTPVAVSGLPSGV 617
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++ G +HT ++S+G+VW WG + G + + T A+S + P G
Sbjct: 618 TAIAA--GGWHTCALTSSGEVWCWG-DNYYGQLGDGTTTNRSTPGAVSGL------PSGV 668
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A G HT +T G ++W WG G LG G T + P V
Sbjct: 669 T-----AIAAGWEHTCALTSSG-EVWCWGDNYYGQLGDGTTTNRSTPGAV 712
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 123/295 (41%), Gaps = 48/295 (16%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVS-SFTPSPVWDFHGH 57
S + ++ AGG + A+ ++G + WG+ L D +T + V+ S PS
Sbjct: 155 SGVTAIAAGGDHTCALMSSGGVMCWGDNYYGQLGDGTTTNRRTPVAVSGLPSG------- 207
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE-SRLRPKIIETFNQ 116
V +A G H AL +GE + WG N GQLG G SR P +
Sbjct: 208 -VTAIAAGGLHTCALTGSGEV--------WCWGYNYYGQLGDGTTTYSRSTPAAVGGL-- 256
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
P + + G HT L M W +G ++GQLG G+ + P V
Sbjct: 257 --PSGMTAIAAGGLHTCAL--------MSSGGVWCWGRNDSGQLGDGSDTDSSTPVAVSG 306
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
LP V ++ G +HT ++ +G+VW WG G G + + T A+S +
Sbjct: 307 LPSGVTAIAA--GDYHTCALTGSGEVWCWG-GNGFGQLGDGTTTARSTPAAVSGL----- 358
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P G + +A G HT + G +W WGR SG LG G T PA V
Sbjct: 359 -PSGVE-----TIAAGDYHTCALMSSG-GVWCWGRNNSGQLGDGTTTARSTPAAV 406
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 117/293 (39%), Gaps = 42/293 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + ++ AGG + A+ +G + WG D G + + TP V V
Sbjct: 52 LQGVTAIAAGGAHTCALTGSGGVMCWGG---NDFGQLGDGTPTTRSTPGAVSGLP-SGVT 107
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G+ H AL +G + C WGAN +GQLG G R P + P
Sbjct: 108 AIAAGNYHTCALTGSG------GVRC--WGANYSGQLGNGLTFGRSTPGAVSGL----PS 155
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKELP 178
V + G HT L MCW G+N GQLG GTT + P V LP
Sbjct: 156 GVTAIAAGGDHTCALMSSG------GVMCW----GDNYYGQLGDGTTTNRRTPVAVSGLP 205
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
V ++ G HT ++ +G+VW WG G + + T + + A L SG
Sbjct: 206 SGVTAIAA--GGLHTCALTGSGEVWCWGYNY-YGQLGDGTTTYSRSTPAAVGGLPSGM-- 260
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A G HT + G +W WGR SG LG G D P V
Sbjct: 261 --------TAIAAGGLHTCALMSSG-GVWCWGRNDSGQLGDGSDTDSSTPVAV 304
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 91/211 (43%), Gaps = 38/211 (18%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVS-SFTPSPVWDFHGH 57
S + + AG + A+ ++G +W WG + L D +T + V+ S PS V
Sbjct: 564 SGVTVIAAGRFHTCALTSSGGVWCWGANFDGQLGDGTTTNRTTPVAVSGLPSGV------ 617
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+A G H AL S+GE + WG N GQLG G +R P +
Sbjct: 618 --TAIAAGGWHTCALTSSGEVW--------CWGDNYYGQLGDGTTTNRSTPGAVSGL--- 664
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVK 175
P V + G HT LT E CW G+N GQLG GTT + P V
Sbjct: 665 -PSGVTAIAAGWEHTCALTSSG------EVWCW----GDNYYGQLGDGTTTNRSTPGAVS 713
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
LP V ++ G++HT ++ +G V WG
Sbjct: 714 GLPSGVTAIAA--GVYHTCALTGSGGVMCWG 742
>gi|357464765|ref|XP_003602664.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
gi|358348400|ref|XP_003638235.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
gi|355491712|gb|AES72915.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
gi|355504170|gb|AES85373.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
Length = 439
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 130/294 (44%), Gaps = 46/294 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+I + G LA+ G + WG N L +TE S P + F G +
Sbjct: 121 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGTTE------DSLVPQKIQTFQGVPI 174
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
VA G+EH VA+ GE Y WG G LGLGDR R P E + D
Sbjct: 175 KMVAAGAEHSVAITENGELY--------GWGWGRYGNLGLGDRNDRCIP---EKVSVDCD 223
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V V CG HT ++ +T+G + GQLGHG + LVP +++
Sbjct: 224 KMVL-VACGWRHTISVSSSGE--------LYTYGWSKYGQLGHGDCKDHLVPHKLQAFSD 274
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNG 237
+ + V G HT +++ G ++ WG K +G+ N D SP+ +
Sbjct: 275 KL-ICQVSGGWRHTMALTTGGQLYGWGWNKFGQVGVGDNV--------DRCSPVQVKF-- 323
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P Q Q++CG HT+ VT+ ++SWGRG +G LG G TID+ P I+
Sbjct: 324 ---PHDQKVAQISCGWRHTIAVTEKD-NVYSWGRGTNGQLGIGDTIDWNYPKII 373
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 113/235 (48%), Gaps = 35/235 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+ ++ G H VAL+S ++VC SWG +GQLG GD + RL P + +
Sbjct: 17 VLLISAGGSHSVALISG-------NVVC-SWGRGEDGQLGHGDTDDRLLPTQLSALDAQQ 68
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ V CG+ HT + K +E W G G+ G+LGHG + +P+ ++ L
Sbjct: 69 ---IVSVVCGADHTLAYSESK-----VEVYSW--GWGDFGRLGHGNSSDLFIPQPIRAL- 117
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + + CG H V+ G+V SWG + N L D++ P I
Sbjct: 118 QGLRIKQIACGDSHCLAVTMEGEVQSWGRNQ------NGQLGLGTTEDSLVPQKIQ---- 167
Query: 239 HGPKFQD-PVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
FQ P++ VA GA H+V +T++G +L+ WG GR G LG G D P V
Sbjct: 168 ---TFQGVPIKMVAAGAEHSVAITENG-ELYGWGWGRYGNLGLGDRNDRCIPEKV 218
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 122/284 (42%), Gaps = 39/284 (13%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
+ AGG S+A+ + + WG + G P+ + +V V CG+
Sbjct: 20 ISAGGSHSVALISGNVVCSWGR---GEDGQLGHGDTDDRLLPTQLSALDAQQIVSVVCGA 76
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
+H +A Y + YSWG + G+LG G+ P+ I + ++
Sbjct: 77 DHTLA-------YSESKVEVYSWGWGDFGRLGHGNSSDLFIPQPIRALQ---GLRIKQIA 126
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSV 186
CG H +T +E ++G +NGQLG GTT+ +LVP++++ Q V + V
Sbjct: 127 CGDSHCLAVT--------MEGEVQSWGRNQNGQLGLGTTEDSLVPQKIQTF-QGVPIKMV 177
Query: 187 DCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
G H+ ++ G++ W WG LGL + D P +S +
Sbjct: 178 AAGAEHSVAITENGELYGWGWGRYGNLGL--------GDRNDRCIPEKVSVD------CD 223
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
V VACG HT+ V+ G +L+++G + G LG G D P
Sbjct: 224 KMVLVACGWRHTISVSSSG-ELYTYGWSKYGQLGHGDCKDHLVP 266
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 22/171 (12%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
V G ++++ ++G L+ +G G P + F + +V+ G
Sbjct: 228 VACGWRHTISVSSSGELYTYG---WSKYGQLGHGDCKDHLVPHKLQAFSDKLICQVSGGW 284
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
H +AL + G+ Y WG N GQ+G+GD R P ++ F D V +++
Sbjct: 285 RHTMALTTGGQLY--------GWGWNKFGQVGVGDNVDRCSPVQVK-FPHDQ--KVAQIS 333
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
CG HT +T + +++G G NGQLG G T P+ ++ L
Sbjct: 334 CGWRHTIAVTEKDN--------VYSWGRGTNGQLGIGDTIDWNYPKIIEAL 376
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
IC V G ++A+ G L+ WG G V +P V H V +++
Sbjct: 277 ICQVSGGWRHTMALTTGGQLYGWGWNKF---GQVGVGDNVDRCSPVQVKFPHDQKVAQIS 333
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
CG H +A+ E YSWG NGQLG+GD PKIIE + D
Sbjct: 334 CGWRHTIAVT--------EKDNVYSWGRGTNGQLGIGDTIDWNYPKIIEALSVD 379
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P+ V L+S G H+ + S V SWG + + L + D + P +S
Sbjct: 14 PRRVLLISA--GGSHSVALISGNVVCSWGRGE------DGQLGHGDTDDRLLPTQLSA-- 63
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
Q V V CGA HT+ ++ +++SWG G G LG G + D F P
Sbjct: 64 ---LDAQQIVSVVCGADHTLAYSESKVEVYSWGWGDFGRLGHGNSSDLFIP 111
>gi|115458498|ref|NP_001052849.1| Os04g0435700 [Oryza sativa Japonica Group]
gi|32487442|emb|CAE02741.1| OSJNBa0006B20.1 [Oryza sativa Japonica Group]
gi|113564420|dbj|BAF14763.1| Os04g0435700 [Oryza sativa Japonica Group]
gi|125548381|gb|EAY94203.1| hypothetical protein OsI_15977 [Oryza sativa Indica Group]
gi|125590466|gb|EAZ30816.1| hypothetical protein OsJ_14886 [Oryza sativa Japonica Group]
gi|215704772|dbj|BAG94800.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 453
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 113/236 (47%), Gaps = 33/236 (13%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV V+ G+ H VAL++ +++C SWG +GQLG GD E RL P ++ F+
Sbjct: 23 AVVLVSAGASHSVALLAG-------NVLC-SWGRGEDGQLGHGDAEDRLVPTVLSGFDAA 74
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+P + V CG+ HT + E +++G G+ G+LGHG + P+ VK L
Sbjct: 75 AP-GITSVICGADHTTAYSED-------EQQVYSWGWGDFGRLGHGNSSDVFTPQPVKAL 126
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
Q + + + CG H V+ AG+V SWG + N L D++ P I
Sbjct: 127 -QGIKIKQIACGDSHCLAVTMAGEVQSWGRNQ------NGQLGLGTTEDSLLPQKIQ--- 176
Query: 238 PHGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ +A GA HT VT+DG L+ WG GR G LG G D P V
Sbjct: 177 ----SFEGVCVKMIAAGAEHTAAVTEDG-DLYGWGWGRYGNLGLGDRNDRLVPEKV 227
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 116/249 (46%), Gaps = 32/249 (12%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
FTP PV G + ++ACG H +A+ AGE SWG N NGQLGLG E
Sbjct: 118 FTPQPVKALQGIKIKQIACGDSHCLAVTMAGEVQ--------SWGRNQNGQLGLGTTEDS 169
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
L P+ I++F V + G+ HTA +T + + +G G G LG G
Sbjct: 170 LLPQKIQSFEGV---CVKMIAAGAEHTAAVTE--------DGDLYGWGWGRYGNLGLGDR 218
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
LVPE+V + + +V + CG HT VSS+G ++++G K L +
Sbjct: 219 NDRLVPEKVSSV-EGEKMVLIACGWRHTITVSSSGSLYTYGWSK------YGQLGHGDFE 271
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
D + P + K Q++ G HT+ +T DG KL+ WG + G +G G T D
Sbjct: 272 DHLVPHKL-----EALKDSSISQISGGWRHTMALTSDG-KLYGWGWNKFGQVGVGDTDDH 325
Query: 286 FAPAIVLWP 294
P V +P
Sbjct: 326 CFPVQVKFP 334
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 128/292 (43%), Gaps = 41/292 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+I + G LA+ AG + WG N L +TE S P + F G V
Sbjct: 130 KIKQIACGDSHCLAVTMAGEVQSWGRNQNGQLGLGTTE------DSLLPQKIQSFEGVCV 183
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+A G+EH A+ ED Y WG G LGLGDR RL P+ + + +
Sbjct: 184 KMIAAGAEHTAAVT--------EDGDLYGWGWGRYGNLGLGDRNDRLVPEKVSSVEGEK- 234
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ + CG HT ++ +T+G + GQLGHG + LVP +++ L
Sbjct: 235 --MVLIACGWRHTITVSS--------SGSLYTYGWSKYGQLGHGDFEDHLVPHKLEALKD 284
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ + G HT ++S G ++ WG K + + D P+ +
Sbjct: 285 S-SISQISGGWRHTMALTSDGKLYGWGWNK------FGQVGVGDTDDHCFPVQVKF---- 333
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P+ Q QVACG HT+ T+ ++SWGRG SG LG G+ +D P ++
Sbjct: 334 -PEDQKVAQVACGWRHTLAFTEK-KNVFSWGRGTSGQLGHGEIVDRNKPVMI 383
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S I + G ++A+ + G L+ WG G + F P V V +
Sbjct: 285 SSISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV--GDTDDHCF-PVQVKFPEDQKVAQ 341
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
VACG H +A E +SWG +GQLG G+ R +P +I+ + D P
Sbjct: 342 VACGWRHTLAFT--------EKKNVFSWGRGTSGQLGHGEIVDRNKPVMIDALSPDGP 391
>gi|118349964|ref|XP_001008263.1| Regulator of chromosome condensation [Tetrahymena thermophila]
gi|89290030|gb|EAR88018.1| Regulator of chromosome condensation [Tetrahymena thermophila
SB210]
Length = 2290
Score = 106 bits (265), Expect = 2e-20, Method: Composition-based stats.
Identities = 73/245 (29%), Positives = 114/245 (46%), Gaps = 48/245 (19%)
Query: 38 GGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQL 97
G + V+ + P+ + + ++VACGS H +AL G+ + +WG N GQL
Sbjct: 322 GNENFVNVYEPTELLVWPKRKFIQVACGSSHSMALTDNGQIF--------TWGKNTRGQL 373
Query: 98 GLGDRESRLRPK--IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG 155
G G R +L+P IIE + G H+A ++ K +T+G G
Sbjct: 374 GQGHRNDQLKPTMIIIEVM-------ATSICSGDQHSAFISDEKE--------LYTWGNG 418
Query: 156 ENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCP 215
+ +LGHG T L P++V L + VY+ V CG+ HT +++ G V++W
Sbjct: 419 QYFRLGHGVTTDELYPKKVVVL-EDVYVTHVSCGMTHTLAITNEGFVYAW---------- 467
Query: 216 NASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSG 275
GD +S L G + P +V+ G H++ +TD G L+SWG + G
Sbjct: 468 ---------GDGMSGKL--GVQENNKSLHLPTRVSAGGLHSMALTDQGI-LYSWGSSKGG 515
Query: 276 VLGTG 280
VLG G
Sbjct: 516 VLGIG 520
Score = 54.3 bits (129), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 27/174 (15%)
Query: 37 EGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQ 96
E +SL+ F P + + + ++ ++C H +A+ ++KG V YSWG+N Q
Sbjct: 771 EQNYSLIFDF-PFLI-PYFKNKIIFMSCSYTHAIAI-----SHKG---VAYSWGSNKYYQ 820
Query: 97 LGLGD--RESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGL 154
LGLG + + + KI + TC +ALLT + WTFG
Sbjct: 821 LGLGYMCKYNHIPQKIQGALETKR---IIMSTCSDRFSALLTDKGE--------IWTFGT 869
Query: 155 GENGQLGHGTTQSALV--PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
++G LGH +V P+ + ++P ++L S G+ ++ +++WG
Sbjct: 870 SDSGVLGHDEKNYYVVSEPKMINDIPPMIFLASGPQGMM--AITEQKRQIYAWG 921
Score = 47.4 bits (111), Expect = 0.014, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 25/145 (17%)
Query: 186 VDCGLFHTSVVSSAGDVWSWGM----------EKGLGLCPNASLTRNEAGDA-------I 228
V CG HT V++ G ++ +GM E L L + + + + G+
Sbjct: 273 VSCGHHHTLVITDQGTIFYFGMGTQGKLFLLRECQLLLQNKSKIQKGQLGNENFVNVYEP 332
Query: 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ +L+ PK + +QVACG++H++ +TD+G ++++WG+ G LG G D P
Sbjct: 333 TELLV------WPK-RKFIQVACGSSHSMALTDNG-QIFTWGKNTRGQLGQGHRNDQLKP 384
Query: 289 AIVLWPPLTEEFKQDELNTGGLDDE 313
+++ + + ++ + DE
Sbjct: 385 TMIIIEVMATSICSGDQHSAFISDE 409
Score = 46.2 bits (108), Expect = 0.030, Method: Composition-based stats.
Identities = 44/212 (20%), Positives = 84/212 (39%), Gaps = 45/212 (21%)
Query: 103 ESRLRPKIIET-FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG------ 155
+S +R + +T N++ + V+CG HT ++T + + FG+G
Sbjct: 250 QSFVRSYVNKTEINEEIKDGIKHVSCGHHHTLVITD--------QGTIFYFGMGTQGKLF 301
Query: 156 ---------------ENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAG 200
+ GQLG+ + P ++ P+ + + V CG H+ ++ G
Sbjct: 302 LLRECQLLLQNKSKIQKGQLGNENFVNVYEPTELLVWPKRKF-IQVACGSSHSMALTDNG 360
Query: 201 DVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT 260
+++WG L + D + P +I + G H+ ++
Sbjct: 361 QIFTWGKNT------RGQLGQGHRNDQLKPTMIIIE-------VMATSICSGDQHSAFIS 407
Query: 261 DDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
D+ +L++WG G+ LG G T D P V+
Sbjct: 408 DEK-ELYTWGNGQYFRLGHGVTTDELYPKKVV 438
>gi|226495309|ref|NP_001141147.1| putative regulator of chromosome condensation (RCC1) family protein
[Zea mays]
gi|194702882|gb|ACF85525.1| unknown [Zea mays]
gi|224030327|gb|ACN34239.1| unknown [Zea mays]
gi|414587150|tpg|DAA37721.1| TPA: putative regulator of chromosome condensation (RCC1) family
protein [Zea mays]
Length = 443
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 115/237 (48%), Gaps = 35/237 (14%)
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
TVV V+ G+ H VAL++ +++C SWG +GQLG GD E RL P ++ F
Sbjct: 13 QTVVLVSAGASHSVALLTG-------NVLC-SWGRGEDGQLGHGDAEDRLVPTVLSGF-- 62
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
D+P A+ V CG+ HT + D L+ W G G+ G+LGHG + P+ VK
Sbjct: 63 DAP-AITSVICGADHTTAYSE-----DELQVYSW--GWGDFGRLGHGNSSDVFTPQPVKA 114
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L Q + + + CG H V+ AG+V SWG + N L D++ P I
Sbjct: 115 L-QGLKIKQIACGDSHCLAVTMAGEVQSWGRNQ------NGQLGLGTTEDSLLPQKIQ-- 165
Query: 237 GPHGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ +A GA HT VT+DG L+ WG GR G LG G D P V
Sbjct: 166 -----AFESVCVKMIAAGAEHTAAVTEDG-DLYGWGWGRYGNLGLGDRNDRLLPEKV 216
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 130/292 (44%), Gaps = 41/292 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+I + G LA+ AG + WG N L +TE S P + F V
Sbjct: 119 KIKQIACGDSHCLAVTMAGEVQSWGRNQNGQLGLGTTE------DSLLPQKIQAFESVCV 172
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+A G+EH A+ ED Y WG G LGLGDR RL P+ + + +
Sbjct: 173 KMIAAGAEHTAAVT--------EDGDLYGWGWGRYGNLGLGDRNDRLLPEKVSSVEGEK- 223
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V CG HT ++ +T+G + GQLGHG + LVP +V+ L
Sbjct: 224 --MVLVACGWRHTITVSDSGN--------LYTYGWSKYGQLGHGDFEDHLVPHKVEALKD 273
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ + G HT ++S G ++ WG K + N+ D SP +S
Sbjct: 274 ST-ISQISGGWRHTMALTSEGKLYGWGWNK----FGQVGVGNND--DHSSPGQVSF---- 322
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P+ Q QVACG HT+ +++ ++SWGRG SG LG G+ +D P ++
Sbjct: 323 -PEDQKISQVACGWRHTLALSEK-KNVFSWGRGTSGQLGNGEIVDRNTPVLI 372
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 125/287 (43%), Gaps = 38/287 (13%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
V AG S+A+ L WG + G P+ + F + V CG+
Sbjct: 18 VSAGASHSVALLTGNVLCSWGRG---EDGQLGHGDAEDRLVPTVLSGFDAPAITSVICGA 74
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
+H A Y ++L YSWG + G+LG G+ P+ ++ + ++
Sbjct: 75 DHTTA-------YSEDELQVYSWGWGDFGRLGHGNSSDVFTPQPVKALQG---LKIKQIA 124
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSV 186
CG H +T + ++G +NGQLG GTT+ +L+P++++ + V + +
Sbjct: 125 CGDSHCLAVT--------MAGEVQSWGRNQNGQLGLGTTEDSLLPQKIQAF-ESVCVKMI 175
Query: 187 DCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
G HT+ V+ GD+ W WG LGL + D + P +S G K
Sbjct: 176 AAGAEHTAAVTEDGDLYGWGWGRYGNLGL--------GDRNDRLLPEKVS--SVEGEKM- 224
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VACG HT+ V+D G L+++G + G LG G D P V
Sbjct: 225 --VLVACGWRHTITVSDSG-NLYTYGWSKYGQLGHGDFEDHLVPHKV 268
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
PQ V LVS G H+ + + + SWG + + L +A D + P ++SG
Sbjct: 12 PQTVVLVS--AGASHSVALLTGNVLCSWGRGE------DGQLGHGDAEDRLVPTVLSG-- 61
Query: 238 PHGPKFQDP--VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F P V CGA HT ++D +++SWG G G LG G + D F P V
Sbjct: 62 -----FDAPAITSVICGADHTTAYSEDELQVYSWGWGDFGRLGHGNSSDVFTPQPV 112
>gi|312282233|dbj|BAJ33982.1| unnamed protein product [Thellungiella halophila]
Length = 440
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 133/294 (45%), Gaps = 45/294 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+I + G LA+ G + WG N L TE S P + F G +
Sbjct: 121 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTE------DSLVPQKIQAFEGIRI 174
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
VA G+EH A+ ED Y WG G LGLGDR RL P+ + + +
Sbjct: 175 KMVAAGAEHTAAVT--------EDGDLYGWGWGRYGNLGLGDRNDRLVPERVTSAGGEK- 225
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V CG HT +++ +T+G + GQLGHG + LVP +++ L
Sbjct: 226 --MSMVACGWRHTISVSY--------SGALYTYGWSKYGQLGHGDLEDHLVPHKLEALGN 275
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNG 237
V + + G HT ++S G ++ WG K +G+ N D SP+ +
Sbjct: 276 SV-ISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV---- 322
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P Q VQV+CG HT+ VT+ +++WGRG +G LG G+++D P I+
Sbjct: 323 -RIPDDQKVVQVSCGWRHTLAVTERN-NVFAWGRGTNGQLGIGESLDRNFPKII 374
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 113/250 (45%), Gaps = 37/250 (14%)
Query: 42 LVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD 101
+ TP P V+ ++ G+ H VAL+S D+VC SWG +GQLG GD
Sbjct: 6 VADEVTPPP------RRVLIISAGASHSVALLSG-------DIVC-SWGRGEDGQLGHGD 51
Query: 102 RESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
E RL P + + + VTCG+ HT + + +E W G G+ G+LG
Sbjct: 52 AEDRLSPTQLSALDDHQ---IVSVTCGADHTVAYSESR-----MEVYSW--GWGDFGRLG 101
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTR 221
HG + P +K L + + + CG H V+ G+V SWG + N L
Sbjct: 102 HGNSSDLFTPLPIKAL-HGIRIKQIACGDSHCLAVTMEGEVQSWGRNQ------NGQLGL 154
Query: 222 NEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+ D++ P I G + + VA GA HT VT+DG L+ WG GR G LG G
Sbjct: 155 GDTEDSLVPQKIQAF--EGIRIK---MVAAGAEHTAAVTEDG-DLYGWGWGRYGNLGLGD 208
Query: 282 TIDFFAPAIV 291
D P V
Sbjct: 209 RNDRLVPERV 218
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 127/288 (44%), Gaps = 38/288 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + AG S+A+ + + WG + G +P+ + H +V V
Sbjct: 16 RVLIISAGASHSVALLSGDIVCSWGRG---EDGQLGHGDAEDRLSPTQLSALDDHQIVSV 72
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
CG++H VA Y + YSWG + G+LG G+ P I+ + +
Sbjct: 73 TCGADHTVA-------YSESRMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIR---I 122
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG H +T +E ++G +NGQLG G T+ +LVP++++ + +
Sbjct: 123 KQIACGDSHCLAVT--------MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF-EGIR 173
Query: 183 LVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ V G HT+ V+ GD+ W WG LGL + D + P ++ G G
Sbjct: 174 IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL--------GDRNDRLVPERVTSAG--G 223
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
K VACG HT+ V+ G L+++G + G LG G D P
Sbjct: 224 EKMS---MVACGWRHTISVSYSG-ALYTYGWSKYGQLGHGDLEDHLVP 267
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 169 LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
+V ++V P+ V ++S G H+ + S V SWG + + L +A D +
Sbjct: 5 MVADEVTPPPRRVLIIS--AGASHSVALLSGDIVCSWGRGE------DGQLGHGDAEDRL 56
Query: 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
SP +S H V V CGA HTV ++ +++SWG G G LG G + D F P
Sbjct: 57 SPTQLSALDDH-----QIVSVTCGADHTVAYSESRMEVYSWGWGDFGRLGHGNSSDLFTP 111
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 22/175 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G ++++ +GAL+ +G G L P + + ++
Sbjct: 225 KMSMVACGWRHTISVSYSGALYTYG---WSKYGQLGHGDLEDHLVPHKLEALGNSVISQI 281
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL S G+ Y WG N GQ+G+G+ + P + + V
Sbjct: 282 SGGWRHTMALTSDGK--------LYGWGWNKFGQVGVGNNLDQCSPVQVRIPDDQK---V 330
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+V+CG HT +T R + +G G NGQLG G + P+ ++ L
Sbjct: 331 VQVSCGWRHTLAVTERNN--------VFAWGRGTNGQLGIGESLDRNFPKIIEAL 377
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S I + G ++A+ + G L+ WG S P V VV+
Sbjct: 276 SVISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS---PVQVRIPDDQKVVQ 332
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+CG H +A+ E ++WG NGQLG+G+ R PKIIE + D
Sbjct: 333 VSCGWRHTLAVT--------ERNNVFAWGRGTNGQLGIGESLDRNFPKIIEALSVD 380
>gi|440793979|gb|ELR15150.1| regulator of chromosome condensation (RCC1) repeat domain
containing protein [Acanthamoeba castellanii str. Neff]
Length = 566
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 130/346 (37%), Gaps = 89/346 (25%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
+ G + A + AG L+ WG G F P V G VV+ ACG
Sbjct: 183 IACGAAHTAAWNGAGVLYTWG----AGQGRLGHDHERDRFIPLEVSALGGKKVVQAACGY 238
Query: 67 EHVVALVSAGETY-----------KGEDLVC----------------------------- 86
H A+ AG Y G++ C
Sbjct: 239 AHTAAITDAGRVYTWGQGKGGVLGHGDESACSTPREVASLALQVIVVVIVVVVVAAVVAG 298
Query: 87 -----YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
Y+WG N GQLG GDR R+ P ++ + ++ + C + L R+
Sbjct: 299 GSGTVYAWGGNEKGQLGFGDRTPRMSPALLADLS-----SISRIACTYLQSNLPVKRRHR 353
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
L WT+G G +GQLGHGT + LVP QV L Q V +++V G HT+ ++S G+
Sbjct: 354 ARQLMMRMWTWGDGASGQLGHGTEEEELVPRQVMALEQ-VNIIAVAAGKAHTAALTSQGE 412
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
VW+WG L A++ R P+LI + D
Sbjct: 413 VWTWGDGSDGQLGHGAAILRY-----CKPLLIES-----------------------LKD 444
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNT 307
G+ L++WG R G LG G A +V P E + ++
Sbjct: 445 SGH-LYAWGNSRRGALGGG-----LAEEVVSVPRAVEAMEGKKVKA 484
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 99/253 (39%), Gaps = 42/253 (16%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P V G V +ACG+ H A AG V Y+WGA G+LG R
Sbjct: 169 PRVVEALLGKDVRGIACGAAHTAAWNGAG--------VLYTWGAGQ-GRLGHDHERDRFI 219
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
P + V + CG HTA +T R +T+G G+ G LGHG +
Sbjct: 220 PLEVSALGGKK---VVQAACGYAHTAAITDAGR--------VYTWGQGKGGVLGHGDESA 268
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG-MEKGLGLCPNASLTRNEAGD 226
P +V L V +V + + V +G V++WG EKG L +
Sbjct: 269 CSTPREVASLALQVIVVVIVVVVVAAVVAGGSGTVYAWGGNEKG-------QLGFGDRTP 321
Query: 227 AISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK-------LWSWGRGRSGVLGT 279
+SP L++ ++AC + L ++ +W+WG G SG LG
Sbjct: 322 RMSPALLA-------DLSSISRIACTYLQSNLPVKRRHRARQLMMRMWTWGDGASGQLGH 374
Query: 280 GKTIDFFAPAIVL 292
G + P V+
Sbjct: 375 GTEEEELVPRQVM 387
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 15/121 (12%)
Query: 91 ANNNGQLGLGDRESRLRPKIIET-FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
+N+NG++G GD E P+++E +D V + CG+ HTA +
Sbjct: 152 SNDNGRVGHGDEEDHKVPRVVEALLGKD----VRGIACGAAHTAAWNG--------AGVL 199
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+T+G G+ G+LGH + +P +V L +V CG HT+ ++ AG V++WG K
Sbjct: 200 YTWGAGQ-GRLGHDHERDRFIPLEVSALGGK-KVVQAACGYAHTAAITDAGRVYTWGQGK 257
Query: 210 G 210
G
Sbjct: 258 G 258
>gi|195622006|gb|ACG32833.1| HECT domain and RCC1-like domain-containing protein 2 [Zea mays]
Length = 353
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 115/237 (48%), Gaps = 35/237 (14%)
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
TVV V+ G+ H VAL++ +++C SWG +GQLG GD E RL P ++ F
Sbjct: 13 QTVVLVSAGASHSVALLTG-------NVLC-SWGRGEDGQLGHGDAEDRLVPTVLSGF-- 62
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
D+P A+ V CG+ HT + D L+ W G G+ G+LGHG + P+ VK
Sbjct: 63 DAP-AITSVICGADHTTAYS-----EDELQVYSW--GWGDFGRLGHGNSSDVFTPQPVKA 114
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L Q + + + CG H V+ AG+V SWG + N L D++ P I
Sbjct: 115 L-QGLKIKQIACGDSHCLAVTMAGEVQSWGRNQ------NGQLGLGTTEDSLLPQKIQ-- 165
Query: 237 GPHGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ +A GA HT VT+DG L+ WG GR G LG G D P V
Sbjct: 166 -----AFESVCVKMIAAGAEHTAAVTEDG-DLYGWGWGRYGNLGLGDRNDRLLPEKV 216
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 115/249 (46%), Gaps = 32/249 (12%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
FTP PV G + ++ACG H +A+ AGE SWG N NGQLGLG E
Sbjct: 107 FTPQPVKALQGLKIKQIACGDSHCLAVTMAGEVQ--------SWGRNQNGQLGLGTTEDS 158
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
L P+ I+ F V + G+ HTA +T + + +G G G LG G
Sbjct: 159 LLPQKIQAFESV---CVKMIAAGAEHTAAVTE--------DGDLYGWGWGRYGNLGLGDR 207
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
L+PE+V + + +V V CG HT VS +G+++++G K L +
Sbjct: 208 NDRLLPEKVSSV-EGEKMVLVACGWRHTITVSDSGNLYTYGWSK------YGQLGHGDFE 260
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
D + P + K Q++ G HT+ +T +G KL+ WG + G +G G D
Sbjct: 261 DHLVPHKVE-----ALKDSTISQISGGWRHTMALTSEG-KLYGWGWNKFGQVGVGNNDDH 314
Query: 286 FAPAIVLWP 294
+P V +P
Sbjct: 315 SSPGQVSFP 323
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 125/287 (43%), Gaps = 38/287 (13%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
V AG S+A+ L WG + G P+ + F + V CG+
Sbjct: 18 VSAGASHSVALLTGNVLCSWGR---GEDGQLGHGDAEDRLVPTVLSGFDAPAITSVICGA 74
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
+H A Y ++L YSWG + G+LG G+ P+ ++ + ++
Sbjct: 75 DHTTA-------YSEDELQVYSWGWGDFGRLGHGNSSDVFTPQPVKALQG---LKIKQIA 124
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSV 186
CG H +T + ++G +NGQLG GTT+ +L+P++++ + V + +
Sbjct: 125 CGDSHCLAVT--------MAGEVQSWGRNQNGQLGLGTTEDSLLPQKIQAF-ESVCVKMI 175
Query: 187 DCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
G HT+ V+ GD+ W WG LGL + D + P +S G K
Sbjct: 176 AAGAEHTAAVTEDGDLYGWGWGRYGNLGL--------GDRNDRLLPEKVS--SVEGEKM- 224
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VACG HT+ V+D G L+++G + G LG G D P V
Sbjct: 225 --VLVACGWRHTITVSDSG-NLYTYGWSKYGQLGHGDFEDHLVPHKV 268
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
PQ V LVS G H+ + + + SWG + + L +A D + P ++SG
Sbjct: 12 PQTVVLVSA--GASHSVALLTGNVLCSWGRGE------DGQLGHGDAEDRLVPTVLSG-- 61
Query: 238 PHGPKFQDP--VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F P V CGA HT ++D +++SWG G G LG G + D F P V
Sbjct: 62 -----FDAPAITSVICGADHTTAYSEDELQVYSWGWGDFGRLGHGNSSDVFTPQPV 112
>gi|387193358|gb|AFJ68699.1| hypothetical protein NGATSA_3056200, partial [Nannochloropsis
gaditana CCMP526]
Length = 511
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 132/289 (45%), Gaps = 36/289 (12%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I V G + AI + GALW WG G + V P V F G V ++A
Sbjct: 93 IKQVTCGSYHTAAISDTGALWTWGGGMY---GKLGHGNEVGHPAPCRVEAFIGREVEQIA 149
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRLRPKIIETFNQDSPWAV 122
CGS H AL++ GE Y WG NG G+G+ E + PK +E +
Sbjct: 150 CGSRHTAALLAGGEV--------YCWGDRENGVCGIGEAAEHQYLPKKLEALKGVK---I 198
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ FHTA +T + W++G G+ G+LG G ++ + P V+ L Q V
Sbjct: 199 TQIAACGFHTAAITQ--------DGALWSWGEGKFGRLGQGNEKNQVTPCCVEGL-QGVR 249
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+ V CG FH++ V+ GDV ++G + + L + + P L+ G
Sbjct: 250 VKQVACGGFHSACVTEDGDVLTFGGGE------HGQLGHGDKTNRTVPCLVKALEGAG-- 301
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
VQV CG +HTV +++DG K++++G G G LG G P +V
Sbjct: 302 ---IVQVTCGWSHTVTLSEDG-KVFTFGNGDHGKLGHGANAKSALPKLV 346
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 114/253 (45%), Gaps = 49/253 (19%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P PV TVV++ACGS H V L ED +SWG ++G+LG D +
Sbjct: 30 PMPVEGLKHLTVVQIACGSGHTVVLT--------EDKDVWSWGRGDDGRLGHADNHWKYV 81
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
P ++ S + +VTCGS+HTA ++ WT+G G G+LGHG
Sbjct: 82 PHLVSALTGKS---IKQVTCGSYHTAAISD--------TGALWTWGGGMYGKLGHGNEVG 130
Query: 168 ALVPEQV-----KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
P +V +E+ Q + CG HT+ + + G+V+ WG ++ G+C +
Sbjct: 131 HPAPCRVEAFIGREVEQ------IACGSRHTAALLAGGEVYCWG-DRENGVCGIGEAAEH 183
Query: 223 E----AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
+ +A+ + I+ Q+A HT +T DG LWSWG G+ G LG
Sbjct: 184 QYLPKKLEALKGVKIT-------------QIAACGFHTAAITQDG-ALWSWGEGKFGRLG 229
Query: 279 TGKTIDFFAPAIV 291
G + P V
Sbjct: 230 QGNEKNQVTPCCV 242
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 13/146 (8%)
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSW 205
+SM +++G GE+GQ G+G+T +P V+ L +++ +V + CG HT V++ DVWSW
Sbjct: 5 DSMLYSWGRGEDGQCGNGSTNDQEMPMPVEGL-KHLTVVQIACGSGHTVVLTEDKDVWSW 63
Query: 206 GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
G + L + P L+S K QV CG+ HT ++D G
Sbjct: 64 GRGD------DGRLGHADNHWKYVPHLVSALTGKSIK-----QVTCGSYHTAAISDTG-A 111
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIV 291
LW+WG G G LG G + AP V
Sbjct: 112 LWTWGGGMYGKLGHGNEVGHPAPCRV 137
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 34/181 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
+I + A G + AI GALW WG EG F + + TP V G
Sbjct: 197 KITQIAACGFHTAAITQDGALWSWG---------EGKFGRLGQGNEKNQVTPCCVEGLQG 247
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
V +VACG H + G+ ++G +GQLG GD+ +R P +++
Sbjct: 248 VRVKQVACGGFHSACVTEDGDVL--------TFGGGEHGQLGHGDKTNRTVPCLVKALEG 299
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ +VTCG HT L+ + +TFG G++G+LGHG + +P+ V+
Sbjct: 300 A---GIVQVTCGWSHTVTLSE--------DGKVFTFGNGDHGKLGHGANAKSALPKLVES 348
Query: 177 L 177
L
Sbjct: 349 L 349
>gi|21741206|emb|CAD41017.1| OSJNBb0086G13.15 [Oryza sativa Japonica Group]
Length = 256
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 113/236 (47%), Gaps = 33/236 (13%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV V+ G+ H VAL++ +++C SWG +GQLG GD E RL P ++ F+
Sbjct: 23 AVVLVSAGASHSVALLAG-------NVLC-SWGRGEDGQLGHGDAEDRLVPTVLSGFDAA 74
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+P + V CG+ HT + E +++G G+ G+LGHG + P+ VK L
Sbjct: 75 AP-GITSVICGADHTTAYSED-------EQQVYSWGWGDFGRLGHGNSSDVFTPQPVKAL 126
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
Q + + + CG H V+ AG+V SWG + N L D++ P I
Sbjct: 127 -QGIKIKQIACGDSHCLAVTMAGEVQSWGRNQ------NGQLGLGTTEDSLLPQKIQ--- 176
Query: 238 PHGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ +A GA HT VT+DG L+ WG GR G LG G D P V
Sbjct: 177 ----SFEGVCVKMIAAGAEHTAAVTEDG-DLYGWGWGRYGNLGLGDRNDRLVPEKV 227
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
FTP PV G + ++ACG H +A+ AGE SWG N NGQLGLG E
Sbjct: 118 FTPQPVKALQGIKIKQIACGDSHCLAVTMAGEVQ--------SWGRNQNGQLGLGTTEDS 169
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
L P+ I++F V + G+ HTA +T + + +G G G LG G
Sbjct: 170 LLPQKIQSFEG---VCVKMIAAGAEHTAAVTE--------DGDLYGWGWGRYGNLGLGDR 218
Query: 166 QSALVPEQVKEL 177
LVPE+V +
Sbjct: 219 NDRLVPEKVSSV 230
>gi|326518338|dbj|BAJ88198.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326519062|dbj|BAJ96530.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 441
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 128/285 (44%), Gaps = 40/285 (14%)
Query: 24 WMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGED 83
W WG D G + FTP PV G + ++ACG H +A+ AGE
Sbjct: 91 WGWG-----DFGRLGHGNSTDVFTPQPVKALQGIKIKQLACGDSHCLAVTMAGEVL---- 141
Query: 84 LVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPND 143
SWG N NGQLGLG E L P+ I+ F S V + G+ HTA +T
Sbjct: 142 ----SWGRNQNGQLGLGTTEDSLLPQTIQAFEGIS---VKMIAAGAEHTAAVTE------ 188
Query: 144 MLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVW 203
+ + +G G G LG G VPE+V + + +V V CG HT VSS+G ++
Sbjct: 189 --DGDIYGWGWGRYGNLGLGDRNDRFVPEKVSSV-EGDKMVLVACGWRHTITVSSSGSLY 245
Query: 204 SWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++G K L + D + P + K Q++ G HT+ +T DG
Sbjct: 246 TYGWSK------YGQLGHGDFEDHLVPHKV-----EALKDSSTSQISGGWRHTMALTSDG 294
Query: 264 YKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTG 308
KL+ WG + G +G G D +PA V +P EE K ++ G
Sbjct: 295 -KLYGWGWNKFGQVGAGDNADHCSPAQVNFP---EEQKVAQVACG 335
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 128/292 (43%), Gaps = 41/292 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+I + G LA+ AG + WG N L +TE S P + F G +V
Sbjct: 120 KIKQLACGDSHCLAVTMAGEVLSWGRNQNGQLGLGTTE------DSLLPQTIQAFEGISV 173
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+A G+EH A+ ED Y WG G LGLGDR R P+ + + D
Sbjct: 174 KMIAAGAEHTAAVT--------EDGDIYGWGWGRYGNLGLGDRNDRFVPEKVSSVEGDK- 224
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V CG HT ++ +T+G + GQLGHG + LVP +V+ L
Sbjct: 225 --MVLVACGWRHTITVSS--------SGSLYTYGWSKYGQLGHGDFEDHLVPHKVEALKD 274
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ G HT ++S G ++ WG K + + D SP + +
Sbjct: 275 S-STSQISGGWRHTMALTSDGKLYGWGWNK------FGQVGAGDNADHCSPAQV-----N 322
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P+ Q QVACG HT+ T+ +++WGRG SG LG G+ +D P I+
Sbjct: 323 FPEEQKVAQVACGWRHTLAFTEK-KNVFAWGRGTSGQLGHGEIVDRNTPVII 373
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 118/238 (49%), Gaps = 41/238 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV V+ G+ H VAL++ +++C +WG +GQLG GD E RL P +I F D+
Sbjct: 16 VVLVSAGASHSVALLAG-------NVLC-TWGRGEDGQLGHGDAEDRLVPTVISGF--DA 65
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P + V CG+ HT + E +++G G+ G+LGHG + P+ VK L
Sbjct: 66 P-GITSVICGADHTTAYSED-------EHQVYSWGWGDFGRLGHGNSTDVFTPQPVKAL- 116
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRN-EAGDAISPILI 233
Q + + + CG H V+ AG+V SWG + GLG ++ L + +A + IS +I
Sbjct: 117 QGIKIKQLACGDSHCLAVTMAGEVLSWGRNQNGQLGLGTTEDSLLPQTIQAFEGISVKMI 176
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
A GA HT VT+DG ++ WG GR G LG G D F P V
Sbjct: 177 ----------------AAGAEHTAAVTEDG-DIYGWGWGRYGNLGLGDRNDRFVPEKV 217
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
E P V LVS G H+ + + + +WG + + L +A D + P +ISG
Sbjct: 11 EAPPAVVLVS--AGASHSVALLAGNVLCTWGRGE------DGQLGHGDAEDRLVPTVISG 62
Query: 236 NGPHGPKFQDP--VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F P V CGA HT ++D ++++SWG G G LG G + D F P V
Sbjct: 63 -------FDAPGITSVICGADHTTAYSEDEHQVYSWGWGDFGRLGHGNSTDVFTPQPV 113
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 11/118 (9%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S + G ++A+ + G L+ WG G +P+ V V +
Sbjct: 275 SSTSQISGGWRHTMALTSDGKLYGWGWNKF---GQVGAGDNADHCSPAQVNFPEEQKVAQ 331
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
VACG H +A E ++WG +GQLG G+ R P II+ + D P
Sbjct: 332 VACGWRHTLAFT--------EKKNVFAWGRGTSGQLGHGEIVDRNTPVIIDALSPDGP 381
>gi|168008673|ref|XP_001757031.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691902|gb|EDQ78262.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 420
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 125/290 (43%), Gaps = 43/290 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+I + G LAI G + WG N L TE P+ V F G V
Sbjct: 120 EIKQIACGDSHCLAITGDGEVHSWGRNQNGQLGLGHTE------DVLVPNKVAAFEGIAV 173
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+A G+EH A+ +G+ Y WG G LGLGDR RL P + +
Sbjct: 174 KMLAAGAEHTAAVTESGKLY--------GWGWGRYGNLGLGDRNDRLVPGEVAAVPGEK- 224
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V CG HT + + +TFG + GQLGHG + LVP QV+ L
Sbjct: 225 --MNLVACGWRHTIAVAN--------SGNLYTFGWSKYGQLGHGDFEDHLVPHQVQALKN 274
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEK-GLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V G HT + G+++ WG K G C N D SP LI+G
Sbjct: 275 KT-IQAVSGGWRHTVALDEDGELYGWGWNKFGQVGCGNTD-------DHNSPKLITG--- 323
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ +V CG HTV +TD G ++SWGRG SG LG G +D P
Sbjct: 324 --IVNEKVTRVTCGWRHTVAITDRG-NVYSWGRGTSGQLGHGDAVDRCVP 370
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 109/237 (45%), Gaps = 31/237 (13%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+ V+ G+ H VAL+S DLVC SWG +GQLG GD E R P +I +
Sbjct: 16 VISVSAGASHTVALLSG-------DLVC-SWGRGEDGQLGHGDAEERHLPLVISALDDCE 67
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ +TCG+ HT + R +++G G+ G+LGHG + +P +K L
Sbjct: 68 ---ISSITCGADHTTARSESTR-------TVYSWGWGDFGRLGHGNSSDLFIPRAIKGL- 116
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ + + + CG H ++ G+V SWG + N L D + P ++
Sbjct: 117 KGLEIKQIACGDSHCLAITGDGEVHSWGRNQ------NGQLGLGHTEDVLVPNKVAAFEG 170
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
K +A GA HT VT+ G KL+ WG GR G LG G D P V P
Sbjct: 171 IAVKM-----LAAGAEHTAAVTESG-KLYGWGWGRYGNLGLGDRNDRLVPGEVAAVP 221
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 22/171 (12%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
V G ++A+ N+G L+ +G G P V T+ V+ G
Sbjct: 228 VACGWRHTIAVANSGNLYTFG---WSKYGQLGHGDFEDHLVPHQVQALKNKTIQAVSGGW 284
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
H VAL GE Y WG N GQ+G G+ + PK+I + V VT
Sbjct: 285 RHTVALDEDGELY--------GWGWNKFGQVGCGNTDDHNSPKLITGIVNEK---VTRVT 333
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
CG HT +T R +++G G +GQLGHG VP++++ L
Sbjct: 334 CGWRHTVAITDRGN--------VYSWGRGTSGQLGHGDAVDRCVPKRIELL 376
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 47/121 (38%), Gaps = 25/121 (20%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWG-------NCPLPDSSTEGGFSLVSSFTPSPVWDFHG 56
I +V G ++A+D G L+ WG C D +P +
Sbjct: 277 IQAVSGGWRHTVALDEDGELYGWGWNKFGQVGCGNTDDHN----------SPKLITGIVN 326
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
V +V CG H VA+ G Y SWG +GQLG GD R PK IE +
Sbjct: 327 EKVTRVTCGWRHTVAITDRGNVY--------SWGRGTSGQLGHGDAVDRCVPKRIELLSA 378
Query: 117 D 117
D
Sbjct: 379 D 379
>gi|168052711|ref|XP_001778783.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669789|gb|EDQ56369.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 461
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 126/295 (42%), Gaps = 47/295 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ + G LAI G + WG N L TE TP + F G V
Sbjct: 120 EVKQIACGDSHCLAITTDGEVLGWGRNQNGQLGLGHTE------DVLTPHKLTAFEGVAV 173
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+A G+EH A+ G+ Y WG G LGLGDRE RL P + +
Sbjct: 174 KMLAAGAEHTTAVTENGK--------LYGWGWGRYGNLGLGDREDRLVPDQVAAVAGE-- 223
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V CG HT + +TFG + GQLGHG L+P QV+ L +
Sbjct: 224 -LMKMVACGWRHTICVAE--------SGNMYTFGWSKYGQLGHGDFADHLIPHQVQAL-K 273
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEK-GLGLCPNASLTRNEAGDAISPILISGNGP 238
+ ++ G HT + S G ++ WG K G C N D SP L+ G
Sbjct: 274 SKKIQAITGGWRHTFALDSDGRLYGWGWNKFGQVGCGNTE-------DQSSPQLVKG--- 323
Query: 239 HGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
QD V V CG HT+ +TD G ++SWGRG SG LG G T+D P +
Sbjct: 324 ----LQDQVVTVVQCGWRHTLAMTDRG-NVYSWGRGTSGQLGHGDTVDRSTPKRI 373
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 113/233 (48%), Gaps = 31/233 (13%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+ ++ G+ H VAL+S DLVC SWG +GQLG GD E R P I+ +
Sbjct: 16 VLALSAGASHSVALLSG-------DLVC-SWGRGEDGQLGHGDAEERHFPTIVSALDD-- 65
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ VTCG+ HT L++ + +++G G+ G+LGHG + +P+ +K L
Sbjct: 66 -CEISSVTCGADHTTALSNSTK-------TVYSWGWGDFGRLGHGNSSDLFIPQPIKAL- 116
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ + + + CG H +++ G+V WG + N L D ++P ++
Sbjct: 117 KGLEVKQIACGDSHCLAITTDGEVLGWGRNQ------NGQLGLGHTEDVLTPHKLTAFEG 170
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K +A GA HT VT++G KL+ WG GR G LG G D P V
Sbjct: 171 VAVKM-----LAAGAEHTTAVTENG-KLYGWGWGRYGNLGLGDREDRLVPDQV 217
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 67/174 (38%), Gaps = 33/174 (18%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
IC ++G M + G L G P V + +
Sbjct: 236 ICVAESGNMYTFGWSKYGQL--------------GHGDFADHLIPHQVQALKSKKIQAIT 281
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G H AL S G Y WG N GQ+G G+ E + P++++ QD V
Sbjct: 282 GGWRHTFALDSDGR--------LYGWGWNKFGQVGCGNTEDQSSPQLVKGL-QDQ--VVT 330
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V CG HT +T R +++G G +GQLGHG T P++++ L
Sbjct: 331 VVQCGWRHTLAMTDRGN--------VYSWGRGTSGQLGHGDTVDRSTPKRIEIL 376
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 11/115 (9%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I ++ G + A+D+ G L+ WG G + +P V V V
Sbjct: 276 KIQAITGGWRHTFALDSDGRLYGWGWNKF---GQVGCGNTEDQSSPQLVKGLQDQVVTVV 332
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
CG H +A+ G Y SWG +GQLG GD R PK IE + D
Sbjct: 333 QCGWRHTLAMTDRGNVY--------SWGRGTSGQLGHGDTVDRSTPKRIEILSSD 379
>gi|95007393|emb|CAJ20613.1| uvb-resistance protein uvr8, putative [Toxoplasma gondii RH]
Length = 918
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 136/299 (45%), Gaps = 68/299 (22%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL---VSSFTPSPVWDFHGHTVVKVA 63
V AGGM + ++G L+MWG +++EG + P V HG V VA
Sbjct: 18 VSAGGMQMAVVAHSGELYMWG------ANSEGQLGTGDRRDASVPRLVKALHGKVVKAVA 71
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL------------------GDRESR 105
C EH V + +D Y+WG NG+LGL G R
Sbjct: 72 CSQEHTVCCL--------DDGSAYAWGCALNGRLGLHGLSIPSSAGLGVFSPATGARPEP 123
Query: 106 L-------RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENG 158
L P+++E+ + + +V CG +H+A L ++ L +T GLG NG
Sbjct: 124 LASACAVCTPRVLESLCG---YFIADVACGPYHSAFLGIYEQDRTSL----FTCGLGLNG 176
Query: 159 QLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLC 214
+LGHG + +P V L + V + ++ CG HT+ V+SAG +++WG GLG
Sbjct: 177 RLGHGDEEDRHLPTAVHAL-ENVNITAIACGAHHTACVTSAGTLYTWGGAAFGKLGLG-- 233
Query: 215 PNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGR 273
+ G + P +SG + + V VA G+ H+ VT DG +L++WG+GR
Sbjct: 234 -------STRGSQLLPKHVSGP----LRNKAVVSVALGSQHSACVTTDG-ELYTWGQGR 280
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 24/168 (14%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRL 106
P+ V + +ACG+ H + SAG Y+WG G+LGLG R S+L
Sbjct: 189 PTAVHALENVNITAIACGAHHTACVTSAG--------TLYTWGGAAFGKLGLGSTRGSQL 240
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
PK + ++ AV V GS H+A +T + +T+G G +LGH
Sbjct: 241 LPKHVSGPLRNK--AVVSVALGSQHSACVT--------TDGELYTWGQGR--RLGHEVQG 288
Query: 167 SA--LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLG 212
+ ++P +V+ L ++++ V CG HT+ + G+VW+WG + LG
Sbjct: 289 ESDEILPRRVEAL-LGLFVIHVVCGDAHTACIVENGNVWAWGTSRILG 335
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 96/247 (38%), Gaps = 53/247 (21%)
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+V+ G + + +GE Y WGAN+ GQLG GDR P++++ +
Sbjct: 17 RVSAGGMQMAVVAHSGELYM--------WGANSEGQLGTGDRRDASVPRLVKALHGK--- 65
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-HG---------------- 163
V V C HT + + + +G NG+LG HG
Sbjct: 66 VVKAVACSQEHTVCC--------LDDGSAYAWGCALNGRLGLHGLSIPSSAGLGVFSPAT 117
Query: 164 --------TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCP 215
+ + P ++ L Y ++ V CG +H++ + + GLGL
Sbjct: 118 GARPEPLASACAVCTPRVLESLCGY-FIADVACGPYHSAFLGIYEQDRTSLFTCGLGL-- 174
Query: 216 NASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSG 275
N L + D P + H + + +ACGA HT VT G L++WG G
Sbjct: 175 NGRLGHGDEEDRHLPTAV-----HALENVNITAIACGAHHTACVTSAG-TLYTWGGAAFG 228
Query: 276 VLGTGKT 282
LG G T
Sbjct: 229 KLGLGST 235
>gi|326507328|dbj|BAJ95741.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 343
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 128/285 (44%), Gaps = 40/285 (14%)
Query: 24 WMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGED 83
W WG D G + FTP PV G + ++ACG H +A+ AGE
Sbjct: 91 WGWG-----DFGRLGHGNSTDVFTPQPVKALQGIKIKQLACGDSHCLAVTMAGEVL---- 141
Query: 84 LVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPND 143
SWG N NGQLGLG E L P+ I+ F S V + G+ HTA +T
Sbjct: 142 ----SWGRNQNGQLGLGTTEDSLLPQTIQAFEGIS---VKMIAAGAEHTAAVTE------ 188
Query: 144 MLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVW 203
+ + +G G G LG G VPE+V + + +V V CG HT VSS+G ++
Sbjct: 189 --DGDIYGWGWGRYGNLGLGDRNDRFVPEKVSSV-EGDKMVLVACGWRHTITVSSSGSLY 245
Query: 204 SWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++G K L + D + P + K Q++ G HT+ +T DG
Sbjct: 246 TYGWSK------YGQLGHGDFEDHLVPHKVE-----ALKDSSTSQISGGWRHTMALTSDG 294
Query: 264 YKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTG 308
KL+ WG + G +G G D +PA V +P EE K ++ G
Sbjct: 295 -KLYGWGWNKFGQVGAGDNADHCSPAQVNFP---EEQKVAQVACG 335
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 113/233 (48%), Gaps = 31/233 (13%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV V+ G+ H VAL++ +++C +WG +GQLG GD E RL P +I F D+
Sbjct: 16 VVLVSAGASHSVALLAG-------NVLC-TWGRGEDGQLGHGDAEDRLVPTVISGF--DA 65
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P + V CG+ HT + E +++G G+ G+LGHG + P+ VK L
Sbjct: 66 P-GITSVICGADHTTAYSED-------EHQVYSWGWGDFGRLGHGNSTDVFTPQPVKAL- 116
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + + CG H V+ AG+V SWG + N L D++ P I
Sbjct: 117 QGIKIKQLACGDSHCLAVTMAGEVLSWGRNQ------NGQLGLGTTEDSLLPQTIQAFEG 170
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K +A GA HT VT+DG ++ WG GR G LG G D F P V
Sbjct: 171 ISVKM-----IAAGAEHTAAVTEDG-DIYGWGWGRYGNLGLGDRNDRFVPEKV 217
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 109/261 (41%), Gaps = 40/261 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+I + G LA+ AG + WG N L +TE S P + F G +V
Sbjct: 120 KIKQLACGDSHCLAVTMAGEVLSWGRNQNGQLGLGTTE------DSLLPQTIQAFEGISV 173
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+A G+EH A+ ED Y WG G LGLGDR R P+ + + D
Sbjct: 174 KMIAAGAEHTAAVT--------EDGDIYGWGWGRYGNLGLGDRNDRFVPEKVSSVEGDK- 224
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V CG HT ++ +T+G + GQLGHG + LVP +V+ L
Sbjct: 225 --MVLVACGWRHTITVSS--------SGSLYTYGWSKYGQLGHGDFEDHLVPHKVEALKD 274
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ G HT ++S G ++ WG K + + D SP ++
Sbjct: 275 SS-TSQISGGWRHTMALTSDGKLYGWGWNK------FGQVGAGDNADHCSPAQVNF---- 323
Query: 240 GPKFQDPVQVACGAAHTVLVT 260
P+ Q QVACG HT+ T
Sbjct: 324 -PEEQKVAQVACGWRHTLAFT 343
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDA 227
A + E P V LVS G H+ + + + +WG + + L +A D
Sbjct: 3 AALSAVADEAPPAVVLVSA--GASHSVALLAGNVLCTWGRGE------DGQLGHGDAEDR 54
Query: 228 ISPILISGNGPHGPKFQDP--VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ P +ISG F P V CGA HT ++D ++++SWG G G LG G + D
Sbjct: 55 LVPTVISG-------FDAPGITSVICGADHTTAYSEDEHQVYSWGWGDFGRLGHGNSTDV 107
Query: 286 FAPAIV 291
F P V
Sbjct: 108 FTPQPV 113
>gi|66810824|ref|XP_639119.1| regulator of chromosome condensation domain-containing protein
[Dictyostelium discoideum AX4]
gi|60467743|gb|EAL65761.1| regulator of chromosome condensation domain-containing protein
[Dictyostelium discoideum AX4]
Length = 2083
Score = 104 bits (259), Expect = 9e-20, Method: Composition-based stats.
Identities = 111/433 (25%), Positives = 178/433 (41%), Gaps = 93/433 (21%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-------WDFH 55
+I ++ AG ++ + +G L+ +G D G S VS P+ +
Sbjct: 1327 KIQAIAAGFAHTIVLKKSGELYSFG---YGDQGQLGHGSFVSKSIPTRIELNTIVGIQHG 1383
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G + ++ACG H V GE Y SWG GQLG G+ ES RP++IE
Sbjct: 1384 GGKITQIACGFGHSVICSDNGEVY--------SWGLGKQGQLGHGNYESIARPRLIEALK 1435
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V +++CG F+T T K +++GLGE+ +LGHG+ ++ P V
Sbjct: 1436 -----GVTKISCGHFYTMATTDLKN--------VYSWGLGEHMKLGHGSDKNEATPRVVD 1482
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG------LGLCP-------------- 215
Q + + CGL HT ++ GD+ + + + L P
Sbjct: 1483 FFIQK-NVSKIVCGLNHTITLTYPGDLNNNSLSNDDDVNDFIDLAPSTSNSSSSSSLTND 1541
Query: 216 -----NASLTRNEAGDAISPILISGNGPHG----------PKFQDP-------------V 247
+ L NE +SPI G G HG P F P +
Sbjct: 1542 NNNGRSGRLGLNE-NSQVSPIYACGAGEHGKLGLGGDLKSPFFDKPIPTAIKGVNALNLI 1600
Query: 248 QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTE-EFKQDELN 306
++CG T ++T +G L+ WG G G +G GKT D + P + PLT+ + Q L
Sbjct: 1601 DISCGTDFTAMITSNG-ALYVWGYGNFGQIGNGKTDDAWVPIRI---PLTDSKANQSSLQ 1656
Query: 307 TGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERY--ASILHGSIFGKPFAA 364
+ D++ + EG E+ + +L +K E Y A++++ I G P +
Sbjct: 1657 S---DNKKQRYSQEGLEDILRSNVHSYRPFHIL-NKAKQFENYDIAAVIY-DILGDPIST 1711
Query: 365 EQDIPISLKDMGF 377
+ +SL+ F
Sbjct: 1712 LEYRLLSLEKKNF 1724
Score = 88.6 bits (218), Expect = 6e-15, Method: Composition-based stats.
Identities = 66/234 (28%), Positives = 111/234 (47%), Gaps = 25/234 (10%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR--PKIIETFNQD 117
+KV+CG +HV + +GE ++WG N +GQLG G +++ PK +E F
Sbjct: 1221 IKVSCGWDHVALISESGEL--------FTWGKNQSGQLGHGLDIGKIQTTPKRLEFFRGK 1272
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
SP + V CG H+ + + + +++G + GQLGHGT + ++ E
Sbjct: 1273 SP--IIMVECGGEHSICVDS--------DYVVYSWGQDKFGQLGHGTKSVSQNRPKIIED 1322
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ ++ G HT V+ +G+++S+G G + S I I G
Sbjct: 1323 ISGQKIQAIAAGFAHTIVLKKSGELYSFGYGDQ-GQLGHGSFVSKSIPTRIELNTIVGIQ 1381
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K Q+ACG H+V+ +D+G +++SWG G+ G LG G P ++
Sbjct: 1382 HGGGKI---TQIACGFGHSVICSDNG-EVYSWGLGKQGQLGHGNYESIARPRLI 1431
>gi|356512860|ref|XP_003525133.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine
max]
Length = 437
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 118/249 (47%), Gaps = 37/249 (14%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES 104
S P + F + VA G+EH VA+ G Y WG G LGLGDR
Sbjct: 159 SLLPQKIQIFEEIPIKMVAAGAEHSVAITKDGN--------LYGWGWGRYGNLGLGDRND 210
Query: 105 RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
RL P+ + T + D + V CG HT ++ +T G G+ GQLGHG
Sbjct: 211 RLLPEKV-TVDGDK---MAMVACGWRHTICVSS--------SGGLYTNGWGKYGQLGHGD 258
Query: 165 TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRN 222
+ LVP +V+ L ++ V G H+ ++S+G + WG K +G+ N
Sbjct: 259 FEDHLVPRKVQALSDK-FISQVSGGWRHSMALTSSGQLLGWGWNKFGQIGVGNNF----- 312
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
D SP+ + N PH K Q ++CG HT+ VT+ ++SWGRG +G LG G+T
Sbjct: 313 ---DCCSPMQV--NFPHDQKVQ---MISCGWRHTIAVTER-ENVYSWGRGANGQLGNGET 363
Query: 283 IDFFAPAIV 291
ID P I+
Sbjct: 364 IDRNVPTII 372
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 114/236 (48%), Gaps = 37/236 (15%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN-QD 117
V+ V+ G+ H VAL+S ++VC SWG +GQLG GD + RL P + + QD
Sbjct: 16 VLLVSAGASHSVALLSG-------NVVC-SWGRGEDGQLGHGDTDDRLFPTKLSALDGQD 67
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ VTCG+ HT + R +++G G+ G+LGHG L+P +K L
Sbjct: 68 ----IICVTCGADHTMARSESGRD-------VYSWGWGDFGRLGHGDHSDLLIPHPIKAL 116
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
Q + + + CG H V+ V SWG + N L A D++ P I
Sbjct: 117 -QGLMIQQIACGDSHCLAVTMDSQVLSWGRNQ------NGELGLGTAEDSLLPQKIQ--- 166
Query: 238 PHGPKFQD-PVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F++ P++ VA GA H+V +T DG L+ WG GR G LG G D P V
Sbjct: 167 ----IFEEIPIKMVAAGAEHSVAITKDG-NLYGWGWGRYGNLGLGDRNDRLLPEKV 217
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 132/300 (44%), Gaps = 41/300 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V AG S+A+ + + WG + G P+ + G ++ V
Sbjct: 15 RVLLVSAGASHSVALLSGNVVCSWGR---GEDGQLGHGDTDDRLFPTKLSALDGQDIICV 71
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
CG++H +A +G YSWG + G+LG GD L P I+ +
Sbjct: 72 TCGADHTMARSESGRD-------VYSWGWGDFGRLGHGDHSDLLIPHPIKALQG---LMI 121
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG H +T ++S ++G +NG+LG GT + +L+P+++ ++ + +
Sbjct: 122 QQIACGDSHCLAVT--------MDSQVLSWGRNQNGELGLGTAEDSLLPQKI-QIFEEIP 172
Query: 183 LVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ V G H+ ++ G++ W WG LGL + D + P ++ +G
Sbjct: 173 IKMVAAGAEHSVAITKDGNLYGWGWGRYGNLGL--------GDRNDRLLPEKVTVDG--- 221
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEF 300
VACG HT+ V+ G L++ G G+ G LG G D P V L+++F
Sbjct: 222 ---DKMAMVACGWRHTICVSSSG-GLYTNGWGKYGQLGHGDFEDHLVPRKV--QALSDKF 275
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 82/177 (46%), Gaps = 28/177 (15%)
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P V V+ G+ H+ L + ++ ++G GE+GQLGHG T L P ++ L
Sbjct: 13 PRRVLLVSAGASHSVAL--------LSGNVVCSWGRGEDGQLGHGDTDDRLFPTKLSALD 64
Query: 179 QYVYLVSVDCGLFHTSVVSSAG-DVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++ V CG HT S +G DV+SWG R GD S +LI
Sbjct: 65 GQ-DIICVTCGADHTMARSESGRDVYSWGW---------GDFGRLGHGDH-SDLLI---- 109
Query: 238 PHGPKFQDPV---QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
PH K + Q+ACG +H + VT D L SWGR ++G LG G D P +
Sbjct: 110 PHPIKALQGLMIQQIACGDSHCLAVTMDSQVL-SWGRNQNGELGLGTAEDSLLPQKI 165
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I V G S+A+ ++G L WG F S P V H V ++
Sbjct: 276 ISQVSGGWRHSMALTSSGQLLGWGWNKFGQIGVGNNFDCCS---PMQVNFPHDQKVQMIS 332
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
CG H +A+ E YSWG NGQLG G+ R P IIE F+ D
Sbjct: 333 CGWRHTIAVT--------ERENVYSWGRGANGQLGNGETIDRNVPTIIEAFSVD 378
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
V +V P+ V LVS G H+ + S V SWG + + L + D +
Sbjct: 5 VMSEVAAPPRRVLLVSA--GASHSVALLSGNVVCSWGRGE------DGQLGHGDTDDRLF 56
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
P +S QD + V CGA HT+ ++ G ++SWG G G LG G D P
Sbjct: 57 PTKLSA-----LDGQDIICVTCGADHTMARSESGRDVYSWGWGDFGRLGHGDHSDLLIP 110
>gi|390359737|ref|XP_003729552.1| PREDICTED: E3 ubiquitin-protein ligase HERC2, partial
[Strongylocentrotus purpuratus]
Length = 4064
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 135/290 (46%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG D G S ++ P + + +ACG
Sbjct: 2297 AVHSGGRHAMALTVDGKVFSWGEG---DDGKLGHLSRMNCEKPRLLEALKTKRIRDIACG 2353
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE Y+WG G+LG GD ++LRPK+++ V +V
Sbjct: 2354 SSHSAAVTSSGE--------LYTWGLGEYGRLGHGDSTTQLRPKLVKALVGKR---VIQV 2402
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS LT E M +++G G+ G+LG G ++ VP V+ L ++
Sbjct: 2403 ACGSRDAQTLTLTD------EGMVYSWGDGDFGKLGRGGSEGCSVPHNVERL-NGQGVIQ 2455
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ AG VW+WG KG LG ++ + + + + G
Sbjct: 2456 IECGAQFSLALTKAGQVWTWG--KGDYFRLGHGTDSHVRKPQVAE-------------GL 2500
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + + VA GA H + VTD G ++++WG G G G T PA+V
Sbjct: 2501 KGKKIIHVAVGALHCLAVTDTG-QVFAWGDNDHGQQGDGSTTVNKKPALV 2549
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 129/290 (44%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + P + G V+ +ACG
Sbjct: 3272 AVNSGGKHALALSVEGEVYSWGEG---EDGKLGHGNRTQCDRPRVIESLRGKEVIDIACG 3328
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + S+GE Y+WG G+LG GD E +LRPK+ + + V +V
Sbjct: 3329 GAHSACVTSSGE--------LYTWGKGRYGRLGHGDSEDQLRPKMADALKG---YRVIDV 3377
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS + L N W++G G+ G+LG G + VP++V L + +
Sbjct: 3378 ACGSGDSQTLCISDDDN------VWSWGDGDYGKLGRGGSDGCKVPQKVDAL-SSIGVCK 3430
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + + R A+ G
Sbjct: 3431 VECGSQFSIALTKSGCVYTWG--KGDYHRLGHGSDDHVRRPRKVAAL----------QGK 3478
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V +D G ++++WG G LG G T P IV
Sbjct: 3479 KI---ISIATGSLHCVACSDQG-EVYTWGDNDEGQLGDGTTNAIQRPRIV 3524
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 128/294 (43%), Gaps = 54/294 (18%)
Query: 9 AGGMMSLAIDNA-GALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHTVVKVAC 64
AGG SL + A G ++ G T G L SS P V + V KVA
Sbjct: 2245 AGGSKSLFVVTAEGKVYACGE------GTNGRLGLGSSQNVDIPKQVNGLSQYVVKKVAV 2298
Query: 65 --GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
G H +AL G+ + SWG ++G+LG R + +P+++E +
Sbjct: 2299 HSGGRHAMALTVDGKVF--------SWGEGDDGKLGHLSRMNCEKPRLLEALKTKR---I 2347
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CGS H+A +T +T+GLGE G+LGHG + + L P+ VK L
Sbjct: 2348 RDIACGSSHSAAVTS--------SGELYTWGLGEYGRLGHGDSTTQLRPKLVKALVGK-R 2398
Query: 183 LVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGN 236
++ V CG T ++ G V+SWG + G G S+ N + N
Sbjct: 2399 VIQVACGSRDAQTLTLTDEGMVYSWGDGDFGKLGRGGSEGCSVPHN---------VERLN 2449
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
G Q +Q+ CGA ++ +T G ++W+WG+G LG G P +
Sbjct: 2450 G------QGVIQIECGAQFSLALTKAG-QVWTWGKGDYFRLGHGTDSHVRKPQV 2496
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 110/255 (43%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V G V++V
Sbjct: 2346 RIRDIACGSSHSAAVTSSGELYTWG---LGEYGRLGHGDSTTQLRPKLVKALVGKRVIQV 2402
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L T E +V YSWG + G+LG G E P +E N V
Sbjct: 2403 ACGSRDAQTL-----TLTDEGMV-YSWGDGDFGKLGRGGSEGCSVPHNVERLNGQ---GV 2453
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT WT+G G+ +LGHGT P QV E +
Sbjct: 2454 IQIECGAQFSLALTK--------AGQVWTWGKGDYFRLGHGTDSHVRKP-QVAEGLKGKK 2504
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
++ V G H V+ G V++WG + G + S T N+ P L+ G G +
Sbjct: 2505 IIHVAVGALHCLAVTDTGQVFAWG-DNDHGQQGDGSTTVNK-----KPALV--QGLEGVR 2556
Query: 243 FQDPVQVACGAAHTV 257
+VACG++H+
Sbjct: 2557 I---TRVACGSSHST 2568
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 34/211 (16%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC---GSFHTALLTHRKRPND 143
+ WG N+ QLG G R S+++ ++ F + +V C GS ++T
Sbjct: 2209 FVWGLNDKDQLG-GPRGSKIKTPVLNEF-----LSSLKVVCCAGGSKSLFVVT------- 2255
Query: 144 MLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVDCGLFHTSVVSSAGDV 202
E + G G NG+LG G++Q+ +P+QV L QYV V+V G H ++ G V
Sbjct: 2256 -AEGKVYACGEGTNGRLGLGSSQNVDIPKQVNGLSQYVVKKVAVHSGGRHAMALTVDGKV 2314
Query: 203 WSWGM--EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT 260
+SWG + LG + + +A+ I +ACG++H+ VT
Sbjct: 2315 FSWGEGDDGKLGHLSRMNCEKPRLLEALKTKRIR-------------DIACGSSHSAAVT 2361
Query: 261 DDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G +L++WG G G LG G + P +V
Sbjct: 2362 SSG-ELYTWGLGEYGRLGHGDSTTQLRPKLV 2391
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 26/206 (12%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P IE+ P + G T +
Sbjct: 3184 YGWGHNHRGQLGGIEGAKVKVPTAIESLTSLRPIQIV----GGEQTLFAV-------TAD 3232
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G +G+LG G T S P ++ + Q+V++ V+V+ G H +S G+V+S
Sbjct: 3233 GKLYATGYGASGRLGIGGTDSVSTPTLLESI-QHVHIKKVAVNSGGKHALALSVEGEVYS 3291
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG E G + + T+ + I + + ++ + +ACG AH+ VT G
Sbjct: 3292 WG-EGEDGKLGHGNRTQCDRPRVIESL----------RGKEVIDIACGGAHSACVTSSG- 3339
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAI 290
+L++WG+GR G LG G + D P +
Sbjct: 3340 ELYTWGKGRYGRLGHGDSEDQLRPKM 3365
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 107/258 (41%), Gaps = 38/258 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + GG S + ++G L+ WG G P G+ V+ V
Sbjct: 3321 EVIDIACGGAHSACVTSSGELYTWGKGRY---GRLGHGDSEDQLRPKMADALKGYRVIDV 3377
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L + +D +SWG + G+LG G + P+ ++ S V
Sbjct: 3378 ACGSGDSQTLCIS------DDDNVWSWGDGDYGKLGRGGSDGCKVPQKVDAL---SSIGV 3428
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMC-WTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+V CGS + LT +S C +T+G G+ +LGHG+ P +V L Q
Sbjct: 3429 CKVECGSQFSIALT---------KSGCVYTWGKGDYHRLGHGSDDHVRRPRKVAAL-QGK 3478
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
++S+ G H S G+V++WG E LG ++ R A+ I+
Sbjct: 3479 KIISIATGSLHCVACSDQGEVYTWGDNDEGQLGDGTTNAIQRPRIVTALQDKKIT----- 3533
Query: 240 GPKFQDPVQVACGAAHTV 257
VACG+AHTV
Sbjct: 3534 --------NVACGSAHTV 3543
>gi|357163608|ref|XP_003579788.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like
[Brachypodium distachyon]
Length = 449
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 116/249 (46%), Gaps = 32/249 (12%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
FTP PV G + ++ACG H +A+ GE SWG N NGQLGLG E
Sbjct: 115 FTPQPVRALQGIKIKQMACGDSHCLAVTMGGEVQ--------SWGRNQNGQLGLGTTEDS 166
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
L P+ I+ F V + G+ HTA +T + + +G G G LG G
Sbjct: 167 LLPQKIQAFEGI---CVKMIAAGAEHTAAVTE--------DGDLYGWGWGRYGNLGLGDR 215
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
VPE+V L + +V + CG HT VSS+G ++++G K L +
Sbjct: 216 NDRFVPEKVS-LVEGEKMVLIACGWRHTITVSSSGILYTYGWSK------YGQLGHGDFE 268
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
D + P + K Q++ G HT+ +T DG KL+ WG + G +G G ++D
Sbjct: 269 DHLFPHKV-----EALKDSSTSQISGGWRHTMALTSDG-KLYGWGWNKFGQVGAGDSVDH 322
Query: 286 FAPAIVLWP 294
+P V++P
Sbjct: 323 CSPVQVMFP 331
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 110/235 (46%), Gaps = 35/235 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV V+ G+ H VAL+ E V SWG +GQLG GD E RL P +I F D+
Sbjct: 23 VVLVSAGASHSVALL--------EGNVLCSWGRGEDGQLGHGDAEDRLVPTVISGF--DA 72
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P + V CG+ HT + E +++G G+ G+LGHG + P+ V+ L
Sbjct: 73 P-RITSVICGADHTTAYSEE-------EQQVYSWGWGDFGRLGHGNSSDVFTPQPVRAL- 123
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + + CG H V+ G+V SWG + N L D++ P I
Sbjct: 124 QGIKIKQMACGDSHCLAVTMGGEVQSWGRNQ------NGQLGLGTTEDSLLPQKIQ---- 173
Query: 239 HGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ +A GA HT VT+DG L+ WG GR G LG G D F P V
Sbjct: 174 ---AFEGICVKMIAAGAEHTAAVTEDG-DLYGWGWGRYGNLGLGDRNDRFVPEKV 224
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 127/295 (43%), Gaps = 47/295 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+I + G LA+ G + WG N L +TE S P + F G V
Sbjct: 127 KIKQMACGDSHCLAVTMGGEVQSWGRNQNGQLGLGTTE------DSLLPQKIQAFEGICV 180
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+A G+EH A+ ED Y WG G LGLGDR R P+ + +
Sbjct: 181 KMIAAGAEHTAAVT--------EDGDLYGWGWGRYGNLGLGDRNDRFVPEKVSLVEGEK- 231
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ + CG HT ++ + +T+G + GQLGHG + L P +V+ L
Sbjct: 232 --MVLIACGWRHTITVSS--------SGILYTYGWSKYGQLGHGDFEDHLFPHKVEALKD 281
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI---SPILISGN 236
+ G HT ++S G ++ WG K + AGD++ SP+ +
Sbjct: 282 S-STSQISGGWRHTMALTSDGKLYGWGWNK---------FGQVGAGDSVDHCSPVQVMF- 330
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P Q QVACG HT+ T+ +++WGRG SG LG G+ +D P ++
Sbjct: 331 ----PAEQKVAQVACGWRHTLAYTEK-KNVFAWGRGTSGQLGHGEIVDRNKPLMI 380
>gi|390352695|ref|XP_003727958.1| PREDICTED: uncharacterized protein LOC100887866 [Strongylocentrotus
purpuratus]
Length = 1139
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 117/268 (43%), Gaps = 33/268 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGH--TVVKVA 63
+V A G AI G ++ WG SL P V H H V VA
Sbjct: 775 NVLACGQDHAAIVANGDVYTWGRAHEGRLGQGDIMSLDGRAPPLRVETLHMHGIHVRAVA 834
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG EH +A+ G+ YSWG+++ GQLG+GDR RP +E S
Sbjct: 835 CGKEHTMAVTQEGK--------LYSWGSSSYGQLGVGDRNVHSRPVAVEAL---SGQRCL 883
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
V CG HT +LT +R W+FG G +GQLGHG + ++P+ V +L + +
Sbjct: 884 SVACGQLHTLVLTQDQR--------LWSFGWGVHGQLGHGDVEDQILPKLVNQLSK-CAI 934
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
V + G H+ +++ G VW +G G S+ G + P+ + H
Sbjct: 935 VGISAGYAHSGALTNDGQVWMFG-SSSFGQLGTGSI-----GKSTVPVRLKALSSHHVSI 988
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGR 271
+ CG + +T + K+++WG+
Sbjct: 989 -----LTCGYYSNIAITSNPQKVYTWGK 1011
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 29/173 (16%)
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS---ALVPEQVKELPQY- 180
+ CG H A++ + +T+G G+LG G S P +V+ L +
Sbjct: 777 LACGQDHAAIVANGD---------VYTWGRAHEGRLGQGDIMSLDGRAPPLRVETLHMHG 827
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGP 238
+++ +V CG HT V+ G ++SWG LG+ +R A +A+S
Sbjct: 828 IHVRAVACGKEHTMAVTQEGKLYSWGSSSYGQLGVGDRNVHSRPVAVEALSG-------- 879
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
Q + VACG HT+++T D +LWS+G G G LG G D P +V
Sbjct: 880 -----QRCLSVACGQLHTLVLTQD-QRLWSFGWGVHGQLGHGDVEDQILPKLV 926
>gi|145512133|ref|XP_001441983.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124409255|emb|CAK74586.1| unnamed protein product [Paramecium tetraurelia]
Length = 2041
Score = 103 bits (256), Expect = 2e-19, Method: Composition-based stats.
Identities = 75/278 (26%), Positives = 136/278 (48%), Gaps = 32/278 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+ + G ++A+ GA+++WG + G + TP+ + D G ++
Sbjct: 300 EFVKIVCGHHHTMALTEEGAVFIWG---MGSQGCLGNGRVDDLETPTQI-DISGLFFNEI 355
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G+ H +AL + Y WG NN GQLG+G++E++L PK + F++
Sbjct: 356 AAGAYHSLALAKNNQVY--------GWGVNNRGQLGIGNKENQLLPKQLTFFDRKKIQCQ 407
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG H+A +T K +T+G G+ +LGHG + P+++ E+ Q VY
Sbjct: 408 Y-LYCGDQHSACITTNKE--------LYTWGNGDYYRLGHGMLLDEMEPKKI-EILQDVY 457
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
++ V G H+ +++ G V++WG K L + + D P + G
Sbjct: 458 VLDVALGTIHSLCITNEGFVYAWGSSKDSVL----GMPTQQYKDQTLPQRV---GLMSQS 510
Query: 243 FQDP--VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
F+D QVA G +H++ ++++G+ L+ WG ++ +LG
Sbjct: 511 FRDASFYQVAAGTSHSLSLSENGH-LYVWGSNKNSLLG 547
Score = 57.0 bits (136), Expect = 2e-05, Method: Composition-based stats.
Identities = 58/247 (23%), Positives = 92/247 (37%), Gaps = 51/247 (20%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES 104
SFTP + F + ++C H +A+ + G Y WG+N QLGLG +
Sbjct: 676 SFTPIEIVYFRNTIIRYISCQYNHCIAVTAKGNA--------YCWGSNQYNQLGLGFQSD 727
Query: 105 RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
+ I+ + + +T F +ALLT + W+FG E G LGH
Sbjct: 728 HVFTPILLEGAIEQKVIIMAITGEKF-SALLTD--------QGEVWSFGTSEFGVLGHEL 778
Query: 165 TQSALV--PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-------------EK 209
++ P + ++P + L + +F + +W+WG E+
Sbjct: 779 KNFYVIMEPRMINDIPSMINLACSNQTMF---AIDQKQQLWAWGNNQFGQLGISLQRDEE 835
Query: 210 GLGLCPN--------------ASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
+ L N SL E P S G F D QV+CG H
Sbjct: 836 EINLQTNKQVSSEFLEWKAQLKSLKNPERYIVYQPDKPSTRSITGEAFVD--QVSCGLYH 893
Query: 256 TVLVTDD 262
T ++T +
Sbjct: 894 TCIITTN 900
Score = 45.4 bits (106), Expect = 0.048, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 38/174 (21%)
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
++ CG HT LT E + +G+G G LG+G P Q+ ++
Sbjct: 303 KIVCGHHHTMALTE--------EGAVFIWGMGSQGCLGNGRVDDLETPTQID--ISGLFF 352
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ G +H+ ++ V+ WG+ G+G N L P
Sbjct: 353 NEIAAGAYHSLALAKNNQVYGWGVNNRGQLGIGNKENQLL------------------PK 394
Query: 240 GPKFQDPVQVAC-----GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
F D ++ C G H+ +T + +L++WG G LG G +D P
Sbjct: 395 QLTFFDRKKIQCQYLYCGDQHSACITTNK-ELYTWGNGDYYRLGHGMLLDEMEP 447
Score = 40.8 bits (94), Expect = 1.4, Method: Composition-based stats.
Identities = 51/200 (25%), Positives = 81/200 (40%), Gaps = 38/200 (19%)
Query: 97 LGLGDRESRLRPKIIETF--NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGL 154
LG GD ++ P E F + S E+ ++ +LT RP E + +G
Sbjct: 173 LGTGDEANKDEPNAFEKFFMMEKSKDGKTEINI-CYYYQMLTQESRP----EYIAIVWGN 227
Query: 155 GENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LG 212
NG+LG +S E K+ +F+ + S D S M++
Sbjct: 228 PANGRLG--APKSKFPNESDKQT------------IFNNNNPSQM-DFTSRQMQQPSRTQ 272
Query: 213 LCPNASLTRNEA----GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
N+ N+A D I PI + Q+ V++ CG HT+ +T++G ++
Sbjct: 273 QVQNSQYNLNQAEPNNSDFIQPIALK---------QEFVKIVCGHHHTMALTEEG-AVFI 322
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G G LG G+ D P
Sbjct: 323 WGMGSQGCLGNGRVDDLETP 342
>gi|405965978|gb|EKC31310.1| Putative E3 ubiquitin-protein ligase HERC2 [Crassostrea gigas]
Length = 5345
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 133/291 (45%), Gaps = 41/291 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG SLA+ G ++ WG D G FS + P + V +ACG
Sbjct: 3556 AVHSGGRHSLALTTDGKVFSWGE---GDDGKLGHFSRWNCDKPRLIEALKSKRVRDIACG 3612
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S G+ Y+WG G+LG GD ++L+PK ++ + V +V
Sbjct: 3613 SSHSAAITSNGD--------LYTWGLGEYGRLGHGDNTTQLKPKQVKALAHER---VVQV 3661
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E +++G G+ G+LG G ++ VP +V L +
Sbjct: 3662 ACGSRDAQTLALTD------EGKVYSWGDGDFGKLGRGGSEGCNVPHEVDRLRDQ-KVCQ 3714
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ +G VW+WG KG LG +A + + P ++ G
Sbjct: 3715 IECGAQFSLALTKSGQVWTWG--KGDYFRLGHGTDAHVRK--------PQIV-----EGL 3759
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
K + V VA GA H + VTD G ++++WG G G G T PA+V+
Sbjct: 3760 KGKKIVHVAVGALHCLAVTDSG-QVFAWGDNDHGQQGNGTTTVNRKPALVV 3809
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 127/290 (43%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ G ++ WG + G + P + G VV +A G
Sbjct: 4552 AVNSGGKHCLALSAEGEVYSWGE---GEDGKLGHGNRSPCDRPRVIDSLRGKEVVDIAAG 4608
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + + GE Y+WG G+LG GD E + RPK++E + V ++
Sbjct: 4609 GAHSACITANGE--------LYTWGKGRYGRLGHGDSEDQPRPKLVEALKS---YRVVDM 4657
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + VP +++ L Q ++
Sbjct: 4658 ACGSGDAQTLCITDDDN------VWSWGDGDYGKLGRGGSDGCKVPMKIETL-QGQGVMK 4710
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + + R A+
Sbjct: 4711 VECGSQFSVALTKSGSVYTWG--KGDYHRLGHGSDDHVRRPRKVSAL------------- 4755
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + + VACG+ H V TD G +++SWG G LG G T P +V
Sbjct: 4756 QNKKVIDVACGSLHCVACTDTG-EVFSWGDNDEGQLGDGTTNAIQRPRLV 4804
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 42/260 (16%)
Query: 39 GFSLVSSFTPSPVWDFHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQ 96
G + + P + + + KVA G H +AL + G+ + SWG ++G+
Sbjct: 3532 GITTGTVSVPRQITSLSQYVIKKVAVHSGGRHSLALTTDGKVF--------SWGEGDDGK 3583
Query: 97 LGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGE 156
LG R + +P++IE V ++ CGS H+A +T D+ +T+GLGE
Sbjct: 3584 LGHFSRWNCDKPRLIEALKSKR---VRDIACGSSHSAAITSN---GDL-----YTWGLGE 3632
Query: 157 NGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLC 214
G+LGHG + L P+QVK L + +V V CG T ++ G V+SWG + G
Sbjct: 3633 YGRLGHGDNTTQLKPKQVKALA-HERVVQVACGSRDAQTLALTDEGKVYSWG-DGDFG-- 3688
Query: 215 PNASLTRNEAGDAISPILISGNGPHGP---KFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
L R + N PH + Q Q+ CGA ++ +T G ++W+WG+
Sbjct: 3689 ---KLGRGGSEGC--------NVPHEVDRLRDQKVCQIECGAQFSLALTKSG-QVWTWGK 3736
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G LG G P IV
Sbjct: 3737 GDYFRLGHGTDAHVRKPQIV 3756
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 121/281 (43%), Gaps = 33/281 (11%)
Query: 11 GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVV 70
G + + + G ++ WGN D G + P+ + G V K+ CGS + V
Sbjct: 628 GKHYMGLTSDGEVFSWGN---GDGGKLGHGDYQNHEEPALITGLSGKQVAKICCGSSYSV 684
Query: 71 ALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF 130
AL S GE YSWG N G+LG G E + P +++ F + +V CGS
Sbjct: 685 ALTSNGEV--------YSWGKGNFGRLGHGSSEDQTTPMLLKFFKGHR---IVDVACGSG 733
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
L +++G G+ G+LG G P+ +++L +V V CG
Sbjct: 734 DAQTLAVTD------SGAVYSWGDGDYGKLGRGGNDGCKTPKVIEKL-MGQDVVRVYCGN 786
Query: 191 FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
+ ++ +G V++WG KG N L A P I K +D +A
Sbjct: 787 QFSMALTKSGAVYTWG--KG----DNYRLGHGTEDHARHPKQIEALS--SKKVKD---IA 835
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ H + +T+DG +L+ WGR G LG +F P ++
Sbjct: 836 IGSLHCMAITEDG-ELYGWGRNEQGQLGNPSISNFTEPTLI 875
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 109/263 (41%), Gaps = 48/263 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV----SSFTPSP--VWDFHG 56
++ + AGG S I G L+ WG +G + + S P P V
Sbjct: 4601 EVVDIAAGGAHSACITANGELYTWG---------KGRYGRLGHGDSEDQPRPKLVEALKS 4651
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+ VV +ACGS L +D +SWG + G+LG G + P IET
Sbjct: 4652 YRVVDMACGSGDAQTLCIT------DDDNVWSWGDGDYGKLGRGGSDGCKVPMKIETLQG 4705
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V +V CGS + LT +T+G G+ +LGHG+ P +V
Sbjct: 4706 Q---GVMKVECGSQFSVALTK--------SGSVYTWGKGDYHRLGHGSDDHVRRPRKVSA 4754
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILIS 234
L Q ++ V CG H + G+V+SWG E LG ++ R P L++
Sbjct: 4755 L-QNKKVIDVACGSLHCVACTDTGEVFSWGDNDEGQLGDGTTNAIQR--------PRLVA 4805
Query: 235 GNGPHGPKFQDPVQVACGAAHTV 257
G K +VACG+AH++
Sbjct: 4806 --SLLGKKIN---RVACGSAHSL 4823
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 109/226 (48%), Gaps = 37/226 (16%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQDS 118
V++ GS+ + + G+ Y + G NG+LGLG + P+ I + +Q
Sbjct: 3500 VQIVGGSKSLFCVTQEGKVY--------ACGEATNGRLGLGITTGTVSVPRQITSLSQYV 3551
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + G AL T K +++G G++G+LGH + + P ++ L
Sbjct: 3552 IKKVAVHSGGRHSLALTTDGK---------VFSWGEGDDGKLGHFSRWNCDKPRLIEAL- 3601
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGN 236
+ + + CG H++ ++S GD+++WG+ E G LG N + + + A++
Sbjct: 3602 KSKRVRDIACGSSHSAAITSNGDLYTWGLGEYGRLGHGDNTTQLKPKQVKALA------- 3654
Query: 237 GPHGPKFQDPVQVACGA--AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ VQVACG+ A T+ +TD+G K++SWG G G LG G
Sbjct: 3655 ------HERVVQVACGSRDAQTLALTDEG-KVYSWGDGDFGKLGRG 3693
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 23/192 (11%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ ++GA++ WG+ D G TP + G VV+V CG++
Sbjct: 732 SGDAQTLAVTDSGAVYSWGD---GDYGKLGRGGNDGCKTPKVIEKLMGQDVVRVYCGNQF 788
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL +G Y+WG +N +LG G + PK IE S V ++ G
Sbjct: 789 SMALTKSG--------AVYTWGKGDNYRLGHGTEDHARHPKQIEAL---SSKKVKDIAIG 837
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
S H +T + + +G E GQLG+ + + P + + + ++ V C
Sbjct: 838 SLHCMAITE--------DGELYGWGRNEQGQLGNPSISNFTEPTLIGGM-EGKNIIGVAC 888
Query: 189 GLFHTSVVSSAG 200
G T +S G
Sbjct: 889 GPTQTFAWTSGG 900
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++C ++ G SLA+ +G +W WG D G + P V G +V V
Sbjct: 3711 KVCQIECGAQFSLALTKSGQVWTWGK---GDYFRLGHGTDAHVRKPQIVEGLKGKKIVHV 3767
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G+ H +A+ +G+ ++WG N++GQ G G +P ++ + +
Sbjct: 3768 AVGALHCLAVTDSGQV--------FAWGDNDHGQQGNGTTTVNRKPALVVL----EGYKI 3815
Query: 123 YEVTCGSFHT 132
+V CGS H+
Sbjct: 3816 SKVACGSSHS 3825
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 96/209 (45%), Gaps = 30/209 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
+ WG N+ GQLG D +P E P + G T E
Sbjct: 4464 WGWGHNHRGQLGGVDGAKVKQPVSCEALAVTRPIQL----VGGEQTLFAV-------TAE 4512
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T+S P Q++ + Q+V++ ++V+ G H +S+ G+V+S
Sbjct: 4513 GKVFATGYGAGGRLGVGGTESVSHPTQLESI-QHVFIKKLAVNSGGKHCLALSAEGEVYS 4571
Query: 205 WGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG E G LG + R D++ + ++ V +A G AH+ +T +
Sbjct: 4572 WGEGEDGKLGHGNRSPCDRPRVIDSL-------------RGKEVVDIAAGGAHSACITAN 4618
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G +L++WG+GR G LG G + D P +V
Sbjct: 4619 G-ELYTWGKGRYGRLGHGDSEDQPRPKLV 4646
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V G S+A+ +GA++ WG D+ G + + P + V +A
Sbjct: 779 VVRVYCGNQFSMALTKSGAVYTWGK---GDNYRLGHGTEDHARHPKQIEALSSKKVKDIA 835
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG 98
GS H +A+ GE Y WG N GQLG
Sbjct: 836 IGSLHCMAITEDGE--------LYGWGRNEQGQLG 862
>gi|222623048|gb|EEE57180.1| hypothetical protein OsJ_07117 [Oryza sativa Japonica Group]
Length = 463
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 112/235 (47%), Gaps = 29/235 (12%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+VV ++ G+ H VAL+S G +VC SWG +GQLG GD E R P ++ D
Sbjct: 21 SVVLISAGASHSVALLSGG-------VVC-SWGRGEDGQLGHGDAEDRPVPTVLTAAFDD 72
Query: 118 SPWAVYEVT-CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+P V V CG+ HT + E +++G G+ G+LGHG + P+ ++
Sbjct: 73 APGGVASVVICGADHTTAYSDE-------ELQLYSWGWGDFGRLGHGNSSDVFNPQPIQA 125
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L Q V + + CG H V+ AG V SWG + N L D++ P I
Sbjct: 126 L-QGVRITQIACGDSHCLAVTVAGHVHSWGRNQ------NGQLGLGNTEDSLLPQKIQAF 178
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G + + +A GA HT VT+DG L+ WG GR G LG G D P V
Sbjct: 179 --EGVRVK---MIAAGAEHTAAVTEDG-DLYGWGWGRYGNLGLGDRDDRLIPEKV 227
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 133/306 (43%), Gaps = 54/306 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+I + G LA+ AG + WG N L +TE S P + F G V
Sbjct: 130 RITQIACGDSHCLAVTVAGHVHSWGRNQNGQLGLGNTE------DSLLPQKIQAFEGVRV 183
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+A G+EH A+ ED Y WG G LGLGDR+ RL P+ + + N
Sbjct: 184 KMIAAGAEHTAAVT--------EDGDLYGWGWGRYGNLGLGDRDDRLIPEKVSSVNGQK- 234
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP- 178
+ V CG HT ++ +T+G + GQLGHG + LVP +++ L
Sbjct: 235 --MVLVACGWRHTITVSS--------SGSIYTYGWSKYGQLGHGDFEDHLVPHKLEALKD 284
Query: 179 ---------QYVYLVSVDCGLFHTS----VVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
+ ++ D G +++ G ++ WG K + NE
Sbjct: 285 TTISQEEAVELIFFFLGDEGFRVGGGIQWALAADGKLYGWGWNK----FGQVGVGDNE-- 338
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
D SP+ ++ P Q VQVACG HT+ +T+ ++SWGRG SG LG G+ +D
Sbjct: 339 DHCSPVQVNF-----PNEQKVVQVACGWRHTLALTE-AKNVFSWGRGTSGQLGHGEIVDR 392
Query: 286 FAPAIV 291
P ++
Sbjct: 393 NIPKMI 398
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N GQ+G+GD E P + N+ V +V CG HT LT K
Sbjct: 322 YGWGWNKFGQVGVGDNEDHCSPVQVNFPNEQK---VVQVACGWRHTLALTEAKN------ 372
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+++G G +GQLGHG +P+ + L
Sbjct: 373 --VFSWGRGTSGQLGHGEIVDRNIPKMIDAL 401
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 172 EQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPI 231
E V E P+ +V + G H+ + S G V SWG + + L +A D P
Sbjct: 12 EAVPEAPER-SVVLISAGASHSVALLSGGVVCSWGRGE------DGQLGHGDAEDRPVPT 64
Query: 232 LISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+++ P V V CGA HT +D+ +L+SWG G G LG G + D F P
Sbjct: 65 VLTAAFDDAPGGVASV-VICGADHTTAYSDEELQLYSWGWGDFGRLGHGNSSDVFNP 120
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV+VACG H +AL A + SWG +GQLG G+ R PK+I+ + D
Sbjct: 354 VVQVACGWRHTLALTEAKNVF--------SWGRGTSGQLGHGEIVDRNIPKMIDALSSD 404
>gi|326511771|dbj|BAJ92030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 442
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 144/336 (42%), Gaps = 76/336 (22%)
Query: 3 QICSVKAGGMMSLAI-DNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
++ SV G ++A D+ L+ WG D G + F P P+ G + +
Sbjct: 74 RVTSVICGADHTIAYSDDEMQLYSWG---WGDFGRLGHGNSSDVFNPQPIVALQGMKIKQ 130
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ACG H + + T+ G+ +SWG N NGQLGLG+ + L P+ I+ F
Sbjct: 131 IACGDSHCLTV-----TFNGQ---VHSWGRNQNGQLGLGNNQDSLLPQKIKAFEGV---C 179
Query: 122 VYEVTCGSFHTALLTH----------------------RKRPND--------MLESMC-- 149
V + G+ HT +T R P M+ C
Sbjct: 180 VKMIAAGAEHTTAITEGGDLYGWGWGRYGNLGLSDRDDRSVPEKVSSVEGEKMVLVACGW 239
Query: 150 ------------WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
+T+G + GQLGHG Q LVP +++ L V + + G HT V+
Sbjct: 240 RHSVSVSSSGALYTYGWSKYGQLGHGDFQDHLVPRKLEALKD-VPISQISGGWRHTMAVA 298
Query: 198 SAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
G ++ WG K +G+ N D SP+ ++ P Q VQVACG H
Sbjct: 299 EDGKLYGWGWNKFGQVGVEDNV--------DHCSPVEVNF-----PDEQKIVQVACGWRH 345
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
T+ +T++ ++SWGRG SG LG G+ ID P ++
Sbjct: 346 TLALTEN-KNIFSWGRGASGQLGHGEIIDRNTPKMI 380
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 106/237 (44%), Gaps = 35/237 (14%)
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+V+ ++ G+ H AL+S +VC SWG +GQLG GD E R P ++ +F
Sbjct: 21 QSVILISAGANHSAALLSG-------QMVC-SWGRGEDGQLGHGDSEDRPVPTVLTSF-- 70
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
D P V V CG+ HT + +D ++ W G G+ G+LGHG + P+ +
Sbjct: 71 DVP-RVTSVICGADHTIAYS-----DDEMQLYSW--GWGDFGRLGHGNSSDVFNPQPIVA 122
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILIS 234
L Q + + + CG H V+ G V SWG + LGL N + A + +
Sbjct: 123 L-QGMKIKQIACGDSHCLTVTFNGQVHSWGRNQNGQLGLGNNQDSLLPQKIKAFEGVCVK 181
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A GA HT +T+ G L+ WG GR G LG D P V
Sbjct: 182 -------------MIAAGAEHTTAITEGG-DLYGWGWGRYGNLGLSDRDDRSVPEKV 224
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 108/244 (44%), Gaps = 35/244 (14%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
P+ + F V V CG++H +A Y +++ YSWG + G+LG G+
Sbjct: 63 VPTVLTSFDVPRVTSVICGADHTIA-------YSDDEMQLYSWGWGDFGRLGHGNSSDVF 115
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P+ I + ++ CG H +T ++G +NGQLG G Q
Sbjct: 116 NPQPIVALQG---MKIKQIACGDSHCLTVT--------FNGQVHSWGRNQNGQLGLGNNQ 164
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEA 224
+L+P+++K + V + + G HT+ ++ GD+ W WG LGL ++
Sbjct: 165 DSLLPQKIKAF-EGVCVKMIAAGAEHTTAITEGGDLYGWGWGRYGNLGL--------SDR 215
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
D P +S G K V VACG H+V V+ G L+++G + G LG G D
Sbjct: 216 DDRSVPEKVS--SVEGEKM---VLVACGWRHSVSVSSSG-ALYTYGWSKYGQLGHGDFQD 269
Query: 285 FFAP 288
P
Sbjct: 270 HLVP 273
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 18/124 (14%)
Query: 172 EQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP 230
E V E P Q V L+S G H++ + S V SWG + + L ++ D P
Sbjct: 13 EAVPEAPEQSVILISA--GANHSAALLSGQMVCSWGRGE------DGQLGHGDSEDRPVP 64
Query: 231 ILISGNGPHGPKFQDP--VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+++ F P V CGA HT+ +DD +L+SWG G G LG G + D F P
Sbjct: 65 TVLT-------SFDVPRVTSVICGADHTIAYSDDEMQLYSWGWGDFGRLGHGNSSDVFNP 117
Query: 289 AIVL 292
++
Sbjct: 118 QPIV 121
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 73/220 (33%), Gaps = 68/220 (30%)
Query: 7 VKAGGMMSLAIDNAGALWMWG-----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+ AG + AI G L+ WG N L D P V G +V
Sbjct: 183 IAAGAEHTTAITEGGDLYGWGWGRYGNLGLSDRDDRS--------VPEKVSSVEGEKMVL 234
Query: 62 VACGSEHVVALVSAGETYK----------------------------------------- 80
VACG H V++ S+G Y
Sbjct: 235 VACGWRHSVSVSSSGALYTYGWSKYGQLGHGDFQDHLVPRKLEALKDVPISQISGGWRHT 294
Query: 81 ---GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
ED Y WG N GQ+G+ D P + ++ + +V CG HT LT
Sbjct: 295 MAVAEDGKLYGWGWNKFGQVGVEDNVDHCSPVEVNFPDEQK---IVQVACGWRHTLALTE 351
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
K +++G G +GQLGHG P+ + L
Sbjct: 352 NKN--------IFSWGRGASGQLGHGEIIDRNTPKMIDAL 383
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G ++A+ G L+ WG E V +P V +V+VA
Sbjct: 284 ISQISGGWRHTMAVAEDGKLYGWGWNKFGQVGVEDN---VDHCSPVEVNFPDEQKIVQVA 340
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
CG H +AL E+ +SWG +GQLG G+ R PK+I+ + D
Sbjct: 341 CGWRHTLALT--------ENKNIFSWGRGASGQLGHGEIIDRNTPKMIDALSLD 386
>gi|326509355|dbj|BAJ91594.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518534|dbj|BAJ88296.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 442
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 144/336 (42%), Gaps = 76/336 (22%)
Query: 3 QICSVKAGGMMSLAI-DNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
++ SV G ++A D+ L+ WG D G + F P P+ G + +
Sbjct: 74 RVTSVICGADHTIAYSDDEMQLYSWG---WGDFGRLGHGNSSDVFNPQPIVALQGMKIKQ 130
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ACG H + + T+ G+ +SWG N NGQLGLG+ + L P+ I+ F
Sbjct: 131 IACGDSHCLTV-----TFNGQ---VHSWGRNQNGQLGLGNNQDSLLPQKIKAFEGV---C 179
Query: 122 VYEVTCGSFHTALLTH----------------------RKRPND--------MLESMC-- 149
V + G+ HT +T R P M+ C
Sbjct: 180 VKMIAAGAEHTTAITEGGDLYGWGWGRYGNLGLSDRDDRSVPEKVSSVEGEKMVLVACGW 239
Query: 150 ------------WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
+T+G + GQLGHG Q LVP +++ L V + + G HT V+
Sbjct: 240 RHSVSVSSSGALYTYGWSKYGQLGHGDFQDHLVPRKLEALKD-VPISQISGGWRHTMAVA 298
Query: 198 SAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
G ++ WG K +G+ N D SP+ ++ P Q VQVACG H
Sbjct: 299 EDGKLYGWGWNKFGQVGVEDNV--------DHCSPVEVNF-----PDEQKIVQVACGWRH 345
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
T+ +T++ ++SWGRG SG LG G+ ID P ++
Sbjct: 346 TLALTEN-KNIFSWGRGASGQLGHGEIIDRNTPKMI 380
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 106/237 (44%), Gaps = 35/237 (14%)
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+V+ ++ G+ H AL+S +VC SWG +GQLG GD E R P ++ +F
Sbjct: 21 QSVILISAGANHSAALLSG-------QMVC-SWGRGEDGQLGHGDSEDRPVPTVLTSF-- 70
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
D P V V CG+ HT + +D ++ W G G+ G+LGHG + P+ +
Sbjct: 71 DVP-RVTSVICGADHTIAYS-----DDEMQLYSW--GWGDFGRLGHGNSSDVFNPQPIVA 122
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILIS 234
L Q + + + CG H V+ G V SWG + LGL N + A + +
Sbjct: 123 L-QGMKIKQIACGDSHCLTVTFNGQVHSWGRNQNGQLGLGNNQDSLLPQKIKAFEGVCVK 181
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A GA HT +T+ G L+ WG GR G LG D P V
Sbjct: 182 -------------MIAAGAEHTTAITEGG-DLYGWGWGRYGNLGLSDRDDRSVPEKV 224
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 106/244 (43%), Gaps = 35/244 (14%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
P+ + F V V CG++H +A Y +++ YSWG + G+LG G+
Sbjct: 63 VPTVLTSFDVPRVTSVICGADHTIA-------YSDDEMQLYSWGWGDFGRLGHGNSSDVF 115
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P+ I + ++ CG H +T ++G +NGQLG G Q
Sbjct: 116 NPQPIVALQG---MKIKQIACGDSHCLTVT--------FNGQVHSWGRNQNGQLGLGNNQ 164
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEA 224
+L+P+++K + V + + G HT+ ++ GD+ W WG LGL + E
Sbjct: 165 DSLLPQKIKAF-EGVCVKMIAAGAEHTTAITEGGDLYGWGWGRYGNLGLSDRDDRSVPEK 223
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
++ G K V VACG H+V V+ G L+++G + G LG G D
Sbjct: 224 VSSV----------EGEKM---VLVACGWRHSVSVSSSG-ALYTYGWSKYGQLGHGDFQD 269
Query: 285 FFAP 288
P
Sbjct: 270 HLVP 273
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 18/124 (14%)
Query: 172 EQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP 230
E V E P Q V L+S G H++ + S V SWG + + L ++ D P
Sbjct: 13 EAVPEAPEQSVILISA--GANHSAALLSGQMVCSWGRGE------DGQLGHGDSEDRPVP 64
Query: 231 ILISGNGPHGPKFQDP--VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+++ F P V CGA HT+ +DD +L+SWG G G LG G + D F P
Sbjct: 65 TVLT-------SFDVPRVTSVICGADHTIAYSDDEMQLYSWGWGDFGRLGHGNSSDVFNP 117
Query: 289 AIVL 292
++
Sbjct: 118 QPIV 121
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 73/220 (33%), Gaps = 68/220 (30%)
Query: 7 VKAGGMMSLAIDNAGALWMWG-----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+ AG + AI G L+ WG N L D P V G +V
Sbjct: 183 IAAGAEHTTAITEGGDLYGWGWGRYGNLGLSDRDDRS--------VPEKVSSVEGEKMVL 234
Query: 62 VACGSEHVVALVSAGETYK----------------------------------------- 80
VACG H V++ S+G Y
Sbjct: 235 VACGWRHSVSVSSSGALYTYGWSKYGQLGHGDFQDHLVPRKLEALKDVPISQISGGWRHT 294
Query: 81 ---GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
ED Y WG N GQ+G+ D P + ++ + +V CG HT LT
Sbjct: 295 MAVAEDGKLYGWGWNKFGQVGVEDNVDHCSPVEVNFPDEQK---IVQVACGWRHTLALTE 351
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
K +++G G +GQLGHG P+ + L
Sbjct: 352 NKN--------IFSWGRGASGQLGHGEIIDRNTPKMIDAL 383
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G ++A+ G L+ WG E V +P V +V+VA
Sbjct: 284 ISQISGGWRHTMAVAEDGKLYGWGWNKFGQVGVEDN---VDHCSPVEVNFPDEQKIVQVA 340
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
CG H +AL E+ +SWG +GQLG G+ R PK+I+ + D
Sbjct: 341 CGWRHTLALT--------ENKNIFSWGRGASGQLGHGEIIDRNTPKMIDALSLD 386
>gi|322795832|gb|EFZ18511.1| hypothetical protein SINV_14428 [Solenopsis invicta]
Length = 786
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 134/290 (46%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +A+ + G ++ WG D G + VS P + D G +V +ACG
Sbjct: 18 AVSSGGKHCIALSSEGHVYSWGE---GDDGKLGHGNKVSYDRPKLIEDLLGVEIVDIACG 74
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H A+ SAG Y+WG G+LG GD + +LRPK++E QD + V +V
Sbjct: 75 GHHSAAITSAGW--------LYTWGKGRYGRLGHGDSDDQLRPKVVEAL-QD--YKVIDV 123
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + VP ++ L + +V
Sbjct: 124 ACGSGDAQTLCVTDDDN------VWSWGDGDYGKLGRGGSDGCKVPLKIDSLAG-LGVVK 176
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + + R A+ G
Sbjct: 177 VECGSQFSVALTRSGAVYTWG--KGDYHRLGHGTDDHVRRPRKVAAL----------QGK 224
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V +D G ++++WG G LG G T P +V
Sbjct: 225 KI---ISIATGSLHCVACSDKG-EVFTWGDNDEGQLGDGTTSALHRPRLV 270
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 103/255 (40%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + GG S AI +AG L+ WG G P V + V+ V
Sbjct: 67 EIVDIACGGHHSAAITSAGWLYTWGKGRY---GRLGHGDSDDQLRPKVVEALQDYKVIDV 123
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L +D +SWG + G+LG G + P I++ + V
Sbjct: 124 ACGSGDAQTLCVT------DDDNVWSWGDGDYGKLGRGGSDGCKVPLKIDSL---AGLGV 174
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CGS + LT +T+G G+ +LGHGT P +V L Q
Sbjct: 175 VKVECGSQFSVALTR--------SGAVYTWGKGDYHRLGHGTDDHVRRPRKVAAL-QGKK 225
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
++S+ G H S G+V++WG + GD + L H +
Sbjct: 226 IISIATGSLHCVACSDKGEVFTWGDND-----------EGQLGDGTTSALHRPRLVHALQ 274
Query: 243 FQDPVQVACGAAHTV 257
+ +VACG+AHT+
Sbjct: 275 GKKITRVACGSAHTL 289
>gi|332027112|gb|EGI67208.1| Putative E3 ubiquitin-protein ligase HERC2 [Acromyrmex echinatior]
Length = 4853
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 134/290 (46%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +A+ + G ++ WG D G + VS P + D G +V +ACG
Sbjct: 4085 AVSSGGKHCIALSSEGHVYSWGE---GDDGKLGHGNKVSYDRPKLIEDLLGVEIVDIACG 4141
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H A+ SAG Y+WG G+LG GD + +LRPK++E QD + V +V
Sbjct: 4142 GHHSAAITSAGW--------LYTWGKGRYGRLGHGDSDDQLRPKVVEAL-QD--YKVIDV 4190
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + VP ++ L + +V
Sbjct: 4191 ACGSGDAQTLCVTDDDN------VWSWGDGDYGKLGRGGSDGCKVPLKIDSLAG-LGVVK 4243
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + + R A+ G
Sbjct: 4244 VECGSQFSVALTRSGAVYTWG--KGDYHRLGHGTDDHVRRPRKVAAL----------QGK 4291
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V +D G ++++WG G LG G T P +V
Sbjct: 4292 KI---ISIATGSLHCVACSDKG-EVFTWGDNDEGQLGDGTTSALHRPRLV 4337
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 127/288 (44%), Gaps = 37/288 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + +S P + + +ACG
Sbjct: 3103 AVHSGGKHALALTQDGKVFSWGE---GEDGKLGHGNCISLDKPKLIEVLKSKRIRDIACG 3159
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S GE Y+WG G+LG GD ++ RPK+++ V +V
Sbjct: 3160 SGHSAAIASNGE--------LYTWGLGEYGRLGHGDTITQTRPKLVQALIGHR---VVQV 3208
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + +++G G+ G+LG G + P V L + +
Sbjct: 3209 ACGSRDAQTMALT--------TDGYVYSWGDGDFGKLGRGGSDGCYTPLLVDRL-NNLGV 3259
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+ V+CG + ++ G+VW+WG KG L P L+ G G K
Sbjct: 3260 IQVECGAQFSLALTKYGEVWTWG--KG----DYFRLGHGNDHHVRKPTLV--EGLRGKKI 3311
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ VA GA H + VTD G ++++WG G G G T P++V
Sbjct: 3312 ---IHVAVGALHCLAVTDTG-QVYAWGDNDHGQQGNGTTSVNRKPSLV 3355
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 110/234 (47%), Gaps = 34/234 (14%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V G +H +AL G+ + SWG +G+LG G+ S +PK+IE
Sbjct: 3102 VAVHSGGKHALALTQDGKVF--------SWGEGEDGKLGHGNCISLDKPKLIEVLKSKR- 3152
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ ++ CGS H+A + +T+GLGE G+LGHG T + P+ V+ L
Sbjct: 3153 --IRDIACGSGHSAAIASNGE--------LYTWGLGEYGRLGHGDTITQTRPKLVQALIG 3202
Query: 180 YVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ +V V CG T +++ G V+SWG + G L R + +P+L+
Sbjct: 3203 H-RVVQVACGSRDAQTMALTTDGYVYSWG-DGDFG-----KLGRGGSDGCYTPLLVDRLN 3255
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G +QV CGA ++ +T G ++W+WG+G LG G P +V
Sbjct: 3256 NLG-----VIQVECGAQFSLALTKYG-EVWTWGKGDYFRLGHGNDHHVRKPTLV 3303
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 126/277 (45%), Gaps = 45/277 (16%)
Query: 22 ALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD--FHGHTVVKVACGSEHVVALVSAGETY 79
A+++WG L D GG L S PV+ + +A GS+ + + G+
Sbjct: 3013 AVYVWG---LNDKDQLGG--LKGSKIKLPVYSETLSKLKPIHIAGGSKTLFIVSQEGK-- 3065
Query: 80 KGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRK 139
Y+ G NG+LGLGD + PK I +Q V V G H LT
Sbjct: 3066 ------LYACGEGTNGRLGLGDDNNMCEPKAIPFLSQFVIKKV-AVHSGGKHALALTQ-- 3116
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
+ +++G GE+G+LGHG S P+ + E+ + + + CG H++ ++S
Sbjct: 3117 ------DGKVFSWGEGEDGKLGHGNCISLDKPKLI-EVLKSKRIRDIACGSGHSAAIASN 3169
Query: 200 GDVWSWGMEKGLGLCPNASLTRNEAGDAIS---PILISGNGPHGPKFQDPVQVACGA--A 254
G++++WG+ R GD I+ P L+ H VQVACG+ A
Sbjct: 3170 GELYTWGL---------GEYGRLGHGDTITQTRPKLVQALIGH-----RVVQVACGSRDA 3215
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
T+ +T DGY ++SWG G G LG G + + P +V
Sbjct: 3216 QTMALTTDGY-VYSWGDGDFGKLGRGGSDGCYTPLLV 3251
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 108/255 (42%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S AI + G L+ WG L + G ++ P V GH VV+V
Sbjct: 3152 RIRDIACGSGHSAAIASNGELYTWG---LGEYGRLGHGDTITQTRPKLVQALIGHRVVQV 3208
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS + + Y YSWG + G+LG G + P +++ N V
Sbjct: 3209 ACGSRDAQTMALTTDGY------VYSWGDGDFGKLGRGGSDGCYTPLLVDRLNN---LGV 3259
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CG+ + LT WT+G G+ +LGHG P V+ L +
Sbjct: 3260 IQVECGAQFSLALTKYGE--------VWTWGKGDYFRLGHGNDHHVRKPTLVEGL-RGKK 3310
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
++ V G H V+ G V++WG + G N + + N P L+ H +
Sbjct: 3311 IIHVAVGALHCLAVTDTGQVYAWG-DNDHGQQGNGTTSVNR-----KPSLV-----HDLE 3359
Query: 243 FQDPVQVACGAAHTV 257
+V+CG++H++
Sbjct: 3360 DARVNRVSCGSSHSI 3374
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 106/261 (40%), Gaps = 44/261 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
+I + GG S AI +AG L+ WG +G + + P V
Sbjct: 4134 EIVDIACGGHHSAAITSAGWLYTWG---------KGRYGRLGHGDSDDQLRPKVVEALQD 4184
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+ V+ VACGS L +D +SWG + G+LG G + P I++
Sbjct: 4185 YKVIDVACGSGDAQTLCVT------DDDNVWSWGDGDYGKLGRGGSDGCKVPLKIDSL-- 4236
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ V +V CGS + LT +T+G G+ +LGHGT P +V
Sbjct: 4237 -AGLGVVKVECGSQFSVALTR--------SGAVYTWGKGDYHRLGHGTDDHVRRPRKVAA 4287
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L Q ++S+ G H S G+V++WG + GD + L
Sbjct: 4288 L-QGKKIISIATGSLHCVACSDKGEVFTWGDND-----------EGQLGDGTTSALHRPR 4335
Query: 237 GPHGPKFQDPVQVACGAAHTV 257
H + + +VACG+AHT+
Sbjct: 4336 LVHALQGKKITRVACGSAHTL 4356
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 52/257 (20%)
Query: 43 VSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
V F+ P+ T++ +H +AL +D YSWG + G+LG GD
Sbjct: 560 VHGFSDKPI------TMIASHADGKHYLALT--------QDGCVYSWGNGDGGRLGHGDT 605
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
S PK+IE + + + + CGS ++A L+ +T+G G G+LGH
Sbjct: 606 ISYDEPKLIEALLEKN---IIFIACGSTYSAALSANGE--------LYTWGRGNYGRLGH 654
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
G + P V L + +V V CG T V+++G V+SWG
Sbjct: 655 GNFDDVMTPTLVTTLKGHT-VVHVACGSGDSQTLCVTASGIVFSWG-------------- 699
Query: 221 RNEAGDAISPILISGNGPHGPKFQDP------VQVACGAAHTVLVTDDGYKLWSWGRGRS 274
GD +G PK D V+V CG+ + +T G ++++WG+G +
Sbjct: 700 ---DGDYGKLGRGGTDGSKTPKIVDKLLDINVVKVFCGSQFSAALTAHG-EVYTWGKGDA 755
Query: 275 GVLGTGKTIDFFAPAIV 291
LG G P ++
Sbjct: 756 YRLGHGSEEHVRYPKVI 772
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 106/258 (41%), Gaps = 49/258 (18%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G S A+ G L+ WG + G + TP+ V GHTVV VA
Sbjct: 622 IIFIACGSTYSAALSANGELYTWGR---GNYGRLGHGNFDDVMTPTLVTTLKGHTVVHVA 678
Query: 64 CGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
CGS + + ++G + +SWG + G+LG G + PKI++ +
Sbjct: 679 CGSGDSQTLCVTASG--------IVFSWGDGDYGKLGRGGTDGSKTPKIVDKLLDIN--- 727
Query: 122 VYEVTCGS-FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V +V CGS F AL H + +T+G G+ +LGHG+ + P+ ++ L
Sbjct: 728 VVKVFCGSQFSAALTAHGE---------VYTWGKGDAYRLGHGSEEHVRYPKVIESLRDR 778
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ + G H ++ V+ WG RN+ G I P L G
Sbjct: 779 -KVKDLSVGTTHILALTEDQFVYGWG--------------RNDYGQ-IDPTL-------G 815
Query: 241 PKFQDPVQVACGAAHTVL 258
P +P ++ TV+
Sbjct: 816 PIISEPTLCPTLSSKTVI 833
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 30/209 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P E+ + P + G T +
Sbjct: 3997 YGWGHNHRGQLGGLEGPKVKLPAPCESLSALRPIQL----AGGEQTLFAV-------TAD 4045
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
++ G G G+LG G T S ++P ++ + Q+V++ V+V G H +SS G V+S
Sbjct: 4046 GKIYSTGYGAAGRLGIGGTDSVMIPTLLESI-QHVFIKKVAVSSGGKHCIALSSEGHVYS 4104
Query: 205 WGM--EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG + LG S R + + + + I V +ACG H+ +T
Sbjct: 4105 WGEGDDGKLGHGNKVSYDRPKLIEDLLGVEI-------------VDIACGGHHSAAITSA 4151
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ L++WG+GR G LG G + D P +V
Sbjct: 4152 GW-LYTWGKGRYGRLGHGDSDDQLRPKVV 4179
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G + LA+ + G ++ WG+ D +G + + PS V D V +V
Sbjct: 3310 KIIHVAVGALHCLAVTDTGQVYAWGD---NDHGQQGNGTTSVNRKPSLVHDLEDARVNRV 3366
Query: 63 ACGSEHVVALVSAGETYKG-EDLVCYSWGANNNGQLGLG 100
+CGS H +A V + G +D V + + GQ+ LG
Sbjct: 3367 SCGSSHSIAWVLVDQPSNGNQDPVTFPTVRDPLGQMCLG 3405
>gi|157127963|ref|XP_001661249.1| hect E3 ubiquitin ligase [Aedes aegypti]
gi|108882309|gb|EAT46534.1| AAEL002306-PA [Aedes aegypti]
Length = 4837
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 140/291 (48%), Gaps = 41/291 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG + G + ++ P + V +ACG
Sbjct: 2983 AVHSGGKHAMALTLDGKVFSWGE---GEDGKLGHGNRLTLEKPKLIESLRTKRVRDIACG 3039
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE Y+WG G+LG GD ++L+PK++ T V +V
Sbjct: 3040 SSHSAAITSSGE--------LYTWGLGEYGRLGHGDNCTQLKPKLVTTLQGHR---VVQV 3088
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L + E + +++G G+ G+LG G ++ VP QV+ L V ++
Sbjct: 3089 ACGSRDAQTLCLTE------EGLVFSWGDGDFGKLGRGGSEGCSVPHQVERL-NSVGVMQ 3141
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ +G+VW+WG KG LG + + + +PI G
Sbjct: 3142 IECGAQFSLALTKSGEVWTWG--KGDYYRLGHGTDQHVRKP------TPI-------QGL 3186
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ + + VA GA H + VTD G ++++WG G G+G T+ P +VL
Sbjct: 3187 RGKKVIHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGSGNTVVNKKPNLVL 3236
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 112/239 (46%), Gaps = 35/239 (14%)
Query: 57 HTVVK---VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
H ++K V G +H +AL S GE + SWG +G+LG G+R+S RPK+IE
Sbjct: 4021 HVIIKKVAVNSGGKHCLALSSDGEVF--------SWGEGEDGKLGHGNRDSYDRPKLIEA 4072
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
S V ++ CGS H+A +T + T+G G G+LGHG ++ L P+
Sbjct: 4073 L---SGIGVIDIACGSAHSACITS--------QGHVLTWGKGRYGRLGHGDSEDQLQPKL 4121
Query: 174 VKELPQYVYL-VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
V+ L Y + ++ G T ++ +VWSWG + G L R + P+
Sbjct: 4122 VEALLGYRAIDIACGSGDAQTLCITDDDNVWSWG-DGDYG-----KLGRGGSDGCKIPMK 4175
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
I G ++V CG+ +V +T G +++WG+G LG G T P V
Sbjct: 4176 IESLAGLG-----VIKVECGSQFSVALTRSG-SVYTWGKGDYHRLGHGNTDHVRRPKKV 4228
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 124/265 (46%), Gaps = 42/265 (15%)
Query: 36 TEGG--FSLVSS----FTPSPVWDFHGHTVVKVA--CGSEHVVALVSAGETYKGEDLVCY 87
T GG FSL S+ P G VV++A C +HV+ L SA E +
Sbjct: 539 TTGGQVFSLHSNSSENIAPKAFEGLEGVHVVQIAAHCEGKHVMVLSSANEVW-------- 590
Query: 88 SWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLES 147
SWGA + G+LG GD S+ P +I ++ +Y CG+ ++A +T +
Sbjct: 591 SWGAGDGGRLGHGDTVSKEHPTMIVGLHEKQVCGIY---CGASYSAAIT--------IAG 639
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVKELPQY-VYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T+G G G+LGHG + LVP QV+ L Y V V++ G H+ V+ G +++WG
Sbjct: 640 ELFTWGRGTYGRLGHGNSDDKLVPTQVQALKSYKVVDVALGSGDAHSMCVTDNGLLFAWG 699
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
+ G N S SPI + + + ++ G+ +V ++ DG L
Sbjct: 700 -DGDFGKLGNGSCNG-------SPIPVQID-----TLVNVSRIYSGSQFSVALSCDG-TL 745
Query: 267 WSWGRGRSGVLGTGKTIDFFAPAIV 291
++WG+G G LG G + P +V
Sbjct: 746 YTWGKGHGGRLGHGNSEHSNVPKLV 770
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 127/290 (43%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + S P + G V+ +ACG
Sbjct: 4028 AVNSGGKHCLALSSDGEVFSWGE---GEDGKLGHGNRDSYDRPKLIEALSGIGVIDIACG 4084
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H + S G +WG G+LG GD E +L+PK++E + ++
Sbjct: 4085 SAHSACITSQGHVL--------TWGKGRYGRLGHGDSEDQLQPKLVEAL---LGYRAIDI 4133
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + +P +++ L + ++
Sbjct: 4134 ACGSGDAQTLCITDDDN------VWSWGDGDYGKLGRGGSDGCKIPMKIESLAG-LGVIK 4186
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + R + A+ G
Sbjct: 4187 VECGSQFSVALTRSGSVYTWG--KGDYHRLGHGNTDHVRRPKKVAAL----------QGK 4234
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V +D G ++++WG G LG G P +V
Sbjct: 4235 KI---ISIATGSLHCVACSDSG-EVFTWGDNDEGQLGDGTVTAIQRPRLV 4280
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 30/204 (14%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC--GSFHTALLTHRK 139
+D Y+ G NG+LGLG + P+ + NQ + V +V G H LT
Sbjct: 2942 QDGKLYACGEGTNGRLGLGHNNNVPTPRQVPILNQ---YVVKKVAVHSGGKHAMALT--- 2995
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
L+ +++G GE+G+LGHG + P+ ++ L + + + CG H++ ++S+
Sbjct: 2996 -----LDGKVFSWGEGEDGKLGHGNRLTLEKPKLIESL-RTKRVRDIACGSSHSAAITSS 3049
Query: 200 GDVWSWGM-EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHT 256
G++++WG+ E G L + + P L++ H VQVACG+ A T
Sbjct: 3050 GELYTWGLGEYG-------RLGHGDNCTQLKPKLVTTLQGH-----RVVQVACGSRDAQT 3097
Query: 257 VLVTDDGYKLWSWGRGRSGVLGTG 280
+ +T++G ++SWG G G LG G
Sbjct: 3098 LCLTEEGL-VFSWGDGDFGKLGRG 3120
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 114/263 (43%), Gaps = 39/263 (14%)
Query: 11 GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVV 70
G + + +A +W WG D G VS P+ + H V + CG+ +
Sbjct: 577 GKHVMVLSSANEVWSWG---AGDGGRLGHGDTVSKEHPTMIVGLHEKQVCGIYCGASYSA 633
Query: 71 ALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGS- 129
A+ AGE ++WG G+LG G+ + +L P ++ + V +V GS
Sbjct: 634 AITIAGE--------LFTWGRGTYGRLGHGNSDDKLVPTQVQALKS---YKVVDVALGSG 682
Query: 130 -FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
H+ +T + + +G G+ G+LG+G+ + +P Q+ L V + +
Sbjct: 683 DAHSMCVTD--------NGLLFAWGDGDFGKLGNGSCNGSPIPVQIDTL---VNVSRIYS 731
Query: 189 GLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ 248
G + +S G +++WG KG G L + + P L+ G K D
Sbjct: 732 GSQFSVALSCDGTLYTWG--KGHG----GRLGHGNSEHSNVPKLV--RALEGKKIAD--- 780
Query: 249 VACGAAHTVLVTDDGYKLWSWGR 271
VA G+AH + +T G +L+ WGR
Sbjct: 781 VAVGSAHCLALTSSG-ELYGWGR 802
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 110/266 (41%), Gaps = 52/266 (19%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS---FTPSPVWDFHGHTV 59
Q+C + G S AI AG L+ WG T G +S P+ V + V
Sbjct: 621 QVCGIYCGASYSAAITIAGELFTWGR------GTYGRLGHGNSDDKLVPTQVQALKSYKV 674
Query: 60 VKVACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V VA GS H + + G + ++WG + G+LG G P I+T
Sbjct: 675 VDVALGSGDAHSMCVTDNG--------LLFAWGDGDFGKLGNGSCNGSPIPVQIDTLVN- 725
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + GS + L+ + +T+G G G+LGHG ++ + VP+ V+ L
Sbjct: 726 ----VSRIYSGSQFSVALS--------CDGTLYTWGKGHGGRLGHGNSEHSNVPKLVRAL 773
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ + V G H ++S+G+++ WG +CP +G + PI+
Sbjct: 774 -EGKKIADVAVGSAHCLALTSSGELYGWGRNDYQQICP--------SGVSRDPII----- 819
Query: 238 PHGPKFQDPVQV-----ACGAAHTVL 258
H P P + CGAA +++
Sbjct: 820 -HSPILTTPPTLRISGMTCGAAQSIV 844
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 78/190 (41%), Gaps = 23/190 (12%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +L I + +W WG+ D G P + G V+KV CGS+
Sbjct: 4137 SGDAQTLCITDDDNVWSWGD---GDYGKLGRGGSDGCKIPMKIESLAGLGVIKVECGSQF 4193
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL +G Y+WG + +LG G+ + RPK + + + G
Sbjct: 4194 SVALTRSGSV--------YTWGKGDYHRLGHGNTDHVRRPKKVAALQGKK---IISIATG 4242
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
S H + D E W G + GQLG GT + P V+ L Q ++V V C
Sbjct: 4243 SLHCVACS------DSGEVFTW--GDNDEGQLGDGTVTAIQRPRLVQSL-QGKHIVKVIC 4293
Query: 189 GLFHTSVVSS 198
G HT +S+
Sbjct: 4294 GSAHTLALST 4303
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 90/205 (43%), Gaps = 26/205 (12%)
Query: 89 WGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLES 147
WG N+ QLG G + S+++ P +Q P + GS +++ +
Sbjct: 2897 WGLNDKEQLG-GLKGSKVKLPTYSSVLSQLKP---IHIAGGSKSLFIVSQ--------DG 2944
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVDCGLFHTSVVSSAGDVWSWG 206
+ G G NG+LG G + P QV L QYV V+V G H ++ G V+SWG
Sbjct: 2945 KLYACGEGTNGRLGLGHNNNVPTPRQVPILNQYVVKKVAVHSGGKHAMALTLDGKVFSWG 3004
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
+ L LT + P LI + +D +ACG++H+ +T G +L
Sbjct: 3005 EGEDGKLGHGNRLTLEK------PKLI--ESLRTKRVRD---IACGSSHSAAITSSG-EL 3052
Query: 267 WSWGRGRSGVLGTGKTIDFFAPAIV 291
++WG G G LG G P +V
Sbjct: 3053 YTWGLGEYGRLGHGDNCTQLKPKLV 3077
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 14/176 (7%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ ++ G SLA+ +G +W WG D G + P+P+ G V+ VA
Sbjct: 3139 VMQIECGAQFSLALTKSGEVWTWGK---GDYYRLGHGTDQHVRKPTPIQGLRGKKVIHVA 3195
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ +G+ Y+WG N++GQ G G+ +P ++ D + V
Sbjct: 3196 VGALHCLAVTDSGQV--------YAWGDNDHGQQGSGNTVVNKKPNLV--LGLDGVF-VN 3244
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V CGS H+ + + P++ + F + ++ GH A E PQ
Sbjct: 3245 RVACGSSHSVAWSLPQNPSEKDKKEPVPFAVSKDPLGGHSLGIHASDTEPTTAHPQ 3300
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 97/209 (46%), Gaps = 30/209 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
+ WG N+ GQLG D P E + P + G T + P+ L
Sbjct: 3940 FGWGHNHRGQLGGLDGSRIKMPTPCEALSLLRPIQI----AGGEQT---LYAVTPDGKL- 3991
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T S P V+ L Q+V + V+V+ G H +SS G+V+S
Sbjct: 3992 ---YATGYGAGGRLGIGGTDSVSAPTLVESL-QHVIIKKVAVNSGGKHCLALSSDGEVFS 4047
Query: 205 WGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG E G LG S R + +A+S I + + +ACG+AH+ +T
Sbjct: 4048 WGEGEDGKLGHGNRDSYDRPKLIEALSGIGV-------------IDIACGSAHSACITSQ 4094
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ L +WG+GR G LG G + D P +V
Sbjct: 4095 GHVL-TWGKGRYGRLGHGDSEDQLQPKLV 4122
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G + LA+ ++G ++ WG+ D +G + V + P+ V G V +V
Sbjct: 3190 KVIHVAVGALHCLAVTDSGQVYAWGD---NDHGQQGSGNTVVNKKPNLVLGLDGVFVNRV 3246
Query: 63 ACGSEHVVA 71
ACGS H VA
Sbjct: 3247 ACGSSHSVA 3255
>gi|376260724|ref|YP_005147444.1| RCC1 domain-containing protein, alpha-tubulin suppressor
[Clostridium sp. BNL1100]
gi|373944718|gb|AEY65639.1| RCC1 domain-containing protein, alpha-tubulin suppressor
[Clostridium sp. BNL1100]
Length = 985
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++++ S+ AG S+A+ + G +W WG D G + + +P V + G ++
Sbjct: 224 LNKVSSISAGKYYSMALKSDGTVWTWGE---NDYGQLGDGTTATRLSPVQVQNLSG--II 278
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++ G+ H +AL +D ++WG N +GQLG G S+ P ++ +
Sbjct: 279 AISSGNSHSLAL--------KDDGTVWAWGDNESGQLGDGTTNSKYIPSQVQGLS----- 325
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ ++CG +++ L + + W +G +GQLG GTT V L
Sbjct: 326 GIVSISCGFYYSMALKN--------DGTVWVWGDNTSGQLGDGTTTDRNTAVPVSGLDG- 376
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++++ CG+ H+ + + G VW+WG L +++N A + ISG
Sbjct: 377 --VIAIACGVNHSMALRNDGTVWTWGFNAFGQLGDGTKVSKNTA------VPISG----- 423
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + CG +H++ + DDG +W+WG + G LG G I P+ V
Sbjct: 424 --LDGIIAITCGTSHSMALKDDG-TVWAWGDNQYGQLGNGTFISNTTPSQV 471
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 125/280 (44%), Gaps = 43/280 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I V G +LA+++ G +W C D G + + +P PV + V ++
Sbjct: 177 IIKVSGGESHTLALESDGTVWA---CGENDYGQLGNNNTIDINSPIPVEGLN--KVSSIS 231
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G + +AL S G ++WG N+ GQLG G +RL P ++ + +
Sbjct: 232 AGKYYSMALKSDG--------TVWTWGENDYGQLGDGTTATRLSPVQVQNLS-----GII 278
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
++ G+ H+ L + W +G E+GQLG GTT S +P QV+ L +
Sbjct: 279 AISSGNSHSLALKD--------DGTVWAWGDNESGQLGDGTTNSKYIPSQVQGLSG---I 327
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
VS+ CG +++ + + G VW WG L + RN A + +SG
Sbjct: 328 VSISCGFYYSMALKNDGTVWVWGDNTSGQLGDGTTTDRNTA------VPVSG-------L 374
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
+ +ACG H++ + +DG +W+WG G LG G +
Sbjct: 375 DGVIAIACGVNHSMALRNDG-TVWTWGFNAFGQLGDGTKV 413
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 120/282 (42%), Gaps = 43/282 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S I S+ G S+A+ N G +W+WG+ S G + T PV G V+
Sbjct: 324 LSGIVSISCGFYYSMALKNDGTVWVWGDNT---SGQLGDGTTTDRNTAVPVSGLDG--VI 378
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+ACG H +AL + G ++WG N GQLG G + S+ I +
Sbjct: 379 AIACGVNHSMALRNDG--------TVWTWGFNAFGQLGDGTKVSKNTAVPISGLD----- 425
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ +TCG+ H+ L + W +G + GQLG+GT S P QV L
Sbjct: 426 GIIAITCGTSHSMALKD--------DGTVWAWGDNQYGQLGNGTFISNTTPSQVSNLSG- 476
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ S+ CG + + G VW+WG + G TR I P
Sbjct: 477 --IKSIFCGYSTSFALKPDGTVWAWGNNE-YGELGKGFTTR-----VIYP-------TET 521
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
D ++ G++H + + +DG +W+WG R G LG G T
Sbjct: 522 LNIGDIKAISIGSSHCLALKNDG-TVWAWGDNRYGQLGDGTT 562
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 120/292 (41%), Gaps = 43/292 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S I ++ +G SLA+ + G +W WG+ +S G + S + PS V G +V
Sbjct: 274 LSGIIAISSGNSHSLALKDDGTVWAWGD---NESGQLGDGTTNSKYIPSQVQGLSG--IV 328
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++CG + +AL + G + WG N +GQLG G R + +
Sbjct: 329 SISCGFYYSMALKNDG--------TVWVWGDNTSGQLGDGTTTDRNTAVPVSGLD----- 375
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + CG H+ L + + WT+G GQLG GT S + L
Sbjct: 376 GVIAIACGVNHSMALRN--------DGTVWTWGFNAFGQLGDGTKVSKNTAVPISGLDG- 426
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++++ CG H+ + G VW+WG + G N + N +S + G
Sbjct: 427 --IIAITCGTSHSMALKDDGTVWAWG-DNQYGQLGNGTFISNTTPSQVSNL-------SG 476
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
K + CG + + + DG +W+WG G LG G T P L
Sbjct: 477 IK-----SIFCGYSTSFALKPDG-TVWAWGNNEYGELGKGFTTRVIYPTETL 522
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 125/322 (38%), Gaps = 65/322 (20%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I ++ G S+A+ + G +W WG+ G + +S+ TPS V + G + +
Sbjct: 427 IIAITCGTSHSMALKDDGTVWAWGDNQYGQ---LGNGTFISNTTPSQVSNLSG--IKSIF 481
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG AL G ++WG N G+LG G + P ET N +
Sbjct: 482 CGYSTSFALKPDG--------TVWAWGNNEYGELGKGFTTRVIYPT--ETLNIGD---IK 528
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
++ GS H L + + W +G GQLG GTT +P QV + +
Sbjct: 529 AISIGSSHCLALKN--------DGTVWAWGDNRYGQLGDGTTTIKSLPVQVSGISG---I 577
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEK----------------------GLGLCPNASLTR 221
++ G H+ + S G VW+WG G+ + N + R
Sbjct: 578 TAISAGGSHSLALKSDGTVWAWGQNNVGQLGDGTKEDRNTPVQVSELSGITVISNC-IYR 636
Query: 222 NEAGDAISPILISGNGPHG---PKFQDPVQVA---------CGAAHTVLVTDDGYKLWSW 269
+ A + + G+ + K P+Q++ CG H + + +DG +W+W
Sbjct: 637 SFALKNDGTVWVWGSDSYNLPLEKMTMPIQISGLSGIIAIECGTYHNLALKNDG-TVWAW 695
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G+ G G G T P V
Sbjct: 696 GKNNFGQFGDGTTTTTNIPVQV 717
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 108/287 (37%), Gaps = 62/287 (21%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNC---PLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S I ++ AGG SLA+ + G +W WG L D + E TP V + G
Sbjct: 574 ISGITAISAGGSHSLALKSDGTVWAWGQNNVGQLGDGTKE------DRNTPVQVSELSGI 627
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP--KIIETFN 115
TV+ + + S+ N+G + + +S P K+
Sbjct: 628 TVI---------------------SNCIYRSFALKNDGTVWVWGSDSYNLPLEKMTMPIQ 666
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
+ + CG++H L + + W +G GQ G GTT + +P QV
Sbjct: 667 ISGLSGIIAIECGTYHNLALKN--------DGTVWAWGKNNFGQFGDGTTTTTNIPVQVS 718
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L + ++ G + + S G VW WG + + P+ T A
Sbjct: 719 GLSG---VKAIAVGGNRSIALKSDGTVWQWGRIL-VSVSPSTVETWTTA----------- 763
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+ D + ++ V + +DG K+++WG G LG G T
Sbjct: 764 ------RQVDGLSEIVSISNNVALKNDG-KVFTWGANDYGQLGDGTT 803
>gi|307204521|gb|EFN83201.1| Probable E3 ubiquitin-protein ligase HERC2 [Harpegnathos saltator]
Length = 4791
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 134/290 (46%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG D G + +S P V D G +V +ACG
Sbjct: 4023 AVNSGGKHCLALSSEGHVYSWGE---GDDGKLGHGNRLSYDRPKLVEDLLGIEIVDIACG 4079
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H A+ SAG Y+WG G+LG GD + +LRPK++E QD + V +V
Sbjct: 4080 GHHSAAITSAG--------WLYTWGKGRYGRLGHGDSDDQLRPKVVEAL-QD--YKVIDV 4128
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + VP ++ L + ++
Sbjct: 4129 ACGSGDAQTLCVTDDDN------VWSWGDGDYGKLGRGGSDGCKVPLKIDSLAG-LGVIK 4181
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + + R A+ G
Sbjct: 4182 VECGSQFSVALTRSGAVYTWG--KGDYHRLGHGTDDHVRRPRKVAAL----------QGK 4229
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V +D G ++++WG G LG G T P +V
Sbjct: 4230 KI---ISIATGSLHCVACSDKG-EVFTWGDNDEGQLGDGTTSALQRPRLV 4275
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 128/286 (44%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + + P + + +ACG
Sbjct: 3042 AVHSGGKHALALTQDGKVFSWGE---GEDGKLGHGNCTTLDKPRLIESLKSKRIRDIACG 3098
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S GE Y+WG G+LG GD ++++PK+++ S V +V
Sbjct: 3099 SGHSAAIASNGE--------LYTWGLGEYGRLGHGDTATQMKPKLVQAL---SGQRVVQV 3147
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS ++ + +T+G G+ G+LG G + P V L + +V
Sbjct: 3148 ACGSRDAQTMSLTA------DGCVYTWGDGDFGKLGRGGSDGCYTPLLVDRL-NGLGVVQ 3200
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
V+CG + ++ G+VW+WG KG L P L+ G G K
Sbjct: 3201 VECGAQFSLALTKYGEVWTWG--KG----DYFRLGHGNDHHVRKPTLV--EGLRGKKI-- 3250
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G TI P++V
Sbjct: 3251 -VHVAVGALHCLAVTDTG-QVYAWGDNDHGQQGNGTTIVNRKPSLV 3294
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 109/234 (46%), Gaps = 34/234 (14%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V G +H +AL G+ + SWG +G+LG G+ + +P++IE+
Sbjct: 3041 VAVHSGGKHALALTQDGKVF--------SWGEGEDGKLGHGNCTTLDKPRLIESLKSKR- 3091
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ ++ CGS H+A + +T+GLGE G+LGHG T + + P+ V+ L
Sbjct: 3092 --IRDIACGSGHSAAIASNGE--------LYTWGLGEYGRLGHGDTATQMKPKLVQALSG 3141
Query: 180 YVYLVSVDCGLFHTSVVSSAGD--VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+V V CG +S D V++WG + G L R + +P+L+
Sbjct: 3142 Q-RVVQVACGSRDAQTMSLTADGCVYTWG-DGDFG-----KLGRGGSDGCYTPLLVDRLN 3194
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G VQV CGA ++ +T G ++W+WG+G LG G P +V
Sbjct: 3195 GLG-----VVQVECGAQFSLALTKYG-EVWTWGKGDYFRLGHGNDHHVRKPTLV 3242
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 121/273 (44%), Gaps = 37/273 (13%)
Query: 22 ALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKG 81
A+++WG L D GG P + +A GS+ + + G+
Sbjct: 2952 AVYVWG---LNDKDQLGGLKGSKIKIPVRSEVLSKLKPIHIAGGSKTLFIVSQEGK---- 3004
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
Y+ G NG+LGLGD + PK+I +Q V V G H LT
Sbjct: 3005 ----LYACGEGTNGRLGLGDDYNMCEPKLIPFLSQYVIKKV-AVHSGGKHALALTQ---- 3055
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ +++G GE+G+LGHG + P ++ L + + + CG H++ ++S G+
Sbjct: 3056 ----DGKVFSWGEGEDGKLGHGNCTTLDKPRLIESL-KSKRIRDIACGSGHSAAIASNGE 3110
Query: 202 VWSWGM-EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVL 258
+++WG+ E G L + + P L+ Q VQVACG+ A T+
Sbjct: 3111 LYTWGLGEYG-------RLGHGDTATQMKPKLV-----QALSGQRVVQVACGSRDAQTMS 3158
Query: 259 VTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+T DG +++WG G G LG G + + P +V
Sbjct: 3159 LTADGC-VYTWGDGDFGKLGRGGSDGCYTPLLV 3190
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 106/261 (40%), Gaps = 44/261 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
+I + GG S AI +AG L+ WG +G + + P V
Sbjct: 4072 EIVDIACGGHHSAAITSAGWLYTWG---------KGRYGRLGHGDSDDQLRPKVVEALQD 4122
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+ V+ VACGS L +D +SWG + G+LG G + P I++
Sbjct: 4123 YKVIDVACGSGDAQTLCVT------DDDNVWSWGDGDYGKLGRGGSDGCKVPLKIDSL-- 4174
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ V +V CGS + LT +T+G G+ +LGHGT P +V
Sbjct: 4175 -AGLGVIKVECGSQFSVALTR--------SGAVYTWGKGDYHRLGHGTDDHVRRPRKVAA 4225
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L Q ++S+ G H S G+V++WG + GD + L
Sbjct: 4226 L-QGKKIISIATGSLHCVACSDKGEVFTWGDND-----------EGQLGDGTTSALQRPR 4273
Query: 237 GPHGPKFQDPVQVACGAAHTV 257
H + + +VACG+AHT+
Sbjct: 4274 LVHALQGKKITRVACGSAHTL 4294
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 118/276 (42%), Gaps = 61/276 (22%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES 104
SF+ PV T++ +H +AL +D YSWG + G+LG GD S
Sbjct: 503 SFSDKPV------TMIASHSDGKHYLALT--------QDGCVYSWGNGDGGRLGHGDNIS 548
Query: 105 RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
PK+IET + + + + CGS ++A L+ +T+G G G+LGHG+
Sbjct: 549 HDEPKLIETLLEKN---IIFIACGSTYSAALS--------ASGELYTWGRGNYGRLGHGS 597
Query: 165 TQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
VP V L ++ +V V CG T V+++G V+SWG
Sbjct: 598 NDDVTVPTLVTTLKGHM-VVHVACGSGDSQTLCVTASGIVFSWG---------------- 640
Query: 223 EAGDAISPILISGNGPHGPKFQDP------VQVACGAAHTVLVTDDGYKLWSWGRGRSGV 276
GD +G PK D V+V CG + +T G ++++WG+G +
Sbjct: 641 -DGDYGKLGRGGSDGSKTPKIVDKLLDINVVRVFCGGQFSAALTARG-EVYTWGKGDAYR 698
Query: 277 LGTGKTIDFFAPAIVLWPPLTEEF---KQDELNTGG 309
LG G V +P L E K +L+ GG
Sbjct: 699 LGHGNE------EHVRYPKLIESLRDKKIKDLSVGG 728
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 32/210 (15%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y WG N+ GQLG G ++++ P E+ + P + G T
Sbjct: 3935 YGWGHNHRGQLG-GLEGAKIKLPAPCESLSALRPIQL----AGGEQTLFAV-------TA 3982
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVW 203
+ ++ G G G+LG G T S +VP ++ + Q+V++ V+V+ G H +SS G V+
Sbjct: 3983 DGKVYSTGYGAAGRLGIGGTDSVMVPTLLESI-QHVFIKKVAVNSGGKHCLALSSEGHVY 4041
Query: 204 SWGM--EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
SWG + LG S R + + + I I V +ACG H+ +T
Sbjct: 4042 SWGEGDDGKLGHGNRLSYDRPKLVEDLLGIEI-------------VDIACGGHHSAAITS 4088
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ L++WG+GR G LG G + D P +V
Sbjct: 4089 AGW-LYTWGKGRYGRLGHGDSDDQLRPKVV 4117
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G SLA+ G +W WG D G + P+ V G +V VA
Sbjct: 3198 VVQVECGAQFSLALTKYGEVWTWGK---GDYFRLGHGNDHHVRKPTLVEGLRGKKIVHVA 3254
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ G+ Y+WG N++GQ G G +P ++ + +
Sbjct: 3255 VGALHCLAVTDTGQV--------YAWGDNDHGQQGNGTTIVNRKPSLVHELDDTR---MN 3303
Query: 124 EVTCGSFHT 132
V+CGS H+
Sbjct: 3304 RVSCGSSHS 3312
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 78/189 (41%), Gaps = 25/189 (13%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
C + MSL D G ++ WG+ D G +TP V +G VV+V C
Sbjct: 3149 CGSRDAQTMSLTAD--GCVYTWGD---GDFGKLGRGGSDGCYTPLLVDRLNGLGVVQVEC 3203
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G++ +AL GE ++WG + +LG G+ +P ++E +
Sbjct: 3204 GAQFSLALTKYGEV--------WTWGKGDYFRLGHGNDHHVRKPTLVEGLRGKK---IVH 3252
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
V G+ H +T D + W G ++GQ G+GTT P V EL +
Sbjct: 3253 VAVGALHCLAVT------DTGQVYAW--GDNDHGQQGNGTTIVNRKPSLVHELDD-TRMN 3303
Query: 185 SVDCGLFHT 193
V CG H+
Sbjct: 3304 RVSCGSSHS 3312
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G + LA+ + G ++ WG+ D +G + + + PS V + + +V
Sbjct: 3249 KIVHVAVGALHCLAVTDTGQVYAWGD---NDHGQQGNGTTIVNRKPSLVHELDDTRMNRV 3305
Query: 63 ACGSEHVVALVSAGETYKG-EDLVCYSWGANNNGQLGLG 100
+CGS H +A + + G ++ V + + GQ+ LG
Sbjct: 3306 SCGSSHSIAWILVDQPTNGNQEPVTFQTARDPLGQMCLG 3344
>gi|348688336|gb|EGZ28150.1| hypothetical protein PHYSODRAFT_321832 [Phytophthora sojae]
Length = 423
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 126/287 (43%), Gaps = 49/287 (17%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHG---HTVVKVA 63
V GG S A+ N G L+MWG F P G +VVKV+
Sbjct: 112 VSCGGCHSAAVTNDGTLYMWGETHWGQLGLPKEFEAAHESFPVKCPLLEGVADESVVKVS 171
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-------DRESRL---RPKIIET 113
CG H AL + G Y WG ++GQLG+G D L RP ++E
Sbjct: 172 CGGTHTAALTNLGRVY--------VWGRGDSGQLGIGSAWLKDTDDNGLLGVSRPHLVEG 223
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
FN + V +V CG+FH+A +T + + +G + G LG G T P++
Sbjct: 224 FNGEK---VVQVACGAFHSAAVTE--------QGHVYIWGKEDYGMLGVGQTSDQQTPKR 272
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPI 231
V E + + V CG +HT VV+ +GD +++G E G LGL S TR A+
Sbjct: 273 V-EFFDDIPALRVSCGGWHTMVVAKSGDCYAFGRGEYGRLGLGDTKSRTRPHLVKAL--- 328
Query: 232 LISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
K Q +Q ACG +HT+ VT DG + GR G LG
Sbjct: 329 ----------KGQTVIQAACGGSHTLFVTSDGIA-YVAGRPDHGRLG 364
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 118/253 (46%), Gaps = 24/253 (9%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
+S P + G +V V+CGS H +AL ++G YSWG + GQLG GD +
Sbjct: 40 ASNFPKQLGGLLGEEIVAVSCGSRHTMALTASGAV--------YSWGWGSMGQLGHGDLK 91
Query: 104 SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
S P+ I F Q+ Y V+CG H+A +T+ E+ GL + + H
Sbjct: 92 SINVPQKIAFFEQEGLKVDY-VSCGGCHSAAVTNDGTLYMWGETHWGQLGLPKEFEAAH- 149
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASL 219
+S V + E +V V CG HT+ +++ G V+ WG + G+G
Sbjct: 150 --ESFPVKCPLLEGVADESVVKVSCGGTHTAALTNLGRVYVWGRGDSGQLGIGSAWLKDT 207
Query: 220 TRNEAGDAISPILISG-NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
N P L+ G NG + VQVACGA H+ VT+ G+ ++ WG+ G+LG
Sbjct: 208 DDNGLLGVSRPHLVEGFNG------EKVVQVACGAFHSAAVTEQGH-VYIWGKEDYGMLG 260
Query: 279 TGKTIDFFAPAIV 291
G+T D P V
Sbjct: 261 VGQTSDQQTPKRV 273
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 132/314 (42%), Gaps = 67/314 (21%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFH--GHTVV 60
+I +V G ++A+ +GA++ WG + G L S P + F G V
Sbjct: 54 EIVAVSCGSRHTMALTASGAVYSWGWGSM---GQLGHGDLKSINVPQKIAFFEQEGLKVD 110
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V+CG H A+ + D Y WG + GQLGL PK E ++ P
Sbjct: 111 YVSCGGCHSAAVTN--------DGTLYMWGETHWGQLGL--------PKEFEAAHESFPV 154
Query: 121 -----------AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG------ 163
+V +V+CG HTA LT+ R + +G G++GQLG G
Sbjct: 155 KCPLLEGVADESVVKVSCGGTHTAALTNLGR--------VYVWGRGDSGQLGIGSAWLKD 206
Query: 164 TTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
T + L+ L + +V V CG FH++ V+ G V+ WG E L
Sbjct: 207 TDDNGLLGVSRPHLVEGFNGEKVVQVACGAFHSAAVTEQGHVYIWGKED------YGMLG 260
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPV---QVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
+ D +P + +F D + +V+CG HT++V G +++GRG G L
Sbjct: 261 VGQTSDQQTPKRV--------EFFDDIPALRVSCGGWHTMVVAKSG-DCYAFGRGEYGRL 311
Query: 278 GTGKTIDFFAPAIV 291
G G T P +V
Sbjct: 312 GLGDTKSRTRPHLV 325
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 107/233 (45%), Gaps = 32/233 (13%)
Query: 88 SWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA--------VYEVTCGSFHTALLTHRK 139
++G N++GQLG G + R I + + P + V+CGS HT LT
Sbjct: 14 AFGCNDDGQLGTGAKR-RPTLAIDDVSASNFPKQLGGLLGEEIVAVSCGSRHTMALT--- 69
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS-VDCGLFHTSVVSS 198
+++G G GQLGHG +S VP+++ Q V V CG H++ V++
Sbjct: 70 -----ASGAVYSWGWGSMGQLGHGDLKSINVPQKIAFFEQEGLKVDYVSCGGCHSAAVTN 124
Query: 199 AGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHT 256
G ++ WG LGL P +E+ P+L G + V+V+CG HT
Sbjct: 125 DGTLYMWGETHWGQLGL-PKEFEAAHESFPVKCPLL------EGVADESVVKVSCGGTHT 177
Query: 257 VLVTDDGYKLWSWGRGRSGVLGTG----KTIDFFAPAIVLWPPLTEEFKQDEL 305
+T+ G +++ WGRG SG LG G K D V P L E F +++
Sbjct: 178 AALTNLG-RVYVWGRGDSGQLGIGSAWLKDTDDNGLLGVSRPHLVEGFNGEKV 229
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 22/183 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G S A+ G +++WG D G TP V F ++V
Sbjct: 228 KVVQVACGAFHSAAVTEQGHVYIWGK---EDYGMLGVGQTSDQQTPKRVEFFDDIPALRV 284
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+CG H + + +G+ CY++G G+LGLGD +SR RP +++ + V
Sbjct: 285 SCGGWHTMVVAKSGD--------CYAFGRGEYGRLGLGDTKSRTRPHLVKALKGQT---V 333
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HT +T + + + G ++G+LG + VP ++ P V
Sbjct: 334 IQAACGGSHTLFVTS--------DGIAYVAGRPDHGRLGMTDMKPLSVPTRLDLGPIPVR 385
Query: 183 LVS 185
VS
Sbjct: 386 QVS 388
>gi|281205822|gb|EFA80011.1| regulator of chromosome condensation domain-containing protein
[Polysphondylium pallidum PN500]
Length = 1800
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 157/381 (41%), Gaps = 90/381 (23%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFS---LVSSFTPSPVWDFH-GH 57
S I + GG S+A+D + ++ WG SS G L P + DF G
Sbjct: 1086 SPIIMISCGGEHSVAVDQSFQIYSWG------SSRYGQLGHGVLTPQNLPKKIEDFTGGQ 1139
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+ +A G H + L +G DL + W N++GQLGLG+ ++R P IET
Sbjct: 1140 KVLAIATGYAHTMVLKKSG------DLFTFGW--NDSGQLGLGNFKNRAVPMRIETSEIV 1191
Query: 118 SPWA--VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
+ + G H+ + + +++G GQLGHG + +L P+Q+
Sbjct: 1192 GIHGERITAIAAGHSHSIMC--------LDNGDIYSWGANSKGQLGHGNIEKSLRPKQID 1243
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG----------------------------M 207
EL ++ + CG FHT +S V+ WG +
Sbjct: 1244 ELKGKP-IIKISCGHFHTVAISELNSVYCWGQGEHMCLGNGSNKNELSPKMIEFFINKKI 1302
Query: 208 EKGL-GLCPNASLTRNEAGDAISPILISGNGPHG----------PKFQDP---------- 246
EK + GL A++T E G + I G G HG P F P
Sbjct: 1303 EKVVCGLYHTATVTAAENGSDRGNVYICGGGEHGKLGTGGDLKTPFFDKPHPAVIPSLNS 1362
Query: 247 ---VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA--------IVLWPP 295
V + G+ + ++T++G L++WG G G +G GKT D + P +L+
Sbjct: 1363 MNIVGFSSGSEFSAIITNNG-ALYTWGYGNFGQIGNGKTEDMWLPTKISLNDQRFMLFNQ 1421
Query: 296 LTEEFKQDELNTGGLDDEIKT 316
++ F + + GL+D +K+
Sbjct: 1422 NSKGFAKARYSQEGLEDVLKS 1442
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 115/242 (47%), Gaps = 38/242 (15%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P P + V VACG EH+ + S GE ++WG N+ GQLG G +
Sbjct: 1021 LNPMPPLVKNEKKAVSVACGWEHIAVISSDGE--------LFTWGNNSQGQLGHGLNVGK 1072
Query: 106 LR--PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
+ P+ +ETF + SP + ++CG H+ + + +++G GQLGHG
Sbjct: 1073 YQSTPRRVETF-KSSP--IIMISCGGEHSVAVDQSFQ--------IYSWGSSRYGQLGHG 1121
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASL 219
+P+++++ ++++ G HT V+ +GD++++G + GLG N ++
Sbjct: 1122 VLTPQNLPKKIEDFTGGQKVLAIATGYAHTMVLKKSGDLFTFGWNDSGQLGLGNFKNRAV 1181
Query: 220 -TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
R E + + G HG + +A G +H+++ D+G ++SWG G LG
Sbjct: 1182 PMRIETSEIV--------GIHGERI---TAIAAGHSHSIMCLDNG-DIYSWGANSKGQLG 1229
Query: 279 TG 280
G
Sbjct: 1230 HG 1231
>gi|428166922|gb|EKX35889.1| hypothetical protein GUITHDRAFT_40307, partial [Guillardia theta
CCMP2712]
Length = 277
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 118/240 (49%), Gaps = 39/240 (16%)
Query: 47 TPSPVWDFHGHTVVKVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+P P+ G VV VACG +H A+ G+ Y +WG+ +GQLG GD
Sbjct: 21 SPCPIIALQGLLVVSVACGGGSEEQHSAAVTEQGQVY--------TWGSGKSGQLGHGDS 72
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
++ + P++I Q +P + EV CGS HT +++ + + +G G GQLG
Sbjct: 73 QNLVLPRLIVGL-QSNP--IVEVACGSAHTVVVSK--------AGLVFAWGWGHFGQLGV 121
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLT 220
G+T ++ P QV L V + V CG HT+VV+ +G V W WG+ LG +AS +
Sbjct: 122 GSTHNSNDPVQVTSLDG-VKVCKVACGSAHTAVVTESGHVYTWGWGVNGQLGHGDDASQS 180
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
R + I +S +ACG AHTV+V++ ++SWG G LG G
Sbjct: 181 RPMYVKKLHGIYVS-------------TLACGLAHTVVVSEVDRAVFSWGWDEYGQLGHG 227
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 103/211 (48%), Gaps = 32/211 (15%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF----HTALLTHRKRPN 142
+SWG NN+G LGLG ++ P I V V CG H+A +T + +
Sbjct: 1 FSWGFNNDGALGLGTTDAVGSPCPIIALQ---GLLVVSVACGGGSEEQHSAAVTEQGQ-- 55
Query: 143 DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV 202
+T+G G++GQLGHG +Q+ ++P + L Q +V V CG HT VVS AG V
Sbjct: 56 ------VYTWGSGKSGQLGHGDSQNLVLPRLIVGL-QSNPIVEVACGSAHTVVVSKAGLV 108
Query: 203 --WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT 260
W WG LG+ + + + D + + G +VACG+AHT +VT
Sbjct: 109 FAWGWGHFGQLGVG-----STHNSNDPVQVTSLDG--------VKVCKVACGSAHTAVVT 155
Query: 261 DDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ G+ +++WG G +G LG G P V
Sbjct: 156 ESGH-VYTWGWGVNGQLGHGDDASQSRPMYV 185
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 91/211 (43%), Gaps = 32/211 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I V G ++ + AG ++ WG G S +S P V G V KVA
Sbjct: 89 IVEVACGSAHTVVVSKAGLVFAWG---WGHFGQLGVGSTHNSNDPVQVTSLDGVKVCKVA 145
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CGS H + +G Y+WG NGQLG GD S+ RP ++ + V
Sbjct: 146 CGSAHTAVVTESGHV--------YTWGWGVNGQLGHGDDASQSRPMYVKKLHGIY---VS 194
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG-----TTQSALVPEQVKELP 178
+ CG HT +++ R +++G E GQLGHG P +K+L
Sbjct: 195 TLACGLAHTVVVSEVDRA-------VFSWGWDEYGQLGHGGWDIFGGNKNRSPRPIKDLQ 247
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
Q + CG +T +SS GDV+++G K
Sbjct: 248 Q------IACGSSYTLALSSRGDVYAFGWGK 272
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 66/168 (39%), Gaps = 39/168 (23%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++C V G + + +G ++ WG N L S P V HG V
Sbjct: 140 KVCKVACGSAHTAVVTESGHVYTWGWGVNGQLGHGDD------ASQSRPMYVKKLHGIYV 193
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG------LGDRESRLRPKIIET 113
+ACG H V + D +SWG + GQLG G ++R P+ I+
Sbjct: 194 STLACGLAHTVVVSEV-------DRAVFSWGWDEYGQLGHGGWDIFGGNKNR-SPRPIKD 245
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
Q + CGS +T L+ R + FG G++GQLG
Sbjct: 246 LQQ--------IACGSSYTLALSSRGD--------VYAFGWGKDGQLG 277
>gi|444914429|ref|ZP_21234572.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
gi|444714661|gb|ELW55540.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
Length = 648
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 129/288 (44%), Gaps = 43/288 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ +V AGG+ SLA+ + G LW WG+ D G S V + V G VV +A
Sbjct: 251 VMAVAAGGLYSLALRSDGTLWAWGSN---DHGQRGDGSTVYLSSSVRVRWLSG--VVAMA 305
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H +A+ S D ++WGAN GQLG G R+ PK ++ ++ V
Sbjct: 306 AGSAHSLAVRS--------DGTLWAWGANYYGQLGDGTRKDHDTPKRVQGLSR-----VV 352
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
V G H+ L + WT+G +GQL HG+T + VP V+EL +
Sbjct: 353 AVAAGDGHSIALC--------ADGTVWTWGYNHDGQLAHGSTNDSPVPLHVRELSG---V 401
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
V+V G H+ V S G VW+WG + G + SL+ + P+ + G
Sbjct: 402 VAVAAGALHSLAVLSDGSVWAWGYNR-QGQLGDGSLS-----SSAEPVRVQG-------L 448
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V+ G H++ DG +W+WG G LG G T + P V
Sbjct: 449 SGVAAVSAGLNHSLARGTDG-GVWAWGGNSFGQLGEGTTSNALVPVRV 495
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 122/280 (43%), Gaps = 43/280 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + +V AG + SLA+ + G++W WG G SL SS P V G V
Sbjct: 398 LSGVVAVAAGALHSLAVLSDGSVWAWG---YNRQGQLGDGSLSSSAEPVRVQGLSG--VA 452
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V+ G H +A +G D ++WG N+ GQLG G + L P + +
Sbjct: 453 AVSAGLNHSLA--------RGTDGGVWAWGGNSFGQLGEGTTSNALVPVRVRGLS----- 499
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++ G H+ R +D W +G GQLG GTT ++ VP +V+ L
Sbjct: 500 GVETISAGFNHS-----LARASD---GGLWAWGGNYTGQLGDGTTSNSSVPVRVQGLSG- 550
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ +V GL H+ V + G VW+WG+ L + +P+ + G
Sbjct: 551 --VAAVFAGLNHSLAVRTDGSVWAWGINS------FGQLGEGTTNTSFAPVRVQG----- 597
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
VA G+ H++ V DG +WSWG G LG G
Sbjct: 598 --LSGMETVAAGSLHSLSVGSDG-SMWSWGNNHHGQLGHG 634
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 128/298 (42%), Gaps = 57/298 (19%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S++ +V AG S+A+ G +W WG + L ST S P V + G
Sbjct: 348 LSRVVAVAAGDGHSIALCADGTVWTWGYNHDGQLAHGSTN------DSPVPLHVRELSG- 400
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV VA G+ H +A++S G ++WG N GQLG G S P ++ +
Sbjct: 401 -VVAVAAGALHSLAVLSDGS--------VWAWGYNRQGQLGDGSLSSSAEPVRVQGLS-- 449
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V V+ G H+ R D W +G GQLG GTT +ALVP +V+ L
Sbjct: 450 ---GVAAVSAGLNHS-----LARGTD---GGVWAWGGNSFGQLGEGTTSNALVPVRVRGL 498
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG----MEKGLGLCPNASLTRNEAGDAISPILI 233
+ ++ G H+ +S G +W+WG + G G N+S+ P+ +
Sbjct: 499 SG---VETISAGFNHSLARASDGGLWAWGGNYTGQLGDGTTSNSSV----------PVRV 545
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G V G H++ V DG +W+WG G LG G T FAP V
Sbjct: 546 QG-------LSGVAAVFAGLNHSLAVRTDG-SVWAWGINSFGQLGEGTTNTSFAPVRV 595
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 129/294 (43%), Gaps = 46/294 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT-PSPVWDFHGHTV 59
+S + +V AG SLA+ + G++W WG+ +S GG S++ P + D V
Sbjct: 95 LSGVVAVSAGDNHSLALRSDGSVWAWGDN---NSDQLGGAPGAQSYSVPWRLEDL--SEV 149
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRLRPKIIETFNQDS 118
V VA G H +A+ + D ++WG N GQLG G+ +R PK ++ +
Sbjct: 150 VAVAAGGNHSLAVRA--------DGTVWAWGDNFAGQLGDGNILTTRWLPKQVQGLS--- 198
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS-ALVPEQVKEL 177
V + G H+ + + + W +G +GQLG+G + +PEQV+ L
Sbjct: 199 --GVVAASAGWAHSMVA--------LSDGSVWAWGNNTSGQLGNGISVGYGALPEQVQGL 248
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+++V G ++ + S G +W+WG + GD + L S
Sbjct: 249 RG---VMAVAAGGLYSLALRSDGTLWAWGSND-----------HGQRGDGSTVYLSS--S 292
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V +A G+AH++ V DG LW+WG G LG G D P V
Sbjct: 293 VRVRWLSGVVAMAAGSAHSLAVRSDG-TLWAWGANYYGQLGDGTRKDHDTPKRV 345
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 134/338 (39%), Gaps = 85/338 (25%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHG- 56
+S++ +V AGG SLA+ G +W WG+ L D G L + + P V G
Sbjct: 146 LSEVVAVAAGGNHSLAVRADGTVWAWGDNFAGQLGD-----GNILTTRWLPKQVQGLSGV 200
Query: 57 --------HTVVKVACGS------------------------EHVVAL-----VSAGETY 79
H++V ++ GS E V L V+AG Y
Sbjct: 201 VAASAGWAHSMVALSDGSVWAWGNNTSGQLGNGISVGYGALPEQVQGLRGVMAVAAGGLY 260
Query: 80 K---GEDLVCYSWGANNNGQLGLGDR---ESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
D ++WG+N++GQ G G S +R + + V + GS H+
Sbjct: 261 SLALRSDGTLWAWGSNDHGQRGDGSTVYLSSSVRVRWLS--------GVVAMAAGSAHS- 311
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L R + W +G GQLG GT + P++V+ L + +V+V G H+
Sbjct: 312 -LAVRS------DGTLWAWGANYYGQLGDGTRKDHDTPKRVQGLSR---VVAVAAGDGHS 361
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ + G VW+WG + L D+ P+ H + V VA GA
Sbjct: 362 IALCADGTVWTWGYNH------DGQLAHGSTNDSPVPL-------HVRELSGVVAVAAGA 408
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
H++ V DG +W+WG R G LG G P V
Sbjct: 409 LHSLAVLSDG-SVWAWGYNRQGQLGDGSLSSSAEPVRV 445
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 125/304 (41%), Gaps = 62/304 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S + +V AG SLA+ G +W WG+ L D +++ S P V G
Sbjct: 45 LSGVVAVSAGEGHSLALHRDGTVWAWGDNALGQLGDGTSD------SHSEPVRVPGLSG- 97
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQ 116
VV V+ G H +AL S G ++WG NN+ QLG +S P +E ++
Sbjct: 98 -VVAVSAGDNHSLALRSDGS--------VWAWGDNNSDQLGGAPGAQSYSVPWRLEDLSE 148
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT-QSALVPEQVK 175
V V G H+ L R + W +G GQLG G + +P+QV+
Sbjct: 149 -----VVAVAAGGNHS--LAVRA------DGTVWAWGDNFAGQLGDGNILTTRWLPKQVQ 195
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS------ 229
L +V+ G H+ V S G VW+WG T + G+ IS
Sbjct: 196 GLSG---VVAASAGWAHSMVALSDGSVWAWGNN-----------TSGQLGNGISVGYGAL 241
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA 289
P + G + + VA G +++ + DG LW+WG G G G T+ +
Sbjct: 242 PEQVQG-------LRGVMAVAAGGLYSLALRSDG-TLWAWGSNDHGQRGDGSTVYLSSSV 293
Query: 290 IVLW 293
V W
Sbjct: 294 RVRW 297
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 93/224 (41%), Gaps = 41/224 (18%)
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+A G++H +AL D ++WG N GQLG G +S P + +
Sbjct: 1 MAAGTDHSLALR--------HDGTVWAWGGNALGQLGDGSSDSHSEPVRVRGLS-----G 47
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V V+ G H+ L HR + W +G GQLG GT+ S P +V P
Sbjct: 48 VVAVSAGEGHS-LALHR-------DGTVWAWGDNALGQLGDGTSDSHSEPVRV---PGLS 96
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGNGPH 239
+V+V G H+ + S G VW+WG LG P A P +
Sbjct: 97 GVVAVSAGDNHSLALRSDGSVWAWGDNNSDQLGGAPGAQSYS-------VPWRL------ 143
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
+ V VA G H++ V DG +W+WG +G LG G +
Sbjct: 144 -EDLSEVVAVAAGGNHSLAVRADG-TVWAWGDNFAGQLGDGNIL 185
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 117/285 (41%), Gaps = 49/285 (17%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ AG SLA+ + G +W WG L D S++ S P V G VV V+
Sbjct: 1 MAAGTDHSLALRHDGTVWAWGGNALGQLGDGSSD------SHSEPVRVRGLSG--VVAVS 52
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G H +AL D ++WG N GQLG G +S P + + V
Sbjct: 53 AGEGHSLALH--------RDGTVWAWGDNALGQLGDGTSDSHSEPVRVPGLS-----GVV 99
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG-TTQSALVPEQVKELPQYVY 182
V+ G H+ L + W +G + QLG QS VP ++++L +
Sbjct: 100 AVSAGDNHSLALRS--------DGSVWAWGDNNSDQLGGAPGAQSYSVPWRLEDLSE--- 148
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V+V G H+ V + G VW+WG L LT P + G
Sbjct: 149 VVAVAAGGNHSLAVRADGTVWAWGDNFAGQLGDGNILTTRWL-----PKQVQG------- 196
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
V + G AH+++ DG +W+WG SG LG G ++ + A
Sbjct: 197 LSGVVAASAGWAHSMVALSDG-SVWAWGNNTSGQLGNGISVGYGA 240
>gi|307176782|gb|EFN66182.1| Probable E3 ubiquitin-protein ligase HERC2 [Camponotus floridanus]
Length = 4802
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 134/290 (46%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG D G + +S P + D G ++ +ACG
Sbjct: 4034 AVSSGGKHCLALSSEGHVYSWGE---GDDGKLGHGNKMSYDRPKLIEDLLGVEIIDIACG 4090
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H A+ SAG Y+WG G+LG GD + +LRPK++E QD + V +V
Sbjct: 4091 GHHSAAITSAGW--------LYTWGKGRYGRLGHGDSDDQLRPKVVEAL-QD--YKVIDV 4139
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + VP ++ L + ++
Sbjct: 4140 ACGSGDAQTLCVTDDDN------VWSWGDGDYGKLGRGGSDGCKVPLKIDSLAG-LGVIK 4192
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + + R A+ G
Sbjct: 4193 VECGSQFSVALTRSGAVYTWG--KGDYHRLGHGTDDHVRRPRKVAAL----------QGK 4240
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V +D G ++++WG G LG G T P +V
Sbjct: 4241 KI---ISIATGSLHCVACSDKG-EVFTWGDNDEGQLGDGTTSALHRPRLV 4286
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 129/288 (44%), Gaps = 37/288 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + +S P + + +ACG
Sbjct: 3052 AVHSGGKHALALTQDGKVFSWGE---GEDGKLGHGNNMSLDKPKLIETLKSKRIRDIACG 3108
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S GE Y+WG G+LG GD ++ RPK+++T V +V
Sbjct: 3109 SGHSAAIASNGE--------LYTWGLGEYGRLGHGDTVTQARPKLVQTLVGHR---VVQV 3157
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + +++G G+ G+LG G + P V+ L + +
Sbjct: 3158 ACGSRDAQTMALT--------TDGCVYSWGDGDFGKLGRGGSDGCYTPLVVERL-NGLGV 3208
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
V V+CG + ++ G+VW+WG KG L P L+ G G K
Sbjct: 3209 VQVECGAQFSLALTKYGEVWTWG--KG----DYFRLGHGNDHHVRKPTLV--EGLRGKKI 3260
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P++V
Sbjct: 3261 ---VHVAVGALHCLAVTDTG-QVYAWGDNDHGQQGNGTTSVNRKPSLV 3304
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 125/277 (45%), Gaps = 45/277 (16%)
Query: 22 ALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD--FHGHTVVKVACGSEHVVALVSAGETY 79
A+++WG L D GG L S PV+ + +A GS+ + + G+
Sbjct: 2962 AVYVWG---LNDKDQLGG--LKGSKIKLPVYSEVLSKLKPIHIAGGSKTLFIVSQEGK-- 3014
Query: 80 KGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRK 139
Y+ G NG+LGLGD + PK I +Q V V G H LT
Sbjct: 3015 ------LYACGEGTNGRLGLGDDNNVCEPKPIPFLSQFVIKKV-AVHSGGKHALALTQ-- 3065
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
+ +++G GE+G+LGHG S P+ ++ L + + + CG H++ ++S
Sbjct: 3066 ------DGKVFSWGEGEDGKLGHGNNMSLDKPKLIETL-KSKRIRDIACGSGHSAAIASN 3118
Query: 200 GDVWSWGMEKGLGLCPNASLTRNEAGDAIS---PILISGNGPHGPKFQDPVQVACGA--A 254
G++++WG+ R GD ++ P L+ H VQVACG+ A
Sbjct: 3119 GELYTWGL---------GEYGRLGHGDTVTQARPKLVQTLVGH-----RVVQVACGSRDA 3164
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
T+ +T DG ++SWG G G LG G + + P +V
Sbjct: 3165 QTMALTTDGC-VYSWGDGDFGKLGRGGSDGCYTPLVV 3200
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 106/261 (40%), Gaps = 44/261 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
+I + GG S AI +AG L+ WG +G + + P V
Sbjct: 4083 EIIDIACGGHHSAAITSAGWLYTWG---------KGRYGRLGHGDSDDQLRPKVVEALQD 4133
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+ V+ VACGS L +D +SWG + G+LG G + P I++
Sbjct: 4134 YKVIDVACGSGDAQTLCVT------DDDNVWSWGDGDYGKLGRGGSDGCKVPLKIDSL-- 4185
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ V +V CGS + LT +T+G G+ +LGHGT P +V
Sbjct: 4186 -AGLGVIKVECGSQFSVALTR--------SGAVYTWGKGDYHRLGHGTDDHVRRPRKVAA 4236
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L Q ++S+ G H S G+V++WG + GD + L
Sbjct: 4237 L-QGKKIISIATGSLHCVACSDKGEVFTWGDND-----------EGQLGDGTTSALHRPR 4284
Query: 237 GPHGPKFQDPVQVACGAAHTV 257
H + + +VACG+AHT+
Sbjct: 4285 LVHALQGKKITRVACGSAHTL 4305
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 109/254 (42%), Gaps = 48/254 (18%)
Query: 48 PSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P V F V +A S+ H +AL +D YSWG + G+LG GD S
Sbjct: 498 PQRVHGFSDKLVTMIASHSDGKHHLALT--------QDGCVYSWGNGDGGRLGHGDTVSY 549
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
PK+IE + + + + CGS ++A L+ + +T+G G G+LGHG
Sbjct: 550 DEPKLIEALLEKN---IVFIACGSTYSAALS--------VSGELYTWGRGNYGRLGHGNF 598
Query: 166 QSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE 223
++P V L + +V V CG T V+++G V+SWG
Sbjct: 599 DDVMIPTLVTTLKGHT-VVHVACGSGDSQTLCVTASGIVFSWG----------------- 640
Query: 224 AGDAISPILISGNGPHGPKFQDP------VQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
GD +G PK D V+V CG+ + +T G ++++WG+G + L
Sbjct: 641 DGDYGKLGRGGTDGSKTPKIVDKLLDINVVKVFCGSQFSAALTAHG-EVYTWGKGDTYRL 699
Query: 278 GTGKTIDFFAPAIV 291
G G P I+
Sbjct: 700 GHGSEEHVRYPKII 713
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 27/206 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G S A+ +G L+ WG + G + P+ V GHTVV VA
Sbjct: 563 IVFIACGSTYSAALSVSGELYTWGR---GNYGRLGHGNFDDVMIPTLVTTLKGHTVVHVA 619
Query: 64 CGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
CGS + + ++G + +SWG + G+LG G + PKI++ +
Sbjct: 620 CGSGDSQTLCVTASG--------IVFSWGDGDYGKLGRGGTDGSKTPKIVDKLLDIN--- 668
Query: 122 VYEVTCGS-FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V +V CGS F AL H + +T+G G+ +LGHG+ + P+ ++ L
Sbjct: 669 VVKVFCGSQFSAALTAHGE---------VYTWGKGDTYRLGHGSEEHVRYPKIIESLRDK 719
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ + G H V++ V+ WG
Sbjct: 720 -KIKDLSVGATHILVLTEDQFVYGWG 744
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 30/209 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P E+ + P + G T +
Sbjct: 3946 YGWGHNHRGQLGGLEGPKVKLPAPCESLSALRPIQL----AGGEQTLFAV-------TAD 3994
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
++ G G G+LG G T S ++P ++ + Q+V++ V+V G H +SS G V+S
Sbjct: 3995 GKVYSTGYGAAGRLGIGGTDSVMIPTLLESI-QHVFIKKVAVSSGGKHCLALSSEGHVYS 4053
Query: 205 WGM--EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG + LG S R + + + + I + +ACG H+ +T
Sbjct: 4054 WGEGDDGKLGHGNKMSYDRPKLIEDLLGVEI-------------IDIACGGHHSAAITSA 4100
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ L++WG+GR G LG G + D P +V
Sbjct: 4101 GW-LYTWGKGRYGRLGHGDSDDQLRPKVV 4128
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 30/226 (13%)
Query: 70 VALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCG 128
VA+ + + ++ Y WG N+ QLG G + S+++ P E ++ P + G
Sbjct: 2947 VAVQRSIDATPPQESAVYVWGLNDKDQLG-GLKGSKIKLPVYSEVLSKLKPIHI----AG 3001
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVD 187
T + + E + G G NG+LG G + P+ + L Q+V V+V
Sbjct: 3002 GSKTLFIVSQ-------EGKLYACGEGTNGRLGLGDDNNVCEPKPIPFLSQFVIKKVAVH 3054
Query: 188 CGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
G H ++ G V+SWG E G LG N SL + P LI + +D
Sbjct: 3055 SGGKHALALTQDGKVFSWGEGEDGKLGHGNNMSLDK--------PKLI--ETLKSKRIRD 3104
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ACG+ H+ + +G +L++WG G G LG G T+ P +V
Sbjct: 3105 ---IACGSGHSAAIASNG-ELYTWGLGEYGRLGHGDTVTQARPKLV 3146
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 89/237 (37%), Gaps = 61/237 (25%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S AI + G L+ WG L + G V+ P V GH VV+V
Sbjct: 3101 RIRDIACGSGHSAAIASNGELYTWG---LGEYGRLGHGDTVTQARPKLVQTLVGHRVVQV 3157
Query: 63 ACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
ACGS +AL + G YSWG + G+LG G + P ++E N
Sbjct: 3158 ACGSRDAQTMALTTDG--------CVYSWGDGDFGKLGRGGSDGCYTPLVVERLNG---L 3206
Query: 121 AVYEVTCGSFHTALLT---------------------HRKRPNDMLESM----------- 148
V +V CG+ + LT H R ++E +
Sbjct: 3207 GVVQVECGAQFSLALTKYGEVWTWGKGDYFRLGHGNDHHVRKPTLVEGLRGKKIVHVAVG 3266
Query: 149 ------------CWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
+ +G ++GQ G+GTT P V EL + + V CG H+
Sbjct: 3267 ALHCLAVTDTGQVYAWGDNDHGQQGNGTTSVNRKPSLVHEL-EDARVNRVSCGSSHS 3322
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G + LA+ + G ++ WG+ D +G + + PS V + V +V
Sbjct: 3259 KIVHVAVGALHCLAVTDTGQVYAWGD---NDHGQQGNGTTSVNRKPSLVHELEDARVNRV 3315
Query: 63 ACGSEHVVALVSAGETYKG-EDLVCYSWGANNNGQLGLG 100
+CGS H +A V + G ++ V + + GQ+ LG
Sbjct: 3316 SCGSSHSIAWVLVDQPSSGNQEPVTFPTARDPLGQMCLG 3354
>gi|325181521|emb|CCA15971.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 6906
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 125/266 (46%), Gaps = 38/266 (14%)
Query: 46 FTPSPVWDFHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
PSP+ G + VA G EH++A+ D YSWG N+ GQLGLG
Sbjct: 3208 IVPSPIPALSGIPITMVAASNGCEHMLAI--------SHDGAVYSWGYNDRGQLGLGTTV 3259
Query: 104 SRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
S+ P++IE+ + + + H+A++++ D+L TFG+ ++GQLG
Sbjct: 3260 SKSHTPRVIESLREK--YFITFAAVSYHHSAVVSNN---GDLL-----TFGMNDSGQLGL 3309
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLT 220
TQ P+ V+ L + V CGL+HT + GDV+S+G + LGL S T
Sbjct: 3310 DHTQHQHTPQLVETLSSQ-KVGRVACGLYHTVAIVDDGDVYSFGKNEYGQLGL----SHT 3364
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+N + I + P VQV CG HTV + + G K+ +WGR G LG G
Sbjct: 3365 QNTKVPMLVKIPPAPRTPMLDAVNKAVQVYCGYYHTVTILECG-KVVTWGRNDYGQLGIG 3423
Query: 281 ----KTIDFFAPAIVLWPPLTEEFKQ 302
K+I F P PLT K+
Sbjct: 3424 SKEHKSIAQFVPL-----PLTSRVKR 3444
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 117/282 (41%), Gaps = 64/282 (22%)
Query: 50 PVWDFHGHTV--VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+ H V + + G EH++A+ G + YSWG N+ GQLG + ++L
Sbjct: 427 PIQALRSHRVKYINASNGCEHLIAITDTG--------LAYSWGYNDRGQLGHENVGTKLY 478
Query: 108 -PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
PK+IE+ + + H+AL++ + +TFG+ + GQLG TQ
Sbjct: 479 LPKLIESIKEKK---MKSAAVSYHHSALVS--------VSGELYTFGMNDCGQLGLDHTQ 527
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG---------- 212
P+ VK L + ++ V CGL+H + + +G+V++ G + GLG
Sbjct: 528 HQSTPQLVKALLGH-HVSMVSCGLYHMVLCTISGEVFTCGKNDHGQLGLGHNKQVKVPTQ 586
Query: 213 -LCPNA----------------------SLTRNEAGDAISPILISGNGPHGPKFQDP--- 246
+ PN S RN+ G I N P
Sbjct: 587 VVLPNELVCFVACGYYHATAITSTGLTYSFGRNDYGQLGIGSKIHQNIPIALTISSNTRM 646
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
V ACG HT+L++D G +++ +GR G LG D P
Sbjct: 647 VHAACGCYHTLLMSDSG-QVFVFGRNNKGQLGNRGNTDSLLP 687
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 116/257 (45%), Gaps = 35/257 (13%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL-RPKIIE 112
F ++ +A G+E +V L+ G ++ G N +GQ G+G+ + RL P I
Sbjct: 3163 FSYKSIQSIAGGNEVLVVLMKDG--------AVFTCGLNKSGQCGIGNFDERLIVPSPIP 3214
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS-ALVP 171
+ P + + G H ++H + +++G + GQLG GTT S + P
Sbjct: 3215 ALS-GIPITMVAASNGCEHMLAISH--------DGAVYSWGYNDRGQLGLGTTVSKSHTP 3265
Query: 172 EQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAIS 229
++ L + ++ H++VVS+ GD+ ++GM LGL T+++ +
Sbjct: 3266 RVIESLREKYFITFAAVSYHHSAVVSNNGDLLTFGMNDSGQLGL----DHTQHQHTPQLV 3321
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA 289
L S Q +VACG HTV + DDG ++S+G+ G LG T + P
Sbjct: 3322 ETLSS---------QKVGRVACGLYHTVAIVDDG-DVYSFGKNEYGQLGLSHTQNTKVPM 3371
Query: 290 IVLWPPLTEEFKQDELN 306
+V PP D +N
Sbjct: 3372 LVKIPPAPRTPMLDAVN 3388
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 21/160 (13%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
TP V GH V V+CG H+V +GE ++ G N++GQLGLG +
Sbjct: 531 TPQLVKALLGHHVSMVSCGLYHMVLCTISGEV--------FTCGKNDHGQLGLGHNKQVK 582
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P + N+ V V CG +H +T + ++FG + GQLG G+
Sbjct: 583 VPTQVVLPNE----LVCFVACGYYHATAITS--------TGLTYSFGRNDYGQLGIGSKI 630
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+P + + +V CG +HT ++S +G V+ +G
Sbjct: 631 HQNIPIALT-ISSNTRMVHAACGCYHTLLMSDSGQVFVFG 669
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 82/199 (41%), Gaps = 26/199 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S + N G L +G + DS G TP V V +VACG H VA+V
Sbjct: 3287 SAVVSNNGDLLTFG---MNDSGQLGLDHTQHQHTPQLVETLSSQKVGRVACGLYHTVAIV 3343
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE------TFNQDSPWAVYEVTC 127
G+ YS+G N GQLGL ++ P +++ T D+ +V C
Sbjct: 3344 DDGDV--------YSFGKNEYGQLGLSHTQNTKVPMLVKIPPAPRTPMLDAVNKAVQVYC 3395
Query: 128 GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVD 187
G +HT + + T+G + GQLG G+ + + + V LP +
Sbjct: 3396 GYYHTVTILECGK--------VVTWGRNDYGQLGIGSKEHKSIAQFVP-LPLTSRVKRAS 3446
Query: 188 CGLFHTSVVSSAGDVWSWG 206
CG +HT ++ G +G
Sbjct: 3447 CGCYHTLLLLVNGRPMVFG 3465
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 102/248 (41%), Gaps = 29/248 (11%)
Query: 53 DFHGHTVVKVA-CGSEHVVALVSAGETYK--GEDLVCYSWGANNNGQLGLGDRESR---L 106
D H + V CG +H+ +VS E D V + G N +GQ G G+ + R L
Sbjct: 366 DIERHQLTSVPLCGWDHIRQVVSGNEILAILTSDGVVLTCGLNKSGQCGHGNFDERVMLL 425
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
RP I+ + + G H +T + +++G + GQLGH
Sbjct: 426 RP--IQALRSHRVKYI-NASNGCEHLIAITD--------TGLAYSWGYNDRGQLGHENVG 474
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD 226
+ L ++ E + + S H+++VS +G+++++GM C L +
Sbjct: 475 TKLYLPKLIESIKEKKMKSAAVSYHHSALVSVSGELYTFGMND----CGQLGLDHTQHQS 530
Query: 227 AISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFF 286
+P L+ H V+CG H VL T G ++++ G+ G LG G
Sbjct: 531 --TPQLVKALLGHHVSM-----VSCGLYHMVLCTISG-EVFTCGKNDHGQLGLGHNKQVK 582
Query: 287 APAIVLWP 294
P V+ P
Sbjct: 583 VPTQVVLP 590
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V VACG H A+ S G TY S+G N+ GQLG+G S++ I S
Sbjct: 594 VCFVACGYYHATAITSTGLTY--------SFGRNDYGQLGIG---SKIHQNIPIALTISS 642
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH-GTTQSAL-VPEQVKE 176
+ CG +HT L++ + FG GQLG+ G T S L VP +V+
Sbjct: 643 NTRMVHAACGCYHTLLMSD--------SGQVFVFGRNNKGQLGNRGNTDSLLPVPLKVRP 694
Query: 177 LPQYVYLVSVDCGLFHTSVV 196
+ + G + TS++
Sbjct: 695 EKNMRRCLHIAAGFYTTSLI 714
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 19/102 (18%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V+V CG H V ++ G+ +WG N+ GQLG+G +E + I +
Sbjct: 3391 VQVYCGYYHTVTILECGKVV--------TWGRNDYGQLGIGSKEHK---SIAQFVPLPLT 3439
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
V +CG +HT LL RP FG GQLG
Sbjct: 3440 SRVKRASCGCYHTLLLLVNGRP--------MVFGRNNKGQLG 3473
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 11/140 (7%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+C V G + AI + G + +G D G S + P + +V A
Sbjct: 594 VCFVACGYYHATAITSTGLTYSFGR---NDYGQLGIGSKIHQNIPIALTISSNTRMVHAA 650
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H + + +G+ + +G NN GQLG L P ++ + +
Sbjct: 651 CGCYHTLLMSDSGQVF--------VFGRNNKGQLGNRGNTDSLLPVPLKVRPEKNMRRCL 702
Query: 124 EVTCGSFHTALLTHRKRPND 143
+ G + T+L+ RKR ND
Sbjct: 703 HIAAGFYTTSLIVERKREND 722
>gi|452823021|gb|EME30035.1| E3 ubiquitin-protein ligase HERC2 [Galdieria sulphuraria]
Length = 432
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 125/290 (43%), Gaps = 45/290 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVK 61
I V GG AID G L+ WG S+ GG V F P + D V+
Sbjct: 144 NIVKVSIGGNHMAAIDKDGHLYCWGRAA---SAGSGGTEHV--FIPRLIKGDLEKEKVIS 198
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
V+CG H A+ GE + +WG G+LG G++ S+ +PK +++ +
Sbjct: 199 VSCGRSHTAAVTEKGEVW--------TWGNGYEGELGHGEKNSQYQPKKVQSLTEK---- 246
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V +V CG T + ES ++ G + GQLG G + + + L
Sbjct: 247 VVDVACGRDFTIFVC---------ESGLYSCGADDYGQLGLGRSHGERFVQTPRSLSGTG 297
Query: 182 Y--LVSVDCGLFHTSVVSSAGDVWSWGM--EKGLGLCPNASLTRNEAGDAISPILISGNG 237
+V++ G +H + G V++WG+ E LG A + + D + I
Sbjct: 298 LSDVVAISAGDYHVCALGRDGLVYTWGLGREGQLGHGEKADCSLAKPVDNLRNFEI---- 353
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
VQVACG HT VT DG L++WGRGR G LG G ++ A
Sbjct: 354 ---------VQVACGGGHTAAVTKDGV-LYTWGRGRDGQLGRGGELESIA 393
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 93/235 (39%), Gaps = 35/235 (14%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P PV G +V VA G A+ G+ Y +WG+ G+LG D +
Sbjct: 82 PFPVEALSGKRIVYVAAGDSCTAAISLDGDVY--------TWGSGEYGKLGHNDDSNENL 133
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
P+++E + + +V+ G H A + CW G G G T+
Sbjct: 134 PRLVEALKGKN---IVKVSIGGNHMAAIDKDGHL------YCW----GRAASAGSGGTEH 180
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDA 227
+P +K + ++SV CG HT+ V+ G+VW+WG L E
Sbjct: 181 VFIPRLIKGDLEKEKVISVSCGRSHTAAVTEKGEVWTWGNGY------EGELGHGEKNSQ 234
Query: 228 ISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
P + + V VACG T+ V + G L+S G G LG G++
Sbjct: 235 YQPKKVQ------SLTEKVVDVACGRDFTIFVCESG--LYSCGADDYGQLGLGRS 281
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 93/212 (43%), Gaps = 27/212 (12%)
Query: 88 SWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLES 147
++G N GQLG G RP +E S + V G TA ++ L+
Sbjct: 62 TFGLNLIGQLGQGHERPADRPFPVEAL---SGKRIVYVAAGDSCTAAIS--------LDG 110
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM 207
+T+G GE G+LGH + +P V+ L + +V V G H + + G ++ WG
Sbjct: 111 DVYTWGSGEYGKLGHNDDSNENLPRLVEAL-KGKNIVKVSIGGNHMAAIDKDGHLYCWGR 169
Query: 208 EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLW 267
AS P LI G+ + + + V+CG +HT VT+ G ++W
Sbjct: 170 A--------ASAGSGGTEHVFIPRLIKGD----LEKEKVISVSCGRSHTAAVTEKG-EVW 216
Query: 268 SWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
+WG G G LG G+ + P V LTE+
Sbjct: 217 TWGNGYEGELGHGEKNSQYQPKKV--QSLTEK 246
>gi|328873771|gb|EGG22137.1| regulator of chromosome condensation domain-containing protein
[Dictyostelium fasciculatum]
Length = 1859
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 135/294 (45%), Gaps = 44/294 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPL--PDSSTEGGFSLVSSFTPSPVWDFHGHT 58
+ +ICS+ G S A+ G ++MWG + P ST G SL P+ V
Sbjct: 623 IPEICSISCGSYYSAALTENGDVYMWGRGSVKNPPLSTLGNGSLEDQLLPTKVESL--SE 680
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV V+ G H AL S GE +WG +GQLG GD ++ PK+++T S
Sbjct: 681 VVLVSIGYYHSAALKSNGE--------LLTWGCGEDGQLGHGDVLNQTIPKVVQTMT--S 730
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
W V +V CG HT LT + +T+G E GQLG G TQ P V L
Sbjct: 731 HW-VTQVQCGEKHTICLTKNGK--------VFTWGTSEYGQLGLGDTQKNCTPMLVTSLE 781
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS-PILISGNG 237
+Y ++ + CG H +V+++A +V +G +G + + IS P+++
Sbjct: 782 KY-NIIQIACGSTHCAVLTNAREVLVFGNGAAMG-----------SANIISVPMMVP--- 826
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +++CG T +T+ G +++WG G+ LG G P +V
Sbjct: 827 --ALKHLNIERLSCGHYSTAALTECG-DVYTWGSGQE--LGHGTNQSELHPKLV 875
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 131/286 (45%), Gaps = 53/286 (18%)
Query: 17 IDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+D + WG NC L TEG S TP + +F+ + ++CGS + AL
Sbjct: 584 LDTQRGIMTWGSSSNCKL-GFKTEGREQ--SQATPERLPNFNIPEICSISCGSYYSAALT 640
Query: 74 SAGETYKGEDLVCYSWGANNN---GQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF 130
G+ Y + G+ N LG G E +L P +E+ ++ V V+ G +
Sbjct: 641 ENGDVY------MWGRGSVKNPPLSTLGNGSLEDQLLPTKVESLSE-----VVLVSIGYY 689
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
H+A L K ++L T+G GE+GQLGHG + +P+ V+ + + ++ V CG
Sbjct: 690 HSAAL---KSNGELL-----TWGCGEDGQLGHGDVLNQTIPKVVQTMTSH-WVTQVQCGE 740
Query: 191 FHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 246
HT ++ G V++WG + GLG + +P+L++ + +
Sbjct: 741 KHTICLTKNGKVFTWGTSEYGQLGLG----------DTQKNCTPMLVTSLEKY-----NI 785
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID--FFAPAI 290
+Q+ACG+ H ++T + ++ +G G +G+ I PA+
Sbjct: 786 IQIACGSTHCAVLT-NAREVLVFGNG--AAMGSANIISVPMMVPAL 828
>gi|338534909|ref|YP_004668243.1| RCC1 repeat-containing protein [Myxococcus fulvus HW-1]
gi|337261005|gb|AEI67165.1| RCC1 repeat-containing protein [Myxococcus fulvus HW-1]
Length = 862
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 122/294 (41%), Gaps = 49/294 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + ++ AG +LA GA+W WG L D +T +P V G
Sbjct: 559 LAGVTAIAAGSAHTLAAGQDGAVWSWGANSYGQLGDGTT------THRLSPVQVPGLTG- 611
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V +A G H VAL+ +D +WG N+ GQLG G +RL P +
Sbjct: 612 -VSAMAAGDAHSVALL--------QDGTVSAWGRNSWGQLGDGTTAARLTPVQVHGLT-- 660
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V V GS HT L + W +G + GQLG GTT L P QV+ L
Sbjct: 661 ---GVTAVAAGSLHTVALRQ--------DGTVWAWGYNDLGQLGDGTTTRRLAPVQVQGL 709
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ ++ G FHT V G VW+WG L +S R+ +P+ +
Sbjct: 710 TD---VTAIAAGYFHTVAVRQDGTVWAWGYNLWGQLGDGSSTARS------TPVQVQ--- 757
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +A G AHTV V DG +W+WG LG G + D + P V
Sbjct: 758 ----ELTGVSALAAGYAHTVAVKQDG-TVWAWGNNSGTQLGNGSSTDRYTPVWV 806
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 123/298 (41%), Gaps = 45/298 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ AG +LA+ G +W WGN L G + TP V G V
Sbjct: 206 LTGVTAIAAGDYHTLAVRQDGTVWAWGNNAL---GQLGDGTYTERLTPVQVPGLTG--VT 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++ G H VA+ +D ++WG N GQLG G R RL P + +
Sbjct: 261 AISAGESHTVAVR--------QDGTVWAWGDNVWGQLGDGTRTDRLTPVQVPGLS----- 307
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G HT + + W +GL GQLG GT L P QV P
Sbjct: 308 GVTAIAEGRRHTFAVRQ--------DGTVWAWGLNFWGQLGDGTRSDRLTPVQV---PDL 356
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ ++ G +HT V G VW+WG + G + + T D ++P+ +
Sbjct: 357 TSVTAIAAGDYHTLAVRQDGTVWAWG-DNVWGQLGDGTYT-----DRLTPVQV------- 403
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTE 298
P +A G +HTV + DG +W+WG G LG G D P V P LT
Sbjct: 404 PGLTGVTAIAAGESHTVAMRQDG-TVWAWGDNVWGQLGDGTYTDRLTPVQV--PDLTS 458
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 121/297 (40%), Gaps = 42/297 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ AG +LA+ G +W WG+ G + TP V G V
Sbjct: 356 LTSVTAIAAGDYHTLAVRQDGTVWAWGDNVW---GQLGDGTYTDRLTPVQVPGLTG--VT 410
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H VA+ +D ++WG N GQLG G RL P +
Sbjct: 411 AIAAGESHTVAMR--------QDGTVWAWGDNVWGQLGDGTYTDRLTPVQVPDLT----- 457
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+V + G +HT L R+ ++C +G GQLG GT+ + P V L
Sbjct: 458 SVTAIAAGDYHT--LAVRQD-----GTVC-AWGFNAYGQLGDGTSSRSPSPVMVPGLTGV 509
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++ G HT V G VW+WG+ L A++ R P+ I
Sbjct: 510 TVFAALAAGDSHTVAVMQDGTVWAWGLNASGQLGDGATIDRR------IPVQI------- 556
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
P +A G+AHT+ DG +WSWG G LG G T +P V P LT
Sbjct: 557 PGLAGVTAIAAGSAHTLAAGQDG-AVWSWGANSYGQLGDGTTTHRLSPVQV--PGLT 610
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 122/296 (41%), Gaps = 51/296 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + ++ AG S+A+ G + WG L D +T + TP V HG
Sbjct: 609 LTGVSAMAAGDAHSVALLQDGTVSAWGRNSWGQLGDGTT------AARLTPVQV---HGL 659
Query: 58 T-VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
T V VA GS H VAL +D ++WG N+ GQLG G RL P ++
Sbjct: 660 TGVTAVAAGSLHTVALR--------QDGTVWAWGYNDLGQLGDGTTTRRLAPVQVQGLTD 711
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V + G FHT + + W +G GQLG G++ + P QV+E
Sbjct: 712 -----VTAIAAGYFHTVAVRQ--------DGTVWAWGYNLWGQLGDGSSTARSTPVQVQE 758
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L L G HT V G VW+WG G L +S R +P+ + G
Sbjct: 759 LTGVSALA---AGYAHTVAVKQDGTVWAWGNNSGTQLGNGSSTDR------YTPVWVEG- 808
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ G HT V+ +G+ W+WGR G +G G T D P V+
Sbjct: 809 ------LTGVSALTAGRFHTAAVSPEGFG-WAWGRNNFGQVGDGTTADRPRPVDVV 857
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 114/297 (38%), Gaps = 45/297 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + + AG ++A+ G W WGN G + TP V G V
Sbjct: 6 LTGVTATTAGEYHTVAVRQDGTAWAWGNNAW---GQLGDGTRTDRLTPVQVPGLTG--VT 60
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H A+ +D ++WG N GQLG G R P +
Sbjct: 61 AVAAGRHHTFAVR--------QDGTVWAWGLNVWGQLGDGTHTERHTPVQVPGLT----- 107
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G HT ++ + W +G + GQLG GT P Q LP+
Sbjct: 108 GVTAIAAGRRHTFAVSQ--------DGTVWAWGDNDWGQLGDGTRADRHTPVQ---LPEL 156
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ ++ G HT V G VW+WG + G + + T ++P+ +
Sbjct: 157 TGVTAIAAGRRHTFAVRQDGTVWAWG-DNAWGQLGDGTRTNR-----LTPVQV------- 203
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
P +A G HT+ V DG +W+WG G LG G + P V P LT
Sbjct: 204 PGLTGVTAIAAGDYHTLAVRQDG-TVWAWGNNALGQLGDGTYTERLTPVQV--PGLT 257
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 16/122 (13%)
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
++P + + G +HT V G W+WG G + + T D ++P+ +
Sbjct: 2 QVPGLTGVTATTAGEYHTVAVRQDGTAWAWG-NNAWGQLGDGTRT-----DRLTPVQV-- 53
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
P VA G HT V DG +W+WG G LG G + P V P
Sbjct: 54 -----PGLTGVTAVAAGRHHTFAVRQDG-TVWAWGLNVWGQLGDGTHTERHTPVQV--PG 105
Query: 296 LT 297
LT
Sbjct: 106 LT 107
>gi|299471207|emb|CBN79063.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 513
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 26/196 (13%)
Query: 85 VCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDM 144
+ YSWG +GQLGLGD + RP +++ V +V CGS HT +L+
Sbjct: 8 LVYSWGRGEDGQLGLGDTNDQDRPVLVDALKSK---GVVQVACGSGHTVVLSE------- 57
Query: 145 LESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+ +T+G G++G+LGHG VP V+ L + +V CG +HT+ V+ G++++
Sbjct: 58 -DGAVYTWGRGDDGRLGHGDNGWKYVPRIVEAL-EGQRIVQATCGSYHTAAVTDKGELYT 115
Query: 205 W--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
W GM LG NE+G +P ++ G + Q+ACG+ HTV++TD
Sbjct: 116 WGGGMYGKLG-------HGNESGHP-TPCMVKHLRDEGARV---TQIACGSRHTVVLTDL 164
Query: 263 GYKLWSWGRGRSGVLG 278
G K+++WG +GV+G
Sbjct: 165 G-KVYTWGDKENGVVG 179
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 111/234 (47%), Gaps = 31/234 (13%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV+VACGS H V L ED Y+WG ++G+LG GD + P+I+E
Sbjct: 42 VVQVACGSGHTVVL--------SEDGAVYTWGRGDDGRLGHGDNGWKYVPRIVEALEGQR 93
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL- 177
+ + TCGS+HTA +T + +T+G G G+LGHG P VK L
Sbjct: 94 ---IVQATCGSYHTAAVTDKGE--------LYTWGGGMYGKLGHGNESGHPTPCMVKHLR 142
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ + + CG HT V++ G V++WG +K G+ + N G P ++
Sbjct: 143 DEGARVTQIACGSRHTVVLTDLGKVYTWG-DKENGVVGHT----NADGHQYLPRMLE--- 194
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + QVA HT +T G ++++WG G+ G LG G + P +V
Sbjct: 195 --SLQAKTVTQVAACGFHTAALTAAG-EIFTWGEGKFGRLGHGMERNQMVPRMV 245
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 117/273 (42%), Gaps = 34/273 (12%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V G ++ + GA++ WG D G + P V G +V+
Sbjct: 42 VVQVACGSGHTVVLSEDGAVYTWGR---GDDGRLGHGDNGWKYVPRIVEALEGQRIVQAT 98
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CGS H A+ GE Y+WG G+LG G+ P +++ +D V
Sbjct: 99 CGSYHTAAVTDKGE--------LYTWGGGMYGKLGHGNESGHPTPCMVKHL-RDEGARVT 149
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS-ALVPEQVKELPQYVY 182
++ CGS HT +LT + +T+G ENG +GH +P ++ L
Sbjct: 150 QIACGSRHTVVLTDLGK--------VYTWGDKENGVVGHTNADGHQYLPRMLESLQAKTV 201
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
CG FHT+ +++AG++++WG E G + + RN+ + L+ H
Sbjct: 202 TQVAACG-FHTAALTAAGEIFTWG-EGKFGRLGHG-MERNQMVPRMVEALMGKRVGH--- 255
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSG 275
VACG H+ + D G +L++WG G G
Sbjct: 256 ------VACGGFHSAAILDSG-ELYTWGGGEHG 281
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 35/210 (16%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
+++ + G ++ + + G ++ WG N + ++ +G + P + T
Sbjct: 146 ARVTQIACGSRHTVVLTDLGKVYTWGDKENGVVGHTNADG-----HQYLPRMLESLQAKT 200
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +VA H AL +AGE ++WG G+LG G +++ P+++E
Sbjct: 201 VTQVAACGFHTAALTAAGE--------IFTWGEGKFGRLGHGMERNQMVPRMVEALMGKR 252
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCW---------TFGLGENGQLGHGTTQSAL 169
V V CG FH+A + D E W TFG G++G+LGHG +
Sbjct: 253 ---VGHVACGGFHSAAIL------DSGELYTWGGGEHGQVYTFGNGDHGKLGHGDVRKVS 303
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
VP V L + +++V V HT+ ++ A
Sbjct: 304 VPTLVAGLVK-MHVVKVASYNEHTAALAGA 332
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM 207
+ +++G GE+GQLG G T P V L +V V CG HT V+S G V++WG
Sbjct: 8 LVYSWGRGEDGQLGLGDTNDQDRPVLVDALKSK-GVVQVACGSGHTVVLSEDGAVYTWG- 65
Query: 208 EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLW 267
+G + L + G P ++ + Q VQ CG+ HT VTD G +L+
Sbjct: 66 -RG----DDGRLGHGDNGWKYVPRIVE-----ALEGQRIVQATCGSYHTAAVTDKG-ELY 114
Query: 268 SWGRGRSGVLGTGKTIDFFAPAIV 291
+WG G G LG G P +V
Sbjct: 115 TWGGGMYGKLGHGNESGHPTPCMV 138
>gi|426344976|ref|XP_004039179.1| PREDICTED: E3 ISG15--protein ligase HERC5 [Gorilla gorilla gorilla]
Length = 1016
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 100/205 (48%), Gaps = 23/205 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G SLA+ G L+ WG G S+ TP V G + ++
Sbjct: 139 KIIQITCGDYHSLALSKGGELFAWGQN--LHGQLGVGRKFPSTTTPQIVEHLAGVPLAQI 196
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL +G YSWG N GQLGLG ES+ P +IE + V
Sbjct: 197 SAGEAHSMALSMSGNI--------YSWGKNEFGQLGLGHTESKDYPSLIEGLDNQK---V 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
V CG H+ALLT + + +TFG G++GQLGH +TQ+ L P V EL Y
Sbjct: 246 EFVACGGSHSALLTQ--------DGLLFTFGAGKHGQLGHNSTQNELRPCLVAELVGY-R 296
Query: 183 LVSVDCGLFHT-SVVSSAGDVWSWG 206
+ + CG +HT + VS G V+S+G
Sbjct: 297 VTQIACGRWHTLAYVSDLGKVFSFG 321
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 34/235 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
++++ CG H +AL GE + +WG N +GQLG+G + S P+I+E
Sbjct: 140 IIQITCGDYHSLALSKGGELF--------AWGQNLHGQLGVGRKFPSTTTPQIVEHL-AG 190
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +++ G H+ L+ + +++G E GQLG G T+S P ++ L
Sbjct: 191 VPLA--QISAGEAHSMALS--------MSGNIYSWGKNEFGQLGLGHTESKDYPSLIEGL 240
Query: 178 P-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q V V+ CG H+++++ G ++++G K + L N + + P L++
Sbjct: 241 DNQKVEFVA--CGGSHSALLTQDGLLFTFGAGK------HGQLGHNSTQNELRPCLVAEL 292
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ Q+ACG HT+ D K++S+G G+ G LG G T D P V
Sbjct: 293 VGY-----RVTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGNGGTRDQLMPLPV 342
>gi|380019055|ref|XP_003693433.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
HERC2-like [Apis florea]
Length = 4812
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 134/290 (46%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG D G + +S P + + G +V +ACG
Sbjct: 4044 AVNSGGKHCLALSSEGHVYSWGE---GDDGKLGHGNRLSYDRPKLIEELLGTEIVDIACG 4100
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H A+ SAG Y+WG G+LG GD E +L PK+IE QD + V +V
Sbjct: 4101 GHHSAAITSAG--------WLYTWGKGRYGRLGHGDSEDQLTPKLIEAL-QD--YKVIDV 4149
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + +P +++ L + +V
Sbjct: 4150 ACGSGDAQTLCVTDDDN------VWSWGDGDYGKLGRGGSDGCKIPMKIESLAG-LGVVK 4202
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G +++WG KG LG + + R A+ G
Sbjct: 4203 VECGSQFSVALTRSGAIYTWG--KGDYHRLGHGTDDHVRRPRKVAAL----------QGK 4250
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V TD G ++++WG G LG G T P +V
Sbjct: 4251 KI---ISIATGSLHCVACTDKG-EVFTWGDNDEGQLGDGTTSALQRPRLV 4296
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 131/288 (45%), Gaps = 37/288 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
SV +GG +LA+ G ++ WG + G + +S P + + +ACG
Sbjct: 3025 SVHSGGKHALALTQDGKVFSWGE---GEDGKLGHGNSISLDKPRLIESLKSKRIRDIACG 3081
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE Y+WG G+LG GD ++ +PK++++ + ++
Sbjct: 3082 SGHSAAITSSGE--------LYTWGLGEYGRLGHGDTATQSKPKLVQSLVGQR---IIQI 3130
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + + +++G G+ G+LG G + P + L + +
Sbjct: 3131 ACGSRDAQTMALT--------ADGLVYSWGDGDFGKLGRGGSDGCYTPLLIDRL-NGLGV 3181
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
V ++CG + ++ G+VW+WG KG L P L+ G G K
Sbjct: 3182 VQIECGAQFSLALTKYGEVWTWG--KG----DYFRLGHGNDHHVRKPTLVE--GLRGKKV 3233
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ VA GA H + VTD G ++++WG G G G TI P++V
Sbjct: 3234 ---IHVAVGALHCLAVTDIG-QVYAWGDNDHGQQGNGTTIVNKKPSLV 3277
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 117/248 (47%), Gaps = 36/248 (14%)
Query: 48 PSPVWDFHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P P+ + + KV+ G +H +AL G+ + SWG +G+LG G+ S
Sbjct: 3010 PKPIPFLSQYVIKKVSVHSGGKHALALTQDGKVF--------SWGEGEDGKLGHGNSISL 3061
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
+P++IE+ + ++ CGS H+A +T +T+GLGE G+LGHG T
Sbjct: 3062 DKPRLIESLKSKR---IRDIACGSGHSAAITSSGE--------LYTWGLGEYGRLGHGDT 3110
Query: 166 QSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE 223
+ P+ V+ L ++ + CG T +++ G V+SWG + G L R
Sbjct: 3111 ATQSKPKLVQSLVGQ-RIIQIACGSRDAQTMALTADGLVYSWG-DGDFG-----KLGRGG 3163
Query: 224 AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
+ +P+LI G VQ+ CGA ++ +T G ++W+WG+G LG G
Sbjct: 3164 SDGCYTPLLIDRLNGLG-----VVQIECGAQFSLALTKYG-EVWTWGKGDYFRLGHGNDH 3217
Query: 284 DFFAPAIV 291
P +V
Sbjct: 3218 HVRKPTLV 3225
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 128/277 (46%), Gaps = 45/277 (16%)
Query: 22 ALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD--FHGHTVVKVACGSEHVVALVSAGETY 79
A+++WG L D GG L S PV+ V +A GS+ + + G+
Sbjct: 2935 AVYVWG---LNDKDQLGG--LKGSKIKLPVYSEVLSKLKPVHIAGGSKTLFVVSQEGK-- 2987
Query: 80 KGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC--GSFHTALLTH 137
Y+ G NG+LGLGD + PK I +Q + + +V+ G H LT
Sbjct: 2988 ------LYACGEGTNGRLGLGDDSNVCEPKPIPFLSQ---YVIKKVSVHSGGKHALALTQ 3038
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
+ +++G GE+G+LGHG + S P ++ L + + + CG H++ ++
Sbjct: 3039 --------DGKVFSWGEGEDGKLGHGNSISLDKPRLIESL-KSKRIRDIACGSGHSAAIT 3089
Query: 198 SAGDVWSWGM-EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--A 254
S+G++++WG+ E G L + P L+ Q +Q+ACG+ A
Sbjct: 3090 SSGELYTWGLGEYG-------RLGHGDTATQSKPKLV-----QSLVGQRIIQIACGSRDA 3137
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
T+ +T DG ++SWG G G LG G + + P ++
Sbjct: 3138 QTMALTADGL-VYSWGDGDFGKLGRGGSDGCYTPLLI 3173
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 108/262 (41%), Gaps = 44/262 (16%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFH 55
++I + GG S AI +AG L+ WG +G + + TP +
Sbjct: 4092 TEIVDIACGGHHSAAITSAGWLYTWG---------KGRYGRLGHGDSEDQLTPKLIEALQ 4142
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
+ V+ VACGS L +D +SWG + G+LG G + P IE+
Sbjct: 4143 DYKVIDVACGSGDAQTLCVT------DDDNVWSWGDGDYGKLGRGGSDGCKIPMKIESL- 4195
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
+ V +V CGS + LT +T+G G+ +LGHGT P +V
Sbjct: 4196 --AGLGVVKVECGSQFSVALTR--------SGAIYTWGKGDYHRLGHGTDDHVRRPRKVA 4245
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q ++S+ G H + G+V++WG + GD + L
Sbjct: 4246 AL-QGKKIISIATGSLHCVACTDKGEVFTWGDND-----------EGQLGDGTTSALQRP 4293
Query: 236 NGPHGPKFQDPVQVACGAAHTV 257
H + + +VACG+AHT+
Sbjct: 4294 RLVHALQGKKITRVACGSAHTL 4315
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 121/284 (42%), Gaps = 57/284 (20%)
Query: 48 PSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P V+ F ++ +A S+ H +AL +D YSWG + G+LG GDR
Sbjct: 494 PQRVYGFSEKPIIMIASHSDGTHYLALT--------QDNSVYSWGNGDGGRLGHGDRAWY 545
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
PK+IE + + + + CGS ++A L+ +T+G G G+LGHG +
Sbjct: 546 DEPKLIEALVEKN---ITFIACGSTYSAALSSNGE--------LYTWGRGNYGRLGHGNS 594
Query: 166 QSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLT 220
+ ++P V L V V+ G T V+++G V+SWG + G G C
Sbjct: 595 DNVMIPTLVTALNGHMVVYVACGSGDSQTLCVTASGIVFSWGDGNYGKLGRGGC------ 648
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRS 274
+G PK D + +V CG + +T G ++++WG+G +
Sbjct: 649 ---------------DGSKTPKIVDKLLDINVAKVYCGGQFSAALTAYG-EVYTWGKGEA 692
Query: 275 GVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKD 318
LG G P I+ + + K EL G L T+D
Sbjct: 693 YRLGHGNEDHVRYPKII---DILKTKKVKELCVGNLHVLALTED 733
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 26/207 (12%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P + E+ + P ++T G +T +
Sbjct: 3956 YGWGHNHRGQLGGLEGAKVKLPVLCESLSALRP---VQLTGGEQTLFAVT--------AD 4004
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T S +VP ++ + Q+V++ V+V+ G H +SS G V+S
Sbjct: 4005 GKVYATGYGAVGRLGIGGTDSVMVPTLLESI-QHVFVKKVAVNSGGKHCLALSSEGHVYS 4063
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG E G + + + I +L + + V +ACG H+ +T G+
Sbjct: 4064 WG-EGDDGKLGHGNRLSYDRPKLIEELLGT----------EIVDIACGGHHSAAITSAGW 4112
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
L++WG+GR G LG G + D P ++
Sbjct: 4113 -LYTWGKGRYGRLGHGDSEDQLTPKLI 4138
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ ++ G SLA+ G +W WG D G + P+ V G V+ VA
Sbjct: 3181 VVQIECGAQFSLALTKYGEVWTWGK---GDYFRLGHGNDHHVRKPTLVEGLRGKKVIHVA 3237
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ G+ Y+WG N++GQ G G +P ++ + V
Sbjct: 3238 VGALHCLAVTDIGQV--------YAWGDNDHGQQGNGTTIVNKKPSLVHELDDAR---VN 3286
Query: 124 EVTCGSFHT 132
V+CGS H+
Sbjct: 3287 RVSCGSSHS 3295
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 25/189 (13%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
C + M+L D G ++ WG+ D G +TP + +G VV++ C
Sbjct: 3132 CGSRDAQTMALTAD--GLVYSWGD---GDFGKLGRGGSDGCYTPLLIDRLNGLGVVQIEC 3186
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G++ +AL GE ++WG + +LG G+ +P ++E V
Sbjct: 3187 GAQFSLALTKYGEV--------WTWGKGDYFRLGHGNDHHVRKPTLVEGLRGKK---VIH 3235
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
V G+ H +T D+ + W G ++GQ G+GTT P V EL +
Sbjct: 3236 VAVGALHCLAVT------DIGQVYAW--GDNDHGQQGNGTTIVNKKPSLVHELDD-ARVN 3286
Query: 185 SVDCGLFHT 193
V CG H+
Sbjct: 3287 RVSCGSSHS 3295
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 22/152 (14%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +L + +G ++ WG+ + G S TP V V KV CG +
Sbjct: 618 SGDSQTLCVTASGIVFSWGD---GNYGKLGRGGCDGSKTPKIVDKLLDINVAKVYCGGQF 674
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
AL + GE Y+WG +LG G+ + PKII+ V E+ G
Sbjct: 675 SAALTAYGEV--------YTWGKGEAYRLGHGNEDHVRYPKIIDILKTKK---VKELCVG 723
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQL 160
+ H LT + + + +G + GQ+
Sbjct: 724 NLHVLALTE--------DQLIYGWGRNDYGQI 747
>gi|301106605|ref|XP_002902385.1| regulator of chromosome condensation (RCC1)-like protein
[Phytophthora infestans T30-4]
gi|262098259|gb|EEY56311.1| regulator of chromosome condensation (RCC1)-like protein
[Phytophthora infestans T30-4]
Length = 545
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 130/290 (44%), Gaps = 36/290 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G ++ + G ++ WG D G F P V + G + +V
Sbjct: 35 RIVQIACGSGHTVVLTEEGEVYTWGR---GDDGRLGHGDNGWKFVPRLVEELRGKNIRQV 91
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
CGS H A+ +G+ Y+WG G+LG G+ P ++ET V
Sbjct: 92 TCGSYHTAAVTVSGD--------LYTWGGGMYGKLGHGNETGHSTPYLVETLK---SMQV 140
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS-ALVPEQVKELPQYV 181
+V CGS HT +L K +T+G ENG GHG T+ +P V+EL
Sbjct: 141 RQVACGSRHTVVLLENKD--------VYTWGDKENGVSGHGDTEGHQYLPCPVEELRGKS 192
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ CG FHT+ +S G+V+++G K L N+ RN+ P+ + G
Sbjct: 193 IVQISACG-FHTAALSEFGEVFTFGEGKFGRLGHNSE--RNQ------PVARFVDALAGK 243
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + QVACG HT VT+ G ++++WG G G LG G ++ P V
Sbjct: 244 RVK---QVACGGFHTAAVTETG-EVYTWGGGEHGQLGHGDKVNKTVPTRV 289
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 105/201 (52%), Gaps = 28/201 (13%)
Query: 84 LVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPND 143
+ YSWG +GQLGLGD + RP I+ + + ++ CGS HT +LT
Sbjct: 1 MTVYSWGRGEDGQLGLGDTSDQHRPVPIDALAERR---IVQIACGSGHTVVLTE------ 51
Query: 144 MLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVW 203
E +T+G G++G+LGHG VP V+EL + + V CG +HT+ V+ +GD++
Sbjct: 52 --EGEVYTWGRGDDGRLGHGDNGWKFVPRLVEEL-RGKNIRQVTCGSYHTAAVTVSGDLY 108
Query: 204 SW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+W GM LG NE G + +P L+ K QVACG+ HTV++ +
Sbjct: 109 TWGGGMYGKLG-------HGNETGHS-TPYLVE-----TLKSMQVRQVACGSRHTVVLLE 155
Query: 262 DGYKLWSWGRGRSGVLGTGKT 282
+ +++WG +GV G G T
Sbjct: 156 N-KDVYTWGDKENGVSGHGDT 175
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 109/253 (43%), Gaps = 33/253 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
Q+ V G ++ + ++ WG N TEG + P PV + G ++
Sbjct: 139 QVRQVACGSRHTVVLLENKDVYTWGDKENGVSGHGDTEG-----HQYLPCPVEELRGKSI 193
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V+++ H AL GE + ++G G+LG ++ + ++ +
Sbjct: 194 VQISACGFHTAALSEFGEVF--------TFGEGKFGRLGHNSERNQPVARFVDAL---AG 242
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CG FHTA +T +T+G GE+GQLGHG + VP +V+ L +
Sbjct: 243 KRVKQVACGGFHTAAVTETGE--------VYTWGGGEHGQLGHGDKVNKTVPTRVESLLE 294
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGM--EKGLGLCPNASLTRNEAGDAIS---PILIS 234
+ L + CG HT ++ G+V++WG LG A +T + D + I ++
Sbjct: 295 KLVL-QITCGWSHTVTLTDTGEVYTWGNGDHGKLGHNDTAKVTLPKPVDVLDGKRVISVA 353
Query: 235 GNGPHGPKFQDPV 247
H DPV
Sbjct: 354 SYNEHTVALVDPV 366
>gi|333978308|ref|YP_004516253.1| Ig domain-containing protein [Desulfotomaculum kuznetsovii DSM
6115]
gi|333821789|gb|AEG14452.1| Ig domain protein group 2 domain protein [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 1401
Score = 99.8 bits (247), Expect = 2e-18, Method: Composition-based stats.
Identities = 85/294 (28%), Positives = 130/294 (44%), Gaps = 49/294 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + +V+AG SLA+ + G +W WG+ L D +T + +TP V + G
Sbjct: 66 LTGVVAVEAGSFYSLALKSDGTVWAWGDNYYGQLGDGTT------TNRYTPVQVQNLTG- 118
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +A G H +AL S G ++WG N GQLG G +R P ++
Sbjct: 119 -VVAIAAGGGHSLALKSDG--------TVWAWGYNGYGQLGDGTITNRTTPVQVKNLTGV 169
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V G H+ L + W +G GQLG GTT + P QV+ L
Sbjct: 170 V-----AVAAGGGHSLALKS--------DGTVWAWGYNGYGQLGDGTTMNRYTPVQVQNL 216
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+V++ G H+ + S G VW+WG G G + + T + +P+ + G
Sbjct: 217 TG---VVAIAAGSSHSLALKSDGTVWAWG-NNGYGQLGDGTTT-----NRTTPVRVQG-- 265
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D V +A G H++ + DG +W+WG SG LG G T + + P V
Sbjct: 266 -----LTDVVAIAAGNEHSLALKSDG-TVWTWGWNYSGQLGDGTTTNRYTPVQV 313
Score = 78.2 bits (191), Expect = 8e-12, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 88/193 (45%), Gaps = 29/193 (15%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
SLA+ + G +W WG G + ++ +TP V + G VV +A GS H +AL
Sbjct: 179 SLALKSDGTVWAWG---YNGYGQLGDGTTMNRYTPVQVQNLTG--VVAIAAGSSHSLALK 233
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G ++WG N GQLG G +R P ++ V + G+ H+
Sbjct: 234 SDG--------TVWAWGNNGYGQLGDGTTTNRTTPVRVQGLTD-----VVAIAAGNEHSL 280
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L + WT+G +GQLG GTT + P QV+ L +V++ G H+
Sbjct: 281 ALKS--------DGTVWTWGWNYSGQLGDGTTTNRYTPVQVQNLTG---VVAIAAGGGHS 329
Query: 194 SVVSSAGDVWSWG 206
+ S G VW+WG
Sbjct: 330 LALKSDGTVWAWG 342
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ AG SLA+ + G +W WG S G + + +TP V + G VV
Sbjct: 266 LTDVVAIAAGNEHSLALKSDGTVWTWG---WNYSGQLGDGTTTNRYTPVQVQNLTG--VV 320
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
+A G H +AL S G ++WG N+ G+LG G R R P + N
Sbjct: 321 AIAAGGGHSLALKSDG--------TVWAWGNNDWGELGDGTRTDRHTPVQVSGLN 367
>gi|428184654|gb|EKX53509.1| hypothetical protein GUITHDRAFT_64398, partial [Guillardia theta
CCMP2712]
Length = 279
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 116/248 (46%), Gaps = 33/248 (13%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P P+ V++VA G +H AL S+G+ Y SWG NG+LG G+ +
Sbjct: 21 PKPIKSLKEKGVIQVAVGPQHCSALCSSGQIY--------SWGIGLNGRLGHGNIQDSSA 72
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
PK++ + ++ ++ CG+ H+A LT + +++G G NG+LG+G
Sbjct: 73 PKMLASTKKNC--TAVQIACGAAHSAYLTQ--------DGKLYSWGRGLNGELGNGERHD 122
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDA 227
P V L V + V CG T + G ++SWG K + L + D
Sbjct: 123 QWTPNLVLRLRDLV-VSYVACGTNTTFACTGGGLLFSWGSGK------HGCLGLGDREDR 175
Query: 228 ISPILISGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFF 286
+ P L+ + +D + +VACG H + +T+DG KLW WGRG G G G T +
Sbjct: 176 LEPSLVR------LREEDRIIRVACGEHHCLALTEDG-KLWGWGRGTGGCHGLGHTSEVL 228
Query: 287 APAIVLWP 294
+P + P
Sbjct: 229 SPHKLPMP 236
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 93/206 (45%), Gaps = 27/206 (13%)
Query: 88 SWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLES 147
SWG N LG G + PK I++ + V +V G H + L
Sbjct: 1 SWGTGFNLCLGHGSHANEKYPKPIKSLKEK---GVIQVAVGPQHCSALCS--------SG 49
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM 207
+++G+G NG+LGHG Q + P+ + + V + CG H++ ++ G ++SWG
Sbjct: 50 QIYSWGIGLNGRLGHGNIQDSSAPKMLASTKKNCTAVQIACGAAHSAYLTQDGKLYSWG- 108
Query: 208 EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV--QVACGAAHTVLVTDDGYK 265
+GL N L E D +P L+ + +D V VACG T T G
Sbjct: 109 -RGL----NGELGNGERHDQWTPNLVL-------RLRDLVVSYVACGTNTTFACTGGGL- 155
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIV 291
L+SWG G+ G LG G D P++V
Sbjct: 156 LFSWGSGKHGCLGLGDREDRLEPSLV 181
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 23/205 (11%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
+ G S + G L+ WG + G +TP+ V V VACG+
Sbjct: 88 IACGAAHSAYLTQDGKLYSWGR---GLNGELGNGERHDQWTPNLVLRLRDLVVSYVACGT 144
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
A G + +SWG+ +G LGLGDRE RL P ++ +D + V
Sbjct: 145 NTTFACTGGG--------LLFSWGSGKHGCLGLGDREDRLEPSLVRLREEDR---IIRVA 193
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSV 186
CG H LT + W +G G G G G T L P ++ +P+ +VS+
Sbjct: 194 CGEHHCLALTE--------DGKLWGWGRGTGGCHGLGHTSEVLSPHKL-PMPEDRTIVSM 244
Query: 187 DCGLFHTSVVSSAGDVWSWGMEKGL 211
CG +H++ ++ GD++ +G +G
Sbjct: 245 SCGRWHSAYLTIRGDIFCFGSGRGF 269
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 12/142 (8%)
Query: 151 TFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG 210
++G G N LGHG+ + P+ +K L + ++ V G H S + S+G ++SWG
Sbjct: 1 SWGTGFNLCLGHGSHANEKYPKPIKSLKEKG-VIQVAVGPQHCSALCSSGQIYSWG---- 55
Query: 211 LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG 270
+GL N L D+ +P +++ K VQ+ACGAAH+ +T DG KL+SWG
Sbjct: 56 IGL--NGRLGHGNIQDSSAPKMLAST----KKNCTAVQIACGAAHSAYLTQDG-KLYSWG 108
Query: 271 RGRSGVLGTGKTIDFFAPAIVL 292
RG +G LG G+ D + P +VL
Sbjct: 109 RGLNGELGNGERHDQWTPNLVL 130
>gi|312381821|gb|EFR27472.1| hypothetical protein AND_05798 [Anopheles darlingi]
Length = 5197
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 141/291 (48%), Gaps = 41/291 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG + G + ++ P + + +ACG
Sbjct: 3332 AVHSGGKHAMALTLDGKVFSWGE---GEDGKLGHGNRLTLEKPKLIETLRTKRIRDIACG 3388
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE Y+WG G+LG GD ++L+PK++ + V +V
Sbjct: 3389 SSHSAAITSSGE--------LYTWGLGEYGRLGHGDNCTQLKPKLVTAL---ADHRVVQV 3437
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L + E + +++G G+ G+LG G ++ +P QV+ L V ++
Sbjct: 3438 ACGSRDAQTLCLTE------EGLVFSWGDGDFGKLGRGGSEGCSIPHQVERL-NGVGVMQ 3490
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ +G+VW+WG KG LG + + + +PI G
Sbjct: 3491 IECGAQFSLALTKSGEVWTWG--KGDYYRLGHGTDQHVRKP------TPI-------QGL 3535
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ + + VA GA H + VTD G ++++WG G G+G TI P++VL
Sbjct: 3536 RGKKVIHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGSGNTIVNKKPSLVL 3585
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 115/251 (45%), Gaps = 34/251 (13%)
Query: 44 SSFTPSPVWDFHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD 101
S TP+ V + KVA G +H +AL S GE + SWG +G+LG G+
Sbjct: 4449 SVTTPTLVESLQHVMIKKVAVNSGGKHCLALSSDGEVF--------SWGEGEDGKLGHGN 4500
Query: 102 RESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
R+S RPK+IE S V ++ CGS H+A +T + T+G G G+LG
Sbjct: 4501 RDSYDRPKLIEAL---SGIGVIDIACGSAHSACITS--------QGHVLTWGKGRYGRLG 4549
Query: 162 HGTTQSALVPEQVKELPQYVYL-VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
HG ++ L P+ V+ L Y + ++ G T ++ +VWSWG + G L
Sbjct: 4550 HGDSEDQLQPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWG-DGDYG-----KLG 4603
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
R + P+ I G +V CG+ +V +T G +++WG+G LG G
Sbjct: 4604 RGGSDGCKVPMKIESLAGLG-----VTKVECGSQFSVALTRSG-SVYTWGKGDYHRLGHG 4657
Query: 281 KTIDFFAPAIV 291
T P V
Sbjct: 4658 NTDHVRRPKKV 4668
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 128/295 (43%), Gaps = 41/295 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
M + +V +GG LA+ + G ++ WG + G + S P + G V+
Sbjct: 4463 MIKKVAVNSGGKHCLALSSDGEVFSWGE---GEDGKLGHGNRDSYDRPKLIEALSGIGVI 4519
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+ACGS H + S G +WG G+LG GD E +L+PK++E +
Sbjct: 4520 DIACGSAHSACITSQGHVL--------TWGKGRYGRLGHGDSEDQLQPKLVEAL---LGY 4568
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
++ CGS L N W++G G+ G+LG G + VP +++ L
Sbjct: 4569 RAIDIACGSGDAQTLCITDDDN------VWSWGDGDYGKLGRGGSDGCKVPMKIESLAG- 4621
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGN 236
+ + V+CG + ++ +G V++WG KG LG + R + A+
Sbjct: 4622 LGVTKVECGSQFSVALTRSGSVYTWG--KGDYHRLGHGNTDHVRRPKKVAAL-------- 4671
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V +D G ++++WG G LG G P +V
Sbjct: 4672 --QGKKI---ISIATGSLHCVACSDGG-EVFTWGDNDEGQLGDGTVSAIQRPRLV 4720
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 107/258 (41%), Gaps = 38/258 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S AI ++G L+ WG L + G + P V H VV+V
Sbjct: 3381 RIRDIACGSSHSAAITSSGELYTWG---LGEYGRLGHGDNCTQLKPKLVTALADHRVVQV 3437
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E+ + +SWG + G+LG G E P +E N V
Sbjct: 3438 ACGSRDAQTLCLT------EEGLVFSWGDGDFGKLGRGGSEGCSIPHQVERLNG---VGV 3488
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT WT+G G+ +LGHGT Q P ++ L +
Sbjct: 3489 MQIECGAQFSLALTKSGE--------VWTWGKGDYYRLGHGTDQHVRKPTPIQGL-RGKK 3539
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
++ V G H V+ +G V++WG N+ G S I P
Sbjct: 3540 VIHVAVGALHCLAVTDSGQVYAWG--------------DNDHGQQGSGNTIVNKKPSLVL 3585
Query: 243 FQDPV---QVACGAAHTV 257
D + +VACG++H+V
Sbjct: 3586 GLDGIFVNRVACGSSHSV 3603
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 30/204 (14%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC--GSFHTALLTHRK 139
+D Y+ G NG+LGLG + PK + +Q + V +V G H LT
Sbjct: 3291 QDGKLYACGEGTNGRLGLGHNNNVPTPKQVPILSQ---YVVKKVAVHSGGKHAMALT--- 3344
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
L+ +++G GE+G+LGHG + P+ ++ L + + + CG H++ ++S+
Sbjct: 3345 -----LDGKVFSWGEGEDGKLGHGNRLTLEKPKLIETL-RTKRIRDIACGSSHSAAITSS 3398
Query: 200 GDVWSWGM-EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHT 256
G++++WG+ E G L + + P L++ H VQVACG+ A T
Sbjct: 3399 GELYTWGLGEYG-------RLGHGDNCTQLKPKLVTALADH-----RVVQVACGSRDAQT 3446
Query: 257 VLVTDDGYKLWSWGRGRSGVLGTG 280
+ +T++G ++SWG G G LG G
Sbjct: 3447 LCLTEEGL-VFSWGDGDFGKLGRG 3469
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 113/254 (44%), Gaps = 54/254 (21%)
Query: 28 NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA--CGSEHVVALVSAGETYKGEDLV 85
NC PD++ P P+ +V++A C HV+AL + G+ +
Sbjct: 610 NCHTPDTTA-----------PKPIEGLESVNIVQLAAHCEGRHVLALTATGDVF------ 652
Query: 86 CYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
SWG G+LG GD S+ P I + V+ CGS ++A +T
Sbjct: 653 --SWGNGEGGRLGHGDTSSKDIPTRIVALAERQVTGVF---CGSSYSAAITAAGE----- 702
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY-VYLVSVDCGLFHTSVVSSAGDVWS 204
+T+G G G+LGHG ++ +P V+ L Q V V++ CG H+ V+ G V++
Sbjct: 703 ---LYTWGRGTYGRLGHGNSEDKHLPTIVQVLKQQRVIHVALGCGDAHSLCVTDTGIVYA 759
Query: 205 WG----MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD-PVQVACGAAHTVLV 259
WG + G G C +S+ P+ I P+ D V+V G+ +V +
Sbjct: 760 WGDGDFGKLGNGTCNGSSV----------PVAI-----ELPQCSDGAVKVFSGSHFSVAL 804
Query: 260 TDDGYKLWSWGRGR 273
DG ++SWG+G
Sbjct: 805 GRDG-TVYSWGKGH 817
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 109/262 (41%), Gaps = 34/262 (12%)
Query: 11 GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVV 70
G LA+ G ++ WGN + G S P+ + V V CGS +
Sbjct: 639 GRHVLALTATGDVFSWGN---GEGGRLGHGDTSSKDIPTRIVALAERQVTGVFCGSSYSA 695
Query: 71 ALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF 130
A+ +AGE Y+WG G+LG G+ E + P I++ Q V + CG
Sbjct: 696 AITAAGE--------LYTWGRGTYGRLGHGNSEDKHLPTIVQVLKQQRVIHV-ALGCGDA 746
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVDCG 189
H+ +T + + +G G+ G+LG+GT + VP + ELPQ V V G
Sbjct: 747 HSLCVTD--------TGIVYAWGDGDFGKLGNGTCNGSSVPVAI-ELPQCSDGAVKVFSG 797
Query: 190 LFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV 249
+ + G V+SWG L + SP I + ++ V +
Sbjct: 798 SHFSVALGRDGTVYSWGKGH------GGRLGHGHSEHTASPKAI-----QALEGKNIVDL 846
Query: 250 ACGAAHTVLVTDDGYKLWSWGR 271
A G AH + +T G +L+ WGR
Sbjct: 847 AVGLAHCLALTASG-ELYGWGR 867
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 15/147 (10%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G GE G+LGHG T S +P ++ L + + V CG +++ +++AG++++WG +
Sbjct: 652 FSWGNGEGGRLGHGDTSSKDIPTRIVALAER-QVTGVFCGSSYSAAITAAGELYTWG--R 708
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA--CGAAHTVLVTDDGYKLW 267
G L + D P ++ K Q + VA CG AH++ VTD G ++
Sbjct: 709 GT----YGRLGHGNSEDKHLPTIV-----QVLKQQRVIHVALGCGDAHSLCVTDTGI-VY 758
Query: 268 SWGRGRSGVLGTGKTIDFFAPAIVLWP 294
+WG G G LG G P + P
Sbjct: 759 AWGDGDFGKLGNGTCNGSSVPVAIELP 785
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G S+A+ +G+++ WG D G + P V G ++ +A
Sbjct: 4624 VTKVECGSQFSVALTRSGSVYTWGK---GDYHRLGHGNTDHVRRPKKVAALQGKKIISIA 4680
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H VA GE + +WG N+ GQLG G + RP+++++ +
Sbjct: 4681 TGSLHCVACSDGGEVF--------TWGDNDEGQLGDGTVSAIQRPRLVQSLQGKH---IV 4729
Query: 124 EVTCGSFHTALLT 136
+V CGS HT L+
Sbjct: 4730 KVICGSAHTLALS 4742
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 91/205 (44%), Gaps = 26/205 (12%)
Query: 89 WGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLES 147
WG N+ QLG G + S+++ P +Q P + GS +++ +
Sbjct: 3246 WGLNDKEQLG-GLKGSKVKLPTYSSVLSQLKP---IHIAGGSKSLFIVSQ--------DG 3293
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVDCGLFHTSVVSSAGDVWSWG 206
+ G G NG+LG G + P+QV L QYV V+V G H ++ G V+SWG
Sbjct: 3294 KLYACGEGTNGRLGLGHNNNVPTPKQVPILSQYVVKKVAVHSGGKHAMALTLDGKVFSWG 3353
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
+ L LT + P LI + +D +ACG++H+ +T G +L
Sbjct: 3354 EGEDGKLGHGNRLTLEK------PKLI--ETLRTKRIRD---IACGSSHSAAITSSG-EL 3401
Query: 267 WSWGRGRSGVLGTGKTIDFFAPAIV 291
++WG G G LG G P +V
Sbjct: 3402 YTWGLGEYGRLGHGDNCTQLKPKLV 3426
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 98/209 (46%), Gaps = 30/209 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
+ WG N+ GQLG D P E + P ++ G +T P+ L
Sbjct: 4380 FGWGHNHRGQLGGLDGSRIKMPTPCEALSLLRP---IQIAGGEQTLYAVT----PDGKL- 4431
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T S P V+ L Q+V + V+V+ G H +SS G+V+S
Sbjct: 4432 ---YATGYGAGGRLGIGGTDSVTTPTLVESL-QHVMIKKVAVNSGGKHCLALSSDGEVFS 4487
Query: 205 WGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG E G LG S R + +A+S I + + +ACG+AH+ +T
Sbjct: 4488 WGEGEDGKLGHGNRDSYDRPKLIEALSGIGV-------------IDIACGSAHSACITSQ 4534
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ L +WG+GR G LG G + D P +V
Sbjct: 4535 GHVL-TWGKGRYGRLGHGDSEDQLQPKLV 4562
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 77/190 (40%), Gaps = 23/190 (12%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +L I + +W WG+ D G P + G V KV CGS+
Sbjct: 4577 SGDAQTLCITDDDNVWSWGD---GDYGKLGRGGSDGCKVPMKIESLAGLGVTKVECGSQF 4633
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL +G Y +WG + +LG G+ + RPK + + + G
Sbjct: 4634 SVALTRSGSVY--------TWGKGDYHRLGHGNTDHVRRPKKVAALQGKK---IISIATG 4682
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
S H + D E W G + GQLG GT + P V+ L Q ++V V C
Sbjct: 4683 SLHCVACS------DGGEVFTW--GDNDEGQLGDGTVSAIQRPRLVQSL-QGKHIVKVIC 4733
Query: 189 GLFHTSVVSS 198
G HT +S+
Sbjct: 4734 GSAHTLALST 4743
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGNGP 238
+ ++ C H +++ GDV+SWG +G LG +S A++ ++G
Sbjct: 630 IVQLAAHCEGRHVLALTATGDVFSWGNGEGGRLGHGDTSSKDIPTRIVALAERQVTG--- 686
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V CG++++ +T G +L++WGRG G LG G + D P IV
Sbjct: 687 ----------VFCGSSYSAAITAAG-ELYTWGRGTYGRLGHGNSEDKHLPTIV 728
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G + LA+ ++G ++ WG+ D +G + + + PS V G V +V
Sbjct: 3539 KVIHVAVGALHCLAVTDSGQVYAWGD---NDHGQQGSGNTIVNKKPSLVLGLDGIFVNRV 3595
Query: 63 ACGSEHVVA 71
ACGS H VA
Sbjct: 3596 ACGSSHSVA 3604
>gi|110825982|ref|NP_057407.2| E3 ISG15--protein ligase HERC5 [Homo sapiens]
gi|296434523|sp|Q9UII4.2|HERC5_HUMAN RecName: Full=E3 ISG15--protein ligase HERC5; AltName:
Full=Cyclin-E-binding protein 1; AltName: Full=HECT
domain and RCC1-like domain-containing protein 5
gi|119626425|gb|EAX06020.1| hect domain and RLD 5 [Homo sapiens]
Length = 1024
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 100/205 (48%), Gaps = 23/205 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G SLA+ G L+ WG G S+ TP V G + ++
Sbjct: 139 KIIQITCGDYHSLALSKGGELFAWGQN--LHGQLGVGRKFPSTTTPQIVEHLAGVPLAQI 196
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL +G YSWG N GQLGLG ES+ P +IE + V
Sbjct: 197 SAGEAHSMALSMSGNI--------YSWGKNECGQLGLGHTESKDDPSLIEGLDNQK---V 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
V CG H+ALLT + + +TFG G++GQLGH +TQ+ L P V EL Y
Sbjct: 246 EFVACGGSHSALLTQ--------DGLLFTFGAGKHGQLGHNSTQNELRPCLVAELVGY-R 296
Query: 183 LVSVDCGLFHT-SVVSSAGDVWSWG 206
+ + CG +HT + VS G V+S+G
Sbjct: 297 VTQIACGRWHTLAYVSDLGKVFSFG 321
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 34/235 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
++++ CG H +AL GE + +WG N +GQLG+G + S P+I+E
Sbjct: 140 IIQITCGDYHSLALSKGGELF--------AWGQNLHGQLGVGRKFPSTTTPQIVEHL-AG 190
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +++ G H+ L+ + +++G E GQLG G T+S P ++ L
Sbjct: 191 VPLA--QISAGEAHSMALS--------MSGNIYSWGKNECGQLGLGHTESKDDPSLIEGL 240
Query: 178 P-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q V V+ CG H+++++ G ++++G K + L N + + P L++
Sbjct: 241 DNQKVEFVA--CGGSHSALLTQDGLLFTFGAGK------HGQLGHNSTQNELRPCLVAEL 292
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ Q+ACG HT+ D K++S+G G+ G LG G T D P V
Sbjct: 293 VGY-----RVTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGNGGTRDQLMPLPV 342
>gi|444915391|ref|ZP_21235524.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
gi|444713468|gb|ELW54366.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
Length = 743
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 130/288 (45%), Gaps = 47/288 (16%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
+V AG SLA + G++W WG+ DS G + +S +P V G VV VA
Sbjct: 399 VAVAAGFNHSLAARSDGSVWAWGSN---DSGQLGDGTTRNSTSPVQVQGLSG--VVAVAA 453
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G +H +AL S G ++WG+N GQLG G +RL P + + V
Sbjct: 454 GFDHSLALRSDGS--------VWAWGSNAYGQLGEGTTTNRLVPVQVLS-------GVVA 498
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
V GS H+ L R + WT+G GQLG GTT + LVP QV+ L +
Sbjct: 499 VAAGSNHS--LAVRS------DGTVWTWGSNLYGQLGDGTTSNRLVPVQVQGLSG---VA 547
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDA-ISPILISGNGPHGPKF 243
+V G FH+ V S G VW+WG S + E GD S L+ G P
Sbjct: 548 AVAAGSFHSLAVHSDGSVWAWG-----------SNSSGELGDGTTSNRLVPG---RVPGL 593
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA G H+++V DG +W+WG G LG G T P V
Sbjct: 594 SGGVAVAAGGFHSLVVRSDG-TVWTWGSNSFGELGDGTTTSRSVPVQV 640
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 131/293 (44%), Gaps = 50/293 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S + +V AG SLA+ + G +W WG+ L D +T + P V G
Sbjct: 493 LSGVVAVAAGSNHSLAVRSDGTVWTWGSNLYGQLGDGTTS------NRLVPVQVQGLSG- 545
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V VA GS H +A+ S G ++WG+N++G+LG G +RL P + +
Sbjct: 546 -VAAVAAGSFHSLAVHSDGS--------VWAWGSNSSGELGDGTTSNRLVPGRVPGLSGG 596
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V G FH+ ++ + WT+G G+LG GTT S VP QV+ L
Sbjct: 597 -----VAVAAGGFHSLVVRS--------DGTVWTWGSNSFGELGDGTTTSRSVPVQVQGL 643
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+V+VD G H+ V S G VW+WG G + + TR P+ +
Sbjct: 644 SG---VVAVDAGNSHSLAVRSDGTVWTWGYNS-YGQLGDGTTTRRSV-----PVQV---- 690
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
P V +A GA H ++V DG +W+WG G LG G + F AI
Sbjct: 691 ---PGLSGVVAMATGALHPLVVRSDG-TVWAWGYNSFGQLGNGSPL-FATTAI 738
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 133/294 (45%), Gaps = 51/294 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S + +V AG SLA+ + G++W WG+ L + +T LV PV G
Sbjct: 445 LSGVVAVAAGFDHSLALRSDGSVWAWGSNAYGQLGEGTTT--NRLV------PVQVLSG- 495
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV VA GS H +A+ S D ++WG+N GQLG G +RL P ++ +
Sbjct: 496 -VVAVAAGSNHSLAVRS--------DGTVWTWGSNLYGQLGDGTTSNRLVPVQVQGLS-- 544
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V V GSFH+ L H + W +G +G+LG GTT + LVP +V
Sbjct: 545 ---GVAAVAAGSFHS-LAVHS-------DGSVWAWGSNSSGELGDGTTSNRLVPGRV--- 590
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P V+V G FH+ VV S G VW+WG L + +R+ P+ + G
Sbjct: 591 PGLSGGVAVAAGGFHSLVVRSDGTVWTWGSNSFGELGDGTTTSRSV------PVQVQG-- 642
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V V G +H++ V DG +W+WG G LG G T P V
Sbjct: 643 -----LSGVVAVDAGNSHSLAVRSDG-TVWTWGYNSYGQLGDGTTTRRSVPVQV 690
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 137/294 (46%), Gaps = 49/294 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S + SV AG SLA+ + G +W WG+ L D +T + P V G
Sbjct: 145 LSGVVSVAAGSSYSLAVRSDGTVWAWGSNFSGQLGDGTTS------NRLVPVQVPGLSG- 197
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV VA GS H +A++S G ++WGAN++GQLG G + +RL P + +
Sbjct: 198 -VVSVAAGSSHSLAVLSDGS--------VWAWGANSSGQLGDGTKINRLVPVQVPGLS-- 246
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V V G+ H+ L R + WT+G GQLG GT LVP +V+ L
Sbjct: 247 ---GVVAVAAGAAHS--LAVRS------DGTVWTWGANSFGQLGDGTKSDRLVPVRVQGL 295
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+V+ D G +H+ + S G VW+WG L ++S +R+ P+ + G
Sbjct: 296 SG---VVASDVGSYHSLALRSDGSVWAWGHNSSGQLGDDSSTSRSV------PVQVRG-- 344
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ V G++H++ V DG +W+WG SG G G T + +P V
Sbjct: 345 -----LSGGMAVTAGSSHSLAVGSDG-TVWAWGSNFSGERGEGTTNNRASPVQV 392
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 104/233 (44%), Gaps = 38/233 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV VA GS H +A+ D ++WG+N++GQLG G RL P ++ +
Sbjct: 98 VVAVAAGSSHSLAVR--------HDGTVWAWGSNSDGQLGDGTTTMRLTPVRVQGLS--- 146
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V V GS ++ L R + W +G +GQLG GTT + LVP QV P
Sbjct: 147 --GVVSVAAGSSYS--LAVRS------DGTVWAWGSNFSGQLGDGTTSNRLVPVQV---P 193
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+VSV G H+ V S G VW+WG L + R + P+ +
Sbjct: 194 GLSGVVSVAAGSSHSLAVLSDGSVWAWGANSSGQLGDGTKINR------LVPVQV----- 242
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P V VA GAAH++ V DG +W+WG G LG G D P V
Sbjct: 243 --PGLSGVVAVAAGAAHSLAVRSDG-TVWTWGANSFGQLGDGTKSDRLVPVRV 292
>gi|6630609|dbj|BAA88519.1| cyclin-E binding protein 1 [Homo sapiens]
Length = 1024
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 100/205 (48%), Gaps = 23/205 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G SLA+ G L+ WG G S+ TP V G + ++
Sbjct: 139 KIIQITCGDYHSLALSKGGELFAWGQN--LHGQLGVGRKFPSTTTPQIVEHLAGVPLAQI 196
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL +G YSWG N GQLGLG ES+ P +IE + V
Sbjct: 197 SAGEAHSMALSMSGNI--------YSWGKNECGQLGLGHTESKDDPSLIEGLDNQK---V 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
V CG H+ALLT + + +TFG G++GQLGH +TQ+ L P V EL Y
Sbjct: 246 EFVACGGSHSALLTQ--------DGLLFTFGAGKHGQLGHNSTQNELRPCLVAELVGY-R 296
Query: 183 LVSVDCGLFHT-SVVSSAGDVWSWG 206
+ + CG +HT + VS G V+S+G
Sbjct: 297 VTQIACGRWHTLAYVSDLGKVFSFG 321
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 34/235 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
++++ CG H +AL GE + +WG N +GQLG+G + S P+I+E
Sbjct: 140 IIQITCGDYHSLALSKGGELF--------AWGQNLHGQLGVGRKFPSTTTPQIVEHL-AG 190
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +++ G H+ L+ + +++G E GQLG G T+S P ++ L
Sbjct: 191 VPLA--QISAGEAHSMALS--------MSGNIYSWGKNECGQLGLGHTESKDDPSLIEGL 240
Query: 178 P-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q V V+ CG H+++++ G ++++G K + L N + + P L++
Sbjct: 241 DNQKVEFVA--CGGSHSALLTQDGLLFTFGAGK------HGQLGHNSTQNELRPCLVAEL 292
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ Q+ACG HT+ D K++S+G G+ G LG G T D P V
Sbjct: 293 VGY-----RVTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGNGGTRDQLMPLPV 342
>gi|187954501|gb|AAI40717.1| Hect domain and RLD 5 [Homo sapiens]
Length = 1024
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 100/205 (48%), Gaps = 23/205 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G SLA+ G L+ WG G S+ TP V G + ++
Sbjct: 139 KIIQITCGDYHSLALSKGGELFAWGQN--LHGQLGVGRKFPSTTTPQIVEHLAGVPLAQI 196
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL +G YSWG N GQLGLG ES+ P +IE + V
Sbjct: 197 SAGEAHSMALSMSGNI--------YSWGKNECGQLGLGHTESKDDPSLIEGLDNQK---V 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
V CG H+ALLT + + +TFG G++GQLGH +TQ+ L P V EL Y
Sbjct: 246 EFVACGGSHSALLTQ--------DGLLFTFGAGKHGQLGHNSTQNELRPCLVAELVGY-R 296
Query: 183 LVSVDCGLFHT-SVVSSAGDVWSWG 206
+ + CG +HT + VS G V+S+G
Sbjct: 297 VTQIACGRWHTLAYVSDLGKVFSFG 321
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 34/235 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
++++ CG H +AL GE + +WG N +GQLG+G + S P+I+E
Sbjct: 140 IIQITCGDYHSLALSKGGELF--------AWGQNLHGQLGVGRKFPSTTTPQIVEHL-AG 190
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +++ G H+ L+ + +++G E GQLG G T+S P ++ L
Sbjct: 191 VPLA--QISAGEAHSMALS--------MSGNIYSWGKNECGQLGLGHTESKDDPSLIEGL 240
Query: 178 P-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q V V+ CG H+++++ G ++++G K + L N + + P L++
Sbjct: 241 DNQKVEFVA--CGGSHSALLTQDGLLFTFGAGK------HGQLGHNSTQNELRPCLVAEL 292
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ Q+ACG HT+ D K++S+G G+ G LG G T D P V
Sbjct: 293 VGY-----RVTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGNGGTRDQLMPLPV 342
>gi|158300884|ref|XP_552411.3| AGAP011823-PA [Anopheles gambiae str. PEST]
gi|157013375|gb|EAL38855.3| AGAP011823-PA [Anopheles gambiae str. PEST]
Length = 4947
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 141/291 (48%), Gaps = 41/291 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG + G + ++ P + + +ACG
Sbjct: 3119 AVHSGGKHAMALTLDGKVFSWGEG---EDGKLGHGNRLTLEKPKLIETLRTKRIRDIACG 3175
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE Y+WG G+LG GD ++L+PK++ QD V +V
Sbjct: 3176 SSHSAAITSSGE--------LYTWGLGEYGRLGHGDNCTQLKPKLVTAL-QDH--RVVQV 3224
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L + + + +++G G+ G+LG G ++ +P QV L V ++
Sbjct: 3225 ACGSRDAQTLCLTE------DGLVFSWGDGDFGKLGRGGSEGCSIPHQVDRL-NGVGVMQ 3277
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ AG+VW+WG KG LG + + + +PI G G
Sbjct: 3278 IECGAQFSLALTKAGEVWTWG--KGDYYRLGHGTDQHVRKP------TPI----QGLRGK 3325
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
K + VA GA H + VTD G ++++WG G G+G TI P++VL
Sbjct: 3326 KV---IHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGSGNTIVNKKPSLVL 3372
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 117/251 (46%), Gaps = 34/251 (13%)
Query: 44 SSFTPSPVWDFHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD 101
S TP+ V + KVA G +H +AL S GE + SWG +G+LG G+
Sbjct: 4161 SVTTPTLVESLQHVMIKKVAVNSGGKHCLALSSDGEVF--------SWGEGEDGKLGHGN 4212
Query: 102 RESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
R+S RPK+IE+ S V ++ CGS H+A +T ++ T+G G G+LG
Sbjct: 4213 RDSYDRPKLIESL---SGIGVVDIACGSAHSACIT--------IQGHVLTWGKGRYGRLG 4261
Query: 162 HGTTQSALVPEQVKELPQYVYL-VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
HG ++ L P+ V+ L Y + ++ G T ++ +VWSWG + G L
Sbjct: 4262 HGDSEDQLQPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWG-DGDYG-----KLG 4315
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
R + P+ I G +V CG+ +V +T G +++WG+G LG G
Sbjct: 4316 RGGSDGCKVPMKIESLAGLG-----VTKVECGSQFSVALTRSG-SVYTWGKGDYHRLGHG 4369
Query: 281 KTIDFFAPAIV 291
T P V
Sbjct: 4370 NTDHVRRPKKV 4380
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 131/295 (44%), Gaps = 41/295 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
M + +V +GG LA+ + G ++ WG + G + S P + G VV
Sbjct: 4175 MIKKVAVNSGGKHCLALSSDGEVFSWGEG---EDGKLGHGNRDSYDRPKLIESLSGIGVV 4231
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+ACGS H SA T +G L +WG G+LG GD E +L+PK++E +
Sbjct: 4232 DIACGSAH-----SACITIQGHVL---TWGKGRYGRLGHGDSEDQLQPKLVEAL---LGY 4280
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
++ CGS L N W++G G+ G+LG G + VP +++ L
Sbjct: 4281 RAIDIACGSGDAQTLCITDDDN------VWSWGDGDYGKLGRGGSDGCKVPMKIESLAG- 4333
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGN 236
+ + V+CG + ++ +G V++WG KG LG + R + A+
Sbjct: 4334 LGVTKVECGSQFSVALTRSGSVYTWG--KGDYHRLGHGNTDHVRRPKKVAAL-------- 4383
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V +D G ++++WG G LG G P +V
Sbjct: 4384 --QGKKI---ISIATGSLHCVACSDAG-EVFTWGDNDEGQLGDGTVSAIQRPRLV 4432
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 114/237 (48%), Gaps = 34/237 (14%)
Query: 58 TVVKVA--CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
T+V++A C HV+AL S+G+ Y SWG+ + G+LG GD ++ P I
Sbjct: 608 TIVQLAAHCEGRHVLALASSGDVY--------SWGSGDGGRLGHGDTSAKELPTRIAALA 659
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V+ CGS ++A +T +T+G G G+LGHG ++ VP V
Sbjct: 660 DRQVTGVF---CGSSYSAAIT--------ASGELYTWGRGTYGRLGHGNSEDKYVPTLVT 708
Query: 176 ELPQY-VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS 234
L + V V++ CG H+ V+ AG ++WG + G N S G ++ P+ +
Sbjct: 709 ALKAHRVVHVALGCGDAHSLCVTEAGLAFAWG-DGDFGKLGNESCV----GTSV-PVQVD 762
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P+ V+V G+ +V +T +G +++WG+G G LG G + P +V
Sbjct: 763 -----LPQASCVVKVFSGSQFSVALTREG-TVYTWGKGHGGRLGHGNSEHSPVPKMV 813
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 28/203 (13%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC--GSFHTALLTHRK 139
+D Y+ G NG+LGLG + PK + +Q + V +V G H LT
Sbjct: 3078 QDGKLYACGEGTNGRLGLGHNNNVPTPKQVPILSQ---YVVKKVAVHSGGKHAMALT--- 3131
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
L+ +++G GE+G+LGHG + P+ ++ L + + + CG H++ ++S+
Sbjct: 3132 -----LDGKVFSWGEGEDGKLGHGNRLTLEKPKLIETL-RTKRIRDIACGSSHSAAITSS 3185
Query: 200 GDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTV 257
G++++WG+ + L + + P L++ H VQVACG+ A T+
Sbjct: 3186 GELYTWGLGE------YGRLGHGDNCTQLKPKLVTALQDH-----RVVQVACGSRDAQTL 3234
Query: 258 LVTDDGYKLWSWGRGRSGVLGTG 280
+T+DG ++SWG G G LG G
Sbjct: 3235 CLTEDGL-VFSWGDGDFGKLGRG 3256
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 106/237 (44%), Gaps = 34/237 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS---FTPSPVWDFHGHTV 59
Q+ V G S AI +G L+ WG T G +S + P+ V H V
Sbjct: 662 QVTGVFCGSSYSAAITASGELYTWGR------GTYGRLGHGNSEDKYVPTLVTALKAHRV 715
Query: 60 VKVA--CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V VA CG H + + AG + ++WG + G+LG ES + + +
Sbjct: 716 VHVALGCGDAHSLCVTEAG--------LAFAWGDGDFGKLG---NESCVGTSVPVQVDLP 764
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V +V GS + LT E +T+G G G+LGHG ++ + VP+ V+ L
Sbjct: 765 QASCVVKVFSGSQFSVALTR--------EGTVYTWGKGHGGRLGHGNSEHSPVPKMVQAL 816
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS 234
+ +V + GL H ++++G+++ WG +CP +TR+ A PIL +
Sbjct: 817 -EGKKIVDLAVGLAHCLALTASGELYGWGRNDFQQICPEC-VTRDPIITA--PILTT 869
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G S+A+ +G+++ WG D G + P V G ++ +A
Sbjct: 4336 VTKVECGSQFSVALTRSGSVYTWGKG---DYHRLGHGNTDHVRRPKKVAALQGKKIISIA 4392
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H VA AGE + +WG N+ GQLG G + RP+++++ +
Sbjct: 4393 TGSLHCVACSDAGEVF--------TWGDNDEGQLGDGTVSAIQRPRLVQSLQGKH---IV 4441
Query: 124 EVTCGSFHTALLT 136
+V CGS HT L+
Sbjct: 4442 KVICGSAHTLALS 4454
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 77/190 (40%), Gaps = 23/190 (12%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +L I + +W WG+ D G P + G V KV CGS+
Sbjct: 4289 SGDAQTLCITDDDNVWSWGDG---DYGKLGRGGSDGCKVPMKIESLAGLGVTKVECGSQF 4345
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL +G Y +WG + +LG G+ + RPK + + + G
Sbjct: 4346 SVALTRSGSVY--------TWGKGDYHRLGHGNTDHVRRPKKVAALQGKK---IISIATG 4394
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
S H + D E W G + GQLG GT + P V+ L Q ++V V C
Sbjct: 4395 SLHCVACS------DAGEVFTW--GDNDEGQLGDGTVSAIQRPRLVQSL-QGKHIVKVIC 4445
Query: 189 GLFHTSVVSS 198
G HT +S+
Sbjct: 4446 GSAHTLALST 4455
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 91/205 (44%), Gaps = 26/205 (12%)
Query: 89 WGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLES 147
WG N+ QLG G + S+++ P +Q P + GS +++ +
Sbjct: 3033 WGLNDKEQLG-GLKGSKVKLPTYSSVLSQLKP---IHIAGGSKSLFIVSQ--------DG 3080
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVDCGLFHTSVVSSAGDVWSWG 206
+ G G NG+LG G + P+QV L QYV V+V G H ++ G V+SWG
Sbjct: 3081 KLYACGEGTNGRLGLGHNNNVPTPKQVPILSQYVVKKVAVHSGGKHAMALTLDGKVFSWG 3140
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
+ L LT + P LI + +D +ACG++H+ +T G +L
Sbjct: 3141 EGEDGKLGHGNRLTLEK------PKLI--ETLRTKRIRD---IACGSSHSAAITSSG-EL 3188
Query: 267 WSWGRGRSGVLGTGKTIDFFAPAIV 291
++WG G G LG G P +V
Sbjct: 3189 YTWGLGEYGRLGHGDNCTQLKPKLV 3213
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ ++ G SLA+ AG +W WG D G + P+P+ G V+ VA
Sbjct: 3275 VMQIECGAQFSLALTKAGEVWTWGK---GDYYRLGHGTDQHVRKPTPIQGLRGKKVIHVA 3331
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ +G+ Y+WG N++GQ G G+ +P ++ D + V
Sbjct: 3332 VGALHCLAVTDSGQV--------YAWGDNDHGQQGSGNTIVNKKPSLV--LGLDGIF-VN 3380
Query: 124 EVTCGSFHT 132
V CGS H+
Sbjct: 3381 RVACGSSHS 3389
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 98/209 (46%), Gaps = 30/209 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
+ WG N+ GQLG D P E + P ++ G +T P+ L
Sbjct: 4092 FGWGHNHRGQLGGLDGSRIKNPTPCEALSLLRP---IQIAGGEQTLYAVT----PDGKL- 4143
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T S P V+ L Q+V + V+V+ G H +SS G+V+S
Sbjct: 4144 ---YATGYGAGGRLGVGGTDSVTTPTLVESL-QHVMIKKVAVNSGGKHCLALSSDGEVFS 4199
Query: 205 WGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG E G LG S R + +++S I + V +ACG+AH+ +T
Sbjct: 4200 WGEGEDGKLGHGNRDSYDRPKLIESLSGIGV-------------VDIACGSAHSACITIQ 4246
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ L +WG+GR G LG G + D P +V
Sbjct: 4247 GHVL-TWGKGRYGRLGHGDSEDQLQPKLV 4274
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 11/145 (7%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG T + +P ++ L + V CG +++ ++++G++++WG +
Sbjct: 631 YSWGSGDGGRLGHGDTSAKELPTRIAALADR-QVTGVFCGSSYSAAITASGELYTWG--R 687
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
G L + D P L++ H V + CG AH++ VT+ G ++W
Sbjct: 688 G----TYGRLGHGNSEDKYVPTLVTALKAHRVVH---VALGCGDAHSLCVTEAGLA-FAW 739
Query: 270 GRGRSGVLGTGKTIDFFAPAIVLWP 294
G G G LG + P V P
Sbjct: 740 GDGDFGKLGNESCVGTSVPVQVDLP 764
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 171 PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP 230
P QVK L + ++ C H ++S+GDV+SWG G G + + E I+
Sbjct: 599 PAQVKGLECTIVQLAAHCEGRHVLALASSGDVYSWGSGDG-GRLGHGDTSAKELPTRIAA 657
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ + V CG++++ +T G +L++WGRG G LG G + D + P +
Sbjct: 658 L----------ADRQVTGVFCGSSYSAAITASG-ELYTWGRGTYGRLGHGNSEDKYVPTL 706
Query: 291 V 291
V
Sbjct: 707 V 707
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G + LA+ ++G ++ WG+ D +G + + + PS V G V +V
Sbjct: 3326 KVIHVAVGALHCLAVTDSGQVYAWGD---NDHGQQGSGNTIVNKKPSLVLGLDGIFVNRV 3382
Query: 63 ACGSEHVVA 71
ACGS H VA
Sbjct: 3383 ACGSSHSVA 3391
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I S+ G + +A +AG ++ WG+ D G ++ + P V G +VKV
Sbjct: 4387 KIISIATGSLHCVACSDAGEVFTWGD---NDEGQLGDGTVSAIQRPRLVQSLQGKHIVKV 4443
Query: 63 ACGSEHVVAL 72
CGS H +AL
Sbjct: 4444 ICGSAHTLAL 4453
>gi|328793081|ref|XP_395007.4| PREDICTED: e3 ubiquitin-protein ligase HERC2 [Apis mellifera]
Length = 4643
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 134/290 (46%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG D G + +S P + + G +V +ACG
Sbjct: 3875 AVNSGGKHCLALSSEGHVYSWGE---GDDGKLGHGNRLSYDRPKLIEELLGTEIVDIACG 3931
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H A+ SAG Y+WG G+LG GD E +L PK+IE QD + V +V
Sbjct: 3932 GHHSAAITSAG--------WLYTWGKGRYGRLGHGDSEDQLTPKLIEAL-QD--YKVIDV 3980
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + +P +++ L + ++
Sbjct: 3981 ACGSGDAQTLCVTDDDN------VWSWGDGDYGKLGRGGSDGCKIPMKIESLAG-LGVIK 4033
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G +++WG KG LG + + R A+ G
Sbjct: 4034 VECGSQFSVALTRSGAIYTWG--KGDYHRLGHGTDDHVRRPRKVAAL----------QGK 4081
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V TD G ++++WG G LG G T P +V
Sbjct: 4082 KI---ISIATGSLHCVACTDKG-EVFTWGDNDEGQLGDGTTSALQRPRLV 4127
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 131/288 (45%), Gaps = 37/288 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + +S P + + +ACG
Sbjct: 2881 AVHSGGKHALALTQDGKVFSWGE---GEDGKLGHGNSISLDKPRLIESLKSKRIRDIACG 2937
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE Y+WG G+LG GD ++ +PK++++ V ++
Sbjct: 2938 SGHSAAITSSGE--------LYTWGLGEYGRLGHGDTATQSKPKLVQSLVGQR---VIQI 2986
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + + +++G G+ G+LG G + P + L + +
Sbjct: 2987 ACGSRDAQTMALT--------ADGLVYSWGDGDFGKLGRGGSDGCYTPLLIDRL-NGLGV 3037
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
V ++CG + ++ G+VW+WG KG L P L+ G G K
Sbjct: 3038 VQIECGAQFSLALTKYGEVWTWG--KG----DYFRLGHGNDHHVRKPTLVE--GLRGKKI 3089
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ VA GA H + VTD G ++++WG G G G TI P++V
Sbjct: 3090 ---IHVAVGALHCLAVTDIG-QVYAWGDNDHGQQGNGTTIVNKKPSLV 3133
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 116/247 (46%), Gaps = 34/247 (13%)
Query: 48 PSPVWDFHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P P+ + + KVA G +H +AL G+ + SWG +G+LG G+ S
Sbjct: 2866 PKPIPFLSQYVIKKVAVHSGGKHALALTQDGKVF--------SWGEGEDGKLGHGNSISL 2917
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
+P++IE+ + ++ CGS H+A +T +T+GLGE G+LGHG T
Sbjct: 2918 DKPRLIESLKSKR---IRDIACGSGHSAAITSSGE--------LYTWGLGEYGRLGHGDT 2966
Query: 166 QSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA 224
+ P+ V+ L Q V ++ T +++ G V+SWG + G L R +
Sbjct: 2967 ATQSKPKLVQSLVGQRVIQIACGSRDAQTMALTADGLVYSWG-DGDFG-----KLGRGGS 3020
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
+P+LI G VQ+ CGA ++ +T G ++W+WG+G LG G
Sbjct: 3021 DGCYTPLLIDRLNGLG-----VVQIECGAQFSLALTKYG-EVWTWGKGDYFRLGHGNDHH 3074
Query: 285 FFAPAIV 291
P +V
Sbjct: 3075 VRKPTLV 3081
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 125/275 (45%), Gaps = 41/275 (14%)
Query: 22 ALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD--FHGHTVVKVACGSEHVVALVSAGETY 79
A+++WG L D GG L S PV+ V +A GS+ + + G+
Sbjct: 2791 AVYVWG---LNDKDQLGG--LKGSKIKLPVYSEVLSKLKPVHIAGGSKTLFVVSQEGK-- 2843
Query: 80 KGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRK 139
Y+ G NG+LGLGD + PK I +Q V V G H LT
Sbjct: 2844 ------LYACGEGTNGRLGLGDDSNVCEPKPIPFLSQYVIKKV-AVHSGGKHALALTQ-- 2894
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
+ +++G GE+G+LGHG + S P ++ L + + + CG H++ ++S+
Sbjct: 2895 ------DGKVFSWGEGEDGKLGHGNSISLDKPRLIESL-KSKRIRDIACGSGHSAAITSS 2947
Query: 200 GDVWSWGM-EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHT 256
G++++WG+ E G L + P L+ Q +Q+ACG+ A T
Sbjct: 2948 GELYTWGLGEYG-------RLGHGDTATQSKPKLV-----QSLVGQRVIQIACGSRDAQT 2995
Query: 257 VLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +T DG ++SWG G G LG G + + P ++
Sbjct: 2996 MALTADGL-VYSWGDGDFGKLGRGGSDGCYTPLLI 3029
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 108/262 (41%), Gaps = 44/262 (16%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFH 55
++I + GG S AI +AG L+ WG +G + + TP +
Sbjct: 3923 TEIVDIACGGHHSAAITSAGWLYTWG---------KGRYGRLGHGDSEDQLTPKLIEALQ 3973
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
+ V+ VACGS L +D +SWG + G+LG G + P IE+
Sbjct: 3974 DYKVIDVACGSGDAQTLCVT------DDDNVWSWGDGDYGKLGRGGSDGCKIPMKIESL- 4026
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
+ V +V CGS + LT +T+G G+ +LGHGT P +V
Sbjct: 4027 --AGLGVIKVECGSQFSVALTR--------SGAIYTWGKGDYHRLGHGTDDHVRRPRKVA 4076
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q ++S+ G H + G+V++WG + GD + L
Sbjct: 4077 AL-QGKKIISIATGSLHCVACTDKGEVFTWGDND-----------EGQLGDGTTSALQRP 4124
Query: 236 NGPHGPKFQDPVQVACGAAHTV 257
H + + +VACG+AHT+
Sbjct: 4125 RLVHALQGKKITRVACGSAHTL 4146
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 26/207 (12%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P + E+ + P ++T G +T +
Sbjct: 3787 YGWGHNHRGQLGGLEGAKVKLPVLCESLSALRP---VQLTGGEQTLFAVT--------AD 3835
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T S +VP ++ + Q+V++ V+V+ G H +SS G V+S
Sbjct: 3836 GKVYATGYGAVGRLGIGGTDSVMVPTLLESI-QHVFVKKVAVNSGGKHCLALSSEGHVYS 3894
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG E G + + + I +L + + V +ACG H+ +T G+
Sbjct: 3895 WG-EGDDGKLGHGNRLSYDRPKLIEELLGT----------EIVDIACGGHHSAAITSAGW 3943
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
L++WG+GR G LG G + D P ++
Sbjct: 3944 -LYTWGKGRYGRLGHGDSEDQLTPKLI 3969
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 111/257 (43%), Gaps = 53/257 (20%)
Query: 54 FHGHTVVKVACGSEHVVALVSA---GETYKG--EDLVCYSWGANNNGQLGLGDRESRLRP 108
++G +V SE + ++++ G Y +D YSWG G+LG G+ P
Sbjct: 486 YYGSETQRVYGFSEKPITMIASHSDGTHYLALTQDNSVYSWGNGECGRLGHGNMTWYDEP 545
Query: 109 KIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT-QS 167
K+IE + + + + CGS ++A L+ +T+G G G+LGHG + +
Sbjct: 546 KLIEALVEKN---ITFIACGSTYSAALSSNGE--------LYTWGRGNYGKLGHGNSDKD 594
Query: 168 ALVPEQVKELPQYVYLVSVDCG---LFHTSVVSSAGDVWSWGM----EKGLGLCPNASLT 220
++P V L ++ +V V CG T V+++G V+SWG + G G C
Sbjct: 595 VMIPTLVTALNGHM-VVYVACGGGRDPQTLCVTASGIVFSWGDGNHGKLGRGGC------ 647
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRS 274
+G PK D + +V CG + +T G ++++WG+G
Sbjct: 648 ---------------DGSKTPKIVDKLLDINVAKVYCGQQFSAALTAYG-EVYTWGKGED 691
Query: 275 GVLGTGKTIDFFAPAIV 291
LG G P I+
Sbjct: 692 YKLGHGNEDHVRYPKII 708
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 99/243 (40%), Gaps = 39/243 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G S A+ + G L+ WG G S P+ V +GH VV VA
Sbjct: 556 ITFIACGSTYSAALSSNGELYTWGRGNY--GKLGHGNSDKDVMIPTLVTALNGHMVVYVA 613
Query: 64 CG---SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
CG + + ++G + +SWG N+G+LG G + PKI++ +
Sbjct: 614 CGGGRDPQTLCVTASG--------IVFSWGDGNHGKLGRGGCDGSKTPKIVDKLLDINVA 665
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
VY CG +A LT +T+G GE+ +LGHG P ++ ++ +
Sbjct: 666 KVY---CGQQFSAALTAYGE--------VYTWGKGEDYKLGHGNEDHVRYP-KIIDILKT 713
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWG------MEKGLG-------LCPNASLTRNEAGDA 227
+ + G H ++ V+ WG ++ LG LCP S +N G A
Sbjct: 714 KKIKDLYIGHLHVLALTEDQLVYGWGRNDHGQIDPALGTIVPEPTLCPTFS-GKNVIGLA 772
Query: 228 ISP 230
P
Sbjct: 773 CGP 775
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ ++ G SLA+ G +W WG D G + P+ V G ++ VA
Sbjct: 3037 VVQIECGAQFSLALTKYGEVWTWGK---GDYFRLGHGNDHHVRKPTLVEGLRGKKIIHVA 3093
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ G+ Y+WG N++GQ G G +P ++ + V
Sbjct: 3094 VGALHCLAVTDIGQV--------YAWGDNDHGQQGNGTTIVNKKPSLVHELDDAR---VN 3142
Query: 124 EVTCGSFHT 132
V+CGS H+
Sbjct: 3143 RVSCGSSHS 3151
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 25/189 (13%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
C + M+L D G ++ WG+ D G +TP + +G VV++ C
Sbjct: 2988 CGSRDAQTMALTAD--GLVYSWGD---GDFGKLGRGGSDGCYTPLLIDRLNGLGVVQIEC 3042
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G++ +AL GE ++WG + +LG G+ +P ++E +
Sbjct: 3043 GAQFSLALTKYGEV--------WTWGKGDYFRLGHGNDHHVRKPTLVEGLRGKK---IIH 3091
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
V G+ H +T D+ + W G ++GQ G+GTT P V EL +
Sbjct: 3092 VAVGALHCLAVT------DIGQVYAW--GDNDHGQQGNGTTIVNKKPSLVHELDD-ARVN 3142
Query: 185 SVDCGLFHT 193
V CG H+
Sbjct: 3143 RVSCGSSHS 3151
>gi|383865452|ref|XP_003708187.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Megachile
rotundata]
Length = 4755
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 134/290 (46%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG D G + +S P + + G +V VACG
Sbjct: 3987 AVNSGGKHCLALSSEGHVYSWGE---GDDGKLGHGNRLSYDRPKLIEELLGTEIVDVACG 4043
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H A+ SAG Y+WG G+LG GD E +L PK++E QD + V +V
Sbjct: 4044 GHHSAAITSAG--------WLYTWGKGRYGRLGHGDSEDQLTPKLVEAL-QD--YKVIDV 4092
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + VP +++ L + ++
Sbjct: 4093 ACGSGDAQTLCVTDDDN------VWSWGDGDYGKLGRGGSDGCKVPMKIESLAG-LGVIK 4145
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G +++WG KG LG + + R A+ G
Sbjct: 4146 VECGSQFSVALTRSGSIYTWG--KGDYHRLGHGTDDHVRRPRKVAAL----------QGK 4193
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V +D G ++++WG G LG G T P +V
Sbjct: 4194 KI---ISIATGSLHCVACSDKG-EVFTWGDNDEGQLGDGTTCALQRPRLV 4239
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 130/288 (45%), Gaps = 37/288 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + S P + + VACG
Sbjct: 3000 AVHSGGKHALALTQDGRVFSWGE---GEDGKLGHGNCSSLDKPRLIESLKSKRIRDVACG 3056
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE Y+WG G+LG GD ++L+PK++++ V +V
Sbjct: 3057 SGHSAAITSSGE--------LYTWGLGEYGRLGHGDTNTQLKPKLVQSLVGQR---VIQV 3105
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + +++G G+ G+LG G + P V L + +
Sbjct: 3106 ACGSRDAQTMALT--------ADGSVYSWGDGDFGKLGRGGSDGCYTPLLVDRL-NGLGV 3156
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
V ++CG + ++ G+VW+WG KG L P L+ G G K
Sbjct: 3157 VQIECGAQFSLALTKYGEVWTWG--KG----DYFRLGHGNDHHVRKPTLV--EGLRGKKV 3208
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ VA GA H + VTD G ++++WG G G G TI P++V
Sbjct: 3209 ---IHVAVGALHCLAVTDTG-QVYAWGDNDHGQQGNGSTIVNKKPSLV 3252
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 116/247 (46%), Gaps = 34/247 (13%)
Query: 48 PSPVWDFHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P P+ + + KVA G +H +AL G + SWG +G+LG G+ S
Sbjct: 2985 PKPIPFLSQYVIKKVAVHSGGKHALALTQDGRVF--------SWGEGEDGKLGHGNCSSL 3036
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
+P++IE+ + +V CGS H+A +T +T+GLGE G+LGHG T
Sbjct: 3037 DKPRLIESLKSKR---IRDVACGSGHSAAITS--------SGELYTWGLGEYGRLGHGDT 3085
Query: 166 QSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA 224
+ L P+ V+ L Q V V+ T +++ G V+SWG + G L R +
Sbjct: 3086 NTQLKPKLVQSLVGQRVIQVACGSRDAQTMALTADGSVYSWG-DGDFG-----KLGRGGS 3139
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
+P+L+ G VQ+ CGA ++ +T G ++W+WG+G LG G
Sbjct: 3140 DGCYTPLLVDRLNGLG-----VVQIECGAQFSLALTKYG-EVWTWGKGDYFRLGHGNDHH 3193
Query: 285 FFAPAIV 291
P +V
Sbjct: 3194 VRKPTLV 3200
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 104/223 (46%), Gaps = 34/223 (15%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V G +H +AL S G Y SWG ++G+LG G+R S RPK+IE
Sbjct: 3986 VAVNSGGKHCLALSSEGHVY--------SWGEGDDGKLGHGNRLSYDRPKLIEELLGTE- 4036
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ +V CG H+A +T +T+G G G+LGHG ++ L P+ V+ L
Sbjct: 4037 --IVDVACGGHHSAAITS--------AGWLYTWGKGRYGRLGHGDSEDQLTPKLVEALQD 4086
Query: 180 YVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
Y ++ V CG T V+ +VWSWG + G L R + P+ I
Sbjct: 4087 Y-KVIDVACGSGDAQTLCVTDDDNVWSWG-DGDYG-----KLGRGGSDGCKVPMKIESLA 4139
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
G ++V CG+ +V +T G +++WG+G LG G
Sbjct: 4140 GLG-----VIKVECGSQFSVALTRSG-SIYTWGKGDYHRLGHG 4176
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 109/258 (42%), Gaps = 36/258 (13%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
++I V GG S AI +AG L+ WG G TP V + V+
Sbjct: 4035 TEIVDVACGGHHSAAITSAGWLYTWGK---GRYGRLGHGDSEDQLTPKLVEALQDYKVID 4091
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VACGS L +D +SWG + G+LG G + P IE+ +
Sbjct: 4092 VACGSGDAQTLCVT------DDDNVWSWGDGDYGKLGRGGSDGCKVPMKIESL---AGLG 4142
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V +V CGS + LT +T+G G+ +LGHGT P +V L Q
Sbjct: 4143 VIKVECGSQFSVALTR--------SGSIYTWGKGDYHRLGHGTDDHVRRPRKVAAL-QGK 4193
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
++S+ G H S G+V++WG E LG +L R P L+ H
Sbjct: 4194 KIISIATGSLHCVACSDKGEVFTWGDNDEGQLGDGTTCALQR--------PRLV-----H 4240
Query: 240 GPKFQDPVQVACGAAHTV 257
+ + +VACG+AHT+
Sbjct: 4241 ALQGKKITRVACGSAHTL 4258
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 108/247 (43%), Gaps = 56/247 (22%)
Query: 48 PSPVWDFHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P V+ F V +A +H +AL ED YSWG + G+LG GDR
Sbjct: 495 PQRVYGFSDKFVAMIASHPDGKHYLALT--------EDSSVYSWGNGDGGRLGHGDRTWY 546
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
PK+IE+ + + + CGS ++A L+ +T+G G G+LGHG +
Sbjct: 547 EEPKLIESLVDKN---ITFIACGSTYSAALSSNGE--------LYTWGRGNYGRLGHGNS 595
Query: 166 QSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASL 219
+VP V L ++ +V V CG T V+++G V+SWG + G G C
Sbjct: 596 DDVMVPTLVSALNGHM-IVYVACGSGDSQTLCVTASGIVFSWGDGDYGKLGRGGC----- 649
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGR 273
NG PK D + +V CG + +T G ++++WG+G
Sbjct: 650 ----------------NGSKTPKIVDKLLDINVAKVYCGGQFSAALTAYG-EVYTWGKGE 692
Query: 274 SGVLGTG 280
+ LG G
Sbjct: 693 AYRLGHG 699
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 108/257 (42%), Gaps = 36/257 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G S AI ++G L+ WG L + G + P V G V++V
Sbjct: 3049 RIRDVACGSGHSAAITSSGELYTWG---LGEYGRLGHGDTNTQLKPKLVQSLVGQRVIQV 3105
Query: 63 ACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
ACGS +AL + G Y SWG + G+LG G + P +++ N
Sbjct: 3106 ACGSRDAQTMALTADGSVY--------SWGDGDFGKLGRGGSDGCYTPLLVDRLNG---L 3154
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++ CG+ + LT WT+G G+ +LGHG P V+ L +
Sbjct: 3155 GVVQIECGAQFSLALTKYGE--------VWTWGKGDYFRLGHGNDHHVRKPTLVEGL-RG 3205
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++ V G H V+ G V++WG + G N S N+ P L+ H
Sbjct: 3206 KKVIHVAVGALHCLAVTDTGQVYAWG-DNDHGQQGNGSTIVNK-----KPSLV-----HE 3254
Query: 241 PKFQDPVQVACGAAHTV 257
+V+CG++H++
Sbjct: 3255 LDDARVNRVSCGSSHSI 3271
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 26/207 (12%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P + E+ + P ++T G +T +
Sbjct: 3899 YGWGHNHRGQLGGLEGAKVKLPVLCESLSALRP---VQLTGGEQTLFAVT--------AD 3947
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T S ++P ++ + Q+V++ V+V+ G H +SS G V+S
Sbjct: 3948 GKVYATGYGAVGRLGIGGTDSVMMPTLLESI-QHVFVKKVAVNSGGKHCLALSSEGHVYS 4006
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG E G + + + I +L + + V VACG H+ +T G+
Sbjct: 4007 WG-EGDDGKLGHGNRLSYDRPKLIEELLGT----------EIVDVACGGHHSAAITSAGW 4055
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
L++WG+GR G LG G + D P +V
Sbjct: 4056 -LYTWGKGRYGRLGHGDSEDQLTPKLV 4081
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 91/207 (43%), Gaps = 26/207 (12%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y WG N+ QLG G + S+++ P E+ ++ P + G T + +
Sbjct: 2912 YVWGLNDKDQLG-GLKGSKIKLPVYSESLSKLKPVHI----AGGSKTLFVVSQ------- 2959
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVDCGLFHTSVVSSAGDVWS 204
E + G G NG+LG G +A P+ + L QYV V+V G H ++ G V+S
Sbjct: 2960 EGKLYACGEGTNGRLGLGDDGNACEPKPIPFLSQYVIKKVAVHSGGKHALALTQDGRVFS 3019
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG + + L P LI + +D VACG+ H+ +T G
Sbjct: 3020 WGEGE------DGKLGHGNCSSLDKPRLI--ESLKSKRIRD---VACGSGHSAAITSSG- 3067
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+L++WG G G LG G T P +V
Sbjct: 3068 ELYTWGLGEYGRLGHGDTNTQLKPKLV 3094
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 94/230 (40%), Gaps = 38/230 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G S A+ + G L+ WG + G + P+ V +GH +V VA
Sbjct: 560 ITFIACGSTYSAALSSNGELYTWGR---GNYGRLGHGNSDDVMVPTLVSALNGHMIVYVA 616
Query: 64 CGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
CGS + + ++G + +SWG + G+LG G PKI++ +
Sbjct: 617 CGSGDSQTLCVTASG--------IVFSWGDGDYGKLGRGGCNGSKTPKIVDKLLDINVAK 668
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
VY CG +A LT +T+G GE +LGHG + P+ ++ L +
Sbjct: 669 VY---CGGQFSAALTAYGE--------VYTWGKGEAYRLGHGNEEHVRYPKAIEAL-KTK 716
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWG------MEKGLG-------LCPNAS 218
+ + G H ++ V+ WG ++ LG LCP S
Sbjct: 717 KVKELCVGSLHVLALTEDQLVYGWGRNDYGQIDPALGTIVSEPTLCPTLS 766
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 15/148 (10%)
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSW 205
+S +++G G+ G+LGHG P+ ++ L + + CG +++ +SS G++++W
Sbjct: 524 DSSVYSWGNGDGGRLGHGDRTWYEEPKLIESLVDK-NITFIACGSTYSAALSSNGELYTW 582
Query: 206 GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDG 263
G L + D + P L+S H V VACG+ + T+ VT G
Sbjct: 583 GRGN------YGRLGHGNSDDVMVPTLVSALNGHMI-----VYVACGSGDSQTLCVTASG 631
Query: 264 YKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++SWG G G LG G P IV
Sbjct: 632 I-VFSWGDGDYGKLGRGGCNGSKTPKIV 658
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G + LA+ + G ++ WG+ D +G S + + PS V + V +V
Sbjct: 3207 KVIHVAVGALHCLAVTDTGQVYAWGD---NDHGQQGNGSTIVNKKPSLVHELDDARVNRV 3263
Query: 63 ACGSEHVVALV 73
+CGS H +A V
Sbjct: 3264 SCGSSHSIAWV 3274
>gi|301117316|ref|XP_002906386.1| regulator of chromosome condensation (RCC1)-like protein
[Phytophthora infestans T30-4]
gi|262107735|gb|EEY65787.1| regulator of chromosome condensation (RCC1)-like protein
[Phytophthora infestans T30-4]
Length = 419
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 134/289 (46%), Gaps = 53/289 (18%)
Query: 7 VKAGGMMSLAIDNAGALWMWG-----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+ GG S A+ G L++WG LP E + P P + G T+VK
Sbjct: 108 ISCGGCHSAAVTKDGTLYVWGESHWGQLGLP-KEYEAAHESLPVKCPMPEGEA-GETIVK 165
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-------DRESRL---RPKII 111
V+CG H AL S G Y WG ++GQLG+G + ES + RP ++
Sbjct: 166 VSCGGTHTAALTSFGRV--------YVWGRGDSGQLGIGSVWMKDPENESLMGASRPHLL 217
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
+ FN + V +V CG+FH+A +T + + +G + G LG G + +P
Sbjct: 218 KAFNGEK---VVQVACGAFHSAAVTE--------QGHVYVWGKEDYGMLGVGQSSDQQIP 266
Query: 172 EQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAIS 229
++++ + ++ V CG +HT VV+ +GD +++G E G LGL S TR A+
Sbjct: 267 KRLEYFDD-IPVLRVSCGGWHTVVVAKSGDCYAFGRGEYGRLGLGDTKSRTRPHLVKAL- 324
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
K + +Q ACG +HT+ VT DG + GR G LG
Sbjct: 325 ------------KGKTVIQAACGGSHTLFVTSDG-TAYVAGRPDHGRLG 360
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 116/248 (46%), Gaps = 20/248 (8%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
+S P + + +V V+CGS H +AL S+G YSWG + GQLG GD +
Sbjct: 36 ASNFPQQIGNLPDEDIVAVSCGSRHTMALTSSGAV--------YSWGWGSMGQLGHGDLK 87
Query: 104 SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
P+ I F Q+ Y ++CG H+A +T ES GL + + H
Sbjct: 88 IINEPQKIAFFEQERLEVDY-ISCGGCHSAAVTKDGTLYVWGESHWGQLGLPKEYEAAH- 145
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE 223
+S V + E +V V CG HT+ ++S G V+ WG L + ++
Sbjct: 146 --ESLPVKCPMPEGEAGETIVKVSCGGTHTAALTSFGRVYVWGRGDSGQLGIGSVWMKDP 203
Query: 224 AGDAISPILISGNGPHGPKF---QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
++ L+ + PH K + VQVACGA H+ VT+ G+ ++ WG+ G+LG G
Sbjct: 204 ENES----LMGASRPHLLKAFNGEKVVQVACGAFHSAAVTEQGH-VYVWGKEDYGMLGVG 258
Query: 281 KTIDFFAP 288
++ D P
Sbjct: 259 QSSDQQIP 266
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 131/314 (41%), Gaps = 69/314 (21%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I +V G ++A+ ++GA++ WG + G +++ ++ V ++
Sbjct: 51 IVAVSCGSRHTMALTSSGAVYSWGWGSM-GQLGHGDLKIINEPQKIAFFEQERLEVDYIS 109
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW--- 120
CG H A+ +D Y WG ++ GQLGL PK E ++ P
Sbjct: 110 CGGCHSAAVT--------KDGTLYVWGESHWGQLGL--------PKEYEAAHESLPVKCP 153
Query: 121 --------AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT------- 165
+ +V+CG HTA LT R + +G G++GQLG G+
Sbjct: 154 MPEGEAGETIVKVSCGGTHTAALTSFGR--------VYVWGRGDSGQLGIGSVWMKDPEN 205
Query: 166 ---QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNAS 218
A P +K +V V CG FH++ V+ G V+ WG E G+G +
Sbjct: 206 ESLMGASRPHLLKAF-NGEKVVQVACGAFHSAAVTEQGHVYVWGKEDYGMLGVGQSSDQQ 264
Query: 219 L-TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
+ R E D I P+L +V+CG HTV+V G +++GRG G L
Sbjct: 265 IPKRLEYFDDI-PVL---------------RVSCGGWHTVVVAKSG-DCYAFGRGEYGRL 307
Query: 278 GTGKTIDFFAPAIV 291
G G T P +V
Sbjct: 308 GLGDTKSRTRPHLV 321
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 96/212 (45%), Gaps = 34/212 (16%)
Query: 83 DLVCYSWGANNNGQLGLGDRE-----------SRLRPKIIETFNQDSPWAVYEVTCGSFH 131
+ V ++G N++GQLG G + S +I ++D + V+CGS H
Sbjct: 5 ECVVTAFGCNDDGQLGTGAKRRPTLAIDDVSASNFPQQIGNLPDED----IVAVSCGSRH 60
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS-VDCGL 190
T LT +++G G GQLGHG + P+++ Q V + CG
Sbjct: 61 TMALTS--------SGAVYSWGWGSMGQLGHGDLKIINEPQKIAFFEQERLEVDYISCGG 112
Query: 191 FHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ 248
H++ V+ G ++ WG LGL P +E+ P+ P G + V+
Sbjct: 113 CHSAAVTKDGTLYVWGESHWGQLGL-PKEYEAAHESLPVKCPM------PEGEAGETIVK 165
Query: 249 VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
V+CG HT +T G +++ WGRG SG LG G
Sbjct: 166 VSCGGTHTAALTSFG-RVYVWGRGDSGQLGIG 196
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 22/176 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G S A+ G +++WG D G P + F V++V
Sbjct: 224 KVVQVACGAFHSAAVTEQGHVYVWGK---EDYGMLGVGQSSDQQIPKRLEYFDDIPVLRV 280
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+CG H V + +G+ CY++G G+LGLGD +SR RP +++ + V
Sbjct: 281 SCGGWHTVVVAKSGD--------CYAFGRGEYGRLGLGDTKSRTRPHLVKALKGKT---V 329
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ CG HT +T + + G ++G+LG ++ VP ++ P
Sbjct: 330 IQAACGGSHTLFVTS--------DGTAYVAGRPDHGRLGLADMKALGVPTRLDLGP 377
>gi|148908280|gb|ABR17254.1| unknown [Picea sitchensis]
Length = 286
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 113/239 (47%), Gaps = 31/239 (12%)
Query: 53 DFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE 112
D V+ ++ G+ H VALV+ +LVC SWG +GQLG GD E R P +
Sbjct: 10 DGQRRKVLLISAGASHTVALVAG-------NLVC-SWGRGEDGQLGHGDAEDRPMPTFVS 61
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPE 172
+ + V CG+ HT + + + +++G G+ G+LGHG + +P
Sbjct: 62 ALD---GCEITSVICGADHTTAYSDSRL-------VVYSWGWGDFGRLGHGNSSDLFIPH 111
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
+K L Q + + + CG H V+ G+V SWG + N L + D P
Sbjct: 112 AIKTL-QGLQIKQIACGDSHCLAVTINGEVQSWGRNQ------NGQLGVGDNIDHSFPQR 164
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ P ++ VQV+CG HTV +T ++SWGRG SG LG G +D P ++
Sbjct: 165 VK-----LPAEEEVVQVSCGWRHTVAITGK-SNVFSWGRGTSGQLGHGDILDRNMPVLI 217
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 83/189 (43%), Gaps = 26/189 (13%)
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPE 172
T N V ++ G+ HT L + ++ ++G GE+GQLGHG + +P
Sbjct: 7 TRNDGQRRKVLLISAGASHTVAL--------VAGNLVCSWGRGEDGQLGHGDAEDRPMPT 58
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDV---WSWGMEKGLGLCPNASLTRNEAGDAIS 229
V L + SV CG HT+ S + V W WG LG ++ L A +
Sbjct: 59 FVSAL-DGCEITSVICGADHTTAYSDSRLVVYSWGWGDFGRLGHGNSSDLFIPHAIKTLQ 117
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA 289
+ I Q+ACG +H + VT +G ++ SWGR ++G LG G ID P
Sbjct: 118 GLQIK-------------QIACGDSHCLAVTING-EVQSWGRNQNGQLGVGDNIDHSFPQ 163
Query: 290 IVLWPPLTE 298
V P E
Sbjct: 164 RVKLPAEEE 172
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 29/152 (19%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
F P + G + ++ACG H +A+ GE SWG N NGQLG+GD
Sbjct: 108 FIPHAIKTLQGLQIKQIACGDSHCLAVTINGEV--------QSWGRNQNGQLGVGDNIDH 159
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
P+ ++ ++ V +V+CG HT +T + S +++G G +GQLGHG
Sbjct: 160 SFPQRVKLPAEEE---VVQVSCGWRHTVAITGK--------SNVFSWGRGTSGQLGHGDI 208
Query: 166 QSALVPEQVKELPQYVYLVSVD---CGLFHTS 194
+ +P + +SVD C TS
Sbjct: 209 LD-------RNMPVLIEALSVDGSACEQIQTS 233
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 11/122 (9%)
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
V E + Q ++ + G HT + + V SWG + + L +A D
Sbjct: 3 VEEATRNDGQRRKVLLISAGASHTVALVAGNLVCSWGRGE------DGQLGHGDAEDRPM 56
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA 289
P +S + V CGA HT +D ++SWG G G LG G + D F P
Sbjct: 57 PTFVSA-----LDGCEITSVICGADHTTAYSDSRLVVYSWGWGDFGRLGHGNSSDLFIPH 111
Query: 290 IV 291
+
Sbjct: 112 AI 113
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 11/115 (9%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI + G LA+ G + WG + G ++ SF P V VV+V
Sbjct: 120 QIKQIACGDSHCLAVTINGEVQSWGRNQ--NGQLGVGDNIDHSF-PQRVKLPAEEEVVQV 176
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+CG H VA+ + SWG +GQLG GD R P +IE + D
Sbjct: 177 SCGWRHTVAITGKSNVF--------SWGRGTSGQLGHGDILDRNMPVLIEALSVD 223
>gi|37695550|gb|AAR00320.1| HECT E3 ubiquitin ligase [Homo sapiens]
Length = 1024
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 101/209 (48%), Gaps = 31/209 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG----GFSLVSSFTPSPVWDFHGHT 58
+I + G SLA+ G L+ WG + G G S+ TP V G
Sbjct: 139 KIIQITCGDYHSLALSKGGELFAWG------QNLHGQLGVGRKFPSTTTPQIVEHLAGVP 192
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ +++ G H AL +G YSWG N GQLGLG ES+ P +IE +
Sbjct: 193 LAQISAGEAHSTALSMSGNI--------YSWGKNECGQLGLGHTESKDDPSLIEGLDNQK 244
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V V CG H+ALLT + + +TFG G++GQLGH +TQ+ L P V EL
Sbjct: 245 ---VEFVACGGSHSALLTQ--------DGLLFTFGAGKHGQLGHNSTQNELRPCLVAELV 293
Query: 179 QYVYLVSVDCGLFHT-SVVSSAGDVWSWG 206
Y + + CG +HT + VS G V+S+G
Sbjct: 294 GY-RVTQIACGRWHTLAYVSDLGKVFSFG 321
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 34/235 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
++++ CG H +AL GE + +WG N +GQLG+G + S P+I+E
Sbjct: 140 IIQITCGDYHSLALSKGGELF--------AWGQNLHGQLGVGRKFPSTTTPQIVEHL-AG 190
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +++ G H+ L+ + +++G E GQLG G T+S P ++ L
Sbjct: 191 VPLA--QISAGEAHSTALS--------MSGNIYSWGKNECGQLGLGHTESKDDPSLIEGL 240
Query: 178 P-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q V V+ CG H+++++ G ++++G K + L N + + P L++
Sbjct: 241 DNQKVEFVA--CGGSHSALLTQDGLLFTFGAGK------HGQLGHNSTQNELRPCLVAEL 292
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ Q+ACG HT+ D K++S+G G+ G LG G T D P V
Sbjct: 293 VGY-----RVTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGNGGTRDQLMPLPV 342
>gi|170050907|ref|XP_001861523.1| hect E3 ubiquitin ligase [Culex quinquefasciatus]
gi|167872400|gb|EDS35783.1| hect E3 ubiquitin ligase [Culex quinquefasciatus]
Length = 4784
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 138/291 (47%), Gaps = 41/291 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG + G + V+ P + + +ACG
Sbjct: 2998 AVHSGGKHAMALTLDGKVFSWGE---GEDGKLGHGNRVTLEKPKLLESLRTKRIRDIACG 3054
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE Y+WG G+LG GD ++L+PK++ V +V
Sbjct: 3055 SSHSAAITSSGE--------LYTWGLGEYGRLGHGDNCTQLKPKLVTALQGHR---VVQV 3103
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L + E + +++G G+ G+LG G ++ VP QV+ L V +V
Sbjct: 3104 ACGSRDAQTLCLTE------EGLVFSWGDGDFGKLGRGGSEGCSVPHQVERL-NGVGVVQ 3156
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ G+VW+WG KG LG + + + +PI G G
Sbjct: 3157 IECGAQFSLALTKIGEVWTWG--KGDYYRLGHGTDQHVRKP------TPI----QGLRGK 3204
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
K + VA GA H + VTD G ++++WG G G+G T+ P +VL
Sbjct: 3205 KV---IHVAVGALHCLAVTDSG-QVFAWGDNDHGQQGSGNTVVNKKPNLVL 3251
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 114/258 (44%), Gaps = 46/258 (17%)
Query: 41 SLVSSFTPSPVWDFHGHTVVKVA--CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG 98
S + P V G +V+++A C H +AL SAGE Y SWGA G+LG
Sbjct: 561 SCAETVAPKLVEGLEGVSVIQIAAHCEGRHAMALSSAGEVY--------SWGAGEGGRLG 612
Query: 99 LGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENG 158
GD S+ P I Q V + G+ ++A ++ +T+G G G
Sbjct: 613 HGDTASKEVPTKIALEKQ-----VTAIYAGASYSAAVSSVGE--------LFTWGRGTYG 659
Query: 159 QLGHGTTQSALVPEQVKELPQY-VYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGL 213
+LGHG + VP QV+ L Y V V++ G H+ V+ G +++WG + G G
Sbjct: 660 RLGHGNSDDKFVPTQVQALKAYKVVDVALGSGDAHSMAVTDGGLLFAWGDGDFGKLGNGS 719
Query: 214 CPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGR 273
C + L P+ I G ++ G+ +V ++ DG L+SWG+G
Sbjct: 720 CNGSPL----------PVQIEG-------VSSVARIYSGSQFSVALSYDG-TLYSWGKGH 761
Query: 274 SGVLGTGKTIDFFAPAIV 291
G LG G + P +V
Sbjct: 762 GGRLGHGNSEHSNVPKLV 779
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 122/274 (44%), Gaps = 55/274 (20%)
Query: 47 TPSPVWDFHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES 104
TP+ V + KVA G +H +AL S GE + SWG +G+LG G+R+S
Sbjct: 4019 TPTLVESLQHVIIKKVAVNSGGKHCLALSSDGEVF--------SWGEGEDGKLGHGNRDS 4070
Query: 105 RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
RPK+IE S V ++ CGS H+A +T + T+G G G+LGHG
Sbjct: 4071 YDRPKLIEAL---SGIGVVDIACGSAHSACITS--------QGHVLTWGKGRYGRLGHGD 4119
Query: 165 TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--------GLGLCP- 215
++ L P++ V ++ CG+ T++++S + G GLG+
Sbjct: 4120 SEDQLQPKRC------VLRTTIMCGVGVTAIMASLAEEVPMGARSPMKIESLAGLGVIKV 4173
Query: 216 ------NASLTRNEA----GDAISPILISGNGPH--GPKFQDPVQ------VACGAAHTV 257
+ +LTR+ + G L GN H PK +Q +A G+ H V
Sbjct: 4174 ECGSQFSVALTRSGSVYTWGKGDYHRLGHGNTDHVRRPKKVAALQGKKIISIATGSLHCV 4233
Query: 258 LVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+D G ++++WG G LG G P +V
Sbjct: 4234 ACSDSG-EVFTWGDNDEGQLGDGTVTAIQRPRLV 4266
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 119/288 (41%), Gaps = 67/288 (23%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + S P + G VV +ACG
Sbjct: 4035 AVNSGGKHCLALSSDGEVFSWGE---GEDGKLGHGNRDSYDRPKLIEALSGIGVVDIACG 4091
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK---------------- 109
S H + S G +WG G+LG GD E +L+PK
Sbjct: 4092 SAHSACITSQGHV--------LTWGKGRYGRLGHGDSEDQLQPKRCVLRTTIMCGVGVTA 4143
Query: 110 IIETFNQDSPW--------------AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG 155
I+ + ++ P V +V CGS + LT +T+G G
Sbjct: 4144 IMASLAEEVPMGARSPMKIESLAGLGVIKVECGSQFSVALTR--------SGSVYTWGKG 4195
Query: 156 ENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGL 213
+ +LGHG T P++V L Q ++S+ G H S +G+V++WG E LG
Sbjct: 4196 DYHRLGHGNTDHVRRPKKVAAL-QGKKIISIATGSLHCVACSDSGEVFTWGDNDEGQLGD 4254
Query: 214 CPNASLTRNEAGDAISPILI-SGNGPHGPKFQDPVQVACGAAHTVLVT 260
++ R P L+ S G H V+V CG+AHT+ ++
Sbjct: 4255 GTVTAIQR--------PRLVQSLQGKH------IVKVICGSAHTLALS 4288
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 30/204 (14%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC--GSFHTALLTHRK 139
+D Y+ G NG+LGLG + P+ + NQ + V +V G H LT
Sbjct: 2957 QDGKLYACGEGTNGRLGLGHNNNVPTPRQVPILNQ---YVVKKVAVHSGGKHAMALT--- 3010
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
L+ +++G GE+G+LGHG + P+ ++ L + + + CG H++ ++S+
Sbjct: 3011 -----LDGKVFSWGEGEDGKLGHGNRVTLEKPKLLESL-RTKRIRDIACGSSHSAAITSS 3064
Query: 200 GDVWSWGM-EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHT 256
G++++WG+ E G L + + P L++ H VQVACG+ A T
Sbjct: 3065 GELYTWGLGEYG-------RLGHGDNCTQLKPKLVTALQGH-----RVVQVACGSRDAQT 3112
Query: 257 VLVTDDGYKLWSWGRGRSGVLGTG 280
+ +T++G ++SWG G G LG G
Sbjct: 3113 LCLTEEGL-VFSWGDGDFGKLGRG 3135
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 33/219 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS---FTPSPVWDFHGHTV 59
Q+ ++ AG S A+ + G L+ WG T G +S F P+ V + V
Sbjct: 630 QVTAIYAGASYSAAVSSVGELFTWGR------GTYGRLGHGNSDDKFVPTQVQALKAYKV 683
Query: 60 VKVACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V VA GS H +A+ G + ++WG + G+LG G P IE +
Sbjct: 684 VDVALGSGDAHSMAVTDGG--------LLFAWGDGDFGKLGNGSCNGSPLPVQIEGVS-- 733
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+V + GS + L++ + +++G G G+LGHG ++ + VP+ V L
Sbjct: 734 ---SVARIYSGSQFSVALSY--------DGTLYSWGKGHGGRLGHGNSEHSNVPKLVHAL 782
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPN 216
+ +V V G H ++S+G+++ WG +CP+
Sbjct: 783 -EGKKIVDVAVGSAHCLALTSSGELYGWGRNDYQQICPS 820
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G S+A+ +G+++ WG D G + P V G ++ +A
Sbjct: 4170 VIKVECGSQFSVALTRSGSVYTWGK---GDYHRLGHGNTDHVRRPKKVAALQGKKIISIA 4226
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H VA +GE + +WG N+ GQLG G + RP+++++ +
Sbjct: 4227 TGSLHCVACSDSGEVF--------TWGDNDEGQLGDGTVTAIQRPRLVQSLQGKH---IV 4275
Query: 124 EVTCGSFHTALLT 136
+V CGS HT L+
Sbjct: 4276 KVICGSAHTLALS 4288
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 30/207 (14%)
Query: 89 WGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLES 147
WG N+ QLG G + S+++ P +Q P ++ GS +++ +
Sbjct: 2912 WGLNDKEQLG-GLKGSKVKLPTYSSVLSQLKP---IHISGGSKSLFIVSQ--------DG 2959
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVDCGLFHTSVVSSAGDVWSWG 206
+ G G NG+LG G + P QV L QYV V+V G H ++ G V+SWG
Sbjct: 2960 KLYACGEGTNGRLGLGHNNNVPTPRQVPILNQYVVKKVAVHSGGKHAMALTLDGKVFSWG 3019
Query: 207 M-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
E G LG +L + + +++ + +D +ACG++H+ +T G
Sbjct: 3020 EGEDGKLGHGNRVTLEKPKLLESL----------RTKRIRD---IACGSSHSAAITSSG- 3065
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+L++WG G G LG G P +V
Sbjct: 3066 ELYTWGLGEYGRLGHGDNCTQLKPKLV 3092
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 20/152 (13%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
+P + G V+KV CGS+ VAL +G Y +WG + +LG G+ +
Sbjct: 4158 SPMKIESLAGLGVIKVECGSQFSVALTRSGSVY--------TWGKGDYHRLGHGNTDHVR 4209
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
RPK + + + GS H + D E W G + GQLG GT
Sbjct: 4210 RPKKVAALQGKK---IISIATGSLHCVACS------DSGEVFTW--GDNDEGQLGDGTVT 4258
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSS 198
+ P V+ L Q ++V V CG HT +S+
Sbjct: 4259 AIQRPRLVQSL-QGKHIVKVICGSAHTLALST 4289
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 14/176 (7%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ ++ G SLA+ G +W WG D G + P+P+ G V+ VA
Sbjct: 3154 VVQIECGAQFSLALTKIGEVWTWGK---GDYYRLGHGTDQHVRKPTPIQGLRGKKVIHVA 3210
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ +G+ ++WG N++GQ G G+ +P ++ D + V
Sbjct: 3211 VGALHCLAVTDSGQV--------FAWGDNDHGQQGSGNTVVNKKPNLV--LGLDGVF-VN 3259
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V CGS H+ + + P++ + F + ++ H AL E PQ
Sbjct: 3260 RVACGSSHSVAWSLPQNPSEKDKKEPVPFAVSKDPLGSHSLGIYALDSEPTTSQPQ 3315
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 99/207 (47%), Gaps = 32/207 (15%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
+ WG N+ GQLG G SR++ P E + P + G T + P+ L
Sbjct: 3947 FGWGHNHRGQLG-GLDGSRIKMPTPCEALSLLRPIQI----AGGEQT---LYAVTPDGKL 3998
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVW 203
+ G G G+LG G T S P V+ L Q+V + V+V+ G H +SS G+V+
Sbjct: 3999 ----YATGYGAGGRLGIGGTDSVSTPTLVESL-QHVIIKKVAVNSGGKHCLALSSDGEVF 4053
Query: 204 SWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
SWG E G LG S R + +A+S I + V +ACG+AH+ +T
Sbjct: 4054 SWGEGEDGKLGHGNRDSYDRPKLIEALSGIGV-------------VDIACGSAHSACITS 4100
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAP 288
G+ L +WG+GR G LG G + D P
Sbjct: 4101 QGHVL-TWGKGRYGRLGHGDSEDQLQP 4126
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 116/267 (43%), Gaps = 49/267 (18%)
Query: 11 GMMSLAIDNAGALWMWGNCPLPDSSTEGGF----SLVSSFTPSPVWDFHGHTVVKVACGS 66
G ++A+ +AG ++ WG + EGG S P+ + V + G+
Sbjct: 588 GRHAMALSSAGEVYSWG-------AGEGGRLGHGDTASKEVPTKI--ALEKQVTAIYAGA 638
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
+ A+ S GE ++WG G+LG G+ + + P ++ + V +V
Sbjct: 639 SYSAAVSSVGE--------LFTWGRGTYGRLGHGNSDDKFVPTQVQALK---AYKVVDVA 687
Query: 127 CGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
GS H+ +T + + +G G+ G+LG+G+ + +P Q++ + +
Sbjct: 688 LGSGDAHSMAVTD--------GGLLFAWGDGDFGKLGNGSCNGSPLPVQIEGVSSVARIY 739
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
S G + +S G ++SWG KG G L + + P L+ H + +
Sbjct: 740 S---GSQFSVALSYDGTLYSWG--KGHG----GRLGHGNSEHSNVPKLV-----HALEGK 785
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGR 271
V VA G+AH + +T G +L+ WGR
Sbjct: 786 KIVDVAVGSAHCLALTSSG-ELYGWGR 811
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + + +G S+A+ G L+ WG G + S P V G +V
Sbjct: 732 VSSVARIYSGSQFSVALSYDGTLYSWGK---GHGGRLGHGNSEHSNVPKLVHALEGKKIV 788
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQL 97
VA GS H +AL S+GE Y WG N+ Q+
Sbjct: 789 DVAVGSAHCLALTSSGE--------LYGWGRNDYQQI 817
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G + LA+ ++G ++ WG+ D +G + V + P+ V G V +V
Sbjct: 3205 KVIHVAVGALHCLAVTDSGQVFAWGD---NDHGQQGSGNTVVNKKPNLVLGLDGVFVNRV 3261
Query: 63 ACGSEHVVA 71
ACGS H VA
Sbjct: 3262 ACGSSHSVA 3270
>gi|91202557|emb|CAJ72196.1| hypothetical protein kustd1451 [Candidatus Kuenenia
stuttgartiensis]
Length = 1413
Score = 99.4 bits (246), Expect = 3e-18, Method: Composition-based stats.
Identities = 83/292 (28%), Positives = 129/292 (44%), Gaps = 45/292 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT-V 59
++ + ++ G ++A+ + G +W WGN + G S TP V G T V
Sbjct: 192 LTDVIAIAGGAYHTIALKSDGTVWAWGN---NEGGQLGDGSTTDRSTPVQV---SGLTDV 245
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ +A G H +AL S G ++WG N G+LG G +R P + +
Sbjct: 246 IAIAGGYAHTIALKSDG--------TVWAWGDNEGGRLGDGSTTNRSIPVKVGGLSD--- 294
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V + G+ HT L + W +G E GQLG G+T + P +V L
Sbjct: 295 --VIAIAGGNAHTIALKS--------DGTVWAWGDNEGGQLGDGSTTNRSTPVKVSGLAD 344
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
++++ G HT V+ S G VW+WG +G L ++ R+ +P+ +SG
Sbjct: 345 ---VIAIAGGYSHTIVLRSDGTVWTWGHNEGGQLGDGSTTNRS------TPVQVSG---- 391
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D + +A G HT+ V DG +W+WG G LG G TI+ P V
Sbjct: 392 ---LADVIAIAGGVYHTIAVKSDG-TMWAWGYNWYGQLGDGTTINSSTPVQV 439
Score = 95.9 bits (237), Expect = 3e-17, Method: Composition-based stats.
Identities = 81/288 (28%), Positives = 123/288 (42%), Gaps = 49/288 (17%)
Query: 7 VKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ AG +L + GA+W WG N L D ST +PV V+ +A
Sbjct: 148 ISAGAYHTLTLKPDGAVWTWGANWNGQLGDESTTN--------RSTPVQVSGLTDVIAIA 199
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +AL S G ++WG N GQLG G R P + V
Sbjct: 200 GGAYHTIALKSDG--------TVWAWGNNEGGQLGDGSTTDRSTPVQVSGLTD-----VI 246
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
+ G HT L + W +G E G+LG G+T + +P +V L +
Sbjct: 247 AIAGGYAHTIALKS--------DGTVWAWGDNEGGRLGDGSTTNRSIPVKVGGLSD---V 295
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+++ G HT + S G VW+WG +G L ++ R+ +P+ +SG
Sbjct: 296 IAIAGGNAHTIALKSDGTVWAWGDNEGGQLGDGSTTNRS------TPVKVSG-------L 342
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D + +A G +HT+++ DG +W+WG G LG G T + P V
Sbjct: 343 ADVIAIAGGYSHTIVLRSDG-TVWTWGHNEGGQLGDGSTTNRSTPVQV 389
Score = 91.7 bits (226), Expect = 6e-16, Method: Composition-based stats.
Identities = 78/293 (26%), Positives = 126/293 (43%), Gaps = 51/293 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ G ++A+ + G +W WG+ + G S + P V V+
Sbjct: 242 LTDVIAIAGGYAHTIALKSDGTVWAWGD---NEGGRLGDGSTTNRSIPVKVGGLS--DVI 296
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G+ H +AL S G ++WG N GQLG G +R P +
Sbjct: 297 AIAGGNAHTIALKSDG--------TVWAWGDNEGGQLGDGSTTNRSTPVKVSGLAD---- 344
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G HT +L + WT+G E GQLG G+T + P QV L
Sbjct: 345 -VIAIAGGYSHTIVLRS--------DGTVWTWGHNEGGQLGDGSTTNRSTPVQVSGLAD- 394
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGN 236
++++ G++HT V S G +W+WG + G G N+S +P+ ++G
Sbjct: 395 --VIAIAGGVYHTIAVKSDGTMWAWGYNWYGQLGDGTTINSS----------TPVQVNG- 441
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA 289
D + +A G HT+ + DG +W+WG G LG G + PA
Sbjct: 442 ------LTDVIAIAGGYYHTIAMKSDG-AVWTWGFNYYGQLGDGSITNRSTPA 487
Score = 90.1 bits (222), Expect = 2e-15, Method: Composition-based stats.
Identities = 82/297 (27%), Positives = 123/297 (41%), Gaps = 45/297 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT-V 59
++ I ++ G + ++A+ + G +W WG G S + TP V G T V
Sbjct: 1138 LTNIIAIAGGYVHTIALKSDGTVWAWG---YNGYGQLGDGSTTNRSTPVQV---SGLTDV 1191
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ +A H VAL S G ++WG N GQLG G +R P +
Sbjct: 1192 IAIAGEYVHTVALKSDG--------TVWAWGYNGYGQLGDGSTTNRSTPVQVSGLTD--- 1240
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V + G HT L + WT+G +GQLG GTT + L P QV L
Sbjct: 1241 --VIAIAGGYVHTIALKS--------DGTVWTWGWNNSGQLGDGTTINRLTPVQVSGLTD 1290
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ + D +HT + S VW+WG L ++ R ++P+ +SG
Sbjct: 1291 AIAIAGGD---YHTIALKSDNTVWAWGSNSYGQLGDGTTINR------LTPVQVSG---- 1337
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPL 296
D + +A G HT+ + D +W+WG G LG T + PA L P+
Sbjct: 1338 ---LTDAIAIAGGDYHTIALKSDN-TVWAWGSNSYGQLGDVSTANSLTPAQCLLSPI 1390
Score = 89.4 bits (220), Expect = 3e-15, Method: Composition-based stats.
Identities = 76/292 (26%), Positives = 122/292 (41%), Gaps = 43/292 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ ++ G ++A+ + G +W WG +S G + ++ TP V V+
Sbjct: 640 LTDAIAIAGGVYHTIALKSDGTVWTWG---WNNSGQLGDGTTINRSTPVQVIGLT--DVI 694
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +AL S G ++WG N GQLG G +R P ++
Sbjct: 695 AIAGGDYHTIALKSDG--------TVWTWGFNYYGQLGGGATTNRSTPVQVKGLAD---- 742
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ + G H+ L + W +G GQLG G+T L P QV L
Sbjct: 743 -IIAIAGGYVHSIALKS--------DGTVWAWGYNGYGQLGDGSTTDHLTPVQVSGLTD- 792
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++++ G HT + S G VW+WG +G L ++ +P+ +SG
Sbjct: 793 --IIAIAGGYIHTIALKSDGTVWAWGHNEG------GQLGDGTTTNSSTPVQVSG----- 839
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
D + V HT+ + DG +W+WGR G LG G T + P V+
Sbjct: 840 --LTDVIAVTARLYHTIALKSDG-TVWTWGRNIYGQLGDGSTTERSLPVQVI 888
Score = 89.4 bits (220), Expect = 4e-15, Method: Composition-based stats.
Identities = 73/291 (25%), Positives = 121/291 (41%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ G ++A+ + +W WG+ G ++ + P+PV + ++
Sbjct: 1088 LTDVIAIAGGDYHTIALKSDNTVWAWGS---NSYGQLGDGTITNRSIPTPV--TYLTNII 1142
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +AL S G ++WG N GQLG G +R P +
Sbjct: 1143 AIAGGYVHTIALKSDG--------TVWAWGYNGYGQLGDGSTTNRSTPVQVSGLTD---- 1190
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + HT L + W +G GQLG G+T + P QV L
Sbjct: 1191 -VIAIAGEYVHTVALKS--------DGTVWAWGYNGYGQLGDGSTTNRSTPVQVSGLTD- 1240
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++++ G HT + S G VW+WG L ++ R ++P+ +SG
Sbjct: 1241 --VIAIAGGYVHTIALKSDGTVWTWGWNNSGQLGDGTTINR------LTPVQVSG----- 1287
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D + +A G HT+ + D +W+WG G LG G TI+ P V
Sbjct: 1288 --LTDAIAIAGGDYHTIALKSDN-TVWAWGSNSYGQLGDGTTINRLTPVQV 1335
Score = 87.4 bits (215), Expect = 1e-14, Method: Composition-based stats.
Identities = 83/289 (28%), Positives = 122/289 (42%), Gaps = 51/289 (17%)
Query: 7 VKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT-VVKV 62
+ AG +L + G +W G N L D +T ++ TP V G T V+ +
Sbjct: 1044 ISAGAYHTLTLKPDGTVWACGANWNGQLGDGTT------INRSTPVQV---SGLTDVIAI 1094
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H +AL S D ++WG+N+ GQLG G +R P + +
Sbjct: 1095 AGGDYHTIALKS--------DNTVWAWGSNSYGQLGDGTITNRSIPTPVTYLTN-----I 1141
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ G HT L + W +G GQLG G+T + P QV L
Sbjct: 1142 IAIAGGYVHTIALKS--------DGTVWAWGYNGYGQLGDGSTTNRSTPVQVSGLTD--- 1190
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
++++ HT + S G VW+WG G G + S T +P+ +SG
Sbjct: 1191 VIAIAGEYVHTVALKSDGTVWAWGY-NGYGQLGDGSTTNRS-----TPVQVSG------- 1237
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D + +A G HT+ + DG +W+WG SG LG G TI+ P V
Sbjct: 1238 LTDVIAIAGGYVHTIALKSDG-TVWTWGWNNSGQLGDGTTINRLTPVQV 1285
Score = 83.2 bits (204), Expect = 2e-13, Method: Composition-based stats.
Identities = 65/231 (28%), Positives = 99/231 (42%), Gaps = 38/231 (16%)
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+++ G+ H + L G + +WGAN NGQLG +R P +
Sbjct: 147 QISAGAYHTLTLKPDGAVW--------TWGANWNGQLGDESTTNRSTPVQVSGLTD---- 194
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G++HT L + W +G E GQLG G+T P QV L
Sbjct: 195 -VIAIAGGAYHTIALKS--------DGTVWAWGNNEGGQLGDGSTTDRSTPVQVSGLTD- 244
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++++ G HT + S G VW+WG +G L ++ R+ P+ + G
Sbjct: 245 --VIAIAGGYAHTIALKSDGTVWAWGDNEGGRLGDGSTTNRS------IPVKVGG----- 291
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D + +A G AHT+ + DG +W+WG G LG G T + P V
Sbjct: 292 --LSDVIAIAGGNAHTIALKSDG-TVWAWGDNEGGQLGDGSTTNRSTPVKV 339
Score = 83.2 bits (204), Expect = 2e-13, Method: Composition-based stats.
Identities = 74/288 (25%), Positives = 118/288 (40%), Gaps = 43/288 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ G ++A+ + G +W WG GG + + TP V ++
Sbjct: 690 LTDVIAIAGGDYHTIALKSDGTVWTWG---FNYYGQLGGGATTNRSTPVQVKGLA--DII 744
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +AL S G ++WG N GQLG G L P +
Sbjct: 745 AIAGGYVHSIALKSDG--------TVWAWGYNGYGQLGDGSTTDHLTPVQVSGLTD---- 792
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ + G HT L + W +G E GQLG GTT ++ P QV L
Sbjct: 793 -IIAIAGGYIHTIALKS--------DGTVWAWGHNEGGQLGDGTTTNSSTPVQVSGLTD- 842
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+++V L+HT + S G VW+WG L ++ R+ P+ + G
Sbjct: 843 --VIAVTARLYHTIALKSDGTVWTWGRNIYGQLGDGSTTERS------LPVQVIG----- 889
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
D + +A G HT+ + DG +W+WG + LG T + P
Sbjct: 890 --LTDVIAIAGGYYHTIALKSDG-AVWAWGYNGNNQLGNWSTKNSSTP 934
Score = 75.1 bits (183), Expect = 7e-11, Method: Composition-based stats.
Identities = 62/231 (26%), Positives = 96/231 (41%), Gaps = 38/231 (16%)
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+++ G+ H + L G +++GAN N QLG G P +
Sbjct: 595 QISAGAYHTLTLKPDG--------TVWAYGANWNSQLGDGSTTDSSTPVQVSGLTD---- 642
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ G +HT L + WT+G +GQLG GTT + P QV L
Sbjct: 643 -AIAIAGGVYHTIALKS--------DGTVWTWGWNNSGQLGDGTTINRSTPVQVIGLTD- 692
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++++ G +HT + S G VW+WG L A+ R+ +P+ + G
Sbjct: 693 --VIAIAGGDYHTIALKSDGTVWTWGFNYYGQLGGGATTNRS------TPVQVKG----- 739
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D + +A G H++ + DG +W+WG G LG G T D P V
Sbjct: 740 --LADIIAIAGGYVHSIALKSDG-TVWAWGYNGYGQLGDGSTTDHLTPVQV 787
Score = 65.9 bits (159), Expect = 3e-08, Method: Composition-based stats.
Identities = 79/332 (23%), Positives = 126/332 (37%), Gaps = 75/332 (22%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + ++ G ++A+ + G +W WG L D +T ++S TP V +G
Sbjct: 392 LADVIAIAGGVYHTIAVKSDGTMWAWGYNWYGQLGDGTT------INSSTPVQV---NGL 442
Query: 58 T-VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
T V+ +A G H +A+ S G + +WG N GQLG G +R P
Sbjct: 443 TDVIAIAGGYYHTIAMKSDGAVW--------TWGFNYYGQLGDGSITNRSTPAQRSLSGM 494
Query: 117 DS----PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGE-------------NGQ 159
S TC S +ALL N + + + +G G
Sbjct: 495 KSVATPTVTTGSATCVSLSSALLNGWVNGNGVATTAWFDYGTSTGMYFDATKTISCGTGS 554
Query: 160 LGHGTTQSALVP-------------------EQVKELPQYVYLVSVDCGLFHTSVVSSAG 200
G T L P + +P+ + G +HT + G
Sbjct: 555 TYVGATLGDLTPWTTYYCRIASQNIGGIYYGSETTFMPR----TQISAGAYHTLTLKPDG 610
Query: 201 DVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT 260
VW++G N+ L D+ +P+ +SG D + +A G HT+ +
Sbjct: 611 TVWAYGANW------NSQLGDGSTTDSSTPVQVSG-------LTDAIAIAGGVYHTIALK 657
Query: 261 DDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
DG +W+WG SG LG G TI+ P V+
Sbjct: 658 SDG-TVWTWGWNNSGQLGDGTTINRSTPVQVI 688
Score = 63.5 bits (153), Expect = 2e-07, Method: Composition-based stats.
Identities = 74/324 (22%), Positives = 124/324 (38%), Gaps = 61/324 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTP--SPVWDFHGHT 58
++ + ++ G ++A+ + GA+W WG ++ G +S +S TP S +D + T
Sbjct: 890 LTDVIAIAGGYYHTIALKSDGAVWAWG---YNGNNQLGNWSTKNSSTPVRSLRYDMNSVT 946
Query: 59 VVKVACGSEHVVALVSA--GETYKGEDLVCYSWGANNNGQLGLGDRESRL-----RPKII 111
V GS V+L S G +W D + + I
Sbjct: 947 TPAVITGSTTCVSLSSVLLNGWVDGNRAATTAWFDYGTSSGVYFDTTATIPCGTSSAYIS 1006
Query: 112 ETFNQDSPWAVY------------------------EVTCGSFHTALLTHRKRPNDMLES 147
T +PW Y +++ G++HT L +P+ +
Sbjct: 1007 ATLGSLTPWTTYYYRIAAQNSRGISYGSETIFLPRSQISAGAYHTLTL----KPDGTV-- 1060
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM 207
W G NGQLG GTT + P QV L ++++ G +HT + S VW+WG
Sbjct: 1061 --WACGANWNGQLGDGTTINRSTPVQVSGLTD---VIAIAGGDYHTIALKSDNTVWAWG- 1114
Query: 208 EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLW 267
G + ++T ++ + + +A G HT+ + DG +W
Sbjct: 1115 SNSYGQLGDGTITNRSIPTPVT------------YLTNIIAIAGGYVHTIALKSDG-TVW 1161
Query: 268 SWGRGRSGVLGTGKTIDFFAPAIV 291
+WG G LG G T + P V
Sbjct: 1162 AWGYNGYGQLGDGSTTNRSTPVQV 1185
Score = 46.2 bits (108), Expect = 0.034, Method: Composition-based stats.
Identities = 71/328 (21%), Positives = 118/328 (35%), Gaps = 65/328 (19%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + +V A ++A+ + G +W WG L D ST + PV
Sbjct: 840 LTDVIAVTARLYHTIALKSDGTVWTWGRNIYGQLGDGST--------TERSLPVQVIGLT 891
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+ +A G H +AL S G + +WG N N QLG ++ P ++ +
Sbjct: 892 DVIAIAGGYYHTIALKSDGAVW--------AWGYNGNNQLGNWSTKNSSTPVRSLRYDMN 943
Query: 118 S---PWAVY-EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT-----QSA 168
S P + TC S + LL N + + +G T SA
Sbjct: 944 SVTTPAVITGSTTCVSLSSVLLNGWVDGNRAATTAWFDYGTSSGVYFDTTATIPCGTSSA 1003
Query: 169 LVPEQVKELP---QYVYLVS--------------------VDCGLFHTSVVSSAGDVWSW 205
+ + L Y Y ++ + G +HT + G VW+
Sbjct: 1004 YISATLGSLTPWTTYYYRIAAQNSRGISYGSETIFLPRSQISAGAYHTLTLKPDGTVWAC 1063
Query: 206 GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
G L ++ R+ +P+ +SG D + +A G HT+ + D
Sbjct: 1064 GANWNGQLGDGTTINRS------TPVQVSG-------LTDVIAIAGGDYHTIALKSDN-T 1109
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
+W+WG G LG G + P V +
Sbjct: 1110 VWAWGSNSYGQLGDGTITNRSIPTPVTY 1137
Score = 44.3 bits (103), Expect = 0.11, Method: Composition-based stats.
Identities = 68/323 (21%), Positives = 116/323 (35%), Gaps = 59/323 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ G ++ + + G +W WG+ + G S + TP V V+
Sbjct: 342 LADVIAIAGGYSHTIVLRSDGTVWTWGH---NEGGQLGDGSTTNRSTPVQVSGLA--DVI 396
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +A+ S G ++WG N GQLG G + P +
Sbjct: 397 AIAGGVYHTIAVKSDG--------TMWAWGYNWYGQLGDGTTINSSTPVQVNGLTD---- 444
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ-----VK 175
V + G +HT + + WT+G GQLG G+ + P Q +K
Sbjct: 445 -VIAIAGGYYHTIAMKS--------DGAVWTWGFNYYGQLGDGSITNRSTPAQRSLSGMK 495
Query: 176 ELPQ------YVYLVSVDCGLFHTSVVSSAGDVWSW---GMEKGLGLCPNASLTRNEAGD 226
+ VS+ L + V + +W G G+ +++
Sbjct: 496 SVATPTVTTGSATCVSLSSALLNGWVNGNGVATTAWFDYGTSTGMYFDATKTISCGTGST 555
Query: 227 AISPIL------------ISGNGPHG------PKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+ G F Q++ GA HT+ + DG +W+
Sbjct: 556 YVGATLGDLTPWTTYYCRIASQNIGGIYYGSETTFMPRTQISAGAYHTLTLKPDG-TVWA 614
Query: 269 WGRGRSGVLGTGKTIDFFAPAIV 291
+G + LG G T D P V
Sbjct: 615 YGANWNSQLGDGSTTDSSTPVQV 637
>gi|47214126|emb|CAG01384.1| unnamed protein product [Tetraodon nigroviridis]
Length = 4628
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 2822 AVHSGGRHAMALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKAKRIRDIACG 2878
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE YSWG G+LG GD ++LRPK+++ V +V
Sbjct: 2879 SSHSAAITSSGE--------LYSWGLGEYGRLGHGDNTTQLRPKLVKVLLGHR---VIQV 2927
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 2928 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 2980
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + P ++ G G K
Sbjct: 2981 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRK------PQMV--EGLRGKKI-- 3030
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3031 -VHVAVGALHCLAVTDTG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3074
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 116/244 (47%), Gaps = 38/244 (15%)
Query: 44 SSFTPSPVWDFHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD 101
++ P + +VK+A +H +AL S GE + SWG + G+LG GD
Sbjct: 443 TTLAPMLIHSLSSRKMVKLAAHPDGQHYLALSSNGEVF--------SWGCGDGGRLGHGD 494
Query: 102 RESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQL 160
P +I FN + + V + CGS ++A +T ++ +T+G G G+L
Sbjct: 495 TTYLEEPTMIAAFNGKQAGKHVVHIACGSTYSAAIT--------VDGELYTWGRGNYGRL 546
Query: 161 GHGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNAS 218
GHG+++ P V L + + +V V CG T V+ G VWSWG + G
Sbjct: 547 GHGSSEDQTTPMLVTAL-KGLKVVDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----K 599
Query: 219 LTRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGV 276
L R + +P L+ K Q D V+V CG+ +V +T DG ++++WG+G +
Sbjct: 600 LGRGGSDGCKTPKLVE-------KLQDLDIVKVCCGSQFSVALTKDG-QVYTWGKGDNQR 651
Query: 277 LGTG 280
LG G
Sbjct: 652 LGHG 655
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 112/255 (43%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S AI ++G L+ WG L + G + P V GH V++V
Sbjct: 2871 RIRDIACGSSHSAAITSSGELYSWG---LGEYGRLGHGDNTTQLRPKLVKVLLGHRVIQV 2927
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 2928 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 2978
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHGT P+ V+ L +
Sbjct: 2979 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGTDVHVRKPQMVEGL-RGKK 3029
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ G V++WG + G N + T N P L+ G +
Sbjct: 3030 IVHVAVGALHCLAVTDTGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3078
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3079 GQKITRVACGSSHSV 3093
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 129/308 (41%), Gaps = 60/308 (19%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV +A G
Sbjct: 3848 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGVEVVDIAAG 3904
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + ++GE ++WG G+LG GD E +L+PK+++ V +V
Sbjct: 3905 GAHSACITASGE--------LFTWGKGRYGRLGHGDSEDQLKPKLVDALQGHR---VIDV 3953
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + M W++G G+ G+LG G + P ++ L + +
Sbjct: 3954 ACGSGDAQTLCLTD--------DDMVWSWGDGDYGKLGRGGSDGCKTPMKIDSLTG-LGV 4004
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
+ V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4005 IKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4052
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGY----------------KLWSWGRGRSGVLGTGKTI 283
G K + +A G+ H V T+DG ++++WG G LG G T
Sbjct: 4053 GKKV---IAIATGSLHCVCCTEDGRIKVFQWGLPRWSLGLGEVYTWGDNDEGQLGDGTTN 4109
Query: 284 DFFAPAIV 291
P +V
Sbjct: 4110 AIQRPRLV 4117
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 91/211 (43%), Gaps = 25/211 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+ + G S AI G L+ WG + G S TP V G VV V
Sbjct: 515 HVVHIACGSTYSAAITVDGELYTWGR---GNYGRLGHGSSEDQTTPMLVTALKGLKVVDV 571
Query: 63 ACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
ACGS +A+ G+ + SWG + G+LG G + PK++E QD
Sbjct: 572 ACGSGDAQTLAVTENGQVW--------SWGDGDYGKLGRGGSDGCKTPKLVEKL-QD--L 620
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ +V CGS + LT + +T+G G+N +LGHGT + P+ + L Q
Sbjct: 621 DIVKVCCGSQFSVALTK--------DGQVYTWGKGDNQRLGHGTDEHVRFPKLLDTL-QG 671
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
+V V G H ++ G+V SWG L
Sbjct: 672 KKVVDVAVGSTHCLALTDDGEVHSWGSNDKL 702
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 113/266 (42%), Gaps = 37/266 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + AGG S I +G L+ WG G P V GH V+ V
Sbjct: 3897 EVVDIAAGGAHSACITASGELFTWGKGRY---GRLGHGDSEDQLKPKLVDALQGHRVIDV 3953
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L +D + +SWG + G+LG G + P I++ + V
Sbjct: 3954 ACGSGDAQTLCLT------DDDMVWSWGDGDYGKLGRGGSDGCKTPMKIDSL---TGLGV 4004
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4005 IKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-QGKK 4055
Query: 183 LVSVDCGLFHTSVVSSAG--DVWSWGMEK-GLGLCPNASLTRNEAG-------DAIS-PI 231
++++ G H + G V+ WG+ + LGL + N+ G +AI P
Sbjct: 4056 VIAIATGSLHCVCCTEDGRIKVFQWGLPRWSLGLGEVYTWGDNDEGQLGDGTTNAIQRPR 4115
Query: 232 LISGNGPHGPKFQDPVQVACGAAHTV 257
L++ G K +VACG+AHT+
Sbjct: 4116 LVA--ALQGKKIN---RVACGSAHTL 4136
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 123/265 (46%), Gaps = 44/265 (16%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
+++WG L D GG PS VV+VA GS+ + A+ G+ Y
Sbjct: 2732 VFVWG---LNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTVEGKIY--- 2785
Query: 83 DLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTC--GSFHTALLTHRK 139
+ G NG+LGLG + P+ I S + V +V G H LT
Sbjct: 2786 -----ACGEATNGRLGLGLSSGTIPIPRQITAL---SNYVVKKVAVHSGGRHAMALT--- 2834
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
++ +++G G++G+LGH + + P ++ L + + + CG H++ ++S+
Sbjct: 2835 -----VDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEAL-KAKRIRDIACGSSHSAAITSS 2888
Query: 200 GDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AH 255
G+++SWG+ E G LG N + R P L+ H +QVACG+ A
Sbjct: 2889 GELYSWGLGEYGRLGHGDNTTQLR--------PKLVKVLLGH-----RVIQVACGSRDAQ 2935
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTG 280
T+ +TD+G ++SWG G G LG G
Sbjct: 2936 TLALTDEGL-VFSWGDGDFGKLGRG 2959
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 118/269 (43%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3750 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPTEALATLRPVQLIGGEQTLFAVT 3806
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ V V G H
Sbjct: 3807 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIRKV-AVNSGGKHCL 3857
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + V +V + G H+
Sbjct: 3858 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGVEVVDIAAGGAHS 3908
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ ++++G++++WG + L ++ D + P L+ H + VACG+
Sbjct: 3909 ACITASGELFTWGKGR------YGRLGHGDSEDQLKPKLVDALQGH-----RVIDVACGS 3957
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 3958 GDAQTLCLTDDDM-VWSWGDGDYGKLGRG 3985
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 21/149 (14%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQV-----KELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+++G G+ G+LGHG T P + K+ ++V V + CG +++ ++ G++++
Sbjct: 480 FSWGCGDGGRLGHGDTTYLEEPTMIAAFNGKQAGKHV--VHIACGSTYSAAITVDGELYT 537
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDD 262
WG L + D +P+L++ K V VACG+ A T+ VT++
Sbjct: 538 WGRGN------YGRLGHGSSEDQTTPMLVTA-----LKGLKVVDVACGSGDAQTLAVTEN 586
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G ++WSWG G G LG G + P +V
Sbjct: 587 G-QVWSWGDGDYGKLGRGGSDGCKTPKLV 614
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 92/209 (44%), Gaps = 30/209 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P E P + G T +
Sbjct: 3760 YGWGHNHRGQLGGIEGAKVKVPTPTEALATLRPVQLI----GGEQTLFAV-------TAD 3808
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T+S P ++ + Q+V++ V+V+ G H +SS G+V+S
Sbjct: 3809 GKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIRKVAVNSGGKHCLALSSEGEVYS 3867
Query: 205 WG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG E G LG + R +++ + + V +A G AH+ +T
Sbjct: 3868 WGEAEDGKLGHGNRSPCDRPRVIESLRGVEV-------------VDIAAGGAHSACITAS 3914
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G +L++WG+GR G LG G + D P +V
Sbjct: 3915 G-ELFTWGKGRYGRLGHGDSEDQLKPKLV 3942
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG-NGPHGPKFQDPVQVA 250
H +SS G+V+SWG G L + P +I+ NG K V +A
Sbjct: 469 HYLALSSNGEVFSWGCGDG------GRLGHGDTTYLEEPTMIAAFNGKQAGKHV--VHIA 520
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
CG+ ++ +T DG +L++WGRG G LG G + D P +V
Sbjct: 521 CGSTYSAAITVDG-ELYTWGRGNYGRLGHGSSEDQTTPMLV 560
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G + LA+ + G ++ WG+ D +G + + P+ V G + +V
Sbjct: 3029 KIVHVAVGALHCLAVTDTGQVYAWGD---NDHGQQGNGTTTVNRKPTLVQGLEGQKITRV 3085
Query: 63 ACGSEHVVA 71
ACGS H VA
Sbjct: 3086 ACGSSHSVA 3094
>gi|391339113|ref|XP_003743897.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like
[Metaseiulus occidentalis]
Length = 4496
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 129/286 (45%), Gaps = 32/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ ++G ++ WG D G S P + VV VACG
Sbjct: 3710 AVNSGGKHCLALTSSGDVFSWGE---GDDGKLGHGSKALCERPKLIESLRDKHVVSVACG 3766
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + ++GE Y +WG G+LG GD E +L+PK +E + V +V
Sbjct: 3767 GAHSACITASGELY--------TWGKGRYGRLGHGDSEDQLKPKKVEELAGHN---VLDV 3815
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L + + + W++G G+ G+LG G + P+++ L Q ++
Sbjct: 3816 ACGSGDAQTLCVSR------DGLVWSWGDGDYGKLGRGGSDGCKFPQKIDSL-QNAGVIK 3868
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
V+CG + +++AG V++WG KG L P + G G +
Sbjct: 3869 VECGSQFSVALTAAGVVYTWG--KG----DYHRLGHGSEDHVRRPQAVQG-ALQGKRV-- 3919
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+QVA G+ H V TD G ++++WG G LG G T P +V
Sbjct: 3920 -IQVAVGSLHCVACTDSG-EVFTWGDNDEGQLGDGSTNAIQRPKLV 3963
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 135/290 (46%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + +S P V + VACG
Sbjct: 2743 AVHSGGRHALALTIDGRVFSWGE---GEDGKLGHGNKISYDRPKLVESLKCKRIRDVACG 2799
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE Y +WG+ G+LG GD +L+PK + + + V +V
Sbjct: 2800 SSHSAAVTSSGELY--------TWGSGEYGRLGHGDNVPQLKPKQVRALSHER---VVQV 2848
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L +R +++G G+ G+LG G + + +P+ V+ L ++
Sbjct: 2849 ACGSRDAQTLALTER------HWVYSWGDGDFGKLGKGGSDGSSLPQNVETLNSQ-QVIQ 2901
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + +S G VW+WG KG LG ++ + + + ++
Sbjct: 2902 VECGAQFSLALSKNGKVWTWG--KGDYFRLGHGSDSHVRWPQVVEELAD----------- 2948
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ +QV+ GA H + VTD G ++++WG G G G T PAIV
Sbjct: 2949 --KNVIQVSVGALHCIAVTDRG-EVYAWGDNDHGQQGNGNTTVNRKPAIV 2995
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 122/262 (46%), Gaps = 52/262 (19%)
Query: 48 PSPVWDFHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P P+ D + + KVA G H +AL G + SWG +G+LG G++ S
Sbjct: 2728 PKPLTDLSPYFIKKVAVHSGGRHALALTIDGRVF--------SWGEGEDGKLGHGNKISY 2779
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
RPK++E+ + +V CGS H+A +T +T+G GE G+LGHG
Sbjct: 2780 DRPKLVESLKCKR---IRDVACGSSHSAAVTSSGE--------LYTWGSGEYGRLGHGDN 2828
Query: 166 QSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASL 219
L P+QV+ L + +V V CG T ++ V+SWG + G G +SL
Sbjct: 2829 VPQLKPKQVRAL-SHERVVQVACGSRDAQTLALTERHWVYSWGDGDFGKLGKGGSDGSSL 2887
Query: 220 TRN-EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
+N E ++ Q +QV CGA ++ ++ +G K+W+WG+G LG
Sbjct: 2888 PQNVETLNS----------------QQVIQVECGAQFSLALSKNG-KVWTWGKGDYFRLG 2930
Query: 279 TGKTIDFFAPAIVLWPPLTEEF 300
G + + V WP + EE
Sbjct: 2931 HG------SDSHVRWPQVVEEL 2946
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 110/256 (42%), Gaps = 36/256 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G S A+ ++G L+ WG+ + G V P V VV+V
Sbjct: 2792 RIRDVACGSSHSAAVTSSGELYTWGS---GEYGRLGHGDNVPQLKPKQVRALSHERVVQV 2848
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L + YSWG + G+LG G + P+ +ET N V
Sbjct: 2849 ACGSRDAQTLALTERHW------VYSWGDGDFGKLGKGGSDGSSLPQNVETLNSQQ---V 2899
Query: 123 YEVTCGS-FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+V CG+ F AL + K WT+G G+ +LGHG+ P+ V+EL
Sbjct: 2900 IQVECGAQFSLALSKNGK---------VWTWGKGDYFRLGHGSDSHVRWPQVVEELADK- 2949
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++ V G H V+ G+V++WG + G N + T N P ++ G
Sbjct: 2950 NVIQVSVGALHCIAVTDRGEVYAWG-DNDHGQQGNGNTTVNR-----KPAIVRG------ 2997
Query: 242 KFQDPVQVACGAAHTV 257
+ VACG++H+V
Sbjct: 2998 -LEAITNVACGSSHSV 3012
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 109/257 (42%), Gaps = 35/257 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+ SV GG S I +G L+ WG G P V + GH V+ V
Sbjct: 3759 HVVSVACGGAHSACITASGELYTWGK---GRYGRLGHGDSEDQLKPKKVEELAGHNVLDV 3815
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L + D + +SWG + G+LG G + P+ I++ V
Sbjct: 3816 ACGSGDAQTLCVS------RDGLVWSWGDGDYGKLGRGGSDGCKFPQKIDSLQNA---GV 3866
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CGS + LT + +T+G G+ +LGHG+ P+ V+ Q
Sbjct: 3867 IKVECGSQFSVALT--------AAGVVYTWGKGDYHRLGHGSEDHVRRPQAVQGALQGKR 3918
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++ V G H + +G+V++WG E LG ++ R P L++ G
Sbjct: 3919 VIQVAVGSLHCVACTDSGEVFTWGDNDEGQLGDGSTNAIQR--------PKLVA--SLKG 3968
Query: 241 PKFQDPVQVACGAAHTV 257
K +VACG+AHTV
Sbjct: 3969 KKMN---RVACGSAHTV 3982
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 32/223 (14%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V++ G + + AL S G+ Y + G G+LG+G ES P +IET Q
Sbjct: 3655 VQIVGGEQTLFALTSDGKVY--------ATGYGAGGRLGIGGTESVSTPTLIETL-QHVI 3705
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V G H LT +++G G++G+LGHG+ P+ ++ L +
Sbjct: 3706 VTQVAVNSGGKHCLALTS--------SGDVFSWGEGDDGKLGHGSKALCERPKLIESL-R 3756
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
++VSV CG H++ ++++G++++WG + L ++ D + P + H
Sbjct: 3757 DKHVVSVACGGAHSACITASGELYTWGKGR------YGRLGHGDSEDQLKPKKVEELAGH 3810
Query: 240 GPKFQDPVQVACGA--AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ + VACG+ A T+ V+ DG +WSWG G G LG G
Sbjct: 3811 -----NVLDVACGSGDAQTLCVSRDGL-VWSWGDGDYGKLGRG 3847
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 96/221 (43%), Gaps = 50/221 (22%)
Query: 85 VCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDM 144
V + WG N+ GQLG G ++++ I C + TAL RP +
Sbjct: 3620 VIHGWGHNHRGQLG-GVEGAKVKTATI---------------CDAL-TAL-----RPVQI 3657
Query: 145 LESMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL-VSVDCGLFH 192
+ F L +G++ G G T+S P ++ L + V+V+ G H
Sbjct: 3658 VGGEQTLFALTSDGKVYATGYGAGGRLGIGGTESVSTPTLIETLQHVIVTQVAVNSGGKH 3717
Query: 193 TSVVSSAGDVWSWGM--EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
++S+GDV+SWG + LG A R P LI + + V VA
Sbjct: 3718 CLALTSSGDVFSWGEGDDGKLGHGSKALCER--------PKLI-----ESLRDKHVVSVA 3764
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
CG AH+ +T G +L++WG+GR G LG G + D P V
Sbjct: 3765 CGGAHSACITASG-ELYTWGKGRYGRLGHGDSEDQLKPKKV 3804
>gi|348687440|gb|EGZ27254.1| hypothetical protein PHYSODRAFT_358246 [Phytophthora sojae]
Length = 545
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 130/290 (44%), Gaps = 36/290 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G ++ + + G ++ WG D G F P V + G + +V
Sbjct: 35 RIVQIACGSGHTVVLTDEGEVYTWGR---GDDGRLGHGDNGWKFVPRLVEELRGKNIRQV 91
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
CGS H A+ +G+ Y+WG G+LG G+ P ++ET V
Sbjct: 92 TCGSYHTAAVTVSGD--------LYTWGGGMYGKLGHGNETGHSTPFLVETLK---GMQV 140
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS-ALVPEQVKELPQYV 181
+V CGS HT +L K +T+G ENG GHG T+ +P V+EL
Sbjct: 141 RQVACGSRHTVVLLENKD--------VYTWGDKENGVSGHGDTEGHQYLPCPVEELRGKN 192
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ CG FHT+ +S G+V+++G K L N+ RN+ P+ G
Sbjct: 193 IVQISACG-FHTAALSEFGEVFTFGEGKFGRLGHNSE--RNQ------PVARFVEALAGK 243
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + QVACG HT VT+ G ++++WG G G LG G ++ P V
Sbjct: 244 RVK---QVACGGFHTAAVTETG-EVYTWGGGEHGQLGHGDKVNKTVPTRV 289
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 105/201 (52%), Gaps = 28/201 (13%)
Query: 84 LVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPND 143
+ YSWG +GQLGLGD + RP I+ + + ++ CGS HT +LT
Sbjct: 1 MTVYSWGRGEDGQLGLGDTSDQHRPVPIDALAERR---IVQIACGSGHTVVLTD------ 51
Query: 144 MLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVW 203
E +T+G G++G+LGHG VP V+EL + + V CG +HT+ V+ +GD++
Sbjct: 52 --EGEVYTWGRGDDGRLGHGDNGWKFVPRLVEEL-RGKNIRQVTCGSYHTAAVTVSGDLY 108
Query: 204 SW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+W GM LG NE G + +P L+ K QVACG+ HTV++ +
Sbjct: 109 TWGGGMYGKLG-------HGNETGHS-TPFLVE-----TLKGMQVRQVACGSRHTVVLLE 155
Query: 262 DGYKLWSWGRGRSGVLGTGKT 282
+ +++WG +GV G G T
Sbjct: 156 N-KDVYTWGDKENGVSGHGDT 175
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 130/294 (44%), Gaps = 44/294 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPD--SSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G + A+ +G L+ WG E G S TP V G V
Sbjct: 87 NIRQVTCGSYHTAAVTVSGDLYTWGGGMYGKLGHGNETGHS-----TPFLVETLKGMQVR 141
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES-RLRPKIIETFNQDSP 119
+VACGS H V L+ E+ Y+WG NG G GD E + P +E +
Sbjct: 142 QVACGSRHTVVLL--------ENKDVYTWGDKENGVSGHGDTEGHQYLPCPVEELRGKN- 192
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ +++ FHTA L+ +TFG G+ G+LGH + ++ V V+ L
Sbjct: 193 --IVQISACGFHTAALSEFGE--------VFTFGEGKFGRLGHNSERNQPVARFVEALAG 242
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNG 237
+ V CG FHT+ V+ G+V++WG E G LG + T +++ L+
Sbjct: 243 K-RVKQVACGGFHTAAVTETGEVYTWGGGEHGQLGHGDKVNKTVPTRVESLVEKLV---- 297
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
VQ+ CG +HTV +TD G ++++WG G G LG T P +V
Sbjct: 298 ---------VQITCGWSHTVALTDTG-EVYTWGNGDHGKLGHNDTTKVTLPKLV 341
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 80/181 (44%), Gaps = 34/181 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV--SSFTPSPVWDF----HG 56
I + A G + A+ G ++ +G EG F + +S PV F G
Sbjct: 192 NIVQISACGFHTAALSEFGEVFTFG---------EGKFGRLGHNSERNQPVARFVEALAG 242
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
V +VACG H A+ GE Y +WG +GQLG GD+ ++ P +E+ +
Sbjct: 243 KRVKQVACGGFHTAAVTETGEVY--------TWGGGEHGQLGHGDKVNKTVPTRVESLVE 294
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V ++TCG HT LT D E W G G++G+LGH T +P+ V
Sbjct: 295 K---LVVQITCGWSHTVALT------DTGEVYTW--GNGDHGKLGHNDTTKVTLPKLVDV 343
Query: 177 L 177
L
Sbjct: 344 L 344
>gi|440790434|gb|ELR11717.1| regulator of chromosome condensation (RCC1) repeat domain containing
protein [Acanthamoeba castellanii str. Neff]
Length = 1563
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 126/284 (44%), Gaps = 47/284 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTE---GGFSLVSSFTPSPVWDFHGH 57
M Q+ +V G A+ G ++ WG + S E G S V P V F
Sbjct: 874 MRQVVNVSCGWNHCAALTENGHVYTWGR----NGSGELGHGDKSGVPQLHPKQVIFFKSK 929
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V +V CG EH +A +G Y WG GQLGLGDR P I+T +
Sbjct: 930 CVKEVVCGGEHTLARTESGSVY--------GWGNGRIGQLGLGDRTLHWLPVPIKTLRK- 980
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V ++ G HT ++ + FG GE GQLG G + LVP +++ +
Sbjct: 981 --MHVTQLAAGYAHTIVV--------LKSGEVMVFGGGEVGQLGTGMRKDLLVPTKLQAM 1030
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISG 235
P +V CG HT++++ AG+V++ G M LG N D ++P ++ G
Sbjct: 1031 PS---IVQAACGYCHTALLTEAGEVYTCGSAMSGQLGHADNLQ------NDRLAPKMVEG 1081
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
+F +ACG+ HT+ +TD +++WG GV GT
Sbjct: 1082 LNGKRIRF-----IACGSFHTIAITDLD-NVYTWG----GVQGT 1115
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 103/239 (43%), Gaps = 32/239 (13%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD--RESRLRPKIIETFN 115
++V+ ACG H L AGE Y + G+ +GQLG D + RL PK++E N
Sbjct: 1032 SIVQAACGYCHTALLTEAGEVY--------TCGSAMSGQLGHADNLQNDRLAPKMVEGLN 1083
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCW--TFGLGENGQLGHGTTQSAL---V 170
+ + CGSFHT +T D+ W G +G + + L
Sbjct: 1084 GKR---IRFIACGSFHTIAIT------DLDNVYTWGGVQGTDSDGAMRQERKAAILKRVT 1134
Query: 171 PEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLG--LCPNASLTRNEAGDA 227
P VK L + + LVS CG H+ + G+V+ W L L S +G
Sbjct: 1135 PSIVKGLMGKRISLVS--CGHAHSVATTMDGEVYVWSSTGSLQPPLLLRGSGLSTASGTT 1192
Query: 228 ISPILISGNGPHGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
+P+L+S PV A G T++VT++G L+SWG G G LG G D
Sbjct: 1193 EAPLLVSAIPDGQDAKSKPVVKHAAAGEEFTLVVTENGL-LYSWGSGAFGQLGLGDQGD 1250
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 63/159 (39%), Gaps = 33/159 (20%)
Query: 134 LLTHRKRPNDM-LESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFH 192
+L HR++ N+ L LG + G + + L +V+V CG H
Sbjct: 827 MLNHRRKRNEAHLPPKVEKRNLGPESEQDDGVSSGGKLNVPFGGLVSMRQVVNVSCGWNH 886
Query: 193 TSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ---- 248
+ ++ G V++WG RN +G+ L G+ P+ P Q
Sbjct: 887 CAALTENGHVYTWG--------------RNGSGE-----LGHGDKSGVPQLH-PKQVIFF 926
Query: 249 -------VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
V CG HT+ T+ G ++ WG GR G LG G
Sbjct: 927 KSKCVKEVVCGGEHTLARTESG-SVYGWGNGRIGQLGLG 964
>gi|432856462|ref|XP_004068433.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Oryzias latipes]
Length = 4777
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3013 AVHSGGRHAMALTVDGKVFSWGEG---DDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3069
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE YSWG G+LG GD ++LRPK+++ V +V
Sbjct: 3070 SSHSAAITSSGE--------LYSWGLGEYGRLGHGDNTTQLRPKLVKVLLGHR---VIQV 3118
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3119 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3171
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + P ++ G G K
Sbjct: 3172 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRK------PQIV--EGLRGKKI-- 3221
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3222 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3265
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 130/292 (44%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV +A G
Sbjct: 3986 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGVEVVDIAAG 4042
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + ++GE ++WG G+LG GD E +L+PK+++ V +V
Sbjct: 4043 GAHSACITASGE--------LFTWGKGRYGRLGHGDSEDQLKPKLVDALQGHR---VIDV 4091
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + M W++G G+ G+LG G + VP ++ L + +
Sbjct: 4092 ACGSGDAQTLCLTD--------DDMVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4142
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4143 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4190
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4191 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4238
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 36/243 (14%)
Query: 44 SSFTPSPVWDFHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD 101
++ P + +VK+A +H +AL ++GE Y SWG + G+LG GD
Sbjct: 431 TTLAPMLIHGLSSRKIVKLAAHPDGQHFLALSTSGEVY--------SWGCGDGGRLGHGD 482
Query: 102 RESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQL 160
P +I TF+ + + V ++ CGS ++A +T + +T+G G G+L
Sbjct: 483 ATYLEEPALITTFSGKQTGKQVVQIACGSTYSAAVT--------ADGELYTWGRGNYGRL 534
Query: 161 GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
GHG+++ P V L Q V V+ G T V+ G VWSWG + G L
Sbjct: 535 GHGSSEDVTTPMLVTALKGQKVVDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 588
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P L+ K Q D V+V CG+ +V +T DG ++++WG+G + L
Sbjct: 589 GRGGSDGCKTPKLVE-------KLQDLDIVKVCCGSQFSVALTKDG-QVYTWGKGDNQRL 640
Query: 278 GTG 280
G G
Sbjct: 641 GHG 643
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S AI ++G L+ WG L + G + P V GH V++V
Sbjct: 3062 RIRDIACGSSHSAAITSSGELYSWG---LGEYGRLGHGDNTTQLRPKLVKVLLGHRVIQV 3118
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3119 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3169
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHGT P+ V+ L +
Sbjct: 3170 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGTDVHVRKPQIVEGL-RGKK 3220
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3221 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3269
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3270 GQKITRVACGSSHSV 3284
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 92/211 (43%), Gaps = 25/211 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
Q+ + G S A+ G L+ WG + G S TP V G VV V
Sbjct: 503 QVVQIACGSTYSAAVTADGELYTWGRG---NYGRLGHGSSEDVTTPMLVTALKGQKVVDV 559
Query: 63 ACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
ACGS +A+ G+ + SWG + G+LG G + PK++E QD
Sbjct: 560 ACGSGDAQTLAVTENGQVW--------SWGDGDYGKLGRGGSDGCKTPKLVEKL-QD--L 608
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ +V CGS + LT + +T+G G+N +LGHGT + P+ + L Q
Sbjct: 609 DIVKVCCGSQFSVALTK--------DGQVYTWGKGDNQRLGHGTDEHVRYPKLLDSL-QG 659
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
+V + G H ++ G+V SWG L
Sbjct: 660 KKVVDIAVGSTHCLALTDEGEVHSWGSNDKL 690
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 109/257 (42%), Gaps = 36/257 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + AGG S I +G L+ WG G P V GH V+ V
Sbjct: 4035 EVVDIAAGGAHSACITASGELFTWGKGRY---GRLGHGDSEDQLKPKLVDALQGHRVIDV 4091
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L +D + +SWG + G+LG G + P I++ + V
Sbjct: 4092 ACGSGDAQTLCLT------DDDMVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TGLGV 4142
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4143 VKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-QGKK 4193
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++++ G H + G+V++WG E LG ++ R P L++ G
Sbjct: 4194 VIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL--QG 4243
Query: 241 PKFQDPVQVACGAAHTV 257
K +VACG+AHT+
Sbjct: 4244 KKIN---RVACGSAHTL 4257
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 122/262 (46%), Gaps = 38/262 (14%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
+++WG L D GG PS VV+VA GS+ + A+ G+ Y
Sbjct: 2923 VFVWG---LNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTVEGKIY--- 2976
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPN 142
+ G NG+LGLG L I+ Q S + Y V + H+ R
Sbjct: 2977 -----ACGEATNGRLGLG-----LSSGTIQIPRQISALSNYVVKKVAVHSG---GRHAMA 3023
Query: 143 DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV 202
++ +++G G++G+LGH + + P ++ L + + + CG H++ ++S+G++
Sbjct: 3024 LTVDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEAL-KTKRIRDIACGSSHSAAITSSGEL 3082
Query: 203 WSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVL 258
+SWG+ E G LG N + R P L+ H +QVACG+ A T+
Sbjct: 3083 YSWGLGEYGRLGHGDNTTQLR--------PKLVKVLLGH-----RVIQVACGSRDAQTLA 3129
Query: 259 VTDDGYKLWSWGRGRSGVLGTG 280
+TD+G ++SWG G G LG G
Sbjct: 3130 LTDEGL-VFSWGDGDFGKLGRG 3150
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+C ++ G SLA+ +G +W WG D G + V P V G +V VA
Sbjct: 3169 VCQIECGAQFSLALTKSGVVWTWGKG---DYFRLGHGTDVHVRKPQIVEGLRGKKIVHVA 3225
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ +G+ Y+WG N++GQ G G +P +++ +
Sbjct: 3226 VGALHCLAVTDSGQV--------YAWGDNDHGQQGNGTTTVNRKPTLVQGLEGQK---IT 3274
Query: 124 EVTCGSFHTALLT 136
V CGS H+ T
Sbjct: 3275 RVACGSSHSVAWT 3287
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 118/269 (43%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3888 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPTEALATLRPVQLIGGEQTLFAVT 3944
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 3945 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 3995
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + V +V + G H+
Sbjct: 3996 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGVEVVDIAAGGAHS 4046
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ ++++G++++WG + L ++ D + P L+ H + VACG+
Sbjct: 4047 ACITASGELFTWGKGR------YGRLGHGDSEDQLKPKLVDALQGH-----RVIDVACGS 4095
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4096 GDAQTLCLTDDDM-VWSWGDGDYGKLGRG 4123
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 21/149 (14%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQV-----KELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+++G G+ G+LGHG P + K+ + V V + CG +++ V++ G++++
Sbjct: 468 YSWGCGDGGRLGHGDATYLEEPALITTFSGKQTGKQV--VQIACGSTYSAAVTADGELYT 525
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDD 262
WG L + D +P+L++ K Q V VACG+ A T+ VT++
Sbjct: 526 WGRGN------YGRLGHGSSEDVTTPMLVTAL-----KGQKVVDVACGSGDAQTLAVTEN 574
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G ++WSWG G G LG G + P +V
Sbjct: 575 G-QVWSWGDGDYGKLGRGGSDGCKTPKLV 602
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG-NGPHGPKFQDPVQVA 250
H +S++G+V+SWG G L +A P LI+ +G K VQ+A
Sbjct: 457 HFLALSTSGEVYSWGCGDG------GRLGHGDATYLEEPALITTFSGKQTGK--QVVQIA 508
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
CG+ ++ VT DG +L++WGRG G LG G + D P +V
Sbjct: 509 CGSTYSAAVTADG-ELYTWGRGNYGRLGHGSSEDVTTPMLV 548
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 92/209 (44%), Gaps = 30/209 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P E P + G T +
Sbjct: 3898 YGWGHNHRGQLGGIEGAKVKVPTPTEALATLRPVQLI----GGEQTLFAV-------TAD 3946
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T+S P ++ + Q+V++ V+V+ G H +SS G+V+S
Sbjct: 3947 GKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCLALSSEGEVYS 4005
Query: 205 WG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG E G LG + R +++ + + V +A G AH+ +T
Sbjct: 4006 WGEAEDGKLGHGNRSPCDRPRVIESLRGVEV-------------VDIAAGGAHSACITAS 4052
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G +L++WG+GR G LG G + D P +V
Sbjct: 4053 G-ELFTWGKGRYGRLGHGDSEDQLKPKLV 4080
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G + LA+ ++G ++ WG+ D +G + + P+ V G + +V
Sbjct: 3220 KIVHVAVGALHCLAVTDSGQVYAWGD---NDHGQQGNGTTTVNRKPTLVQGLEGQKITRV 3276
Query: 63 ACGSEHVVA 71
ACGS H VA
Sbjct: 3277 ACGSSHSVA 3285
>gi|67623229|ref|XP_667897.1| uvb-resistance protein uvr8 [Cryptosporidium hominis TU502]
gi|54659070|gb|EAL37667.1| uvb-resistance protein uvr8 [Cryptosporidium hominis]
Length = 487
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 132/294 (44%), Gaps = 41/294 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S I V G S AI N+G L +WG + GF + P + VV
Sbjct: 41 LSSISKVSCGSNYSAAITNSGDLILWGY----GGCGQLGFGNLEDCL-VPRVNLSLKNVV 95
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VAC H A++S GE Y+WG + NG+LG G E + ++ +
Sbjct: 96 QVACSDRHTAAILSNGE--------LYTWGCSKNGKLGHGQFELSISNNVVSQPMKVKAL 147
Query: 121 ---AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V +V+CGS+HT LT K+ T+GLG G+LGHG TQ P+ ++ L
Sbjct: 148 EGEKVIQVSCGSYHTGCLTDDKK--------ALTWGLGLQGRLGHGDTQDIFTPKLIESL 199
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ + + CG HT+++ G ++ +G L D + P L+ G
Sbjct: 200 AG-LPIKEISCGGHHTAILLVTGKLYMFGGG------AFGKLGFGSTDDVLIPRLLEG-- 250
Query: 238 PHGPKFQD--PVQVACGAAHTVLVTDDGYKLWSWGR-GRSGVLGTGKTIDFFAP 288
+D +V+ G+ H+ VT G K+++WG+ GR G + G DF +P
Sbjct: 251 ----PLEDIQITKVSLGSQHSAAVTKCG-KVYTWGQGGRLGHIFNGPEHDFLSP 299
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 122/274 (44%), Gaps = 35/274 (12%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT----PSPVWDFHG 56
+ + V + AI + G L+ WG C G F L S P V G
Sbjct: 91 LKNVVQVACSDRHTAAILSNGELYTWG-CSKNGKLGHGQFELSISNNVVSQPMKVKALEG 149
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
V++V+CGS H L +D +WG G+LG GD + PK+IE+
Sbjct: 150 EKVIQVSCGSYHTGCLT--------DDKKALTWGLGLQGRLGHGDTQDIFTPKLIESL-- 199
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ + E++CG HTA+L ++ + FG G G+LG G+T L+P ++
Sbjct: 200 -AGLPIKEISCGGHHTAIL--------LVTGKLYMFGGGAFGKLGFGSTDDVLIPRLLEG 250
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + + V G H++ V+ G V++WG LG N D +SP +S
Sbjct: 251 PLEDIQITKVSLGSQHSAAVTKCGKVYTWGQGGRLGHIFNGP-----EHDFLSPKRLS-- 303
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG 270
+ V ++CG +H+V ++D G +++WG
Sbjct: 304 ---NLEKAFIVDISCGNSHSVALSDVG-DIYTWG 333
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 40/246 (16%)
Query: 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
H ++ KV+CGS + A+ ++G DL+ WG GQLG G+ E L P++ +
Sbjct: 40 HLSSISKVSCGSNYSAAITNSG------DLIL--WGYGGCGQLGFGNLEDCLVPRVNLSL 91
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALV---- 170
V +V C HTA + + +T+G +NG+LGHG + ++
Sbjct: 92 KN-----VVQVACSDRHTAAI--------LSNGELYTWGCSKNGKLGHGQFELSISNNVV 138
Query: 171 --PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
P +VK L + ++ V CG +HT ++ +WG LGL L + D
Sbjct: 139 SQPMKVKAL-EGEKVIQVSCGSYHTGCLTDDKKALTWG----LGL--QGRLGHGDTQDIF 191
Query: 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+P LI K +++CG HT ++ G KL+ +G G G LG G T D P
Sbjct: 192 TPKLIESLAGLPIK-----EISCGGHHTAILLVTG-KLYMFGGGAFGKLGFGSTDDVLIP 245
Query: 289 AIVLWP 294
++ P
Sbjct: 246 RLLEGP 251
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 100/206 (48%), Gaps = 25/206 (12%)
Query: 89 WGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESM 148
WG++ GQ G E P +++ S ++ +V+CGS ++A +T+ D++
Sbjct: 13 WGSSEYGQHGSKGEEVSPGPHLVDGLRHLS--SISKVSCGSNYSAAITN---SGDLI--- 64
Query: 149 CWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+G G GQLG G + LVP L +V V C HT+ + S G++++WG
Sbjct: 65 --LWGYGGCGQLGFGNLEDCLVPRVNLSLKN---VVQVACSDRHTAAILSNGELYTWGCS 119
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF---QDPVQVACGAAHTVLVTDDGYK 265
K N L + +IS ++S P K + +QV+CG+ HT +TDD K
Sbjct: 120 K------NGKLGHGQFELSISNNVVSQ--PMKVKALEGEKVIQVSCGSYHTGCLTDD-KK 170
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIV 291
+WG G G LG G T D F P ++
Sbjct: 171 ALTWGLGLQGRLGHGDTQDIFTPKLI 196
>gi|295696487|ref|YP_003589725.1| S-layer protein [Kyrpidia tusciae DSM 2912]
gi|295412089|gb|ADG06581.1| S-layer domain protein [Kyrpidia tusciae DSM 2912]
Length = 1423
Score = 99.0 bits (245), Expect = 4e-18, Method: Composition-based stats.
Identities = 82/280 (29%), Positives = 129/280 (46%), Gaps = 42/280 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+V AGG SL + + +W WG N L D +T G TP+P +V +V
Sbjct: 74 AVSAGGSHSLVLTSDQTVWAWGDNTNGQLGDGTTTG------RQTPTPAQGL--PSVAQV 125
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL G ++WG N++GQLG G P ++ DS V
Sbjct: 126 SAGESHSLALTDDGRV--------FAWGLNSSGQLGDGTTADSRTPVQVQGLATDSTIKV 177
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
V G H+ LT R + +G +GQLG+ +T + +P QV+ LP V
Sbjct: 178 --VAAGGNHSLALTSDGR--------VFAWGKNSSGQLGNNSTVDSSIPVQVQGLPANV- 226
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V G H+ ++S G +++WG+ + L ++ +P+L++G P G K
Sbjct: 227 -TAVAAGGNHSLALTSDGRIYAWGLNS------SGQLGDGTTSNSSTPVLVAGL-PAGSK 278
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
PV V+ G H++ + DG +++WG G LG G T
Sbjct: 279 ---PVAVSAGKDHSLALMQDG-TVYAWGGNSYGQLGNGTT 314
Score = 92.8 bits (229), Expect = 3e-16, Method: Composition-based stats.
Identities = 85/293 (29%), Positives = 126/293 (43%), Gaps = 38/293 (12%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + V AG SLA+ + G ++ WG L S G + S TP V + +
Sbjct: 119 LPSVAQVSAGESHSLALTDDGRVFAWG---LNSSGQLGDGTTADSRTPVQVQGLATDSTI 175
Query: 61 KV-ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
KV A G H +AL S G + +WG N++GQLG P + Q P
Sbjct: 176 KVVAAGGNHSLALTSDGRVF--------AWGKNSSGQLGNNSTVDSSIPVQV----QGLP 223
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V V G H+ LT R + +GL +GQLG GTT ++ P V LP
Sbjct: 224 ANVTAVAAGGNHSLALTSDGR--------IYAWGLNSSGQLGDGTTSNSSTPVLVAGLPA 275
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
V+V G H+ + G V++WG G N + T +E P+ ++G
Sbjct: 276 GSKPVAVSAGKDHSLALMQDGTVYAWG-GNSYGQLGNGTTTASEM-----PVQVTG---- 325
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ V+ G + ++ +T DGY +++WG SG LG G T + P V
Sbjct: 326 ---LANVTAVSAGGSDSLALTSDGY-VYAWGLNSSGQLGDGTTSNRNTPVRVF 374
Score = 85.5 bits (210), Expect = 5e-14, Method: Composition-based stats.
Identities = 71/234 (30%), Positives = 104/234 (44%), Gaps = 34/234 (14%)
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
V+ G H + L S D ++WG N NGQLG G R P T Q P +
Sbjct: 75 VSAGGSHSLVLTS--------DQTVWAWGDNTNGQLGDGTTTGRQTP----TPAQGLP-S 121
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V +V+ G H+ LT R + +GL +GQLG GTT + P QV+ L
Sbjct: 122 VAQVSAGESHSLALTDDGR--------VFAWGLNSSGQLGDGTTADSRTPVQVQGLATDS 173
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V G H+ ++S G V++WG + L N D+ P+ + G
Sbjct: 174 TIKVVAAGGNHSLALTSDGRVFAWGKNS------SGQLGNNSTVDSSIPVQVQGLP---- 223
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
+ VA G H++ +T DG ++++WG SG LG G T + P +V P
Sbjct: 224 --ANVTAVAAGGNHSLALTSDG-RIYAWGLNSSGQLGDGTTSNSSTPVLVAGLP 274
>gi|126649317|ref|XP_001388330.1| uvb-resistance protein uvr8 [Cryptosporidium parvum Iowa II]
gi|32398856|emb|CAD98566.1| uvb-resistance protein uvr8, possible [Cryptosporidium parvum]
gi|126117424|gb|EAZ51524.1| uvb-resistance protein uvr8, putative [Cryptosporidium parvum Iowa
II]
Length = 487
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 132/294 (44%), Gaps = 41/294 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S I V G S AI N+G L +WG + GF + P + V+
Sbjct: 41 LSSISKVSCGSNYSAAITNSGDLILWGY----GGCGQLGFGNLEDCL-VPRVNLSLKNVI 95
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VAC H A++S GE Y+WG + NG+LG G E + ++ +
Sbjct: 96 QVACSDRHTAAILSNGE--------LYTWGCSKNGKLGHGQFELSISNNVVSQPMKVKAL 147
Query: 121 ---AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V +V+CGS+HT LT K+ T+GLG G+LGHG TQ P+ ++ L
Sbjct: 148 EGEKVIQVSCGSYHTGCLTDDKK--------ALTWGLGLQGRLGHGDTQDIFTPKLIESL 199
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ + + CG HT+++ G ++ +G L D + P L+ G
Sbjct: 200 AG-LPIKEISCGGHHTAILLVTGKLYMFGGG------AFGKLGFGSTDDVLIPRLLEG-- 250
Query: 238 PHGPKFQD--PVQVACGAAHTVLVTDDGYKLWSWGR-GRSGVLGTGKTIDFFAP 288
+D +V+ G+ H+ VT G K+++WG+ GR G + G DF +P
Sbjct: 251 ----PLEDIQITKVSLGSQHSAAVTKCG-KVYTWGQGGRLGHIFNGPEHDFLSP 299
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 122/274 (44%), Gaps = 35/274 (12%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT----PSPVWDFHG 56
+ + V + AI + G L+ WG C G F L S P V G
Sbjct: 91 LKNVIQVACSDRHTAAILSNGELYTWG-CSKNGKLGHGQFELSISNNVVSQPMKVKALEG 149
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
V++V+CGS H L +D +WG G+LG GD + PK+IE+
Sbjct: 150 EKVIQVSCGSYHTGCLT--------DDKKALTWGLGLQGRLGHGDTQDIFTPKLIESL-- 199
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ + E++CG HTA+L ++ + FG G G+LG G+T L+P ++
Sbjct: 200 -AGLPIKEISCGGHHTAIL--------LVTGKLYMFGGGAFGKLGFGSTDDVLIPRLLEG 250
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + + V G H++ V+ G V++WG LG N D +SP +S
Sbjct: 251 PLEDIQITKVSLGSQHSAAVTKCGKVYTWGQGGRLGHIFNGP-----EHDFLSPKRLS-- 303
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG 270
+ V ++CG +H+V ++D G +++WG
Sbjct: 304 ---NLEKAFIVDISCGNSHSVALSDVG-DIYTWG 333
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 40/246 (16%)
Query: 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
H ++ KV+CGS + A+ ++G DL+ WG GQLG G+ E L P++ +
Sbjct: 40 HLSSISKVSCGSNYSAAITNSG------DLIL--WGYGGCGQLGFGNLEDCLVPRVNLSL 91
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALV---- 170
V +V C HTA + + +T+G +NG+LGHG + ++
Sbjct: 92 KN-----VIQVACSDRHTAAI--------LSNGELYTWGCSKNGKLGHGQFELSISNNVV 138
Query: 171 --PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
P +VK L + ++ V CG +HT ++ +WG LGL L + D
Sbjct: 139 SQPMKVKAL-EGEKVIQVSCGSYHTGCLTDDKKALTWG----LGL--QGRLGHGDTQDIF 191
Query: 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+P LI K +++CG HT ++ G KL+ +G G G LG G T D P
Sbjct: 192 TPKLIESLAGLPIK-----EISCGGHHTAILLVTG-KLYMFGGGAFGKLGFGSTDDVLIP 245
Query: 289 AIVLWP 294
++ P
Sbjct: 246 RLLEGP 251
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 25/206 (12%)
Query: 89 WGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESM 148
WG+ GQ G E P +++ S ++ +V+CGS ++A +T+ D++
Sbjct: 13 WGSTEYGQHGSKGEEVSPGPHLVDGLRHLS--SISKVSCGSNYSAAITN---SGDLI--- 64
Query: 149 CWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+G G GQLG G + LVP L ++ V C HT+ + S G++++WG
Sbjct: 65 --LWGYGGCGQLGFGNLEDCLVPRVNLSLKN---VIQVACSDRHTAAILSNGELYTWGCS 119
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF---QDPVQVACGAAHTVLVTDDGYK 265
K N L + +IS ++S P K + +QV+CG+ HT +TDD K
Sbjct: 120 K------NGKLGHGQFELSISNNVVSQ--PMKVKALEGEKVIQVSCGSYHTGCLTDD-KK 170
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIV 291
+WG G G LG G T D F P ++
Sbjct: 171 ALTWGLGLQGRLGHGDTQDIFTPKLI 196
>gi|427782019|gb|JAA56461.1| Putative hect e3 ubiquitin ligase hect e3 ubiquitin ligase
[Rhipicephalus pulchellus]
Length = 1480
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 130/289 (44%), Gaps = 41/289 (14%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
V +GG LA+ G ++ WG D G + S P + G VV VACG
Sbjct: 673 VNSGGKHCLALSAEGEVYSWGE---GDDGKLGHGNKSSCERPRVIESLRGKEVVDVACGG 729
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
H + ++GE Y+WG G+LG GD + +LRPK +E S W V V
Sbjct: 730 AHSACITASGEL--------YTWGKGRYGRLGHGDSDDQLRPKKVEAL---SGWRVRCVA 778
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSV 186
CGS L + W++G G+ G+LG G + VP +V +L Q + ++ V
Sbjct: 779 CGSGDAQTLCVTD------DDCVWSWGDGDYGKLGRGGSDGCKVPLRV-DLLQGMGVIRV 831
Query: 187 DCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+CG + ++++G V++WG KG LG + + R + A+ G K
Sbjct: 832 ECGSQFSVALTASGSVYTWG--KGDYHRLGHGTDDHVRRPKRVAAL----------QGKK 879
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +A G+ H V TD G ++++WG G LG G P +V
Sbjct: 880 V---ICIAVGSLHCVACTDTG-EVYTWGDNDEGQLGDGTVNAIHKPRLV 924
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 38/225 (16%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V G +H +AL + GE Y SWG ++G+LG G++ S RP++IE+
Sbjct: 671 VVVNSGGKHCLALSAEGEVY--------SWGEGDDGKLGHGNKSSCERPRVIESLRGKE- 721
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CG H+A +T +T+G G G+LGHG + L P++V+ L
Sbjct: 722 --VVDVACGGAHSACIT--------ASGELYTWGKGRYGRLGHGDSDDQLRPKKVEALSG 771
Query: 180 Y-VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPI---LISG 235
+ V V+ G T V+ VWSWG + G L R + P+ L+ G
Sbjct: 772 WRVRCVACGSGDAQTLCVTDDDCVWSWG-DGDYG-----KLGRGGSDGCKVPLRVDLLQG 825
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
G ++V CG+ +V +T G +++WG+G LG G
Sbjct: 826 MG--------VIRVECGSQFSVALTASG-SVYTWGKGDYHRLGHG 861
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 98/261 (37%), Gaps = 44/261 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V GG S I +G L+ WG G P V G V V
Sbjct: 721 EVVDVACGGAHSACITASGELYTWGK---GRYGRLGHGDSDDQLRPKKVEALSGWRVRCV 777
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L +D +SWG + G+LG G + P ++ V
Sbjct: 778 ACGSGDAQTLCVT------DDDCVWSWGDGDYGKLGRGGSDGCKVPLRVDLLQG---MGV 828
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
V CGS + LT +T+G G+ +LGHGT P++V L Q
Sbjct: 829 IRVECGSQFSVALT--------ASGSVYTWGKGDYHRLGHGTDDHVRRPKRVAAL-QGKK 879
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
++ + G H + G+V++WG + GD + N H P+
Sbjct: 880 VICIAVGSLHCVACTDTGEVYTWGDND-----------EGQLGDG------TVNAIHKPR 922
Query: 243 FQDPVQ------VACGAAHTV 257
+Q V+CG+AHTV
Sbjct: 923 LVAALQGKKINRVSCGSAHTV 943
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 91/207 (43%), Gaps = 30/207 (14%)
Query: 89 WGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESM 148
WG N+ GQLG + P E + P V G T +
Sbjct: 586 WGHNHRGQLGGVEGAKVKLPMPCEALSALRPIQVV----GGEQTLFAV-------TADGK 634
Query: 149 CWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWSWG 206
+ G G G+LG G T S P ++ L Q+V++ V V+ G H +S+ G+V+SWG
Sbjct: 635 VYATGYGAGGRLGIGGTDSVSCPTLLESL-QHVFIKKVVVNSGGKHCLALSAEGEVYSWG 693
Query: 207 M--EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
+ LG +S R +++ + ++ V VACG AH+ +T G
Sbjct: 694 EGDDGKLGHGNKSSCERPRVIESL-------------RGKEVVDVACGGAHSACITASG- 739
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+L++WG+GR G LG G + D P V
Sbjct: 740 ELYTWGKGRYGRLGHGDSDDQLRPKKV 766
>gi|410920940|ref|XP_003973941.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Takifugu rubripes]
Length = 4822
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3037 AVHSGGRHAMALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3093
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE YSWG G+LG GD ++LRPK+++ V +V
Sbjct: 3094 SSHSAAITSSGE--------LYSWGLGEYGRLGHGDNATQLRPKLVKVLLGHR---VIQV 3142
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3143 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3195
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + P ++ G G K
Sbjct: 3196 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRK------PQMV--EGLRGKKI-- 3245
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3246 -VHVAVGALHCLAVTDTG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3289
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 129/292 (44%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV +A G
Sbjct: 4031 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGVEVVDIAAG 4087
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + ++GE ++WG G+LG GD E +L+PK+++ V +V
Sbjct: 4088 GAHSACITASGE--------LFTWGKGRYGRLGHGDSEDQLKPKLVDALQGHR---VIDV 4136
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + M W++G G+ G+LG G + +P ++ L + +
Sbjct: 4137 ACGSGDAQTLCLTD--------DDMVWSWGDGDYGKLGRGGSDGCKIPMKIDSLTG-LGV 4187
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4188 TKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4235
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4236 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4283
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 117/244 (47%), Gaps = 38/244 (15%)
Query: 44 SSFTPSPVWDFHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD 101
++ P + +VK+A +H +AL S GE + SWG + G+LG GD
Sbjct: 466 TTLAPMLIHSLSSRKIVKLAAHPDGQHYLALSSNGEVF--------SWGCGDGGRLGHGD 517
Query: 102 RESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQL 160
P +I FN + + V + CGS ++A++T ++ +T+G G G+L
Sbjct: 518 ATYLEEPTMIAAFNGKQAGKHVVHIACGSTYSAVIT--------IDGELYTWGRGNYGRL 569
Query: 161 GHGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNAS 218
GHG+++ P V L + + +V V CG T V+ G VWSWG + G
Sbjct: 570 GHGSSEDQTTPMLVTAL-KGLKVVDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----K 622
Query: 219 LTRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGV 276
L R + +P L+ K Q D V+V CG+ +V +T DG ++++WG+G +
Sbjct: 623 LGRGGSDGCKTPKLVE-------KLQDLDIVKVCCGSQFSVALTKDG-QVYTWGKGDNQR 674
Query: 277 LGTG 280
LG G
Sbjct: 675 LGHG 678
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 112/255 (43%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S AI ++G L+ WG L + G + P V GH V++V
Sbjct: 3086 RIRDIACGSSHSAAITSSGELYSWG---LGEYGRLGHGDNATQLRPKLVKVLLGHRVIQV 3142
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3143 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3193
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHGT P+ V+ L +
Sbjct: 3194 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGTDVHVRKPQMVEGL-RGKK 3244
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ G V++WG + G N + T N P L+ G +
Sbjct: 3245 IVHVAVGALHCLAVTDTGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3293
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3294 GQKITRVACGSSHSV 3308
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 109/257 (42%), Gaps = 36/257 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + AGG S I +G L+ WG G P V GH V+ V
Sbjct: 4080 EVVDIAAGGAHSACITASGELFTWGKGRY---GRLGHGDSEDQLKPKLVDALQGHRVIDV 4136
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L +D + +SWG + G+LG G + P I++ + V
Sbjct: 4137 ACGSGDAQTLCLT------DDDMVWSWGDGDYGKLGRGGSDGCKIPMKIDSL---TGLGV 4187
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4188 TKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-QGKK 4238
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++++ G H + G+V++WG E LG ++ R P L++ G
Sbjct: 4239 VIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVA--ALQG 4288
Query: 241 PKFQDPVQVACGAAHTV 257
K +VACG+AHT+
Sbjct: 4289 KKIN---RVACGSAHTL 4302
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 124/265 (46%), Gaps = 44/265 (16%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
+++WG L D GG PS VV+VA GS+ + A+ G+ Y
Sbjct: 2947 VFVWG---LNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTVEGKIY--- 3000
Query: 83 DLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTC--GSFHTALLTHRK 139
+ G NG+LGLG + P+ I S + V +V G H LT
Sbjct: 3001 -----ACGEATNGRLGLGLSSGTIPIPRQITAL---SNYVVKKVAVHSGGRHAMALT--- 3049
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
++ +++G G++G+LGH + + P ++ L + + + CG H++ ++S+
Sbjct: 3050 -----VDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEAL-KTKRIRDIACGSSHSAAITSS 3103
Query: 200 GDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AH 255
G+++SWG+ E G LG NA+ R P L+ H +QVACG+ A
Sbjct: 3104 GELYSWGLGEYGRLGHGDNATQLR--------PKLVKVLLGH-----RVIQVACGSRDAQ 3150
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTG 280
T+ +TD+G ++SWG G G LG G
Sbjct: 3151 TLALTDEGL-VFSWGDGDFGKLGRG 3174
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 90/211 (42%), Gaps = 25/211 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+ + G S I G L+ WG + G S TP V G VV V
Sbjct: 538 HVVHIACGSTYSAVITIDGELYTWGR---GNYGRLGHGSSEDQTTPMLVTALKGLKVVDV 594
Query: 63 ACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
ACGS +A+ G+ + SWG + G+LG G + PK++E QD
Sbjct: 595 ACGSGDAQTLAVTENGQVW--------SWGDGDYGKLGRGGSDGCKTPKLVEKL-QD--L 643
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ +V CGS + LT + +T+G G+N +LGHGT + P+ + L Q
Sbjct: 644 DIVKVCCGSQFSVALTK--------DGQVYTWGKGDNQRLGHGTDEHVRFPKLLDTL-QG 694
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
+V V G H ++ G+V SWG L
Sbjct: 695 KKVVDVAVGSTHCLALTDDGEVHSWGSNDKL 725
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 118/269 (43%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3933 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPTEALATLRPVQLIGGEQTLFAVT 3989
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ V V G H
Sbjct: 3990 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIRKV-AVNSGGKHCL 4040
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + V +V + G H+
Sbjct: 4041 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGVEVVDIAAGGAHS 4091
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ ++++G++++WG + L ++ D + P L+ H + VACG+
Sbjct: 4092 ACITASGELFTWGKGR------YGRLGHGDSEDQLKPKLVDALQGH-----RVIDVACGS 4140
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4141 GDAQTLCLTDDDM-VWSWGDGDYGKLGRG 4168
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 21/149 (14%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQV-----KELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+++G G+ G+LGHG P + K+ ++V V + CG +++V++ G++++
Sbjct: 503 FSWGCGDGGRLGHGDATYLEEPTMIAAFNGKQAGKHV--VHIACGSTYSAVITIDGELYT 560
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDD 262
WG L + D +P+L++ K V VACG+ A T+ VT++
Sbjct: 561 WGRGN------YGRLGHGSSEDQTTPMLVTA-----LKGLKVVDVACGSGDAQTLAVTEN 609
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G ++WSWG G G LG G + P +V
Sbjct: 610 G-QVWSWGDGDYGKLGRGGSDGCKTPKLV 637
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG-NGPHGPKFQDPVQVA 250
H +SS G+V+SWG G L +A P +I+ NG K V +A
Sbjct: 492 HYLALSSNGEVFSWGCGDG------GRLGHGDATYLEEPTMIAAFNGKQAGKHV--VHIA 543
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
CG+ ++ ++T DG +L++WGRG G LG G + D P +V
Sbjct: 544 CGSTYSAVITIDG-ELYTWGRGNYGRLGHGSSEDQTTPMLV 583
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 92/209 (44%), Gaps = 30/209 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P E P + G T +
Sbjct: 3943 YGWGHNHRGQLGGIEGAKVKVPTPTEALATLRPVQLI----GGEQTLFAV-------TAD 3991
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T+S P ++ + Q+V++ V+V+ G H +SS G+V+S
Sbjct: 3992 GKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIRKVAVNSGGKHCLALSSEGEVYS 4050
Query: 205 WG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG E G LG + R +++ + + V +A G AH+ +T
Sbjct: 4051 WGEAEDGKLGHGNRSPCDRPRVIESLRGVEV-------------VDIAAGGAHSACITAS 4097
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G +L++WG+GR G LG G + D P +V
Sbjct: 4098 G-ELFTWGKGRYGRLGHGDSEDQLKPKLV 4125
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G + LA+ + G ++ WG+ D +G + + P+ V G + +V
Sbjct: 3244 KIVHVAVGALHCLAVTDTGQVYAWGD---NDHGQQGNGTTTVNRKPTLVQGLEGQKITRV 3300
Query: 63 ACGSEHVVA 71
ACGS H VA
Sbjct: 3301 ACGSSHSVA 3309
>gi|338533363|ref|YP_004666697.1| RCC1 repeat-containing protein [Myxococcus fulvus HW-1]
gi|337259459|gb|AEI65619.1| RCC1 repeat-containing protein [Myxococcus fulvus HW-1]
Length = 1379
Score = 98.6 bits (244), Expect = 6e-18, Method: Composition-based stats.
Identities = 85/294 (28%), Positives = 124/294 (42%), Gaps = 49/294 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + ++ AG ++A+ G +W WG L D +T TP V G
Sbjct: 1076 LTGVTAISAGDAHTVALRRDGTVWAWGRNSWGQLGDGTT------THRATPVQVQGLTG- 1128
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+ +A GS H VAL +D ++WG N+ GQLG G R P ++
Sbjct: 1129 -VIAIAAGSLHTVAL--------RQDGTVWAWGRNSWGQLGDGTTTHRATPVQVQGLT-- 1177
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + GS HT L + W +G + GQLG GTT L P QV+ L
Sbjct: 1178 ---GVIAIAAGSLHTVALRQ--------DGTVWAWGFNDLGQLGDGTTTRRLTPAQVQGL 1226
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ ++ G FHT+ V G W+WG G + + T D +P+ + G
Sbjct: 1227 TG---VTTIAAGYFHTAAVRQDGTAWTWGFNL-WGQLGDGTFT-----DRATPVQVQG-- 1275
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A G AHTV+V +DG +W+WG LG G + D P V
Sbjct: 1276 -----LTGVSALAAGYAHTVVVGEDG-TVWAWGNNSGTQLGNGSSTDRSTPVQV 1323
Score = 97.4 bits (241), Expect = 1e-17, Method: Composition-based stats.
Identities = 87/295 (29%), Positives = 123/295 (41%), Gaps = 49/295 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + ++ AG + ++A+ G +W WG L D +T TP V G
Sbjct: 1126 LTGVIAIAAGSLHTVALRQDGTVWAWGRNSWGQLGDGTT------THRATPVQVQGLTG- 1178
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+ +A GS H VAL +D ++WG N+ GQLG G RL P ++
Sbjct: 1179 -VIAIAAGSLHTVAL--------RQDGTVWAWGFNDLGQLGDGTTTRRLTPAQVQGLT-- 1227
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + G FHTA + + WT+G GQLG GT P QV+ L
Sbjct: 1228 ---GVTTIAAGYFHTAAVRQ--------DGTAWTWGFNLWGQLGDGTFTDRATPVQVQGL 1276
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
L + G HT VV G VW+WG G L +S R+ +P+ +
Sbjct: 1277 TGVSALAA---GYAHTVVVGEDGTVWAWGNNSGTQLGNGSSTDRS------TPVQVEA-- 1325
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+A G HTV ++ DG W WGR G +G G T D P V+
Sbjct: 1326 -----LTGAFSLAAGRFHTVAMSPDGAG-WGWGRNNLGQVGDGTTADRPTPVNVM 1374
Score = 87.8 bits (216), Expect = 9e-15, Method: Composition-based stats.
Identities = 81/291 (27%), Positives = 114/291 (39%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ I ++ A ++++A+ G +W WG+ G + TP V G V
Sbjct: 470 LEGITAIAASNLLTVAVRQDGTVWAWGDNA---RGQLGDGTTTRRLTPVQVQGLAG--VT 524
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA H+VA+ +D ++WG GQLG G R P ++
Sbjct: 525 AVAASDYHLVAV--------RQDGTVWAWGVGFWGQLGDGTGMDRSTPVQVQGLT----- 571
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + GS HT L + W +G GQLG GTT L P QV P
Sbjct: 572 GVTAIAAGSNHTVALRQ--------DGTVWAWGFNNYGQLGDGTTAGHLTPVQV---PGV 620
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
V++ G HT + G VW+WG L + R+ SP+ + G
Sbjct: 621 TGAVAIAAGGSHTVALLQDGTVWTWGYNIWGQLGDGTTTHRH------SPVQVQG----- 669
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D + +A HTV V DG +W+WG SG LG G T P V
Sbjct: 670 --LADVIAIATNNGHTVAVRQDG-TVWTWGLNSSGQLGDGTTTQRLTPVQV 717
Score = 85.1 bits (209), Expect = 6e-14, Method: Composition-based stats.
Identities = 80/291 (27%), Positives = 115/291 (39%), Gaps = 41/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + ++ AGG A G LW WG L GG L P V +V
Sbjct: 924 LMDVTAMAAGGYHMAAAGQDGTLWTWG---LNSYGQLGGGPLSYRLLPVQVQGLM--SVT 978
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H+ A G+D ++WG N+ GQLG G L P ++
Sbjct: 979 AMAAGGYHMAA--------AGQDGTLWTWGLNSYGQLGGGPLSQSLTPVQVQV---QGLT 1027
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G HT + + W++G GQLG GTT +L P QV+ L
Sbjct: 1028 GVAAIAAGFSHTLAVRQ--------DGTVWSWGGNAYGQLGDGTTAQSLTPVQVQGLTG- 1078
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ ++ G HT + G VW+WG L + R +P+ + G
Sbjct: 1079 --VTAISAGDAHTVALRRDGTVWAWGRNSWGQLGDGTTTHR------ATPVQVQG----- 1125
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +A G+ HTV + DG +W+WGR G LG G T P V
Sbjct: 1126 --LTGVIAIAAGSLHTVALRQDG-TVWAWGRNSWGQLGDGTTTHRATPVQV 1173
Score = 82.0 bits (201), Expect = 5e-13, Method: Composition-based stats.
Identities = 78/291 (26%), Positives = 114/291 (39%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ AGG ++A+ G LW WG+ G + S+ P V G V
Sbjct: 270 LTGVTAIAAGGGFAVALRQDGTLWAWGS---NSRGQLGNGTTFGSYRPEQVQGLTG--VT 324
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A H VAL +D ++WG N++GQLG G R P ++
Sbjct: 325 AIAASGIHTVAL--------RQDGTLWAWGNNSSGQLGDGTTTVRFTPVQVQGLT----- 371
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G +T + W +G E GQLG GTT L P QV+ L
Sbjct: 372 GVTAIAAGYLYTVASKQ--------DGTVWAWGDNEWGQLGDGTTTRRLTPVQVQGLTG- 422
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ ++ G +T G VW+WG K L A R+ G+ + G
Sbjct: 423 --VTAIAAGYLYTVASKQDGTVWAWGDNKRSQLGEGAVSQRHTPGE------VQG----- 469
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +A TV V DG +W+WG G LG G T P V
Sbjct: 470 --LEGITAIAASNLLTVAVRQDG-TVWAWGDNARGQLGDGTTTRRLTPVQV 517
Score = 79.3 bits (194), Expect = 3e-12, Method: Composition-based stats.
Identities = 84/328 (25%), Positives = 125/328 (38%), Gaps = 67/328 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ A G+ ++A+ G LW WGN S G + FTP V G V
Sbjct: 320 LTGVTAIAASGIHTVALRQDGTLWAWGN---NSSGQLGDGTTTVRFTPVQVQGLTG--VT 374
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN----- 115
+A G + VA +D ++WG N GQLG G RL P ++
Sbjct: 375 AIAAGYLYTVA--------SKQDGTVWAWGDNEWGQLGDGTTTRRLTPVQVQGLTGVTAI 426
Query: 116 -----------QD-SPWAVYEVTCGSFHTALLTHRKRPNDM--LESM------------- 148
QD + WA + ++ R P ++ LE +
Sbjct: 427 AAGYLYTVASKQDGTVWAWGDNKRSQLGEGAVSQRHTPGEVQGLEGITAIAASNLLTVAV 486
Query: 149 -----CWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVW 203
W +G GQLG GTT L P QV+ L + + D +H V G VW
Sbjct: 487 RQDGTVWAWGDNARGQLGDGTTTRRLTPVQVQGLAGVTAVAASD---YHLVAVRQDGTVW 543
Query: 204 SWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
+WG+ L + R+ +P+ + G +A G+ HTV + DG
Sbjct: 544 AWGVGFWGQLGDGTGMDRS------TPVQVQG-------LTGVTAIAAGSNHTVALRQDG 590
Query: 264 YKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+W+WG G LG G T P V
Sbjct: 591 -TVWAWGFNNYGQLGDGTTAGHLTPVQV 617
Score = 79.3 bits (194), Expect = 4e-12, Method: Composition-based stats.
Identities = 79/281 (28%), Positives = 108/281 (38%), Gaps = 45/281 (16%)
Query: 11 GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVV 70
G +LA+ G +W WGN D G + F SPV G T +A G H V
Sbjct: 82 GNHTLAVRQDGTVWAWGN---NDDGQLGDGTTTRRF--SPVQVMTGATA--IAAGIYHTV 134
Query: 71 ALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF 130
A +D ++WG N++GQLG G R P ++ V V G
Sbjct: 135 A--------ASQDGTVWTWGRNSSGQLGDGTSIQRFSPVQVQGLT-----GVTAVAAGRN 181
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
H+A L WT+G GQLG GT+ L P QV+ L + + + D
Sbjct: 182 HSAALGQ--------GGTVWTWGDNLVGQLGDGTSTQRLTPVQVQGLTGVIAISANDS-- 231
Query: 191 FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
T + G VW+WG L + R +P+ + G +A
Sbjct: 232 -ETVALRQDGTVWAWGNNSSGQLGDGTTTVR------FTPVQVLG-------LTGVTAIA 277
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G V + DG LW+WG G LG G T + P V
Sbjct: 278 AGGGFAVALRQDG-TLWAWGSNSRGQLGNGTTFGSYRPEQV 317
Score = 75.9 bits (185), Expect = 3e-11, Method: Composition-based stats.
Identities = 84/301 (27%), Positives = 120/301 (39%), Gaps = 71/301 (23%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ AGG ++A+ G +W WG L D +T + SPV V+ +
Sbjct: 625 AIAAGGSHTVALLQDGTVWTWGYNIWGQLGDGTT--------THRHSPVQVQGLADVIAI 676
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A + H VA+ +D ++WG N++GQLG G RL P +
Sbjct: 677 ATNNGHTVAV--------RQDGTVWTWGLNSSGQLGDGTTTQRLTPVQVHGLTD------ 722
Query: 123 YEVTCGSFHTALLTHRKRPNDMLES-MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
TA+LT + M + W +G GQLG GTT L P QV+ L +
Sbjct: 723 --------ATAILTSSSQTVAMRQDRTLWAWGDNHWGQLGDGTTTRRLTPVQVQGL---M 771
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ ++ G +H + G +W+WG+ N G G GP
Sbjct: 772 DVTAMAAGGYHMAAAGQDGTLWTWGL--------------NSYGQL-------GGGPLSY 810
Query: 242 KFQDPVQV-----------ACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ PVQV A G +HTV V DG +W+WG SG LG G T P
Sbjct: 811 RLL-PVQVQGLTSATATAIAAGDSHTVAVRQDG-TVWAWGSNFSGQLGDGTTAQSLTPVQ 868
Query: 291 V 291
V
Sbjct: 869 V 869
Score = 75.5 bits (184), Expect = 6e-11, Method: Composition-based stats.
Identities = 72/280 (25%), Positives = 111/280 (39%), Gaps = 43/280 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ AG ++A+ G +W WG + G + TP V G V
Sbjct: 570 LTGVTAIAAGSNHTVALRQDGTVWAWG---FNNYGQLGDGTTAGHLTPVQVPGVTG--AV 624
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H VAL+ +D ++WG N GQLG G R P ++
Sbjct: 625 AIAAGGSHTVALL--------QDGTVWTWGYNIWGQLGDGTTTHRHSPVQVQGLAD---- 672
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + + HT + + WT+GL +GQLG GTT L P QV L
Sbjct: 673 -VIAIATNNGHTVAVRQ--------DGTVWTWGLNSSGQLGDGTTTQRLTPVQVHGLTDA 723
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+++ T + +W+WG + G + + TR ++P+ + G
Sbjct: 724 TAILTSSS---QTVAMRQDRTLWAWG-DNHWGQLGDGTTTRR-----LTPVQVQG----- 769
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
D +A G H DG LW+WG G LG G
Sbjct: 770 --LMDVTAMAAGGYHMAAAGQDG-TLWTWGLNSYGQLGGG 806
Score = 75.1 bits (183), Expect = 6e-11, Method: Composition-based stats.
Identities = 78/295 (26%), Positives = 112/295 (37%), Gaps = 51/295 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
M+ ++ AG ++A G +W WG S G + + F+P V G V
Sbjct: 120 MTGATAIAAGIYHTVAASQDGTVWTWGR---NSSGQLGDGTSIQRFSPVQVQGLTG--VT 174
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H AL G+ ++WG N GQLG G RL P ++
Sbjct: 175 AVAAGRNHSAAL--------GQGGTVWTWGDNLVGQLGDGTSTQRLTPVQVQGLT----- 221
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++ T L + W +G +GQLG GTT P QV L
Sbjct: 222 GVIAISANDSETVALRQ--------DGTVWAWGNNSSGQLGDGTTTVRFTPVQVLGLTG- 272
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ ++ G + G +W+WG S +R + G+ + G +
Sbjct: 273 --VTAIAAGGGFAVALRQDGTLWAWG-----------SNSRGQLGNGTT------FGSYR 313
Query: 241 PK----FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P+ +A HTV + DG LW+WG SG LG G T F P V
Sbjct: 314 PEQVQGLTGVTAIAASGIHTVALRQDG-TLWAWGNNSSGQLGDGTTTVRFTPVQV 367
Score = 74.3 bits (181), Expect = 1e-10, Method: Composition-based stats.
Identities = 57/211 (27%), Positives = 93/211 (44%), Gaps = 32/211 (15%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
+D ++WG N++GQLG G R P + T + G +HT +
Sbjct: 90 QDGTVWAWGNNDDGQLGDGTTTRRFSPVQVMT-------GATAIAAGIYHTVAASQ---- 138
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ WT+G +GQLG GT+ P QV+ L + +V G H++ + G
Sbjct: 139 ----DGTVWTWGRNSSGQLGDGTSIQRFSPVQVQGLTG---VTAVAAGRNHSAALGQGGT 191
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
VW+WG + +G + + T+ ++P+ + G + ++ + TV +
Sbjct: 192 VWTWG-DNLVGQLGDGTSTQR-----LTPVQVQG-------LTGVIAISANDSETVALRQ 238
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
DG +W+WG SG LG G T F P VL
Sbjct: 239 DG-TVWAWGNNSSGQLGDGTTTVRFTPVQVL 268
Score = 72.8 bits (177), Expect = 4e-10, Method: Composition-based stats.
Identities = 74/291 (25%), Positives = 107/291 (36%), Gaps = 39/291 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + ++ AGG A G LW WG L GG L P V T
Sbjct: 770 LMDVTAMAAGGYHMAAAGQDGTLWTWG---LNSYGQLGGGPLSYRLLPVQVQGLTSATAT 826
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H VA+ +D ++WG+N +GQLG G L P ++
Sbjct: 827 AIAAGDSHTVAV--------RQDGTVWAWGSNFSGQLGDGTTAQSLTPVQVQV---QGLM 875
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G +H A + WT+GL GQLG G L+P QV+ L
Sbjct: 876 DVTAMAAGGYHMAAAGQ--------DGTLWTWGLNSYGQLGGGPLSYRLLPVQVQGL--- 924
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ + ++ G +H + G +W+WG+ L + P+ + G
Sbjct: 925 MDVTAMAAGGYHMAAAGQDGTLWTWGLNS------YGQLGGGPLSYRLLPVQVQG----- 973
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A G H DG LW+WG G LG G P V
Sbjct: 974 --LMSVTAMAAGGYHMAAAGQDG-TLWTWGLNSYGQLGGGPLSQSLTPVQV 1021
Score = 65.1 bits (157), Expect = 6e-08, Method: Composition-based stats.
Identities = 68/270 (25%), Positives = 103/270 (38%), Gaps = 45/270 (16%)
Query: 14 SLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVV 70
++A+ LW WG+ L D +T TP V V +A G H+
Sbjct: 733 TVAMRQDRTLWAWGDNHWGQLGDGTT------TRRLTPVQVQGLM--DVTAMAAGGYHMA 784
Query: 71 ALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF 130
A G+D ++WG N+ GQLG G RL P ++ + G
Sbjct: 785 A--------AGQDGTLWTWGLNSYGQLGGGPLSYRLLPVQVQGLTSA---TATAIAAGDS 833
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
HT + + W +G +GQLG GTT +L P QV ++ + + ++ G
Sbjct: 834 HTVAVRQ--------DGTVWAWGSNFSGQLGDGTTAQSLTPVQV-QVQGLMDVTAMAAGG 884
Query: 191 FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
+H + G +W+WG+ L + P+ + G D +A
Sbjct: 885 YHMAAAGQDGTLWTWGLNS------YGQLGGGPLSYRLLPVQVQG-------LMDVTAMA 931
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
G H DG LW+WG G LG G
Sbjct: 932 AGGYHMAAAGQDG-TLWTWGLNSYGQLGGG 960
>gi|397599967|gb|EJK57568.1| hypothetical protein THAOC_22376, partial [Thalassiosira oceanica]
Length = 657
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 114/247 (46%), Gaps = 33/247 (13%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
+ P G + V CGS H A+ S G + +WG G+LG G+
Sbjct: 48 YVPRLTHSLAGQVITHVTCGSYHTAAVSSKGNLF--------TWGGGMYGKLGHGNESGH 99
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
PK +++ AV ++ CGS HTA++T R +T+G ENG GHG T
Sbjct: 100 STPKRVDSL---VGLAVVDIACGSRHTAIVTSR--------GCLYTWGDKENGVAGHGDT 148
Query: 166 QS-ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA 224
+ P+ ++ L + CG FHT ++ AG+V++WG K L A RN
Sbjct: 149 EGHQYTPKLLERLSGKRVVQLSACG-FHTGCLTDAGEVYTWGEGKFGRLGHGAE--RNCH 205
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
+ L+ + PVQ++CG H+ +VT DG K++++G G G LG G ++
Sbjct: 206 SPRLVETLLG---------KRPVQISCGGFHSAVVTADG-KMYTFGGGEHGQLGHGDKVN 255
Query: 285 FFAPAIV 291
P +V
Sbjct: 256 KVKPTLV 262
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 129/294 (43%), Gaps = 46/294 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPD--SSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
I V G + A+ + G L+ WG E G S TP V G VV
Sbjct: 61 ITHVTCGSYHTAAVSSKGNLFTWGGGMYGKLGHGNESGHS-----TPKRVDSLVGLAVVD 115
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES-RLRPKIIETFNQDSPW 120
+ACGS H + S G Y+WG NG G GD E + PK++E +
Sbjct: 116 IACGSRHTAIVTSRG--------CLYTWGDKENGVAGHGDTEGHQYTPKLLERLSGKR-- 165
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V +++ FHT LT D E W G G+ G+LGHG ++ P V+ L
Sbjct: 166 -VVQLSACGFHTGCLT------DAGEVYTW--GEGKFGRLGHGAERNCHSPRLVETLLGK 216
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
V + CG FH++VV++ G ++++G + + L + + + P L+
Sbjct: 217 -RPVQISCGGFHSAVVTADGKMYTFGGGE------HGQLGHGDKVNKVKPTLV------- 262
Query: 241 PKFQDPV---QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K D V Q+ CG +H+V +T +++++WG G G LG G P +V
Sbjct: 263 -KDLDGVFLTQITCGWSHSVALTSS-HEVYTWGNGDHGKLGHGCGKKVSTPQLV 314
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 34/181 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
++ + A G + + +AG ++ WG EG F + + +P V G
Sbjct: 165 RVVQLSACGFHTGCLTDAGEVYTWG---------EGKFGRLGHGAERNCHSPRLVETLLG 215
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
V+++CG H + + G+ Y ++G +GQLG GD+ ++++P +++ +
Sbjct: 216 KRPVQISCGGFHSAVVTADGKMY--------TFGGGEHGQLGHGDKVNKVKPTLVKDLDG 267
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ ++TCG H+ LT +T+G G++G+LGHG + P+ V++
Sbjct: 268 ---VFLTQITCGWSHSVALTSSHE--------VYTWGNGDHGKLGHGCGKKVSTPQLVEK 316
Query: 177 L 177
L
Sbjct: 317 L 317
>gi|348527836|ref|XP_003451425.1| PREDICTED: E3 ubiquitin-protein ligase HERC2 [Oreochromis niloticus]
Length = 4833
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 129/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3048 AVHSGGRHAMALTVDGKVFSWGEG---DDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3104
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE YSWG G+LG GD ++LRPK+++ V +V
Sbjct: 3105 SSHSAAITSSGE--------LYSWGLGEYGRLGHGDNTTQLRPKLVKVLLGHR---VIQV 3153
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E +++G G+ G+LG G ++ VP+ ++ L +
Sbjct: 3154 ACGSRDAQTLALTD------EGFVFSWGDGDFGKLGRGGSEGCNVPQNIERL-NGQGVCQ 3206
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + P ++ G G K
Sbjct: 3207 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRK------PQMV--EGLRGKKI-- 3256
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3257 -VHVAVGALHCLAVTDTG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3300
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 130/292 (44%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV +A G
Sbjct: 4042 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGVEVVDIAAG 4098
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + ++GE ++WG G+LG GD E +L+PK+++ V +V
Sbjct: 4099 GAHSACITASGE--------LFTWGKGRYGRLGHGDSEDQLKPKLVDALQGHR---VIDV 4147
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + M W++G G+ G+LG G + +P ++ L + +
Sbjct: 4148 ACGSGDAQTLCLTD--------DDMVWSWGDGDYGKLGRGGSDGCKIPMKIDSLTG-LGV 4198
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4199 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4246
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4247 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4294
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 116/244 (47%), Gaps = 38/244 (15%)
Query: 44 SSFTPSPVWDFHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD 101
++ P + +VK+A +H +AL S GE + SWG + G+LG GD
Sbjct: 471 TTLAPMLIHVLSSRKIVKLAAHPDGQHYLALSSNGEVF--------SWGCGDGGRLGHGD 522
Query: 102 RESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQL 160
PK+I TFN + + V V CGS ++A +T + +T+G G G+L
Sbjct: 523 TTYLEEPKMIGTFNGKQAGKHVVHVACGSTYSAAIT--------ADGELYTWGRGNYGRL 574
Query: 161 GHGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNAS 218
GHG+++ P V + + +V V CG T V+ G VWSWG + G
Sbjct: 575 GHGSSEDQTTPMVVTAF-KGLKVVDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----K 627
Query: 219 LTRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGV 276
L R + +P L+ K Q D V+V CG+ +V +T DG ++++WG+G +
Sbjct: 628 LGRGGSDGCKTPKLVE-------KLQDLDIVKVCCGSQFSVALTKDG-QVYTWGKGDNQR 679
Query: 277 LGTG 280
LG G
Sbjct: 680 LGHG 683
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 112/255 (43%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S AI ++G L+ WG L + G + P V GH V++V
Sbjct: 3097 RIRDIACGSSHSAAITSSGELYSWG---LGEYGRLGHGDNTTQLRPKLVKVLLGHRVIQV 3153
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3154 ACGSRDAQTLALTDEGF------VFSWGDGDFGKLGRGGSEGCNVPQNIERLNGQ---GV 3204
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHGT P+ V+ L +
Sbjct: 3205 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGTDVHVRKPQMVEGL-RGKK 3255
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ G V++WG + G N + T N P L+ G +
Sbjct: 3256 IVHVAVGALHCLAVTDTGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3304
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3305 GQKITRVACGSSHSV 3319
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 92/211 (43%), Gaps = 25/211 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+ V G S AI G L+ WG + G S TP V F G VV V
Sbjct: 543 HVVHVACGSTYSAAITADGELYTWGRG---NYGRLGHGSSEDQTTPMVVTAFKGLKVVDV 599
Query: 63 ACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
ACGS +A+ G+ + SWG + G+LG G + PK++E QD
Sbjct: 600 ACGSGDAQTLAVTENGQVW--------SWGDGDYGKLGRGGSDGCKTPKLVEKL-QD--L 648
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ +V CGS + LT + +T+G G+N +LGHGT + P+ + L Q
Sbjct: 649 DIVKVCCGSQFSVALTK--------DGQVYTWGKGDNQRLGHGTDEHVRYPKLLDSL-QG 699
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
+V V G H ++ G+V SWG L
Sbjct: 700 KKVVDVAVGSTHCLALTDDGEVLSWGSNDKL 730
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 109/257 (42%), Gaps = 36/257 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + AGG S I +G L+ WG G P V GH V+ V
Sbjct: 4091 EVVDIAAGGAHSACITASGELFTWGKGRY---GRLGHGDSEDQLKPKLVDALQGHRVIDV 4147
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L +D + +SWG + G+LG G + P I++ + V
Sbjct: 4148 ACGSGDAQTLCLT------DDDMVWSWGDGDYGKLGRGGSDGCKIPMKIDSL---TGLGV 4198
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4199 VKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-QGKK 4249
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++++ G H + G+V++WG E LG ++ R P L++ G
Sbjct: 4250 VIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVA--ALQG 4299
Query: 241 PKFQDPVQVACGAAHTV 257
K +VACG+AHT+
Sbjct: 4300 KKIN---RVACGSAHTL 4313
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 124/265 (46%), Gaps = 44/265 (16%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
+++WG L D GG PS VV+VA GS+ + A+ G+ Y
Sbjct: 2958 VFVWG---LNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTVEGKIY--- 3011
Query: 83 DLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTC--GSFHTALLTHRK 139
+ G NG+LGLG + P+ I S + + +V G H LT
Sbjct: 3012 -----ACGEATNGRLGLGLSSGTIPIPRQITAL---SNYVIKKVAVHSGGRHAMALT--- 3060
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
++ +++G G++G+LGH + + P ++ L + + + CG H++ ++S+
Sbjct: 3061 -----VDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEAL-KTKRIRDIACGSSHSAAITSS 3114
Query: 200 GDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AH 255
G+++SWG+ E G LG N + R P L+ H +QVACG+ A
Sbjct: 3115 GELYSWGLGEYGRLGHGDNTTQLR--------PKLVKVLLGH-----RVIQVACGSRDAQ 3161
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTG 280
T+ +TD+G+ ++SWG G G LG G
Sbjct: 3162 TLALTDEGF-VFSWGDGDFGKLGRG 3185
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 125/321 (38%), Gaps = 87/321 (27%)
Query: 14 SLAIDNAGALWMWGN-------------CPLPDSSTEGGFSLV----------------- 43
+L+ +G ++ WG+ +P +STE +L
Sbjct: 3944 TLSAGGSGTIYGWGHNHRGQLGGIEGAKVKVP-TSTEALATLRPVQLIGGEQTLFAVTAD 4002
Query: 44 --------------------SSFTPSPVWDFHGHTVVKVAC--GSEHVVALVSAGETYKG 81
S TP+ + + KVA G +H +AL S GE
Sbjct: 4003 GKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIRKVAVNSGGKHCLALSSEGEV--- 4059
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
YSWG +G+LG G+R RP++IE+ V ++ G H+A +T
Sbjct: 4060 -----YSWGEAEDGKLGHGNRSPCDRPRVIESLRG---VEVVDIAAGGAHSACIT----- 4106
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+T+G G G+LGHG ++ L P+ V L Q ++ V CG + D
Sbjct: 4107 ---ASGELFTWGKGRYGRLGHGDSEDQLKPKLVDAL-QGHRVIDVACGSGDAQTLCLTDD 4162
Query: 202 --VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLV 259
VWSWG + G L R + P+ I G V+V CG+ +V +
Sbjct: 4163 DMVWSWG-DGDYG-----KLGRGGSDGCKIPMKIDSLTGLG-----VVKVECGSQFSVAL 4211
Query: 260 TDDGYKLWSWGRGRSGVLGTG 280
T G +++WG+G LG G
Sbjct: 4212 TKSG-AVYTWGKGDYHRLGHG 4231
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 21/149 (14%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQV-----KELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+++G G+ G+LGHG T P+ + K+ ++V V V CG +++ +++ G++++
Sbjct: 508 FSWGCGDGGRLGHGDTTYLEEPKMIGTFNGKQAGKHV--VHVACGSTYSAAITADGELYT 565
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDD 262
WG L + D +P++++ K V VACG+ A T+ VT++
Sbjct: 566 WGRGN------YGRLGHGSSEDQTTPMVVTAF-----KGLKVVDVACGSGDAQTLAVTEN 614
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G ++WSWG G G LG G + P +V
Sbjct: 615 G-QVWSWGDGDYGKLGRGGSDGCKTPKLV 642
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 92/209 (44%), Gaps = 30/209 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P E P + G T +
Sbjct: 3954 YGWGHNHRGQLGGIEGAKVKVPTSTEALATLRPVQLI----GGEQTLFAV-------TAD 4002
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T+S P ++ + Q+V++ V+V+ G H +SS G+V+S
Sbjct: 4003 GKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIRKVAVNSGGKHCLALSSEGEVYS 4061
Query: 205 WG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG E G LG + R +++ + + V +A G AH+ +T
Sbjct: 4062 WGEAEDGKLGHGNRSPCDRPRVIESLRGVEV-------------VDIAAGGAHSACITAS 4108
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G +L++WG+GR G LG G + D P +V
Sbjct: 4109 G-ELFTWGKGRYGRLGHGDSEDQLKPKLV 4136
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
H +SS G+V+SWG G G + T E I NG K V VAC
Sbjct: 497 HYLALSSNGEVFSWGCGDG-GRLGHGDTTYLEEPKMIGTF----NGKQAGKHV--VHVAC 549
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ ++ +T DG +L++WGRG G LG G + D P +V
Sbjct: 550 GSTYSAAITADG-ELYTWGRGNYGRLGHGSSEDQTTPMVV 588
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G + LA+ + G ++ WG+ D +G + + P+ V G + +V
Sbjct: 3255 KIVHVAVGALHCLAVTDTGQVYAWGD---NDHGQQGNGTTTVNRKPTLVQGLEGQKITRV 3311
Query: 63 ACGSEHVVA 71
ACGS H VA
Sbjct: 3312 ACGSSHSVA 3320
>gi|195999218|ref|XP_002109477.1| hypothetical protein TRIADDRAFT_21647 [Trichoplax adhaerens]
gi|190587601|gb|EDV27643.1| hypothetical protein TRIADDRAFT_21647, partial [Trichoplax
adhaerens]
Length = 330
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 121/263 (46%), Gaps = 37/263 (14%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80
G ++ WG L G +L S F P + F V+ ++C H A+ S T
Sbjct: 52 GKVYSWG---LGKYGILGQGNLRSRFAPLKIASFKSSNVIDISCHELHAAAVTSVTNTGS 108
Query: 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKR 140
YS+G N+N QLG+GD E P+++ N ++ + +V CG +H+A L+ +
Sbjct: 109 -----VYSFGDNSNSQLGVGDTEPYAEPQLVTVLNDEN---IIKVACGKYHSAALSAKGN 160
Query: 141 PNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAG 200
+ +GLG++GQLG G + P + + ++ V CG HT +++ G
Sbjct: 161 --------LFLWGLGDDGQLGLGNYNLSTEPTILHIGEKKAKVMDVACGDLHTCILTVGG 212
Query: 201 DVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP---VQVACGAAHTV 257
V+++G N G +P + + P+ F V V+CG+ H+
Sbjct: 213 LVYAFG--------------SNIYGQIAAPSMNKFHLPYRISFNTSKRFVSVSCGSFHSA 258
Query: 258 LVTDDGYKLWSWGRGRSGVLGTG 280
+T++G KL++WG G LG G
Sbjct: 259 AITENG-KLYAWGLETDGRLGLG 280
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 26/198 (13%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y+WG+ NG LG G+ P+++E + + + CG HT + + +
Sbjct: 2 YTWGSGINGALGHGEDIDIPSPRVVEAL---LAYNIKRLACG-LHTVFALNAE------D 51
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA---GDVW 203
+++GLG+ G LG G +S P ++ ++ + C H + V+S G V+
Sbjct: 52 GKVYSWGLGKYGILGQGNLRSRFAPLKIASFKS-SNVIDISCHELHAAAVTSVTNTGSVY 110
Query: 204 SWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
S+G N+ L + P L++ ++ ++VACG H+ ++ G
Sbjct: 111 SFGDNS------NSQLGVGDTEPYAEPQLVTVLND-----ENIIKVACGKYHSAALSAKG 159
Query: 264 YKLWSWGRGRSGVLGTGK 281
L+ WG G G LG G
Sbjct: 160 -NLFLWGLGDDGQLGLGN 176
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+CGS H A+ G+ Y +WG +G+LGLGD + R P +E F
Sbjct: 248 VSVSCGSFHSAAITENGKLY--------AWGLETDGRLGLGDCKQRSSPTEVEGFRDKK- 298
Query: 120 WAVYEVTCGSFHTALL 135
+ + CGS HTA L
Sbjct: 299 --IGRIACGSKHTAAL 312
>gi|384249755|gb|EIE23236.1| UVB-resistance 8 [Coccomyxa subellipsoidea C-169]
Length = 434
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 128/290 (44%), Gaps = 43/290 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS-SFTPSPVWDFHGHTVVK 61
I V G +LA+ + G L+ +G + + + G S + P PV G V
Sbjct: 120 NIVKVACGDTHTLAVTDTGELFSFGR----NQNGQLGLGTTSDAILPQPVESLRGQEVTS 175
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ACG EH +A SAG+ + +WG G LG+G E R P +
Sbjct: 176 IACGGEHSLAATSAGDVF--------AWGWGRYGNLGVGPPEDRHLPSQVHGLEGVK--- 224
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V V CG H+ +TFG + GQLGHG LVP+ V+ L +
Sbjct: 225 VTSVACGWRHSIAADE--------TGAVYTFGWSKYGQLGHGDCIDQLVPKAVESL-KDS 275
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPH 239
+V + G HTS +G ++SWG K LG+ N D+ +P+ + G
Sbjct: 276 RIVLIAGGWRHTSAADDSGKLYSWGWNKFGQLGIGSNT--------DSNAPVPVQG---- 323
Query: 240 GPKFQDPVQV-ACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
PV++ +CG HT VT+ G ++SWGRG +G LG + D AP
Sbjct: 324 --LNTSPVKLLSCGWRHTFAVTEAG-DVFSWGRGVNGQLGHNEPKDTNAP 370
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V V+CGS H +AL+S G + SWG +GQLG GD E R +P+ I Q S
Sbjct: 16 VTSVSCGSSHSLALLSNG--------IALSWGRGEDGQLGHGDAEERKKPRAIFHLMQAS 67
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
AV + + AL R +++G G+ G+LGHG +P+ ++ L
Sbjct: 68 CSAV--CSGAEYSVALSQPRNE--------VYSWGWGDFGRLGHGDCNDVFIPQPIRALA 117
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+V V CG HT V+ G+++S+G + N L DAI P +
Sbjct: 118 GR-NIVKVACGDTHTLAVTDTGELFSFGRNQ------NGQLGLGTTSDAILPQPV----- 165
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ Q+ +ACG H++ T G +++WG GR G LG G D P+ V
Sbjct: 166 ESLRGQEVTSIACGGEHSLAATSAG-DVFAWGWGRYGNLGVGPPEDRHLPSQV 217
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 124/291 (42%), Gaps = 38/291 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ SV G SLA+ + G WG + G P ++ + V
Sbjct: 15 RVTSVSCGSSHSLALLSNGIALSWGRG---EDGQLGHGDAEERKKPRAIFHLMQASCSAV 71
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
G+E+ VAL YSWG + G+LG GD P+ I + +
Sbjct: 72 CSGAEYSVALSQPRNE-------VYSWGWGDFGRLGHGDCNDVFIPQPIRALAGRN---I 121
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CG HT +T D E ++FG +NGQLG GTT A++P+ V+ L +
Sbjct: 122 VKVACGDTHTLAVT------DTGE--LFSFGRNQNGQLGLGTTSDAILPQPVESL-RGQE 172
Query: 183 LVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ S+ CG H+ +SAGDV W WG LG+ P D P + HG
Sbjct: 173 VTSIACGGEHSLAATSAGDVFAWGWGRYGNLGVGPPE--------DRHLPSQV-----HG 219
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ VACG H++ + G ++++G + G LG G ID P V
Sbjct: 220 LEGVKVTSVACGWRHSIAADETG-AVYTFGWSKYGQLGHGDCIDQLVPKAV 269
>gi|444915471|ref|ZP_21235603.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
gi|444713402|gb|ELW54302.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
Length = 752
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 122/289 (42%), Gaps = 42/289 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S +V AG SL +++ G LW WG+ G +L TP V G VV
Sbjct: 349 VSGAVAVAAGYRHSLVVNSDGTLWAWGSNL---DGQRGDGTLTRYPTPGRVPGLSG--VV 403
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G HV+AL+S D ++WG N +GQLG G R SR P+ + +
Sbjct: 404 SVAAGGGHVLALLS--------DGTVWAWGDNASGQLGDGTRHSRWVPRQVPELS----- 450
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V GS + + + + W++G GQLGHG+T ++ VP V+EL +
Sbjct: 451 GVVAVAAGSSFSLAVRY--------DGSVWSWGDNAYGQLGHGSTDASSVPLHVRELSE- 501
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP-H 239
+V+V G H V + G VW WG + GD I P
Sbjct: 502 --VVAVAAGSMHALAVRADGTVWGWGFND-----------YGQLGDGFEGISARRYSPVQ 548
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
P V VA H++ V DG +W+WG LG G T P
Sbjct: 549 VPGLSGMVSVAADFGHSLAVRADG-TVWAWGNNTDSELGDGTTTRRLVP 596
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 121/293 (41%), Gaps = 45/293 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + SV AG SLA+ + G++W WG S G + P V G VV
Sbjct: 147 LSGVVSVVAGDTHSLAVRSDGSVWAWGRNT---SGQLGDGTRDDRAVPVQVTGLSG--VV 201
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H +A+ S G ++WG N +GQLG + P +E +
Sbjct: 202 SVAAGGNHSLAVRSDGS--------VWAWGNNASGQLGGAPEAAYPVPWRVEDVS----- 248
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ--SALVPEQVKELP 178
V V G +H+ + + + W +G GQLG G + S +P+QV P
Sbjct: 249 GVVAVAAGQYHSLAVRY--------DGTVWAWGDNLYGQLGDGKLEGNSRWLPKQV---P 297
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+V+V G +H+ VV S G VW+WG L A SP+ + G
Sbjct: 298 GLGGVVAVSAGFYHSLVVRSDGTVWAWGNNA------YGQLGGGSRAHAASPVQVLG--- 348
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA G H+++V DG LW+WG G G G + P V
Sbjct: 349 ----VSGAVAVAAGYRHSLVVNSDG-TLWAWGSNLDGQRGDGTLTRYPTPGRV 396
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 83/206 (40%), Gaps = 30/206 (14%)
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPN 142
D ++ G N +GQLG G SR P ++ + V V G H+ L +
Sbjct: 66 DGTVWTTGGNGHGQLGDGTTLSRRTPVQVQGLS-----GVAAVAAGHGHSLALRY----- 115
Query: 143 DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV 202
+ W +G GQLG T + VP QV L V +V+ D H+ V S G V
Sbjct: 116 ---DGTVWAWGNNAYGQLGDDTRDNRTVPVQVTGLSGVVSVVAGDT---HSLAVRSDGSV 169
Query: 203 WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
W+WG + L D P+ ++G V VA G H++ V D
Sbjct: 170 WAWGRNT------SGQLGDGTRDDRAVPVQVTG-------LSGVVSVAAGGNHSLAVRSD 216
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAP 288
G +W+WG SG LG + P
Sbjct: 217 G-SVWAWGNNASGQLGGAPEAAYPVP 241
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 129/328 (39%), Gaps = 64/328 (19%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + SV AGG LA+ + G +W WG+ S G + S + P V + G VV
Sbjct: 399 LSGVVSVAAGGGHVLALLSDGTVWAWGDNA---SGQLGDGTRHSRWVPRQVPELSG--VV 453
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA GS +A+ Y G +SWG N GQLG G ++ P + ++
Sbjct: 454 AVAAGSSFSLAV-----RYDGS---VWSWGDNAYGQLGHGSTDASSVPLHVRELSE---- 501
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V GS H L R + W +G + GQLG G + ++P
Sbjct: 502 -VVAVAAGSMHA--LAVRA------DGTVWGWGFNDYGQLGDGFEGISARRYSPVQVPGL 552
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWG----MEKGLG-----LCP------------NASL 219
+VSV H+ V + G VW+WG E G G L P +A
Sbjct: 553 SGMVSVAADFGHSLAVRADGTVWAWGNNTDSELGDGTTTRRLVPLRVNAPGTVALLSAGY 612
Query: 220 TRNEAGDAISPILISGNGPHGP-------------KFQDPVQ---VACGAAHTVLVTDDG 263
+ A A + G G + Q PV+ +A G +H++ V DG
Sbjct: 613 NYSMAMRADGSLWAWGTNFAGQLGDGSTTSRAVPVRVQGPVRASTLAAGQSHSMAVGSDG 672
Query: 264 YKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ LW+WG G LG G P V
Sbjct: 673 F-LWAWGFNFEGQLGDGTLTHHALPVRV 699
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 118/280 (42%), Gaps = 42/280 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+S++ +V AG M +LA+ G +W WG D G GF +S+ SPV +
Sbjct: 499 LSEVVAVAAGSMHALAVRADGTVWGWG---FNDYGQLGDGFEGISARRYSPVQVPGLSGM 555
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V VA H +A+ + D ++WG N + +LG G RL P ++P
Sbjct: 556 VSVAADFGHSLAVRA--------DGTVWAWGNNTDSELGDGTTTRRLVP-----LRVNAP 602
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V ++ G ++ + + W +G GQLG G+T S VP +V+
Sbjct: 603 GTVALLSAGYNYSMAM--------RADGSLWAWGTNFAGQLGDGSTTSRAVPVRVQGP-- 652
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
V ++ G H+ V S G +W+WG G + +LT + P+ +
Sbjct: 653 -VRASTLAAGQSHSMAVGSDGFLWAWGFNF-EGQLGDGTLTHHAL-----PVRV------ 699
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
P V V ++ V DG LW+WG G LGT
Sbjct: 700 -PGMSGVVAVDVTLNLSLAVRSDG-SLWAWGNNDVGQLGT 737
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 62/146 (42%), Gaps = 17/146 (11%)
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSW 205
+ WT G +GQLG GTT S P QV+ L + +V G H+ + G VW+W
Sbjct: 66 DGTVWTTGGNGHGQLGDGTTLSRRTPVQVQGLSG---VAAVAAGHGHSLALRYDGTVWAW 122
Query: 206 GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
G L + + P+ ++G V V G H++ V DG
Sbjct: 123 GNNA------YGQLGDDTRDNRTVPVQVTG-------LSGVVSVVAGDTHSLAVRSDG-S 168
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIV 291
+W+WGR SG LG G D P V
Sbjct: 169 VWAWGRNTSGQLGDGTRDDRAVPVQV 194
>gi|444919546|ref|ZP_21239558.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
gi|444708349|gb|ELW49424.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
Length = 494
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 131/291 (45%), Gaps = 44/291 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S++ +V AG SLA+ + G +W WG+ S G + +S TP V G V+
Sbjct: 47 LSEVVAVDAGSSHSLAVRSDGTVWAWGSNA---SGQLGDETTISRSTPVQVLGLSG--VL 101
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA GS HV+AL Y G ++WG+N++GQ G G +R P + +
Sbjct: 102 FVAAGSSHVLAL-----RYDGT---VWAWGSNSSGQRGDGTTNNRALPVQAQGLS----- 148
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V G H+ L R + W +G +GQLG GTT + P QV+ L
Sbjct: 149 GVMAVAAGDNHS--LAVRS------DGSAWAWGSNASGQLGEGTTSNRPEPVQVQGLSG- 199
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V+V G H+ V S G VW+WG + L D + P+ + G
Sbjct: 200 --VVAVAAGSAHSLAVRSDGTVWAWGANA------SGQLGDGTTTDRLVPVQVQG----- 246
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA G H++ V +DG +W WGR S LG G ++ PA V
Sbjct: 247 --LSGVVAVAAGHHHSLAVRNDG-TVWGWGRNDSNQLGKG-SMRLLVPAQV 293
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 123/284 (43%), Gaps = 46/284 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + +V AG SLA+ N G +W WG + S + G + P+ V VV
Sbjct: 247 LSGVVAVAAGHHHSLAVRNDGTVWGWGR----NDSNQLGKGSMRLLVPAQVQGLS--AVV 300
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H +A+ G D ++ G+NNNGQLG G RL P + +
Sbjct: 301 AVAAGDTHSLAV--------GSDGTVWAVGSNNNGQLGDGTTTYRLVPVPVLS------- 345
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V +H+ L R + W +G GQLG GTT + LVP QV L +
Sbjct: 346 GVVSVAANDYHS--LAVRS------DGTVWAWGYNSTGQLGDGTTTTRLVPVQVSGLSE- 396
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+VSV G +H+ V S G W WG G + S T P+ +
Sbjct: 397 --VVSVVAGGYHSLAVRSDGSAWDWG-SNAYGQLGDGSTTYLPV-----PVRVQ------ 442
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
+ VA G++H++ + DG +W+WG G LG G ++
Sbjct: 443 -QLSGVGAVASGSSHSLALRSDG-TVWTWGYNSFGQLGNGPPLN 484
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 125/290 (43%), Gaps = 51/290 (17%)
Query: 7 VKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHT-VVK 61
+ AG SLA+ + G +W WG + L D +T +++P PV G + VV
Sbjct: 1 MAAGSSHSLALRSDGTVWAWGANSSGQLGDGTT--------TYSPVPVPVQVQGLSEVVA 52
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
V GS H +A+ S D ++WG+N +GQLG SR P + +
Sbjct: 53 VDAGSSHSLAVRS--------DGTVWAWGSNASGQLGDETTISRSTPVQVLGLS-----G 99
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V V GS H L + + W +G +GQ G GTT + +P Q + L
Sbjct: 100 VLFVAAGSSHVLALRY--------DGTVWAWGSNSSGQRGDGTTNNRALPVQAQGLSG-- 149
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+++V G H+ V S G W+WG L + R E P+ + G
Sbjct: 150 -VMAVAAGDNHSLAVRSDGSAWAWGSNASGQLGEGTTSNRPE------PVQVQG------ 196
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA G+AH++ V DG +W+WG SG LG G T D P V
Sbjct: 197 -LSGVVAVAAGSAHSLAVRSDG-TVWAWGANASGQLGDGTTTDRLVPVQV 244
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 127/291 (43%), Gaps = 46/291 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + +V AG SLA+ + G+ W WG+ ++S + G S+ P PV VV
Sbjct: 147 LSGVMAVAAGDNHSLAVRSDGSAWAWGS----NASGQLGEGTTSNR-PEPVQVQGLSGVV 201
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA GS H +A+ S D ++WGAN +GQLG G RL P ++ +
Sbjct: 202 AVAAGSAHSLAVRS--------DGTVWAWGANASGQLGDGTTTDRLVPVQVQGLS----- 248
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V G H+ + + + W +G ++ QLG G+ + LVP QV+ L
Sbjct: 249 GVVAVAAGHHHSLAVRN--------DGTVWGWGRNDSNQLGKGSMR-LLVPAQVQGLSA- 298
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V+V G H+ V S G VW+ +G N L + P+
Sbjct: 299 --VVAVAAGDTHSLAVGSDGTVWA------VGSNNNGQLGDGTTTYRLVPV--------- 341
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P V VA H++ V DG +W+WG +G LG G T P V
Sbjct: 342 PVLSGVVSVAANDYHSLAVRSDG-TVWAWGYNSTGQLGDGTTTTRLVPVQV 391
>gi|442318560|ref|YP_007358581.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
gi|441486202|gb|AGC42897.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
Length = 866
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 133/317 (41%), Gaps = 49/317 (15%)
Query: 3 QIC-SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
Q C SV G +L + + G+LW WGN P S G P+ V + VV
Sbjct: 145 QFCPSVSPGVYHTLEVKSGGSLWAWGNNP---SGQLGNGQRTQRNAPTRVRGLN--QVVS 199
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ G+EH VA+ ED ++WG+N GQLG G R P + +
Sbjct: 200 ASAGAEHSVAVT--------EDGSVWTWGSNAYGQLGDGTNTLRAVPVQVPGMSD----V 247
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V GS AL + WT+G+ +G+LG GTT +L+P QV P
Sbjct: 248 VAVAAAGSRTVAL---------KADGTVWTWGINSSGELGDGTTTHSLLPIQV---PNLS 295
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ ++ GL+HT V G WSWG L +L R + P+L++G
Sbjct: 296 GVTNIAAGLWHTLAVKKDGSAWSWGNNAYGQLGDGTTLNR------LRPVLVAG------ 343
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFK 301
++ G HTV + DG W WG +G LG G T + P V LT+
Sbjct: 344 -LTGVRALSGGVVHTVALKWDG-TAWGWGYNSAGQLGNGTTTNSSIPVQV--AALTQAV- 398
Query: 302 QDELNTGGLDDEIKTKD 318
E++ GG + +D
Sbjct: 399 --EIDAGGYHTLARRQD 413
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 125/292 (42%), Gaps = 43/292 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
MS + V AG ++A+ G + WG G + + TP V + G V
Sbjct: 548 MSGVIDVAAGVNHTVALSADGTVAAWGYNAY---GQLGNGTTANQLTPQSVPELDG--VT 602
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++ GS H VAL + D ++WG+N GQLG G R P + +
Sbjct: 603 AISAGSTHTVALKA--------DGTVWAWGSNLYGQLGDGTFTHRSSPVQVPSLEN---- 650
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G FHT + + W +G G GQLG GTT + VP QV L
Sbjct: 651 -VVSIAAGHFHTVAVKG--------DGTLWVWGYGPQGQLGLGTTTNQSVPVQVSGLG-- 699
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ V++ G +HT + + G VW+WG G +A++ + SP+L+
Sbjct: 700 -HAVAIAAGGYHTVALLANGQVWTWGYNSS-GQLGDATIIQR-----YSPVLV------- 745
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
P + + +A G T ++ DG +W++G +G LG G T +P L
Sbjct: 746 PGLTNVIALAAGGYTTAVLKRDG-TVWAFGYNPNGQLGDGTTTSRSSPTATL 796
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 124/298 (41%), Gaps = 50/298 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
MS + +V A G ++A+ G +W WG + S G + S P V + G V
Sbjct: 244 MSDVVAVAAAGSRTVALKADGTVWTWG---INSSGELGDGTTTHSLLPIQVPNLSG--VT 298
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +A+ +D +SWG N GQLG G +RLRP ++
Sbjct: 299 NIAAGLWHTLAVK--------KDGSAWSWGNNAYGQLGDGTTLNRLRPVLVAGLT----- 345
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++ G HT L + W +G GQLG+GTT ++ +P QV L Q
Sbjct: 346 GVRALSGGVVHTVAL--------KWDGTAWGWGYNSAGQLGNGTTTNSSIPVQVAALTQ- 396
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI--SGNGP 238
V +D G +HT G +++WG + G + T + P+ + SG
Sbjct: 397 --AVEIDAGGYHTLARRQDGTLYAWG-DNFYGALGTGNTTSSSV-----PVQVPLSGVRW 448
Query: 239 HGPKFQDPV----QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G + V +V HT L++WG +G LG G T +P V+
Sbjct: 449 FGAGYYYSVAERKKVNMAQVHT---------LFAWGHNTNGELGDGTTTQRTSPTAVV 497
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 120/298 (40%), Gaps = 57/298 (19%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++Q+ S AG S+A+ G++W WG+ L D + ++ PV
Sbjct: 194 LNQVVSASAGAEHSVAVTEDGSVWTWGSNAYGQLGDGT--------NTLRAVPVQVPGMS 245
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV VA VAL + D ++WG N++G+LG G L P + +
Sbjct: 246 DVVAVAAAGSRTVALKA--------DGTVWTWGINSSGELGDGTTTHSLLPIQVPNLS-- 295
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + G +HT L +K + W++G GQLG GTT + L P V L
Sbjct: 296 ---GVTNIAAGLWHT--LAVKK------DGSAWSWGNNAYGQLGDGTTLNRLRPVLVAGL 344
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILI 233
+ ++ G+ HT + G W WG G G N+S+ P+ +
Sbjct: 345 TG---VRALSGGVVHTVALKWDGTAWGWGYNSAGQLGNGTTTNSSI----------PVQV 391
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ V++ G HT+ DG L++WG G LGTG T P V
Sbjct: 392 A-------ALTQAVEIDAGGYHTLARRQDG-TLYAWGDNFYGALGTGNTTSSSVPVQV 441
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 118/347 (34%), Gaps = 101/347 (29%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV------WDF 54
++Q + AGG +LA G L+ WG+ T + SS P V W
Sbjct: 394 LTQAVEIDAGGYHTLARRQDGTLYAWGDNFYGALGTG---NTTSSSVPVQVPLSGVRW-- 448
Query: 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
G+ + ++ + + ++WG N NG+LG G R P +
Sbjct: 449 ---------FGAGYYYSVAERKKVNMAQVHTLFAWGHNTNGELGDGTTTQRTSPTAVVVS 499
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG----------- 163
+ + GS H+ L WT+G GQLG+G
Sbjct: 500 ------GIVKTAGGSAHSVALG--------AGGAVWTWGYNAYGQLGNGTTTQVVTPTQL 545
Query: 164 ---------------------------------------TTQSALVPEQVKELPQYVYLV 184
TT + L P+ V EL +
Sbjct: 546 PGMSGVIDVAAGVNHTVALSADGTVAAWGYNAYGQLGNGTTANQLTPQSVPELDG---VT 602
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
++ G HT + + G VW+WG G + + T SP+ + P +
Sbjct: 603 AISAGSTHTVALKADGTVWAWGSNL-YGQLGDGTFTHRS-----SPVQV-------PSLE 649
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ V +A G HTV V DG LW WG G G LG G T + P V
Sbjct: 650 NVVSIAAGHFHTVAVKGDG-TLWVWGYGPQGQLGLGTTTNQSVPVQV 695
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 81/220 (36%), Gaps = 61/220 (27%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPS-PVWDFHGHTV 59
+ + S+ AG ++A+ G LW+WG P +G L ++ S PV
Sbjct: 648 LENVVSIAAGHFHTVAVKGDGTLWVWGYGP------QGQLGLGTTTNQSVPVQVSGLGHA 701
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +A G H VAL++ G+ ++WG N++GQLG R P ++
Sbjct: 702 VAIAAGGYHTVALLANGQ--------VWTWGYNSSGQLGDATIIQRYSPVLVPGLTN--- 750
Query: 120 WAVYEVTCGSFHTALL----------------------THRKRP---------------N 142
V + G + TA+L T R P N
Sbjct: 751 --VIALAAGGYTTAVLKRDGTVWAFGYNPNGQLGDGTTTSRSSPTATLMNSVVDLSSGVN 808
Query: 143 DM--LESMCWTFGLGEN--GQLGHGTTQSALVPEQVKELP 178
M L W G N GQLG GTT P QV LP
Sbjct: 809 HMMGLRKDAWVRACGYNSAGQLGDGTTTQRPTPVQVTNLP 848
>gi|326668760|ref|XP_686789.5| PREDICTED: e3 ubiquitin-protein ligase HERC2, partial [Danio rerio]
Length = 3645
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 1860 AVHSGGRHAMALTVDGKVFSWGEG---DDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 1916
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE YSWG G+LG GD ++LRPK+++ V +V
Sbjct: 1917 SSHSAAITSSGE--------LYSWGLGEYGRLGHGDNTTQLRPKLVKVLLGHR---VVQV 1965
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E M +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 1966 ACGSRDAQTLALTD------EGMVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 2018
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + P ++ G G K
Sbjct: 2019 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRK------PQMV--EGLRGKKI-- 2068
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VT+ G ++++WG G G G T P +V
Sbjct: 2069 -VHVAVGALHCLAVTETG-QVFAWGDNDHGQQGNGTTTVNRKPTLV 2112
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 130/292 (44%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G L+ WG + G + P + G VV +A G
Sbjct: 2854 AVNSGGKHCLALSSEGELYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGVEVVDIAAG 2910
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + ++GE Y+WG G+LG GD E +L+PK++E V +V
Sbjct: 2911 GAHSACITASGE--------LYTWGKGRYGRLGHGDSEDQLKPKLVEALQGHR---VIDV 2959
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + M W++G G+ G+LG G + VP ++ L + +
Sbjct: 2960 ACGSGDAQTLCLTD--------DDMVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 3010
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 3011 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 3058
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 3059 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 3106
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 112/255 (43%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S AI ++G L+ WG L + G + P V GH VV+V
Sbjct: 1909 RIRDIACGSSHSAAITSSGELYSWG---LGEYGRLGHGDNTTQLRPKLVKVLLGHRVVQV 1965
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 1966 ACGSRDAQTLALTDEG------MVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 2016
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHGT P+ V+ L +
Sbjct: 2017 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGTDVHVRKPQMVEGL-RGKK 2067
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ G V++WG + G N + T N P L+ G +
Sbjct: 2068 IVHVAVGALHCLAVTETGQVFAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 2116
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 2117 GQKITRVACGSSHSV 2131
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 109/257 (42%), Gaps = 36/257 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + AGG S I +G L+ WG G P V GH V+ V
Sbjct: 2903 EVVDIAAGGAHSACITASGELYTWGKG---RYGRLGHGDSEDQLKPKLVEALQGHRVIDV 2959
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L +D + +SWG + G+LG G + P I++ + V
Sbjct: 2960 ACGSGDAQTLCLT------DDDMVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TGLGV 3010
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 3011 VKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-QGKK 3061
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++++ G H + G+V++WG E LG ++ R P L++ G
Sbjct: 3062 VIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL--QG 3111
Query: 241 PKFQDPVQVACGAAHTV 257
K +VACG+AHT+
Sbjct: 3112 KKIN---RVACGSAHTL 3125
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 122/262 (46%), Gaps = 38/262 (14%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
+++WG L D GG PS VV+VA GS+ + A+ + G+
Sbjct: 1770 VFVWG---LNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTAEGKV---- 1822
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPN 142
Y+ G NG+LGLG L I Q S + Y V + H+ R
Sbjct: 1823 ----YACGEATNGRLGLG-----LSSGTIPIPRQISALSNYVVKKVAVHSG---GRHAMA 1870
Query: 143 DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV 202
++ +++G G++G+LGH + + P ++ L + + + CG H++ ++S+G++
Sbjct: 1871 LTVDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEAL-KTKRIRDIACGSSHSAAITSSGEL 1929
Query: 203 WSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVL 258
+SWG+ E G LG N + R P L+ H VQVACG+ A T+
Sbjct: 1930 YSWGLGEYGRLGHGDNTTQLR--------PKLVKVLLGH-----RVVQVACGSRDAQTLA 1976
Query: 259 VTDDGYKLWSWGRGRSGVLGTG 280
+TD+G ++SWG G G LG G
Sbjct: 1977 LTDEGM-VFSWGDGDFGKLGRG 1997
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 118/269 (43%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 2756 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPTEALATLRPVQLIGGEQTLFAVT 2812
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ V V G H
Sbjct: 2813 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIRKV-AVNSGGKHCL 2863
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + V +V + G H+
Sbjct: 2864 ALSS--------EGELYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGVEVVDIAAGGAHS 2914
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ ++++G++++WG + L ++ D + P L+ H + VACG+
Sbjct: 2915 ACITASGELYTWGKGR------YGRLGHGDSEDQLKPKLVEALQGH-----RVIDVACGS 2963
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 2964 GDAQTLCLTDDDM-VWSWGDGDYGKLGRG 2991
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G + LA+ G ++ WG+ D +G + + P+ V G + +V
Sbjct: 2067 KIVHVAVGALHCLAVTETGQVFAWGD---NDHGQQGNGTTTVNRKPTLVQGLEGQKITRV 2123
Query: 63 ACGSEHVVA 71
ACGS H VA
Sbjct: 2124 ACGSSHSVA 2132
>gi|88855032|ref|ZP_01129697.1| hypothetical protein A20C1_04101 [marine actinobacterium PHSC20C1]
gi|88815560|gb|EAR25417.1| hypothetical protein A20C1_04101 [marine actinobacterium PHSC20C1]
Length = 524
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 130/287 (45%), Gaps = 33/287 (11%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
V AG SLA+ + G ++ WG S G S+++S P V G T +V+ G+
Sbjct: 54 VSAGINHSLAMGSDGNIYAWG---YNSSGQLGNNSILNSSVPVLVSTPDGVTFTQVSAGA 110
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
+H +A+ G D Y+WG N +G+LG G P ++ S + +V
Sbjct: 111 DHSLAV--------GSDGNAYAWGRNTDGRLGNGTSTGSSVPLLVSAGAVPSGVTISQVM 162
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK--ELPQYVYLV 184
G FH+ + +++G +GQLG GTT ++ VP +V +P V
Sbjct: 163 AGGFHSLAVGSNGD--------IYSWGYNRSGQLGDGTTLASSVPLKVSAGAVPAGVTFS 214
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
V G H+ + S G ++WG +G G S++R A P L+S P G F
Sbjct: 215 QVSAGDRHSLAIGSNGKTYAWGEARG-GQLGIGSISRTPA-----PALVS--APAGVSF- 265
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
QV+ G H++ V DG K ++WG SG LG T AP +V
Sbjct: 266 --TQVSAGDLHSLAVGSDG-KAYAWGNNDSGQLGNATTTSSLAPVLV 309
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 109/247 (44%), Gaps = 42/247 (17%)
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET-- 113
G +V+ G H +A+ G D Y+WG N++GQLG + P ++ T
Sbjct: 48 GVVFTQVSAGINHSLAM--------GSDGNIYAWGYNSSGQLGNNSILNSSVPVLVSTPD 99
Query: 114 ---FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALV 170
F Q S A + + GS + + +G +G+LG+GT+ + V
Sbjct: 100 GVTFTQVSAGADHSLAVGS----------------DGNAYAWGRNTDGRLGNGTSTGSSV 143
Query: 171 PEQVKE--LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
P V +P V + V G FH+ V S GD++SWG + L +L +
Sbjct: 144 PLLVSAGAVPSGVTISQVMAGGFHSLAVGSNGDIYSWGYNRSGQLGDGTTLASSV----- 198
Query: 229 SPILIS-GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
P+ +S G P G F QV+ G H++ + +G K ++WG R G LG G A
Sbjct: 199 -PLKVSAGAVPAGVTFS---QVSAGDRHSLAIGSNG-KTYAWGEARGGQLGIGSISRTPA 253
Query: 288 PAIVLWP 294
PA+V P
Sbjct: 254 PALVSAP 260
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 132/304 (43%), Gaps = 49/304 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDF---HGH 57
I V AGG SLA+ + G ++ WG + L D +T ++S P V G
Sbjct: 158 ISQVMAGGFHSLAVGSNGDIYSWGYNRSGQLGDGTT------LASSVPLKVSAGAVPAGV 211
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
T +V+ G H +A+ S G+T Y+WG GQLG+G P ++
Sbjct: 212 TFSQVSAGDRHSLAIGSNGKT--------YAWGEARGGQLGIGSISRTPAPALVS----- 258
Query: 118 SPWAV--YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
+P V +V+ G H+ + + + +G ++GQLG+ TT S+L P V
Sbjct: 259 APAGVSFTQVSAGDLHSLAVGSDGK--------AYAWGNNDSGQLGNATTTSSLAPVLVS 310
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
+ + + V G H+ + + G+ ++WG+ N L N + P++++
Sbjct: 311 PMGG-LAVTQVSAGADHSLAIGADGNAYAWGLNV------NGQLGNNTITTSTVPVMVT- 362
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP-AIVLWP 294
P G F ++ G H++ D ++WG G LG G + P AI +P
Sbjct: 363 -APDGVTF---TRIEAGGLHSLTAASD-ENTYTWGANSFGQLGNGTSDGSLVPVAISRFP 417
Query: 295 PLTE 298
+TE
Sbjct: 418 VITE 421
>gi|270001314|gb|EEZ97761.1| hect domain and RLD 2-like protein [Tribolium castaneum]
Length = 3894
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 133/290 (45%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ ++ WG D G + ++ TP + G+ ++ +ACG
Sbjct: 3122 AVNSGGKHCLALSADNDVYSWGE---GDDGKLGHGNRLACETPKLIEALQGYEIIDIACG 3178
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H A+ S G+ Y+WG G+LG GD E +L+PK+IE + V +V
Sbjct: 3179 GAHSAAITSTGQ--------LYTWGKGRYGRLGHGDSEDQLKPKLIEEL---VGYKVIDV 3227
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + VP++++ L + ++
Sbjct: 3228 ACGSGDAQTLCITDDDN------VWSWGDGDYGKLGRGGSDGCKVPKKIESLAG-LGVIK 3280
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + R + A+ G
Sbjct: 3281 VECGSQFSVALTRSGSVYTWG--KGDYHRLGHGTGEHVRRPKKVAAL----------QGK 3328
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V +D+G ++++WG G LG T P +V
Sbjct: 3329 KI---ISIATGSLHCVACSDEG-EVFTWGDNDEGQLGDDTTNAIQRPRLV 3374
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 130/288 (45%), Gaps = 37/288 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG + G + ++ P + + +ACG
Sbjct: 2146 AVHSGGKHAMALTLDGKVFSWGE---GEDGKLGHGNRLNLDKPKMIEALRSKKIRDIACG 2202
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE Y+WG G+LG GD ++L+PK+I++ + +V
Sbjct: 2203 SSHSAAITSSGE--------LYTWGLGEYGRLGHGDNITQLKPKLIKSLVGHR---IVQV 2251
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTF--GLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS L L W F G G+ G+LG G ++ +P ++ L + +
Sbjct: 2252 ACGSRDAQTLA--------LTDEGWVFSWGDGDFGKLGRGGSEGCNIPHNIERL-NALEV 2302
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
V ++CG + ++ G+VW+WG KG L P +I K
Sbjct: 2303 VQIECGAQFSLALTKTGEVWTWG--KG----DYFRLGHGSDQHVRKPTVI-----ESLKD 2351
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + VA GA H + VTD G ++++WG G G G TI PA+V
Sbjct: 2352 KKVIHVAVGALHCLAVTDTG-QVYAWGDNDHGQQGNGTTIVNRKPALV 2398
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 131/294 (44%), Gaps = 52/294 (17%)
Query: 9 AGGMMSLAI-DNAGALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHTVVKVAC 64
AGG SL I + G L+ G T G L S P P+ + + KVA
Sbjct: 2094 AGGSKSLFIVSHEGKLYACG------EGTNGRLGLGHSNNVPYPRPIPFLSQYVIKKVAV 2147
Query: 65 --GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
G +H +AL G+ + SWG +G+LG G+R + +PK+IE +
Sbjct: 2148 HSGGKHAMALTLDGKVF--------SWGEGEDGKLGHGNRLNLDKPKMIEALRSKK---I 2196
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CGS H+A +T +T+GLGE G+LGHG + L P+ +K L +
Sbjct: 2197 RDIACGSSHSAAITSSGE--------LYTWGLGEYGRLGHGDNITQLKPKLIKSLVGH-R 2247
Query: 183 LVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V V CG T ++ G V+SWG + G L R + N PH
Sbjct: 2248 IVQVACGSRDAQTLALTDEGWVFSWG-DGDFG-----KLGRGGSEGC--------NIPHN 2293
Query: 241 PKFQDP---VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + VQ+ CGA ++ +T G ++W+WG+G LG G P ++
Sbjct: 2294 IERLNALEVVQIECGAQFSLALTKTG-EVWTWGKGDYFRLGHGSDQHVRKPTVI 2346
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 109/255 (42%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S AI ++G L+ WG L + G ++ P + GH +V+V
Sbjct: 2195 KIRDIACGSSHSAAITSSGELYTWG---LGEYGRLGHGDNITQLKPKLIKSLVGHRIVQV 2251
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P IE N V
Sbjct: 2252 ACGSRDAQTLALTDEGW------VFSWGDGDFGKLGRGGSEGCNIPHNIERLN---ALEV 2302
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT WT+G G+ +LGHG+ Q P ++ L
Sbjct: 2303 VQIECGAQFSLALTKTGE--------VWTWGKGDYFRLGHGSDQHVRKPTVIESLKDK-K 2353
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
++ V G H V+ G V++WG + G N + N P L+ HG +
Sbjct: 2354 VIHVAVGALHCLAVTDTGQVYAWG-DNDHGQQGNGTTIVNR-----KPALV-----HGLE 2402
Query: 243 FQDPVQVACGAAHTV 257
+VACG++H++
Sbjct: 2403 DVHINRVACGSSHSI 2417
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 116/264 (43%), Gaps = 50/264 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
+I + GG S AI + G L+ WG +G + + P + + G
Sbjct: 3171 EIIDIACGGAHSAAITSTGQLYTWG---------KGRYGRLGHGDSEDQLKPKLIEELVG 3221
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+ V+ VACGS L +D +SWG + G+LG G + PK IE+
Sbjct: 3222 YKVIDVACGSGDAQTLCIT------DDDNVWSWGDGDYGKLGRGGSDGCKVPKKIESL-- 3273
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ V +V CGS + LT +T+G G+ +LGHGT + P++V
Sbjct: 3274 -AGLGVIKVECGSQFSVALTR--------SGSVYTWGKGDYHRLGHGTGEHVRRPKKVAA 3324
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAIS-PILI 233
L Q ++S+ G H S G+V++WG E LG ++ +AI P L+
Sbjct: 3325 L-QGKKIISIATGSLHCVACSDEGEVFTWGDNDEGQLG---------DDTTNAIQRPRLV 3374
Query: 234 SGNGPHGPKFQDPVQVACGAAHTV 257
S G K + VACG+AHT+
Sbjct: 3375 S--ALQGKKITN---VACGSAHTL 3393
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 102/225 (45%), Gaps = 28/225 (12%)
Query: 70 VALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGS 129
VA S GE + WG N+ QLG G + S+++ + F W ++ + GS
Sbjct: 2041 VAQDSTGEPSSTVGCRVFVWGLNDKDQLG-GMKGSKVKLPVQSDF-LSQLWPIH-IAGGS 2097
Query: 130 FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVDC 188
+++H E + G G NG+LG G + + P + L QYV V+V
Sbjct: 2098 KSLFIVSH--------EGKLYACGEGTNGRLGLGHSNNVPYPRPIPFLSQYVIKKVAVHS 2149
Query: 189 GLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 246
G H ++ G V+SWG E G LG +L + + +A+ K +D
Sbjct: 2150 GGKHAMALTLDGKVFSWGEGEDGKLGHGNRLNLDKPKMIEAL----------RSKKIRD- 2198
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ACG++H+ +T G +L++WG G G LG G I P ++
Sbjct: 2199 --IACGSSHSAAITSSG-ELYTWGLGEYGRLGHGDNITQLKPKLI 2240
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 125/306 (40%), Gaps = 45/306 (14%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNC-------------PLPDSSTEGGFSLVSSFTPSPV 51
C ++ M+ L +DN W C PLP + + +S
Sbjct: 2937 CDLELDKMVGL-VDNHKWSWFRKYCHASRVAKSLIHRSPLPANFCQEVRKKLSDTNADGC 2995
Query: 52 WDFHGHTVVKVACGSEHVVALVSAGETYK---GEDLVCYSWGANNNGQLGLGDRESRLR- 107
W+ H + K + ++ L E + G Y WG N+ GQLG G ++++
Sbjct: 2996 WEHESHDIFKKEHDEQLLIWLNRRPEDWTLSWGGSGTIYGWGHNHRGQLG-GIEGAKVKI 3054
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
P E + P + G T + + G G G+LG G T S
Sbjct: 3055 PTPCEALSTLRPVQL----VGGEQTLFAV-------TADGKVYATGYGAGGRLGIGGTDS 3103
Query: 168 ALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
LVP ++ + Q+V++ ++V+ G H +S+ DV+SWG + L
Sbjct: 3104 VLVPTLLESI-QHVFIKKIAVNSGGKHCLALSADNDVYSWGEGD------DGKLGHGNRL 3156
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+P LI + + + +ACG AH+ +T G +L++WG+GR G LG G + D
Sbjct: 3157 ACETPKLIEALQGY-----EIIDIACGGAHSAAITSTG-QLYTWGKGRYGRLGHGDSEDQ 3210
Query: 286 FAPAIV 291
P ++
Sbjct: 3211 LKPKLI 3216
>gi|189241718|ref|XP_968558.2| PREDICTED: similar to hect domain and RLD 2 [Tribolium castaneum]
Length = 4733
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 133/290 (45%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ ++ WG D G + ++ TP + G+ ++ +ACG
Sbjct: 3961 AVNSGGKHCLALSADNDVYSWGE---GDDGKLGHGNRLACETPKLIEALQGYEIIDIACG 4017
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H A+ S G+ Y+WG G+LG GD E +L+PK+IE + V +V
Sbjct: 4018 GAHSAAITSTGQ--------LYTWGKGRYGRLGHGDSEDQLKPKLIEEL---VGYKVIDV 4066
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + VP++++ L + ++
Sbjct: 4067 ACGSGDAQTLCITDDDN------VWSWGDGDYGKLGRGGSDGCKVPKKIESLAG-LGVIK 4119
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + R + A+ G
Sbjct: 4120 VECGSQFSVALTRSGSVYTWG--KGDYHRLGHGTGEHVRRPKKVAAL----------QGK 4167
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V +D+G ++++WG G LG T P +V
Sbjct: 4168 KI---ISIATGSLHCVACSDEG-EVFTWGDNDEGQLGDDTTNAIQRPRLV 4213
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 130/288 (45%), Gaps = 37/288 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG + G + ++ P + + +ACG
Sbjct: 2985 AVHSGGKHAMALTLDGKVFSWGE---GEDGKLGHGNRLNLDKPKMIEALRSKKIRDIACG 3041
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE Y+WG G+LG GD ++L+PK+I++ + +V
Sbjct: 3042 SSHSAAITSSGE--------LYTWGLGEYGRLGHGDNITQLKPKLIKSLVGHR---IVQV 3090
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTF--GLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS L L W F G G+ G+LG G ++ +P ++ L + +
Sbjct: 3091 ACGSRDAQTLA--------LTDEGWVFSWGDGDFGKLGRGGSEGCNIPHNIERL-NALEV 3141
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
V ++CG + ++ G+VW+WG KG L P +I K
Sbjct: 3142 VQIECGAQFSLALTKTGEVWTWG--KG----DYFRLGHGSDQHVRKPTVI-----ESLKD 3190
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + VA GA H + VTD G ++++WG G G G TI PA+V
Sbjct: 3191 KKVIHVAVGALHCLAVTDTG-QVYAWGDNDHGQQGNGTTIVNRKPALV 3237
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 116/264 (43%), Gaps = 36/264 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I V+ GG S AI GAL+ WG + G + TP+ + ++KVA
Sbjct: 569 IIDVECGGTYSAAISANGALYTWGR---GNYGRLGHGTAEDCLTPTMISALSDEHIIKVA 625
Query: 64 CGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
CGS H + + S G+ Y SWG + G+LG G + P++IE
Sbjct: 626 CGSFYAHTLCITSQGKVY--------SWGDGDYGKLGRGGSDGSKLPRLIEKLQN---VK 674
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ +V CG+ + L+ + +T+G GE +LGH T ++ PE V E+ +
Sbjct: 675 IVQVYCGAQFSVALSE--------DGHVYTWGKGEGWKLGHPTEENVRFPEMV-EVLRDR 725
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+V V G+ H ++ G+V+ WG + +C ++ L + P LI
Sbjct: 726 KVVGVSLGVSHVLALTDQGEVYGWGKNENKQICDSSELFVQQ------PRLI-----EAL 774
Query: 242 KFQDPVQVACGAAHTVLVTDDGYK 265
K Q V V CG A + TDD +
Sbjct: 775 KGQKVVGVCCGPAQSFAWTDDNER 798
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 118/250 (47%), Gaps = 40/250 (16%)
Query: 48 PSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P + G ++K+A E H +AL +D YSWG + G+LG GD ++
Sbjct: 504 PQEMTGLSGINMIKIAAHPEGKHYLALT--------KDYEVYSWGNGDGGRLGHGDTSTK 555
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
P +I+ + +V CG ++A ++ N L +T+G G G+LGHGT
Sbjct: 556 EEPTLIQALKGKD---IIDVECGGTYSAAIS----ANGAL----YTWGRGNYGRLGHGTA 604
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLF--HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE 223
+ L P + L +++ V CG F HT ++S G V+SWG + G L R
Sbjct: 605 EDCLTPTMISALSDE-HIIKVACGSFYAHTLCITSQGKVYSWG-DGDYG-----KLGRGG 657
Query: 224 AGDAISPILISGNGPHGPKFQDP--VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+ + P LI K Q+ VQV CGA +V +++DG+ +++WG+G LG
Sbjct: 658 SDGSKLPRLIE-------KLQNVKIVQVYCGAQFSVALSEDGH-VYTWGKGEGWKLGHPT 709
Query: 282 TIDFFAPAIV 291
+ P +V
Sbjct: 710 EENVRFPEMV 719
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 131/294 (44%), Gaps = 52/294 (17%)
Query: 9 AGGMMSLAI-DNAGALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHTVVKVAC 64
AGG SL I + G L+ G T G L S P P+ + + KVA
Sbjct: 2933 AGGSKSLFIVSHEGKLYACG------EGTNGRLGLGHSNNVPYPRPIPFLSQYVIKKVAV 2986
Query: 65 --GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
G +H +AL G+ + SWG +G+LG G+R + +PK+IE +
Sbjct: 2987 HSGGKHAMALTLDGKVF--------SWGEGEDGKLGHGNRLNLDKPKMIEALRSKK---I 3035
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CGS H+A +T +T+GLGE G+LGHG + L P+ +K L +
Sbjct: 3036 RDIACGSSHSAAITSSGE--------LYTWGLGEYGRLGHGDNITQLKPKLIKSLVGH-R 3086
Query: 183 LVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V V CG T ++ G V+SWG + G L R + N PH
Sbjct: 3087 IVQVACGSRDAQTLALTDEGWVFSWG-DGDFG-----KLGRGGSEGC--------NIPHN 3132
Query: 241 PKFQDP---VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + VQ+ CGA ++ +T G ++W+WG+G LG G P ++
Sbjct: 3133 IERLNALEVVQIECGAQFSLALTKTG-EVWTWGKGDYFRLGHGSDQHVRKPTVI 3185
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 109/255 (42%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S AI ++G L+ WG L + G ++ P + GH +V+V
Sbjct: 3034 KIRDIACGSSHSAAITSSGELYTWG---LGEYGRLGHGDNITQLKPKLIKSLVGHRIVQV 3090
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P IE N V
Sbjct: 3091 ACGSRDAQTLALTDEGW------VFSWGDGDFGKLGRGGSEGCNIPHNIERLN---ALEV 3141
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT WT+G G+ +LGHG+ Q P ++ L
Sbjct: 3142 VQIECGAQFSLALTKTGE--------VWTWGKGDYFRLGHGSDQHVRKPTVIESLKDK-K 3192
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
++ V G H V+ G V++WG + G N + N P L+ HG +
Sbjct: 3193 VIHVAVGALHCLAVTDTGQVYAWG-DNDHGQQGNGTTIVNR-----KPALV-----HGLE 3241
Query: 243 FQDPVQVACGAAHTV 257
+VACG++H++
Sbjct: 3242 DVHINRVACGSSHSI 3256
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 113/258 (43%), Gaps = 38/258 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + GG S AI + G L+ WG G P + + G+ V+ V
Sbjct: 4010 EIIDIACGGAHSAAITSTGQLYTWGK---GRYGRLGHGDSEDQLKPKLIEELVGYKVIDV 4066
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L +D +SWG + G+LG G + PK IE+ + V
Sbjct: 4067 ACGSGDAQTLCIT------DDDNVWSWGDGDYGKLGRGGSDGCKVPKKIESL---AGLGV 4117
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CGS + LT +T+G G+ +LGHGT + P++V L Q
Sbjct: 4118 IKVECGSQFSVALTR--------SGSVYTWGKGDYHRLGHGTGEHVRRPKKVAAL-QGKK 4168
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAIS-PILISGNGPH 239
++S+ G H S G+V++WG E LG ++ +AI P L+S
Sbjct: 4169 IISIATGSLHCVACSDEGEVFTWGDNDEGQLG---------DDTTNAIQRPRLVS--ALQ 4217
Query: 240 GPKFQDPVQVACGAAHTV 257
G K + VACG+AHT+
Sbjct: 4218 GKKITN---VACGSAHTL 4232
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 125/306 (40%), Gaps = 45/306 (14%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNC-------------PLPDSSTEGGFSLVSSFTPSPV 51
C ++ M+ L +DN W C PLP + + +S
Sbjct: 3776 CDLELDKMVGL-VDNHKWSWFRKYCHASRVAKSLIHRSPLPANFCQEVRKKLSDTNADGC 3834
Query: 52 WDFHGHTVVKVACGSEHVVALVSAGETYK---GEDLVCYSWGANNNGQLGLGDRESRLR- 107
W+ H + K + ++ L E + G Y WG N+ GQLG G ++++
Sbjct: 3835 WEHESHDIFKKEHDEQLLIWLNRRPEDWTLSWGGSGTIYGWGHNHRGQLG-GIEGAKVKI 3893
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
P E + P + G T + + G G G+LG G T S
Sbjct: 3894 PTPCEALSTLRPVQL----VGGEQTLFAV-------TADGKVYATGYGAGGRLGIGGTDS 3942
Query: 168 ALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
LVP ++ + Q+V++ ++V+ G H +S+ DV+SWG + L
Sbjct: 3943 VLVPTLLESI-QHVFIKKIAVNSGGKHCLALSADNDVYSWGEGD------DGKLGHGNRL 3995
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+P LI + + + +ACG AH+ +T G +L++WG+GR G LG G + D
Sbjct: 3996 ACETPKLIEALQGY-----EIIDIACGGAHSAAITSTG-QLYTWGKGRYGRLGHGDSEDQ 4049
Query: 286 FAPAIV 291
P ++
Sbjct: 4050 LKPKLI 4055
>gi|401396776|ref|XP_003879904.1| hect E3 ubiquitin ligase, related [Neospora caninum Liverpool]
gi|325114312|emb|CBZ49869.1| hect E3 ubiquitin ligase, related [Neospora caninum Liverpool]
Length = 1080
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 129/304 (42%), Gaps = 72/304 (23%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL---VSSFTPSPVWDFHGHTVVKV 62
SV AGGM + +G L+MWG ++EG + P V G V V
Sbjct: 115 SVAAGGMQMAVVSQSGELYMWG------CNSEGQLGTGDRRDASVPRVVKALQGKIVKVV 168
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL----------------------G 100
AC EH V + +D Y+WG NG+LGL G
Sbjct: 169 ACAQEHTVCCL--------DDGSAYAWGCALNGRLGLHGLSIPSSAGLGVSAPPGAPTKG 220
Query: 101 DRESRL-------RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFG 153
R L P+++E+ + + +V CG +HTA L ++ L +T G
Sbjct: 221 ARTEPLASACLVCTPRVLESLCG---YFITDVACGIYHTAFLGVYEQHKTSL----FTCG 273
Query: 154 LGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK---- 209
LG NG+LGHG + +P V L + + + ++ CG HT+ V+S G ++ WG
Sbjct: 274 LGLNGRLGHGDEEDRHLPTPVHAL-ENLNITAIACGAHHTACVTSGGTLYMWGGAAFGKL 332
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
GLG + L G + + + V VA G+ H+ VT DG +L++W
Sbjct: 333 GLGSTRGSQLLPKHVGGPL-------------RNKTVVSVALGSQHSACVTTDG-ELYTW 378
Query: 270 GRGR 273
G+GR
Sbjct: 379 GQGR 382
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 122/285 (42%), Gaps = 43/285 (15%)
Query: 11 GMMSLAIDNAGALWMWG--NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
G+ L+I ++ L + P + TE S TP + G+ + VACG H
Sbjct: 196 GLHGLSIPSSAGLGVSAPPGAPTKGARTEPLASACLVCTPRVLESLCGYFITDVACGIYH 255
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
L Y+ ++ G NG+LG GD E R P + + + CG
Sbjct: 256 TAFL----GVYEQHKTSLFTCGLGLNGRLGHGDEEDRHLPTPVHALEN---LNITAIACG 308
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKELPQYVYLVSVD 187
+ HTA +T + +G G+LG G+T+ S L+P+ V + +VSV
Sbjct: 309 AHHTACVTS--------GGTLYMWGGAAFGKLGLGSTRGSQLLPKHVGGPLRNKTVVSVA 360
Query: 188 CGLFHTSVVSSAGDVWSWGMEKGLGLCPNAS----LTRNEAGDAISPILISGNGPHGPKF 243
G H++ V++ G++++WG + LG L R +A+ + +
Sbjct: 361 LGSQHSACVTTDGELYTWGQGRRLGHEVQGESDEFLPRRV--EALVGLFV---------- 408
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ V CG AHT + ++G +W+WG R +LG G D AP
Sbjct: 409 ---IHVVCGDAHTACIVENG-NVWAWGTSR--ILGHG---DLEAP 444
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 101/269 (37%), Gaps = 57/269 (21%)
Query: 43 VSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ S +P V G VA G + + +GE Y WG N+ GQLG GDR
Sbjct: 97 LESSSPRLVDALKGINSASVAAGGMQMAVVSQSGELYM--------WGCNSEGQLGTGDR 148
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG- 161
P++++ V V C HT + + + +G NG+LG
Sbjct: 149 RDASVPRVVKALQGK---IVKVVACAQEHTVCC--------LDDGSAYAWGCALNGRLGL 197
Query: 162 HGTT--------------------------QSALV--PEQVKELPQYVYLVSVDCGLFHT 193
HG + + LV P ++ L Y ++ V CG++HT
Sbjct: 198 HGLSIPSSAGLGVSAPPGAPTKGARTEPLASACLVCTPRVLESLCGY-FITDVACGIYHT 256
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ + + GLGL N L + D P + H + + +ACGA
Sbjct: 257 AFLGVYEQHKTSLFTCGLGL--NGRLGHGDEEDRHLPTPV-----HALENLNITAIACGA 309
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
HT VT G L+ WG G LG G T
Sbjct: 310 HHTACVTSGG-TLYMWGGAAFGKLGLGST 337
>gi|357613847|gb|EHJ68745.1| hypothetical protein KGM_02265 [Danaus plexippus]
Length = 1039
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 116/267 (43%), Gaps = 42/267 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWG-----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
+ V G ++ + N G L+ WG C L + S + TP + G
Sbjct: 143 VIQVACGSYHTVVLTNNGDLYAWGANSYGQCGLGNRSNKET-------TPQALSSILGIP 195
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ +ACGS H AL +G + WG N++GQLGL DRESR P ++T
Sbjct: 196 IALIACGSNHTFALSQSGAVF--------GWGKNSHGQLGLQDRESRCYPTHLKTLRN-- 245
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V ++CG TA LT L+ +T G GE GQ GHG T+ LVP +V EL
Sbjct: 246 -VKVCHISCGEDFTAFLT--------LDGGVFTCGAGEYGQTGHGNTKDELVPRKVMELM 296
Query: 179 QYVYLVSVDCGLFHTSVVSSAGD---VWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
+ V CG H ++ G+ +G LG CP+ + +P +
Sbjct: 297 GST-VTQVACGRRH--MLCRVGERILACGYGARGQLG-CPHMAFALVPTPVTFTP---ND 349
Query: 236 NGPHGPK-FQDPVQVACGAAHTVLVTD 261
P P+ F PV+V G H+ L+ +
Sbjct: 350 ESPFSPEIFSGPVKVFAGGDHSFLILN 376
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 128/297 (43%), Gaps = 44/297 (14%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW--DFHGHTV 59
S I + AG +L + N G L+ G+ + + G S+ SPV F G T+
Sbjct: 35 SHIQQISAGEFHTLYLSNNGHLYTCGS----NEVGQLGRQTNSADGTSPVLVDTFKGCTL 90
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG--LGDRESRLRPKIIETFNQD 117
+ACG +H +AL G+ +SWG+++ GQLG LG ++ +PKII+T
Sbjct: 91 STIACGLQHSMALDEWGQP--------FSWGSDSMGQLGSNLGSH-AQDKPKIIKTLATK 141
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ V +V CGS+HT +LT+ D+ + +G GQ G G + Q
Sbjct: 142 N---VIQVACGSYHTVVLTNN---GDL-----YAWGANSYGQCGLGNRSNKETTPQALSS 190
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISG 235
+ + + CG HT +S +G V+ WG LGL S + + +
Sbjct: 191 ILGIPIALIACGSNHTFALSQSGAVFGWGKNSHGQLGLQDRESRCYPTHLKTLRNVKV-- 248
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
++CG T +T DG +++ G G G G G T D P V+
Sbjct: 249 -----------CHISCGEDFTAFLTLDG-GVFTCGAGEYGQTGHGNTKDELVPRKVM 293
>gi|350405799|ref|XP_003487554.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Bombus impatiens]
Length = 5118
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 133/290 (45%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG D G + + P + + G +V +ACG
Sbjct: 4350 AVNSGGKHCLALSSEGHVYSWGE---GDDGKLGHGNRLMYDRPKLIEELLGTEIVDIACG 4406
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H A+ SAG Y+WG G+LG GD E +L PK++E QD + V +V
Sbjct: 4407 GHHSAAITSAG--------WLYTWGKGRYGRLGHGDSEDQLTPKLVEAL-QD--YKVIDV 4455
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + +P +++ L + ++
Sbjct: 4456 ACGSGDAQTLCVTDDDN------VWSWGDGDYGKLGRGGSDGCKIPMKIESLAG-LGVIK 4508
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G +++WG KG LG + + R A+ G
Sbjct: 4509 VECGSQFSVALTRSGAIYTWG--KGDYHRLGHGTDDHVRRPRKVAAL----------QGK 4556
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V TD G ++++WG G LG G T P +V
Sbjct: 4557 KI---ISIATGSLHCVACTDKG-EVFTWGDNDEGQLGDGTTSALQRPRLV 4602
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 133/293 (45%), Gaps = 37/293 (12%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
M + +V +GG +LA+ G ++ WG + G + VS P + +
Sbjct: 3340 MIKKVAVHSGGKHALALTQDGKIFSWGE---GEDGKLGHGNSVSLDKPRLIESLKSKRIR 3396
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+ACGS H A+ S+GE Y+WG G+LG GD ++++PK++++
Sbjct: 3397 DIACGSGHSAAITSSGE--------LYTWGLGEYGRLGHGDTATQMKPKLVQSLVGQR-- 3446
Query: 121 AVYEVTCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V +V CGS T LT + +++G G+ G+LG G + P + L
Sbjct: 3447 -VIQVACGSRDAQTMALT--------ADGSVYSWGDGDFGKLGRGGSDGCYTPLLIDRL- 3496
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V ++CG + ++ G+VW+WG KG L P L+ G
Sbjct: 3497 NGLGVVQIECGAQFSLALTKYGEVWTWG--KG----DYFRLGHGNDHHVRKPTLV--EGL 3548
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K V VA GA H + VTD G ++++WG G G G TI P++V
Sbjct: 3549 RGKKV---VHVAVGALHCLAVTDTG-QVYAWGDNDHGQQGNGSTIVNKKPSLV 3597
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 127/275 (46%), Gaps = 41/275 (14%)
Query: 22 ALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD--FHGHTVVKVACGSEHVVALVSAGETY 79
A+++WG L D GG L S PV+ + +A GS+ + + G+
Sbjct: 3255 AVYVWG---LNDKDQLGG--LKGSKIKLPVYSEVLSKLKPIHIAGGSKTLFVVSQEGK-- 3307
Query: 80 KGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRK 139
Y+ G NG+LGLGD + PK+I +Q V V G H LT
Sbjct: 3308 ------LYACGEGTNGRLGLGDDSNVCEPKLIPFLSQYMIKKV-AVHSGGKHALALTQ-- 3358
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
+ +++G GE+G+LGHG + S P ++ L + + + CG H++ ++S+
Sbjct: 3359 ------DGKIFSWGEGEDGKLGHGNSVSLDKPRLIESL-KSKRIRDIACGSGHSAAITSS 3411
Query: 200 GDVWSWGM-EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHT 256
G++++WG+ E G L + + P L+ Q +QVACG+ A T
Sbjct: 3412 GELYTWGLGEYG-------RLGHGDTATQMKPKLV-----QSLVGQRVIQVACGSRDAQT 3459
Query: 257 VLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +T DG ++SWG G G LG G + + P ++
Sbjct: 3460 MALTADG-SVYSWGDGDFGKLGRGGSDGCYTPLLI 3493
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 105/256 (41%), Gaps = 32/256 (12%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
++I + GG S AI +AG L+ WG G TP V + V+
Sbjct: 4398 TEIVDIACGGHHSAAITSAGWLYTWGK---GRYGRLGHGDSEDQLTPKLVEALQDYKVID 4454
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VACGS L +D +SWG + G+LG G + P IE+ +
Sbjct: 4455 VACGSGDAQTLCVT------DDDNVWSWGDGDYGKLGRGGSDGCKIPMKIESL---AGLG 4505
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V +V CGS + LT +T+G G+ +LGHGT P +V L Q
Sbjct: 4506 VIKVECGSQFSVALTR--------SGAIYTWGKGDYHRLGHGTDDHVRRPRKVAAL-QGK 4556
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++S+ G H + G+V++WG + GD + L H
Sbjct: 4557 KIISIATGSLHCVACTDKGEVFTWGDND-----------EGQLGDGTTSALQRPRLVHAL 4605
Query: 242 KFQDPVQVACGAAHTV 257
+ + +VACG+AHT+
Sbjct: 4606 QGKKITRVACGSAHTL 4621
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 113/268 (42%), Gaps = 56/268 (20%)
Query: 48 PSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P V+ F V +A S+ H +AL +D YSWG + G+LG GDR
Sbjct: 486 PQRVYGFSEKPVTMIASHSDGTHYLALT--------QDSSVYSWGNGDGGRLGHGDRVWY 537
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
PK++E + + + CGS ++A+L+ +T+G G G+LGHG +
Sbjct: 538 DEPKLVEALVDKN---ITFIACGSTYSAVLSSNGE--------LYTWGRGNYGRLGHGNS 586
Query: 166 QSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLT 220
+ L+P V L V V+ G T V+++G V+SWG + G G C
Sbjct: 587 DNVLIPTLVTALNGHMVVYVACGSGDSQTLCVTASGIVFSWGDGNYGKLGRGGC------ 640
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRS 274
+G PK D + +V CG + +T G ++++WG+G
Sbjct: 641 ---------------DGSKTPKIVDKLLDINVAKVYCGGQFSAALTAYG-EVYTWGKGEG 684
Query: 275 GVLGTGKTIDFFAPAI--VLWPPLTEEF 300
LG G P + VL P +E
Sbjct: 685 YRLGHGNEEHIRYPKVIEVLKPKKVKEL 712
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 26/207 (12%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P + E+ + P ++T G +T +
Sbjct: 4262 YGWGHNHRGQLGGLEGAKVKLPVLCESLSALRP---VQLTGGEQTLLAVT--------AD 4310
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T S +VP ++ + Q+V++ V+V+ G H +SS G V+S
Sbjct: 4311 GKVYATGYGAAGRLGIGGTDSVMVPTLLESI-QHVFVKKVAVNSGGKHCLALSSEGHVYS 4369
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG E G + + + I +L + + V +ACG H+ +T G+
Sbjct: 4370 WG-EGDDGKLGHGNRLMYDRPKLIEELLGT----------EIVDIACGGHHSAAITSAGW 4418
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
L++WG+GR G LG G + D P +V
Sbjct: 4419 -LYTWGKGRYGRLGHGDSEDQLTPKLV 4444
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 98/231 (42%), Gaps = 40/231 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G S + + G L+ WG + G + + P+ V +GH VV VA
Sbjct: 551 ITFIACGSTYSAVLSSNGELYTWGR---GNYGRLGHGNSDNVLIPTLVTALNGHMVVYVA 607
Query: 64 CGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
CGS + + ++G + +SWG N G+LG G + PKI++ +
Sbjct: 608 CGSGDSQTLCVTASG--------IVFSWGDGNYGKLGRGGCDGSKTPKIVDKLLDINVAK 659
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL-PQY 180
VY CG +A LT +T+G GE +LGHG + P+ ++ L P+
Sbjct: 660 VY---CGGQFSAALTAYGE--------VYTWGKGEGYRLGHGNEEHIRYPKVIEVLKPKK 708
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWG------MEKGLG-------LCPNAS 218
V + V G FH ++ V+ WG ++ LG LCP S
Sbjct: 709 VKELCV--GNFHVLALTEDQLVYGWGRNDYGQIDPALGTIVPEPTLCPTLS 757
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ ++ G SLA+ G +W WG D G + P+ V G VV VA
Sbjct: 3501 VVQIECGAQFSLALTKYGEVWTWGK---GDYFRLGHGNDHHVRKPTLVEGLRGKKVVHVA 3557
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ G+ Y+WG N++GQ G G +P ++ + V
Sbjct: 3558 VGALHCLAVTDTGQV--------YAWGDNDHGQQGNGSTIVNKKPSLVHELDDAR---VN 3606
Query: 124 EVTCGSFHT 132
V+CGS H+
Sbjct: 3607 RVSCGSSHS 3615
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 25/189 (13%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
C + M+L D G+++ WG+ D G +TP + +G VV++ C
Sbjct: 3452 CGSRDAQTMALTAD--GSVYSWGD---GDFGKLGRGGSDGCYTPLLIDRLNGLGVVQIEC 3506
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G++ +AL GE ++WG + +LG G+ +P ++E V
Sbjct: 3507 GAQFSLALTKYGEV--------WTWGKGDYFRLGHGNDHHVRKPTLVEGLRGKK---VVH 3555
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
V G+ H +T D + W G ++GQ G+G+T P V EL +
Sbjct: 3556 VAVGALHCLAVT------DTGQVYAW--GDNDHGQQGNGSTIVNKKPSLVHELDD-ARVN 3606
Query: 185 SVDCGLFHT 193
V CG H+
Sbjct: 3607 RVSCGSSHS 3615
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G + LA+ + G ++ WG+ D +G S + + PS V + V +V
Sbjct: 3552 KVVHVAVGALHCLAVTDTGQVYAWGD---NDHGQQGNGSTIVNKKPSLVHELDDARVNRV 3608
Query: 63 ACGSEHVVALV 73
+CGS H +A V
Sbjct: 3609 SCGSSHSIAWV 3619
>gi|196005109|ref|XP_002112421.1| hypothetical protein TRIADDRAFT_56425 [Trichoplax adhaerens]
gi|190584462|gb|EDV24531.1| hypothetical protein TRIADDRAFT_56425 [Trichoplax adhaerens]
Length = 4625
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 131/288 (45%), Gaps = 34/288 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V GG SL I G ++ WG G + S +P+ + +V++ACG
Sbjct: 2960 TVHPGGRHSLCITREGKVFSWGEGI---DGKLGHGDVTSRLSPTLIEALESKLIVEIACG 3016
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ + GE Y+WG + G+LG GD ++ PK ++ QD + V ++
Sbjct: 3017 SSHSAAVTADGE--------LYTWGLGDYGRLGHGDSKTLHIPKQVKAL-QD--YKVIDI 3065
Query: 126 TCGSFHTALLTHRKRPNDMLESMC-WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
CGS L + ++ C W++G G+ G+LG G ++ +P+++ L +
Sbjct: 3066 ACGSRDAQTLA-------LTDNNCVWSWGDGDFGKLGRGGSEGCNIPQKIDALCGR-DVC 3117
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
+ CG + +S+ G VW+WG KG L SP LI G K +
Sbjct: 3118 RIACGAQFSLALSTTGKVWTWG--KG----DYYRLGHGNDSHYRSPQLIEG----PLKKK 3167
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
++A GA H + VTD G +++SWG G G G T P I L
Sbjct: 3168 RITEIAVGALHCLAVTDTG-EVYSWGDNDHGQQGNGNTTVNKRPQICL 3214
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 114/246 (46%), Gaps = 38/246 (15%)
Query: 53 DFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE 112
+ H V V G H + + G+ + SWG +G+LG GD SRL P +IE
Sbjct: 2952 NMHFVKKVTVHPGGRHSLCITREGKVF--------SWGEGIDGKLGHGDVTSRLSPTLIE 3003
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPE 172
+ E+ CGS H+A +T + +T+GLG+ G+LGHG +++ +P+
Sbjct: 3004 ALESK---LIVEIACGSSHSAAVT--------ADGELYTWGLGDYGRLGHGDSKTLHIPK 3052
Query: 173 QVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAI 228
QVK L Y ++ + CG T ++ VWSWG LG + + DA+
Sbjct: 3053 QVKALQDY-KVIDIACGSRDAQTLALTDNNCVWSWGDGDFGKLGRGGSEGCNIPQKIDAL 3111
Query: 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+D ++ACGA ++ ++ G K+W+WG+G LG G + +P
Sbjct: 3112 CG-------------RDVCRIACGAQFSLALSTTG-KVWTWGKGDYYRLGHGNDSHYRSP 3157
Query: 289 AIVLWP 294
++ P
Sbjct: 3158 QLIEGP 3163
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 130/291 (44%), Gaps = 43/291 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
SV +GG ++ + + ++ WG+ + G +SS TP + G +V ++CG
Sbjct: 3861 SVHSGGRHAMVLTSNFEVFSWGD---GEDGKLGHGDKLSSETPRKIEALLGKQIVHISCG 3917
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S GE Y+WG G+LG GD + L+PK++E + V +V
Sbjct: 3918 SSHSAAITSKGE--------LYTWGKGRYGRLGHGDGDDCLKPKLLEALKS---YKVIDV 3966
Query: 126 TCGSFHTALLTHRKRPNDMLESMC-WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
CGS L + + C W++G G+ G+LG G + P +++ L + +
Sbjct: 3967 ACGSGDAQTLA-------ITDDDCVWSWGDGDYGKLGRGGSDGCKKPLRIESLIG-MAVC 4018
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHG 240
V+CG + ++ GD+++WG KG LG N + R + I
Sbjct: 4019 KVECGSQFSVALTKNGDLYTWG--KGDYYRLGHGTNDHVRRPRKVACLQGKQI------- 4069
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA G+ H V TD G ++++WG G LG G P +V
Sbjct: 4070 ------VTVAAGSLHCVACTDAG-EVFTWGDNDEGQLGNGTLNPIPEPTLV 4113
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 116/263 (44%), Gaps = 39/263 (14%)
Query: 11 GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSP--VWDFHGHTVVKVACGSEH 68
G LA+ + G ++ WG S +GG P V + + ++ACGS +
Sbjct: 522 GEHYLALSSDGCVYSWG-------SGDGGRLGHGDIRREPELVKELVNKKITQIACGSTY 574
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
A+ S GE Y+WG + G+LG G+ E RL P ++ S V +V CG
Sbjct: 575 SAAVTSNGE--------LYTWGRGSYGRLGHGNSEDRLLPTLVAGL---SGSHVVDVACG 623
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY-VYLVSVD 187
S L K + + W++G G+ G+LG G + VP+ V+ L + Y+V+V
Sbjct: 624 SGDAHTLAIDK------DGIVWSWGDGDYGKLGRGGSDCCKVPKVVETLKHHNKYIVNVL 677
Query: 188 CGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV 247
CG + + G VW+WG G L P ++ G + V
Sbjct: 678 CGSQFSVALGKDGTVWTWGKSDGY------RLGHGTLDHVRYPKMVEGLINY-----HIV 726
Query: 248 QVACGAAHTVLVTDDGYKLWSWG 270
+A G +H + +TD+ ++++WG
Sbjct: 727 DIAVGPSHCLALTDN-CQIFTWG 748
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 106/234 (45%), Gaps = 40/234 (17%)
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII-ETFNQDSPWAVYEV 125
EH +AL S G YSWG+ + G+LG GD R P+++ E N+ + ++
Sbjct: 523 EHYLALSSDG--------CVYSWGSGDGGRLGHGD--IRREPELVKELVNK----KITQI 568
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLV 184
CGS ++A +T +T+G G G+LGHG ++ L+P V L +V V
Sbjct: 569 ACGSTYSAAVTSNGE--------LYTWGRGSYGRLGHGNSEDRLLPTLVAGLSGSHVVDV 620
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
+ G HT + G VWSWG + G L R + P ++ H
Sbjct: 621 ACGSGDAHTLAIDKDGIVWSWG-DGDYG-----KLGRGGSDCCKVPKVVETLKHHNKYI- 673
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTE 298
V V CG+ +V + DG +W+WG+ LG G T+D V +P + E
Sbjct: 674 --VNVLCGSQFSVALGKDG-TVWTWGKSDGYRLGHG-TLDH-----VRYPKMVE 718
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 108/264 (40%), Gaps = 37/264 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ + G L+ WG G + P+ V G VV V
Sbjct: 564 KITQIACGSTYSAAVTSNGELYTWGRGSY---GRLGHGNSEDRLLPTLVAGLSGSHVVDV 620
Query: 63 ACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
ACGS H +A+ +D + +SWG + G+LG G + PK++ET + +
Sbjct: 621 ACGSGDAHTLAI--------DKDGIVWSWGDGDYGKLGRGGSDCCKVPKVVETLKHHNKY 672
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V CGS + L + WT+G + +LGHGT P+ V+ L Y
Sbjct: 673 IV-NVLCGSQFSVALGK--------DGTVWTWGKSDGYRLGHGTLDHVRYPKMVEGLINY 723
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGME-KGLGLCPNASLTRNEAGDAISPILISGNGPH 239
++V + G H ++ +++WG + + L + AI+ I+G
Sbjct: 724 -HIVDIAVGPSHCLALTDNCQIFTWGSDVQKYALSSDNYNMEPTCISAINKEFIAG---- 778
Query: 240 GPKFQDPVQVACGAAHTVLVTDDG 263
VACG A L T G
Sbjct: 779 ---------VACGPAQNFLWTSGG 793
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 103/211 (48%), Gaps = 26/211 (12%)
Query: 83 DLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
D + WG N+ GQLG G + S+++ P ++ P ++ GS ++T+
Sbjct: 2868 DSRVFVWGLNDKGQLG-GCKGSKVKSPTEMKNIAALRPVSI---AGGSKTVFIVTY---- 2919
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAG 200
+ + G G NG+LG G T++ +P Q+ L +V V+V G H+ ++ G
Sbjct: 2920 ----DGKVYVSGEGANGRLGLGNTENISIPVQLDTLNMHFVKKVTVHPGGRHSLCITREG 2975
Query: 201 DVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT 260
V+SWG +G+ + L + +SP LI + + V++ACG++H+ VT
Sbjct: 2976 KVFSWG--EGI----DGKLGHGDVTSRLSPTLI-----EALESKLIVEIACGSSHSAAVT 3024
Query: 261 DDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
DG +L++WG G G LG G + P V
Sbjct: 3025 ADG-ELYTWGLGDYGRLGHGDSKTLHIPKQV 3054
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 94/221 (42%), Gaps = 32/221 (14%)
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VA G + + L S G+ Y G + + + P IIE Q
Sbjct: 3808 VAGGEQTLFILTSEGKVYASGLGGSGRLGIGRSDNI--------VTPVIIEPL-QHLKIE 3858
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V G H +LT E W G GE+G+LGHG S+ P +++ L
Sbjct: 3859 KLSVHSGGRHAMVLTSN------FEVFSW--GDGEDGKLGHGDKLSSETPRKIEALLGK- 3909
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+V + CG H++ ++S G++++WG + L + D + P L+
Sbjct: 3910 QIVHISCGSSHSAAITSKGELYTWGKGR------YGRLGHGDGDDCLKPKLL-----EAL 3958
Query: 242 KFQDPVQVACGA--AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
K + VACG+ A T+ +TDD +WSWG G G LG G
Sbjct: 3959 KSYKVIDVACGSGDAQTLAITDDDC-VWSWGDGDYGKLGRG 3998
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 78/208 (37%), Gaps = 30/208 (14%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LAI + +W WG+ D G P + G V KV CGS+
Sbjct: 3970 SGDAQTLAITDDDCVWSWGD---GDYGKLGRGGSDGCKKPLRIESLIGMAVCKVECGSQF 4026
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL G+ Y+WG + +LG G + RP+ + + V G
Sbjct: 4027 SVALTKNGD--------LYTWGKGDYYRLGHGTNDHVRRPRKVACLQGKQ---IVTVAAG 4075
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
S H T D E W G + GQLG+GT P V L + V L V C
Sbjct: 4076 SLHCVACT------DAGEVFTW--GDNDEGQLGNGTLNPIPEPTLVTVL-ENVKLNRVGC 4126
Query: 189 GLFHTSVVSSAGDVWSWGMEKGLGLCPN 216
G H+ WS +G PN
Sbjct: 4127 GSAHSF-------AWSTEAPIDIGYMPN 4147
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 53/129 (41%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+C V+ G S+A+ G L+ WG D G + P V G +V VA
Sbjct: 4017 VCKVECGSQFSVALTKNGDLYTWGK---GDYYRLGHGTNDHVRRPRKVACLQGKQIVTVA 4073
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H VA AGE ++WG N+ GQLG G P ++ +
Sbjct: 4074 AGSLHCVACTDAGEV--------FTWGDNDEGQLGNGTLNPIPEPTLVTVLEN---VKLN 4122
Query: 124 EVTCGSFHT 132
V CGS H+
Sbjct: 4123 RVGCGSAHS 4131
>gi|403364753|gb|EJY82151.1| RCC1 domain containing protein [Oxytricha trifallax]
Length = 1344
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 112/229 (48%), Gaps = 33/229 (14%)
Query: 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
H + +VACGS H++A+ ED +SWG+ G LG G R+ P+ +
Sbjct: 287 HTKPITQVACGSAHILAIT--------EDSELFSWGSGQYGALGFGTRDDIFEPRHLIIE 338
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
+D + + + CG +H+ LT +K+ T+G G+ G+LGHG LVP+++
Sbjct: 339 KKDYTYFIEGIACGKYHSMCLTRKKK--------ILTWGQGQGGRLGHGDEDDVLVPKEI 390
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPIL 232
+L + + + G H++ +S ++++WG LG + S + P L
Sbjct: 391 YDLSKKKPIF-ISAGESHSAAISEKLNLYTWGTGTYGRLGHGMDTSEKK--------PKL 441
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
I + + + V+CGA HT+ +T G ++++G+G+ G LG +
Sbjct: 442 IEDLDQY-----EIIHVSCGAFHTLAITGQG-TVYAFGQGKYGKLGINR 484
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 111/270 (41%), Gaps = 60/270 (22%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P ++D + ++ G H A+ E L Y+WG G+LG G S
Sbjct: 385 LVPKEIYDLSKKKPIFISAGESHSAAI--------SEKLNLYTWGTGTYGRLGHGMDTSE 436
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
+PK+IE +Q + + V+CG+FHT +T + + FG G+ G+LG
Sbjct: 437 KKPKLIEDLDQ---YEIIHVSCGAFHTLAITG--------QGTVYAFGQGKYGKLGINRK 485
Query: 166 QSALV---PEQVKEL-----PQYVYL------VSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
Q V PE++ PQ + + + G H+ ++ +G ++SWG G
Sbjct: 486 QREGVFSRPEKISFYKVGVEPQEMLVQDKNEAILAAAGYNHSLCLAKSGKIYSWGYN-GK 544
Query: 212 GLCPNASLTRNEAGDAISPILI-------------------SGNGPHGPKFQ-DPVQVAC 251
GL L R + + PI I G+ F + +QVAC
Sbjct: 545 GL-----LGRQKGFEEHLPIEIGQIPGELIGKIPNIDELIQRGDLKQEETFSYEVIQVAC 599
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
G +TV +T+ G +++ +G G L K
Sbjct: 600 GVLNTVSLTNGG-EVYVFGSNAYGQLAKDK 628
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 149/350 (42%), Gaps = 35/350 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G S A+ G L++ GN L + G +L F S + + VA
Sbjct: 723 IQMIACGDNYSAAVSAFGELFVTGN--LENGKLGLGQALKKGFLLSFTLIQNLAPIKSVA 780
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H++A+ + +D +CYSWG N GQLG+G +E PK I ++
Sbjct: 781 CGPNHMLAIADYNPDHPIKDGMCYSWGRNWKGQLGIGSKEDSNVPKKI----HNAKERFK 836
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQL-GHGTTQSALVPEQVKELPQYVY 182
+V CG + LT+ + W G N T+ +P+ ++ L Q
Sbjct: 837 KVACGQDFSIGLTYGN------QVYLW----GNNKYFCDSKITKDVDIPQLLQALEQ-AQ 885
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+ + C SV++ G++ WG + +N+ D S ++ K
Sbjct: 886 IKDIACSYKFCSVLNDKGEILIWGS------YLTDRIKQNQKKDKKSQNHLAITKFPMRK 939
Query: 243 FQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI--VLWPPLTEE 299
F ++ ++ G H+ V+ L++WG G LG + ++ I +L + +
Sbjct: 940 FDFLMETISAGQNHSAAVSVK-RSLYTWGHAEGGRLGLNEK-EYKNAKIEPILVQSIHDI 997
Query: 300 FKQDELN----TGGLDDEIKTKDLEGAE--ERDEKLSSAMEEMKLLQSKL 343
+++ N G D+EIK E ++ ++D+K+ S ++E + ++KL
Sbjct: 998 MQKNRQNLKEGRGAGDEEIKNLQYESSKPAQKDDKMMSNIQEERKAENKL 1047
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 24/187 (12%)
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
RP I+ P + +V CGS H +T +S +++G G+ G LG GT
Sbjct: 278 RPTAIKFPKHTKP--ITQVACGSAHILAITE--------DSELFSWGSGQYGALGFGTRD 327
Query: 167 SALVPEQ-VKELPQYVYLVS-VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA 224
P + E Y Y + + CG +H+ ++ + +WG +G L +
Sbjct: 328 DIFEPRHLIIEKKDYTYFIEGIACGKYHSMCLTRKKKILTWGQGQG------GRLGHGDE 381
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
D + P I P F ++ G +H+ +++ L++WG G G LG G
Sbjct: 382 DDVLVPKEIYDLSKKKPIF-----ISAGESHSAAISEK-LNLYTWGTGTYGRLGHGMDTS 435
Query: 285 FFAPAIV 291
P ++
Sbjct: 436 EKKPKLI 442
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 109/269 (40%), Gaps = 66/269 (24%)
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKI------ 110
+ V++VACG + V+L + GE Y +G+N GQL ++ R
Sbjct: 592 YEVIQVACGVLNTVSLTNGGEV--------YVFGSNAYGQLAKDKDQTTFRKYKKQDQNN 643
Query: 111 ---------------IETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG 155
+ F ++ + + CG H ++ R N++ FG G
Sbjct: 644 NNDNSQALDSSEQMSLIKFPGETTVRINYIACGGEHIFAIS---RMNEL-------FGWG 693
Query: 156 EN--GQLGHG-TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG-MEKG- 210
N GQLG G + P ++++ + + + CG +++ VS+ G+++ G +E G
Sbjct: 694 RNDEGQLGLGFVSDFTAEPTLIRQIA-HKNIQMIACGDNYSAAVSAFGELFVTGNLENGK 752
Query: 211 LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD--------D 262
LGL +L + G +S LI P VACG H + + D D
Sbjct: 753 LGL--GQALKK---GFLLSFTLIQNLAPIKS-------VACGPNHMLAIADYNPDHPIKD 800
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G +SWGR G LG G D P +
Sbjct: 801 GM-CYSWGRNWKGQLGIGSKEDSNVPKKI 828
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 77/213 (36%), Gaps = 70/213 (32%)
Query: 54 FHGHTVVKV---ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPK 109
F G T V++ ACG EH+ A+ E + WG N+ GQLGLG + P
Sbjct: 662 FPGETTVRINYIACGGEHIFAISRMNE--------LFGWGRNDEGQLGLGFVSDFTAEPT 713
Query: 110 IIETFNQDSPWAVYEVTCGSFHTALLTHRKR----------------------------- 140
+I Q + + + CG ++A ++
Sbjct: 714 LIR---QIAHKNIQMIACGDNYSAAVSAFGELFVTGNLENGKLGLGQALKKGFLLSFTLI 770
Query: 141 ------------PNDML------------ESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
PN ML + MC+++G GQLG G+ + + VP+++
Sbjct: 771 QNLAPIKSVACGPNHMLAIADYNPDHPIKDGMCYSWGRNWKGQLGIGSKEDSNVPKKIHN 830
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+ V CG + ++ V+ WG K
Sbjct: 831 AKE--RFKKVACGQDFSIGLTYGNQVYLWGNNK 861
>gi|325183095|emb|CCA17552.1| regulator of chromosome condensation (RCC1)like protein putative
[Albugo laibachii Nc14]
Length = 545
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 128/291 (43%), Gaps = 38/291 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
Q + G ++ + + G ++ WG D G F P V D V +V
Sbjct: 35 QTVQISCGSGHTVVLTDDGKVYTWGR---GDDGRLGHGDNGWKFVPRLVEDLRDKKVRQV 91
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
CGS H A+ +GE Y+WG G+LG G+ P ++E+ V
Sbjct: 92 TCGSYHTAAVTVSGE--------LYTWGGGMYGKLGHGNENGHSTPSLVESI---KGLYV 140
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESM-CWTFGLGENGQLGHG-TTQSALVPEQVKELPQY 180
+V CGS HT +L LE+ +T+G ENG GHG T+ P V EL +
Sbjct: 141 RQVACGSRHTVVL---------LENQDVYTWGDKENGVSGHGDTSGHQYSPYCVSELVEI 191
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
CG FHT+ +S G V+++G K L N+ RN+ P+ + G
Sbjct: 192 NIKQISACG-FHTAALSENGQVFTFGEGKFGRLGHNSE--RNQ------PVAKCIDALIG 242
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + QVACG HT VT+ G+ +++WG G G LG G ++ P V
Sbjct: 243 KRIK---QVACGGFHTAAVTESGH-VFTWGGGEHGQLGHGDKVNQIIPTRV 289
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 131/300 (43%), Gaps = 56/300 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPD--SSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ V G + A+ +G L+ WG E G S TPS V G V
Sbjct: 87 KVRQVTCGSYHTAAVTVSGELYTWGGGMYGKLGHGNENGHS-----TPSLVESIKGLYVR 141
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACGS H V L+ E+ Y+WG NG G GD +Q SP+
Sbjct: 142 QVACGSRHTVVLL--------ENQDVYTWGDKENGVSGHGDTSG----------HQYSPY 183
Query: 121 AVYEVT---------CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
V E+ CG FHTA L+ +TFG G+ G+LGH + ++ V
Sbjct: 184 CVSELVEINIKQISACG-FHTAALSE--------NGQVFTFGEGKFGRLGHNSERNQPVA 234
Query: 172 EQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPI 231
+ + L + V CG FHT+ V+ +G V++WG + + L + + I P
Sbjct: 235 KCIDALIGK-RIKQVACGGFHTAAVTESGHVFTWGGGE------HGQLGHGDKVNQIIPT 287
Query: 232 LISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ ++ +Q+ CG +HTV +TD G ++++WG G G LG T P ++
Sbjct: 288 RVE-----SLIDKNIIQLTCGWSHTVALTDKG-EVFTWGNGDHGKLGHNDTNKVTEPKLI 341
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 105/201 (52%), Gaps = 28/201 (13%)
Query: 84 LVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPND 143
+ Y+WG +GQLGLGD + P ++E QD +++CGS HT +LT
Sbjct: 1 MTVYTWGRGEDGQLGLGDTSDQYHPILVEAL-QDRQ--TVQISCGSGHTVVLTD------ 51
Query: 144 MLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVW 203
+ +T+G G++G+LGHG VP V++L + V CG +HT+ V+ +G+++
Sbjct: 52 --DGKVYTWGRGDDGRLGHGDNGWKFVPRLVEDLRDK-KVRQVTCGSYHTAAVTVSGELY 108
Query: 204 SW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+W GM LG NE G + ++ S G + QVACG+ HTV++ +
Sbjct: 109 TWGGGMYGKLG-------HGNENGHSTPSLVESIKGLY------VRQVACGSRHTVVLLE 155
Query: 262 DGYKLWSWGRGRSGVLGTGKT 282
+ +++WG +GV G G T
Sbjct: 156 N-QDVYTWGDKENGVSGHGDT 175
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 19/120 (15%)
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G + +VACG H A+ +G + +WG +GQLG GD+ +++ P +E+
Sbjct: 242 GKRIKQVACGGFHTAAVTESGHVF--------TWGGGEHGQLGHGDKVNQIIPTRVESLI 293
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
+ + ++TCG HT LT + +T+G G++G+LGH T P+ ++
Sbjct: 294 DKN---IIQLTCGWSHTVALTDKGE--------VFTWGNGDHGKLGHNDTNKVTEPKLIE 342
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V GG + A+ +G ++ WG + G V+ P+ V ++++
Sbjct: 244 RIKQVACGGFHTAAVTESGHVFTWGG---GEHGQLGHGDKVNQIIPTRVESLIDKNIIQL 300
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
CG H VAL GE + +WG ++G+LG D PK+IETFN +V
Sbjct: 301 TCGWSHTVALTDKGEVF--------TWGNGDHGKLGHNDTNKVTEPKLIETFNSKRVISV 352
>gi|410957260|ref|XP_003985249.1| PREDICTED: LOW QUALITY PROTEIN: E3 ISG15--protein ligase HERC5
[Felis catus]
Length = 1143
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 100/208 (48%), Gaps = 31/208 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT----PSPVWDFHGHTV 59
I + G SLA+ G L+ WG + G + S F P V + G +
Sbjct: 258 IIQITCGDYHSLALSKGGELFAWGQ------NLHGQLGIGSQFASIAIPQIVENLSGIPL 311
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V+++ G H +AL +G Y SWG N+ GQLGLG + + P +IE +
Sbjct: 312 VQISAGKAHSMALSMSGNIY--------SWGRNDFGQLGLGHTDGKDFPSLIEALDNQK- 362
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V + CG HTALLT + + +TFG G++GQLGH +TQ+ L P V EL
Sbjct: 363 --VEFLACGGSHTALLTK--------DGLVFTFGAGKHGQLGHNSTQNELRPRLVTELAG 412
Query: 180 YVYLVSVDCGLFHT-SVVSSAGDVWSWG 206
+ + CG HT + VS G V+S+G
Sbjct: 413 N-RVTQIACGRQHTLAYVSDLGKVFSFG 439
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 40/241 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQD 117
++++ CG H +AL GE ++WG N +GQLG+G + + + P+I+E
Sbjct: 258 IIQITCGDYHSLALSKGGE--------LFAWGQNLHGQLGIGSQFASIAIPQIVENL--- 306
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
S + +++ G H+ L+ + +++G + GQLG G T P ++ L
Sbjct: 307 SGIPLVQISAGKAHSMALS--------MSGNIYSWGRNDFGQLGLGHTDGKDFPSLIEAL 358
Query: 178 P-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS-- 234
Q V ++ CG HT++++ G V+++G K + L N + + P L++
Sbjct: 359 DNQKVEFLA--CGGSHTALLTKDGLVFTFGAGK------HGQLGHNSTQNELRPRLVTEL 410
Query: 235 -GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
GN Q+ACG HT+ D K++S+G G+ G LG G T + P +
Sbjct: 411 AGN--------RVTQIACGRQHTLAYVSDLGKVFSFGSGKEGQLGNGGTHNQLIPLPMKL 462
Query: 294 P 294
P
Sbjct: 463 P 463
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 20/139 (14%)
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPN-ASLTRNEAGDAISPILISGNGPH 239
++ + CG +H+ +S G++++WG + LG+ AS+ + + +S I +
Sbjct: 258 IIQITCGDYHSLALSKGGELFAWGQNLHGQLGIGSQFASIAIPQIVENLSGIPL------ 311
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
VQ++ G AH++ ++ G ++SWGR G LG G T P+++ +
Sbjct: 312 -------VQISAGKAHSMALSMSG-NIYSWGRNDFGQLGLGHTDGKDFPSLI---EALDN 360
Query: 300 FKQDELNTGGLDDEIKTKD 318
K + L GG + TKD
Sbjct: 361 QKVEFLACGGSHTALLTKD 379
>gi|403306428|ref|XP_003943737.1| PREDICTED: E3 ubiquitin-protein ligase HERC2 [Saimiri boliviensis
boliviensis]
Length = 4472
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 132/291 (45%), Gaps = 33/291 (11%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
M + +V +GG + A+ G ++ WG D G FS ++ P + +
Sbjct: 2684 MVKKVAVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIR 2740
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+ACGS H AL S+GE Y +WG G+LG GD ++L+PK+++
Sbjct: 2741 DIACGSSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR-- 2790
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V +V CGS L E + +++G G+ G+LG G ++ VP+ ++ L
Sbjct: 2791 -VIQVACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNVPQNIERL-NG 2842
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ ++CG + ++ +G VW+WG L + + + P ++ G G
Sbjct: 2843 QGVCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRG 2894
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 2895 KKI---VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 2941
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G S P + G VV VA G
Sbjct: 3681 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGSRSPCDRPRVIESLRGIEVVDVAAG 3737
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 3738 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 3786
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 3787 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPTKIDSLTG-LGV 3837
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 3838 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 3885
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 3886 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 3933
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 116/243 (47%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 170 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 221
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 222 VPLEEPKAISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 273
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 274 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 326
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 327 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 378
Query: 278 GTG 280
G G
Sbjct: 379 GHG 381
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 129/293 (44%), Gaps = 49/293 (16%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSP--VWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G G L S P P + + V KVA
Sbjct: 2636 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGLSSGTVPIPRQITALSSYMVKKVA 2689
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 2690 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 2738
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 2739 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 2789
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG-NGP 238
++ V CG T ++ G V+SWG + G L R + P I NG
Sbjct: 2790 RVIQVACGSRDAQTLALTDEGLVFSWG-DGDFG-----KLGRGGSEGCNVPQNIERLNG- 2842
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 2843 -----QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 2889
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 2738 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 2794
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 2795 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNVPQNIERLNGQ---GV 2845
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 2846 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 2896
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 2897 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 2945
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 2946 GQKITRVACGSSHSV 2960
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 3730 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 3783
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 3784 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPTKIDSL---TG 3834
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 3835 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 3885
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 3886 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 3936
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 3937 -QGKKVN---RVACGSAHTL 3952
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 120/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3583 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 3639
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 3640 ADGKL--------YATGYGAGGRLGIGGTESVSSPTLLESI-QHVFIKKVAVNSGGKHCL 3690
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG+ P ++ L + + +V V G H+
Sbjct: 3691 ALSS--------EGEVYSWGEAEDGKLGHGSRSPCDRPRVIESL-RGIEVVDVAAGGAHS 3741
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 3742 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 3790
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 3791 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 3818
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+C ++ G SLA+ +G +W WG D G S V P V G +V VA
Sbjct: 2845 VCQIECGAQFSLALTKSGVVWTWGK---GDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVA 2901
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ +G+ Y+WG N++GQ G G +P +++ +
Sbjct: 2902 VGALHCLAVTDSGQV--------YAWGDNDHGQQGNGTTTVNRKPTLVQGLEGQK---IT 2950
Query: 124 EVTCGSFHTALLT 136
V CGS H+ T
Sbjct: 2951 RVACGSSHSVAWT 2963
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 301 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 357
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 358 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 406
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 407 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 455
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 456 ACGPAQSFAWSSCSE-WSIGLR 476
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 206 YSWGCGDGGRLGHGDTVPLEEPKAISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 265
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G K + VACG+ A T+ VT++G
Sbjct: 266 RGN------YGRLGHGSSEDEAIPMLVAGL-----KGLKVIDVACGSGDAQTLAVTENG- 313
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 314 QVWSWGDGDYGKLGRGGSDGCKTPKLI 340
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3593 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3630
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3631 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSSPTLLESI-QHVFIKKVAVNSGGKHC 3689
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 3690 LALSSEGEVYSWGEAEDGKLGHGSRSPCDRPRVIESLRGIEV-------------VDVAA 3736
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 3737 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 3775
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 169 LVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDA 227
L P+ V+ L + + ++ H +++ G+V+SWG G G + E A
Sbjct: 171 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG-GRLGHGDTVPLEEPKA 229
Query: 228 ISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
IS G H V +ACG+ ++ +T +G +L++WGRG G LG G + D
Sbjct: 230 ISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGRGNYGRLGHGSSEDEAI 282
Query: 288 PAIV 291
P +V
Sbjct: 283 PMLV 286
>gi|321474724|gb|EFX85688.1| hypothetical protein DAPPUDRAFT_98215 [Daphnia pulex]
Length = 1052
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 145/298 (48%), Gaps = 46/298 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSP--VWDFHGHTVVK 61
I V G +LA + G ++ WG+ +S+ + G ++ S P+P V VV+
Sbjct: 86 ITQVACGAQHTLAQNEWGEVFAWGS----NSNGQLGLNVEESMMPTPKMVKSLATKQVVQ 141
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES-RLRPKIIETFNQDSPW 120
+ACG H +AL + GE Y WG+N++GQLGLG + +P +++ Q P
Sbjct: 142 IACGRSHSMALTNVGEIY--------CWGSNSHGQLGLGSSGTPETKPCLVKLL-QGIP- 191
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKELP 178
+ ++CG+ + +T P+ + +G G+N GQLG G T P Q+K L
Sbjct: 192 -ISHISCGADFSFAVT----PSGAV------YGWGKNSFGQLGLGDTTDRPQPTQLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGN 236
++ + + CG+ HT+ ++ G V+++G M LG C +A+ + + ++
Sbjct: 240 RFQRVTYIRCGMDHTAALTRDGGVFTFGAGMYGQLGHCTSAN-------EMLPRKVLELM 292
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
G Q+ CG HT+ +++++G G SG LGT T + +P +V+ P
Sbjct: 293 G------TTVTQICCGRCHTLAFVPSKGRIYAFGLGGSGQLGTKSTANVNSPQLVIGP 344
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 129/290 (44%), Gaps = 48/290 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I +K G + S +++ G L G+C S PV H + +VA
Sbjct: 47 ILVMKDGKLFSFGLNDYGQL---GHCR-------------SRTRAEPVDGLEAHNITQVA 90
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL-RPKIIETFNQDSPWAV 122
CG++H +A GE ++WG+N+NGQLGL ES + PK++++ + V
Sbjct: 91 CGAQHTLAQNEWGEV--------FAWGSNSNGQLGLNVEESMMPTPKMVKSL---ATKQV 139
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG H+ LT ++ E CW G +GQLG G++ + + +L Q +
Sbjct: 140 VQIACGRSHSMALT------NVGEIYCW--GSNSHGQLGLGSSGTPETKPCLVKLLQGIP 191
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+ + CG + V+ +G V+ WG + G L + D P + +
Sbjct: 192 ISHISCGADFSFAVTPSGAVYGWG-KNSFG-----QLGLGDTTDRPQPTQLK-----SLR 240
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
FQ + CG HT +T DG ++++G G G LG + + P VL
Sbjct: 241 FQRVTYIRCGMDHTAALTRDG-GVFTFGAGMYGQLGHCTSANEMLPRKVL 289
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 31/210 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSP----VWDFHGHT 58
Q+ + G S+A+ N G ++ WG S++ G L SS TP V G
Sbjct: 138 QVVQIACGRSHSMALTNVGEIYCWG------SNSHGQLGLGSSGTPETKPCLVKLLQGIP 191
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ ++CG++ A+ +G Y WG N+ GQLGLGD R +P +++
Sbjct: 192 ISHISCGADFSFAVTPSGAV--------YGWGKNSFGQLGLGDTTDRPQPTQLKSLRFQR 243
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG HTA LT + +TFG G GQLGH T+ + ++P +V EL
Sbjct: 244 ---VTYIRCGMDHTAALTR--------DGGVFTFGAGMYGQLGHCTSANEMLPRKVLEL- 291
Query: 179 QYVYLVSVDCGLFHT-SVVSSAGDVWSWGM 207
+ + CG HT + V S G ++++G+
Sbjct: 292 MGTTVTQICCGRCHTLAFVPSKGRIYAFGL 321
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 33/201 (16%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA----VYEVTCGSFHTALLTHRKRPN 142
+ WG +G+ + I T + SP+ + +V CG HT L+
Sbjct: 2 FCWGRMKHGE-----LGLGGLEEEIITSPRASPFTLVDDIVQVGCGENHTILV------- 49
Query: 143 DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV 202
M + ++FGL + GQLGH +++ P E + V CG HT + G+V
Sbjct: 50 -MKDGKLFSFGLNDYGQLGHCRSRTRAEPVDGLEAHN---ITQVACGAQHTLAQNEWGEV 105
Query: 203 WSWGMEKGLGLCPNASLTRN-EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
++WG N L N E +P ++ + VQ+ACG +H++ +T+
Sbjct: 106 FAWGSNS------NGQLGLNVEESMMPTPKMVKSLAT-----KQVVQIACGRSHSMALTN 154
Query: 262 DGYKLWSWGRGRSGVLGTGKT 282
G +++ WG G LG G +
Sbjct: 155 VG-EIYCWGSNSHGQLGLGSS 174
>gi|340711630|ref|XP_003394376.1| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase
HERC2-like [Bombus terrestris]
Length = 5151
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 133/290 (45%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG D G + + P + + G +V +ACG
Sbjct: 4383 AVNSGGKHCLALSSEGHVYSWGE---GDDGKLGHGNRLMYDRPKLIEELLGTEIVDIACG 4439
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H A+ SAG Y+WG G+LG GD E +L PK++E QD + V +V
Sbjct: 4440 GHHSAAITSAG--------WLYTWGKGRYGRLGHGDSEDQLTPKLVEAL-QD--YKVIDV 4488
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + +P +++ L + ++
Sbjct: 4489 ACGSGDAQTLCVTDDDN------VWSWGDGDYGKLGRGGSDGCKIPMKIESLAG-LGVIK 4541
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G +++WG KG LG + + R A+ G
Sbjct: 4542 VECGSQFSVALTRSGAIYTWG--KGDYHRLGHGTDDHVRRPRKVAAL----------QGK 4589
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V TD G ++++WG G LG G T P +V
Sbjct: 4590 KI---ISIATGSLHCVACTDKG-EVFTWGDNDEGQLGDGTTSALQRPRLV 4635
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 133/293 (45%), Gaps = 37/293 (12%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
M + +V +GG +LA+ G ++ WG + G + VS P + +
Sbjct: 3345 MIKKMAVHSGGKHALALTQDGKIFSWGE---GEDGKLGHGNSVSLDKPRLIESLKSKRIR 3401
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+ACGS H A+ S+GE Y+WG G+LG GD ++++PK++++
Sbjct: 3402 DIACGSGHSAAITSSGE--------LYTWGLGEYGRLGHGDTATQMKPKLVQSLVGQR-- 3451
Query: 121 AVYEVTCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V +V CGS T LT + +++G G+ G+LG G + P + L
Sbjct: 3452 -VIQVACGSRDAQTMALT--------ADGSVYSWGDGDFGKLGRGGSDGCYTPLLIDRL- 3501
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V ++CG + ++ G+VW+WG KG L P L+ G
Sbjct: 3502 NGLGVVQIECGAQFSLALTKYGEVWTWG--KG----DYFRLGHGNDHHVRKPTLV--EGL 3553
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K V VA GA H + VTD G ++++WG G G G TI P++V
Sbjct: 3554 RGKKV---VHVAVGALHCLAVTDTG-QVYAWGDNDHGQQGNGSTIVNKKPSLV 3602
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 129/277 (46%), Gaps = 45/277 (16%)
Query: 22 ALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD--FHGHTVVKVACGSEHVVALVSAGETY 79
A+++WG L D GG L S PV+ + +A GS+ + + G+
Sbjct: 3260 AVYVWG---LNDKDQLGG--LKGSKIKLPVYSEVLSKLKPIHIAGGSKTLFVVSQEGK-- 3312
Query: 80 KGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE--VTCGSFHTALLTH 137
Y+ G NG+LGLGD + PK+I +Q + + + V G H LT
Sbjct: 3313 ------LYACGEGTNGRLGLGDDSNVCEPKLIPFLSQ---YMIKKMAVHSGGKHALALTQ 3363
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
+ +++G GE+G+LGHG + S P ++ L + + + CG H++ ++
Sbjct: 3364 --------DGKIFSWGEGEDGKLGHGNSVSLDKPRLIESL-KSKRIRDIACGSGHSAAIT 3414
Query: 198 SAGDVWSWGM-EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--A 254
S+G++++WG+ E G L + + P L+ Q +QVACG+ A
Sbjct: 3415 SSGELYTWGLGEYG-------RLGHGDTATQMKPKLV-----QSLVGQRVIQVACGSRDA 3462
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
T+ +T DG ++SWG G G LG G + + P ++
Sbjct: 3463 QTMALTADG-SVYSWGDGDFGKLGRGGSDGCYTPLLI 3498
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 108/262 (41%), Gaps = 44/262 (16%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFH 55
++I + GG S AI +AG L+ WG +G + + TP V
Sbjct: 4431 TEIVDIACGGHHSAAITSAGWLYTWG---------KGRYGRLGHGDSEDQLTPKLVEALQ 4481
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
+ V+ VACGS L +D +SWG + G+LG G + P IE+
Sbjct: 4482 DYKVIDVACGSGDAQTLCVT------DDDNVWSWGDGDYGKLGRGGSDGCKIPMKIESL- 4534
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
+ V +V CGS + LT +T+G G+ +LGHGT P +V
Sbjct: 4535 --AGLGVIKVECGSQFSVALTR--------SGAIYTWGKGDYHRLGHGTDDHVRRPRKVA 4584
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q ++S+ G H + G+V++WG + GD + L
Sbjct: 4585 AL-QGKKIISIATGSLHCVACTDKGEVFTWGDND-----------EGQLGDGTTSALQRP 4632
Query: 236 NGPHGPKFQDPVQVACGAAHTV 257
H + + +VACG+AHT+
Sbjct: 4633 RLVHALQGKKITRVACGSAHTL 4654
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 112/258 (43%), Gaps = 56/258 (21%)
Query: 48 PSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P V+ F V +A S+ H +AL +D YSWG + G+LG GDR
Sbjct: 494 PQRVYGFSEKPVTMIASHSDGTHYLALT--------QDSSVYSWGNGDGGRLGHGDRVWY 545
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
PK++E + + + CGS ++A+L+ +T+G G G+LGHG +
Sbjct: 546 DEPKLVEALVDKN---ITFIACGSTYSAVLSSNGE--------LYTWGRGNYGRLGHGNS 594
Query: 166 QSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASL 219
+ L+P V L ++ +V V CG T V+++G V+SWG + G G C
Sbjct: 595 DNVLIPTLVTALNGHM-VVHVACGSGDSQTLCVTASGIVFSWGDGNYGKLGRGGC----- 648
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGR 273
+G PK D + +V CG + +T G ++++WG+G
Sbjct: 649 ----------------DGSKTPKIVDKLLDINVAKVYCGGQFSAALTAYG-EVYTWGKGE 691
Query: 274 SGVLGTGKTIDFFAPAIV 291
LG G P ++
Sbjct: 692 GYRLGHGNEEHIRYPKVI 709
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 26/207 (12%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P + E+ + P ++T G +T +
Sbjct: 4295 YGWGHNHRGQLGGLEGAKVKLPVLCESLSALRP---VQLTGGEQTLLAVT--------AD 4343
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T S +VP ++ + Q+V++ V+V+ G H +SS G V+S
Sbjct: 4344 GKVYATGYGAAGRLGIGGTDSVMVPTLLESI-QHVFVKKVAVNSGGKHCLALSSEGHVYS 4402
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG E G + + + I +L + + V +ACG H+ +T G+
Sbjct: 4403 WG-EGDDGKLGHGNRLMYDRPKLIEELLGT----------EIVDIACGGHHSAAITSAGW 4451
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
L++WG+GR G LG G + D P +V
Sbjct: 4452 -LYTWGKGRYGRLGHGDSEDQLTPKLV 4477
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 95/231 (41%), Gaps = 38/231 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
I + G S + + G L+ WG + G + + P+ V +GH VV V
Sbjct: 558 NITFIACGSTYSAVLSSNGELYTWGR---GNYGRLGHGNSDNVLIPTLVTALNGHMVVHV 614
Query: 63 ACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
ACGS + + ++G + +SWG N G+LG G + PKI++ +
Sbjct: 615 ACGSGDSQTLCVTASG--------IVFSWGDGNYGKLGRGGCDGSKTPKIVDKLLDINVA 666
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
VY CG +A LT +T+G GE +LGHG + P +V E+
Sbjct: 667 KVY---CGGQFSAALTAYGE--------VYTWGKGEGYRLGHGNEEHIRYP-KVIEVLXT 714
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWG------MEKGLG-------LCPNAS 218
+ + G FH ++ V+ WG ++ LG LCP S
Sbjct: 715 KKVKELCVGNFHVLALTEDQLVYGWGRNDYGQIDPALGTVVPEPTLCPTLS 765
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ ++ G SLA+ G +W WG D G + P+ V G VV VA
Sbjct: 3506 VVQIECGAQFSLALTKYGEVWTWGK---GDYFRLGHGNDHHVRKPTLVEGLRGKKVVHVA 3562
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ G+ Y+WG N++GQ G G +P ++ + V
Sbjct: 3563 VGALHCLAVTDTGQV--------YAWGDNDHGQQGNGSTIVNKKPSLVHELDDAR---VN 3611
Query: 124 EVTCGSFHT 132
V+CGS H+
Sbjct: 3612 RVSCGSSHS 3620
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 25/189 (13%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
C + M+L D G+++ WG+ D G +TP + +G VV++ C
Sbjct: 3457 CGSRDAQTMALTAD--GSVYSWGD---GDFGKLGRGGSDGCYTPLLIDRLNGLGVVQIEC 3511
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G++ +AL GE ++WG + +LG G+ +P ++E V
Sbjct: 3512 GAQFSLALTKYGEV--------WTWGKGDYFRLGHGNDHHVRKPTLVEGLRGKK---VVH 3560
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
V G+ H +T D + W G ++GQ G+G+T P V EL +
Sbjct: 3561 VAVGALHCLAVT------DTGQVYAW--GDNDHGQQGNGSTIVNKKPSLVHELDD-ARVN 3611
Query: 185 SVDCGLFHT 193
V CG H+
Sbjct: 3612 RVSCGSSHS 3620
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G + LA+ + G ++ WG+ D +G S + + PS V + V +V
Sbjct: 3557 KVVHVAVGALHCLAVTDTGQVYAWGD---NDHGQQGNGSTIVNKKPSLVHELDDARVNRV 3613
Query: 63 ACGSEHVVALV 73
+CGS H +A V
Sbjct: 3614 SCGSSHSIAWV 3624
>gi|296203907|ref|XP_002806938.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
HERC2-like, partial [Callithrix jacchus]
Length = 4774
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 132/291 (45%), Gaps = 33/291 (11%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
M + +V +GG + A+ G ++ WG D G FS ++ P + +
Sbjct: 2986 MVKKVAVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIR 3042
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+ACGS H AL S+GE Y +WG G+LG GD ++L+PK+++
Sbjct: 3043 DIACGSSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR-- 3092
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V +V CGS L E + +++G G+ G+LG G ++ VP+ ++ L
Sbjct: 3093 -VIQVACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNVPQNIERL-NG 3144
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ ++CG + ++ +G VW+WG L + + + P ++ G G
Sbjct: 3145 QGVCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRG 3196
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3197 KKI---VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3243
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G S P + G VV VA G
Sbjct: 3983 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGSRSPCDRPRVIESLRGVEVVDVAAG 4039
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 4040 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 4088
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4089 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGV 4139
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4140 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4187
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4188 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4235
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 130/293 (44%), Gaps = 49/293 (16%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2938 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYMVKKVA 2991
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 2992 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3040
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3041 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3091
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG-NGP 238
++ V CG T ++ G V+SWG + G L R + P I NG
Sbjct: 3092 RVIQVACGSRDAQTLALTDEGLVFSWG-DGDFG-----KLGRGGSEGCNVPQNIERLNG- 3144
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3145 -----QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3191
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3040 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3096
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3097 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNVPQNIERLNGQ---GV 3147
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3148 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3198
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3199 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3247
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3248 GQKITRVACGSSHSV 3262
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 412 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 463
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G +L
Sbjct: 464 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYXRLD 515
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS--SAGDVWSWGMEKGLGLCPNASL 219
HG + + + L + ++ CG+ ++ G VWSWG + G L
Sbjct: 516 HGRSAMNEILIMISGLDRQKFIYK-SCGIRFAQTLAFYENGQVWSWG-DGDYG-----KL 568
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 569 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 620
Query: 278 GTG 280
G G
Sbjct: 621 GHG 623
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4032 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4085
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4086 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4136
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4137 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4187
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4188 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVA--A 4237
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4238 LQGKKVN---RVACGSAHTL 4254
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 120/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3885 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 3941
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 3942 ADGK--------LYATGYGAGGRLGIGGTESVSSPTLLESI-QHVFIKKVAVNSGGKHCL 3992
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG+ P ++ L + V +V V G H+
Sbjct: 3993 ALSS--------EGEVYSWGEAEDGKLGHGSRSPCDRPRVIESL-RGVEVVDVAAGGAHS 4043
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 4044 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 4092
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4093 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4120
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 76/197 (38%), Gaps = 28/197 (14%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+LA G +W WG+ D G TP + VVKV CGS+ +AL
Sbjct: 548 TLAFYENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALT 604
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
G+ Y SWG +N +LG G E PK++E V +V GS H
Sbjct: 605 KDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAGSTHCL 653
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSVDCGLF 191
LT E W G N Q H T PE LP ++V + CG
Sbjct: 654 ALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGIACGPA 702
Query: 192 HTSVVSSAGDVWSWGME 208
+ SS + WS G+
Sbjct: 703 QSFAWSSCSE-WSIGLR 718
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 74/148 (50%), Gaps = 19/148 (12%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 448 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 507
Query: 207 MEKGLGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDG 263
+ R + G A++ ILI +G KF + +CG A T+ ++G
Sbjct: 508 ---------RGNYXRLDHGRSAMNEILIMISGLDRQKF---IYKSCGIRFAQTLAFYENG 555
Query: 264 YKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 556 -QVWSWGDGDYGKLGRGGSDGCKTPKLI 582
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3895 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3932
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3933 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSSPTLLESI-QHVFIKKVAVNSGGKHC 3991
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ + + V VA
Sbjct: 3992 LALSSEGEVYSWGEAEDGKLGHGSRSPCDRPRVIESLRGVEV-------------VDVAA 4038
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4039 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4077
>gi|449446720|ref|XP_004141119.1| PREDICTED: uncharacterized protein LOC101220986 [Cucumis sativus]
Length = 1075
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 143/302 (47%), Gaps = 44/302 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTV 59
+S + V G + AI ++ L+ WG+ + +S G + +S + P V G V
Sbjct: 317 VSHVDFVACGEYHTCAITSSNDLYTWGDG-IFNSGILGHGTDISHWIPKRVVGSLEGLQV 375
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ VACG+ H S G+ Y++G G LG GDRES + P+ ++ S
Sbjct: 376 LSVACGTWHSALATSNGK--------LYTFGDGTYGVLGHGDRESVVYPREVQLL---SG 424
Query: 120 WAVYEVTCGSFHTALLTH--RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+V CG +HTA + + ++M +T+G G+ +LGHG ++ L+P V L
Sbjct: 425 LRTIKVACGVWHTAAIVEVMSQTGSNMSSRKLFTWGDGDKYRLGHGNKETYLLPTCVSSL 484
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISG 235
Y + + CG T ++++G V++ G LG N + D + P L+
Sbjct: 485 IDYNFH-QLACGHNMTVALTTSGHVFTMGGTAYGQLG---------NPSSDGVIPCLV-- 532
Query: 236 NGPHGPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA 289
QD + +++CGA HTV++T +++SWGRG +G LG G D AP
Sbjct: 533 --------QDRLVGEFVEEISCGAYHTVVLTSRN-EVFSWGRGSNGRLGHGDVEDRKAPT 583
Query: 290 IV 291
++
Sbjct: 584 LI 585
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 130/298 (43%), Gaps = 47/298 (15%)
Query: 10 GGMMSLAIDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
GG I++ G +++WG + LPD ++ TP P+ V ++ACG
Sbjct: 215 GGSGPDDIESLGDVYVWGEIWTDLVLPDGTSSQIPVKNDVLTPKPLETNVVLDVQQIACG 274
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H+ + GE + +WG G+LG G RP ++E + V V
Sbjct: 275 VRHIALVTRQGEVF--------TWGEECGGRLGHGIDRDFSRPHLVEFL---AVSHVDFV 323
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CG +HT +T ND+ W G+ +G LGHGT S +P++V + + ++S
Sbjct: 324 ACGEYHTCAITSS---NDL---YTWGDGIFNSGILGHGTDISHWIPKRVVGSLEGLQVLS 377
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPI---LISGNGPHGPK 242
V CG +H+++ +S G ++++G + G+ L + + P L+SG
Sbjct: 378 VACGTWHSALATSNGKLYTFG-DGTYGV-----LGHGDRESVVYPREVQLLSG------- 424
Query: 243 FQDPVQVACGAAHTVLVTD---------DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++VACG HT + + KL++WG G LG G + P V
Sbjct: 425 -LRTIKVACGVWHTAAIVEVMSQTGSNMSSRKLFTWGDGDKYRLGHGNKETYLLPTCV 481
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 22/144 (15%)
Query: 10 GGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWD-FHGHTVVKVACG 65
G M++A+ +G ++ G L + S++G P V D G V +++CG
Sbjct: 495 GHNMTVALTTSGHVFTMGGTAYGQLGNPSSDG-------VIPCLVQDRLVGEFVEEISCG 547
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
+ H V L S E + SWG +NG+LG GD E R P +IE V +
Sbjct: 548 AYHTVVLTSRNEVF--------SWGRGSNGRLGHGDVEDRKAPTLIEALKDRH---VKSI 596
Query: 126 TCGSFHTALLTHRKRPNDMLESMC 149
+CGS TA + K + +S+C
Sbjct: 597 SCGSNFTASICIHKWVSGADQSVC 620
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+ CG+ H ++V+ G+V++WG E G LG + +R P L+ F
Sbjct: 271 IACGVRHIALVTRQGEVFTWGEECGGRLGHGIDRDFSR--------PHLVEFLAVSHVDF 322
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTGKTIDFFAPAIVL 292
VACG HT +T L++WG G SG+LG G I + P V+
Sbjct: 323 -----VACGEYHTCAITSSN-DLYTWGDGIFNSGILGHGTDISHWIPKRVV 367
>gi|351699519|gb|EHB02438.1| Putative E3 ubiquitin-protein ligase HERC2 [Heterocephalus glaber]
Length = 4833
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3054 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALRAKRIRDIACG 3110
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y+WG G+LG GD ++L+PK+++ V +V
Sbjct: 3111 SSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3159
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3160 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3212
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3213 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3262
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3263 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3306
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 129/292 (44%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G S P V G VV VA G
Sbjct: 4047 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGSRSPCDRPRVVESLRGIEVVDVAAG 4103
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y+WG G+LG D E +L+PK++E V +V
Sbjct: 4104 GAHSACVTAAGD--------LYTWGKGRYGRLGHSDSEDQLKPKLVEVLQGHR---VVDV 4152
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP +++ L + +
Sbjct: 4153 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIESL-TGLGV 4203
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4204 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4251
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4252 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4299
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 116/243 (47%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE + SWG + G+LG GD
Sbjct: 482 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVF--------SWGCGDGGRLGHGDT 533
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + V + CGS ++A +T E +T+G G G+LG
Sbjct: 534 VPLEEPKVISAFSGKQGGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 585
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 586 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 638
Query: 220 TRNEAGDAISPILISGNGPHGPKFQD--PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K QD V+V CG+ +V +T DG +++SWG+G + L
Sbjct: 639 GRGGSDGCKTPKLIE-------KLQDLEVVKVRCGSQFSVALTKDG-QVYSWGKGDNQRL 690
Query: 278 GTG 280
G G
Sbjct: 691 GHG 693
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 130/296 (43%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSP--VWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G G L S P P + + V KVA
Sbjct: 3001 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGLSSGTVPIPRQITALSSYVVKKVA 3054
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3055 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALRAKR--- 3103
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3104 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3154
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWG----MEKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3155 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3205
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3206 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3254
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3103 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3159
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3160 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3210
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3211 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3261
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3262 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3310
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3311 GQKITRVACGSSHSV 3325
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4096 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEVLQGHRV 4149
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V VACGS L +D +SWG + G+LG G + P IE+ +
Sbjct: 4150 VDVACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIESL---TG 4200
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4201 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4251
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4252 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4302
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4303 -QGKKVN---RVACGSAHTL 4318
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 120/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3949 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4005
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ V V G H
Sbjct: 4006 ADGK--------LYATGYGAGGRLGIGGTESVSAPTLLESIQHVFIRKV-AVNSGGKHCL 4056
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG+ P V+ L + + +V V G H+
Sbjct: 4057 ALSS--------EGEVYSWGEAEDGKLGHGSRSPCDRPRVVESL-RGIEVVDVAAGGAHS 4107
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V VACG+
Sbjct: 4108 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEVLQGH-----RVVDVACGS 4156
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4157 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4184
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 80/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 613 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLEVVKVRCGSQF 669
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL G+ Y SWG +N +LG G E P+++E + V +V G
Sbjct: 670 SVALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPRLLEGLHGKK---VIDVAAG 718
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 719 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 767
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 768 ACGPAQSFAWSSCSE-WSIGLR 788
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 80/199 (40%), Gaps = 28/199 (14%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +L + + +W WG+ D G P + G VVKV CGS+
Sbjct: 4156 SGDAQTLCLTDDDTVWSWGD---GDYGKLGRGGSDGCKVPMKIESLTGLGVVKVECGSQF 4212
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL +G Y+WG + +LG G + RP+ ++ V + G
Sbjct: 4213 SVALTKSG--------AVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKK---VIAIATG 4261
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
S H T + +T+G + GQLG GTT + P V L Q + V C
Sbjct: 4262 SLHCVCCTE--------DGEVYTWGDNDEGQLGDGTTNAIQRPRLVAAL-QGKKVNRVAC 4312
Query: 189 GLFH-----TSVVSSAGDV 202
G H TS SSAG +
Sbjct: 4313 GSAHTLAWSTSKPSSAGKL 4331
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 518 FSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQGGKHVVHIACGSTYSAAITAEGELYTWG 577
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 578 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 625
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 626 QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3959 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3996
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3997 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSAPTLLESI-QHVFIRKVAVNSGGKHC 4055
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4056 LALSSEGEVYSWGEAEDGKLGHGSRSPCDRPRVVESLRGIEV-------------VDVAA 4102
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4103 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4141
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 12/141 (8%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 467 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVFSWGCGDGG 526
Query: 212 GLCPNASLTRNEAGDAISPILISG-NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG 270
L ++ E P +IS +G G K V +ACG+ ++ +T +G +L++WG
Sbjct: 527 RLGHGDTVPLEE------PKVISAFSGKQGGKHV--VHIACGSTYSAAITAEG-ELYTWG 577
Query: 271 RGRSGVLGTGKTIDFFAPAIV 291
RG G LG G + D P +V
Sbjct: 578 RGNYGRLGHGSSEDEAIPMLV 598
>gi|156372872|ref|XP_001629259.1| predicted protein [Nematostella vectensis]
gi|156216255|gb|EDO37196.1| predicted protein [Nematostella vectensis]
Length = 4220
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 133/291 (45%), Gaps = 33/291 (11%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
M + SV +GG ++A+ G L+ WG + G + ++ P + F V
Sbjct: 2508 MVRKVSVHSGGRHAMALTIEGKLFSWGEG---EDGKLGHGNRMNCDHPKLIDTFKSSCVR 2564
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++CGS H A++S+GE Y+WG G+LG GD + L+PK +++F
Sbjct: 2565 DMSCGSSHSAAILSSGE--------LYTWGLGEYGRLGHGDNYTHLKPKKVQSFTSHR-- 2614
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++ CGS L + W++G G+ G+LG G ++ VP V++L Q
Sbjct: 2615 -VIDIACGSRDAQTLALTD------DGTVWSWGDGDFGKLGRGGSEGCSVPNPVEKL-QG 2666
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ V CG + +S++G VW+WG KG L P ++ +G G
Sbjct: 2667 QGVCKVACGAQFSLALSTSGLVWTWG--KG----DYYRLGHGNDTHVRKPQIV--DGLRG 2718
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K V VA GA H + VTD G ++++WG G G T P +V
Sbjct: 2719 KKI---VDVAVGALHCLAVTDSG-QVFAWGDNDHGQQGNNTTTVNRRPQLV 2765
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 129/292 (44%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG D G + S P + G V+ ++CG
Sbjct: 3445 AVHSGGKHAMALSADGDVYSWGEG---DDGKLGHGNRNSCDRPRVIEALRGKGVIDISCG 3501
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + E Y+WG G+LG GD E +L PK++E + V +V
Sbjct: 3502 GSHSACITQNHE--------LYTWGKGRYGRLGHGDSEDQLLPKVVEALRGNR---VIDV 3550
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + +P +V+ L + +
Sbjct: 3551 ACGSGDAQTLCLTD--------DDCVWSWGDGDYGKLGRGGSDGCKIPMKVESLIG-LGV 3601
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V+CG + ++ +G V++WG KG LG + + R + A+
Sbjct: 3602 SKVECGSQFSVALTRSGAVYTWG--KGDYYRLGHGVDDHVRRPKRVAAL----------Q 3649
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V TD G ++++WG G LG G T P +V
Sbjct: 3650 GKKV---ITIATGSLHCVASTDTG-EVYTWGDNDEGQLGDGTTNAIARPRLV 3697
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 115/269 (42%), Gaps = 35/269 (13%)
Query: 11 GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVV 70
G LA+ G ++ WG+ D G P+ V G V++++CGS H
Sbjct: 26 GKHFLALTREGEVYSWGSG---DGGKLGHGDTSPREEPTLVTGLAGKQVIRISCGSTHSA 82
Query: 71 ALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF 130
A+ S GE Y+WG N G+LG G E +L P ++ + +V CGS
Sbjct: 83 AVTSEGE--------LYTWGRGNYGRLGHGSSEDQLVPVLVSGLRGHH---IIDVACGSG 131
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
L + W++G G+ G+LG G + P+ ++ L Q + + V CG
Sbjct: 132 DAHTLAAAD------DGTVWSWGDGDYGKLGRGGSDGCKNPKSIERL-QGLGVCKVYCGA 184
Query: 191 FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG-NGPHGPKFQDPVQV 249
+ ++ G VW+WG +G L P L+ +G H V V
Sbjct: 185 QFSLALTRDGSVWTWGKGEGF------RLGHGTEDHVRHPKLVEALDGKH------VVDV 232
Query: 250 ACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
+ G+ H + +TD G +++ WGR G LG
Sbjct: 233 SVGSIHCLALTDAG-EVYCWGRNDQGQLG 260
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 102/233 (43%), Gaps = 46/233 (19%)
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
+H +AL GE Y SWG+ + G+LG GD R P ++ V ++
Sbjct: 27 KHFLALTREGEVY--------SWGSGDGGKLGHGDTSPREEPTLVTGLAGKQ---VIRIS 75
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSV 186
CGS H+A +T E +T+G G G+LGHG+++ LVP V L + +++ V
Sbjct: 76 CGSTHSAAVTS--------EGELYTWGRGNYGRLGHGSSEDQLVPVLVSGLRGH-HIIDV 126
Query: 187 DCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
CG HT + G VWSWG GD +G PK
Sbjct: 127 ACGSGDAHTLAAADDGTVWSWG-----------------DGDYGKLGRGGSDGCKNPKSI 169
Query: 245 DPVQ------VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +Q V CGA ++ +T DG +W+WG+G LG G P +V
Sbjct: 170 ERLQGLGVCKVYCGAQFSLALTRDG-SVWTWGKGEGFRLGHGTEDHVRHPKLV 221
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G S+A+ +GA++ WG D G P V G V+ +A
Sbjct: 3601 VSKVECGSQFSVALTRSGAVYTWGKG---DYYRLGHGVDDHVRRPKRVAALQGKKVITIA 3657
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H VA GE Y +WG N+ GQLG G + RP+++ +
Sbjct: 3658 TGSLHCVASTDTGEVY--------TWGDNDEGQLGDGTTNAIARPRLVTALQGKK---IS 3706
Query: 124 EVTCGSFHT 132
V CGS HT
Sbjct: 3707 RVACGSAHT 3715
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+C V G SLA+ +G +W WG D G + P V G +V VA
Sbjct: 2669 VCKVACGAQFSLALSTSGLVWTWGKG---DYYRLGHGNDTHVRKPQIVDGLRGKKIVDVA 2725
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ +G+ ++WG N++GQ G RP+++ +
Sbjct: 2726 VGALHCLAVTDSGQV--------FAWGDNDHGQQGNNTTTVNRRPQLVNGLEGQK---IT 2774
Query: 124 EVTCGSFHT 132
V CGS H+
Sbjct: 2775 RVACGSSHS 2783
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 85/220 (38%), Gaps = 26/220 (11%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA + G +W WG+ D G P + G V KV CG++
Sbjct: 130 SGDAHTLAAADDGTVWSWGDG---DYGKLGRGGSDGCKNPKSIERLQGLGVCKVYCGAQF 186
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G ++WG +LG G + PK++E + V +V+ G
Sbjct: 187 SLALTRDGSV--------WTWGKGEGFRLGHGTEDHVRHPKLVEALDGKH---VVDVSVG 235
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
S H LT D E CW G + GQLG Q P V L +V + C
Sbjct: 236 SIHCLALT------DAGEVYCW--GRNDQGQLGDIDCQIRPEPTLVSGLASK-GIVGIAC 286
Query: 189 GLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
G + S AG WS G L C + E DA+
Sbjct: 287 GPAQSFAWSCAGQ-WSVGTR--LQFCVDVCKRTFEHLDAL 323
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 48/113 (42%), Gaps = 21/113 (18%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT-----PSPVWDFHGHT 58
+C V G SLA+ G++W WG GF L P V G
Sbjct: 177 VCKVYCGAQFSLALTRDGSVWTWGKGE--------GFRLGHGTEDHVRHPKLVEALDGKH 228
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
VV V+ GS H +AL AGE Y WG N+ GQLG D + R P ++
Sbjct: 229 VVDVSVGSIHCLALTDAGEV--------YCWGRNDQGQLGDIDCQIRPEPTLV 273
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 73/185 (39%), Gaps = 23/185 (12%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +L + + +W WG+ D G P V G V KV CGS+
Sbjct: 3554 SGDAQTLCLTDDDCVWSWGDG---DYGKLGRGGSDGCKIPMKVESLIGLGVSKVECGSQF 3610
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL +G Y+WG + +LG G + RPK + V + G
Sbjct: 3611 SVALTRSG--------AVYTWGKGDYYRLGHGVDDHVRRPKRVAALQGKK---VITIATG 3659
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
S H T D E +T+G + GQLG GTT + P V L Q + V C
Sbjct: 3660 SLHCVAST------DTGE--VYTWGDNDEGQLGDGTTNAIARPRLVTAL-QGKKISRVAC 3710
Query: 189 GLFHT 193
G HT
Sbjct: 3711 GSAHT 3715
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 28/208 (13%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P+ IE P + G T E
Sbjct: 3357 YGWGHNHRGQLGSLEGAKVKLPQTIEALASIRPVQIV----GGEQTLFAV-------TAE 3405
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL-VSVDCGLFHTSVVSSAGDVWSW 205
+ G G G+LG G T + + ++ L V V+V G H +S+ GDV+SW
Sbjct: 3406 GKVYATGYGHGGRLGLGGTDTVTSIKMLESLQHVVVRKVAVHSGGKHAMALSADGDVYSW 3465
Query: 206 GM--EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
G + LG S R +A+ G G + ++CG +H+ +T +
Sbjct: 3466 GEGDDGKLGHGNRNSCDRPRVIEALR-----GKGV--------IDISCGGSHSACITQN- 3511
Query: 264 YKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++L++WG+GR G LG G + D P +V
Sbjct: 3512 HELYTWGKGRYGRLGHGDSEDQLLPKVV 3539
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 33/211 (15%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
+ WG N+ QLG G + S+++ ++ F V ++ GS ++H +
Sbjct: 2424 FVWGLNDKDQLG-GLKGSKIKVPVLSEFI--GALKVQQIAGGSKTLFAVSHDGK------ 2474
Query: 147 SMCWTFGLGE--NGQLGHGT-TQSALVPEQVKELPQY-VYLVSVDCGLFHTSVVSSAGDV 202
F GE NG+LG G + + VP Q++ L + V VSV G H ++ G +
Sbjct: 2475 ----VFACGESTNGRLGLGPLSANVTVPRQIENLSSFMVRKVSVHSGGRHAMALTIEGKL 2530
Query: 203 WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV--QVACGAAHTVLVT 260
+SWG + + L + P LI F+ ++CG++H+ +
Sbjct: 2531 FSWGEGE------DGKLGHGNRMNCDHPKLID-------TFKSSCVRDMSCGSSHSAAIL 2577
Query: 261 DDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G +L++WG G G LG G P V
Sbjct: 2578 SSG-ELYTWGLGEYGRLGHGDNYTHLKPKKV 2607
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G + LA+ ++G ++ WG+ D +G + + P V G + +V
Sbjct: 2720 KIVDVAVGALHCLAVTDSGQVFAWGD---NDHGQQGNNTTTVNRRPQLVNGLEGQKITRV 2776
Query: 63 ACGSEHVVA 71
ACGS H +A
Sbjct: 2777 ACGSSHSIA 2785
>gi|325186780|emb|CCA21326.1| regulator of chromosome condensation (RCC1)like protein putative
[Albugo laibachii Nc14]
Length = 954
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 140/329 (42%), Gaps = 99/329 (30%)
Query: 12 MMSLAIDNAGA-LWMWGNCPLPDSSTEGGFSLVSSF-TPSPVWDFHGHTVVKVACGSEHV 69
+ S+ +D A +++WG P G+S +S TP V G ++ ++ACG H+
Sbjct: 201 IASMELDQKCARVFLWGRPP--------GWSHTNSLLTPQKVDVLPGQSIAEIACGGNHI 252
Query: 70 VALVSAGETYKGED----------------------------------LVC--------- 86
+ L SAG+ Y ED + C
Sbjct: 253 LYLSSAGDVYSSEDHAISTTEPTNMLQTPQLVKELTLEKALHRRPIIHIACGAKHSVALT 312
Query: 87 -----YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
YSWG+ +G+LG G+ R P+ I + + V+CG HTA+++
Sbjct: 313 SAGEVYSWGSGEDGRLGHGEMRDRNVPRKIMALLRHR---IEYVSCGGSHTAVVSD---- 365
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY----LVSVDCGLFHTSVVS 197
+++ +TFG G NG+LG G T+ P++V P + + ++ V CG T +S
Sbjct: 366 ----QNLVFTFGRGRNGRLGLGDTKCHDTPQEV---PTWGFRKQRIIKVVCGWNFTIALS 418
Query: 198 SAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP--VQVAC 251
G V+SWG + GLG C D +SP LI K D V VAC
Sbjct: 419 LEGRVFSWGKQSEGQCGLGFCDQ---------DELSPCLIE-------KLLDNRIVDVAC 462
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
G H++ +T +++ SWG G G LG G
Sbjct: 463 GYTHSLALTSQ-HEVLSWGLGEYGQLGRG 490
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 132/299 (44%), Gaps = 51/299 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G S+A+ +AG ++ WG+ + G + P + H + V+
Sbjct: 298 IIHIACGAKHSVALTSAGEVYSWGS---GEDGRLGHGEMRDRNVPRKIMALLRHRIEYVS 354
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET--FNQDSPWA 121
CG H A+VS ++LV +++G NG+LGLGD + P+ + T F +
Sbjct: 355 CGGSHT-AVVS------DQNLV-FTFGRGRNGRLGLGDTKCHDTPQEVPTWGFRKQR--- 403
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG-TTQSALVPEQVKELPQY 180
+ +V CG T L+ LE +++G GQ G G Q L P +++L
Sbjct: 404 IIKVVCGWNFTIALS--------LEGRVFSWGKQSEGQCGLGFCDQDELSPCLIEKLLDN 455
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGN 236
+V V CG H+ ++S +V SWG+ + G G+ S ++I L +
Sbjct: 456 -RIVDVACGYTHSLALTSQHEVLSWGLGEYGQLGRGIVYQPS------PESIDQSLFACE 508
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI--------DFFA 287
G H P ++ CGA H++ +T L++WG G G G T+ DFFA
Sbjct: 509 GGH------PQRIYCGAFHSI-ITAGSKILYAWGLNSYGACGLGHTLNRDIPERNDFFA 560
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 13/134 (9%)
Query: 161 GHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
G T S L P++V LP + + CG H +SSAGDV+S + +++
Sbjct: 221 GWSHTNSLLTPQKVDVLPGQS-IAEIACGGNHILYLSSAGDVYS---------SEDHAIS 270
Query: 221 RNEAGDAI-SPILISGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
E + + +P L+ + P+ +ACGA H+V +T G +++SWG G G LG
Sbjct: 271 TTEPTNMLQTPQLVKELTLEKALHRRPIIHIACGAKHSVALTSAG-EVYSWGSGEDGRLG 329
Query: 279 TGKTIDFFAPAIVL 292
G+ D P ++
Sbjct: 330 HGEMRDRNVPRKIM 343
>gi|395527072|ref|XP_003765675.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Sarcophilus
harrisii]
Length = 4483
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 133/290 (45%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 2803 AVHSGGRHAMALTVDGKIFSWGEG---DDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 2859
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE Y+WG G+LG GD ++L+PK+++ V +V
Sbjct: 2860 SSHSAAITSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 2908
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 2909 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 2961
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ +G VW+WG KG LG + + + + + G G
Sbjct: 2962 IECGAQFSLALTKSGVVWTWG--KGDYFRLGHGTDVHVRKPQVVE----------GLRGK 3009
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3010 KI---VHVAVGALHCLAVTDTG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3055
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 130/292 (44%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV +A G
Sbjct: 3797 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDIAAG 3853
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y+WG G+LG GD E +L+PK++E + V ++
Sbjct: 3854 GAHSACITAAGD--------LYTWGKGRYGRLGHGDSEDQLKPKLVEALQG---YRVIDI 3902
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 3903 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 3953
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 3954 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4001
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4002 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4049
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 112/255 (43%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S AI ++G L+ WG L + G + P V GH V++V
Sbjct: 2852 RIRDIACGSSHSAAITSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 2908
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 2909 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 2959
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHGT P+ V+ L +
Sbjct: 2960 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGTDVHVRKPQVVEGL-RGKK 3010
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ G V++WG + G N + T N P L+ G +
Sbjct: 3011 IVHVAVGALHCLAVTDTGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3059
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3060 GQKITRVACGSSHSV 3074
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2750 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSNYVVKKVA 2803
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H +AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 2804 VHSGGRHAMALTVDGKIF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 2852
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A +T +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 2853 IRDIACGSSHSAAITSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 2903
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 2904 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 2954
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 2955 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGTDVHVRKPQVV 3003
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 111/263 (42%), Gaps = 48/263 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
++ + AGG S I AG L+ WG +G + + P V G
Sbjct: 3846 EVVDIAAGGAHSACITAAGDLYTWG---------KGRYGRLGHGDSEDQLKPKLVEALQG 3896
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+ V+ +ACGS L +D +SWG + G+LG G + P I++
Sbjct: 3897 YRVIDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-- 3948
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ V +V CGS + LT +T+G G+ +LGHG+ P QV+
Sbjct: 3949 -TGLGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG 3999
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILIS 234
L Q ++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4000 L-QGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVA 4050
Query: 235 GNGPHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4051 --ALQGKKIN---RVACGSAHTL 4068
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P +++ G + + A+
Sbjct: 3699 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALAALRPIQLIGGEQTLFAVT 3755
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 3756 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 3806
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V + G H+
Sbjct: 3807 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDIAAGGAHS 3857
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ +++AGD+++WG + L ++ D + P L+ G + D +ACG+
Sbjct: 3858 ACITAAGDLYTWGKGR------YGRLGHGDSEDQLKPKLV--EALQGYRVID---IACGS 3906
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 3907 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 3934
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 91/209 (43%), Gaps = 30/209 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P E P + G T +
Sbjct: 3709 YGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPIQLI----GGEQTLFAV-------TAD 3757
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T+S P ++ + Q+V++ V+V+ G H +SS G+V+S
Sbjct: 3758 GKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCLALSSEGEVYS 3816
Query: 205 WG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG E G LG + R +++ I + V +A G AH+ +T
Sbjct: 3817 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDIAAGGAHSACITAA 3863
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G L++WG+GR G LG G + D P +V
Sbjct: 3864 G-DLYTWGKGRYGRLGHGDSEDQLKPKLV 3891
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 47/192 (24%)
Query: 59 VVKVACGSEHVVALVSAG----ETYKGEDLV------------CYSWGANNNGQLGLGDR 102
+ ++AC + + L G + Y + LV +SWG + G+LG G
Sbjct: 368 ITQIACAEKRFLILSRNGRVYMQAYNSDTLVGVVAVFSLIFGQVWSWGDGDYGKLGRGGS 427
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
+ PK+IE QD V +V CGS + LT + +++G G+N +LGH
Sbjct: 428 DGCKTPKLIEKL-QD--LDVVKVRCGSQFSVALTK--------DGQVYSWGKGDNQRLGH 476
Query: 163 GTTQSALVPEQVK----ELPQ-------------YVYLVSVDCGLFHTSVVSSAGDVWSW 205
GT + P+ ++ LPQ ++V + CG + SS + WS
Sbjct: 477 GTEEHVRYPKLLEGLQATLPQANCLSKKXXXXLDTKHIVGIACGPAQSFAWSSCSE-WSI 535
Query: 206 GMEKG--LGLCP 215
G+ + +CP
Sbjct: 536 GLRVPFVVDVCP 547
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80
G +W WG+ D G TP + VVKV CGS+ VAL G+ Y
Sbjct: 409 GQVWSWGDG---DYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSVALTKDGQVY- 464
Query: 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
SWG +N +LG G E PK++E P A
Sbjct: 465 -------SWGKGDNQRLGHGTEEHVRYPKLLEGLQATLPQA 498
>gi|384947464|gb|AFI37337.1| E3 ISG15--protein ligase HERC5 [Macaca mulatta]
Length = 1023
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 100/205 (48%), Gaps = 23/205 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G SLA+ G L+ WG G + S+ TP V G + ++
Sbjct: 138 KIIQITCGDYHSLALSKGGELFAWGQN--LHGQLGVGRTFPSTTTPQIVEHLAGVPLAQI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL +G YSWG N GQLGLG ES+ P +IE + V
Sbjct: 196 SAGEAHSMALSMSGNI--------YSWGKNEFGQLGLGHTESKDSPSLIEALDNQK---V 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG H+ALLT + + +TFG G++GQLGH +TQ+ L P V EL
Sbjct: 245 EFLACGGSHSALLTQ--------DGLLFTFGAGKHGQLGHNSTQNELRPCLVAELVGN-R 295
Query: 183 LVSVDCGLFHT-SVVSSAGDVWSWG 206
+ + CG +HT + VS G V+S+G
Sbjct: 296 VTQIACGRWHTLAYVSDFGKVFSFG 320
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 114/238 (47%), Gaps = 40/238 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
++++ CG H +AL GE ++WG N +GQLG+G S P+I+E
Sbjct: 139 IIQITCGDYHSLALSKGGE--------LFAWGQNLHGQLGVGRTFPSTTTPQIVEHL-AG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +++ G H+ L+ + +++G E GQLG G T+S P ++ L
Sbjct: 190 VPLA--QISAGEAHSMALS--------MSGNIYSWGKNEFGQLGLGHTESKDSPSLIEAL 239
Query: 178 P-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS-- 234
Q V ++ CG H+++++ G ++++G K + L N + + P L++
Sbjct: 240 DNQKVEFLA--CGGSHSALLTQDGLLFTFGAGK------HGQLGHNSTQNELRPCLVAEL 291
Query: 235 -GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
GN Q+ACG HT+ D K++S+G G+ G LG G T+D P V
Sbjct: 292 VGN--------RVTQIACGRWHTLAYVSDFGKVFSFGSGKDGQLGNGGTLDQLIPLPV 341
>gi|402869932|ref|XP_003898997.1| PREDICTED: LOW QUALITY PROTEIN: E3 ISG15--protein ligase HERC5
[Papio anubis]
Length = 1023
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 99/205 (48%), Gaps = 23/205 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G SLA+ G L+ WG G S+ TP V G + ++
Sbjct: 138 KIIQITCGDYHSLALSKGGELFAWGQN--LHGQLGVGRKFPSTTTPQIVEHLAGVPLAQI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL +G YSWG N GQLGLG ES+ P +IE + V
Sbjct: 196 SAGEAHSMALSMSGNV--------YSWGKNEFGQLGLGHTESKDSPSLIEALDNQK---V 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG H+ALLT + + +TFG G++GQLGH +TQ+ L P V EL
Sbjct: 245 EFLACGGSHSALLTQ--------DGLLFTFGAGKHGQLGHNSTQNELRPCLVAELVGN-R 295
Query: 183 LVSVDCGLFHT-SVVSSAGDVWSWG 206
+ + CG +HT + VS G V+S+G
Sbjct: 296 VTQIACGRWHTLAYVSDLGKVFSFG 320
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 115/238 (48%), Gaps = 40/238 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
++++ CG H +AL GE ++WG N +GQLG+G + S P+I+E
Sbjct: 139 IIQITCGDYHSLALSKGGE--------LFAWGQNLHGQLGVGRKFPSTTTPQIVEHL-AG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +++ G H+ L+ + +++G E GQLG G T+S P ++ L
Sbjct: 190 VPLA--QISAGEAHSMALS--------MSGNVYSWGKNEFGQLGLGHTESKDSPSLIEAL 239
Query: 178 P-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS-- 234
Q V ++ CG H+++++ G ++++G K + L N + + P L++
Sbjct: 240 DNQKVEFLA--CGGSHSALLTQDGLLFTFGAGK------HGQLGHNSTQNELRPCLVAEL 291
Query: 235 -GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
GN Q+ACG HT+ D K++S+G G+ G LG G T+D P V
Sbjct: 292 VGN--------RVTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGNGGTLDQLIPLPV 341
>gi|387541824|gb|AFJ71539.1| E3 ISG15--protein ligase HERC5 [Macaca mulatta]
Length = 1023
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 100/205 (48%), Gaps = 23/205 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G SLA+ G L+ WG G + S+ TP V G + ++
Sbjct: 138 KIIQITCGDYHSLALSKGGELFAWGQN--LHGQLGVGRTFPSTTTPQIVEHLAGVPLAQI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL +G YSWG N GQLGLG ES+ P +IE + V
Sbjct: 196 SAGEAHSMALSMSGNI--------YSWGKNEFGQLGLGHTESKDSPSLIEALDNQK---V 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG H+ALLT + + +TFG G++GQLGH +TQ+ L P V EL
Sbjct: 245 EFLACGGSHSALLTQ--------DGLLFTFGAGKHGQLGHNSTQNELRPCLVAELVGN-R 295
Query: 183 LVSVDCGLFHT-SVVSSAGDVWSWG 206
+ + CG +HT + VS G V+S+G
Sbjct: 296 VTQIACGRWHTLAYVSDFGKVFSFG 320
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 114/238 (47%), Gaps = 40/238 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
++++ CG H +AL GE ++WG N +GQLG+G S P+I+E
Sbjct: 139 IIQITCGDYHSLALSKGGE--------LFAWGQNLHGQLGVGRTFPSTTTPQIVEHL-AG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +++ G H+ L+ + +++G E GQLG G T+S P ++ L
Sbjct: 190 VPLA--QISAGEAHSMALS--------MSGNIYSWGKNEFGQLGLGHTESKDSPSLIEAL 239
Query: 178 P-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS-- 234
Q V ++ CG H+++++ G ++++G K + L N + + P L++
Sbjct: 240 DNQKVEFLA--CGGSHSALLTQDGLLFTFGAGK------HGQLGHNSTQNELRPCLVAEL 291
Query: 235 -GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
GN Q+ACG HT+ D K++S+G G+ G LG G T+D P V
Sbjct: 292 VGN--------RVTQIACGRWHTLAYVSDFGKVFSFGSGKDGQLGNGGTLDQLIPLPV 341
>gi|304318007|ref|YP_003853152.1| S-layer domain-containing protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779509|gb|ADL70068.1| S-layer domain protein [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
Length = 479
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 126/292 (43%), Gaps = 45/292 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ ++ AG ++A+ N G +W WG D G + + P V VV +A
Sbjct: 228 VKAIAAGAYHTVALKNDGTVWAWG---WNDCGQLGDGTTTNRTIPVQVKGISD--VVAIA 282
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG--LGDRESRLRPKIIETFNQDSPWA 121
G H VAL + G ++WG N + QLG E P ++ +
Sbjct: 283 AGMYHTVALKNDG--------TVWAWGDNEHDQLGNETTKEEYHSTPVQVKGISD----- 329
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V + G+ +T +L + + W +G+ E G+LG GTT ++ P QV +
Sbjct: 330 VKAIAAGASYTVVLKN--------DGTVWAWGVNEYGKLGDGTTNNSFTPVQVNGISN-- 379
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ ++ G +HT V+ + G VW+WG G N + D+ +P+ + G
Sbjct: 380 -VKAIAAGAYHTVVLKNDGTVWTWGYNH-YGELGNGTTV-----DSSTPVQVKG------ 426
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
D +A GA HTV + +DG +W+WG G LG G +D P V W
Sbjct: 427 -ISDVKAIAAGACHTVALKNDG-TVWAWGCNYYGELGNGTAVDSSTPVQVKW 476
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 108/236 (45%), Gaps = 40/236 (16%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
TV +A G+ H VAL + G ++WG N+ GQLG G +R P ++ +
Sbjct: 227 TVKAIAAGAYHTVALKNDG--------TVWAWGWNDCGQLGDGTTTNRTIPVQVKGISD- 277
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL--VPEQVK 175
V + G +HT L + + W +G E+ QLG+ TT+ P QVK
Sbjct: 278 ----VVAIAAGMYHTVALKN--------DGTVWAWGDNEHDQLGNETTKEEYHSTPVQVK 325
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
+ + ++ G +T V+ + G VW+WG+ + L ++ +P+ ++G
Sbjct: 326 GISD---VKAIAAGASYTVVLKNDGTVWAWGVNE------YGKLGDGTTNNSFTPVQVNG 376
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +A GA HTV++ +DG +W+WG G LG G T+D P V
Sbjct: 377 -------ISNVKAIAAGAYHTVVLKNDG-TVWTWGYNHYGELGNGTTVDSSTPVQV 424
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 29/207 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + ++ AG ++A+ N G +W WG+ + G + + +PV G + V
Sbjct: 275 ISDVVAIAAGMYHTVALKNDGTVWAWGD---NEHDQLGNETTKEEYHSTPV-QVKGISDV 330
Query: 61 K-VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
K +A G+ + V L + G ++WG N G+LG G + P + +
Sbjct: 331 KAIAAGASYTVVLKNDG--------TVWAWGVNEYGKLGDGTTNNSFTPVQVNGISN--- 379
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V + G++HT +L + + WT+G G+LG+GTT + P QVK +
Sbjct: 380 --VKAIAAGAYHTVVLKN--------DGTVWTWGYNHYGELGNGTTVDSSTPVQVKGISD 429
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ ++ G HT + + G VW+WG
Sbjct: 430 ---VKAIAAGACHTVALKNDGTVWAWG 453
>gi|332233500|ref|XP_003265940.1| PREDICTED: E3 ISG15--protein ligase HERC5 [Nomascus leucogenys]
Length = 1024
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 99/205 (48%), Gaps = 23/205 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G SLA+ G L+ WG G S+ TP V G + ++
Sbjct: 139 KIIQITCGDYHSLALSKGGELFAWGQN--LHGQLGVGRKFPSTTTPQIVEHLAGVPLAQI 196
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL +G YSWG N GQLGLG ES+ P +IE + V
Sbjct: 197 SAGEAHSMALSMSGNI--------YSWGKNEFGQLGLGHTESKDYPSLIEALDNQE---V 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG H+ALLT + + +TFG G++GQLGH +TQ+ L P V EL
Sbjct: 246 EFLACGGSHSALLTQ--------DGLLFTFGAGKHGQLGHNSTQNELRPCLVAELVGN-R 296
Query: 183 LVSVDCGLFHT-SVVSSAGDVWSWG 206
+ + CG +HT + VS G V+S+G
Sbjct: 297 VTQIACGRWHTLAYVSDLGKVFSFG 321
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 114/238 (47%), Gaps = 40/238 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
++++ CG H +AL GE ++WG N +GQLG+G + S P+I+E
Sbjct: 140 IIQITCGDYHSLALSKGGE--------LFAWGQNLHGQLGVGRKFPSTTTPQIVEHL-AG 190
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +++ G H+ L+ + +++G E GQLG G T+S P ++ L
Sbjct: 191 VPLA--QISAGEAHSMALS--------MSGNIYSWGKNEFGQLGLGHTESKDYPSLIEAL 240
Query: 178 P-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS-- 234
Q V ++ CG H+++++ G ++++G K + L N + + P L++
Sbjct: 241 DNQEVEFLA--CGGSHSALLTQDGLLFTFGAGK------HGQLGHNSTQNELRPCLVAEL 292
Query: 235 -GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
GN Q+ACG HT+ D K++S+G G+ G LG G T D P V
Sbjct: 293 VGN--------RVTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGNGGTRDQLIPLPV 342
>gi|431917309|gb|ELK16842.1| Putative E3 ubiquitin-protein ligase HERC2 [Pteropus alecto]
Length = 3660
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 129/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS + P + + +ACG
Sbjct: 1886 AVHSGGRHATALTADGKVFSWGE---GDDGKLGHFSRXNCDKPRLIEALKSRRIRDIACG 1942
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 1943 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLVGHR---VVQV 1991
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ VP+ ++ L +
Sbjct: 1992 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNVPQNIERL-NGQGVCQ 2044
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 2045 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 2094
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 2095 -VHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 2138
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 126/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 2879 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 2935
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG Y +WG G+LG D E +L+PK++E V +V
Sbjct: 2936 GAHSACVTAAGGLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDV 2984
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP +V L +
Sbjct: 2985 ACGSGDAQTLCLTE--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKVDAL-TGLGA 3035
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 3036 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 3083
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 3084 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 3131
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 131/293 (44%), Gaps = 49/293 (16%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L VSS T P V + V KVA
Sbjct: 1833 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGVSSGTVPVPRQVTALSSYVVKKVA 1886
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL + G+ + SWG ++G+LG R + +P++IE
Sbjct: 1887 VHSGGRHATALTADGKVF--------SWGEGDDGKLGHFSRXNCDKPRLIEALKSRR--- 1935
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 1936 IRDIACGSSHSAALTS--------SGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLVGH- 1986
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG-NGP 238
+V V CG T ++ G V+SWG + G L R + P I NG
Sbjct: 1987 RVVQVACGSRDAQTLALTDEGLVFSWG-DGDFG-----KLGRGGSEGCNVPQNIERLNG- 2039
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 2040 -----QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 2086
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH VV+V
Sbjct: 1935 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLVGHRVVQV 1991
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 1992 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNVPQNIERLNGQ---GV 2042
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 2043 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 2093
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ AG V++WG + G N + T N P L+ G +
Sbjct: 2094 IVHVAVGALHCLAVTDAGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 2142
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 2143 GQKITRVACGSSHSV 2157
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 109/260 (41%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 2928 EVVDVAAGGAHSACVTAAGGLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 2981
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V VACGS L ED +SWG + G+LG G + P ++ +
Sbjct: 2982 VDVACGSGDAQTLCLT------EDDTVWSWGDGDYGKLGRGGSDGCKVPMKVDAL---TG 3032
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 3033 LGAVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 3083
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 3084 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 3134
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 3135 -QGKKVN---RVACGSAHTL 3150
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 117/269 (43%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P ++ G + + A+
Sbjct: 2781 TLSAGGSGTVYGWGH---NHRGQLGGVEGAKVKVPTPCEALAALRPAQLIGGEQTLFAVT 2837
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 2838 ADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 2888
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 2889 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 2939
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AG +++WG + L +++ D + P L+ H V VACG+
Sbjct: 2940 ACVTAAGGLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDVACGS 2988
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +T+D +WSWG G G LG G
Sbjct: 2989 GDAQTLCLTEDD-TVWSWGDGDYGKLGRG 3016
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 90/209 (43%), Gaps = 30/209 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P E P + G T +
Sbjct: 2791 YGWGHNHRGQLGGVEGAKVKVPTPCEALAALRPAQLI----GGEQTLFAV-------TAD 2839
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T+S P ++ + Q+V++ V+V+ G H +SS G+V+S
Sbjct: 2840 GKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCLALSSEGEVYS 2898
Query: 205 WG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG E G LG + R +++ I + V VA G AH+ VT
Sbjct: 2899 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAAGGAHSACVTAA 2945
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G L++WG+GR G LG + D P +V
Sbjct: 2946 G-GLYTWGKGRYGRLGHSDSEDQLKPKLV 2973
>gi|449523373|ref|XP_004168698.1| PREDICTED: uncharacterized protein LOC101228735, partial [Cucumis
sativus]
Length = 958
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 143/302 (47%), Gaps = 44/302 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTV 59
+S + V G + AI ++ L+ WG+ + +S G + +S + P V G V
Sbjct: 179 VSHVDFVACGEYHTCAITSSNDLYTWGD-GIFNSGILGHGTDISHWIPKRVVGSLEGLQV 237
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ VACG+ H S G+ Y++G G LG GDRES + P+ ++ S
Sbjct: 238 LSVACGTWHSALATSNGK--------LYTFGDGTYGVLGHGDRESVVYPREVQLL---SG 286
Query: 120 WAVYEVTCGSFHTALLTH--RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+V CG +HTA + + ++M +T+G G+ +LGHG ++ L+P V L
Sbjct: 287 LRTIKVACGVWHTAAIVEVMSQTGSNMSSRKLFTWGDGDKYRLGHGNKETYLLPTCVSSL 346
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISG 235
Y + + CG T ++++G V++ G LG N + D + P L+
Sbjct: 347 IDYNFH-QLACGHNMTVALTTSGHVFTMGGTAYGQLG---------NPSSDGVIPCLV-- 394
Query: 236 NGPHGPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA 289
QD + +++CGA HTV++T +++SWGRG +G LG G D AP
Sbjct: 395 --------QDRLVGEFVEEISCGAYHTVVLTSRN-EVFSWGRGSNGRLGHGDVEDRKAPT 445
Query: 290 IV 291
++
Sbjct: 446 LI 447
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 130/298 (43%), Gaps = 47/298 (15%)
Query: 10 GGMMSLAIDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
GG I++ G +++WG + LPD ++ TP P+ V ++ACG
Sbjct: 77 GGSGPDDIESLGDVYVWGEIWTDLVLPDGTSSQIPVKNDVLTPKPLETNVVLDVQQIACG 136
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H+ + GE + +WG G+LG G RP ++E + V V
Sbjct: 137 VRHIALVTRQGEVF--------TWGEECGGRLGHGIDRDFSRPHLVEFL---AVSHVDFV 185
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CG +HT +T ND+ W G+ +G LGHGT S +P++V + + ++S
Sbjct: 186 ACGEYHTCAITSS---NDL---YTWGDGIFNSGILGHGTDISHWIPKRVVGSLEGLQVLS 239
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPI---LISGNGPHGPK 242
V CG +H+++ +S G ++++G + G+ L + + P L+SG
Sbjct: 240 VACGTWHSALATSNGKLYTFG-DGTYGV-----LGHGDRESVVYPREVQLLSG------- 286
Query: 243 FQDPVQVACGAAHTVLVTD---------DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++VACG HT + + KL++WG G LG G + P V
Sbjct: 287 -LRTIKVACGVWHTAAIVEVMSQTGSNMSSRKLFTWGDGDKYRLGHGNKETYLLPTCV 343
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 22/144 (15%)
Query: 10 GGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWD-FHGHTVVKVACG 65
G M++A+ +G ++ G L + S++G P V D G V +++CG
Sbjct: 357 GHNMTVALTTSGHVFTMGGTAYGQLGNPSSDG-------VIPCLVQDRLVGEFVEEISCG 409
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
+ H V L S E + SWG +NG+LG GD E R P +IE V +
Sbjct: 410 AYHTVVLTSRNEVF--------SWGRGSNGRLGHGDVEDRKAPTLIEALKDRH---VKSI 458
Query: 126 TCGSFHTALLTHRKRPNDMLESMC 149
+CGS TA + K + +S+C
Sbjct: 459 SCGSNFTASICIHKWVSGADQSVC 482
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+ CG+ H ++V+ G+V++WG E G LG + +R P L+ F
Sbjct: 133 IACGVRHIALVTRQGEVFTWGEECGGRLGHGIDRDFSR--------PHLVEFLAVSHVDF 184
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTGKTIDFFAPAIVL 292
VACG HT +T L++WG G SG+LG G I + P V+
Sbjct: 185 -----VACGEYHTCAITSSN-DLYTWGDGIFNSGILGHGTDISHWIPKRVV 229
>gi|327268092|ref|XP_003218832.1| PREDICTED: e3 ubiquitin-protein ligase HERC2-like [Anolis
carolinensis]
Length = 4839
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 133/290 (45%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3055 AVHSGGRHAMALTVDGKVFSWGEG---DDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3111
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE YSWG G+LG GD ++L+PK+++ V +V
Sbjct: 3112 SSHSAAITSSGE--------LYSWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3160
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3161 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3213
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ +G VW+WG KG LG + + + + + G G
Sbjct: 3214 IECGAQFSLALTKSGVVWTWG--KGDYFRLGHGTDVHVRKPQVVE----------GLRGK 3261
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3262 KI---IHVAVGALHCLAVTDTG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3307
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 130/292 (44%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV +A G
Sbjct: 4048 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDIAAG 4104
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y+WG G+LG GD E +L+PK++E + V ++
Sbjct: 4105 GAHSACITAAGD--------LYTWGKGRYGRLGHGDSEDQLKPKLVEALQG---YRVIDI 4153
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L V +
Sbjct: 4154 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGVGV 4204
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4205 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4252
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4253 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4300
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 116/240 (48%), Gaps = 38/240 (15%)
Query: 48 PSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P V +VK+A S+ H +AL + GE + SWG + G+LG GD
Sbjct: 485 PQLVQSLASRNIVKIAAHSDGHHYLALAATGEVF--------SWGCGDGGRLGHGDTVPL 536
Query: 106 LRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
PK+I + + + V + CGS ++A +T E +T+G G G+LGHG+
Sbjct: 537 EEPKMISALSGKQAGKHVVHIACGSTYSAAITA--------EGELYTWGRGNYGRLGHGS 588
Query: 165 TQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
++ +P V L + + ++ V CG T V+ G VWSWG + G L R
Sbjct: 589 SEDQTIPMLVTGL-KGLKVIDVSCGSGDAQTLAVTENGQVWSWG-DGDYG-----KLGRG 641
Query: 223 EAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ +P LI K Q D V+V+CG+ +V +T DG +++SWG+G + LG G
Sbjct: 642 GSDGCKTPKLIE-------KLQDLDIVKVSCGSQFSVALTKDG-QVYSWGKGDNQRLGHG 693
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 112/255 (43%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S AI ++G L+ WG L + G + P V GH V++V
Sbjct: 3104 RIRDIACGSSHSAAITSSGELYSWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3160
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3161 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3211
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHGT P+ V+ L +
Sbjct: 3212 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGTDVHVRKPQVVEGL-RGKK 3262
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
++ V G H V+ G V++WG + G N + T N P L+ G +
Sbjct: 3263 IIHVAVGALHCLAVTDTGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3311
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3312 GQKITRVACGSSHSV 3326
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 133/337 (39%), Gaps = 85/337 (25%)
Query: 8 KAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSE 67
K G+ S+A +++WG L D GG PS VV+VA GS+
Sbjct: 2951 KTSGLESVATIRT-KVFVWG---LNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSK 3006
Query: 68 HVVALVSAGETYK-GE-------------------------------------------- 82
+ A+ G+ Y GE
Sbjct: 3007 SLFAVTVEGKVYACGEATNGRLGLGLSSGTVPIPRQITALSNYVVKKVAVHSGGRHAMAL 3066
Query: 83 --DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKR 140
D +SWG ++G+LG R + +P++IE + ++ CGS H+A +T
Sbjct: 3067 TVDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEALKTKR---IRDIACGSSHSAAITSSGE 3123
Query: 141 PNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSS 198
+++GLGE G+LGHG + L P+ VK L + ++ V CG T ++
Sbjct: 3124 --------LYSWGLGEYGRLGHGDNTTQLKPKMVKVLLGH-RVIQVACGSRDAQTLALTD 3174
Query: 199 AGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAA 254
G V+SWG + G G ++ +N + NG Q Q+ CGA
Sbjct: 3175 EGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERLNG------QGVCQIECGAQ 3219
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ +T G +W+WG+G LG G + P +V
Sbjct: 3220 FSLALTKSGV-VWTWGKGDYFRLGHGTDVHVRKPQVV 3255
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 108/257 (42%), Gaps = 36/257 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + AGG S I AG L+ WG G P V G+ V+ +
Sbjct: 4097 EVVDIAAGGAHSACITAAGDLYTWGKGRY---GRLGHGDSEDQLKPKLVEALQGYRVIDI 4153
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L +D +SWG + G+LG G + P I++ + V
Sbjct: 4154 ACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TGVGV 4204
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4205 VKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-QGKK 4255
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++++ G H + G+V++WG E LG ++ R P L++ G
Sbjct: 4256 VIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVA--ALQG 4305
Query: 241 PKFQDPVQVACGAAHTV 257
K +VACG+AHT+
Sbjct: 4306 KKIN---RVACGSAHTL 4319
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3950 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4006
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4007 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4057
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V + G H+
Sbjct: 4058 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDIAAGGAHS 4108
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ +++AGD+++WG + L ++ D + P L+ G + D +ACG+
Sbjct: 4109 ACITAAGDLYTWGKGR------YGRLGHGDSEDQLKPKLV--EALQGYRVID---IACGS 4157
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4158 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4185
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 86/214 (40%), Gaps = 30/214 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
S +G +LA+ G +W WG+ D G TP + +VKV+CG
Sbjct: 610 SCGSGDAQTLAVTENGQVWSWGDG---DYGKLGRGGSDGCKTPKLIEKLQDLDIVKVSCG 666
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S+ VAL G+ YSWG +N +LG G E PK++E + V +V
Sbjct: 667 SQFSVALTKDGQV--------YSWGKGDNQRLGHGTEEHVRYPKLLEGLQGEK---VIDV 715
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYL 183
GS H LT E W G N Q H T P+ LP ++
Sbjct: 716 VAGSTHCLALTEDS------EVYSW----GSNDQCQHFDTLRITKPDPTA-LPGLDSKHI 764
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCP 215
V + CG + SS + WS G+ + +CP
Sbjct: 765 VGIACGPAQSFAWSSCSE-WSIGLRVPFVVDVCP 797
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + L ++V + CG +++ +++ G++++WG
Sbjct: 518 FSWGCGDGGRLGHGDTVPLEEPKMISALSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 577
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D V+CG+ A T+ VT++G
Sbjct: 578 RGN------YGRLGHGSSEDQTIPMLVTGL--KGLKVID---VSCGSGDAQTLAVTENG- 625
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 626 QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 93/220 (42%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3960 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3997
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3998 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4056
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V +A
Sbjct: 4057 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDIAA 4103
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ +T G L++WG+GR G LG G + D P +V
Sbjct: 4104 GGAHSACITAAG-DLYTWGKGRYGRLGHGDSEDQLKPKLV 4142
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 154 LGENGQLGHGTTQSALV-PEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ S ++ P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 467 LSRNGRVYTQAYNSDILGPQLVQSLASRNIVKIAAHSDGHHYLALAATGEVFSWGCGDG- 525
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS + G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 526 GRLGHGDTVPLEEPKMISALSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 578
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 579 GNYGRLGHGSSEDQTIPMLV 598
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G + LA+ + G ++ WG+ D +G + + P+ V G + +V
Sbjct: 3262 KIIHVAVGALHCLAVTDTGQVYAWGD---NDHGQQGNGTTTVNRKPTLVQGLEGQKITRV 3318
Query: 63 ACGSEHVVA 71
ACGS H V+
Sbjct: 3319 ACGSSHSVS 3327
>gi|356991167|ref|NP_001239305.1| E3 ubiquitin-protein ligase HERC2 [Gallus gallus]
Length = 4839
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 133/290 (45%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3055 AVHSGGRHAMALTVDGKIFSWGEG---DDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3111
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE Y+WG G+LG GD ++L+PK+++ V +V
Sbjct: 3112 SSHSAAITSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3160
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3161 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3213
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ +G VW+WG KG LG + + + + + G G
Sbjct: 3214 IECGAQFSLALTKSGVVWTWG--KGDYFRLGHGTDVHVRKPQVVE----------GLRGK 3261
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3262 KI---VHVAVGALHCLAVTDTG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3307
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 130/292 (44%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV +A G
Sbjct: 4048 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDIAAG 4104
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ ++WG G+LG GD E +L+PK++E + V ++
Sbjct: 4105 GAHSACITAAGD--------LFTWGKGRYGRLGHGDSEDQLKPKLVEALQG---YRVIDI 4153
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4154 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTD-LGV 4204
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4205 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4252
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4253 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4300
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE + SWG + G+LG GD
Sbjct: 482 TLGPQLVQSLASRNIVKIAAHSDGHHYLALSANGEVF--------SWGCGDGGRLGHGDT 533
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I + + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 534 VPLEEPKLISALSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 585
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 586 HGSSEDQTIPMLVTGL-KGLKVIDVSCGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 638
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG ++++WG+G + L
Sbjct: 639 GRGGSDGCKTPKLIE-------KLQDLDIVKVRCGSQFSIALTKDG-QVYTWGKGDNQRL 690
Query: 278 GTG 280
G G
Sbjct: 691 GHG 693
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 112/255 (43%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S AI ++G L+ WG L + G + P V GH V++V
Sbjct: 3104 RIRDIACGSSHSAAITSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3160
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3161 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3211
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHGT P+ V+ L +
Sbjct: 3212 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGTDVHVRKPQVVEGL-RGKK 3262
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ G V++WG + G N + T N P L+ G +
Sbjct: 3263 IVHVAVGALHCLAVTDTGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3311
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3312 GQKITRVACGSSHSV 3326
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 3002 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSNYVVKKVA 3055
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H +AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3056 VHSGGRHAMALTVDGKIF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3104
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A +T +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3105 IRDIACGSSHSAAITSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3155
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3156 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3206
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3207 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGTDVHVRKPQVV 3255
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 107/257 (41%), Gaps = 36/257 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + AGG S I AG L+ WG G P V G+ V+ +
Sbjct: 4097 EVVDIAAGGAHSACITAAGDLFTWGKG---RYGRLGHGDSEDQLKPKLVEALQGYRVIDI 4153
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L +D +SWG + G+LG G + P I++ V
Sbjct: 4154 ACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTD---LGV 4204
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4205 VKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-QGKK 4255
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++++ G H + G+V++WG E LG ++ R P L++ G
Sbjct: 4256 VIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL--QG 4305
Query: 241 PKFQDPVQVACGAAHTV 257
K +VACG+AHT+
Sbjct: 4306 KKIN---RVACGSAHTL 4319
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 25/206 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+ + G S AI G L+ WG + G S P V G V+ V
Sbjct: 553 HVVHIACGSTYSAAITAEGELYTWGRG---NYGRLGHGSSEDQTIPMLVTGLKGLKVIDV 609
Query: 63 ACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+CGS +A+ G+ + SWG + G+LG G + PK+IE QD
Sbjct: 610 SCGSGDAQTLAVTENGQVW--------SWGDGDYGKLGRGGSDGCKTPKLIEKL-QD--L 658
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ +V CGS + LT + +T+G G+N +LGHGT + P+ ++ L +
Sbjct: 659 DIVKVRCGSQFSIALTK--------DGQVYTWGKGDNQRLGHGTEEHVRYPKLLEGL-KG 709
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWG 206
++ V G H ++ +V SWG
Sbjct: 710 KKVIDVAAGSTHCLALTEDSEVHSWG 735
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 107/238 (44%), Gaps = 44/238 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV++AC + + L G Y A N+ LG P+++++ +
Sbjct: 454 VVQIACAEKRFLILSRNGRVYTQ---------AYNSDTLG---------PQLVQSLASRN 495
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ + G + AL + + +++G G+ G+LGHG T P+ + L
Sbjct: 496 IVKIAAHSDGHHYLALSANGE---------VFSWGCGDGGRLGHGDTVPLEEPKLISALS 546
Query: 179 QYV---YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
++V + CG +++ +++ G++++WG L + D P+L++G
Sbjct: 547 GKQAGKHVVHIACGSTYSAAITAEGELYTWGRGN------YGRLGHGSSEDQTIPMLVTG 600
Query: 236 NGPHGPKFQDPVQVACGA--AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K D V+CG+ A T+ VT++G ++WSWG G G LG G + P ++
Sbjct: 601 L--KGLKVID---VSCGSGDAQTLAVTENG-QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3950 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4006
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4007 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4057
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V + G H+
Sbjct: 4058 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDIAAGGAHS 4108
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ +++AGD+++WG + L ++ D + P L+ G + D +ACG+
Sbjct: 4109 ACITAAGDLFTWGKGR------YGRLGHGDSEDQLKPKLV--EALQGYRVID---IACGS 4157
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4158 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4185
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 93/220 (42%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3960 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3997
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3998 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4056
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V +A
Sbjct: 4057 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDIAA 4103
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ +T G L++WG+GR G LG G + D P +V
Sbjct: 4104 GGAHSACITAAG-DLFTWGKGRYGRLGHGDSEDQLKPKLV 4142
>gi|410223232|gb|JAA08835.1| hect domain and RLD 2 [Pan troglodytes]
gi|410304314|gb|JAA30757.1| hect domain and RLD 2 [Pan troglodytes]
Length = 4834
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3051 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3107
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3108 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3156
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3157 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3209
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3210 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3259
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3260 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3303
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 481 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 532
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 533 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 584
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 585 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 637
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 638 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 689
Query: 278 GTG 280
G G
Sbjct: 690 GHG 692
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4043 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4099
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 4100 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 4148
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4149 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4199
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4200 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4247
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4248 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4295
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2998 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 3051
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3052 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3100
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3101 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3151
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3152 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3202
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3203 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3251
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3100 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3156
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3157 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3207
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3208 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3258
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3259 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3307
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3308 GQKITRVACGSSHSV 3322
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4092 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4145
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4146 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4196
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4197 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4247
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4248 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4298
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4299 -QGKKVN---RVACGSAHTL 4314
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3945 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4001
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4002 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4052
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4053 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4103
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 4104 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 4152
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4153 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4180
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 612 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 668
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 669 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 717
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 718 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 766
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 767 ACGPAQSFAWSSCSE-WSIGLR 787
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 517 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 576
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 577 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 624
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 625 QVWSWGDGDYGKLGRGGSDGCKTPKLI 651
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3955 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3992
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3993 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4051
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4052 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4098
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4099 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4137
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 466 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 524
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 525 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 577
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 578 GNYGRLGHGSSEDEAIPMLV 597
>gi|410223230|gb|JAA08834.1| hect domain and RLD 2 [Pan troglodytes]
gi|410304312|gb|JAA30756.1| hect domain and RLD 2 [Pan troglodytes]
Length = 4834
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3051 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3107
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3108 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3156
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3157 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3209
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3210 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3259
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3260 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3303
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 481 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 532
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 533 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 584
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 585 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 637
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 638 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 689
Query: 278 GTG 280
G G
Sbjct: 690 GHG 692
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4043 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4099
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 4100 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 4148
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4149 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4199
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4200 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4247
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4248 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4295
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2998 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 3051
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3052 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3100
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3101 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3151
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3152 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3202
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3203 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3251
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3100 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3156
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3157 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3207
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3208 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3258
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3259 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3307
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3308 GQKITRVACGSSHSV 3322
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4092 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4145
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4146 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4196
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4197 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4247
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4248 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4298
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4299 -QGKKVN---RVACGSAHTL 4314
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3945 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4001
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4002 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4052
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4053 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4103
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 4104 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 4152
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4153 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4180
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 612 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 668
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 669 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 717
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 718 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 766
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 767 ACGPAQSFAWSSCSE-WSIGLR 787
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 517 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 576
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 577 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 624
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 625 QVWSWGDGDYGKLGRGGSDGCKTPKLI 651
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3955 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3992
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3993 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4051
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4052 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4098
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4099 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4137
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 466 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 524
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 525 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 577
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 578 GNYGRLGHGSSEDEAIPMLV 597
>gi|302855419|ref|XP_002959204.1| hypothetical protein VOLCADRAFT_70529 [Volvox carteri f.
nagariensis]
gi|300255434|gb|EFJ39741.1| hypothetical protein VOLCADRAFT_70529 [Volvox carteri f.
nagariensis]
Length = 367
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 117/284 (41%), Gaps = 67/284 (23%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
F P P+ F G V +VACG H + + GE + ++G N NGQLGLG
Sbjct: 107 FVPRPIEFFSGRPVHRVACGDTHTLVVAGEGELF--------TFGRNQNGQLGLGHTNDC 158
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTH----------------------RKRPND 143
L P+++ + V V CGS H+ T R P
Sbjct: 159 LSPQLVVALQGER---VRSVACGSEHSLAATESGTVFSWGWGRYGNLGDGESQDRYLPTR 215
Query: 144 --------MLESMC--------------WTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
M+ + C +TFG + GQLGHG VP QV L ++
Sbjct: 216 VVGLEGIRMVSAECGWRHSAVVSEDGRVFTFGWSKYGQLGHGDHTDRTVPCQVAAL-RHT 274
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ SV G HT S+G+++ WG K L ++ D SP+L+ G
Sbjct: 275 RISSVAGGWRHTMAADSSGNLYGWGWNK------FGQLGLGDSSDRPSPVLVGG----AL 324
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
Q V CG HTV VT+ G +++SWGRG +G LG G D
Sbjct: 325 AGQRVSLVTCGWRHTVAVTEGG-RVYSWGRGVNGQLGHGAEQDL 367
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 111/234 (47%), Gaps = 31/234 (13%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V V+CGS H VA++S G + SWG +GQLG G + L PK I T
Sbjct: 15 VTAVSCGSSHSVAILSCG--------IVTSWGRGEDGQLGHGQADECLAPKAISTLTDA- 65
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ V CG+ +T + + +++G G+ G+LGHG VP + E
Sbjct: 66 --GIESVVCGAEYTIAVAPSR-------GQVYSWGWGDFGRLGHGDCNDVFVPRPI-EFF 115
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ V CG HT VV+ G+++++G + N L D +SP L+
Sbjct: 116 SGRPVHRVACGDTHTLVVAGEGELFTFGRNQ------NGQLGLGHTNDCLSPQLVV--AL 167
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G + + VACG+ H++ T+ G ++SWG GR G LG G++ D + P V+
Sbjct: 168 QGERVRS---VACGSEHSLAATESG-TVFSWGWGRYGNLGDGESQDRYLPTRVV 217
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 81/209 (38%), Gaps = 32/209 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ SV G SLA +G ++ WG L D ++ + P+ V G +
Sbjct: 171 RVRSVACGSEHSLAATESGTVFSWGWGRYGNLGDGESQ------DRYLPTRVVGLEGIRM 224
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V CG H A+VS ED +++G + GQLG GD R P +
Sbjct: 225 VSAECGWRHS-AVVS-------EDGRVFTFGWSKYGQLGHGDHTDRTVPCQVAALRHTR- 275
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKEL 177
+ V G HT +S +G G N GQLG G + P V
Sbjct: 276 --ISSVAGGWRHTM----------AADSSGNLYGWGWNKFGQLGLGDSSDRPSPVLVGGA 323
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ V CG HT V+ G V+SWG
Sbjct: 324 LAGQRVSLVTCGWRHTVAVTEGGRVYSWG 352
>gi|403263471|ref|XP_003924055.1| PREDICTED: E3 ISG15--protein ligase HERC5 [Saimiri boliviensis
boliviensis]
Length = 1024
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 98/205 (47%), Gaps = 23/205 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G SLA+ G L+ WG G S+ TP V G + ++
Sbjct: 139 KIIQITCGDYHSLALSKGGELFAWGQN--LHGQLGVGRKFPSTTTPQIVEHLSGIPLAQI 196
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL +G YSWG N GQLGL ES+ P +IE + V
Sbjct: 197 SAGEAHSMALSMSGNI--------YSWGKNEFGQLGLDHTESKDSPSLIEALDNQK---V 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTALLT + + +TFG G++GQLGH +TQ+ L P V EL
Sbjct: 246 EFLACGGSHTALLTQ--------DGLLFTFGAGKHGQLGHNSTQNELRPCLVAELAGN-R 296
Query: 183 LVSVDCGLFHT-SVVSSAGDVWSWG 206
+ + CG +HT + VS G V+S+G
Sbjct: 297 VTQIACGRWHTLAYVSDLGKVFSFG 321
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 112/235 (47%), Gaps = 40/235 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
++++ CG H +AL GE ++WG N +GQLG+G + S P+I+E
Sbjct: 140 IIQITCGDYHSLALSKGGE--------LFAWGQNLHGQLGVGRKFPSTTTPQIVEHL--- 188
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
S + +++ G H+ L+ + +++G E GQLG T+S P ++ L
Sbjct: 189 SGIPLAQISAGEAHSMALS--------MSGNIYSWGKNEFGQLGLDHTESKDSPSLIEAL 240
Query: 178 P-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS-- 234
Q V ++ CG HT++++ G ++++G K + L N + + P L++
Sbjct: 241 DNQKVEFLA--CGGSHTALLTQDGLLFTFGAGK------HGQLGHNSTQNELRPCLVAEL 292
Query: 235 -GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
GN Q+ACG HT+ D K++S+G G+ G LG G T D P
Sbjct: 293 AGN--------RVTQIACGRWHTLAYVSDLGKVFSFGSGKEGQLGNGGTRDQLIP 339
>gi|410265950|gb|JAA20941.1| hect domain and RLD 2 [Pan troglodytes]
Length = 4834
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3051 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3107
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3108 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3156
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3157 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3209
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3210 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3259
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3260 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3303
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 481 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 532
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 533 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 584
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 585 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 637
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 638 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 689
Query: 278 GTG 280
G G
Sbjct: 690 GHG 692
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4043 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4099
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 4100 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 4148
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4149 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4199
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4200 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4247
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4248 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4295
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2998 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 3051
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3052 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3100
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3101 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3151
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3152 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3202
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3203 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3251
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3100 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3156
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3157 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3207
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3208 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3258
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3259 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3307
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3308 GQKITRVACGSSHSV 3322
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4092 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4145
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4146 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4196
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4197 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4247
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4248 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4298
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4299 -QGKKVN---RVACGSAHTL 4314
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3945 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4001
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4002 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4052
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4053 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4103
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 4104 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 4152
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4153 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4180
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 612 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 668
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 669 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 717
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 718 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 766
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 767 ACGPAQSFAWSSCSE-WSIGLR 787
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 517 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 576
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 577 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 624
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 625 QVWSWGDGDYGKLGRGGSDGCKTPKLI 651
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3955 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3992
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3993 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4051
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4052 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4098
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4099 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4137
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 466 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 524
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 525 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 577
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 578 GNYGRLGHGSSEDEAIPMLV 597
>gi|134288898|ref|NP_034548.2| E3 ubiquitin-protein ligase HERC2 [Mus musculus]
gi|341941077|sp|Q4U2R1.3|HERC2_MOUSE RecName: Full=E3 ubiquitin-protein ligase HERC2; AltName: Full=HECT
domain and RCC1-like domain-containing protein 2
Length = 4836
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3052 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3108
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3109 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3157
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3158 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3210
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3211 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3260
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3261 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3304
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 116/242 (47%), Gaps = 38/242 (15%)
Query: 46 FTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 483 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDTV 534
Query: 104 SRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
PK+I F+ + + V + CGS ++A +T E +T+G G G+LGH
Sbjct: 535 PLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLGH 586
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
G+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 587 GSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KLG 639
Query: 221 RNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
R + +P LI K Q D ++V CG+ ++ +T DG +++SWG+G + LG
Sbjct: 640 RGGSDGCKTPKLIE-------KLQDLDVIKVRCGSQFSIALTKDG-QVYSWGKGDNQRLG 691
Query: 279 TG 280
G
Sbjct: 692 HG 693
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4045 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4101
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 4102 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VIDI 4150
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4151 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGV 4201
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4202 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4249
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4250 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4297
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 130/296 (43%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSP--VWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G G + S P P + + V KVA
Sbjct: 2999 AGGSKSLFAVTVEGKVYSCGE------ATNGRLGLGMSSGTVPIPRQITALSSYVVKKVA 3052
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3053 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3101
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3102 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3152
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3153 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3203
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3204 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3252
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3101 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3157
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3158 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3208
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3209 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3259
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3260 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3308
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3309 GQKITRVACGSSHSV 3323
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4094 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4147
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4148 IDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4198
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4199 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4249
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4250 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4300
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4301 -QGKKVN---RVACGSAHTL 4316
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3947 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4003
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4004 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4054
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4055 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4105
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H + +ACG+
Sbjct: 4106 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVIDIACGS 4154
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4155 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4182
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + V+KV CGS+
Sbjct: 613 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQF 669
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 670 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 718
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 719 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPTA-LPGLDSKHIVGI 767
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 768 ACGPAQSFAWSSCSE-WSIGLR 788
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 518 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 577
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 578 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 625
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 626 QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3957 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3994
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3995 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4053
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4054 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4100
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4101 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4139
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 467 LSRNGRVYTQAYNSDMLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 525
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 526 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 578
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 579 GNYGRLGHGSSEDEAIPMLV 598
>gi|410048912|ref|XP_003952667.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
HERC2-like [Pan troglodytes]
Length = 4776
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3044 AVHSGGRHATALTVDGKVFSWGEG---DDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3100
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y+WG G+LG GD ++L+PK+++ V +V
Sbjct: 3101 SSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3149
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3150 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3202
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3203 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3252
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3253 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3296
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 481 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 532
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 533 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 584
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 585 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 637
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 638 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 689
Query: 278 GTG 280
G G
Sbjct: 690 GHG 692
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 3985 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4041
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y+WG G+LG D E +L+PK++E V ++
Sbjct: 4042 GAHSACVTAAGD--------LYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 4090
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4091 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4141
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4142 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4189
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4190 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4237
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2991 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 3044
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3045 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3093
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3094 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3144
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3145 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3195
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3196 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3244
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3093 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3149
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3150 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3200
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3201 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3251
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3252 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3300
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3301 GQKITRVACGSSHSV 3315
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4034 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4087
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4088 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4138
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4139 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4189
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4190 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVA--A 4239
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4240 LQGKKVN---RVACGSAHTL 4256
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+C ++ G SLA+ +G +W WG D G S V P V G +V VA
Sbjct: 3200 VCQIECGAQFSLALTKSGVVWTWGK---GDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVA 3256
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ +G+ Y+WG N++GQ G G +P +++ +
Sbjct: 3257 VGALHCLAVTDSGQV--------YAWGDNDHGQQGNGTTTVNRKPTLVQGLEGQK---IT 3305
Query: 124 EVTCGSFHTALLT 136
V CGS H+ T
Sbjct: 3306 RVACGSSHSVAWT 3318
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 24/180 (13%)
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
ES P ++E+ Q V G H L+ E +++G E+G+LGH
Sbjct: 3965 ESVSTPTLLESI-QHVFIKKVAVNSGGKHCLALSS--------EGEVYSWGEAEDGKLGH 4015
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G P ++ L + + +V V G H++ V++AGD+++WG + L +
Sbjct: 4016 GNRSPCDRPRVIESL-RGIEVVDVAAGGAHSACVTAAGDLYTWGKGR------YGRLGHS 4068
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
++ D + P L+ H V +ACG+ A T+ +TDD +WSWG G G LG G
Sbjct: 4069 DSEDQLKPKLVEALQGH-----RVVDIACGSGDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4122
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 612 SGDAQTLAVTENGQVWSWGDG---DYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 668
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 669 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 717
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 718 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 766
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 767 ACGPAQSFAWSSCSE-WSIGLR 787
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 517 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 576
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 577 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 624
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 625 QVWSWGDGDYGKLGRGGSDGCKTPKLI 651
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 19/131 (14%)
Query: 165 TQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWSWG-MEKG-LGLCPNASLT 220
T+S P ++ + Q+V++ V+V+ G H +SS G+V+SWG E G LG +
Sbjct: 3964 TESVSTPTLLESI-QHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCD 4022
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
R +++ I + V VA G AH+ VT G L++WG+GR G LG
Sbjct: 4023 RPRVIESLRGIEV-------------VDVAAGGAHSACVTAAG-DLYTWGKGRYGRLGHS 4068
Query: 281 KTIDFFAPAIV 291
+ D P +V
Sbjct: 4069 DSEDQLKPKLV 4079
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 466 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 524
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 525 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 577
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 578 GNYGRLGHGSSEDEAIPMLV 597
>gi|441617074|ref|XP_004088418.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
HERC2-like [Nomascus leucogenys]
Length = 4530
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 2747 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 2803
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 2804 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 2852
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 2853 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 2905
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 2906 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 2955
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 2956 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 2999
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 3739 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 3795
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 3796 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 3844
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 3845 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 3895
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 3896 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 3943
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 3944 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 3991
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2694 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 2747
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 2748 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 2796
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 2797 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 2847
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWG----MEKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 2848 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 2898
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 2899 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 2947
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 2796 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 2852
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 2853 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 2903
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 2904 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 2954
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 2955 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3003
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3004 GQKITRVACGSSHSV 3018
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 3788 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 3841
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 3842 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 3892
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 3893 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 3943
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 3944 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 3994
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 3995 -QGKKVN---RVACGSAHTL 4010
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 20/148 (13%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 436 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 487
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 488 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 539
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCG 189
HG+++ +P V L + + ++ V CG
Sbjct: 540 HGSSEDEAIPMLVAGL-KGLKVIDVACG 566
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3641 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 3697
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 3698 ADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 3748
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 3749 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 3799
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 3800 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 3848
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 3849 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 3876
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+C ++ G SLA+ +G +W WG D G S V P V G +V VA
Sbjct: 2903 VCQIECGAQFSLALTKSGVVWTWGK---GDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVA 2959
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ +G+ Y+WG N++GQ G G +P +++ +
Sbjct: 2960 VGALHCLAVTDSGQV--------YAWGDNDHGQQGNGTTTVNRKPTLVQGLEGQK---IT 3008
Query: 124 EVTCGSFHTALLT 136
V CGS H+ T
Sbjct: 3009 RVACGSSHSVAWT 3021
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3651 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3688
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3689 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 3747
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 3748 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 3794
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 3795 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 3833
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 421 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 479
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 480 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 532
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 533 GNYGRLGHGSSEDEAIPMLV 552
>gi|395855546|ref|XP_003800216.1| PREDICTED: E3 ubiquitin-protein ligase HERC2 [Otolemur garnettii]
Length = 5093
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3312 AVHSGGRHATALTVDGKVFSWGEG---DDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3368
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y+WG G+LG GD ++L+PK+++ V +V
Sbjct: 3369 SSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3417
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3418 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3470
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3471 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3520
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3521 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3564
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 118/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 742 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 793
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I TF+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 794 VPLEEPKVISTFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 845
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 846 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 898
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 899 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 950
Query: 278 GTG 280
G G
Sbjct: 951 GHG 953
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 127/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G V VA G
Sbjct: 4302 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVADVAAG 4358
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y+WG G+LG D E +L+PK++E V ++
Sbjct: 4359 GAHSACVTAAGD--------LYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 4407
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4408 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4458
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4459 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4506
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4507 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4554
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 114/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3361 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3417
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3418 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3468
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3469 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3519
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ HG +
Sbjct: 3520 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----HGLE 3568
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3569 GQKITRVACGSSHSV 3583
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 130/296 (43%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSP--VWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G G L S P P V + V KVA
Sbjct: 3259 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGLSSGTVPIPRQVTALSSYVVKKVA 3312
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3313 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3361
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3362 IRDIACGSSHSAALTS--------SGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3412
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWG----MEKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3413 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3463
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3464 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3512
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4351 EVADVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4404
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4405 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4455
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4456 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4506
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4507 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4557
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4558 -QGKKVN---RVACGSAHTL 4573
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 118/269 (43%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 4204 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4260
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4261 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4311
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + + V G H+
Sbjct: 4312 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVADVAAGGAHS 4362
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 4363 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 4411
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4412 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4439
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+C ++ G SLA+ +G +W WG D G S V P V G +V VA
Sbjct: 3468 VCQIECGAQFSLALTKSGVVWTWGKG---DYFRLGHGSDVHVRKPQVVEGLRGKKIVHVA 3524
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ +G+ Y+WG N++GQ G G +P ++ +
Sbjct: 3525 VGALHCLAVTDSGQV--------YAWGDNDHGQQGNGTTTVNRKPTLVHGLEGQK---IT 3573
Query: 124 EVTCGSFHTALLT 136
V CGS H+ T
Sbjct: 3574 RVACGSSHSVAWT 3586
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 873 SGDAQTLAVTENGQVWSWGDG---DYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 929
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 930 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 978
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 979 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPTA-LPGLDTKHIVGI 1027
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 1028 ACGPAQSFAWSSCSE-WSIGLR 1048
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 778 YSWGCGDGGRLGHGDTVPLEEPKVISTFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 837
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G K + VACG+ A T+ VT++G
Sbjct: 838 RGN------YGRLGHGSSEDEAIPMLVAGL-----KGLKVIDVACGSGDAQTLAVTENG- 885
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 886 QVWSWGDGDYGKLGRGGSDGCKTPKLI 912
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 4214 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 4251
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 4252 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4310
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I ++ VA
Sbjct: 4311 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVA-------------DVAA 4357
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4358 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4396
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 727 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 785
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 786 GRLGHGDTVPLEEPKVISTFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 838
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 839 GNYGRLGHGSSEDEAIPMLV 858
>gi|326913714|ref|XP_003203179.1| PREDICTED: e3 ubiquitin-protein ligase HERC2-like [Meleagris
gallopavo]
Length = 4815
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 133/290 (45%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3031 AVHSGGRHAMALTVDGKIFSWGEG---DDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3087
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE Y+WG G+LG GD ++L+PK+++ V +V
Sbjct: 3088 SSHSAAITSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3136
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3137 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3189
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ +G VW+WG KG LG + + + + + G G
Sbjct: 3190 IECGAQFSLALTKSGVVWTWG--KGDYFRLGHGTDVHVRKPQVVE----------GLRGK 3237
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3238 KI---VHVAVGALHCLAVTDTG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3283
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 130/292 (44%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV +A G
Sbjct: 4024 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDIAAG 4080
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ ++WG G+LG GD E +L+PK++E + V ++
Sbjct: 4081 GAHSACITAAGD--------LFTWGKGRYGRLGHGDSEDQLKPKLVEALQG---YRVIDI 4129
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4130 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4180
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4181 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4228
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4229 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4276
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE + SWG + G+LG GD
Sbjct: 458 TLGPQLVQSLASRNIVKIAAHSDGHHYLALSANGEVF--------SWGCGDGGRLGHGDT 509
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I + + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 510 VPLEEPKLISALSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 561
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 562 HGSSEDQTIPMLVTGL-KGLKVIDVSCGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 614
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG ++++WG+G + L
Sbjct: 615 GRGGSDGCKTPKLIE-------KLQDLDIVKVRCGSQFSIALTKDG-QVYTWGKGDNQRL 666
Query: 278 GTG 280
G G
Sbjct: 667 GHG 669
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 112/255 (43%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S AI ++G L+ WG L + G + P V GH V++V
Sbjct: 3080 RIRDIACGSSHSAAITSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3136
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3137 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3187
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHGT P+ V+ L +
Sbjct: 3188 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGTDVHVRKPQVVEGL-RGKK 3238
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ G V++WG + G N + T N P L+ G +
Sbjct: 3239 IVHVAVGALHCLAVTDTGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3287
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3288 GQKITRVACGSSHSV 3302
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2978 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSNYVVKKVA 3031
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H +AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3032 VHSGGRHAMALTVDGKIF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3080
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A +T +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3081 IRDIACGSSHSAAITSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3131
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3132 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3182
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3183 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGTDVHVRKPQVV 3231
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 108/257 (42%), Gaps = 36/257 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + AGG S I AG L+ WG G P V G+ V+ +
Sbjct: 4073 EVVDIAAGGAHSACITAAGDLFTWGKG---RYGRLGHGDSEDQLKPKLVEALQGYRVIDI 4129
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L +D +SWG + G+LG G + P I++ + V
Sbjct: 4130 ACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TGLGV 4180
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4181 VKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-QGKK 4231
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++++ G H + G+V++WG E LG ++ R P L++ G
Sbjct: 4232 VIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL--QG 4281
Query: 241 PKFQDPVQVACGAAHTV 257
K +VACG+AHT+
Sbjct: 4282 KKIN---RVACGSAHTL 4295
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 25/206 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+ + G S AI G L+ WG + G S P V G V+ V
Sbjct: 529 HVVHIACGSTYSAAITAEGELYTWGRG---NYGRLGHGSSEDQTIPMLVTGLKGLKVIDV 585
Query: 63 ACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+CGS +A+ G+ + SWG + G+LG G + PK+IE QD
Sbjct: 586 SCGSGDAQTLAVTENGQVW--------SWGDGDYGKLGRGGSDGCKTPKLIEKL-QD--L 634
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ +V CGS + LT + +T+G G+N +LGHGT + P+ ++ L +
Sbjct: 635 DIVKVRCGSQFSIALTK--------DGQVYTWGKGDNQRLGHGTEEHVRYPKLLEGL-KG 685
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWG 206
++ V G H ++ +V SWG
Sbjct: 686 KKVIDVAAGSTHCLALTEDSEVHSWG 711
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 107/238 (44%), Gaps = 44/238 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV++AC + + L G Y A N+ LG P+++++ +
Sbjct: 430 VVQIACAEKRFLILSRNGRVYTQ---------AYNSDTLG---------PQLVQSLASRN 471
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ + G + AL + + +++G G+ G+LGHG T P+ + L
Sbjct: 472 IVKIAAHSDGHHYLALSANGE---------VFSWGCGDGGRLGHGDTVPLEEPKLISALS 522
Query: 179 QYV---YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
++V + CG +++ +++ G++++WG L + D P+L++G
Sbjct: 523 GKQAGKHVVHIACGSTYSAAITAEGELYTWGRGN------YGRLGHGSSEDQTIPMLVTG 576
Query: 236 NGPHGPKFQDPVQVACGA--AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K D V+CG+ A T+ VT++G ++WSWG G G LG G + P ++
Sbjct: 577 L--KGLKVID---VSCGSGDAQTLAVTENG-QVWSWGDGDYGKLGRGGSDGCKTPKLI 628
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3926 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 3982
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 3983 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4033
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V + G H+
Sbjct: 4034 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDIAAGGAHS 4084
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ +++AGD+++WG + L ++ D + P L+ G + D +ACG+
Sbjct: 4085 ACITAAGDLFTWGKGR------YGRLGHGDSEDQLKPKLV--EALQGYRVID---IACGS 4133
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4134 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4161
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 93/220 (42%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3936 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3973
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3974 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4032
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V +A
Sbjct: 4033 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDIAA 4079
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ +T G L++WG+GR G LG G + D P +V
Sbjct: 4080 GGAHSACITAAG-DLFTWGKGRYGRLGHGDSEDQLKPKLV 4118
>gi|196004949|ref|XP_002112341.1| hypothetical protein TRIADDRAFT_56257 [Trichoplax adhaerens]
gi|190584382|gb|EDV24451.1| hypothetical protein TRIADDRAFT_56257 [Trichoplax adhaerens]
Length = 794
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 135/296 (45%), Gaps = 48/296 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF---SLVSSFTPSPVWDFHGHTV 59
+I V AG +LA+ ++ L+ +G +EG P+ + V
Sbjct: 88 KITHVAAGRFHTLAVTDSNKLYSFG------QGSEGALGHGDETDLNMPTSIESLEDKDV 141
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ACG H A+ GE Y WG+N+ GQLGL + ++ P ++ D
Sbjct: 142 NIIACGGYHSAAITKNGE--------LYIWGSNSEGQLGLKN-DTISYPTML-----DLG 187
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALV--PEQVKEL 177
+V V CG +HTA++T + +TFG E G+LG G ++ V P+ VK +
Sbjct: 188 KSVISVACGYYHTAVVT--------ADGKLYTFGETEGGKLGLGDIEAHKVTKPKVVKGI 239
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
V V V CG HT ++++G V+++G + L + + D+ P L+
Sbjct: 240 SGKV--VKVACGGNHTVALTASGQVYTFGSGQNGQLGLGSKIM-----DSNIPKLVEALS 292
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT--IDFFAPAIV 291
K +ACG +HT +V+D G +L+++G GR G LG G + F P V
Sbjct: 293 KRKIK-----HIACGESHTAVVSDKG-ELFTFGDGRHGKLGQGDESFSNLFKPVKV 342
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 131/325 (40%), Gaps = 94/325 (28%)
Query: 17 IDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAG 76
I GA++ +G D+ T + W V +ACG EH V + G
Sbjct: 8 IPETGAVFTFGKSRFGDNRT------------NKFW-IRSDKVTDIACGDEHTVVVTENG 54
Query: 77 ETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLT 136
+++G N GQLG+G ++R +P ++ P + V G FHT +T
Sbjct: 55 R--------LFTFGNNEWGQLGIGSNKTRNKPTTVKAL---KPEKITHVAAGRFHTLAVT 103
Query: 137 HRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ----------------- 179
+ ++FG G G LGHG +P ++ L
Sbjct: 104 DSNK--------LYSFGQGSEGALGHGDETDLNMPTSIESLEDKDVNIIACGGYHSAAIT 155
Query: 180 -----YVY--------------------------LVSVDCGLFHTSVVSSAGDVWSWGME 208
Y++ ++SV CG +HT+VV++ G ++++G
Sbjct: 156 KNGELYIWGSNSEGQLGLKNDTISYPTMLDLGKSVISVACGYYHTAVVTADGKLYTFGET 215
Query: 209 KGLGLCPNASLTRNEAGDAISPILISG-NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLW 267
+G L L EA P ++ G +G V+VACG HTV +T G +++
Sbjct: 216 EGGKL----GLGDIEAHKVTKPKVVKGISGK-------VVKVACGGNHTVALTASG-QVY 263
Query: 268 SWGRGRSGVLGTG-KTIDFFAPAIV 291
++G G++G LG G K +D P +V
Sbjct: 264 TFGSGQNGQLGLGSKIMDSNIPKLV 288
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 39/213 (18%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGG------FSLVSSFTPSPVWDFHGH 57
+ SV G + + G L+ +G TEGG P V G
Sbjct: 190 VISVACGYYHTAVVTADGKLYTFG-------ETEGGKLGLGDIEAHKVTKPKVVKGISGK 242
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR--ESRLRPKIIETFN 115
VVKVACG H VAL ++G+ Y++G+ NGQLGLG + +S + PK++E
Sbjct: 243 -VVKVACGGNHTVALTASGQ--------VYTFGSGQNGQLGLGSKIMDSNI-PKLVEAL- 291
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG--TTQSALVPEQ 173
S + + CG HTA+++ + +TFG G +G+LG G + + P +
Sbjct: 292 --SKRKIKHIACGESHTAVVSDK--------GELFTFGDGRHGKLGQGDESFSNLFKPVK 341
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
V+ L +++ L + CG HT V + D + G
Sbjct: 342 VQRLKEFIVL-HIACGGCHTIVACNKIDKLANG 373
>gi|397515765|ref|XP_003828114.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HERC2
[Pan paniscus]
Length = 4839
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3056 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3112
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3113 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3161
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3162 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3214
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3215 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3264
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3265 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3308
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 427 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 478
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 479 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 530
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 531 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 583
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 584 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 635
Query: 278 GTG 280
G G
Sbjct: 636 GHG 638
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4048 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4104
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 4105 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 4153
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4154 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4204
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4205 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4252
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4253 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4300
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 3003 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 3056
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3057 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3105
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3106 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3156
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3157 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3207
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3208 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3256
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3105 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3161
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3162 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3212
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3213 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3263
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3264 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3312
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3313 GQKITRVACGSSHSV 3327
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4097 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4150
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4151 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4201
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4202 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4252
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4253 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4303
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4304 -QGKKVN---RVACGSAHTL 4319
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3950 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4006
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4007 ADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4057
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4058 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4108
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 4109 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 4157
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4158 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4185
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 558 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 614
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 615 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 663
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 664 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 712
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 713 ACGPAQSFAWSSCSE-WSIGLR 733
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 463 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 522
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 523 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 570
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 571 QVWSWGDGDYGKLGRGGSDGCKTPKLI 597
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3960 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3997
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3998 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4056
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4057 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4103
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4104 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4142
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 412 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 470
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 471 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 523
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 524 GNYGRLGHGSSEDEAIPMLV 543
>gi|405355587|ref|ZP_11024762.1| hypothetical protein A176_0896 [Chondromyces apiculatus DSM 436]
gi|397091294|gb|EJJ22112.1| hypothetical protein A176_0896 [Myxococcus sp. (contaminant ex DSM
436)]
Length = 1473
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 121/291 (41%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S I SV AG ++A+ G +W WG+ S G + P+P+
Sbjct: 266 LSGITSVAAGTYHAVALGKDGTVWTWGSN---SSGQLGDGTWNDRAVPAPL--------- 313
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
G VA + AG E +WGANN+GQLG GD R P ++ +
Sbjct: 314 -PGVGGARAVASLDAGSLALLEGGDVLAWGANNSGQLGDGDTADRSTPSLVPELS----- 367
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
AV V G+ H L RK + W +G G GQLGHG ++ +VP V L
Sbjct: 368 AVTAVVGGAQHA--LALRK------DGTLWAWGGGLAGQLGHGGSERHVVPATVMGLTN- 418
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ S+ G FH+ G VW+WG G + ++T P+ +
Sbjct: 419 --VTSMATGSFHSLAALEDGSVWAWGRNS-YGQLGDGTVTERHV-----PVRV------- 463
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P VA H++ V DG +W+WGR +G LG G T D P V
Sbjct: 464 PGLPSVRAVAAAGHHSIAVAMDG-TVWTWGRNAAGQLGDGTTRDRARPVAV 513
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 123/295 (41%), Gaps = 49/295 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ + +V AG SL + + G +W WG + L T+ G P PV G
Sbjct: 166 FTDVVAVAAGDFHSLVLKSDGTVWAWGTNFHGQLGQGHTQTGL------WPKPVPGLEG- 218
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +A G + +A+ + D SWGAN+ GQLGLG RL P+ I T +
Sbjct: 219 -VVALAAGFDFTLAVHA--------DGAVSSWGANSFGQLGLGTFTQRLSPERIPTLS-- 267
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ V G++H L + WT+G +GQLG GT VP + +
Sbjct: 268 ---GITSVAAGTYHAVALGK--------DGTVWTWGSNSSGQLGDGTWNDRAVPAPLPGV 316
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ S+D G + GDV +WG + L + D +P L+
Sbjct: 317 GGARAVASLDAGSL---ALLEGGDVLAWGANN------SGQLGDGDTADRSTPSLV---- 363
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
P+ V GA H + + DG LW+WG G +G LG G + PA V+
Sbjct: 364 ---PELSAVTAVVGGAQHALALRKDG-TLWAWGGGLAGQLGHGGSERHVVPATVM 414
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 119/283 (42%), Gaps = 42/283 (14%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
+ AG SL + GA+W WG +S+ + G + S SP +V V G
Sbjct: 71 IAAGAQHSLFLTPTGAVWAWGG----NSAGQLGGADTSFQRLSPARLPVLEDIVSVVSGD 126
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
H +AL G D ++WG+N++GQLG G R P+ +E F V V
Sbjct: 127 AHSLAL--------GADGTVWTWGSNSSGQLGDGTTTDRAEPQRVEGFTD-----VVAVA 173
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSV 186
G FH+ +L + W +G +GQLG G TQ+ L P K +P +V++
Sbjct: 174 AGDFHSLVLKS--------DGTVWAWGTNFHGQLGQGHTQTGLWP---KPVPGLEGVVAL 222
Query: 187 DCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 246
G T V + G V SWG G + T+ +SP I P
Sbjct: 223 AAGFDFTLAVHADGAVSSWGANS-FGQLGLGTFTQR-----LSPERI-------PTLSGI 269
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA 289
VA G H V + DG +W+WG SG LG G D PA
Sbjct: 270 TSVAAGTYHAVALGKDG-TVWTWGSNSSGQLGDGTWNDRAVPA 311
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 118/292 (40%), Gaps = 44/292 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ I +V GG SLA+ + G +W WG S G ++ TP + V+
Sbjct: 866 LEGIVAVAGGGDTSLALRSDGTVWAWGANA---SGQVGDGTVEDRLTPRRIEAL--SDVM 920
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +A+ GED ++WGAN +GQLG G L P ++
Sbjct: 921 VIALGESHALAV--------GEDGTVWAWGANASGQLGDGGETPSLLPARVKGLE----- 967
Query: 121 AVYEVTCG-SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V V G +F A+ + W +G E+GQLG G+ QS VP +V +
Sbjct: 968 GVGSVAAGRAFSLAVRD---------DGTAWAWGANESGQLGDGSNQSRRVPHRVASVKG 1018
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
L +V G H + G VW+WG T + GD S +
Sbjct: 1019 ---LRAVSAGAHHAMALGEDGAVWAWGDN-----------TLGQLGDGTSAFTVMWP-QR 1063
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ D VA G +V V DG SWG G LG GKT +PA V
Sbjct: 1064 VAELSDVESVAAGEQFSVAVAHDGTAF-SWGSNEYGQLGDGKTGPRLSPAEV 1114
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 115/291 (39%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + S+ G SLA G++W WG G ++ P V +V
Sbjct: 416 LTNVTSMATGSFHSLAALEDGSVWAWGRNSY---GQLGDGTVTERHVPVRVPGLP--SVR 470
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA H +A+ D ++WG N GQLG G R RP +
Sbjct: 471 AVAAAGHHSIAVA--------MDGTVWTWGRNAAGQLGDGTTRDRARPVAVSGLT----- 517
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+V + G H L + W +G GQLG GT+ L P +V P
Sbjct: 518 SVLAIAAGGSHVLALRS--------DGDVWAWGYNALGQLGDGTSGDKLTPVRV---PGL 566
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ SV G + + +++ G VW+WG L + R +SP+ + G
Sbjct: 567 APIQSVAAGTYFSMALANDGTVWTWGEGFEGQLGDGGGVQR------LSPVAVKG----- 615
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D ++ G+AH + V DG +W+WG G LG G +D FAP V
Sbjct: 616 --LSDIRNISVGSAHALAVRGDG-TVWAWGDNNEGQLGDGSWMDRFAPVQV 663
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 117/288 (40%), Gaps = 38/288 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ +V AG ++A+ GA+W WG+ L G S + P V + V VA
Sbjct: 1019 LRAVSAGAHHAMALGEDGAVWAWGDNTLGQLGD--GTSAFTVMWPQRVAELS--DVESVA 1074
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G + VA+ D +SWG+N GQLG G RL P ++ + V
Sbjct: 1075 AGEQFSVAVA--------HDGTAFSWGSNEYGQLGDGKTGPRLSPAEVKIGGSKARTVVT 1126
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
G AL M + +G GQLG GTT P +++ + + +
Sbjct: 1127 VGAWGQHAVAL---------MADGTLQAWGDNATGQLGDGTTTRRSSPGEIRGVTR---V 1174
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+V G +H+ + G VW+WG G G + + T P+ + G
Sbjct: 1175 TAVSTGAWHSLALRLDGTVWAWG-ANGFGQLGDGTTTARAV-----PVPVQG-------L 1221
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+D V +A G H+V V DG +W+WG G LG G + P V
Sbjct: 1222 RDVVAIAAGGYHSVAVRSDG-TVWTWGYNTFGQLGDGTSESRALPVQV 1268
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 122/303 (40%), Gaps = 56/303 (18%)
Query: 6 SVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
SV +GG SL + G +W WG L D +T + P V G +V V
Sbjct: 821 SVASGGQHSLVLACDGTVWTWGENQRGQLGDGTTS------ARVAPGRVEGLEG--IVAV 872
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G + +AL S D ++WGAN +GQ+G G E RL P+ IE + V
Sbjct: 873 AGGGDTSLALRS--------DGTVWAWGANASGQVGDGTVEDRLTPRRIEALSD-----V 919
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ G H + + W +G +GQLG G +L+P +VK L
Sbjct: 920 MVIALGESHALAVGE--------DGTVWAWGANASGQLGDGGETPSLLPARVKGLEG--- 968
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG-P 241
+ SV G + V G W+WG + L ++ +R PH
Sbjct: 969 VGSVAAGRAFSLAVRDDGTAWAWGANESGQLGDGSNQSRRV--------------PHRVA 1014
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFK 301
+ V+ GA H + + +DG +W+WG G LG G T F V+WP E
Sbjct: 1015 SVKGLRAVSAGAHHAMALGEDG-AVWAWGDNTLGQLGDG-TSAF----TVMWPQRVAELS 1068
Query: 302 QDE 304
E
Sbjct: 1069 DVE 1071
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 117/301 (38%), Gaps = 55/301 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ + ++ AGG S+A+ + G +W WG L D ++E S P V G
Sbjct: 1221 LRDVVAIAAGGYHSVAVRSDGTVWTWGYNTFGQLGDGTSE------SRALPVQVHKLEG- 1273
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V V G H +AL + D WG N +GQLG G R R P ++ +
Sbjct: 1274 -VQAVTGGDHHSLALHA--------DGTVSGWGHNASGQLGDGSRTDRYTPVRLKDVD-- 1322
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT--QSALVPEQVK 175
+ EV G+ HT L + WT+G +GQLG G T + LVP+ V
Sbjct: 1323 ---GLTEVRAGAAHTVALGK--------DGTVWTWGDNAHGQLGDGVTGPRMRLVPKPVS 1371
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILI 233
LP ++ G +H+ ++WG LG+ NA R E
Sbjct: 1372 GLPAAT---AIGAGAWHSFASGPEEGAFTWGRNSHGQLGVGDNAP--RAE---------- 1416
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
P K ++V G A T L L SWG G LG G +P VL
Sbjct: 1417 ----PQRMKLLSGLKVIAGGADTSLAMTQEGVLMSWGSSLHGTLGLGVLGQRASPGRVLL 1472
Query: 294 P 294
P
Sbjct: 1473 P 1473
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 117/280 (41%), Gaps = 45/280 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT-VVKV 62
+ +V A G ++A+ G L WG D++T ++ SP + G T V V
Sbjct: 1124 VVTVGAWGQHAVALMADGTLQAWG-----DNATGQLGDGTTTRRSSPG-EIRGVTRVTAV 1177
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G+ H +AL D ++WGAN GQLG G +R P ++ V
Sbjct: 1178 STGAWHSLALR--------LDGTVWAWGANGFGQLGDGTTTARAVPVPVQGLRD-----V 1224
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ G +H+ + + WT+G GQLG GT++S +P QV +L
Sbjct: 1225 VAIAAGGYHSVAVRS--------DGTVWTWGYNTFGQLGDGTSESRALPVQVHKLEG--- 1273
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+ +V G H+ + + G V WG + L D +P+ +
Sbjct: 1274 VQAVTGGDHHSLALHADGTVSGWGHNA------SGQLGDGSRTDRYTPVRLK-------D 1320
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+V GAAHTV + DG +W+WG G LG G T
Sbjct: 1321 VDGLTEVRAGAAHTVALGKDG-TVWTWGDNAHGQLGDGVT 1359
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 116/291 (39%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S I ++ G +LA+ G +W WG+ + G S + F P V + G +
Sbjct: 616 LSDIRNISVGSAHALAVRGDGTVWAWGDN---NEGQLGDGSWMDRFAPVQVRNLTG--IT 670
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V+ G H +AL + D +WG+N GQLG G SR+ P +I +
Sbjct: 671 AVSGGRSHSLALHA--------DGTVRAWGSNGYGQLGDGTLTSRVLPSVIPGLS----- 717
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ + G H L K +G GQLG G + P QV+ + +
Sbjct: 718 GIQALHPGHLHVLALHADKTLRG--------WGYNRFGQLGLGAAGWSARPVQVRGIGRV 769
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
L G H +V + G V +WG NAS + G ++ G
Sbjct: 770 ERLA---AGRAHALLVRADGSVVAWGA--------NASGQLGDGGTTHGARAVTVRGVSC 818
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ VA G H++++ DG +W+WG + G LG G T AP V
Sbjct: 819 AR-----SVASGGQHSLVLACDG-TVWTWGENQRGQLGDGTTSARVAPGRV 863
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 85/209 (40%), Gaps = 35/209 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++++ +V G SLA+ G +W WG L D +T + P PV
Sbjct: 1171 VTRVTAVSTGAWHSLALRLDGTVWAWGANGFGQLGDGTT------TARAVPVPVQGL--R 1222
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +A G H VA+ S D ++WG N GQLG G ESR P +
Sbjct: 1223 DVVAIAAGGYHSVAVRS--------DGTVWTWGYNTFGQLGDGTSESRALPVQVHKLE-- 1272
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V VT G H+ L + +G +GQLG G+ P ++K++
Sbjct: 1273 ---GVQAVTGGDHHSLAL--------HADGTVSGWGHNASGQLGDGSRTDRYTPVRLKDV 1321
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
L V G HT + G VW+WG
Sbjct: 1322 DG---LTEVRAGAAHTVALGKDGTVWTWG 1347
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 116/289 (40%), Gaps = 40/289 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + + G +LA+ G +W WG S G S P+ V G V
Sbjct: 916 LSDVMVIALGESHALAVGEDGTVWAWGANA---SGQLGDGGETPSLLPARVKGLEG--VG 970
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G +A+ +D ++WGAN +GQLG G +SR P + +
Sbjct: 971 SVAAGRAFSLAVR--------DDGTAWAWGANESGQLGDGSNQSRRVPHRVASVK----- 1017
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKELPQ 179
+ V+ G+ H L + W +G GQLG GT+ + + P++V EL
Sbjct: 1018 GLRAVSAGAHHAMALGE--------DGAVWAWGDNTLGQLGDGTSAFTVMWPQRVAELSD 1069
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ SV G + V+ G +SWG + L + G +SP +
Sbjct: 1070 ---VESVAAGEQFSVAVAHDGTAFSWGSNE------YGQLGDGKTGPRLSPAEVK---IG 1117
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
G K + V V H V + DG L +WG +G LG G T +P
Sbjct: 1118 GSKARTVVTVGAWGQHAVALMADG-TLQAWGDNATGQLGDGTTTRRSSP 1165
>gi|426378407|ref|XP_004055918.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
HERC2-like, partial [Gorilla gorilla gorilla]
Length = 4586
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 2803 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 2859
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 2860 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 2908
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 2909 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 2961
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 2962 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3011
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3012 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3055
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 116/243 (47%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V VVK+A S+ H +AL + GE Y SWG + +LG GD
Sbjct: 458 TLVPQLVQGLASRNVVKIAAHSDGHHYLALAATGEVY--------SWGCGDGRRLGHGDT 509
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 510 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 561
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 562 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 614
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 615 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 666
Query: 278 GTG 280
G G
Sbjct: 667 GHG 669
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 3795 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 3851
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 3852 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 3900
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 3901 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGV 3951
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 3952 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 3999
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4000 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4047
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2750 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 2803
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 2804 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 2852
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 2853 IRDIACGSSHSAALTS--------SGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 2903
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWG----MEKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 2904 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 2954
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 2955 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3003
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 2852 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 2908
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 2909 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 2959
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 2960 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3010
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3011 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3059
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3060 GQKITRVACGSSHSV 3074
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 3844 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 3897
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 3898 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 3948
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 3949 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 3999
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4000 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4050
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4051 -QGKKVN---RVACGSAHTL 4066
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 120/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + ++A+
Sbjct: 3697 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLLAVT 3753
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 3754 ADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 3804
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 3805 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 3855
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 3856 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 3904
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 3905 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 3932
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 88/227 (38%), Gaps = 35/227 (15%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 589 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 645
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 646 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 694
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 695 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 743
Query: 187 DCGLFHTSVVSSAGDVWSWGMEKGLGLC-PNASLTRNEAGDAISPIL 232
CG +S SS + W M GLC P R+ + + +L
Sbjct: 744 ACGPAQSSAGSSX---YEWSM----GLCVPQGGDIRSTTSEQLDLLL 783
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ +LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 494 YSWGCGDGRRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 553
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G K + VACG+ A T+ VT++G
Sbjct: 554 RGN------YGRLGHGSSEDEAIPMLVAGL-----KGLKVIDVACGSGDAQTLAVTENG- 601
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 602 QVWSWGDGDYGKLGRGGSDGCKTPKLI 628
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 91/209 (43%), Gaps = 30/209 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P E P + G T L +
Sbjct: 3707 YGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLI----GGEQTLLAV-------TAD 3755
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T+S P ++ + Q+V++ V+V+ G H +SS G+V+S
Sbjct: 3756 GKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCLALSSEGEVYS 3814
Query: 205 WG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG E G LG + R +++ I + V VA G AH+ VT
Sbjct: 3815 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAAGGAHSACVTAA 3861
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G L++WG+GR G LG + D P +V
Sbjct: 3862 G-DLYTWGKGRYGRLGHSDSEDQLKPKLV 3889
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 11/125 (8%)
Query: 169 LVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDA 227
LVP+ V+ L + V ++ H +++ G+V+SWG G L ++ E
Sbjct: 459 LVPQLVQGLASRNVVKIAAHSDGHHYLALAATGEVYSWGCGDGRRLGHGDTVPLEE---- 514
Query: 228 ISPILISG-NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFF 286
P +IS +G K V +ACG+ ++ +T +G +L++WGRG G LG G + D
Sbjct: 515 --PKVISAFSGKQAGKHV--VHIACGSTYSAAITAEG-ELYTWGRGNYGRLGHGSSEDEA 569
Query: 287 APAIV 291
P +V
Sbjct: 570 IPMLV 574
>gi|380817670|gb|AFE80709.1| E3 ubiquitin-protein ligase HERC2 [Macaca mulatta]
Length = 4829
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3046 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3102
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3103 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3151
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3152 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3204
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3205 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3254
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3255 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3298
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 481 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 532
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 533 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 584
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 585 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 637
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 638 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 689
Query: 278 GTG 280
G G
Sbjct: 690 GHG 692
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4038 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4094
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 4095 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 4143
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4144 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4194
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4195 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4242
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4243 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4290
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2993 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 3046
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3047 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3095
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3096 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3146
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3147 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3197
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3198 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3246
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3095 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3151
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3152 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3202
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3203 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3253
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3254 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3302
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3303 GQKITRVACGSSHSV 3317
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4087 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4140
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4141 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4191
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4192 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4242
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4243 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4293
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4294 -QGKKVN---RVACGSAHTL 4309
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3940 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 3996
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 3997 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4047
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4048 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4098
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 4099 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 4147
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4148 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4175
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 612 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 668
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 669 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 717
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 718 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 766
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 767 ACGPAQSFAWSSCSE-WSIGLR 787
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 517 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 576
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 577 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 624
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 625 QVWSWGDGDYGKLGRGGSDGCKTPKLI 651
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3950 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3987
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3988 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4046
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4047 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4093
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4094 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4132
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 466 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 524
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 525 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 577
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 578 GNYGRLGHGSSEDEAIPMLV 597
>gi|148689921|gb|EDL21868.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
RCC1 (CHC1)-like domain (RLD) 2, isoform CRA_a [Mus
musculus]
Length = 4902
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3118 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3174
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3175 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3223
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3224 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3276
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3277 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3326
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3327 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3370
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 116/242 (47%), Gaps = 38/242 (15%)
Query: 46 FTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 551 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDTV 602
Query: 104 SRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
PK+I F+ + + V + CGS ++A +T E +T+G G G+LGH
Sbjct: 603 PLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLGH 654
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
G+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 655 GSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KLG 707
Query: 221 RNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
R + +P LI K Q D ++V CG+ ++ +T DG +++SWG+G + LG
Sbjct: 708 RGGSDGCKTPKLIE-------KLQDLDVIKVRCGSQFSIALTKDG-QVYSWGKGDNQRLG 759
Query: 279 TG 280
G
Sbjct: 760 HG 761
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4111 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4167
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 4168 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VIDI 4216
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4217 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4267
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4268 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4315
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4316 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4363
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 130/296 (43%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSP--VWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G G + S P P + + V KVA
Sbjct: 3065 AGGSKSLFAVTVEGKVYSCGE------ATNGRLGLGMSSGTVPIPRQITALSSYVVKKVA 3118
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3119 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3167
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3168 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3218
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3219 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3269
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3270 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3318
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3167 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3223
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3224 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3274
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3275 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3325
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3326 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3374
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3375 GQKITRVACGSSHSV 3389
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4160 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4213
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4214 IDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4264
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4265 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4315
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4316 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4366
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4367 -QGKKVN---RVACGSAHTL 4382
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 4013 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4069
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4070 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4120
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4121 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4171
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H + +ACG+
Sbjct: 4172 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVIDIACGS 4220
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4221 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4248
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + V+KV CGS+
Sbjct: 681 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQF 737
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 738 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 786
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 787 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPTA-LPGLDSKHIVGI 835
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 836 ACGPAQSFAWSSCSE-WSIGLR 856
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 586 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 645
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 646 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 693
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 694 QVWSWGDGDYGKLGRGGSDGCKTPKLI 720
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 4023 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 4060
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 4061 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4119
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4120 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4166
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4167 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4205
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 535 LSRNGRVYTQAYNSDMLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 593
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 594 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 646
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 647 GNYGRLGHGSSEDEAIPMLV 666
>gi|380787033|gb|AFE65392.1| E3 ubiquitin-protein ligase HERC2 [Macaca mulatta]
Length = 4834
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3051 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3107
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3108 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3156
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3157 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3209
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3210 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3259
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3260 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3303
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 481 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 532
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 533 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 584
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 585 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 637
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 638 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 689
Query: 278 GTG 280
G G
Sbjct: 690 GHG 692
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4043 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4099
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 4100 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 4148
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4149 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4199
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4200 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4247
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4248 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4295
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2998 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 3051
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3052 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3100
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3101 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3151
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3152 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3202
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3203 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3251
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3100 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3156
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3157 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3207
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3208 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3258
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3259 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3307
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3308 GQKITRVACGSSHSV 3322
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4092 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4145
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4146 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4196
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4197 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4247
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4248 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4298
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4299 -QGKKVN---RVACGSAHTL 4314
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3945 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4001
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4002 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4052
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4053 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4103
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 4104 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 4152
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4153 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4180
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 612 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 668
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 669 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 717
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 718 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 766
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 767 ACGPAQSFAWSSCSE-WSIGLR 787
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 517 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 576
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 577 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 624
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 625 QVWSWGDGDYGKLGRGGSDGCKTPKLI 651
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3955 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3992
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3993 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4051
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4052 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4098
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4099 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4137
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 466 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 524
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 525 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 577
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 578 GNYGRLGHGSSEDEAIPMLV 597
>gi|449275747|gb|EMC84515.1| putative E3 ubiquitin-protein ligase HERC2 [Columba livia]
Length = 4840
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 133/290 (45%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3055 AVHSGGRHAMALTVDGKVFSWGEG---DDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3111
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE Y+WG G+LG GD ++L+PK+++ V +V
Sbjct: 3112 SSHSAAITSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3160
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3161 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3213
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ +G VW+WG KG LG + + + + + G G
Sbjct: 3214 IECGAQFSLALTKSGVVWTWG--KGDYFRLGHGTDVHVRKPQVVE----------GLRGK 3261
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3262 KI---VHVAVGALHCLAVTDTG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3307
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 129/291 (44%), Gaps = 42/291 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4048 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4104
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ ++WG G+LG GD E +L+PK++E + V ++
Sbjct: 4105 GAHSACITAAGD--------LFTWGKGRYGRLGHGDSEDQLKPKLVEALQG---YRVIDI 4153
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4154 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4204
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG---LGLCPNASLTRNEAGDAISPILISGNGPHG 240
V V+CG + ++ +G V++W + + LG + + R G G
Sbjct: 4205 VKVECGSQFSVALTKSGAVYTWQVFRDYHRLGHGSDDHVRRPR----------QVQGLQG 4254
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4255 KKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4301
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE + SWG + G+LG GD
Sbjct: 482 TLGPQLVQSLASRNIVKIAAHSDGHHYLALSANGEVF--------SWGCGDGGRLGHGDT 533
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I + + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 534 VPLEEPKMISALSGKQAGKHVVHIACGSTYSAAITA--------EGELYTWGRGNYGRLG 585
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 586 HGSSEDQTIPMLVTGL-KGLKVIDVSCGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 638
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG ++++WG+G + L
Sbjct: 639 GRGGSDGCKTPKLIE-------KLQDLDIVKVRCGSQFSIALTKDG-QVYTWGKGDNQRL 690
Query: 278 GTG 280
G G
Sbjct: 691 GHG 693
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 112/255 (43%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S AI ++G L+ WG L + G + P V GH V++V
Sbjct: 3104 RIRDIACGSSHSAAITSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3160
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3161 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3211
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHGT P+ V+ L +
Sbjct: 3212 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGTDVHVRKPQVVEGL-RGKK 3262
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ G V++WG + G N + T N P L+ G +
Sbjct: 3263 IVHVAVGALHCLAVTDTGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3311
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3312 GQKITRVACGSSHSV 3326
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 3002 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSNYVVKKVA 3055
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H +AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3056 VHSGGRHAMALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3104
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A +T +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3105 IRDIACGSSHSAAITS--------SGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3155
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3156 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3206
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3207 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGTDVHVRKPQVV 3255
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 25/206 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+ + G S AI G L+ WG + G S P V G V+ V
Sbjct: 553 HVVHIACGSTYSAAITAEGELYTWGRG---NYGRLGHGSSEDQTIPMLVTGLKGLKVIDV 609
Query: 63 ACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+CGS +A+ G+ + SWG + G+LG G + PK+IE QD
Sbjct: 610 SCGSGDAQTLAVTENGQVW--------SWGDGDYGKLGRGGSDGCKTPKLIEKL-QD--L 658
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ +V CGS + LT + +T+G G+N +LGHGT + P+ ++ L +
Sbjct: 659 DIVKVRCGSQFSIALTK--------DGQVYTWGKGDNQRLGHGTEEHVRYPKLLEGL-KG 709
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWG 206
++ V G H ++ +V SWG
Sbjct: 710 KKVIDVAAGSTHCLALTEDSEVHSWG 735
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 107/258 (41%), Gaps = 37/258 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V AGG S I AG L+ WG G P V G+ V+ +
Sbjct: 4097 EVVDVAAGGAHSACITAAGDLFTWGKG---RYGRLGHGDSEDQLKPKLVEALQGYRVIDI 4153
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L +D +SWG + G+LG G + P I++ + V
Sbjct: 4154 ACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TGLGV 4204
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN-GQLGHGTTQSALVPEQVKELPQYV 181
+V CGS + LT +T+ + + +LGHG+ P QV+ L Q
Sbjct: 4205 VKVECGSQFSVALTK--------SGAVYTWQVFRDYHRLGHGSDDHVRRPRQVQGL-QGK 4255
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4256 KVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL--Q 4305
Query: 240 GPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4306 GKKIN---RVACGSAHTL 4320
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 44/238 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV+VAC + + L G Y A N+ LG P+++++ +
Sbjct: 454 VVQVACAEKRFLILSRNGRVYTQ---------AYNSDTLG---------PQLVQSLASRN 495
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ + G + AL + + +++G G+ G+LGHG T P+ + L
Sbjct: 496 IVKIAAHSDGHHYLALSANGE---------VFSWGCGDGGRLGHGDTVPLEEPKMISALS 546
Query: 179 QYV---YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
++V + CG +++ +++ G++++WG L + D P+L++G
Sbjct: 547 GKQAGKHVVHIACGSTYSAAITAEGELYTWGRGN------YGRLGHGSSEDQTIPMLVTG 600
Query: 236 NGPHGPKFQDPVQVACGA--AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K D V+CG+ A T+ VT++G ++WSWG G G LG G + P ++
Sbjct: 601 L--KGLKVID---VSCGSGDAQTLAVTENG-QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3950 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4006
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4007 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4057
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4058 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4108
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ +++AGD+++WG + L ++ D + P L+ G + D +ACG+
Sbjct: 4109 ACITAAGDLFTWGKGR------YGRLGHGDSEDQLKPKLV--EALQGYRVID---IACGS 4157
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4158 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4185
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 93/220 (42%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3960 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3997
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3998 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4056
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4057 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4103
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ +T G L++WG+GR G LG G + D P +V
Sbjct: 4104 GGAHSACITAAG-DLFTWGKGRYGRLGHGDSEDQLKPKLV 4142
>gi|298713261|emb|CBJ26957.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 530
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 114/255 (44%), Gaps = 42/255 (16%)
Query: 39 GFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG 98
G+SL P PV F G+ V KVAC H V + +D +++G N GQLG
Sbjct: 148 GYSL-----PRPVAGFAGYRVTKVACSYSHTVVVT--------DDDRTWTFGGNGYGQLG 194
Query: 99 LGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENG 158
GD SR P + F V V CG +HT + + ++FG ++G
Sbjct: 195 HGDHSSRSAPAALACFQG---LGVLSVACGVYHTVV--------SVASGGLYSFGKNDHG 243
Query: 159 QLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPN 216
QLG +S P Q + V ++ CG +HT +S AG+V ++G LGL
Sbjct: 244 QLGLEGGESRFTPVQHRACTSVVEQLA--CGYYHTVALSRAGEVVAFGRNDYGQLGLGHR 301
Query: 217 ASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGV 276
S + ++ + I +QVACG+ HT+ + D+G +++ +GR G
Sbjct: 302 ESTWQGGQVPDLAGLRI-------------IQVACGSYHTISLDDEG-RVYPFGRNNHGQ 347
Query: 277 LGTGKTIDFFAPAIV 291
LGTG D P V
Sbjct: 348 LGTGTREDACRPCFV 362
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 88/191 (46%), Gaps = 37/191 (19%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV-KV 62
+ SV +GG+ S ++ G L + EGG S FTP V +VV ++
Sbjct: 226 VVSVASGGLYSFGKNDHGQLGL-----------EGG---ESRFTP--VQHRACTSVVEQL 269
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG H VAL AGE ++G N+ GQLGLG RES + + + +
Sbjct: 270 ACGYYHTVALSRAGEVV--------AFGRNDYGQLGLGHRESTWQGGQVPDL---AGLRI 318
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CGS+HT L R + FG +GQLG GT + A P V+ L Q +
Sbjct: 319 IQVACGSYHTISLDDEGR--------VYPFGRNNHGQLGTGTREDACRPCFVEGLSQ-SF 369
Query: 183 LVSVDCGLFHT 193
+ V G +HT
Sbjct: 370 VCQVAAGFYHT 380
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 14/130 (10%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
+ G ++A+ AG + +G D G S++ V D G +++VACGS
Sbjct: 269 LACGYYHTVALSRAGEVVAFGR---NDYGQLGLGHRESTWQGGQVPDLAGLRIIQVACGS 325
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
H ++L G Y +G NN+GQLG G RE RP +E +Q V +V
Sbjct: 326 YHTISLDDEGRVYP--------FGRNNHGQLGTGTREDACRPCFVEGLSQS---FVCQVA 374
Query: 127 CGSFHTALLT 136
G +HT LT
Sbjct: 375 AGFYHTLCLT 384
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 112/299 (37%), Gaps = 98/299 (32%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD----- 101
TP+ G +V V G+E L + GE YS G N+ GQ G+G+
Sbjct: 34 TPTLSQTSRGKDIVGVTAGNELTAVLTNTGEV--------YSCGYNSEGQCGIGEIDETV 85
Query: 102 ------------RESRLRP---------------------------------------KI 110
RE RP ++
Sbjct: 86 PEMVPSLTKVTLREPSFRPAGRVSLVHSGNGSEHLVVVTEEGELQTCGRNNSGQLGHGEV 145
Query: 111 IETFNQDSPWA------VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
+ ++ P A V +V C HT ++T R WTFG GQLGHG
Sbjct: 146 GKGYSLPRPVAGFAGYRVTKVACSYSHTVVVTDDDRT--------WTFGGNGYGQLGHGD 197
Query: 165 TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRN 222
S P + Q + ++SV CG++HT V ++G ++S+G LGL
Sbjct: 198 HSSRSAPAALACF-QGLGVLSVACGVYHTVVSVASGGLYSFGKNDHGQLGL--------- 247
Query: 223 EAGDA-ISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
E G++ +P+ H Q+ACG HTV ++ G ++ ++GR G LG G
Sbjct: 248 EGGESRFTPV------QHRACTSVVEQLACGYYHTVALSRAG-EVVAFGRNDYGQLGLG 299
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 90/218 (41%), Gaps = 37/218 (16%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y +G N G+LGLGD R P + +T + VT G+ TA+LT+
Sbjct: 14 YGFGQNACGELGLGDTLERHTPTLSQTSRGKD---IVGVTAGNELTAVLTNTGE------ 64
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKEL-------PQY-----VYLVSVDCGLFHTS 194
++ G GQ G G VPE V L P + V LV G H
Sbjct: 65 --VYSCGYNSEGQCGIGEIDET-VPEMVPSLTKVTLREPSFRPAGRVSLVHSGNGSEHLV 121
Query: 195 VVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS-PILISGNGPHGPKFQDPVQVACGA 253
VV+ G++ + G + L E G S P ++G + +VAC
Sbjct: 122 VVTEEGELQTCGRNN------SGQLGHGEVGKGYSLPRPVAGFAGY-----RVTKVACSY 170
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+HTV+VTDD + W++G G LG G APA +
Sbjct: 171 SHTVVVTDDD-RTWTFGGNGYGQLGHGDHSSRSAPAAL 207
>gi|410349247|gb|JAA41227.1| hect domain and RLD 2 [Pan troglodytes]
Length = 4834
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3051 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3107
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3108 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3156
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3157 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3209
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3210 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3259
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3260 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3303
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 481 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 532
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 533 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 584
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 585 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 637
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 638 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 689
Query: 278 GTG 280
G G
Sbjct: 690 GHG 692
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4043 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4099
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 4100 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 4148
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4149 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4199
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4200 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4247
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4248 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4295
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2998 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 3051
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3052 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3100
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3101 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3151
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3152 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3202
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3203 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3251
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3100 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3156
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3157 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3207
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3208 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3258
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3259 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3307
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3308 GQKITRVACGSSHSV 3322
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4092 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4145
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4146 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4196
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4197 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4247
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4248 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4298
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4299 -QGKKVN---RVACGSAHTL 4314
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3945 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4001
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4002 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4052
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4053 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4103
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 4104 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 4152
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4153 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4180
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 612 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 668
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 669 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 717
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 718 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 766
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 767 ACGPAQSFAWSSCSE-WSIGLR 787
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 517 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 576
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 577 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 624
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 625 QVWSWGDGDYGKLGRGGSDGCKTPKLI 651
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3955 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3992
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3993 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4051
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4052 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4098
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4099 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4137
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 466 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 524
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 525 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 577
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 578 GNYGRLGHGSSEDEAIPMLV 597
>gi|410265952|gb|JAA20942.1| hect domain and RLD 2 [Pan troglodytes]
Length = 4834
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3051 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3107
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3108 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3156
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3157 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3209
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3210 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3259
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3260 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3303
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 481 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 532
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 533 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 584
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 585 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 637
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 638 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 689
Query: 278 GTG 280
G G
Sbjct: 690 GHG 692
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4043 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4099
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 4100 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 4148
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4149 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4199
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4200 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4247
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4248 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4295
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2998 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 3051
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3052 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3100
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3101 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3151
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3152 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3202
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3203 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3251
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3100 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3156
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3157 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3207
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3208 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3258
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3259 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3307
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3308 GQKITRVACGSSHSV 3322
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4092 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4145
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4146 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4196
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4197 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4247
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4248 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4298
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4299 -QGKKVN---RVACGSAHTL 4314
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3945 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4001
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4002 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4052
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4053 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4103
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 4104 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 4152
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4153 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4180
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 612 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 668
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 669 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 717
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 718 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 766
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 767 ACGPAQSFAWSSCSE-WSIGLR 787
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 517 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 576
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 577 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 624
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 625 QVWSWGDGDYGKLGRGGSDGCKTPKLI 651
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3955 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3992
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3993 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4051
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4052 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4098
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4099 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4137
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 466 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 524
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 525 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 577
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 578 GNYGRLGHGSSEDEAIPMLV 597
>gi|297296008|ref|XP_001109429.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Macaca
mulatta]
Length = 4840
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3051 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3107
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3108 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3156
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3157 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3209
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3210 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3259
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3260 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3303
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 481 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 532
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 533 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 584
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 585 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 637
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 638 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 689
Query: 278 GTG 280
G G
Sbjct: 690 GHG 692
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4074 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4130
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 4131 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 4179
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4180 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4230
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4231 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4278
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4279 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4326
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2998 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 3051
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3052 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3100
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3101 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3151
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWG----MEKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3152 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3202
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3203 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3251
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3100 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3156
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3157 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3207
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3208 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3258
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3259 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3307
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3308 GQKITRVACGSSHSV 3322
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4123 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4176
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4177 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4227
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4228 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4278
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4279 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4329
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4330 -QGKKVN---RVACGSAHTL 4345
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3976 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4032
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4033 ADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4083
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4084 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4134
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 4135 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 4183
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4184 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4211
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 612 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 668
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 669 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 717
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 718 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 766
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 767 ACGPAQSFAWSSCSE-WSIGLR 787
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 517 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 576
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 577 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 624
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 625 QVWSWGDGDYGKLGRGGSDGCKTPKLI 651
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3986 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 4023
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 4024 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4082
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4083 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4129
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4130 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4168
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 466 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 524
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 525 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 577
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 578 GNYGRLGHGSSEDEAIPMLV 597
>gi|4079809|gb|AAD08657.1| HERC2 [Homo sapiens]
Length = 4834
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3051 AVHSGGRHATALTVDGKVFSWGEG---DDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3107
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y+WG G+LG GD ++L+PK+++ V +V
Sbjct: 3108 SSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3156
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3157 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3209
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3210 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3259
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3260 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3303
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 481 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 532
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 533 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 584
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 585 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 637
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 638 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 689
Query: 278 GTG 280
G G
Sbjct: 690 GHG 692
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4043 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4099
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y+WG G+LG D E +L+PK++E V ++
Sbjct: 4100 GAHSACVTAAGD--------LYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 4148
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4149 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGV 4199
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4200 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4247
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4248 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4295
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2998 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 3051
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3052 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3100
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3101 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3151
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3152 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3202
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3203 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3251
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3100 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3156
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3157 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3207
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3208 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3258
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3259 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3307
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3308 GQKITRVACGSSHSV 3322
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4092 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4145
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4146 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4196
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4197 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4247
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4248 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4298
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4299 -QGKKVN---RVACGSAHTL 4314
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3945 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4001
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4002 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4052
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4053 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4103
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 4104 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 4152
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4153 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4180
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 612 SGDAQTLAVTENGQVWSWGDG---DYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 668
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 669 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 717
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 718 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 766
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 767 ACGPAQSFAWSSCSE-WSIGLR 787
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 517 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 576
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 577 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 624
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 625 QVWSWGDGDYGKLGRGGSDGCKTPKLI 651
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3955 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3992
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3993 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4051
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4052 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4098
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4099 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4137
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 466 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 524
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 525 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 577
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 578 GNYGRLGHGSSEDEAIPMLV 597
>gi|379719198|ref|YP_005311329.1| protein ChiA12 [Paenibacillus mucilaginosus 3016]
gi|378567870|gb|AFC28180.1| ChiA12 [Paenibacillus mucilaginosus 3016]
Length = 1205
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 120/290 (41%), Gaps = 46/290 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S I G +LA++ G +W WG L + ST G +P+PV H+V
Sbjct: 39 SGIRMAAGGESHTLALNANGTVWAWGGGQLGNGSTTG--------SPAPVQVQDLHSVEA 90
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+A G H +A+ S G ++WG N GQLG G R P +E +
Sbjct: 91 IAAGGSHNLAIKSDG--------TVWAWGFNGYGQLGDGSTTGRNTPVQVEGLR-----S 137
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ H+ L + W +G E GQLG G+ P +VK L
Sbjct: 138 IVGAAAHYDHSLALKS--------DGTVWAWGRNEYGQLGDGSKTDRHTPVRVKGLDS-- 187
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+V++ G ++ V S G VW+WG + G N S T++ A P+ + G
Sbjct: 188 -VVAISSGFGYSLAVKSDGTVWAWGKNE-YGQLGNGSTTQSSA-----PVQVQG------ 234
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
VA G H + + DG +WSWG +G LG G +D + P V
Sbjct: 235 -LHSVTAVASGDYHNLAIKRDG-TVWSWGPNLAGQLGDGSDMDRYTPVQV 282
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 116/274 (42%), Gaps = 49/274 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ + ++ AGG +LAI + G +W WG L D ST G +PV
Sbjct: 85 LHSVEAIAAGGSHNLAIKSDGTVWAWGFNGYGQLGDGSTTG--------RNTPVQVEGLR 136
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
++V A +H +AL S G ++WG N GQLG G + R P ++ +
Sbjct: 137 SIVGAAAHYDHSLALKSDG--------TVWAWGRNEYGQLGDGSKTDRHTPVRVKGLD-- 186
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+V ++ G F +L + W +G E GQLG+G+T + P QV+ L
Sbjct: 187 ---SVVAISSG-FGYSLAVKS-------DGTVWAWGKNEYGQLGNGSTTQSSAPVQVQGL 235
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ +V G +H + G VWSWG L + + R +P+ + G
Sbjct: 236 HS---VTAVASGDYHNLAIKRDGTVWSWGPNLAGQLGDGSDMDR------YTPVQVEG-- 284
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
F V V G H++ + DG +W+WG
Sbjct: 285 -----FSSAVDVDAGFGHSLALKSDG-TVWAWGN 312
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 99/243 (40%), Gaps = 40/243 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + ++ +G SLA+ + G +W WG + G S S P V H+V
Sbjct: 185 LDSVVAISSGFGYSLAVKSDGTVWAWGKN---EYGQLGNGSTTQSSAPVQVQGL--HSVT 239
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H +A+ D +SWG N GQLG G R P +E F+
Sbjct: 240 AVASGDYHNLAI--------KRDGTVWSWGPNLAGQLGDGSDMDRYTPVQVEGFS----- 286
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ +V G H+ L + W +G + + G G++ P QV+EL
Sbjct: 287 SAVDVDAGFGHSLALKS--------DGTVWAWGNYQFNEWGFGSS----TPVQVQELDS- 333
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG-NGPH 239
+V + G H+ V + G VW+WG L S R ++PI + G GP
Sbjct: 334 --VVDIAAGTQHSLAVRNDGTVWAWGKNDNGQLGDGTSTAR------LTPIKVQGFGGPE 385
Query: 240 GPK 242
P+
Sbjct: 386 WPE 388
>gi|354489070|ref|XP_003506687.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
HERC2-like [Cricetulus griseus]
Length = 4836
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3052 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3108
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3109 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3157
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3158 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3210
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3211 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3260
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3261 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3304
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 116/242 (47%), Gaps = 38/242 (15%)
Query: 46 FTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 483 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDTV 534
Query: 104 SRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
PK+I F+ + + V + CGS ++A +T E +T+G G G+LGH
Sbjct: 535 PLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLGH 586
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
G+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 587 GSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KLG 639
Query: 221 RNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
R + +P LI K Q D ++V CG+ ++ +T DG +++SWG+G + LG
Sbjct: 640 RGGSDGCKTPKLIE-------KLQDLDVIKVRCGSQFSIALTKDG-QVYSWGKGDNQRLG 691
Query: 279 TG 280
G
Sbjct: 692 HG 693
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4045 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4101
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 4102 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VIDI 4150
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4151 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGV 4201
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4202 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4249
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4250 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4297
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 130/296 (43%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSP--VWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G G + S P P + + V KVA
Sbjct: 2999 AGGSKSLFAVTVEGKVYSCGE------ATNGRLGLGMSSGTVPIPRQITALSSYVVKKVA 3052
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3053 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3101
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3102 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3152
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3153 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3203
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3204 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3252
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3101 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3157
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3158 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3208
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3209 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3259
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3260 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3308
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3309 GQKITRVACGSSHSV 3323
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4094 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4147
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4148 IDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4198
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4199 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4249
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4250 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4300
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4301 -QGKKVN---RVACGSAHTL 4316
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3947 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4003
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4004 ADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4054
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4055 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4105
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H + +ACG+
Sbjct: 4106 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVIDIACGS 4154
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4155 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4182
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + V+KV CGS+
Sbjct: 613 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQF 669
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 670 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 718
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 719 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPTA-LPGLDTKHIVGI 767
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 768 ACGPAQSFAWSSCXE-WSIGLR 788
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 518 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 577
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 578 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 625
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 626 QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3957 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3994
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3995 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4053
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4054 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4100
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4101 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4139
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 467 LSRNGRVYTQAYNSDMLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 525
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 526 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 578
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 579 GNYGRLGHGSSEDEAIPMLV 598
>gi|224043006|ref|XP_002197493.1| PREDICTED: E3 ubiquitin-protein ligase HERC2 [Taeniopygia guttata]
Length = 4839
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 133/290 (45%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3055 AVHSGGRHAMALTVDGKVFSWGEG---DDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3111
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE Y+WG G+LG GD ++L+PK+++ V +V
Sbjct: 3112 SSHSAAITSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3160
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3161 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3213
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ +G VW+WG KG LG + + + + + G G
Sbjct: 3214 IECGAQFSLALTKSGVVWTWG--KGDYFRLGHGTDVHVRKPQVVE----------GLRGK 3261
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3262 KI---VHVAVGALHCLAVTDTG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3307
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 129/292 (44%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ G ++ WG + G + P + G VV +A G
Sbjct: 4048 AVNSGGKHCLALSFEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDIAAG 4104
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ ++WG G+LG GD E +L+PK++E + V ++
Sbjct: 4105 GAHSACITAAGD--------LFTWGKGRYGRLGHGDSEDQLKPKLVEALQG---YRVIDI 4153
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4154 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4204
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4205 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4252
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4253 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4300
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE + SWG + G+LG GD
Sbjct: 482 TLGPQLVQSLASRNIVKIAAHSDGHHYLALSANGEVF--------SWGCGDGGRLGHGDT 533
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I + + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 534 VPLEEPKMISALSGKQAGKHVVHIACGSTYSAAITA--------EGELYTWGRGNYGRLG 585
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 586 HGSSEDQTIPMLVTGL-KGLKVIDVSCGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 638
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG ++++WG+G + L
Sbjct: 639 GRGGSDGCKTPKLIE-------KLQDLDIVKVRCGSQFSIALTKDG-QVYTWGKGDNQRL 690
Query: 278 GTG 280
G G
Sbjct: 691 GHG 693
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 112/255 (43%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S AI ++G L+ WG L + G + P V GH V++V
Sbjct: 3104 RIRDIACGSSHSAAITSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3160
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3161 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3211
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHGT P+ V+ L +
Sbjct: 3212 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGTDVHVRKPQVVEGL-RGKK 3262
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ G V++WG + G N + T N P L+ G +
Sbjct: 3263 IVHVAVGALHCLAVTDTGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3311
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3312 GQKITRVACGSSHSV 3326
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 3002 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSNYVVKKVA 3055
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H +AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3056 VHSGGRHAMALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3104
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A +T +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3105 IRDIACGSSHSAAITSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3155
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3156 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3206
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3207 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGTDVHVRKPQVV 3255
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 108/257 (42%), Gaps = 36/257 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + AGG S I AG L+ WG G P V G+ V+ +
Sbjct: 4097 EVVDIAAGGAHSACITAAGDLFTWGKG---RYGRLGHGDSEDQLKPKLVEALQGYRVIDI 4153
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L +D +SWG + G+LG G + P I++ + V
Sbjct: 4154 ACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TGLGV 4204
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4205 VKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-QGKK 4255
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++++ G H + G+V++WG E LG ++ R P L++ G
Sbjct: 4256 VIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL--QG 4305
Query: 241 PKFQDPVQVACGAAHTV 257
K +VACG+AHT+
Sbjct: 4306 KKIN---RVACGSAHTL 4319
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 25/206 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+ + G S AI G L+ WG + G S P V G V+ V
Sbjct: 553 HVVHIACGSTYSAAITAEGELYTWGRG---NYGRLGHGSSEDQTIPMLVTGLKGLKVIDV 609
Query: 63 ACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+CGS +A+ G+ + SWG + G+LG G + PK+IE QD
Sbjct: 610 SCGSGDAQTLAVTENGQVW--------SWGDGDYGKLGRGGSDGCKTPKLIEKL-QD--L 658
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ +V CGS + LT + +T+G G+N +LGHGT + P+ ++ L +
Sbjct: 659 DIVKVRCGSQFSIALTK--------DGQVYTWGKGDNQRLGHGTEEHVRYPKLLEGL-KG 709
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWG 206
++ V G H ++ +V SWG
Sbjct: 710 KKVIDVAAGSTHCLALTEDSEVHSWG 735
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3950 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4006
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4007 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4057
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V + G H+
Sbjct: 4058 ALS--------FEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDIAAGGAHS 4108
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ +++AGD+++WG + L ++ D + P L+ G + D +ACG+
Sbjct: 4109 ACITAAGDLFTWGKGR------YGRLGHGDSEDQLKPKLV--EALQGYRVID---IACGS 4157
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4158 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4185
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 107/238 (44%), Gaps = 44/238 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VAC + + L G Y A N+ LG P+++++ +
Sbjct: 454 VMQVACAEKRFLILSRNGRVYTQ---------AYNSDTLG---------PQLVQSLASRN 495
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ + G + AL + + +++G G+ G+LGHG T P+ + L
Sbjct: 496 IVKIAAHSDGHHYLALSANGE---------VFSWGCGDGGRLGHGDTVPLEEPKMISALS 546
Query: 179 QYV---YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
++V + CG +++ +++ G++++WG L + D P+L++G
Sbjct: 547 GKQAGKHVVHIACGSTYSAAITAEGELYTWGRGN------YGRLGHGSSEDQTIPMLVTG 600
Query: 236 NGPHGPKFQDPVQVACGA--AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K D V+CG+ A T+ VT++G ++WSWG G G LG G + P ++
Sbjct: 601 L--KGLKVID---VSCGSGDAQTLAVTENG-QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG G ++++ C + T RP ++
Sbjct: 3960 YGWGHNHRGQLG-GIEGAKVK---------------VPTPCEALATL------RPVQLIG 3997
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3998 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4056
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+S G+V+SWG E G LG + R +++ I + V +A
Sbjct: 4057 LALSFEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDIAA 4103
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ +T G L++WG+GR G LG G + D P +V
Sbjct: 4104 GGAHSACITAAG-DLFTWGKGRYGRLGHGDSEDQLKPKLV 4142
>gi|148689922|gb|EDL21869.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
RCC1 (CHC1)-like domain (RLD) 2, isoform CRA_b [Mus
musculus]
Length = 4841
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3057 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3113
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3114 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3162
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3163 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3215
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3216 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3265
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3266 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3309
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 116/242 (47%), Gaps = 38/242 (15%)
Query: 46 FTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 488 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDTV 539
Query: 104 SRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
PK+I F+ + + V + CGS ++A +T E +T+G G G+LGH
Sbjct: 540 PLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLGH 591
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
G+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 592 GSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KLG 644
Query: 221 RNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
R + +P LI K Q D ++V CG+ ++ +T DG +++SWG+G + LG
Sbjct: 645 RGGSDGCKTPKLIE-------KLQDLDVIKVRCGSQFSIALTKDG-QVYSWGKGDNQRLG 696
Query: 279 TG 280
G
Sbjct: 697 HG 698
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4050 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4106
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 4107 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VIDI 4155
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4156 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4206
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4207 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4254
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4255 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4302
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 130/296 (43%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSP--VWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G G + S P P + + V KVA
Sbjct: 3004 AGGSKSLFAVTVEGKVYSCGE------ATNGRLGLGMSSGTVPIPRQITALSSYVVKKVA 3057
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3058 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3106
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3107 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3157
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3158 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3208
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3209 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3257
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3106 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3162
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3163 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3213
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3214 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3264
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3265 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3313
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3314 GQKITRVACGSSHSV 3328
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4099 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4152
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4153 IDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4203
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4204 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4254
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4255 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4305
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4306 -QGKKVN---RVACGSAHTL 4321
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3952 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4008
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4009 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4059
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4060 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4110
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H + +ACG+
Sbjct: 4111 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVIDIACGS 4159
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4160 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4187
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + V+KV CGS+
Sbjct: 618 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQF 674
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 675 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 723
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 724 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPTA-LPGLDSKHIVGI 772
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 773 ACGPAQSFAWSSCSE-WSIGLR 793
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 523 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 582
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 583 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 630
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 631 QVWSWGDGDYGKLGRGGSDGCKTPKLI 657
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3962 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3999
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 4000 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4058
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4059 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4105
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4106 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4144
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 472 LSRNGRVYTQAYNSDMLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 530
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 531 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 583
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 584 GNYGRLGHGSSEDEAIPMLV 603
>gi|334346980|ref|XP_001366466.2| PREDICTED: e3 ubiquitin-protein ligase HERC2 [Monodelphis domestica]
Length = 4706
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 133/290 (45%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3052 AVHSGGRHAMALTVDGKVFSWGEG---DDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3108
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE Y+WG G+LG GD ++L+PK+++ V +V
Sbjct: 3109 SSHSAAITSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3157
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3158 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3210
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ +G VW+WG KG LG + + + + + G G
Sbjct: 3211 IECGAQFSLALTKSGVVWTWG--KGDYFRLGHGTDVHVRKPQVVE----------GLRGK 3258
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3259 KI---VHVAVGALHCLAVTDTG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3304
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 116/243 (47%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE + SWG + G+LG GD
Sbjct: 482 TLGPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVF--------SWGCGDGGRLGHGDT 533
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I + + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 534 VPLEEPKMISALSGKQAGKHVVHIACGSTYSAAITA--------EGELYTWGRGNYGRLG 585
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 586 HGSSEDQTIPMLVTGL-KGLKVIDVSCGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 638
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ +V +T DG +++SWG+G + L
Sbjct: 639 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSVALTKDG-QVYSWGKGDNQRL 690
Query: 278 GTG 280
G G
Sbjct: 691 GHG 693
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 112/255 (43%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S AI ++G L+ WG L + G + P V GH V++V
Sbjct: 3101 RIRDIACGSSHSAAITSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3157
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3158 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3208
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHGT P+ V+ L +
Sbjct: 3209 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGTDVHVRKPQVVEGL-RGKK 3259
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ G V++WG + G N + T N P L+ G +
Sbjct: 3260 IVHVAVGALHCLAVTDTGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3308
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3309 GQKITRVACGSSHSV 3323
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 132/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2999 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSNYVVKKVA 3052
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H +AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3053 VHSGGRHAMALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3101
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A +T +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3102 IRDIACGSSHSAAITSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3152
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3153 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3203
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3204 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGTDVHVRKPQVV 3252
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
G+ V+ +ACGS L +D +SWG + G+LG G + P I++
Sbjct: 4012 LQGYRVIDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS 4065
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
+ V +V CGS + LT +T+G G+ +LGHG+ P Q
Sbjct: 4066 L---TGLGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQ 4114
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM--EKGLGLCPNASLTRNEAGDAISPI 231
V+ L Q ++++ G H + G+V++WG E LG ++ R P
Sbjct: 4115 VQGL-QGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PR 4165
Query: 232 LISGNGPHGPKFQDPVQVACGAAHTV 257
L++ G K +VACG+AHT+
Sbjct: 4166 LVAAL--QGKKIN---RVACGSAHTL 4186
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 84/214 (39%), Gaps = 30/214 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
S +G +LA+ G +W WG+ D G TP + VVKV CG
Sbjct: 610 SCGSGDAQTLAVTENGQVWSWGDG---DYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCG 666
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S+ VAL G+ Y SWG +N +LG G E PK++E V +V
Sbjct: 667 SQFSVALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VVDV 715
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYL 183
GS H LT E W G N Q H T PE LP ++
Sbjct: 716 AAGSTHCLALTEDS------EVHSW----GSNDQCQHFDTLRITKPEPTA-LPGLDTKHI 764
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCP 215
V + CG + SS + WS G+ + +CP
Sbjct: 765 VGIACGPAQSFAWSSCSE-WSIGLRVPFVVDVCP 797
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G S+A+ +GA++ WG D G S P V G V+ +A
Sbjct: 4071 VVKVECGSQFSVALTKSGAVYTWGKG---DYHRLGHGSDDHVRRPRQVQGLQGKKVIAIA 4127
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H V GE Y +WG N+ GQLG G + RP+++ +
Sbjct: 4128 TGSLHCVCCTEDGEVY--------TWGDNDEGQLGDGTTNAIQRPRLVAALQGKK---IN 4176
Query: 124 EVTCGSFHT 132
V CGS HT
Sbjct: 4177 RVACGSAHT 4185
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 74/185 (40%), Gaps = 23/185 (12%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +L + + +W WG+ D G P + G VVKV CGS+
Sbjct: 4024 SGDAQTLCLTDDDTVWSWGDG---DYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQF 4080
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL +G Y+WG + +LG G + RP+ ++ V + G
Sbjct: 4081 SVALTKSG--------AVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKK---VIAIATG 4129
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
S H T + +T+G + GQLG GTT + P V L Q + V C
Sbjct: 4130 SLHCVCCTE--------DGEVYTWGDNDEGQLGDGTTNAIQRPRLVAAL-QGKKINRVAC 4180
Query: 189 GLFHT 193
G HT
Sbjct: 4181 GSAHT 4185
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + L ++V + CG +++ +++ G++++WG
Sbjct: 518 FSWGCGDGGRLGHGDTVPLEEPKMISALSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 577
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D V+CG+ A T+ VT++G
Sbjct: 578 RGN------YGRLGHGSSEDQTIPMLVTGL--KGLKVID---VSCGSGDAQTLAVTENG- 625
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 626 QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 93/235 (39%), Gaps = 55/235 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSP------------------------WAV 122
Y WG N+ GQLG + P E P + V
Sbjct: 3958 YGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPIQLIGGEQTLFAVTADGKVEALQGYRV 4017
Query: 123 YEVTCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
++ CGS T LT + W++G G+ G+LG G + VP ++ L
Sbjct: 4018 IDIACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TG 4068
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGN 236
+ +V V+CG + ++ +G V++WG KG LG + + R
Sbjct: 4069 LGVVKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQ 4116
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4117 GLQGKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4167
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
H +++ G+V+SWG G G + E IS + G H V +AC
Sbjct: 507 HYLALAATGEVFSWGCGDG-GRLGHGDTVPLEEPKMISALSGKQAGKH------VVHIAC 559
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ ++ +T +G +L++WGRG G LG G + D P +V
Sbjct: 560 GSTYSAAITAEG-ELYTWGRGNYGRLGHGSSEDQTIPMLV 598
>gi|126032348|ref|NP_004658.3| E3 ubiquitin-protein ligase HERC2 [Homo sapiens]
gi|308153453|sp|O95714.2|HERC2_HUMAN RecName: Full=E3 ubiquitin-protein ligase HERC2; AltName: Full=HECT
domain and RCC1-like domain-containing protein 2
Length = 4834
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3051 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3107
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y+WG G+LG GD ++L+PK+++ V +V
Sbjct: 3108 SSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3156
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3157 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3209
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3210 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3259
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3260 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3303
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 481 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 532
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 533 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 584
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 585 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 637
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 638 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 689
Query: 278 GTG 280
G G
Sbjct: 690 GHG 692
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4043 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4099
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y+WG G+LG D E +L+PK++E V ++
Sbjct: 4100 GAHSACVTAAGD--------LYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 4148
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4149 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4199
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4200 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4247
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4248 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4295
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2998 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 3051
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3052 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3100
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3101 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3151
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3152 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3202
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3203 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3251
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3100 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3156
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3157 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3207
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3208 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3258
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3259 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3307
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3308 GQKITRVACGSSHSV 3322
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4092 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4145
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4146 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4196
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4197 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4247
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4248 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4298
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4299 -QGKKVN---RVACGSAHTL 4314
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3945 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4001
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4002 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4052
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4053 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4103
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 4104 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 4152
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4153 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4180
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 612 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 668
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 669 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 717
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 718 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 766
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 767 ACGPAQSFAWSSCSE-WSIGLR 787
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 517 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 576
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 577 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 624
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 625 QVWSWGDGDYGKLGRGGSDGCKTPKLI 651
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3955 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3992
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3993 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4051
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4052 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4098
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4099 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4137
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 466 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 524
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 525 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 577
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 578 GNYGRLGHGSSEDEAIPMLV 597
>gi|402873774|ref|XP_003919728.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HERC2
[Papio anubis]
Length = 4123
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 2340 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 2396
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 2397 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 2445
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 2446 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 2498
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 2499 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 2548
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 2549 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 2592
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 3332 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 3388
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 3389 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 3437
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 3438 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 3488
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 3489 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 3536
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 3537 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 3584
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2287 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 2340
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 2341 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 2389
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 2390 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 2440
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 2441 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 2491
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 2492 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 2540
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 2389 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 2445
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 2446 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 2496
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 2497 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 2547
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 2548 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 2596
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 2597 GQKITRVACGSSHSV 2611
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 3381 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 3434
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 3435 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 3485
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 3486 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 3536
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 3537 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 3587
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 3588 -QGKKVN---RVACGSAHTL 3603
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3234 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 3290
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 3291 ADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 3341
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 3342 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 3392
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 3393 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 3441
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 3442 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 3469
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3244 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3281
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3282 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 3340
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 3341 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 3387
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 3388 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 3426
>gi|301755556|ref|XP_002913645.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC5-like
[Ailuropoda melanoleuca]
Length = 1035
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 97/204 (47%), Gaps = 23/204 (11%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G SLA+ G L+ WG F+ + TP V G +V+++
Sbjct: 151 IIQIACGDYHSLALSKGGELFAWGQNLHGQLGVGRLFASIP--TPQAVEHLSGVPLVQIS 208
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G H +AL +G YSWG N+ GQLGLG + P +IET + V
Sbjct: 209 AGKAHSMALSMSGNV--------YSWGRNDLGQLGLGHTDGEDFPSLIETLDNQQ---VE 257
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
+ CG HTALLT + + +TFG G+ GQLGH +TQ+ L P V EL +
Sbjct: 258 FLACGGSHTALLT--------TDGLVFTFGAGKYGQLGHNSTQNELRPRLVTELAGN-RV 308
Query: 184 VSVDCGLFHT-SVVSSAGDVWSWG 206
+ CG HT + VS G V+S+G
Sbjct: 309 TQIACGRRHTLAYVSDLGKVFSFG 332
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 118/249 (47%), Gaps = 41/249 (16%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL-RPKIIETFNQ 116
+++++ACG H +AL GE ++WG N +GQLG+G + + P+ +E
Sbjct: 150 SIIQIACGDYHSLALSKGGE--------LFAWGQNLHGQLGVGRLFASIPTPQAVEHL-- 199
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S + +++ G H+ L+ + +++G + GQLG G T P ++
Sbjct: 200 -SGVPLVQISAGKAHSMALS--------MSGNVYSWGRNDLGQLGLGHTDGEDFPSLIET 250
Query: 177 LP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS- 234
L Q V ++ CG HT+++++ G V+++G K L N + + P L++
Sbjct: 251 LDNQQVEFLA--CGGSHTALLTTDGLVFTFGAGK------YGQLGHNSTQNELRPRLVTE 302
Query: 235 --GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
GN Q+ACG HT+ D K++S+G G+ G LG G T + P + +
Sbjct: 303 LAGN--------RVTQIACGRRHTLAYVSDLGKVFSFGSGKEGQLGNGGTHNQLIP-LPM 353
Query: 293 WPPLTEEFK 301
P EE K
Sbjct: 354 KLPSNEELK 362
>gi|60360320|dbj|BAD90404.1| mKIAA0393 protein [Mus musculus]
Length = 1871
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 87 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 143
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y+WG G+LG GD ++L+PK+++ V +V
Sbjct: 144 SSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 192
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 193 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 245
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 246 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 295
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 296 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 339
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 129/292 (44%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG G + P + G VV VA G
Sbjct: 1080 AVNSGGKHCLALSSEGEVYSWGEA---KDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 1136
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y+WG G+LG D E +L+PK++E V ++
Sbjct: 1137 GAHSACVTAAGD--------LYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VIDI 1185
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 1186 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGV 1236
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R P + G
Sbjct: 1237 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRR--------PRQV--QGLQ 1284
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 1285 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 1332
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 136 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 192
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 193 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 243
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 244 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 294
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 295 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 343
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 344 GQKITRVACGSSHSV 358
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 130/296 (43%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSP--VWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G G + S P P + + V KVA
Sbjct: 34 AGGSKSLFAVTVEGKVYSCGE------ATNGRLGLGMSSGTVPIPRQITALSSYVVKKVA 87
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 88 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 136
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 137 IRDIACGSSHSAALTS--------SGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 187
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWG----MEKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 188 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 238
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 239 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 287
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 1129 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 1182
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 1183 IDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 1233
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 1234 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 1284
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 1285 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVA--A 1334
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 1335 LQGKKVN---RVACGSAHTL 1351
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+C ++ G SLA+ +G +W WG D G S V P V G +V VA
Sbjct: 243 VCQIECGAQFSLALTKSGVVWTWGK---GDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVA 299
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ +G+ Y+WG N++GQ G G +P +++ +
Sbjct: 300 VGALHCLAVTDSGQV--------YAWGDNDHGQQGNGTTTVNRKPTLVQGLEGQK---IT 348
Query: 124 EVTCGSFHTALLT 136
V CGS H+ T
Sbjct: 349 RVACGSSHSVAWT 361
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 982 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 1038
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 1039 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 1089
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G ++G+LGHG P ++ L + + +V V G H+
Sbjct: 1090 ALSS--------EGEVYSWGEAKDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 1140
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H + +ACG+
Sbjct: 1141 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVIDIACGS 1189
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 1190 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 1217
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 91/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 992 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 1029
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 1030 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 1088
Query: 194 SVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG K LG + R +++ I + V VA
Sbjct: 1089 LALSSEGEVYSWGEAKDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 1135
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 1136 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 1174
>gi|229442359|gb|AAI72911.1| hect domain and RLD 2 [synthetic construct]
Length = 2427
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 644 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 700
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 701 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 749
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 750 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 802
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 803 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 852
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 853 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 896
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 130/292 (44%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 1636 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 1692
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 1693 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 1741
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 1742 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGV 1792
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R P + G
Sbjct: 1793 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRR--------PRQV--QGLQ 1840
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 1841 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 1888
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 130/296 (43%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSP--VWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G G + S P P + + V KVA
Sbjct: 591 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 644
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 645 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 693
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 694 IRDIACGSSHSAALTS--------SGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 744
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWG----MEKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 745 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 795
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 796 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 844
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 693 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 749
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 750 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 800
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 801 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 851
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 852 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 900
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 901 GQKITRVACGSSHSV 915
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 1685 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 1738
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 1739 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 1789
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 1790 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 1840
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 1841 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVA--A 1890
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 1891 LQGKKVN---RVACGSAHTL 1907
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 1538 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 1594
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 1595 ADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 1645
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 1646 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 1696
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 1697 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 1745
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 1746 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 1773
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+C ++ G SLA+ +G +W WG D G S V P V G +V VA
Sbjct: 800 VCQIECGAQFSLALTKSGVVWTWGK---GDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVA 856
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ +G+ Y+WG N++GQ G G +P +++ +
Sbjct: 857 VGALHCLAVTDSGQV--------YAWGDNDHGQQGNGTTTVNRKPTLVQGLEGQK---IT 905
Query: 124 EVTCGSFHTALLT 136
V CGS H+ T
Sbjct: 906 RVACGSSHSVAWT 918
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 1548 YGWGHNHRGQLGG-----------IEGAKVKVP-----TPCEALATL------RPVQLIG 1585
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 1586 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 1644
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 1645 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 1691
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 1692 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 1730
>gi|194206384|ref|XP_001917973.1| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase HERC2
[Equus caballus]
Length = 4840
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3055 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3111
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3112 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3160
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3161 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3213
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3214 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3263
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3264 -VHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3307
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 482 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 533
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 534 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 585
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ VP V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 586 HGSSEDEAVPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 638
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 639 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 690
Query: 278 GTG 280
G G
Sbjct: 691 GHG 693
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G +V VA G
Sbjct: 4049 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIELVDVAAG 4105
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V +V
Sbjct: 4106 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDV 4154
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4155 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4205
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4206 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4253
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4254 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4301
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P V + V KVA
Sbjct: 3002 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQVTALSSYVVKKVA 3055
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3056 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3104
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3105 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3155
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3156 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3206
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3207 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3255
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3104 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3160
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3161 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3211
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3212 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3262
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ AG V++WG + G N + T N P L+ G +
Sbjct: 3263 IVHVAVGALHCLAVTDAGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3311
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3312 GQKITRVACGSSHSV 3326
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 109/260 (41%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4098 ELVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4151
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V VACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4152 VDVACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4202
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4203 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4253
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R A+
Sbjct: 4254 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVPAL--------- 4304
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4305 -QGKKVN---RVACGSAHTL 4320
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3951 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4007
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4008 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4058
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + LV V G H+
Sbjct: 4059 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIELVDVAAGGAHS 4109
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V VACG+
Sbjct: 4110 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDVACGS 4158
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4159 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4186
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 613 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 669
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 670 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 718
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 719 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEP-SALPGLDTKHIVGI 767
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 768 ACGPAQSFAWSSCSE-WSIGLR 788
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 518 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 577
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G K + VACG+ A T+ VT++G
Sbjct: 578 RGN------YGRLGHGSSEDEAVPMLVAGL-----KGLKVIDVACGSGDAQTLAVTENG- 625
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 626 QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3961 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3998
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3999 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4057
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4058 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEL-------------VDVAA 4104
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4105 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4143
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 467 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 525
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 526 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 578
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 579 GNYGRLGHGSSEDEAVPMLV 598
>gi|157821067|ref|NP_001100990.1| E3 ubiquitin-protein ligase HERC2 [Rattus norvegicus]
gi|149031474|gb|EDL86454.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
RCC1 (CHC1)-like domain (RLD) 2 (predicted) [Rattus
norvegicus]
Length = 4779
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 2995 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3051
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3052 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3100
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3101 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3153
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3154 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3203
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3204 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3247
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 116/242 (47%), Gaps = 38/242 (15%)
Query: 46 FTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 428 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDTV 479
Query: 104 SRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
PK+I F+ + + V + CGS ++A +T E +T+G G G+LGH
Sbjct: 480 PLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLGH 531
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
G+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 532 GSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KLG 584
Query: 221 RNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
R + +P LI K Q D ++V CG+ ++ +T DG +++SWG+G + LG
Sbjct: 585 RGGSDGCKTPKLIE-------KLQDLDVIKVRCGSQFSIALTKDG-QVYSWGKGDNQRLG 636
Query: 279 TG 280
G
Sbjct: 637 HG 638
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 3988 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4044
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 4045 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VIDI 4093
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4094 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4144
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4145 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4192
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4193 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4240
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 130/296 (43%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSP--VWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G G + S P P + + V KVA
Sbjct: 2942 AGGSKSLFAVTVEGKVYSCGE------ATNGRLGLGMSSGTVPIPRQITALSSYVVKKVA 2995
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 2996 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3044
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3045 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3095
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3096 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3146
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3147 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3195
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3044 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3100
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3101 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3151
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3152 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3202
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3203 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3251
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3252 GQKITRVACGSSHSV 3266
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4037 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4090
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4091 IDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4141
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4142 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4192
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4193 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4243
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4244 -QGKKVN---RVACGSAHTL 4259
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3890 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 3946
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 3947 ADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 3997
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 3998 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4048
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H + +ACG+
Sbjct: 4049 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVIDIACGS 4097
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4098 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4125
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 83/211 (39%), Gaps = 30/211 (14%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + V+KV CGS+
Sbjct: 558 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQF 614
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 615 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 663
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 664 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPTA-LPGLDTKHIVGI 712
Query: 187 DCGLFHTSVVSSAGDVWSWGMEKG--LGLCP 215
CG + SS + WS G+ + +CP
Sbjct: 713 ACGPAQSFAWSSCSE-WSIGLRVPFVVDICP 742
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 463 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 522
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 523 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 570
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 571 QVWSWGDGDYGKLGRGGSDGCKTPKLI 597
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3900 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3937
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3938 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 3996
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 3997 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4043
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4044 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4082
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 412 LSRNGRVYTQAYNSDMLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 470
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 471 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 523
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 524 GNYGRLGHGSSEDEAIPMLV 543
>gi|281354478|gb|EFB30062.1| hypothetical protein PANDA_019422 [Ailuropoda melanoleuca]
Length = 4814
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3029 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3085
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3086 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3134
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3135 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3187
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3188 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3237
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3238 -VHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3281
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V ++K+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 459 TLAPQLVQGLASRNIIKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 510
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 511 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 562
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 563 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 615
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 616 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 667
Query: 278 GTG 280
G G
Sbjct: 668 GHG 670
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4023 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4079
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V +V
Sbjct: 4080 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDV 4128
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4129 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4179
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4180 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4227
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4228 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4275
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3078 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3134
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3135 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3185
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3186 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3236
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ AG V++WG + G N + T N P L+ G +
Sbjct: 3237 IVHVAVGALHCLAVTDAGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3285
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3286 GQKITRVACGSSHSV 3300
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2976 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 3029
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3030 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3078
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3079 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3129
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3130 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3180
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3181 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3229
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4072 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4125
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V VACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4126 VDVACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4176
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4177 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4227
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4228 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4278
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4279 -QGKKVN---RVACGSAHTL 4294
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3925 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 3981
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 3982 ADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4032
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4033 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4083
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V VACG+
Sbjct: 4084 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDVACGS 4132
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4133 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4160
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 590 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 646
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 647 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 695
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 696 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 744
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 745 ACGPAQSFAWSSCSE-WSIGLR 765
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 495 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 554
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 555 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 602
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 603 QVWSWGDGDYGKLGRGGSDGCKTPKLI 629
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3935 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3972
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3973 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4031
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4032 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4078
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4079 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4117
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 444 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIIKIAAHSDGHHYLALAATGEVYSWGCGDG- 502
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 503 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 555
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 556 GNYGRLGHGSSEDEAIPMLV 575
>gi|432118039|gb|ELK37976.1| E3 ubiquitin-protein ligase HERC2 [Myotis davidii]
Length = 4285
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 2755 AVHSGGRHATALTVDGKVFSWGEG---DDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 2811
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 2812 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 2860
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ VP+ ++ L +
Sbjct: 2861 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNVPQNIERL-NGQGVCQ 2913
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 2914 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 2963
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 2964 -VHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3007
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 114/243 (46%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 482 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 533
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 534 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 585
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTS--VVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG V+ G VWSWG L
Sbjct: 586 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQPLAVTDNGQVWSWGDGD------YGKL 638
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ +V +T DG +++SWG+G + L
Sbjct: 639 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSVALTKDG-QVYSWGKGDNQRL 690
Query: 278 GTG 280
G G
Sbjct: 691 GHG 693
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 2804 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 2860
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 2861 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNVPQNIERLNGQ---GV 2911
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 2912 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 2962
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ AG V++WG + G N + T N P L+ G +
Sbjct: 2963 IVHVAVGALHCLAVTDAGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3011
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3012 GQKITRVACGSSHSV 3026
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 130/296 (43%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSP--VWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G G + S P P V + V KVA
Sbjct: 2702 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGMSSGTVPIPRQVTALSSYVVKKVA 2755
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 2756 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 2804
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 2805 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 2855
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWG----MEKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 2856 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNVPQN---------IERL 2906
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 2907 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 2955
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 119/289 (41%), Gaps = 47/289 (16%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P V G VV +A G
Sbjct: 3722 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVVESLRGTEVVDIAAG 3778
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ Y +WG G+LG D E +L+PK++E V +V
Sbjct: 3779 GAHSACVTSAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDV 3827
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP +V
Sbjct: 3828 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKVP-------- 3871
Query: 184 VSVDCGLFHTSVVS-SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+S+ G T S DV G LG + + R P + G G K
Sbjct: 3872 LSLRVGRPSTPPPSWPRLDVGGKGDYHRLGHGSDDHVRR--------PRQV--QGLQGKK 3921
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +A G+ H V T++G ++++WG G LG G T P +V
Sbjct: 3922 V---IAIATGSLHCVCCTEEG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 3966
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 118/269 (43%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3624 TLSAGGSGTIYGWGHN---HRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 3680
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y + G G+LG+G ES P ++E+ V V G H
Sbjct: 3681 ADGKLY--------ATGYGAGGRLGVGGTESVSAPTLLESIQHVFIRKV-AVNSGGKHCL 3731
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P V+ L + +V + G H+
Sbjct: 3732 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVVESL-RGTEVVDIAAGGAHS 3782
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V+SAGD+++WG + L +++ D + P L+ H V VACG+
Sbjct: 3783 ACVTSAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDVACGS 3831
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 3832 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 3859
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G LA+ + G +W WG+ D G TP + VVKV CGS+
Sbjct: 613 SGDAQPLAVTDNGQVWSWGDG---DYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 669
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 670 SVALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEALQGKK---VIDVAAG 718
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 719 STHCLALTEDS------EVHSW----GNNDQCQHFDTLHQTKPEP-SLLPGLDTKHIVGI 767
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 768 ACGPAQSFAWSSCSE-WSVGLR 788
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 518 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 577
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G K + VACG+ A + VTD+G
Sbjct: 578 RGN------YGRLGHGSSEDEAIPMLVAGL-----KGLKVIDVACGSGDAQPLAVTDNG- 625
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 626 QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 103/265 (38%), Gaps = 58/265 (21%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
+++ + AGG S + +AG L+ WG L S +E P V GH
Sbjct: 3770 TEVVDIAAGGAHSACVTSAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHR 3823
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV VACGS L +D +SWG + G+LG G + P
Sbjct: 3824 VVDVACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVP---------- 3867
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCW----TFGLGENGQLGHGTTQSALVPEQV 174
L RP+ S W G G+ +LGHG+ P QV
Sbjct: 3868 -----------MKVPLSLRVGRPSTPPPS--WPRLDVGGKGDYHRLGHGSDDHVRRPRQV 3914
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPIL 232
+ L Q ++++ G H + G+V++WG E LG ++ R P L
Sbjct: 3915 QGL-QGKKVIAIATGSLHCVCCTEEGEVYTWGDNDEGQLGDGTTNAIQR--------PRL 3965
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTV 257
++ G K +VACG+AHT+
Sbjct: 3966 VAAL--QGRKVN---RVACGSAHTL 3985
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3634 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3671
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3672 GEQTLFAVTADGKLYATGYGAGGRLGVGGTESVSAPTLLESI-QHVFIRKVAVNSGGKHC 3730
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ + + V +A
Sbjct: 3731 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVVESL-------------RGTEVVDIAA 3777
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 3778 GGAHSACVTSAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 3816
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 12/141 (8%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 467 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGG 526
Query: 212 GLCPNASLTRNEAGDAISPILISG-NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG 270
L ++ E P +IS +G K V +ACG+ ++ +T +G +L++WG
Sbjct: 527 RLGHGDTVPLEE------PKVISAFSGKQAGKHV--VHIACGSTYSAAITAEG-ELYTWG 577
Query: 271 RGRSGVLGTGKTIDFFAPAIV 291
RG G LG G + D P +V
Sbjct: 578 RGNYGRLGHGSSEDEAIPMLV 598
>gi|355694501|gb|AER99690.1| hect domain and RLD 5 [Mustela putorius furo]
Length = 675
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 100/206 (48%), Gaps = 27/206 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSP--VWDFHGHTVVK 61
I + G SLA+ G L+ WG + + G + + P+P V G +V+
Sbjct: 49 IIQITCGDYHSLALSKGGELFAWGQ----NLHGQLGIGRLFASIPTPQLVEHLSGVPLVQ 104
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
++ G H +AL +G YSWG N+ GQLGLG + P ++E +
Sbjct: 105 ISAGKAHSMALSMSGN--------IYSWGRNDLGQLGLGHTDGEEFPSLVEALDSQK--- 153
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V + CG HTALLT + +TFG G++GQLGH +TQ+ L P V EL +
Sbjct: 154 VEFLACGGSHTALLTE--------DGQVFTFGAGKHGQLGHNSTQNELRPRLVTELTG-I 204
Query: 182 YLVSVDCGLFHT-SVVSSAGDVWSWG 206
+ V CG HT + VS G V+S+G
Sbjct: 205 RVTQVACGRRHTLAYVSDLGKVFSFG 230
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 34/239 (14%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL-RPKIIETFNQ 116
+++++ CG H +AL GE ++WG N +GQLG+G + + P+++E
Sbjct: 48 SIIQITCGDYHSLALSKGGE--------LFAWGQNLHGQLGIGRLFASIPTPQLVEHL-- 97
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S + +++ G H+ L+ + +++G + GQLG G T P V+
Sbjct: 98 -SGVPLVQISAGKAHSMALS--------MSGNIYSWGRNDLGQLGLGHTDGEEFPSLVEA 148
Query: 177 L-PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q V ++ CG HT++++ G V+++G K + L N + + P L++
Sbjct: 149 LDSQKVEFLA--CGGSHTALLTEDGQVFTFGAGK------HGQLGHNSTQNELRPRLVTE 200
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
G + QVACG HT+ D K++S+G G+ G LG G T + P + P
Sbjct: 201 LT--GIRV---TQVACGRRHTLAYVSDLGKVFSFGSGKEGQLGNGGTHNQLIPLPMKLP 254
>gi|328870950|gb|EGG19322.1| regulator of chromosome condensation domain-containing protein
[Dictyostelium fasciculatum]
Length = 2003
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 146/322 (45%), Gaps = 57/322 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW----DFHG-- 56
+I S+ G +L + + G L+ +G+ + + G + + P P D H
Sbjct: 1301 KISSIATGYWHTLVLRSGGDLFAFGS----NEHGQLGLNDLKHHLPIPTRVNTADIHHAG 1356
Query: 57 --HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
V + CG H V S G+ YS+GAN GQLG G ES PK+I+
Sbjct: 1357 QPTRVTGIFCGHSHSVLRTSHGD--------VYSFGANAKGQLGHGSTESCRYPKLIQGL 1408
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
+ + +TCG +HT + T D+ CW G GE+ LG G+ ++ LVP+ V
Sbjct: 1409 KGKN---IKRITCGPYHTVVTT------DLDSVYCW--GQGEHMCLGTGSNKNELVPKLV 1457
Query: 175 KELPQYVYLVSVDCGLFHTSVVS-------SAGDVWSWGMEK----GLGLCPNASLTRNE 223
EL + V CGL+HT+ ++ + G+V+ G + G+G P S + ++
Sbjct: 1458 -ELFVNKRVERVVCGLYHTATLTQPMGDSNTGGNVYICGSSEHGKLGIGGDPR-SPSLDK 1515
Query: 224 AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
A AI P + S N V +A GA L+T +G L+ WG G G +G GK
Sbjct: 1516 AYPAIIPSINSAN---------VVDLASGAEFNALITSNG-ALYMWGAGTHGQIGNGKNQ 1565
Query: 284 DFFAPAIVLWPPLTEEFKQDEL 305
D + P V L+ E Q++
Sbjct: 1566 DTWIPTRV---SLSSEKNQNQF 1584
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 128/303 (42%), Gaps = 46/303 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + GG ++ ID + ++ WGN G S + P + +F G + +A
Sbjct: 1250 IMMMSLGGEHTVVIDRSFHIYSWGNGKY--GQLGHGVSTPHNL-PKRIEEFAGQKISSIA 1306
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL----RPKIIETFNQDSP 119
G H + L S G+ +++G+N +GQLGL D + L R + + P
Sbjct: 1307 TGYWHTLVLRSGGD--------LFAFGSNEHGQLGLNDLKHHLPIPTRVNTADIHHAGQP 1358
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V + CG H+ L T ++FG GQLGHG+T+S P+ ++ L +
Sbjct: 1359 TRVTGIFCGHSHSVLRTSHGD--------VYSFGANAKGQLGHGSTESCRYPKLIQGL-K 1409
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ + CG +HT V + V+ WG +G +C +NE + + ++
Sbjct: 1410 GKNIKRITCGPYHTVVTTDLDSVYCWG--QGEHMCLGTGSNKNELVPKLVELFVN----- 1462
Query: 240 GPKFQDPVQVACGAAHTVLVT------DDGYKLWSWGRGRSGVLGTG-----KTIDFFAP 288
+ +V CG HT +T + G ++ G G LG G ++D P
Sbjct: 1463 ----KRVERVVCGLYHTATLTQPMGDSNTGGNVYICGSSEHGKLGIGGDPRSPSLDKAYP 1518
Query: 289 AIV 291
AI+
Sbjct: 1519 AII 1521
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 120/295 (40%), Gaps = 44/295 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS---SFTPSPVWDFHGHTVVKV 62
SV G + I G L+ WGN ++S + G L + TP V ++ +
Sbjct: 1198 SVSCGWEHAAVITVDGELFTWGN----NTSGQLGHGLAAGKHQSTPMRVESLKQTPIMMM 1253
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G EH V + YSWG GQLG G PK IE F + +
Sbjct: 1254 SLGGEHTVVI--------DRSFHIYSWGNGKYGQLGHGVSTPHNLPKRIEEF---AGQKI 1302
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL-VPEQVKELP--- 178
+ G +HT +L + D+ + FG E+GQLG + L +P +V
Sbjct: 1303 SSIATGYWHTLVL---RSGGDL-----FAFGSNEHGQLGLNDLKHHLPIPTRVNTADIHH 1354
Query: 179 --QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q + + CG H+ + +S GDV+S+G L P LI
Sbjct: 1355 AGQPTRVTGIFCGHSHSVLRTSHGDVYSFGANA------KGQLGHGSTESCRYPKLI--- 1405
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K ++ ++ CG HTV+ TD ++ WG+G LGTG + P +V
Sbjct: 1406 --QGLKGKNIKRITCGPYHTVVTTDLD-SVYCWGQGEHMCLGTGSNKNELVPKLV 1457
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 110/249 (44%), Gaps = 33/249 (13%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQL--GLGDRESR 105
P P F+ V+CG EH + GE ++WG N +GQL GL + +
Sbjct: 1185 PMPALRFNEKHAKSVSCGWEHAAVITVDGE--------LFTWGNNTSGQLGHGLAAGKHQ 1236
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
P +E+ Q + ++ G HT ++ +++G G+ GQLGHG +
Sbjct: 1237 STPMRVESLKQT---PIMMMSLGGEHTVVIDRSFH--------IYSWGNGKYGQLGHGVS 1285
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
+P++++E + S+ G +HT V+ S GD++++G + + L N+
Sbjct: 1286 TPHNLPKRIEEFAGQK-ISSIATGYWHTLVLRSGGDLFAFGSNE------HGQLGLNDLK 1338
Query: 226 DAISPILISGNGPHGPKFQDPVQVA---CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+ PI N P +V CG +H+VL T G ++S+G G LG G T
Sbjct: 1339 HHL-PIPTRVNTADIHHAGQPTRVTGIFCGHSHSVLRTSHG-DVYSFGANAKGQLGHGST 1396
Query: 283 IDFFAPAIV 291
P ++
Sbjct: 1397 ESCRYPKLI 1405
>gi|301787735|ref|XP_002929284.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like
[Ailuropoda melanoleuca]
Length = 4837
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3052 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3108
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3109 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3157
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3158 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3210
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3211 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3260
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3261 -VHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3304
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V ++K+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 482 TLAPQLVQGLASRNIIKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 533
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 534 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 585
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 586 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 638
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 639 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 690
Query: 278 GTG 280
G G
Sbjct: 691 GHG 693
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4046 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4102
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V +V
Sbjct: 4103 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDV 4151
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4152 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4202
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4203 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4250
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4251 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4298
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2999 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 3052
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3053 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3101
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3102 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3152
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3153 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3203
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3204 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3252
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3101 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3157
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3158 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3208
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3209 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3259
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ AG V++WG + G N + T N P L+ G +
Sbjct: 3260 IVHVAVGALHCLAVTDAGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3308
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3309 GQKITRVACGSSHSV 3323
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4095 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4148
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V VACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4149 VDVACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4199
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4200 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4250
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4251 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4301
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4302 -QGKKVN---RVACGSAHTL 4317
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3948 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4004
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4005 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4055
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4056 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4106
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V VACG+
Sbjct: 4107 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDVACGS 4155
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4156 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4183
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 613 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 669
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 670 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 718
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 719 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 767
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 768 ACGPAQSFAWSSCSE-WSIGLR 788
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 518 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 577
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 578 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 625
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 626 QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3958 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3995
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3996 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4054
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4055 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4101
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4102 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4140
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 467 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIIKIAAHSDGHHYLALAATGEVYSWGCGDG- 525
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 526 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 578
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 579 GNYGRLGHGSSEDEAIPMLV 598
>gi|156740286|ref|YP_001430415.1| regulator of chromosome condensation RCC1 [Roseiflexus castenholzii
DSM 13941]
gi|156231614|gb|ABU56397.1| regulator of chromosome condensation RCC1 [Roseiflexus castenholzii
DSM 13941]
Length = 792
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 126/294 (42%), Gaps = 47/294 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWG---NCPLPD-SSTEGGFSLVSSFTPSPVWDFHGH 57
S + ++ AGG + A+ ++G +W WG + L D ++T+ G + S PS V
Sbjct: 475 SGVTAIAAGGSHTCALMSSGGVWCWGRNSSGQLGDGTTTDRGTPVAVSGLPSEV------ 528
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+A G H AL S+G ++C WGAN +GQLG G +R P +
Sbjct: 529 --TAIASGGVHTCALTSSG------GVMC--WGANWSGQLGDGTTTARSTPVAVSGL--- 575
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P V + G HT LT W +G +GQLG GTT + P V L
Sbjct: 576 -PSGVMAIAAGDLHTCALTS--------SGGVWCWGANSSGQLGDGTTTARSTPVAVSGL 626
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P V ++ G FHT ++S+G VW WG + L D+ +P+ +SG
Sbjct: 627 PSGVTAIAA--GSFHTCALTSSGGVWCWGANW------SGQLGDGSYTDSSTPVAVSGL- 677
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P G +A G HT T G +W W R G LG G D P V
Sbjct: 678 PSGVT-----AIAAGRFHTCARTGSG-GVWCWASNRYGQLGDGSYTDSSTPVAV 725
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 123/284 (43%), Gaps = 47/284 (16%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVS-SFTPSPVWDFHGH 57
S++ ++ +GG+ + A+ ++G + WG + L D +T + V+ S PS V
Sbjct: 526 SEVTAIASGGVHTCALTSSGGVMCWGANWSGQLGDGTTTARSTPVAVSGLPSGV------ 579
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+ +A G H AL S+G + WGAN++GQLG G +R P +
Sbjct: 580 --MAIAAGDLHTCALTSSGGVW--------CWGANSSGQLGDGTTTARSTPVAVSGL--- 626
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P V + GSFHT LT W +G +GQLG G+ + P V L
Sbjct: 627 -PSGVTAIAAGSFHTCALTS--------SGGVWCWGANWSGQLGDGSYTDSSTPVAVSGL 677
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P V ++ G FHT + +G VW W + G + S T D+ +P+ +SG
Sbjct: 678 PSGVTAIAA--GRFHTCARTGSGGVWCWASNR-YGQLGDGSYT-----DSSTPVAVSG-- 727
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+A G HT T G + WG SG LG G+
Sbjct: 728 ----LVSGVTAIAAGVVHTCARTSSGGVM-CWGANSSGQLGDGR 766
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 116/293 (39%), Gaps = 45/293 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
S + ++ AGG + A+ ++G +W WG+ L D +T TP V
Sbjct: 220 SGVTAIAAGGSHTCALMSSGGVWCWGDNWSGQLGDGTTT------DRSTPVAVSGLA-SG 272
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +A G H A S+G ++C WGAN +GQLG G +R P +
Sbjct: 273 VTAIAAGGFHTCARTSSG------GVMC--WGANWSGQLGDGTTTARSTPVAVSGLAS-- 322
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + G HT LT W +G GQLG GTT P V L
Sbjct: 323 --GVTAIAAGDSHTCALTS--------SGGVWCWGYNFFGQLGDGTTTDRSTPVAVSGLG 372
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
V ++ G FHT + S+G V WG K L + TR+ +P+ +SG
Sbjct: 373 SGVTAIAA--GDFHTCALMSSGGVRCWGRNKDGQLGDGTTTTRS------TPVAVSG--- 421
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A G HT T G + WG SG LG G T D P V
Sbjct: 422 ---LVSGVTAIAAGDDHTCARTSSGGVM-CWGDNWSGQLGDGTTTDRSTPVAV 470
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 115/295 (38%), Gaps = 49/295 (16%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
S + ++ AG + A+ ++G +W WG L D +T TP V G
Sbjct: 322 SGVTAIAAGDSHTCALTSSGGVWCWGYNFFGQLGDGTTT------DRSTPVAVSGL-GSG 374
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +A G H AL+S+G + C WG N +GQLG G +R P +
Sbjct: 375 VTAIAAGDFHTCALMSSG------GVRC--WGRNKDGQLGDGTTTTRSTPVAVSGLVS-- 424
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKE 176
V + G HT T MCW G+N GQLG GTT P V
Sbjct: 425 --GVTAIAAGDDHTCARTSSGGV------MCW----GDNWSGQLGDGTTTDRSTPVAVSG 472
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L V ++ G HT + S+G VW WG + L D +P+ +SG
Sbjct: 473 LGSGVTAIAA--GGSHTCALMSSGGVWCWGRNS------SGQLGDGTTTDRGTPVAVSG- 523
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +A G HT +T G + WG SG LG G T P V
Sbjct: 524 -----LPSEVTAIASGGVHTCALTSSGGVM-CWGANWSGQLGDGTTTARSTPVAV 572
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 96/251 (38%), Gaps = 46/251 (18%)
Query: 43 VSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
SSF+P G V +A G H AL S+G ++C WG N GQLG G
Sbjct: 60 TSSFSP-----LQG--VTAIAAGGAHTCALTSSG------GVMC--WGRNGFGQLGDGTT 104
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQL 160
R P + V + G HT L MCW G+N GQL
Sbjct: 105 TDRSTPVAVSGLTS----GVTAIAAGYAHTCALMSSGGV------MCW----GDNWSGQL 150
Query: 161 GHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
G GTT P V L V ++ G HT +S+G V WG + L
Sbjct: 151 GDGTTTDRSTPVAVSGLASGVTAIAA--GDDHTCARTSSGGVMCWGDNW------SGQLG 202
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
D +P+ +SG G +A G +HT + G +W WG SG LG G
Sbjct: 203 DGTTTDRSTPVAVSGLG------SGVTAIAAGGSHTCALMSSG-GVWCWGDNWSGQLGDG 255
Query: 281 KTIDFFAPAIV 291
T D P V
Sbjct: 256 TTTDRSTPVAV 266
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 112/296 (37%), Gaps = 49/296 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ + ++ AGG + A+ ++G + WG L D +T TP V
Sbjct: 66 LQGVTAIAAGGAHTCALTSSGGVMCWGRNGFGQLGDGTTT------DRSTPVAVSGLT-S 118
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V +A G H AL+S+G ++C WG N +GQLG G R P +
Sbjct: 119 GVTAIAAGYAHTCALMSSG------GVMC--WGDNWSGQLGDGTTTDRSTPVAVSGLAS- 169
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVK 175
V + G HT T MCW G+N GQLG GTT P V
Sbjct: 170 ---GVTAIAAGDDHTCARTSSGGV------MCW----GDNWSGQLGDGTTTDRSTPVAVS 216
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L V ++ G HT + S+G VW WG + L D +P+ +SG
Sbjct: 217 GLGSGVTAIAA--GGSHTCALMSSGGVWCWGDNW------SGQLGDGTTTDRSTPVAVSG 268
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A G HT T G + WG SG LG G T P V
Sbjct: 269 ------LASGVTAIAAGGFHTCARTSSGGVM-CWGANWSGQLGDGTTTARSTPVAV 317
>gi|410960762|ref|XP_003986956.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform 1 [Felis
catus]
Length = 4837
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3052 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3108
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3109 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3157
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3158 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3210
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3211 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3260
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3261 -VHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3304
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 482 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 533
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 534 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 585
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 586 HGSSEDEAIPVLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 638
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 639 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 690
Query: 278 GTG 280
G G
Sbjct: 691 GHG 693
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4046 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4102
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V +V
Sbjct: 4103 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHH---VVDV 4151
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4152 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4202
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4203 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4250
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4251 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4298
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3101 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3157
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3158 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3208
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3209 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3259
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ AG V++WG + G N + T N P L+ G +
Sbjct: 3260 IVHVAVGALHCLAVTDAGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3308
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3309 GQKITRVACGSSHSV 3323
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2999 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 3052
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3053 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3101
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3102 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3152
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3153 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3203
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3204 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3252
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4095 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHHV 4148
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V VACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4149 VDVACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4199
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4200 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4250
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4251 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4301
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4302 -QGKKVN---RVACGSAHTL 4317
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3948 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4004
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4005 ADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4055
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4056 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4106
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V VACG+
Sbjct: 4107 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----HVVDVACGS 4155
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4156 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4183
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 613 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 669
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 670 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 718
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 719 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 767
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 768 ACGPAQSFAWSSCSE-WSIGLR 788
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 518 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 577
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 578 RGN------YGRLGHGSSEDEAIPVLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 625
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 626 QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3958 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3995
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3996 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4054
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4055 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4101
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4102 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4140
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 467 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 525
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 526 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 578
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 579 GNYGRLGHGSSEDEAIPVLV 598
>gi|410960764|ref|XP_003986957.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform 2 [Felis
catus]
Length = 4844
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3059 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3115
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3116 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3164
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3165 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3217
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3218 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3267
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3268 -VHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3311
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 482 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 533
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 534 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 585
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 586 HGSSEDEAIPVLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 638
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 639 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 690
Query: 278 GTG 280
G G
Sbjct: 691 GHG 693
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4053 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4109
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V +V
Sbjct: 4110 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHH---VVDV 4158
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4159 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4209
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4210 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4257
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4258 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4305
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3108 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3164
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3165 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3215
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3216 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3266
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ AG V++WG + G N + T N P L+ G +
Sbjct: 3267 IVHVAVGALHCLAVTDAGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3315
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3316 GQKITRVACGSSHSV 3330
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 3006 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 3059
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3060 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3108
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3109 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3159
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3160 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3210
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3211 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3259
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4102 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHHV 4155
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V VACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4156 VDVACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4206
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4207 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4257
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4258 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4308
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4309 -QGKKVN---RVACGSAHTL 4324
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3955 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4011
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4012 ADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4062
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4063 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4113
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V VACG+
Sbjct: 4114 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----HVVDVACGS 4162
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4163 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4190
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 613 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 669
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 670 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 718
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 719 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 767
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 768 ACGPAQSFAWSSCSE-WSIGLR 788
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 518 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 577
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 578 RGN------YGRLGHGSSEDEAIPVLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 625
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 626 QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3965 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 4002
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 4003 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4061
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4062 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4108
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4109 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4147
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 467 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 525
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 526 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 578
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 579 GNYGRLGHGSSEDEAIPVLV 598
>gi|440911989|gb|ELR61602.1| E3 ubiquitin-protein ligase HERC2 [Bos grunniens mutus]
Length = 4835
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3050 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3106
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3107 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3155
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3156 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3208
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3209 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3258
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3259 -VHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3302
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 482 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 533
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 534 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 585
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 586 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 638
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ +V +T DG +++SWG+G + L
Sbjct: 639 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSVALTKDG-QVYSWGKGDNQRL 690
Query: 278 GTG 280
G G
Sbjct: 691 GHG 693
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4044 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGTEVVDVAAG 4100
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V +V
Sbjct: 4101 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDV 4149
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4150 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4200
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4201 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4248
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V ++DG ++++WG G LG G T P +V
Sbjct: 4249 GKKV---IAIATGSLHCVCCSEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4296
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2997 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 3050
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3051 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3099
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3100 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3150
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWG----MEKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3151 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3201
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3202 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3250
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3099 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3155
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3156 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3206
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3207 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3257
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ AG V++WG + G N + T N P L+ G +
Sbjct: 3258 IVHVAVGALHCLAVTDAGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3306
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3307 GQKITRVACGSSHSV 3321
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 112/261 (42%), Gaps = 42/261 (16%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
+++ V AGG S + AG L+ WG L S +E P V GH
Sbjct: 4092 TEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHR 4145
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV VACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4146 VVDVACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---T 4196
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L
Sbjct: 4197 GLGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL- 4247
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q ++++ G H S G+V++WG E LG ++ R P L++
Sbjct: 4248 QGKKVIAIATGSLHCVCCSEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL 4299
Query: 237 GPHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4300 --QGKKVN---RVACGSAHTL 4315
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3946 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALAALRPVQLIGGEQTLFAVT 4002
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4003 ADGKL--------YATGYGAGGRLGVGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4053
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + +V V G H+
Sbjct: 4054 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGTEVVDVAAGGAHS 4104
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V VACG+
Sbjct: 4105 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDVACGS 4153
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4154 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4181
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 613 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 669
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 670 SVALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 718
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 719 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEP-SALPGLDTKHIVGI 767
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 768 ACGPAQSFAWSSCSE-WSIGLR 788
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 518 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 577
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 578 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 625
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 626 QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 87/207 (42%), Gaps = 26/207 (12%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P E P + G T +
Sbjct: 3956 YGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPVQLI----GGEQTLFAV-------TAD 4004
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T+S P ++ + Q+V++ V+V+ G H +SS G+V+S
Sbjct: 4005 GKLYATGYGAGGRLGVGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCLALSSEGEVYS 4063
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG + + L P +I + + V VA G AH+ VT G
Sbjct: 4064 WGEAE------DGKLGHGNRSPCDRPRVI-----ESLRGTEVVDVAAGGAHSACVTAAG- 4111
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
L++WG+GR G LG + D P +V
Sbjct: 4112 DLYTWGKGRYGRLGHSDSEDQLKPKLV 4138
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 467 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 525
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 526 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 578
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 579 GNYGRLGHGSSEDEAIPMLV 598
>gi|428181106|gb|EKX49971.1| hypothetical protein GUITHDRAFT_161991 [Guillardia theta CCMP2712]
Length = 658
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 136/295 (46%), Gaps = 39/295 (13%)
Query: 15 LAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVS 74
LA+D +G + WG +S G S S TPS + + V +VACG AL+
Sbjct: 122 LALDASGKIRSWGRG---ESGQLGHASFSHSSTPSIIDELASQRVKEVACGVAFSAALME 178
Query: 75 AGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTAL 134
G+ Y+WG N GQLG GDR S P+++ + N V+ + CG+ H +
Sbjct: 179 GGQ--------LYTWGCNRYGQLGQGDRTSSAIPRMLPSMNHRH---VHLMACGAAHIVV 227
Query: 135 LTHRKRPNDMLESMCWTFGLGENGQLGHG-TTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
LT + +T+G GQLGHG + L P+ V+ + + + + G H+
Sbjct: 228 LTTSRD--------VYTWGNNSYGQLGHGFRKKHCLQPKSVRVM-SGLDIKQIVAGENHS 278
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
V++S GD+++WG G + + E+ D P L+S P PK Q + + GA
Sbjct: 279 CVMTSFGDIYTWG-RGDFGQLGHGDM---ESKDI--PTLLS---PLDPKTQASL-IVSGA 328
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA----PAIVLWPPLTEEFKQDE 304
+ +T G ++SWGR G LG G + + P+ V+ P + F E
Sbjct: 329 DFIMAMTYSG-AVYSWGRNCFGQLGHGVDMHYSKSNRFPSDVISPKIISFFAASE 382
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
++ ++CGS HV+A+ +T ++WG +GQLGL R++ RP I + +
Sbjct: 388 SLSSISCGSHHVLAITEKKDTL-------FAWGRGEHGQLGLDPRDTSFRP-IPQEVKKM 439
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V C H+ ++ + +++G G GQLG+G+ + ++ E V++
Sbjct: 440 KGMIVLAAACSENHSVVVATMPGSGPKGDMKVFSWGRGSFGQLGYGSGKVPVMKETVQD 498
>gi|73952408|ref|XP_536160.2| PREDICTED: E3 ubiquitin-protein ligase HERC2 isoform 1 [Canis lupus
familiaris]
Length = 4837
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3052 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3108
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3109 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3157
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3158 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3210
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3211 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3260
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3261 -VHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3304
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 482 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 533
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 534 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 585
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 586 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 638
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 639 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 690
Query: 278 GTG 280
G G
Sbjct: 691 GHG 693
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4046 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4102
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V +V
Sbjct: 4103 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDV 4151
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4152 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4202
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4203 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4250
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4251 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4298
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 130/296 (43%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSP--VWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G G L S P P + + V KVA
Sbjct: 2999 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGLSSGTVPIPRQITALSSYVVKKVA 3052
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3053 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3101
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3102 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3152
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3153 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3203
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3204 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3252
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3101 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3157
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3158 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3208
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3209 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3259
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ AG V++WG + G N + T N P L+ G +
Sbjct: 3260 IVHVAVGALHCLAVTDAGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3308
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3309 GQKITRVACGSSHSV 3323
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4095 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4148
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V VACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4149 VDVACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4199
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4200 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4250
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4251 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4301
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4302 -QGKKVN---RVACGSAHTL 4317
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3948 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4004
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4005 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4055
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4056 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4106
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V VACG+
Sbjct: 4107 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDVACGS 4155
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4156 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4183
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 613 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 669
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 670 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 718
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 719 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 767
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 768 ACGPAQSFAWSSCSE-WSIGLR 788
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 518 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 577
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 578 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 625
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 626 QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3958 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3995
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3996 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4054
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4055 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4101
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4102 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4140
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 467 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 525
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 526 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 578
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 579 GNYGRLGHGSSEDEAIPMLV 598
>gi|321470134|gb|EFX81111.1| hypothetical protein DAPPUDRAFT_50378 [Daphnia pulex]
Length = 4502
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 131/288 (45%), Gaps = 35/288 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + + P + G VV VACG
Sbjct: 3705 AVNSGGKHCLALSSEGEVYSWGE---GEDGKLGHGNKLPCDRPRIIESLRGKDVVDVACG 3761
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H A+ + GE Y +WG G+LG GD + +L+PK++E + V +V
Sbjct: 3762 GAHSAAITALGELY--------TWGKGRYGRLGHGDSDDQLKPKLVEAL---LGYRVMDV 3810
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T +T D W++G G+ G+LG G + +P +++ L + +
Sbjct: 3811 ACGSGDAQTCAIT------DEEGGTVWSWGDGDYGKLGRGGSDGCKIPTKIESL-SGLGI 3863
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+ V+CG + +S+ G V++WG KG + G + + +
Sbjct: 3864 IKVECGSQFSVALSNNGSVYTWG--KG---------DYHRLGHGVDEHVRRPKKVMTLQG 3912
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + ++ GA H V+ TD G ++++WG G LG G T P +V
Sbjct: 3913 KKVISISTGALHCVVCTDQG-EVYTWGDNDEGQLGDGTTTGIQKPRLV 3959
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 117/261 (44%), Gaps = 46/261 (17%)
Query: 47 TPSPVWDFHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES 104
+P + H V KVA G H +AL + G + SWG ++G+LG GD S
Sbjct: 2773 SPHQITALSQHVVRKVAVHSGGRHALALTADGRVF--------SWGEGDDGKLGHGDVTS 2824
Query: 105 RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
P+ IE N + V +V GS H+A +T +T+GLGE G+LGHG
Sbjct: 2825 LDTPRCIEALNG---FRVRDVAAGSNHSAAVTSSGE--------LYTWGLGEYGRLGHGD 2873
Query: 165 TQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE 223
+ L P++V+ L Q V VS T + G V+SWG + G L R
Sbjct: 2874 NLTQLTPKRVESLVGQRVVQVSCGSRDAQTLALVEGGLVYSWG-DGDFG-----KLGRGG 2927
Query: 224 AGDAISPILI---SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ SP L+ SG G V CGA +V +T +G+ +++WG+G LG G
Sbjct: 2928 SEGCSSPCLVDKLSGLG--------VCHVECGAQFSVALTCNGH-VYTWGKGDYFRLGHG 2978
Query: 281 KTIDFFAPAIVLWPPLTEEFK 301
+ V WP L E +
Sbjct: 2979 ------SDQHVRWPTLVEGLR 2993
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 129/287 (44%), Gaps = 35/287 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG D G + S TP + +G V VA G
Sbjct: 2789 AVHSGGRHALALTADGRVFSWGE---GDDGKLGHGDVTSLDTPRCIEALNGFRVRDVAAG 2845
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE Y+WG G+LG GD ++L PK +E+ V +V
Sbjct: 2846 SNHSAAVTSSGEL--------YTWGLGEYGRLGHGDNLTQLTPKRVESLVGQR---VVQV 2894
Query: 126 TCGSFHTALLTHRKRPNDMLE-SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
+CGS L ++E + +++G G+ G+LG G ++ P V +L + +
Sbjct: 2895 SCGSRDAQTLA-------LVEGGLVYSWGDGDFGKLGRGGSEGCSSPCLVDKL-SGLGVC 2946
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
V+CG + ++ G V++WG KG L P L+ G G K
Sbjct: 2947 HVECGAQFSVALTCNGHVYTWG--KG----DYFRLGHGSDQHVRWPTLV--EGLRGKKV- 2997
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ V+ GA H + VTD G ++++WG G G G P +V
Sbjct: 2998 --IGVSVGALHCLAVTDAG-QVFAWGDNDHGQQGNGSITVNRRPTLV 3041
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 95/207 (45%), Gaps = 26/207 (12%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P + E + P ++ G +T R
Sbjct: 3617 YGWGHNHRGQLGGVEGAKVKVPTVCEALSALRP---IQLAGGEQTLFAITSDGR------ 3667
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G +S VP ++ L Q+V++ V+V+ G H +SS G+V+S
Sbjct: 3668 --VYATGYGAGGRLGIGGAESVTVPSLLESL-QHVFVKKVAVNSGGKHCLALSSEGEVYS 3724
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG + + L P +I + +D V VACG AH+ +T G
Sbjct: 3725 WGEGE------DGKLGHGNKLPCDRPRII-----ESLRGKDVVDVACGGAHSAAITALG- 3772
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+L++WG+GR G LG G + D P +V
Sbjct: 3773 ELYTWGKGRYGRLGHGDSDDQLKPKLV 3799
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 34/211 (16%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAV----YEVTCGSFHTALLTHRKRP 141
Y WG N+ QLG G + S+++ P+ ++ W V V GS L+T +
Sbjct: 2701 YVWGLNDKEQLG-GPKGSKIKVPQAVD-------WTVSLQPISVAGGSKSLFLVTQSGK- 2751
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL-VSVDCGLFHTSVVSSAG 200
+ G G NG+LG G +++ P Q+ L Q+V V+V G H +++ G
Sbjct: 2752 -------AYACGEGSNGRLGLGHSRNVNSPHQITALSQHVVRKVAVHSGGRHALALTADG 2804
Query: 201 DVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT 260
V+SWG E G + +T + I + +G + +D VA G+ H+ VT
Sbjct: 2805 RVFSWG-EGDDGKLGHGDVTSLDTPRCIEAL-------NGFRVRD---VAAGSNHSAAVT 2853
Query: 261 DDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G +L++WG G G LG G + P V
Sbjct: 2854 SSG-ELYTWGLGEYGRLGHGDNLTQLTPKRV 2883
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I V+ G S+A+ N G+++ WG D G P V G V+ ++
Sbjct: 3863 IIKVECGSQFSVALSNNGSVYTWGK---GDYHRLGHGVDEHVRRPKKVMTLQGKKVISIS 3919
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H V GE Y +WG N+ GQLG G +P+++ +
Sbjct: 3920 TGALHCVVCTDQGEVY--------TWGDNDEGQLGDGTTTGIQKPRLVAALQNKK---IN 3968
Query: 124 EVTCGSFHT 132
V+CGS HT
Sbjct: 3969 RVSCGSAHT 3977
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+C V+ G S+A+ G ++ WG D G S P+ V G V+ V+
Sbjct: 2945 VCHVECGAQFSVALTCNGHVYTWGK---GDYFRLGHGSDQHVRWPTLVEGLRGKKVIGVS 3001
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ AG+ + +WG N++GQ G G RP +++ + +
Sbjct: 3002 VGALHCLAVTDAGQVF--------AWGDNDHGQQGNGSITVNRRPTLVQGIDG---IKIT 3050
Query: 124 EVTCGSFHTALLTHRKRPN 142
V CGS H+ T + P+
Sbjct: 3051 RVACGSSHSVAWTAPEPPS 3069
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G + LA+ +AG ++ WG+ D +G S+ + P+ V G + +V
Sbjct: 2996 KVIGVSVGALHCLAVTDAGQVFAWGD---NDHGQQGNGSITVNRRPTLVQGIDGIKITRV 3052
Query: 63 ACGSEHVVA 71
ACGS H VA
Sbjct: 3053 ACGSSHSVA 3061
>gi|329663335|ref|NP_001193010.1| E3 ubiquitin-protein ligase HERC2 [Bos taurus]
gi|296490789|tpg|DAA32902.1| TPA: hect domain and RLD 3-like [Bos taurus]
Length = 4837
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3052 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3108
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3109 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3157
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3158 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3210
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3211 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3260
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3261 -VHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3304
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 482 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 533
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 534 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 585
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 586 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 638
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ +V +T DG +++SWG+G + L
Sbjct: 639 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSVALTKDG-QVYSWGKGDNQRL 690
Query: 278 GTG 280
G G
Sbjct: 691 GHG 693
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4046 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGTEVVDVAAG 4102
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V +V
Sbjct: 4103 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDV 4151
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4152 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4202
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4203 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4250
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V ++DG ++++WG G LG G T P +V
Sbjct: 4251 GKKV---IAIATGSLHCVCCSEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4298
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2999 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 3052
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3053 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3101
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3102 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3152
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3153 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3203
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3204 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3252
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3101 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3157
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3158 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3208
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3209 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3259
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ AG V++WG + G N + T N P L+ G +
Sbjct: 3260 IVHVAVGALHCLAVTDAGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3308
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3309 GQKITRVACGSSHSV 3323
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 112/261 (42%), Gaps = 42/261 (16%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
+++ V AGG S + AG L+ WG L S +E P V GH
Sbjct: 4094 TEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHR 4147
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV VACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4148 VVDVACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---T 4198
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L
Sbjct: 4199 GLGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL- 4249
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q ++++ G H S G+V++WG E LG ++ R P L++
Sbjct: 4250 QGKKVIAIATGSLHCVCCSEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL 4301
Query: 237 GPHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4302 --QGKKVN---RVACGSAHTL 4317
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3948 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALAALRPVQLIGGEQTLFAVT 4004
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4005 ADGKL--------YATGYGAGGRLGVGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4055
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + +V V G H+
Sbjct: 4056 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGTEVVDVAAGGAHS 4106
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V VACG+
Sbjct: 4107 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDVACGS 4155
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4156 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4183
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 613 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 669
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 670 SVALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 718
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 719 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEP-SALPGLDTKHIVGI 767
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 768 ACGPAQSFAWSSCSE-WSIGLR 788
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 518 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 577
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 578 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 625
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 626 QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 87/207 (42%), Gaps = 26/207 (12%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P E P + G T +
Sbjct: 3958 YGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPVQLI----GGEQTLFAV-------TAD 4006
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T+S P ++ + Q+V++ V+V+ G H +SS G+V+S
Sbjct: 4007 GKLYATGYGAGGRLGVGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCLALSSEGEVYS 4065
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG + + L P +I + + V VA G AH+ VT G
Sbjct: 4066 WGEAE------DGKLGHGNRSPCDRPRVI-----ESLRGTEVVDVAAGGAHSACVTAAG- 4113
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
L++WG+GR G LG + D P +V
Sbjct: 4114 DLYTWGKGRYGRLGHSDSEDQLKPKLV 4140
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 467 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 525
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 526 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 578
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 579 GNYGRLGHGSSEDEAIPMLV 598
>gi|426220634|ref|XP_004004519.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Ovis aries]
Length = 4836
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3052 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3108
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3109 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3157
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3158 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3210
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3211 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3260
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3261 -VHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3304
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 482 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 533
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 534 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 585
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 586 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 638
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 639 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 690
Query: 278 GTG 280
G G
Sbjct: 691 GHG 693
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4045 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGTEVVDVAAG 4101
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V +V
Sbjct: 4102 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDV 4150
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4151 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4201
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4202 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4249
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V ++DG ++++WG G LG G T P +V
Sbjct: 4250 GKKV---IAIATGSLHCVCCSEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4297
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2999 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 3052
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3053 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3101
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3102 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3152
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWG----MEKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3153 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3203
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3204 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3252
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3101 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3157
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3158 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3208
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3209 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3259
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ AG V++WG + G N + T N P L+ G +
Sbjct: 3260 IVHVAVGALHCLAVTDAGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3308
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3309 GQKITRVACGSSHSV 3323
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 112/261 (42%), Gaps = 42/261 (16%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
+++ V AGG S + AG L+ WG L S +E P V GH
Sbjct: 4093 TEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHR 4146
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV VACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4147 VVDVACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---T 4197
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L
Sbjct: 4198 GLGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL- 4248
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q ++++ G H S G+V++WG E LG ++ R P L++
Sbjct: 4249 QGKKVIAIATGSLHCVCCSEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL 4300
Query: 237 GPHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4301 --QGKKVN---RVACGSAHTL 4316
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3947 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALAALRPVQLIGGEQTLFAVT 4003
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4004 ADGKL--------YATGYGAGGRLGVGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4054
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + +V V G H+
Sbjct: 4055 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGTEVVDVAAGGAHS 4105
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V VACG+
Sbjct: 4106 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDVACGS 4154
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4155 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4182
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 613 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 669
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 670 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 718
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 719 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEP-SALPGLDTKHIVGI 767
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 768 ACGPAQSFAWSSCSE-WSIGLR 788
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 518 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 577
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 578 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 625
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 626 QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 87/207 (42%), Gaps = 26/207 (12%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P E P + G T +
Sbjct: 3957 YGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPVQLI----GGEQTLFAV-------TAD 4005
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T+S P ++ + Q+V++ V+V+ G H +SS G+V+S
Sbjct: 4006 GKLYATGYGAGGRLGVGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCLALSSEGEVYS 4064
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG + + L P +I + + V VA G AH+ VT G
Sbjct: 4065 WGEAE------DGKLGHGNRSPCDRPRVI-----ESLRGTEVVDVAAGGAHSACVTAAG- 4112
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
L++WG+GR G LG + D P +V
Sbjct: 4113 DLYTWGKGRYGRLGHSDSEDQLKPKLV 4139
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 467 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 525
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 526 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 578
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 579 GNYGRLGHGSSEDEAIPMLV 598
>gi|440904418|gb|ELR54938.1| E3 ISG15--protein ligase HERC5, partial [Bos grunniens mutus]
Length = 1009
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 97/204 (47%), Gaps = 23/204 (11%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G SLA+ G L+ WG D G S+ TP V + G +V+++
Sbjct: 124 IIQITCGDYHSLALSKGGELFAWGQN--LDGQLGVGRIFASTSTPEIVENLSGVPLVQIS 181
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G H +AL +G YSWG N+ GQLGLG ++ P IET + V
Sbjct: 182 AGEAHSMALSMSGNV--------YSWGRNDCGQLGLGHTYNKDSPSCIETLDDQK---VE 230
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
+ CG HTALLT + +TFG G+ GQLGH +TQ+ L P V L +
Sbjct: 231 FLACGGCHTALLTK--------SGLVFTFGDGKYGQLGHNSTQNELRPRLVTGLVGN-RV 281
Query: 184 VSVDCGLFHT-SVVSSAGDVWSWG 206
+ CG HT + VS G V+S+G
Sbjct: 282 TQIACGRQHTLAYVSDTGKVFSFG 305
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 34/233 (14%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRLRPKIIETFNQ 116
++++ CG H +AL GE ++WG N +GQLG+G S P+I+E
Sbjct: 123 NIIQITCGDYHSLALSKGGE--------LFAWGQNLDGQLGVGRIFASTSTPEIVENL-- 172
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S + +++ G H+ L+ + +++G + GQLG G T + P ++
Sbjct: 173 -SGVPLVQISAGEAHSMALS--------MSGNVYSWGRNDCGQLGLGHTYNKDSPSCIET 223
Query: 177 LP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q V ++ CG HT++++ +G V+++G K L N + + P L++G
Sbjct: 224 LDDQKVEFLA--CGGCHTALLTKSGLVFTFGDGK------YGQLGHNSTQNELRPRLVTG 275
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ Q+ACG HT+ D K++S+G G+ G LG G T + P
Sbjct: 276 LVGN-----RVTQIACGRQHTLAYVSDTGKVFSFGSGKEGQLGNGGTRNQLIP 323
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 19/113 (16%)
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNGP 238
++ + CG +H+ +S G++++WG + G+G AS + E + +S + +
Sbjct: 124 IIQITCGDYHSLALSKGGELFAWGQNLDGQLGVGRI-FASTSTPEIVENLSGVPL----- 177
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
VQ++ G AH++ ++ G ++SWGR G LG G T + +P+ +
Sbjct: 178 --------VQISAGEAHSMALSMSG-NVYSWGRNDCGQLGLGHTYNKDSPSCI 221
>gi|350593460|ref|XP_003133446.3| PREDICTED: E3 ubiquitin-protein ligase HERC2-like, partial [Sus
scrofa]
Length = 4060
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 2276 AVHSGGRHATALTVDGKVFSWGEG---DDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 2332
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y+WG G+LG GD ++L+PK+++ V +V
Sbjct: 2333 SSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 2381
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 2382 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 2434
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 2435 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 2484
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 2485 -VHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 2528
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 126/292 (43%), Gaps = 46/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 3270 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 3326
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y+WG G+LG D E +L+PK+++ V +V
Sbjct: 3327 GAHSACVTAAGD--------LYTWGKGRYGRLGHSDSEDQLKPKLVDALQGHR---VVDV 3375
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 3376 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 3426
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 3427 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 3474
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++WG G LG G T P +V
Sbjct: 3475 GKKV---IAIATGSLHCVCCTEDGS--YTWGDNDEGQLGDGTTNAIQRPRLV 3521
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 2223 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSSYVVKKVA 2276
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 2277 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 2325
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 2326 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 2376
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 2377 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 2427
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 2428 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 2476
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 2325 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 2381
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 2382 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 2432
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 2433 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 2483
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ AG V++WG + G N + T N P L+ G +
Sbjct: 2484 IVHVAVGALHCLAVTDAGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 2532
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 2533 GQKITRVACGSSHSV 2547
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 109/260 (41%), Gaps = 43/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 3319 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVDALQGHRV 3372
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V VACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 3373 VDVACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 3423
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 3424 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 3474
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G ++WG E LG ++ R P L++
Sbjct: 3475 GKKVIAIATGSLHCVCCTEDGS-YTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 3524
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 3525 -QGKKVN---RVACGSAHTL 3540
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3172 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALAALRPVQLIGGEQTLFAVT 3228
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 3229 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 3279
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 3280 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 3330
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V VACG+
Sbjct: 3331 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVDALQGH-----RVVDVACGS 3379
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 3380 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 3407
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 90/209 (43%), Gaps = 30/209 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P E P + G T +
Sbjct: 3182 YGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPVQLI----GGEQTLFAV-------TAD 3230
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T+S P ++ + Q+V++ V+V+ G H +SS G+V+S
Sbjct: 3231 GKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCLALSSEGEVYS 3289
Query: 205 WG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG E G LG + R +++ I + V VA G AH+ VT
Sbjct: 3290 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAAGGAHSACVTAA 3336
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G L++WG+GR G LG + D P +V
Sbjct: 3337 G-DLYTWGKGRYGRLGHSDSEDQLKPKLV 3364
>gi|3414809|gb|AAC31431.1| rjs [Mus musculus]
Length = 4836
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3052 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3108
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3109 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3157
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CG+ L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3158 ACGTRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3210
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3211 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3260
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3261 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3304
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 116/242 (47%), Gaps = 38/242 (15%)
Query: 46 FTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 483 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDTV 534
Query: 104 SRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
PK+I F+ + + V + CGS ++A +T E +T+G G G+LGH
Sbjct: 535 PLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLGH 586
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
G+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 587 GSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KLG 639
Query: 221 RNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
R + +P LI K Q D ++V CG+ ++ +T DG +++SWG+G + LG
Sbjct: 640 RGGSDGCKTPKLIE-------KLQDLDVIKVRCGSQFSIALTKDG-QVYSWGKGDNQRLG 691
Query: 279 TG 280
G
Sbjct: 692 LG 693
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 129/292 (44%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4045 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4101
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 4102 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VIDI 4150
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + + VP ++ L + +
Sbjct: 4151 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGSKVPMKIDSLTG-LGV 4201
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4202 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4249
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4250 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4297
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 130/296 (43%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSP--VWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G G + S P P + + V KVA
Sbjct: 2999 AGGSKSLFAVTVEGKVYSCGE------ATNGRLGLGMSSGTVPIPRQITALSSYVVKKVA 3052
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3053 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3101
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3102 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3152
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3153 RVIQVACGTRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3203
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3204 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3252
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 3101 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3157
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG+ L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3158 ACGTRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3208
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3209 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3259
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3260 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3308
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3309 GQKITRVACGSSHSV 3323
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4094 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4147
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4148 IDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGSKVPMKIDSL---TG 4198
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4199 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4249
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4250 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4300
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4301 -QGKKVN---RVACGSAHTL 4316
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3947 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4003
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4004 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4054
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4055 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4105
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H + +ACG+
Sbjct: 4106 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVIDIACGS 4154
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4155 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4182
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 80/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + V+KV CGS+
Sbjct: 613 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQF 669
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LGLG E PK++E V +V G
Sbjct: 670 SIALTKDGQVY--------SWGKGDNQRLGLGTEEHVRYPKLLEGLQGKK---VIDVAAG 718
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 719 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPTA-LPGLDSKHIVGI 767
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 768 ACGPAQSFAWSSCSE-WSIGLR 788
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 518 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 577
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 578 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 625
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 626 QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3957 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3994
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3995 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4053
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4054 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4100
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4101 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4139
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 467 LSRNGRVYTQAYNSDMLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 525
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 526 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 578
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 579 GNYGRLGHGSSEDEAIPMLV 598
>gi|301113129|ref|XP_002998335.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262112629|gb|EEY70681.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 2353
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 143/333 (42%), Gaps = 56/333 (16%)
Query: 43 VSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S P + V V+C H V G Y++G N+ GQLG D
Sbjct: 686 TSESVPKIIRSLENKIVRLVSCSYYHTVLACEDGNLQN-----LYTFGRNDYGQLGHNDS 740
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
R P+ +E S + V CG +HT ++T + + FG + GQLG
Sbjct: 741 IDRKIPQFVEAL---SDQQIVSVACGQYHTMVVTASGK--------AFAFGKNDYGQLGI 789
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNAS 218
T ++ L P QV+ + + + CG +HT + S ++++G + GLG NAS
Sbjct: 790 DTMENQLAPVQVRGGLERQECLEIRCGYYHTIALCSGAHLFAFGRNDYGQLGLGRS-NAS 848
Query: 219 LTRN----EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRS 274
T N + + + ++ G +D V++ACG HT+ V+D+G ++ +GR
Sbjct: 849 STSNLQLQQQRFSNARLIDELEG------KDIVRIACGCYHTIAVSDNGV-MYVFGRNNH 901
Query: 275 GVLGTGKTI---------DFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLEGAEER 325
G LGTG T DF + L + F + TGG +D+ +D E+
Sbjct: 902 GQLGTGDTTERVYPFPIDDFVGKRVAL---VAAGFYHTVVLTGGKEDDKNERD--SGNEK 956
Query: 326 DE----------KLSSAMEEMKLLQSKLSVMER 348
+E ++ + +++LQ+ LS M R
Sbjct: 957 EELAACFSSPRLQMYMILATLRILQANLSQMLR 989
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 99/235 (42%), Gaps = 32/235 (13%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG--DRESRLRPKIIETFNQ 116
++++ G+EH V L + G+ + + G N+NGQ G G R S L E
Sbjct: 597 IIQIGAGNEHTVVLTADGKVF--------TCGYNDNGQCGQGGTARVSHLS----EIPKM 644
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
DS + G HT L++ R T G GQLGHG T S VP+ ++
Sbjct: 645 DSGSSQAHAYNGCEHTILVSTDGR--------VATCGYNYRGQLGHGNTTSESVPKIIRS 696
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L + + V C +HT + G++ + G L N++ D P +
Sbjct: 697 LENKIVRL-VSCSYYHTVLACEDGNLQNL---YTFGRNDYGQLGHNDSIDRKIPQFVEAL 752
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
Q V VACG HT++VT G K +++G+ G LG + AP V
Sbjct: 753 SD-----QQIVSVACGQYHTMVVTASG-KAFAFGKNDYGQLGIDTMENQLAPVQV 801
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 96/232 (41%), Gaps = 39/232 (16%)
Query: 71 ALVSAGETYKGED---LVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC 127
A VS T ED +S G N+ G+LG GD SR + I+ Q + ++
Sbjct: 546 AFVSNDTTIFHEDEGEREVWSCGQNSYGELGHGDTASRKSFERIQALQQKE---IIQIGA 602
Query: 128 GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVD 187
G+ HT +LT + +T G +NGQ G G T ++ ++
Sbjct: 603 GNEHTVVLT--------ADGKVFTCGYNDNGQCGQGGTARVSHLSEIPKMDSGSSQAHAY 654
Query: 188 CGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
G HT +VS+ G V + G + G G N +++ I+ S
Sbjct: 655 NGCEHTILVSTDGRVATCGYNYRGQLGHG---------NTTSESVPKIIRS--------L 697
Query: 244 QDPV--QVACGAAHTVLVTDDG--YKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ + V+C HTVL +DG L+++GR G LG +ID P V
Sbjct: 698 ENKIVRLVSCSYYHTVLACEDGNLQNLYTFGRNDYGQLGHNDSIDRKIPQFV 749
>gi|403381060|ref|ZP_10923117.1| regulator of chromosome condensation rcc1, partial [Paenibacillus
sp. JC66]
Length = 851
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 134/288 (46%), Gaps = 45/288 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S I ++ AG SLA+ +G ++ +GN +S G + TP + V
Sbjct: 127 LSDIQAIAAGDFHSLALTKSGDVYSFGNG----TSGLGHGNTEDQSTPKKIESLS--DVQ 180
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +AL +G+ YS+G G+LG GD +S+L PK IE +
Sbjct: 181 AIAAGGNHSLALTKSGD--------VYSFGFGLFGRLGHGDTDSQLEPKKIEDLSD---- 228
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ + G H+ LT ++FG G +GQLGHG T++ L P+++++L
Sbjct: 229 -IQAIAAGGNHSLALTKSGD--------VYSFGWGLHGQLGHGDTENQLTPKKIEDLSD- 278
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ +V G H+ ++ +G+V+S+G L + D ++P I G
Sbjct: 279 --IQAVAAGANHSLALTKSGEVYSFGRGN------TGQLGHGDTDDQLTPKKIEG----- 325
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+D +A G H++ +T G ++S+G G SG LG G T + P
Sbjct: 326 --LKDIQAIAAGDFHSLALTKSG-DVYSFGNGTSG-LGHGDTANQLEP 369
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 117/273 (42%), Gaps = 75/273 (27%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ +A G+ H +AL +G+ YS+G G+LG G+ +S+L PK IE +
Sbjct: 80 IQAIAAGTNHSLALTKSGD--------VYSFGFGLFGRLGHGNTDSQLEPKKIEGLSD-- 129
Query: 119 PWAVYEVTCGSFHTALLTHR--------------------KRPNDMLESM---------- 148
+ + G FH+ LT + +ES+
Sbjct: 130 ---IQAIAAGDFHSLALTKSGDVYSFGNGTSGLGHGNTEDQSTPKKIESLSDVQAIAAGG 186
Query: 149 -----------CWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
++FG G G+LGHG T S L P+++++L + ++ G H+ ++
Sbjct: 187 NHSLALTKSGDVYSFGFGLFGRLGHGDTDSQLEPKKIEDLSD---IQAIAAGGNHSLALT 243
Query: 198 SAGDVWS--WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
+GDV+S WG+ LG + + ++P I D VA GA H
Sbjct: 244 KSGDVYSFGWGLHGQLG--------HGDTENQLTPKKIE-------DLSDIQAVAAGANH 288
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
++ +T G +++S+GRG +G LG G T D P
Sbjct: 289 SLALTKSG-EVYSFGRGNTGQLGHGDTDDQLTP 320
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 144/343 (41%), Gaps = 76/343 (22%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S I ++ AG SLA+ +G ++ +G G + S P + +
Sbjct: 77 LSDIQAIAAGTNHSLALTKSGDVYSFGFGLF---GRLGHGNTDSQLEPKKIEGLS--DIQ 131
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +AL +G+ YS+G +G LG G+ E + PK IE+ +
Sbjct: 132 AIAAGDFHSLALTKSGD--------VYSFGNGTSG-LGHGNTEDQSTPKKIESLSD---- 178
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G H+ LT ++FG G G+LGHG T S L P+++++L
Sbjct: 179 -VQAIAAGGNHSLALTKSGD--------VYSFGFGLFGRLGHGDTDSQLEPKKIEDLSD- 228
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWS--WGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ ++ G H+ ++ +GDV+S WG+ LG + + ++P I
Sbjct: 229 --IQAIAAGGNHSLALTKSGDVYSFGWGLHGQLG--------HGDTENQLTPKKIE---- 274
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTE 298
D VA GA H++ +T G +++S+GRG +G LG G T
Sbjct: 275 ---DLSDIQAVAAGANHSLALTKSG-EVYSFGRGNTGQLGHGDT---------------- 314
Query: 299 EFKQDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQS 341
DD++ K +EG ++ + + L +S
Sbjct: 315 ------------DDQLTPKKIEGLKDIQAIAAGDFHSLALTKS 345
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 98/216 (45%), Gaps = 34/216 (15%)
Query: 75 AGETYKGEDLV-CYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
A E+ +LV +S+G G+LG GD ++L PK IE + + + G+ H+
Sbjct: 37 AQESETNANLVSVFSFGMGMYGKLGHGDTANQLAPKKIEGLSD-----IQAIAAGTNHSL 91
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
LT ++FG G G+LGHG T S L P++++ L + ++ G FH+
Sbjct: 92 ALTKSGD--------VYSFGFGLFGRLGHGNTDSQLEPKKIEGLSD---IQAIAAGDFHS 140
Query: 194 SVVSSAGDVWSWGM-EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACG 252
++ +GDV+S+G GLG D +P I D +A G
Sbjct: 141 LALTKSGDVYSFGNGTSGLG--------HGNTEDQSTPKKIE-------SLSDVQAIAAG 185
Query: 253 AAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
H++ +T G ++S+G G G LG G T P
Sbjct: 186 GNHSLALTKSG-DVYSFGFGLFGRLGHGDTDSQLEP 220
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 19/135 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S I +V AG SLA+ +G ++ +G ++ G TP + +
Sbjct: 276 LSDIQAVAAGANHSLALTKSGEVYSFGRG---NTGQLGHGDTDDQLTPKKIEGLK--DIQ 330
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +AL +G+ YS+G +G LG GD ++L PK IE
Sbjct: 331 AIAAGDFHSLALTKSGD--------VYSFGNGTSG-LGHGDTANQLEPKKIEGLTD---- 377
Query: 121 AVYEVTCGSFHTALL 135
+ + G+ H+ L
Sbjct: 378 -IQAIAAGANHSLAL 391
>gi|444911351|ref|ZP_21231526.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
gi|444718109|gb|ELW58925.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
Length = 1085
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 118/287 (41%), Gaps = 43/287 (14%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S + V AGG SLA+ + G +W WGN + G P PV + V
Sbjct: 737 SAMKGVAAGGSHSLAVRSDGTVWAWGNNGSGELGDGTGLQ-----RPRPVQVQGLGSAVA 791
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
V+ G+ H +A+ S D ++WG N+ GQLG G +R P + N
Sbjct: 792 VSAGTNHSLAVQS--------DGTVWAWGGNSQGQLGDGTGITRYVPVRVSGLN-----G 838
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V V+ GS H+ L + W +G GQLG T+ LVP QV P
Sbjct: 839 VMAVSAGSAHSLALRS--------DGTVWAWGYNFYGQLGDATSTQRLVPIQV---PGLT 887
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+VS+ G H+ V S G VW+WG L + R+ P+ + P
Sbjct: 888 GVVSIAAGTHHSLAVRSDGTVWAWGYNFYGQLGDGTKIQRSP------PVQV-------P 934
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
V VA G H++ V +G +W+WG G LG G T P
Sbjct: 935 GLAGMVSVAAGTYHSLAVHSNG-TVWAWGYNNHGQLGDGTTTQRLLP 980
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 118/291 (40%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + ++ AG SLA+D G++W WG + G + TP+ G VV
Sbjct: 586 LSGVVALAAGNGYSLAVDAQGSVWAWGYNGM---GQLGDGTTTPRVTPTQAPALSG--VV 640
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +AL + D V ++WG N+ GQLG R P +
Sbjct: 641 ALAAGDSHSLALRA--------DGVAWAWGGNDQGQLGDATTLERSTPAAVPGLAH---- 688
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G+ H+ +L + ++G GQLG GT+ VP QV P
Sbjct: 689 -VVALAAGNAHSLVL--------HADGTSSSWGNNAYGQLGDGTSTLHPVPVQV---PGP 736
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ V G H+ V S G VW+WG L L R P+ + G G
Sbjct: 737 SAMKGVAAGGSHSLAVRSDGTVWAWGNNGSGELGDGTGLQRPR------PVQVQGLG--- 787
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V V+ G H++ V DG +W+WG G LG G I + P V
Sbjct: 788 ----SAVAVSAGTNHSLAVQSDG-TVWAWGGNSQGQLGDGTGITRYVPVRV 833
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 123/291 (42%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ ++ S+ AGG SLA+ G W WG+ DS + G SS P +
Sbjct: 336 VGRMKSIAAGGAHSLAMRADGITWAWGD----DSQGQLGDGQ-SSQQLRPARVLGQRIRM 390
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+ G+ H +AL + D ++WG N GQLG G R P +
Sbjct: 391 PLGTGNRHSLALHA--------DGTVWAWGVNTAGQLGDGTDLPRTLPVQVPGLA----- 437
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V+ ++ + H+ L R + W +G GQLG GTT L+P QV P
Sbjct: 438 GVHTLSATTSHS--LAARA------DGTVWAWGDNAFGQLGDGTTTQRLLPVQV---PGL 486
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ +V H+ VS G VW+WG L +L+R ++P+ +
Sbjct: 487 AGVDTVSSMHQHSLAVSRDGTVWAWGFNGSGRLGDGTTLSR------LTPVQV------- 533
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P V VA G+ H++ + DG +W+WG +G LG G T+ +P V
Sbjct: 534 PGLSSMVAVAAGSTHSLALRADG-TVWAWGDNSNGALGDGTTLRRLSPVQV 583
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 116/288 (40%), Gaps = 44/288 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ +V AG SLA+ + G +W WG G + ++ + P V +G V+
Sbjct: 786 LGSAVAVSAGTNHSLAVQSDGTVWAWGGN---SQGQLGDGTGITRYVPVRVSGLNG--VM 840
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V+ GS H +AL S D ++WG N GQLG RL P +
Sbjct: 841 AVSAGSAHSLALRS--------DGTVWAWGYNFYGQLGDATSTQRLVPIQVPGLT----- 887
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G+ H+ L R + W +G GQLG GT P QV P
Sbjct: 888 GVVSIAAGTHHS--LAVRS------DGTVWAWGYNFYGQLGDGTKIQRSPPVQV---PGL 936
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+VSV G +H+ V S G VW+WG L + R + P+ IS +
Sbjct: 937 AGMVSVAAGTYHSLAVHSNGTVWAWGYNNHGQLGDGTTTQR------LLPVPISSS---- 986
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
V A H+++V DG +W WG + LG G T D P
Sbjct: 987 ----SGVIAAAANWHSLVVRTDG-TVWGWGSNNASQLGDGSTSDRKMP 1029
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 123/294 (41%), Gaps = 50/294 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + +V AG SLA+ + G +W WG L D+++ P V G
Sbjct: 836 LNGVMAVSAGSAHSLALRSDGTVWAWGYNFYGQLGDATS------TQRLVPIQVPGLTG- 888
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +A G+ H +A+ S D ++WG N GQLG G + R P +
Sbjct: 889 -VVSIAAGTHHSLAVRS--------DGTVWAWGYNFYGQLGDGTKIQRSPPVQVPGLA-- 937
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ V G++H+ L H W +G +GQLG GTT L+P +
Sbjct: 938 ---GMVSVAAGTYHS-LAVHSN-------GTVWAWGYNNHGQLGDGTTTQRLLPVPISSS 986
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ + +H+ VV + G VW WG L ++ R +P +
Sbjct: 987 SGVIAAAAN----WHSLVVRTDGTVWGWGSNNASQLGDGSTSDRKMP----TPSSV---- 1034
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P+G + ++ GA H++ + DG +W+WG G SG LG G PA V
Sbjct: 1035 PNGVR-----SISSGANHSLALRSDG-TVWAWGFGNSGQLGDGVMSMRLVPAGV 1082
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 121/294 (41%), Gaps = 49/294 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S + +V AG SLA+ G +W WG N L D +T + +P V G
Sbjct: 536 LSSMVAVAAGSTHSLALRADGTVWAWGDNSNGALGDGTT------LRRLSPVQVPGLSG- 588
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +A G+ + +A+ + G ++WG N GQLG G R+ P +
Sbjct: 589 -VVALAAGNGYSLAVDAQGS--------VWAWGYNGMGQLGDGTTTPRVTPTQAPALS-- 637
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + G H+ L + + W +G + GQLG TT P V
Sbjct: 638 ---GVVALAAGDSHSLAL--------RADGVAWAWGGNDQGQLGDATTLERSTPAAV--- 683
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P ++V++ G H+ V+ + G SWG NA + + P+ + G
Sbjct: 684 PGLAHVVALAAGNAHSLVLHADGTSSSWGN--------NAYGQLGDGTSTLHPVPVQVPG 735
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P K VA G +H++ V DG +W+WG SG LG G + P V
Sbjct: 736 PSAMK-----GVAAGGSHSLAVRSDG-TVWAWGNNGSGELGDGTGLQRPRPVQV 783
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 123/295 (41%), Gaps = 51/295 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + ++ AG SL + G WGN L D + S+ P PV G
Sbjct: 686 LAHVVALAAGNAHSLVLHADGTSSSWGNNAYGQLGDGT--------STLHPVPV-QVPGP 736
Query: 58 TVVK-VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+ +K VA G H +A+ S D ++WG N +G+LG G R RP ++
Sbjct: 737 SAMKGVAAGGSHSLAVRS--------DGTVWAWGNNGSGELGDGTGLQRPRPVQVQGLG- 787
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ V+ G+ H+ + + W +G GQLG GT + VP +V
Sbjct: 788 ----SAVAVSAGTNHSLAVQS--------DGTVWAWGGNSQGQLGDGTGITRYVPVRVSG 835
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L +++V G H+ + S G VW+WG G +A+ T+ + PI +
Sbjct: 836 LNG---VMAVSAGSAHSLALRSDGTVWAWGYNF-YGQLGDATSTQR-----LVPIQV--- 883
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P V +A G H++ V DG +W+WG G LG G I P V
Sbjct: 884 ----PGLTGVVSIAAGTHHSLAVRSDG-TVWAWGYNFYGQLGDGTKIQRSPPVQV 933
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 136/333 (40%), Gaps = 75/333 (22%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + ++ G SLA+ + G +W WG+ G S S P VW +G VV
Sbjct: 86 LDSVVALAVGYQHSLALRSDGTVWAWGDNFF---GQLGDGSDAQSQVPIQVWSLNG--VV 140
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +AL+S G ++WG N +GQLG + P ++ +
Sbjct: 141 AIAAGDHHSLALLSDGS--------VWAWGYNAHGQLGDDTTVASPLPVQVQGLS----- 187
Query: 121 AVYEVTCGSFHT-ALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKEL 177
V ++ GS H+ A+L+ K W G+N GQLG G++ P V L
Sbjct: 188 GVVALSAGSTHSLAVLSDGK-------VKAW----GDNYYGQLGDGSSTERWTPVLVSSL 236
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN--------------- 222
+ SV G FH+ + S G V +WG E G G +S TR
Sbjct: 237 ---TGVKSVVAGTFHSLALCSDGTVRAWG-ENGSGQLGISSTTRRPVPVVVPGLTNVQAL 292
Query: 223 EAGDAISPILIS-------GNGPHG-------PKFQDPVQV---------ACGAAHTVLV 259
AG A S L S GN HG + PVQV A G AH++ +
Sbjct: 293 AAGSAHSLALRSDGTVRAWGNNDHGQVGNGTISQQLTPVQVPGVGRMKSIAAGGAHSLAM 352
Query: 260 TDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
DG W+WG G LG G++ PA VL
Sbjct: 353 RADGIT-WAWGDDSQGQLGDGQSSQQLRPARVL 384
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 118/293 (40%), Gaps = 47/293 (16%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPS-PVWDFHGHTVVKVACG 65
V AG SL + + G +W WG+ +T G + T PV +VV +A G
Sbjct: 42 VAAGAAHSLMLRSDGTVWAWGD------NTYGQLGDGTGITQRLPVRVQSLDSVVALAVG 95
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
+H +AL S D ++WG N GQLG G P + + N V +
Sbjct: 96 YQHSLALRS--------DGTVWAWGDNFFGQLGDGSDAQSQVPIQVWSLN-----GVVAI 142
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
G H+ L + + W +G +GQLG TT ++ +P QV+ L V L
Sbjct: 143 AAGDHHSLAL--------LSDGSVWAWGYNAHGQLGDDTTVASPLPVQVQGLSGVVAL-- 192
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
G H+ V S G V +WG L +S R +P+L+S
Sbjct: 193 -SAGSTHSLAVLSDGKVKAWGDNYYGQLGDGSSTER------WTPVLVS-------SLTG 238
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTE 298
V G H++ + DG + +WG SG LG T P +V P LT
Sbjct: 239 VKSVVAGTFHSLALCSDG-TVRAWGENGSGQLGISSTTRRPVPVVV--PGLTN 288
>gi|328715082|ref|XP_001946768.2| PREDICTED: e3 ubiquitin-protein ligase HERC2-like [Acyrthosiphon
pisum]
Length = 4404
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 33/275 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ G ++ WG+ D G + V+ P V ++ +ACG
Sbjct: 3637 AVNSGGRHCLALSTTGEVYAWGD---GDDGKLGLGNRVTHSKPQLVQSLSDKCIIDIACG 3693
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H A+ G Y+WG G+LG GD E L PK+++ + V +V
Sbjct: 3694 GFHSAAISRYGHL--------YTWGKGRYGRLGHGDYEDYLYPKLVQGLIN---YHVVKV 3742
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS + N W++G G+ G+LGH ++S +P +++ L ++
Sbjct: 3743 ACGSGDAQTMCVTSDDN------VWSWGDGDYGKLGHNISESCKLPCKIESLSGK-GIIQ 3795
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
+DCG + +S+ G +++WG L +S E P+ +G G K
Sbjct: 3796 IDCGSQFSVALSANGTLYTWGKGDYFRLGHGSS----EHVRKPKPV----SGLQGKKI-- 3845
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
VQ + G+ H + +TDDG ++++WG G LG G
Sbjct: 3846 -VQFSTGSLHVLALTDDG-EVYAWGDNDEGQLGDG 3878
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 34/238 (14%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
TP V + V V G H +AL + GE Y +WG ++G+LGLG+R +
Sbjct: 3623 TPQLVQGLNNIIKVAVNSGGRHCLALSTTGEVY--------AWGDGDDGKLGLGNRVTHS 3674
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
+P+++++ S + ++ CG FH+A ++ +T+G G G+LGHG +
Sbjct: 3675 KPQLVQSL---SDKCIIDIACGGFHSAAISRYGH--------LYTWGKGRYGRLGHGDYE 3723
Query: 167 SALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA 224
L P+ V+ L Y ++V V CG T V+S +VWSWG + G L N +
Sbjct: 3724 DYLYPKLVQGLINY-HVVKVACGSGDAQTMCVTSDDNVWSWG-DGDYG-----KLGHNIS 3776
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
P I G +Q+ CG+ +V ++ +G L++WG+G LG G +
Sbjct: 3777 ESCKLPCKIESLSGKG-----IIQIDCGSQFSVALSANG-TLYTWGKGDYFRLGHGSS 3828
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 125/290 (43%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G + WG+ + G +++ TP + V +ACG
Sbjct: 2684 AVHSGGKHAMALSLDGKVLSWGD---GEDGKLGHGDILTLDTPKLIDSLLAKRVFYIACG 2740
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S GE Y +WG G+LG D S+ PK+++ F + + +V
Sbjct: 2741 SAHSAAITSDGELY--------TWGQGQYGRLGHSDEVSQHTPKLVKEFVGKN---ITQV 2789
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N +++G G+ G+LG G + P++V+ L + +V
Sbjct: 2790 ACGSRDAQTLALDSEGN------VYSWGDGDFGKLGRGGSDGCCTPQKVERLVGH-RVVQ 2842
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + +++ G VW+WG KG LGL + R + + + I
Sbjct: 2843 IECGAQFSVALTATGQVWTWG--KGEYYRLGLGRGEHVRRPTLVNQLKLVTID------- 2893
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A G H + V+ G ++ WG G G G T P +V
Sbjct: 2894 ------HIAVGTLHCIAVSTQG-DVYCWGDNDHGQQGNGTTNANQEPRLV 2936
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 105/234 (44%), Gaps = 34/234 (14%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V G +H +AL G+ SWG +G+LG GD + PK+I++
Sbjct: 2683 VAVHSGGKHAMALSLDGKVL--------SWGDGEDGKLGHGDILTLDTPKLIDSLLAKR- 2733
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V+ + CGS H+A +T + +T+G G+ G+LGH S P+ VKE
Sbjct: 2734 --VFYIACGSAHSAAITS--------DGELYTWGQGQYGRLGHSDEVSQHTPKLVKEFVG 2783
Query: 180 YVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ V CG T + S G+V+SWG + G L R + +P +
Sbjct: 2784 K-NITQVACGSRDAQTLALDSEGNVYSWG-DGDFG-----KLGRGGSDGCCTPQKVERLV 2836
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
H VQ+ CGA +V +T G ++W+WG+G LG G+ P +V
Sbjct: 2837 GHRV-----VQIECGAQFSVALTATG-QVWTWGKGEYYRLGLGRGEHVRRPTLV 2884
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 32/220 (14%)
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
T+ G V Y WG N+ GQL D +P ++ + P V F A+ ++
Sbjct: 3538 TWGGNGQVVYVWGHNHRGQLACMDSSQVKKPLACDSLSVLKPTQVIGGEQTMF--AVTSY 3595
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHG----TTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
K + G E+G+LG G + P+ V+ L + V+V+ G H
Sbjct: 3596 GK---------VYASGYTESGRLGIGPYNPKNPYVVTPQLVQGLNNIIK-VAVNSGGRHC 3645
Query: 194 SVVSSAGDVWSWGM--EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+S+ G+V++WG + LGL + ++ + ++S I + +AC
Sbjct: 3646 LALSTTGEVYAWGDGDDGKLGLGNRVTHSKPQLVQSLSDKCI-------------IDIAC 3692
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G H+ ++ G+ L++WG+GR G LG G D+ P +V
Sbjct: 3693 GGFHSAAISRYGH-LYTWGKGRYGRLGHGDYEDYLYPKLV 3731
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 104/255 (40%), Gaps = 36/255 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + GG S AI G L+ WG G P V + VVKVA
Sbjct: 3687 IIDIACGGFHSAAISRYGHLYTWGK---GRYGRLGHGDYEDYLYPKLVQGLINYHVVKVA 3743
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CGS + D +SWG + G+LG ES P IE+ S +
Sbjct: 3744 CGSGDAQTMCVTS------DDNVWSWGDGDYGKLGHNISESCKLPCKIESL---SGKGII 3794
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
++ CGS + L+ N L +T+G G+ +LGHG+++ P+ V L Q +
Sbjct: 3795 QIDCGSQFSVALS----ANGTL----YTWGKGDYFRLGHGSSEHVRKPKPVSGL-QGKKI 3845
Query: 184 VSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V G H ++ G+V++WG E LG + R A+ G
Sbjct: 3846 VQFSTGSLHVLALTDDGEVYAWGDNDEGQLGDGTAHPIARPRPIAALK----------GK 3895
Query: 242 KFQDPVQVACGAAHT 256
+ Q QV+CG+AH+
Sbjct: 3896 RIQ---QVSCGSAHS 3907
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 102/268 (38%), Gaps = 46/268 (17%)
Query: 25 MWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDL 84
M N +S+ F V F P P K+ SE+ V
Sbjct: 2556 MIINQEFVSNSSTPQFDAVQEFPPQP------EVESKIRVDSEYAV-------------- 2595
Query: 85 VCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDM 144
Y WG N+ GQLG + RP E P E+ GS ++++
Sbjct: 2596 --YVWGLNDKGQLGGLNGSKVKRPTFNEALTALKP---IEIVGGSKSLFIVSN------- 2643
Query: 145 LESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVDCGLFHTSVVSSAGDVW 203
E + G G+LG P Q+ L Q+V V+V G H +S G V
Sbjct: 2644 -EGKVFVCGDSSGGRLGIPFCGKVSSPRQIPGLSQFVIKTVAVHSGGKHAMALSLDGKVL 2702
Query: 204 SWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
SWG + L LT + +P LI + +ACG+AH+ +T DG
Sbjct: 2703 SWGDGEDGKLGHGDILTLD------TPKLIDSLLAKRVFY-----IACGSAHSAAITSDG 2751
Query: 264 YKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+L++WG+G+ G LG + P +V
Sbjct: 2752 -ELYTWGQGQYGRLGHSDEVSQHTPKLV 2778
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 23/176 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+LA+D+ G ++ WG+ D G TP V GH VV++ CG++ VAL
Sbjct: 2798 TLALDSEGNVYSWGD---GDFGKLGRGGSDGCCTPQKVERLVGHRVVQIECGAQFSVALT 2854
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ ++WG +LGLG E RP ++ NQ + + G+ H
Sbjct: 2855 ATGQV--------WTWGKGEYYRLGLGRGEHVRRPTLV---NQLKLVTIDHIAVGTLHCI 2903
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCG 189
++ + + CW G ++GQ G+GTT + P V + + V CG
Sbjct: 2904 AVSTQG------DVYCW--GDNDHGQQGNGTTNANQEPRLVTNFNN-IKINRVGCG 2950
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 14/127 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ ++ G S+A+ G +W WG G + P+ V T+ +
Sbjct: 2839 RVVQIECGAQFSVALTATGQVWTWGKGEYYRLGLGRGEHVRR---PTLVNQLKLVTIDHI 2895
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G+ H +A+ + G+ Y WG N++GQ G G + P+++ FN +
Sbjct: 2896 AVGTLHCIAVSTQGDV--------YCWGDNDHGQQGNGTTNANQEPRLVTNFNN---IKI 2944
Query: 123 YEVTCGS 129
V CGS
Sbjct: 2945 NRVGCGS 2951
Score = 42.0 bits (97), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 101/263 (38%), Gaps = 53/263 (20%)
Query: 15 LAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF-TPSPVWDFHGHTVVKVACGSEHVVALV 73
LA+ G ++ WG + + G SSF TP P+ F VV V+CG + A+
Sbjct: 505 LAVTQKGEVYSWG---VNEFGALGHGQKYSSFPTPEPIVAFSKLIVVMVSCGKDFCAAVT 561
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG-SFHT 132
G+ Y WG L P+++++ S W V +V+CG S +
Sbjct: 562 EDGKLYM--------WGK------ILHSSNCCYTPELVKSI---SEWHVSKVSCGSSINN 604
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVDCGLF 191
L R E ++F N G ++P + + Y +VS+ C
Sbjct: 605 TLALSR-------EGYVFSFEY-RNSDRGCDDKSLNVIPSMI----VFDYEIVSIYCHND 652
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV-- 249
+V+ A +V++WG L N S N P KF QV
Sbjct: 653 VNAVIDCANNVFTWGRGNNNMLGHNNSFRVNR--------------PKEVKFLSGKQVTS 698
Query: 250 -ACGAAHTVLVTDDGYKLWSWGR 271
+ + + +TD G +++ WG+
Sbjct: 699 LSLADDYILALTDTG-QVYCWGQ 720
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 101/260 (38%), Gaps = 41/260 (15%)
Query: 35 STEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNN 94
+T G +S S +F ++ V S V T KGE YSWG N
Sbjct: 467 TTSGTLHFISYSIDS--LNFEEKQMMNVPMKSVDVYDETYLAVTQKGE---VYSWGVNEF 521
Query: 95 GQLGLGDRESRL-RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFG 153
G LG G + S P+ I F S V V+CG A +T + W
Sbjct: 522 GALGHGQKYSSFPTPEPIVAF---SKLIVVMVSCGKDFCAAVTEDGKL------YMW--- 569
Query: 154 LGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCG--LFHTSVVSSAGDVWSWGMEKGL 211
G++ H ++ PE VK + ++ ++ V CG + +T +S G V+S+
Sbjct: 570 ----GKILH-SSNCCYTPELVKSISEW-HVSKVSCGSSINNTLALSREGYVFSFEYRNSD 623
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
C + SL + P +I + + V + C ++ D +++WGR
Sbjct: 624 RGCDDKSLN-------VIPSMIVFD-------YEIVSIYCHNDVNAVI-DCANNVFTWGR 668
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G + +LG + P V
Sbjct: 669 GNNNMLGHNNSFRVNRPKEV 688
>gi|242054133|ref|XP_002456212.1| hypothetical protein SORBIDRAFT_03g032200 [Sorghum bicolor]
gi|241928187|gb|EES01332.1| hypothetical protein SORBIDRAFT_03g032200 [Sorghum bicolor]
Length = 1056
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 133/292 (45%), Gaps = 36/292 (12%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF----SLVSSFTPSPVW-DFHGHTVVK 61
+ G + AI +G L+ WG D S G + S + P V G V+
Sbjct: 314 ISCGEFHTCAISASGDLFNWG-----DGSYHAGLLGYDTGASHWLPKRVSGPLEGLQVLF 368
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VACGS H + S G Y++G G LG G+RES PK +E N +
Sbjct: 369 VACGSWHSALITSTGR--------LYTFGDGTFGALGHGNRESSAYPKEVEALNG---FR 417
Query: 122 VYEVTCGSFHTALLTHRKRPN--DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+V CG +H+A + +M+ +T+G G+ +LG G ++ L+P V+ L +
Sbjct: 418 TIKVACGVWHSAAIVEATVQTGMNMVSKKLYTWGDGDKNRLGQGDKEARLIPTCVQALLE 477
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ + + CG T ++++G V++ +G N L N D P L+ H
Sbjct: 478 HNFH-QLACGQNMTVALATSGHVYT------MGSSDNGQLG-NPKSDGKQPCLVKDKLAH 529
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +++CGAAH ++T ++++WG G +G LG G D AP IV
Sbjct: 530 ----ELVEEISCGAAHVAVLTSRS-EVYTWGMGANGRLGHGDLNDKKAPTIV 576
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 113/260 (43%), Gaps = 30/260 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
Q+ V G S I + G L+ +G+ G + SS P V +G +KV
Sbjct: 365 QVLFVACGSWHSALITSTGRLYTFGDGTF---GALGHGNRESSAYPKEVEALNGFRTIKV 421
Query: 63 ACGSEHVVALVSAGETYKGEDLVC---YSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
ACG H A+V A G ++V Y+WG + +LG GD+E+RL P ++ + +
Sbjct: 422 ACGVWHSAAIVEA-TVQTGMNMVSKKLYTWGDGDKNRLGQGDKEARLIPTCVQALLEHN- 479
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+++ CG T L +T G +NGQLG+ + P VK+
Sbjct: 480 --FHQLACGQNMTVALA--------TSGHVYTMGSSDNGQLGNPKSDGKQ-PCLVKDKLA 528
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ + + CG H +V++S +V++WGM N L + D +P ++
Sbjct: 529 HELVEEISCGAAHVAVLTSRSEVYTWGMG------ANGRLGHGDLNDKKAPTIVE----- 577
Query: 240 GPKFQDPVQVACGAAHTVLV 259
K + ++CG+ T +
Sbjct: 578 ALKDRHVKSISCGSNFTTCI 597
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 123/288 (42%), Gaps = 41/288 (14%)
Query: 17 IDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVAL 72
I++ G +++WG + D T S V P P+ V ++ CGS H+
Sbjct: 213 IESLGDVYVWGEVWTDAAPSDGHTTSSCSKVDVLIPKPLESDVVLDVNQIVCGSRHIALT 272
Query: 73 VSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHT 132
GE + +WG G+LG G RPK++E+ S V ++CG FHT
Sbjct: 273 TRQGEVF--------TWGEELGGRLGHGTDTDISRPKLVESI---SVTIVDFISCGEFHT 321
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFH 192
++ D+ W G G LG+ T S +P++V + + ++ V CG +H
Sbjct: 322 CAIS---ASGDLFN---WGDGSYHAGLLGYDTGASHWLPKRVSGPLEGLQVLFVACGSWH 375
Query: 193 TSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACG 252
+++++S G ++++G + G + N A + + NG F+ ++VACG
Sbjct: 376 SALITSTGRLYTFG-DGTFGALGHG----NRESSAYPKEVEALNG-----FR-TIKVACG 424
Query: 253 AAHTVLVTDD---------GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
H+ + + KL++WG G LG G P V
Sbjct: 425 VWHSAAIVEATVQTGMNMVSKKLYTWGDGDKNRLGQGDKEARLIPTCV 472
>gi|338723782|ref|XP_001915115.2| PREDICTED: LOW QUALITY PROTEIN: e3 ISG15--protein ligase HERC5
[Equus caballus]
Length = 966
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 102/213 (47%), Gaps = 31/213 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG----GFSLVSSFTPSPVWDFHGHT 58
I + G SLA+ G L+ WG +T G G + S+ TP V G
Sbjct: 83 NIIQITCGDYHSLALSKGGELFAWG------QNTYGQLGVGRTFASTPTPQIVEHLSGVP 136
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+V+++ G H +AL + YSWG N+ GQLGLG ++ P +IE +
Sbjct: 137 LVQISAGEAHSMALSMSRNV--------YSWGRNDCGQLGLGHTNNKDSPSLIEALDNQE 188
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG HTALLT + + +TFG G+ GQLGH +TQ+ L P V EL
Sbjct: 189 ---VEFLACGGSHTALLTK--------DGLVFTFGAGKCGQLGHNSTQNELTPCLVTELV 237
Query: 179 QYVYLVSVDCGLFHT-SVVSSAGDVWSWGMEKG 210
+ + CG HT + VS G V+S+G +G
Sbjct: 238 GK-RVTQIACGRRHTLAYVSDLGKVFSFGSGEG 269
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 35/246 (14%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQ 116
++++ CG H +AL GE + +WG N GQLG+G S P+I+E
Sbjct: 83 NIIQITCGDYHSLALSKGGELF--------AWGQNTYGQLGVGRTFASTPTPQIVEHL-- 132
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S + +++ G H+ L+ + +++G + GQLG G T + P ++
Sbjct: 133 -SGVPLVQISAGEAHSMALSMSRN--------VYSWGRNDCGQLGLGHTNNKDSPSLIEA 183
Query: 177 LP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q V ++ CG HT++++ G V+++G G C L N + ++P L++
Sbjct: 184 LDNQEVEFLA--CGGSHTALLTKDGLVFTFGA----GKC--GQLGHNSTQNELTPCLVTE 235
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
+ Q+ACG HT+ D K++S+G G G LG G T P + + P
Sbjct: 236 LVG-----KRVTQIACGRRHTLAYVSDLGKVFSFGSGEGGQLGNGATHHQLIP-LPMKLP 289
Query: 296 LTEEFK 301
EE K
Sbjct: 290 SNEELK 295
>gi|444516740|gb|ELV11273.1| E3 ubiquitin-protein ligase HERC2 [Tupaia chinensis]
Length = 3151
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 1356 AVHSGGRHATALTVDGKVFSWGEG---DDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 1412
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 1413 SSHSAALTSSGELY--------TWGLGEYGRLGHGDTTTQLKPKMVKVLLGHR---VVQV 1461
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 1462 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 1514
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 1515 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 1564
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 1565 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 1608
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 125/288 (43%), Gaps = 37/288 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G S P + G VV VA G
Sbjct: 2351 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGSRSPCDRPRVIESLRGIEVVDVAAG 2407
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V +
Sbjct: 2408 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVGI 2456
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 2457 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 2507
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
V V+CG + ++ AG V++WG KG + G + G +
Sbjct: 2508 VRVECGSQFSVALTKAGAVYTWG--KG---------DYHRLGHGSDDHVRRPRQVQGLQG 2556
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 2557 KKAIAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 2603
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 131/296 (44%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSP--VWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G G L S P P V + V KVA
Sbjct: 1303 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGLSSGTVPLPRQVTALSSYVVKKVA 1356
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 1357 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 1405
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG T + L P+ VK L +
Sbjct: 1406 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDTTTQLKPKMVKVLLGH- 1456
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWG----MEKGLGLCPNASLTRNEAGDAISPILISG 235
+V V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 1457 RVVQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 1507
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 1508 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 1556
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH VV+V
Sbjct: 1405 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDTTTQLKPKMVKVLLGHRVVQV 1461
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 1462 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 1512
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 1513 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 1563
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 1564 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 1612
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 1613 GQKITRVACGSSHSV 1627
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 109/260 (41%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 2400 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 2453
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 2454 VGIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 2504
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 2505 LGVVRVECGSQFSVALTK--------AGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 2555
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+++ G H + G+V++WG E LG ++ R P L++
Sbjct: 2556 GKKAIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 2606
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 2607 -QGKKVN---RVACGSAHTL 2622
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 120/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 2253 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALAALRPVQLIGGEQTLFAVT 2309
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 2310 ADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 2360
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG+ P ++ L + + +V V G H+
Sbjct: 2361 ALSS--------EGEVYSWGEAEDGKLGHGSRSPCDRPRVIESL-RGIEVVDVAAGGAHS 2411
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 2412 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVGIACGS 2460
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 2461 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 2488
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 90/209 (43%), Gaps = 30/209 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P E P + G T +
Sbjct: 2263 YGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPVQLI----GGEQTLFAV-------TAD 2311
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T+S P ++ + Q+V++ V+V+ G H +SS G+V+S
Sbjct: 2312 GKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCLALSSEGEVYS 2370
Query: 205 WG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG E G LG + R +++ I + V VA G AH+ VT
Sbjct: 2371 WGEAEDGKLGHGSRSPCDRPRVIESLRGIEV-------------VDVAAGGAHSACVTAA 2417
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G L++WG+GR G LG + D P +V
Sbjct: 2418 G-DLYTWGKGRYGRLGHSDSEDQLKPKLV 2445
>gi|348676412|gb|EGZ16230.1| hypothetical protein PHYSODRAFT_445559 [Phytophthora sojae]
Length = 2434
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 138/306 (45%), Gaps = 42/306 (13%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
S P V V V+C H V ++ E G+ + Y++G N+ GQLG D
Sbjct: 559 SESVPKIVRSLENRIVRLVSCSYYHTV--MACEEDGSGQQYL-YTFGRNDYGQLGHNDSI 615
Query: 104 SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
R P+ +E V V CG +HT ++T + + FG + GQLG
Sbjct: 616 DRKVPQHVEAMGDQH---VVSVACGQYHTMVVTATGK--------AFAFGKNDYGQLGID 664
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASL 219
+ ++ LVP QV+ + + + CG +HT V+ S ++++G + GLG NAS
Sbjct: 665 SMENQLVPVQVRAGLEKHECLEIRCGYYHTIVLCSGAHLFAFGRNDYGQLGLGRA-NASS 723
Query: 220 TRN----EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSG 275
T N + + + ++ G +D V+ ACG HTV V+D+G ++ +GR G
Sbjct: 724 TANLQLQQQRFSYARLIEELEG------KDIVRFACGCYHTVAVSDNGV-MYVFGRNNHG 776
Query: 276 VLGTGKTI---------DFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLEGAEERD 326
LGTG T DF + L + F + TGG +DE +D G ++ +
Sbjct: 777 QLGTGDTNERVYPFPIDDFVGKRVAL---VAAGFYHTVVLTGGKEDEKNDQDAAGNDKGE 833
Query: 327 EKLSSA 332
S+A
Sbjct: 834 GSQSTA 839
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 102/237 (43%), Gaps = 33/237 (13%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG--DRESRL--RPKIIETF 114
++++ G+EH +AL T G+ L C G N+NGQ G G R S L PK+
Sbjct: 468 IIQIGAGNEHTIAL-----TVDGKVLTC---GYNDNGQCGQGGTARVSHLCEMPKM---- 515
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
D+ + G HT L+T ++ T G GQLGHG T S VP+ V
Sbjct: 516 -GDNAISQVHAYNGCEHTILVT--------MDGRAATCGYNYRGQLGHGNTASESVPKIV 566
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS 234
+ L + + V C +HT V++ D G L N++ D P +
Sbjct: 567 RSLENRIVRL-VSCSYYHT-VMACEEDGSGQQYLYTFGRNDYGQLGHNDSIDRKVPQHVE 624
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G Q V VACG HT++VT G K +++G+ G LG + P V
Sbjct: 625 AMGD-----QHVVSVACGQYHTMVVTATG-KAFAFGKNDYGQLGIDSMENQLVPVQV 675
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 59/146 (40%), Gaps = 19/146 (13%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
W+ G G+LGHG T S E+++ L Q ++ + G HT ++ G V + G
Sbjct: 436 WSCGQNSYGELGHGDTASRKSFERIESLQQK-EIIQIGAGNEHTIALTVDGKVLTCGYND 494
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD----PVQVACGAAHTVLVTDDGYK 265
G C R +S + PK D V G HT+LVT DG +
Sbjct: 495 N-GQCGQGGTAR------VSHLC------EMPKMGDNAISQVHAYNGCEHTILVTMDG-R 540
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ G G LG G T P IV
Sbjct: 541 AATCGYNYRGQLGHGNTASESVPKIV 566
>gi|443688897|gb|ELT91442.1| hypothetical protein CAPTEDRAFT_169244 [Capitella teleta]
Length = 1060
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 132/295 (44%), Gaps = 40/295 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ +G S + +AG ++ WG+ + G S+ P V H VV+VA
Sbjct: 96 VLQASSGTKHSTVLTDAGQVFTWGSNE-DNQLGRGQVDSASTSIPRMVRGLADHKVVQVA 154
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CGS H V L + G+ Y +WG+NN+GQLGL ++ + P+ + S +
Sbjct: 155 CGSAHTVGLTATGQIY--------TWGSNNHGQLGLANKTPQNEPQWVSCI---SGLPIV 203
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
V G+ H +LT + + +G GQLG G Q P VK L + +
Sbjct: 204 RVAAGADHNLVLT--------ISGALFAWGCNSFGQLGVGDDQDRGAPTLVKTL-RNQGI 254
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
++ CG H+ ++ G V+++G G+ L N + + + P + F
Sbjct: 255 CALACGDDHSLALTRDGGVFTFG--AGM----YGQLGHNTSNNELLPRKV---------F 299
Query: 244 Q----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
+ Q+ACG H++ +++ +G G +G LGTG T++ +PA+V P
Sbjct: 300 ELMGSSVTQIACGRKHSIAYVPSSGRVYVFGLGGNGQLGTGSTVNRMSPAMVKGP 354
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 113/258 (43%), Gaps = 40/258 (15%)
Query: 38 GGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQL 97
GG + P + F VV +ACG +H + + G S G N+ GQ
Sbjct: 25 GGLEEETVTLPREIRSFCNVEVVHIACGLQHTLFVKKDGRV--------LSCGNNDYGQ- 75
Query: 98 GLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN 157
LG + RP +I++ + + V + + G+ H+ +LT + +T+G E+
Sbjct: 76 -LGHEKPCKRPALIDSLGERN---VLQASSGTKHSTVLTDAGQ--------VFTWGSNED 123
Query: 158 GQLGHGTTQSA--LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGL 213
QLG G SA +P V+ L + +V V CG HT +++ G +++WG LGL
Sbjct: 124 NQLGRGQVDSASTSIPRMVRGLADH-KVVQVACGSAHTVGLTATGQIYTWGSNNHGQLGL 182
Query: 214 CPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGR 273
+ IS + I V+VA GA H +++T G L++WG
Sbjct: 183 ANKTPQNEPQWVSCISGLPI-------------VRVAAGADHNLVLTISG-ALFAWGCNS 228
Query: 274 SGVLGTGKTIDFFAPAIV 291
G LG G D AP +V
Sbjct: 229 FGQLGVGDDQDRGAPTLV 246
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 89/194 (45%), Gaps = 30/194 (15%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG+ +GQLGLG + E+ P+ I +F V + CG HT + R
Sbjct: 14 WGSLTHGQLGLGGLEEETVTLPREIRSFCN---VEVVHIACGLQHTLFVKKDGR------ 64
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ G + GQLGH + P + L + L G H++V++ AG V++WG
Sbjct: 65 --VLSCGNNDYGQLGH--EKPCKRPALIDSLGERNVL-QASSGTKHSTVLTDAGQVFTWG 119
Query: 207 MEKGLGLCPNASLTRNEAGDAIS--PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
+ + L R + A + P ++ G H VQVACG+AHTV +T G
Sbjct: 120 SNE------DNQLGRGQVDSASTSIPRMVRGLADH-----KVVQVACGSAHTVGLTATG- 167
Query: 265 KLWSWGRGRSGVLG 278
++++WG G LG
Sbjct: 168 QIYTWGSNNHGQLG 181
>gi|281344276|gb|EFB19860.1| hypothetical protein PANDA_001439 [Ailuropoda melanoleuca]
Length = 993
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 97/204 (47%), Gaps = 23/204 (11%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G SLA+ G L+ WG F+ + TP V G +V+++
Sbjct: 108 IIQIACGDYHSLALSKGGELFAWGQNLHGQLGVGRLFASIP--TPQAVEHLSGVPLVQIS 165
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G H +AL +G YSWG N+ GQLGLG + P +IET + V
Sbjct: 166 AGKAHSMALSMSGNV--------YSWGRNDLGQLGLGHTDGEDFPSLIETLDNQQ---VE 214
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
+ CG HTALLT + + +TFG G+ GQLGH +TQ+ L P V EL +
Sbjct: 215 FLACGGSHTALLT--------TDGLVFTFGAGKYGQLGHNSTQNELRPRLVTELAGN-RV 265
Query: 184 VSVDCGLFHT-SVVSSAGDVWSWG 206
+ CG HT + VS G V+S+G
Sbjct: 266 TQIACGRRHTLAYVSDLGKVFSFG 289
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 118/249 (47%), Gaps = 41/249 (16%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL-RPKIIETFNQ 116
+++++ACG H +AL GE ++WG N +GQLG+G + + P+ +E
Sbjct: 107 SIIQIACGDYHSLALSKGGE--------LFAWGQNLHGQLGVGRLFASIPTPQAVEHL-- 156
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S + +++ G H+ L+ + +++G + GQLG G T P ++
Sbjct: 157 -SGVPLVQISAGKAHSMALS--------MSGNVYSWGRNDLGQLGLGHTDGEDFPSLIET 207
Query: 177 LP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS- 234
L Q V ++ CG HT+++++ G V+++G K L N + + P L++
Sbjct: 208 LDNQQVEFLA--CGGSHTALLTTDGLVFTFGAGK------YGQLGHNSTQNELRPRLVTE 259
Query: 235 --GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
GN Q+ACG HT+ D K++S+G G+ G LG G T + P + +
Sbjct: 260 LAGN--------RVTQIACGRRHTLAYVSDLGKVFSFGSGKEGQLGNGGTHNQLIP-LPM 310
Query: 293 WPPLTEEFK 301
P EE K
Sbjct: 311 KLPSNEELK 319
>gi|194767960|ref|XP_001966082.1| GF19414 [Drosophila ananassae]
gi|190622967|gb|EDV38491.1| GF19414 [Drosophila ananassae]
Length = 5087
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 131/290 (45%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ G ++ WG + G + VS P V HG +V +ACG
Sbjct: 4315 AVNSGGKHCLALTTEGEVYAWGEG---EDGKLGHGNRVSYDRPKLVEHLHGMSVADIACG 4371
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ ++G+ +WG G+LG GD E +LRPK++E + ++
Sbjct: 4372 SAHSAAITASGQVL--------TWGKGRYGRLGHGDSEDQLRPKLVEALLG---YRAIDI 4420
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + +P +++ L + ++
Sbjct: 4421 ACGSGDAQTLCITDDDN------VWSWGDGDYGKLGRGGSDGCKLPYKIESL-AGLGVIK 4473
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + R + A+ G
Sbjct: 4474 VECGSQFSVALTKSGAVYTWG--KGDFHRLGHGSVDHVRRPKKVAAL----------QGK 4521
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V +D G ++++WG G LG G P +V
Sbjct: 4522 KI---ISIATGSLHCVACSDSG-EVYTWGDNDEGQLGDGTVTAIQRPRLV 4567
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 131/289 (45%), Gaps = 37/289 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + + P V + VACG
Sbjct: 3165 AVHSGGKHALALTLDGKVFSWGEG---EDGKLGHGNRTTLDKPRQVEALRAKKIRDVACG 3221
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S GE Y +WG G+LG GD ++L+PK++ V +V
Sbjct: 3222 SSHSAAISSQGELY--------TWGLGEYGRLGHGDNATQLKPKLVAALAGRR---VVQV 3270
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L + + +++G G+ G+LG G ++ + P +++ L + ++
Sbjct: 3271 ACGSRDAQTLALTE------DGAVFSWGDGDFGKLGRGGSEGSDTPHEIERL-SGIGVIQ 3323
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD--AISPILISGNGPHGPKF 243
++CG + ++ AG+VW+WG L GD P I G +
Sbjct: 3324 IECGAQFSLALTRAGEVWTWGKGDYYRL--------GHGGDQHVRKPQPIGGL-----RG 3370
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ + VA GA H + VTD G ++++WG G G+G T PA+V+
Sbjct: 3371 RRVIHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGSGNTFVNKKPALVI 3418
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 89/204 (43%), Gaps = 21/204 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G S AI + G L+ WG L + G + P V G VV+V
Sbjct: 3214 KIRDVACGSSHSAAISSQGELYTWG---LGEYGRLGHGDNATQLKPKLVAALAGRRVVQV 3270
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L ED +SWG + G+LG G E P IE S V
Sbjct: 3271 ACGSRDAQTLALT------EDGAVFSWGDGDFGKLGRGGSEGSDTPHEIERL---SGIGV 3321
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT R ++ WT+G G+ +LGHG Q P+ + L +
Sbjct: 3322 IQIECGAQFSLALT---RAGEV-----WTWGKGDYYRLGHGGDQHVRKPQPIGGL-RGRR 3372
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG 206
++ V G H V+ +G V++WG
Sbjct: 3373 VIHVAVGALHCLAVTDSGQVYAWG 3396
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 67/150 (44%), Gaps = 21/150 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G S+A+ +GA++ WG D G S+ P V G ++ +A
Sbjct: 4471 VIKVECGSQFSVALTKSGAVYTWGKG---DFHRLGHGSVDHVRRPKKVAALQGKKIISIA 4527
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H VA +GE Y +WG N+ GQLG G + RP+++ +
Sbjct: 4528 TGSLHCVACSDSGEVY--------TWGDNDEGQLGDGTVTAIQRPRLVSALQGKH---IV 4576
Query: 124 EVTCGSFHTALLTH-------RKRPNDMLE 146
+VTCGS HT L+ R PN LE
Sbjct: 4577 KVTCGSAHTLALSTSQLSERLRPLPNPPLE 4606
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 100/216 (46%), Gaps = 32/216 (14%)
Query: 82 EDLVC--YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
+DL C WG N+ QLG G + S+++ P +T ++ P + GS +++
Sbjct: 3070 QDLPCTVMVWGLNDKEQLG-GLKGSKVKVPTFSQTISRLRP---IHIAGGSKSLFIVSQE 3125
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVDCGLFHTSVVS 197
R + G G NG+LG G T + +P Q+ L QYV V+V G H ++
Sbjct: 3126 GR--------VFACGEGTNGRLGLGVTYNVPLPHQLPVLHQYVVKKVAVHSGGKHALALT 3177
Query: 198 SAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
G V+SWG E G LG +L + +A+ K +D VACG++H
Sbjct: 3178 LDGKVFSWGEGEDGKLGHGNRTTLDKPRQVEAL----------RAKKIRD---VACGSSH 3224
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ ++ G +L++WG G G LG G P +V
Sbjct: 3225 SAAISSQG-ELYTWGLGEYGRLGHGDNATQLKPKLV 3259
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 36/228 (15%)
Query: 48 PSPVWDFHGHTVVKVA--CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P P+ + T + +A C H +A+ S Y SWGA + +LG GD +R
Sbjct: 620 PQPLEEAGHETFISIAGHCEGRHFMAIDSNHNAY--------SWGAGEDHRLGHGDTHAR 671
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
P I Q V V CG ++A++T T+G G +LGHG +
Sbjct: 672 AVPTKIAALEQH---CVQSVFCGCTYSAVIT--------CGGNLLTWGRGTYARLGHGNS 720
Query: 166 QSALVPEQVKELPQYVYL-VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA 224
+P V L ++ + V++ G H+ ++S G V++WG + G L
Sbjct: 721 DDRCLPTLVAALAEHTVVDVALGSGDAHSLALTSEGLVFAWG-DGDYG-----KLGNGNC 774
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG 272
++ PIL+ P+ Q ++ G+ ++V ++ +G ++++WG+
Sbjct: 775 NGSLQPILVESL----PRVQ---RIFAGSQYSVALSSEG-QVYTWGKA 814
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 11/142 (7%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G GE+ +LGHG T + VP ++ L Q+ + SV CG +++V++ G++ +WG
Sbjct: 653 YSWGAGEDHRLGHGDTHARAVPTKIAALEQHC-VQSVFCGCTYSAVITCGGNLLTWGRGT 711
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
A L + D P L++ H D V + G AH++ +T +G +++W
Sbjct: 712 ------YARLGHGNSDDRCLPTLVAALAEH--TVVD-VALGSGDAHSLALTSEGL-VFAW 761
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G G LG G P +V
Sbjct: 762 GDGDYGKLGNGNCNGSLQPILV 783
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 98/225 (43%), Gaps = 35/225 (15%)
Query: 1 MSQIC--SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
+ Q C SV G S I G L WG + G + P+ V HT
Sbjct: 680 LEQHCVQSVFCGCTYSAVITCGGNLLTWGRG---TYARLGHGNSDDRCLPTLVAALAEHT 736
Query: 59 VVKVACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
VV VA GS H +AL S G + ++WG + G+LG G+ L+P ++E+ +
Sbjct: 737 VVDVALGSGDAHSLALTSEG--------LVFAWGDGDYGKLGNGNCNGSLQPILVESLPR 788
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFG----LGENGQLGHGTTQSALVPE 172
V + GS ++ L+ E +T+G LG QL + Q VP
Sbjct: 789 -----VQRIFAGSQYSVALSS--------EGQVYTWGKATCLGH--QLVERSVQGCSVPR 833
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNA 217
V L Q+ +V + G+ H +SS+G+V+ WG +CP++
Sbjct: 834 LVSSL-QHKRIVDMAVGVAHCLALSSSGEVFGWGRNDCQQVCPSS 877
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 77/191 (40%), Gaps = 23/191 (12%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +L I + +W WG+ D G P + G V+KV CGS+
Sbjct: 4424 SGDAQTLCITDDDNVWSWGDG---DYGKLGRGGSDGCKLPYKIESLAGLGVIKVECGSQF 4480
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL +G Y+WG + +LG G + RPK + + + G
Sbjct: 4481 SVALTKSG--------AVYTWGKGDFHRLGHGSVDHVRRPKKVAALQGKK---IISIATG 4529
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
S H + +T+G + GQLG GT + P V L Q ++V V C
Sbjct: 4530 SLHCVACSD--------SGEVYTWGDNDEGQLGDGTVTAIQRPRLVSAL-QGKHIVKVTC 4580
Query: 189 GLFHTSVVSSA 199
G HT +S++
Sbjct: 4581 GSAHTLALSTS 4591
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ ++ G SLA+ AG +W WG D G P P+ G V+ VA
Sbjct: 3321 VIQIECGAQFSLALTRAGEVWTWGKG---DYYRLGHGGDQHVRKPQPIGGLRGRRVIHVA 3377
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ +G+ Y+WG N++GQ G G+ +P ++ + V
Sbjct: 3378 VGALHCLAVTDSGQV--------YAWGDNDHGQQGSGNTFVNKKPALVIGLDD---VFVN 3426
Query: 124 EVTCGSFHT 132
V CGS H+
Sbjct: 3427 RVACGSSHS 3435
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 32/210 (15%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y WG N+ GQLG G SR++ P E + P ++ G +T P+ L
Sbjct: 4227 YGWGHNHRGQLG-GLEGSRIKTPTPCEALSLLRP---VQLAGGEQSLFAVT----PDGKL 4278
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVW 203
+ G G G+LG G + S +P + L Q+V++ V+V+ G H +++ G+V+
Sbjct: 4279 ----FATGYGSGGRLGVGGSDSWAIPTLLGSL-QHVFVKKVAVNSGGKHCLALTTEGEVY 4333
Query: 204 SWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+WG E G LG S R + + + HG D +ACG+AH+ +T
Sbjct: 4334 AWGEGEDGKLGHGNRVSYDRPKLVEHL----------HGMSVAD---IACGSAHSAAITA 4380
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G ++ +WG+GR G LG G + D P +V
Sbjct: 4381 SG-QVLTWGKGRYGRLGHGDSEDQLRPKLV 4409
>gi|325180681|emb|CCA15086.1| RCC1 and BTB domaincontaining protein putative [Albugo laibachii
Nc14]
Length = 554
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 115/277 (41%), Gaps = 35/277 (12%)
Query: 16 AIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSA 75
AI +GAL+ +G G S TP+ + D + VV+VAC H + +
Sbjct: 112 AISRSGALYTFG---FNSRGQLGHGSTNPITTPTKIKDLASYHVVEVACSYFHTIVMTME 168
Query: 76 GETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL 135
G Y ++G N+ GQLG+ D R P + FN V V CG HT +
Sbjct: 169 GTLY--------AFGRNDLGQLGIDDGMDRHVPVPLTYFNS---RPVLAVACGQHHTVV- 216
Query: 136 THRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV-SVDCGLFHTS 194
+ FG ++GQLG G T + P +V S+ CG +HT
Sbjct: 217 -------SLTNGGVVAFGKNDHGQLGTGYTLDYHASPSLLAAPLDSLVVPSLACGYYHTI 269
Query: 195 VVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAA 254
++ G V+S+G L P LI VQV CG
Sbjct: 270 ALAEHGSVYSFGRND------YGQLGHGHRHHLSEPTLIKALAK-----THAVQVTCGCY 318
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+++++DG K++ +GR G LG G ID +P I+
Sbjct: 319 HTLVLSEDG-KVYPFGRNNHGQLGLGNLIDCTSPQII 354
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 116/254 (45%), Gaps = 40/254 (15%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD----RE 103
P+P+ H ++ VACG+E L G+ + + G N++GQ G+G +
Sbjct: 35 PTPISFCHNVKILDVACGNEQTAFLFETGDVF--------TCGYNDSGQCGIGSTSRVQS 86
Query: 104 SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
RL P ++ A G H LT R + +TFG GQLGHG
Sbjct: 87 LRLVPALVT-----EDIAHIRSANGCEH---LTAISRSGAL-----YTFGFNSRGQLGHG 133
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE 223
+T P ++K+L Y ++V V C FHT V++ G ++++G LG L ++
Sbjct: 134 STNPITTPTKIKDLASY-HVVEVACSYFHTIVMTMEGTLYAFG-RNDLG-----QLGIDD 186
Query: 224 AGDAISPILISGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
D P+ P PV VACG HTV+ +G + ++G+ G LGTG T
Sbjct: 187 GMDRHVPV------PLTYFNSRPVLAVACGQHHTVVSLTNG-GVVAFGKNDHGQLGTGYT 239
Query: 283 IDFFAPAIVLWPPL 296
+D+ A +L PL
Sbjct: 240 LDYHASPSLLAAPL 253
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 20/157 (12%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V +ACG H +AL G Y S+G N+ GQLG G R P +I+ +
Sbjct: 257 VVPSLACGYYHTIALAEHGSVY--------SFGRNDYGQLGHGHRHHLSEPTLIKALAKT 308
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+VTCG +HT +L+ + + FG +GQLG G P+ + L
Sbjct: 309 HAV---QVTCGCYHTLVLSEDGK--------VYPFGRNNHGQLGLGNLIDCTSPQIIASL 357
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLC 214
++V V G +H+ +++ + M+ LC
Sbjct: 358 RDK-FVVKVASGFYHSICLTATKNSVGSRMDTSHTLC 393
>gi|355715932|gb|AES05447.1| regulator of chromosome condensation and BTB domain containing
protein 2 [Mustela putorius furo]
Length = 344
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 120/250 (48%), Gaps = 31/250 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + +G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 14 STIEPRRLESLNGKKIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTT 65
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT + + +G +GQ+G
Sbjct: 66 NHGLVPCHIST--NLSNKQVTEVACGSYHSLVLTS--------DGEVFAWGYNNSGQVGS 115
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + L+P +V Q +V++ CG + V + G+V+ WG N L
Sbjct: 116 GSTANQLIPRRVTGCLQNKVVVNIACGQMCSMAVVNTGEVYVWGYNG------NGQLGLG 169
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+G+ +P I+ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 170 SSGNQPTPCRIA--ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNK 223
Query: 283 IDFFAPAIVL 292
+ PA V+
Sbjct: 224 SNQSYPAPVV 233
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 111/253 (43%), Gaps = 45/253 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +VACGS H + L S GE + +WG NN+GQ+G G ++L P+ + Q+
Sbjct: 83 VTEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQLIPRRVTGCLQNK 134
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + + + +G NGQLG G++ + P ++ L
Sbjct: 135 --VVVNIACGQMCSMAVVNTGE--------VYVWGYNGNGQLGLGSSGNQPTPCRIAAL- 183
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAI-SPILISG 235
Q + + V CG HT V++ G V++WG LG T N++ + +P+++
Sbjct: 184 QGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLG-------TGNKSNQSYPAPVVVE- 235
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFF 286
K + AC +AHT G ++ WG RG+S L T F
Sbjct: 236 ------KDRIIEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVTLPHLTHFSCTDDVFACF 289
Query: 287 APAIVLWPPLTEE 299
A V W L+ E
Sbjct: 290 ATPAVSWRLLSVE 302
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M S+A+ N G +++WG + G L SS TP + G V
Sbjct: 136 VVNIACGQMCSMAVVNTGEVYVWG------YNGNGQLGLGSSGNQPTPCRIAALQGIRVQ 189
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 190 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYP 229
>gi|356569687|ref|XP_003553028.1| PREDICTED: uncharacterized protein LOC100797223 [Glycine max]
Length = 1043
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 141/309 (45%), Gaps = 42/309 (13%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGN-CPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTVVKVA 63
+V G + A+ ++G ++ WGN D EG S + P + G ++ VA
Sbjct: 360 NVACGEYHTCALTDSGEVYTWGNDVCCADLLIEG--RTRSQWIPQKLGGSLDGISISSVA 417
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H + S G + ++G G LG GD S PK +E+ S V
Sbjct: 418 CGEWHTAIVSSCGRLF--------TYGDGTFGVLGHGDLRSYSSPKEVESL---SGLRVR 466
Query: 124 EVTCGSFHTALLTH----RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
CGS+HTA + R R N + +T+G G+ G+LGH S LVP +V +L
Sbjct: 467 SAACGSWHTAAIVEVMFDRFRYNSASGKL-FTWGDGDEGRLGHVDNGSKLVPTRVTQLVD 525
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEK-GLGLCPNASLTRNEAGDAISPILISGNGP 238
Y + V V CG T +++ G V++ G K G P+A R++A +++ G
Sbjct: 526 YDF-VQVSCGRMLTVALTNMGKVFAMGSAKYGQLGNPHA---RDKA------VMVEGQLK 575
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTE 298
Q+ V+V ++ V V G +++WGRG +G LG G T D + P V E
Sbjct: 576 -----QEFVKVISTGSYHVAVLTSGGSVYTWGRGENGQLGLGDTEDRYTPCFV------E 624
Query: 299 EFKQDELNT 307
+ ++NT
Sbjct: 625 ALRDRQVNT 633
>gi|340375548|ref|XP_003386296.1| PREDICTED: e3 ubiquitin-protein ligase HERC2 [Amphimedon
queenslandica]
Length = 4694
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 108/226 (47%), Gaps = 33/226 (14%)
Query: 68 HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC 127
H++AL G+ Y SWG +NG LG+G+ ES+ P + + D + ++
Sbjct: 519 HILALTKDGKVY--------SWGQGSNGVLGIGNTESQTAPTAVAALSGDR---IVHISA 567
Query: 128 GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVD 187
GS H+A +T + + +T+G G G+LGHG + L+P V+ L V +V VD
Sbjct: 568 GSMHSAAVTE--------DGVLYTWGKGSYGRLGHGNAEDKLIPTIVEGL-NGVKIVQVD 618
Query: 188 CGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
CG HT + G VWSWG + G L R + P ISG G P
Sbjct: 619 CGSGDAHTLALDDTGQVWSWG-DGDYG-----KLGRPGSDQNKVPKPISGIGSTSPV--- 669
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V++ CG ++ +T DG KL+SWG G + LG G P ++
Sbjct: 670 -VKIICGNQISMALTKDG-KLYSWGCGDTYQLGHGNQEHVRQPKLI 713
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 122/260 (46%), Gaps = 43/260 (16%)
Query: 38 GGFSLVSSFTPSPVWDFHGHTVVKVA--CGSEHVVALVSAGETYKGEDLVCYSWGANNNG 95
GGF+ + P + + V KVA C HV+A+ + G+ + SWG G
Sbjct: 2993 GGFANIR--MPHQISSLSMYVVRKVAVSCAGRHVLAVTADGKVF--------SWGDGQYG 3042
Query: 96 QLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG 155
QLG G +S RPK+IE F + EV+CG+ H+A ++ + +T+G G
Sbjct: 3043 QLGHGSLQSYDRPKMIEIFQAKH---IREVSCGTGHSAAVS--------VNGELFTWGQG 3091
Query: 156 ENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD--VWSWGMEK--GL 211
+G+LGHG + + P+ V+ L + V + V CG + + +AGD +W+WG L
Sbjct: 3092 ADGRLGHGDSNNQTKPKLVRAL-EKVRISCVACGSRNAHTL-AAGDNSLWAWGDGSFGKL 3149
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
GL +S T P I +Q+ CG +VL+T +G K+++WG+
Sbjct: 3150 GLKDGSSSTDVPVQVITFPSNI-------------IQIECGMHFSVLLTKEG-KVYTWGK 3195
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G LG T P +V
Sbjct: 3196 GEYYRLGNDSTSVQPIPTLV 3215
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 115/259 (44%), Gaps = 38/259 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + AG M S A+ G L+ WG G + P+ V +G +V+V
Sbjct: 561 RIVHISAGSMHSAAVTEDGVLYTWGKGSY---GRLGHGNAEDKLIPTIVEGLNGVKIVQV 617
Query: 63 ACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
CGS H +AL G+ +SWG + G+LG + PK I SP
Sbjct: 618 DCGSGDAHTLALDDTGQV--------WSWGDGDYGKLGRPGSDQNKVPKPISGIGSTSP- 668
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++ CG+ + LT + +++G G+ QLGHG + P+ ++ L +
Sbjct: 669 -VVKIICGNQISMALTK--------DGKLYSWGCGDTYQLGHGNQEHVRQPKLIEGLSET 719
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI-SPILISGNGPH 239
V + V G H +++ DV++WG N+S NE+GD I SP++I
Sbjct: 720 V-VSDVSVGAQHCVALTTDSDVYAWG--------KNSSFEVNESGDIISSPLMIEAASGK 770
Query: 240 GPKFQDPVQVACGAAHTVL 258
G + +ACGA+ T +
Sbjct: 771 G-----ALLIACGASETFV 784
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 123/284 (43%), Gaps = 34/284 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
++ +GG LA+ G L+ WG + G + V+ P + V+ CG
Sbjct: 3927 AIHSGGKHCLAVTTQGELYAWGE---GEDGKLGLGTTVNMNVPHLIESLKSKHVIDAGCG 3983
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H + G Y+WG G+LG D E++ +PK++ + V V
Sbjct: 3984 SSHSACITDDGS--------LYTWGKGRYGRLGHNDHETQHKPKLVSALKGEQ---VTCV 4032
Query: 126 TCGSFHTALLTHRKRPNDMLESMC-WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
CGS L S C +++G G+ G+LG G + + VP+++ L +++
Sbjct: 4033 ACGSGDAQTLC-------ATASGCVFSWGDGDYGKLGRGGNEGSKVPKKIDSLTGK-HVI 4084
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
+ CG + +++AG V++WG KG L + +P + G H +
Sbjct: 4085 KLLCGSQFSMALTTAGHVYTWG--KG----DYYRLGHGDDSHQRTPRRVLGLLAH----E 4134
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ + + CG+ H ++ T+ G K++SWG G +G T P
Sbjct: 4135 NVIDIGCGSLHCIVCTESG-KVFSWGDNDEGQIGNDTTQAVSVP 4177
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 87/426 (20%), Positives = 154/426 (36%), Gaps = 121/426 (28%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V G LA+ G ++ WG+ G SL S P + F + +V+CG
Sbjct: 3016 AVSCAGRHVLAVTADGKVFSWGDGQY---GQLGHGSLQSYDRPKMIEIFQAKHIREVSCG 3072
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ--------- 116
+ H A+ GE ++WG +G+LG GD ++ +PK++ +
Sbjct: 3073 TGHSAAVSVNGE--------LFTWGQGADGRLGHGDSNNQTKPKLVRALEKVRISCVACG 3124
Query: 117 -----------DSPWA------------------------------VYEVTCGSFHTALL 135
+S WA + ++ CG + LL
Sbjct: 3125 SRNAHTLAAGDNSLWAWGDGSFGKLGLKDGSSSTDVPVQVITFPSNIIQIECGMHFSVLL 3184
Query: 136 THRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
T E +T+G GE +LG+ +T +P V L + V G H
Sbjct: 3185 TK--------EGKVYTWGKGEYYRLGNDSTSVQPIPTLVDGLASKT-ITQVAVGALHCLA 3235
Query: 196 VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
++S+G+V+SWG + G N S N ++ + K ++ACG++H
Sbjct: 3236 LTSSGEVYSWG-DNEHGQQGNNSTICNRKPQIVASL----------KGHRICKIACGSSH 3284
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGL----- 310
++ G L T V + P++ +D L +
Sbjct: 3285 SIAFA-------------QGSLTTA----------VKFSPISFSNSKDPLGASIVHGKSS 3321
Query: 311 DDEIKTKD------------LEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIF 358
DD +TKD L+ +R E L + +++ ++ +++ + I+H S
Sbjct: 3322 DDAKETKDKERPSLTQIIISLKQHSKRQEALGHVLTALQIAYARDTIVNALSGIVHASAH 3381
Query: 359 GKPFAA 364
K A
Sbjct: 3382 EKKQGA 3387
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 34/205 (16%)
Query: 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKR 140
G + WG N+ GQLG + P++ E+ ++ +P +T G +T
Sbjct: 3831 GSTFSVFGWGHNHRGQLGGIEGNKVKSPRLCESLSELNPAM---ITGGEQTLFAVTD--- 3884
Query: 141 PNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY---VYLVSVDCGLFHTSVVS 197
+ + G +G+LG G++ + P + L V +++ G H V+
Sbjct: 3885 -----DGKVYASGYAAHGRLGIGSSDNVATPTPLTSLATRGIAVKKIAIHSGGKHCLAVT 3939
Query: 198 SAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ G++++WG + GLG N ++ P LI K + + CG+
Sbjct: 3940 TQGELYAWGEGEDGKLGLGTTVNMNV----------PHLI-----ESLKSKHVIDAGCGS 3984
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLG 278
+H+ +TDDG L++WG+GR G LG
Sbjct: 3985 SHSACITDDG-SLYTWGKGRYGRLG 4008
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 25/207 (12%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKI-IETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
+ WG N+ QLG E++++ I T + P + GS + +++
Sbjct: 2927 FVWGLNDMRQLGTDLSEAKVKSPIESRTLARLHP---IQFAGGSKCSFVVSD-------- 2975
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL-VSVDCGLFHTSVVSSAGDVWS 204
+ + G G +G+LG G + +P Q+ L YV V+V C H V++ G V+S
Sbjct: 2976 DGKVFACGEGSSGRLGIGGFANIRMPHQISSLSMYVVRKVAVSCAGRHVLAVTADGKVFS 3035
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG + G + SL + I + + +V+CG H+ V+ +G
Sbjct: 3036 WG-DGQYGQLGHGSLQSYDRPKMIEIF----------QAKHIREVSCGTGHSAAVSVNG- 3083
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+L++WG+G G LG G + + P +V
Sbjct: 3084 ELFTWGQGADGRLGHGDSNNQTKPKLV 3110
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 29/222 (13%)
Query: 66 SEHVVALVSAGETY---KGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
SE A+++ GE +D Y+ G +G+LG+G ++ P + + AV
Sbjct: 3865 SELNPAMITGGEQTLFAVTDDGKVYASGYAAHGRLGIGSSDNVATPTPLTSLATRG-IAV 3923
Query: 123 YEVTC--GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
++ G H +T + + +G GE+G+LG GTT + VP ++ L +
Sbjct: 3924 KKIAIHSGGKHCLAVT--------TQGELYAWGEGEDGKLGLGTTVNMNVPHLIESL-KS 3974
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+++ CG H++ ++ G +++WG + L N T+++ P L+S
Sbjct: 3975 KHVIDAGCGSSHSACITDDGSLYTWGKGRYGRLGHNDHETQHK------PKLVS-----A 4023
Query: 241 PKFQDPVQVACGA--AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
K + VACG+ A T+ T G ++SWG G G LG G
Sbjct: 4024 LKGEQVTCVACGSGDAQTLCATASGC-VFSWGDGDYGKLGRG 4064
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 14/131 (10%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S I ++ G S+ + G ++ WG + G S P+ V T+ +
Sbjct: 3169 SNIIQIECGMHFSVLLTKEGKVYTWGK---GEYYRLGNDSTSVQPIPTLVDGLASKTITQ 3225
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VA G+ H +AL S+GE YSWG N +GQ G +P+I+ +
Sbjct: 3226 VAVGALHCLALTSSGEV--------YSWGDNEHGQQGNNSTICNRKPQIVASLKGHR--- 3274
Query: 122 VYEVTCGSFHT 132
+ ++ CGS H+
Sbjct: 3275 ICKIACGSSHS 3285
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I V G + LA+ ++G ++ WG+ + +G S + + P V GH + K+A
Sbjct: 3223 ITQVAVGALHCLALTSSGEVYSWGD---NEHGQQGNNSTICNRKPQIVASLKGHRICKIA 3279
Query: 64 CGSEHVVALVSAGET 78
CGS H +A T
Sbjct: 3280 CGSSHSIAFAQGSLT 3294
>gi|195060098|ref|XP_001995753.1| GH17927 [Drosophila grimshawi]
gi|193896539|gb|EDV95405.1| GH17927 [Drosophila grimshawi]
Length = 4933
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 132/289 (45%), Gaps = 37/289 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + + P V + +ACG
Sbjct: 3003 AVHSGGKHALALTLDGKVFSWGE---GEDGKLGHGNRTTLDKPRLVEALRAKKIRDIACG 3059
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S GE Y +WG G+LG GD ++L+PK++ V +V
Sbjct: 3060 SSHSAAISSQGELY--------TWGLGEYGRLGHGDNATQLKPKLVTALCGSR---VIQV 3108
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L + + +++G G+ G+LG G ++ + P +++ L + +V
Sbjct: 3109 ACGSRDAQTLALTE------DGAVFSWGDGDFGKLGRGGSEGSATPHEIERL-SGIGVVQ 3161
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD--AISPILISGNGPHGPKF 243
++CG + ++ AG+VW+WG L GD P I+G +
Sbjct: 3162 IECGAQFSLALTRAGEVWTWGKGDYYRL--------GHGGDQHVRKPQPIAG-----LRG 3208
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ + VA GA H + VTD G ++++WG G G+G T PA+V+
Sbjct: 3209 RRVIHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGSGNTFVNKKPALVI 3256
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 130/290 (44%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ G ++ WG + G + +S P + +G +V +ACG
Sbjct: 4161 AVNSGGKHCLALTTDGEVYAWGE---GEDGKLGHGNRLSYDRPKLLEHLNGMSVADIACG 4217
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ ++G +WG G+LG GD E +LRPK++E + ++
Sbjct: 4218 SAHSAAITASGHVL--------TWGKGRYGRLGHGDSEDQLRPKLVEAL---LGYRAIDI 4266
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + +P +++ L + ++
Sbjct: 4267 ACGSGDAQTLCITDDDN------VWSWGDGDYGKLGRGGSDGCKLPYKIESLAG-LGVIK 4319
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + R + A+ G
Sbjct: 4320 VECGSQFSVALTKSGAVYTWG--KGDFHRLGHGSVDHVRRPKKVAAL----------QGK 4367
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V +D G ++++WG G LG G P +V
Sbjct: 4368 KI---ISIATGSLHCVACSDAG-EVYTWGDNDEGQLGDGTVTAIQRPRLV 4413
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 89/204 (43%), Gaps = 21/204 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S AI + G L+ WG L + G + P V G V++V
Sbjct: 3052 KIRDIACGSSHSAAISSQGELYTWG---LGEYGRLGHGDNATQLKPKLVTALCGSRVIQV 3108
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L ED +SWG + G+LG G E P IE S V
Sbjct: 3109 ACGSRDAQTLALT------EDGAVFSWGDGDFGKLGRGGSEGSATPHEIERL---SGIGV 3159
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT R ++ WT+G G+ +LGHG Q P+ + L +
Sbjct: 3160 VQIECGAQFSLALT---RAGEV-----WTWGKGDYYRLGHGGDQHVRKPQPIAGL-RGRR 3210
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG 206
++ V G H V+ AG V++WG
Sbjct: 3211 VIHVAVGALHCLAVTDAGQVYAWG 3234
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 115/261 (44%), Gaps = 48/261 (18%)
Query: 15 LAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA--CGSEHVVAL 72
L + G L+ W + PD+ + P D T + +A C H +A+
Sbjct: 608 LLLSKEGKLYNW-HISKPDTEPQ----------PLDFGDIGSETFISIASHCEGRHFLAV 656
Query: 73 VSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHT 132
+ YSWG +N +LG GD SR P IE+ + V V CG ++
Sbjct: 657 --------DNNFNAYSWGTGDNRRLGHGDCHSRELPTKIESLVRR----VKSVYCGCSYS 704
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY-VYLVSVDCGLF 191
A +T L +T+G G G+LGHG + +P V L + V V++ G
Sbjct: 705 AAIT--------LRGNLYTWGRGNYGRLGHGISDDQCLPTMVMALKDHQVVDVALGSGDA 756
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
HT +++ G V++WG + G NAS ++ P+LI P+ Q +V
Sbjct: 757 HTLCLTNEGLVYAWG-DGDYGKLGNAS-----CNSSLQPLLIECL----PRVQ---RVFA 803
Query: 252 GAAHTVLVTDDGYKLWSWGRG 272
G+ ++ +T +G +L+SWG+
Sbjct: 804 GSQFSLALTGEG-QLYSWGKA 823
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 32/205 (15%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC--GSFHTALLTHRK 139
+D ++ G NG+LGLG + P + +Q + V +V G H LT
Sbjct: 2962 QDGKVFACGEGTNGRLGLGVTHNVPLPHQLPVLHQ---YVVKKVAVHSGGKHALALT--- 3015
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
L+ +++G GE+G+LGHG + P V+ L + + + CG H++ +SS
Sbjct: 3016 -----LDGKVFSWGEGEDGKLGHGNRTTLDKPRLVEAL-RAKKIRDIACGSSHSAAISSQ 3069
Query: 200 GDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AH 255
G++++WG+ E G LG NA+ + P L++ G + +QVACG+ A
Sbjct: 3070 GELYTWGLGEYGRLGHGDNAT--------QLKPKLVTALC--GSRV---IQVACGSRDAQ 3116
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTG 280
T+ +T+DG ++SWG G G LG G
Sbjct: 3117 TLALTEDG-AVFSWGDGDFGKLGRG 3140
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 19/143 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G S+A+ +GA++ WG D G S+ P V G ++ +A
Sbjct: 4317 VIKVECGSQFSVALTKSGAVYTWGK---GDFHRLGHGSVDHVRRPKKVAALQGKKIISIA 4373
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H VA AGE Y+WG N+ GQLG G + RP+++ +
Sbjct: 4374 TGSLHCVACSDAGEV--------YTWGDNDEGQLGDGTVTAIQRPRLVAALQGKH---IV 4422
Query: 124 EVTCGSFH-----TALLTHRKRP 141
+VTCGS H T+ L+ R RP
Sbjct: 4423 KVTCGSAHTLALSTSQLSERLRP 4445
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 100/216 (46%), Gaps = 32/216 (14%)
Query: 82 EDLVC--YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
+D+ C WG N+ QLG G + S+++ P +T ++ P + GS +++
Sbjct: 2908 QDVPCTVMVWGLNDKEQLG-GLKGSKVKVPTFSQTISRLRP---IHIAGGSKSLFVVSQ- 2962
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVDCGLFHTSVVS 197
+ + G G NG+LG G T + +P Q+ L QYV V+V G H ++
Sbjct: 2963 -------DGKVFACGEGTNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALT 3015
Query: 198 SAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
G V+SWG E G LG +L + +A+ K +D +ACG++H
Sbjct: 3016 LDGKVFSWGEGEDGKLGHGNRTTLDKPRLVEAL----------RAKKIRD---IACGSSH 3062
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ ++ G +L++WG G G LG G P +V
Sbjct: 3063 SAAISSQG-ELYTWGLGEYGRLGHGDNATQLKPKLV 3097
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 90/217 (41%), Gaps = 25/217 (11%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ ++ SV G S AI G L+ WG + G P+ V H VV
Sbjct: 691 VRRVKSVYCGCSYSAAITLRGNLYTWGR---GNYGRLGHGISDDQCLPTMVMALKDHQVV 747
Query: 61 KVACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VA GS H + L + G + Y+WG + G+LG S L+P +IE +
Sbjct: 748 DVALGSGDAHTLCLTNEG--------LVYAWGDGDYGKLGNASCNSSLQPLLIECLPR-- 797
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V V GS + LT + ++ C LG QL Q VP + L
Sbjct: 798 ---VQRVFAGSQFSLALTGEGQLYSWGKASC----LGH--QLVERNVQGCSVPRLITSL- 847
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCP 215
Q+ +V V G+ H +SSAG+++ WG +CP
Sbjct: 848 QHKRIVDVAVGVTHCLALSSAGEIFGWGRNDNQQICP 884
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ ++ G SLA+ AG +W WG D G P P+ G V+ VA
Sbjct: 3159 VVQIECGAQFSLALTRAGEVWTWGK---GDYYRLGHGGDQHVRKPQPIAGLRGRRVIHVA 3215
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ AG+ Y+WG N++GQ G G+ +P ++ D+ + V
Sbjct: 3216 VGALHCLAVTDAGQV--------YAWGDNDHGQQGSGNTFVNKKPALV--IGLDAVF-VN 3264
Query: 124 EVTCGSFHT 132
V CGS H+
Sbjct: 3265 RVACGSSHS 3273
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 32/210 (15%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y WG N+ GQLG G SR++ P E + P ++ G +T P+ L
Sbjct: 4073 YGWGHNHRGQLG-GLEGSRIKTPTPCEALSLLRP---VQLAGGEQSLFAVT----PDGKL 4124
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVW 203
+ G G G+LG G + S +P + L Q+V++ V+V+ G H +++ G+V+
Sbjct: 4125 ----FATGYGSGGRLGVGGSDSWSIPTLLGSL-QHVFVKKVAVNSGGKHCLALTTDGEVY 4179
Query: 204 SWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+WG E G LG S R + + ++ + ++ +ACG+AH+ +T
Sbjct: 4180 AWGEGEDGKLGHGNRLSYDRPKLLEHLNGMSVA-------------DIACGSAHSAAITA 4226
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ L +WG+GR G LG G + D P +V
Sbjct: 4227 SGHVL-TWGKGRYGRLGHGDSEDQLRPKLV 4255
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I S+ G + +A +AG ++ WG+ D G ++ + P V G +VKV
Sbjct: 4368 KIISIATGSLHCVACSDAGEVYTWGD---NDEGQLGDGTVTAIQRPRLVAALQGKHIVKV 4424
Query: 63 ACGSEHVVALVSA 75
CGS H +AL ++
Sbjct: 4425 TCGSAHTLALSTS 4437
>gi|344298015|ref|XP_003420690.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
HERC2-like [Loxodonta africana]
Length = 4838
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3053 AVHSGGRHATALTVDGKVFSWGEG---DDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3109
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE Y+WG G+LG GD ++L+PK+++ V +V
Sbjct: 3110 SSHSAAITSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3158
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3159 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3211
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3212 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3261
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3262 -VHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3305
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 118/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V ++K+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 482 ALAPQLVQGLASRNIIKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 533
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 534 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 585
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ ++P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 586 HGSSEDEVIPVLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 638
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 639 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 690
Query: 278 GTG 280
G G
Sbjct: 691 GHG 693
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P V G VV VA G
Sbjct: 4047 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVVESLRGIEVVDVAAG 4103
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y+WG G+LG D E +L+PK++E V ++
Sbjct: 4104 GAHSACVTAAGD--------LYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 4152
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4153 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4203
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4204 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4251
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4252 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4299
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S AI ++G L+ WG L + G + P V GH V++V
Sbjct: 3102 RIRDIACGSSHSAAITSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3158
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3159 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3209
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3210 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3260
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ AG V++WG + G N + T N P L+ G +
Sbjct: 3261 IVHVAVGALHCLAVTDAGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3309
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3310 GQKITRVACGSSHSV 3324
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 130/296 (43%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSP--VWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G G L S P P + + V KVA
Sbjct: 3000 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGLSSGTVPIPRQITALSSYVVKKVA 3053
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3054 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3102
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A +T +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3103 IRDIACGSSHSAAITSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3153
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3154 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3204
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3205 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3253
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4096 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4149
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4150 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4200
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4201 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4251
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4252 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4302
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4303 -QGKKVN---RVACGSAHTL 4318
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3949 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALAALRPVQLIGGEQTLFAVT 4005
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4006 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESV-QHVFIKKVAVNSGGKHCL 4056
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P V+ L + + +V V G H+
Sbjct: 4057 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVVESL-RGIEVVDVAAGGAHS 4107
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 4108 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 4156
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4157 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4184
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 613 SGDAQTLAVTENGQVWSWGDG---DYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 669
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 670 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 718
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 719 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEP-SALPGLDTKHIVGI 767
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 768 ACGPAQSFAWSSCSE-WSIGLR 788
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 518 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 577
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D + P+L++G G K D VACG+ A T+ VT++G
Sbjct: 578 RGN------YGRLGHGSSEDEVIPVLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 625
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 626 QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 90/209 (43%), Gaps = 30/209 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P E P + G T +
Sbjct: 3959 YGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPVQLI----GGEQTLFAV-------TAD 4007
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G T+S P ++ + Q+V++ V+V+ G H +SS G+V+S
Sbjct: 4008 GKLYATGYGAGGRLGIGGTESVSTPTLLESV-QHVFIKKVAVNSGGKHCLALSSEGEVYS 4066
Query: 205 WG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG E G LG + R +++ I + V VA G AH+ VT
Sbjct: 4067 WGEAEDGKLGHGNRSPCDRPRVVESLRGIEV-------------VDVAAGGAHSACVTAA 4113
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G L++WG+GR G LG + D P +V
Sbjct: 4114 G-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4141
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 168 ALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD 226
AL P+ V+ L + + ++ H +++ G+V+SWG G G + E
Sbjct: 482 ALAPQLVQGLASRNIIKIAAHSDGHHYLALAATGEVYSWGCGDG-GRLGHGDTVPLEEPK 540
Query: 227 AISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFF 286
IS G H V +ACG+ ++ +T +G +L++WGRG G LG G + D
Sbjct: 541 VISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGRGNYGRLGHGSSEDEV 593
Query: 287 APAIV 291
P +V
Sbjct: 594 IPVLV 598
>gi|195133162|ref|XP_002011008.1| GI16306 [Drosophila mojavensis]
gi|193906983|gb|EDW05850.1| GI16306 [Drosophila mojavensis]
Length = 5077
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 132/289 (45%), Gaps = 37/289 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + + P V + +ACG
Sbjct: 3152 AVHSGGKHALALTLDGKVFSWGE---GEDGKLGHGNRSTLDKPRLVEALRAKKIRDIACG 3208
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S GE Y +WG G+LG GD ++L+PK++ S V +V
Sbjct: 3209 SSHSAAISSQGELY--------TWGLGEYGRLGHGDNATQLKPKLVAAL---SGRRVIQV 3257
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L + + +++G G+ G+LG G ++ + P +++ L + ++
Sbjct: 3258 ACGSRDAQTLALTE------DGAVFSWGDGDFGKLGRGGSEGSSTPHEIERL-SGIGVIQ 3310
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD--AISPILISGNGPHGPKF 243
++CG + ++ AG+VW+WG L GD P I+G H
Sbjct: 3311 IECGAQFSLALTRAGEVWTWGKGDYYRL--------GHGGDQHVRKPQPIAGLRGH---- 3358
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ VA GA H + VTD G ++++WG G G+G T PA+V+
Sbjct: 3359 -RVIHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGSGNTFVNKKPALVI 3405
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 130/290 (44%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ G ++ WG + G + +S P V +G +V +ACG
Sbjct: 4305 AVNSGGKHCLALTTDGEVYAWGE---GEDGKLGHGNRMSYDRPKLVEHLNGMSVADIACG 4361
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ ++G +WG G+LG GD E +LRPK++E + ++
Sbjct: 4362 SAHSAAITASGHVL--------TWGKGRYGRLGHGDSEDQLRPKLVEAL---LGYRAIDI 4410
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + +P +++ L + ++
Sbjct: 4411 ACGSGDAQTLCITDDDN------VWSWGDGDYGKLGRGGSDGCKLPYKIESLAG-LGVIK 4463
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + R + A+ G
Sbjct: 4464 VECGSQFSVALTKSGAVYTWG--KGDFHRLGHGSVEHVRRPKKVAAL----------QGK 4511
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V +D G ++++WG G LG G P +V
Sbjct: 4512 KI---ISIATGSLHCVACSDAG-EVFTWGDNDEGQLGDGTVTAIQRPRLV 4557
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 106/233 (45%), Gaps = 32/233 (13%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V G +H +AL + GE Y +WG +G+LG G+R S RPK++E N S
Sbjct: 4304 VAVNSGGKHCLALTTDGEVY--------AWGEGEDGKLGHGNRMSYDRPKLVEHLNGMS- 4354
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V ++ CGS H+A +T T+G G G+LGHG ++ L P+ V+ L
Sbjct: 4355 --VADIACGSAHSAAIT--------ASGHVLTWGKGRYGRLGHGDSEDQLRPKLVEALLG 4404
Query: 180 YVYL-VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Y + ++ G T ++ +VWSWG + G L R + P I
Sbjct: 4405 YRAIDIACGSGDAQTLCITDDDNVWSWG-DGDYG-----KLGRGGSDGCKLPYKIESLAG 4458
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G ++V CG+ +V +T G +++WG+G LG G P V
Sbjct: 4459 LG-----VIKVECGSQFSVALTKSG-AVYTWGKGDFHRLGHGSVEHVRRPKKV 4505
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 32/205 (15%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC--GSFHTALLTHRK 139
+D Y+ G NG+LGLG + P + +Q + V +V G H LT
Sbjct: 3111 QDGKVYACGEGTNGRLGLGVTHNVPLPHQLPVLHQ---YVVKKVAVHSGGKHALALT--- 3164
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
L+ +++G GE+G+LGHG + P V+ L + + + CG H++ +SS
Sbjct: 3165 -----LDGKVFSWGEGEDGKLGHGNRSTLDKPRLVEAL-RAKKIRDIACGSSHSAAISSQ 3218
Query: 200 GDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AH 255
G++++WG+ E G LG NA+ + + A+S + +QVACG+ A
Sbjct: 3219 GELYTWGLGEYGRLGHGDNATQLKPKLVAALSGRRV-------------IQVACGSRDAQ 3265
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTG 280
T+ +T+DG ++SWG G G LG G
Sbjct: 3266 TLALTEDG-AVFSWGDGDFGKLGRG 3289
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 19/143 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G S+A+ +GA++ WG D G S+ P V G ++ +A
Sbjct: 4461 VIKVECGSQFSVALTKSGAVYTWGK---GDFHRLGHGSVEHVRRPKKVAALQGKKIISIA 4517
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H VA AGE ++WG N+ GQLG G + RP+++ +
Sbjct: 4518 TGSLHCVACSDAGEV--------FTWGDNDEGQLGDGTVTAIQRPRLVAALQGKH---IV 4566
Query: 124 EVTCGSFH-----TALLTHRKRP 141
+VTCGS H T+ L+ R RP
Sbjct: 4567 KVTCGSAHTLALSTSQLSERLRP 4589
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ ++ G SLA+ AG +W WG D G P P+ GH V+ VA
Sbjct: 3308 VIQIECGAQFSLALTRAGEVWTWGK---GDYYRLGHGGDQHVRKPQPIAGLRGHRVIHVA 3364
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ AG+ Y+WG N++GQ G G+ +P ++ + V
Sbjct: 3365 VGALHCLAVTDAGQV--------YAWGDNDHGQQGSGNTFVNKKPALVIGLDA---VIVN 3413
Query: 124 EVTCGSFHT 132
V CGS H+
Sbjct: 3414 RVACGSSHS 3422
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 37/218 (16%)
Query: 58 TVVKVA--CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
T + +A C H +A+ S + YSWG ++ +LG GD +R P IE+
Sbjct: 645 TFISIAAHCEGRHFLAVDS--------NFNAYSWGVGDSRRLGHGDCHARELPTKIESLV 696
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
+ V V CG ++A +T L +T+G G G+LGHGT+ +P V
Sbjct: 697 R----LVKSVYCGCSYSAAIT--------LGGNLYTWGRGTYGRLGHGTSDDQCLPAMVM 744
Query: 176 ELPQY-VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS 234
L + V V++ G HT ++S G V++WG + G N S ++ P LI
Sbjct: 745 ALKDHQVVDVALGSGDAHTLCLTSEGLVFAWG-DGDYGKLGNGS-----CNSSLLPQLID 798
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG 272
P+ Q +V GA ++ ++ +G +L+SWG+
Sbjct: 799 CL----PRVQ---RVFAGAQFSLALSCEG-QLYSWGKA 828
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 30/207 (14%)
Query: 89 WGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLES 147
WG N+ QLG G + S+++ P T ++ P + GS +++ +
Sbjct: 3066 WGLNDKEQLG-GLKGSKVKVPTFSPTISRLRP---IHIAGGSKSLFVVSQ--------DG 3113
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVDCGLFHTSVVSSAGDVWSWG 206
+ G G NG+LG G T + +P Q+ L QYV V+V G H ++ G V+SWG
Sbjct: 3114 KVYACGEGTNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWG 3173
Query: 207 M-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
E G LG ++L + +A+ K +D +ACG++H+ ++ G
Sbjct: 3174 EGEDGKLGHGNRSTLDKPRLVEAL----------RAKKIRD---IACGSSHSAAISSQG- 3219
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+L++WG G G LG G P +V
Sbjct: 3220 ELYTWGLGEYGRLGHGDNATQLKPKLV 3246
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 77/191 (40%), Gaps = 23/191 (12%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +L I + +W WG+ D G P + G V+KV CGS+
Sbjct: 4414 SGDAQTLCITDDDNVWSWGD---GDYGKLGRGGSDGCKLPYKIESLAGLGVIKVECGSQF 4470
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL +G Y+WG + +LG G E RPK + + + G
Sbjct: 4471 SVALTKSGAV--------YTWGKGDFHRLGHGSVEHVRRPKKVAALQGKK---IISIATG 4519
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
S H + D E W G + GQLG GT + P V L Q ++V V C
Sbjct: 4520 SLHCVACS------DAGEVFTW--GDNDEGQLGDGTVTAIQRPRLVAAL-QGKHIVKVTC 4570
Query: 189 GLFHTSVVSSA 199
G HT +S++
Sbjct: 4571 GSAHTLALSTS 4581
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 89/217 (41%), Gaps = 35/217 (16%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS---FTPSPVWDFHGHTVVKV 62
SV G S AI G L+ WG T G +S P+ V H VV V
Sbjct: 701 SVYCGCSYSAAITLGGNLYTWGR------GTYGRLGHGTSDDQCLPAMVMALKDHQVVDV 754
Query: 63 ACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
A GS H + L S G + ++WG + G+LG G S L P++I+ +
Sbjct: 755 ALGSGDAHTLCLTSEG--------LVFAWGDGDYGKLGNGSCNSSLLPQLIDCLPR---- 802
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGE--NGQLGHGTTQSALVPEQVKELP 178
V V G+ + L+ E +++G QL Q VP + L
Sbjct: 803 -VQRVFAGAQFSLALS--------CEGQLYSWGKASCLGHQLVERNVQGCSVPRLITGL- 852
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCP 215
Q+ +V V G+ H +SS+G+++ WG +CP
Sbjct: 853 QHKRIVDVAVGVAHCLALSSSGEIFGWGRNDNQQICP 889
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G+G++ +LGHG + +P +++ L + V SV CG +++ ++ G++++WG +
Sbjct: 668 YSWGVGDSRRLGHGDCHARELPTKIESLVRLVK--SVYCGCSYSAAITLGGNLYTWG--R 723
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
G L + D P ++ H + D V + G AHT+ +T +G +++W
Sbjct: 724 GT----YGRLGHGTSDDQCLPAMVMALKDH--QVVD-VALGSGDAHTLCLTSEGL-VFAW 775
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G G LG G P ++
Sbjct: 776 GDGDYGKLGNGSCNSSLLPQLI 797
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 32/210 (15%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y WG N+ GQLG G SR++ P E + P ++ G +T P+ L
Sbjct: 4217 YGWGHNHRGQLG-GLEGSRIKTPTPCEALSLLRP---VQLAGGEQSLFAVT----PDGKL 4268
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVW 203
+ G G G+LG G + S +P + L Q+V++ V+V+ G H +++ G+V+
Sbjct: 4269 ----FATGYGSGGRLGVGGSDSWAIPTLLGSL-QHVFVKKVAVNSGGKHCLALTTDGEVY 4323
Query: 204 SWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+WG E G LG S R + + ++ + ++ +ACG+AH+ +T
Sbjct: 4324 AWGEGEDGKLGHGNRMSYDRPKLVEHLNGMSVA-------------DIACGSAHSAAITA 4370
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ L +WG+GR G LG G + D P +V
Sbjct: 4371 SGHVL-TWGKGRYGRLGHGDSEDQLRPKLV 4399
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I S+ G + +A +AG ++ WG+ D G ++ + P V G +VKV
Sbjct: 4512 KIISIATGSLHCVACSDAGEVFTWGD---NDEGQLGDGTVTAIQRPRLVAALQGKHIVKV 4568
Query: 63 ACGSEHVVALVSA 75
CGS H +AL ++
Sbjct: 4569 TCGSAHTLALSTS 4581
>gi|345795569|ref|XP_535652.3| PREDICTED: E3 ISG15--protein ligase HERC5 [Canis lupus familiaris]
Length = 1263
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 100/209 (47%), Gaps = 27/209 (12%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSP--VWDFHGHTVVK 61
I + G SLA+ G L+ WG + + G + + P+P V G +V+
Sbjct: 379 IIQITCGDYHSLALSKGGELFAWGQ----NLHGQLGVGRLFTSIPTPQLVEHLSGVPLVQ 434
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
++ G H +AL +G YSWG N+ GQLGLG P +IE +
Sbjct: 435 ISAGKAHSMALSMSGNI--------YSWGRNDLGQLGLGHTNGEDFPSLIEALDNQK--- 483
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V + CG HTALLT + + +TFG G+ GQLGH +TQ+ L P V EL
Sbjct: 484 VEFLACGGSHTALLTK--------DGLVFTFGAGKYGQLGHNSTQNELRPRLVTELAGN- 534
Query: 182 YLVSVDCGLFHT-SVVSSAGDVWSWGMEK 209
+ V CG +HT + VS G V+S+G K
Sbjct: 535 RVTQVACGRWHTLAYVSDLGKVFSFGSGK 563
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 117/249 (46%), Gaps = 41/249 (16%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL-RPKIIETFNQ 116
+++++ CG H +AL GE ++WG N +GQLG+G + + P+++E
Sbjct: 378 SIIQITCGDYHSLALSKGGE--------LFAWGQNLHGQLGVGRLFTSIPTPQLVEHL-- 427
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S + +++ G H+ L+ + +++G + GQLG G T P ++
Sbjct: 428 -SGVPLVQISAGKAHSMALS--------MSGNIYSWGRNDLGQLGLGHTNGEDFPSLIEA 478
Query: 177 LP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS- 234
L Q V ++ CG HT++++ G V+++G K L N + + P L++
Sbjct: 479 LDNQKVEFLA--CGGSHTALLTKDGLVFTFGAGK------YGQLGHNSTQNELRPRLVTE 530
Query: 235 --GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
GN QVACG HT+ D K++S+G G+ G LG G T + P + +
Sbjct: 531 LAGN--------RVTQVACGRWHTLAYVSDLGKVFSFGSGKEGQLGNGGTHNQLIP-LPM 581
Query: 293 WPPLTEEFK 301
P EE K
Sbjct: 582 KLPSNEELK 590
>gi|15218867|ref|NP_176767.1| Regulator of chromosome condensation (RCC1) family with FYVE zinc
finger domain [Arabidopsis thaliana]
gi|6227017|gb|AAF06053.1|AC009513_9 Contains PF|00169 Pleckstrin homology domain, 6 PF|00415 Regulator
of chromosome condensation (RCC1) domains and a PF|01363
FYVE Zinc finger domain [Arabidopsis thaliana]
gi|332196320|gb|AEE34441.1| Regulator of chromosome condensation (RCC1) family with FYVE zinc
finger domain [Arabidopsis thaliana]
Length = 1006
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 139/296 (46%), Gaps = 44/296 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF--SLVSSFTPSPVWDFHGH--TVVK 61
SV + A+ +G L++WG +GG S F + D G TV+
Sbjct: 348 SVACSDHQTCAVTESGELYLWG--------IDGGTIEQSGSQFLTRKISDVLGGSLTVLS 399
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VACG+ H + S+G+ + ++G+ G LG G ES +PK +E+ +
Sbjct: 400 VACGAWHTAIVTSSGQLF--------TYGSGTFGVLGHGSLESVTKPKEVESLRR---MK 448
Query: 122 VYEVTCGSFHTALLTH----RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V V+CG +HTA + RK N +T+G G+ G+LGH ++ LVP V EL
Sbjct: 449 VISVSCGPWHTAAIVETANDRKFYNAKSCGKLFTWGDGDKGRLGHADSKRKLVPTCVTEL 508
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISG 235
+ + + V CG T +S +G V++ G + LG CP A +++ +L G
Sbjct: 509 IDHDF-IKVSCGWTLTVALSISGTVYTMGSSIHGQLG-CPRAK------DKSVNVVL--G 558
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
N Q +A G+ H ++T G +++WG+G +G LG G D +P +V
Sbjct: 559 NLTR----QFVKDIASGSHHVAVLTSFG-NVYTWGKGMNGQLGLGDVRDRNSPVLV 609
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 99/247 (40%), Gaps = 49/247 (19%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V ++ G++H + GE + WG N+G+LGL PK +E+
Sbjct: 294 VQSISLGAKHAALVTRQGEVF--------CWGNGNSGKLGLKVNIDIDHPKRVESLED-- 343
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE-L 177
AV V C T +T E W G Q G S + ++ + L
Sbjct: 344 -VAVRSVACSDHQTCAVTESG------ELYLWGIDGGTIEQSG-----SQFLTRKISDVL 391
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISG 235
+ ++SV CG +HT++V+S+G ++++G LG S+T+ + +++ + +
Sbjct: 392 GGSLTVLSVACGAWHTAIVTSSGQLFTYGSGTFGVLGHGSLESVTKPKEVESLRRMKV-- 449
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGY-----------KLWSWGRGRSGVLGTGKTID 284
+ V+CG HT + + KL++WG G G LG +
Sbjct: 450 -----------ISVSCGPWHTAAIVETANDRKFYNAKSCGKLFTWGDGDKGRLGHADSKR 498
Query: 285 FFAPAIV 291
P V
Sbjct: 499 KLVPTCV 505
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 23/178 (12%)
Query: 19 NAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGET 78
+ G L+ WG+ D G P+ V + H +KV+CG VAL +G
Sbjct: 476 SCGKLFTWGD---GDKGRLGHADSKRKLVPTCVTELIDHDFIKVSCGWTLTVALSISG-- 530
Query: 79 YKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
Y+ G++ +GQLG + + ++ + V ++ GS H A+LT
Sbjct: 531 ------TVYTMGSSIHGQLGCPRAKDKSVNVVLGNLTRQ---FVKDIASGSHHVAVLTSF 581
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
+T+G G NGQLG G + P V+ L + + S+ CGL T+ +
Sbjct: 582 --------GNVYTWGKGMNGQLGLGDVRDRNSPVLVEPLGDRL-VESIACGLNLTAAI 630
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +A GS HV L S G Y +WG NGQLGLGD R P ++E
Sbjct: 565 VKDIASGSHHVAVLTSFGNVY--------TWGKGMNGQLGLGDVRDRNSPVLVEPLGDR- 615
Query: 119 PWAVYEVTCG-SFHTALLTHRK 139
V + CG + A+ H++
Sbjct: 616 --LVESIACGLNLTAAICLHKE 635
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 201 DVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT 260
D+ WG GL + S +N DA+SP L+ D ++ GA H LVT
Sbjct: 260 DIMIWGAITGL---IDGSKNQN---DALSPKLL-----ESATMFDVQSISLGAKHAALVT 308
Query: 261 DDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G +++ WG G SG LG ID P V
Sbjct: 309 RQG-EVFCWGNGNSGKLGLKVNIDIDHPKRV 338
>gi|330836304|ref|YP_004410945.1| hypothetical protein [Sphaerochaeta coccoides DSM 17374]
gi|329748207|gb|AEC01563.1| Listeria/Bacterioides repeat-containing protein [Sphaerochaeta
coccoides DSM 17374]
Length = 786
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 130/305 (42%), Gaps = 45/305 (14%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWM-----WGNCPLPDSSTEGGFSLVSSFTPSPVWDFHG 56
S + +V AG ++ + G LW +G L DS S + TP V G
Sbjct: 463 SDVAAVSAGEKHTMILKKDGTLWATGENKYGQLGLGDSD-----SGIDKSTPMQVSSM-G 516
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES---RLRPKIIET 113
V V+ G+ H + L G ++ G NN+GQLGLGD S R P +
Sbjct: 517 SDVAAVSTGASHTMILKKNG--------TLWATGQNNDGQLGLGDSSSGTDRSTPVQVLA 568
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
D V V+ GS+HT +L + W G +GQLG GTT S P Q
Sbjct: 569 MGSD----VEAVSAGSYHTMILKK--------DGTLWATGRNYDGQLGDGTTTSRTTPVQ 616
Query: 174 VKELPQY----VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNAS-LTRNEAGDAI 228
VK P + + +V G FHT ++ G +W G + L S +T N++
Sbjct: 617 VKASPTFGDFMTNVKAVSAGGFHTMILKKDGTLWVTGRNQYGQLGDGTSGITNNKS---- 672
Query: 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+P+ + + G D V V+ G +T+++ DG LW+ GR G LG G D P
Sbjct: 673 TPVQVRDSSGVG-FMTDVVAVSAGLHYTIILKKDG-TLWATGRNNFGQLGVGNKTDRKTP 730
Query: 289 AIVLW 293
V +
Sbjct: 731 VKVAF 735
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 127/307 (41%), Gaps = 47/307 (15%)
Query: 24 WMWGNCPLPDSSTEGGFSLVSSFT-PSPVWDFHGHTVVK----VACGSEHVVALVSAGET 78
+ +G LPD + ++ SFT P+ + +VK V+ G H + L + G
Sbjct: 375 YFYGWNTLPDGNGSH-YAASESFTMPADDVTLYAQWLVKGIKSVSAGYYHTMILKTDG-- 431
Query: 79 YKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
++ G N GQLG+GD R P + + D V V+ G HT +L
Sbjct: 432 ------TLWATGENKAGQLGVGDNTDRSTPVQVSSMGSD----VAAVSAGEKHTMILKK- 480
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSAL---VPEQVKELPQYVYLVSVDCGLFHTSV 195
+ W G + GQLG G + S + P QV + V VS G HT +
Sbjct: 481 -------DGTLWATGENKYGQLGLGDSDSGIDKSTPMQVSSMGSDVAAVS--TGASHTMI 531
Query: 196 VSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ G +W+ G LGL ++S T D +P+ + G D V+ G+
Sbjct: 532 LKKNGTLWATGQNNDGQLGLGDSSSGT-----DRSTPVQVLAMG------SDVEAVSAGS 580
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQD--ELNTGGLD 311
HT+++ DG LW+ GR G LG G T P V P +F + ++ GG
Sbjct: 581 YHTMILKKDG-TLWATGRNYDGQLGDGTTTSRTTPVQVKASPTFGDFMTNVKAVSAGGFH 639
Query: 312 DEIKTKD 318
I KD
Sbjct: 640 TMILKKD 646
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 77/181 (42%), Gaps = 30/181 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHG- 56
M+ + +V AGG ++ + G LW+ G L D ++ G + S TP V D G
Sbjct: 627 MTNVKAVSAGGFHTMILKKDGTLWVTGRNQYGQLGDGTS--GITNNKS-TPVQVRDSSGV 683
Query: 57 ---HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
VV V+ G + + L +D ++ G NN GQLG+G++ R P +
Sbjct: 684 GFMTDVVAVSAGLHYTIIL--------KKDGTLWATGRNNFGQLGVGNKTDRKTPVKVAF 735
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
D V V+ G HT L +K + W G NGQLG + PEQ
Sbjct: 736 MGTD----VAAVSAGYNHT--LIQKK------DGSLWATGFNTNGQLGVSDNTNRSTPEQ 783
Query: 174 V 174
V
Sbjct: 784 V 784
>gi|218781264|ref|YP_002432582.1| chromosome condensation regulator RCC1 [Desulfatibacillum
alkenivorans AK-01]
gi|218762648|gb|ACL05114.1| regulator of chromosome condensation RCC1 [Desulfatibacillum
alkenivorans AK-01]
Length = 1525
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 123/290 (42%), Gaps = 48/290 (16%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
V AGG SLA+ G+LW WG+ G S V+ FTP+ V K+A G
Sbjct: 986 VAAGGNFSLALKTDGSLWSWGDNGTGQLGLGLGQS-VNVFTPTKVDAL--PPAAKIAAGD 1042
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR---ESRLRPKIIETFNQDSPWAVY 123
H +AL G +SWG N++GQLGLG ++ RP+ I + V
Sbjct: 1043 NHALALAPDGSV--------WSWGYNSDGQLGLGSSGTYSTKNRPQKINAISN-----VA 1089
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
+ CG H+ + + W++G GQLG G S P++V + +
Sbjct: 1090 AIACGGSHSLAVAR--------DGSLWSWGYNYYGQLGLGDNYSKTTPQKVNAISN---V 1138
Query: 184 VSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++ G +++ ++ G VWSWG + LGL N + + +S +
Sbjct: 1139 AAIAAGEYYSLALTRDGSVWSWGDNSDGQLGLGDNEDRNTPQKVEVLSNV---------- 1188
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A G H++ +T DG +WSWGR G LG D P V
Sbjct: 1189 -----AAIAAGEDHSLALTRDG-SVWSWGRNSRGQLGLDDNDDRNTPQPV 1232
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 136/319 (42%), Gaps = 50/319 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL---VSSFTPSPVWDFHGH 57
+S + ++ GG SLA+ G+ W WG + G L VS TP V
Sbjct: 596 ISNVAAIACGGSHSLALARDGSFWSWG------YNYYGQLGLGDNVSKTTPRKVNAL--S 647
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +A G H +AL G +SWG N GQLGLGD + R P+ + +
Sbjct: 648 NVVAMAAGDRHSLALTLDGS--------LWSWGDNTYGQLGLGDNDHRNTPRKVNAISN- 698
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + G H+ LT + W++G GQLG G P+ V +
Sbjct: 699 ----VVAIAAGYRHSLALTR--------DGSVWSWGNNTRGQLGLGDNDDRNTPQPVTTI 746
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGME--KGLGLCPNASLTRNEAGDAISPILISG 235
+ ++ G ++ +S G VW+WG LG+ + SL + I+IS
Sbjct: 747 SN---IKAIAVGNNYSIAISEEGLVWAWGYNCSGQLGIGTHGSLADENTPQKV--IVIS- 800
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
+ V ++ G++H++ +T+DG LW+WG +G + + I++ + ++
Sbjct: 801 ---------NVVGLSAGSSHSIALTEDG-ALWAWGNNEAGQIAAEEAIEYIDNPVQVFQS 850
Query: 296 LTEEFKQDELNTGGLDDEI 314
+++ G DDE+
Sbjct: 851 GEVFHLYFDVDADGADDEL 869
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 92/206 (44%), Gaps = 28/206 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + SV AG SLA+ N G +W WGN T G + + TP+P+ +
Sbjct: 215 LSNVKSVAAGEFFSLALKNDGTVWAWGNNESAQLGT--GIAGEAVATPAPIAVL--SNIT 270
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +AL ED ++WGAN +GQLG GD E+ P + +
Sbjct: 271 AIAAGRRHAMALA--------EDGSVWAWGANGSGQLGFGDFETPKAPGRVSSLAD---- 318
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G FH+ LT + + W +G +G+LG T +P QV +
Sbjct: 319 -VTAIASGWFHSLALTS--------DGVLWAWGNNGDGRLGTDATSDQSLPAQVSSISNA 369
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWG 206
V G H+ +++ G VWSWG
Sbjct: 370 VSFAG---GQRHSLAIAADGSVWSWG 392
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 116/278 (41%), Gaps = 44/278 (15%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
S+ AGG +LA+ + G++W WG + G + + P + V +AC
Sbjct: 547 ASIAAGGGHALALASDGSVWSWGRNSVGQLGLGTGGTYSTENRPQKINAI--SNVAAIAC 604
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G H +AL G +SWG N GQLGLGD S+ P+ + + V
Sbjct: 605 GGSHSLALARDGS--------FWSWGYNYYGQLGLGDNVSKTTPRKVNALSN-----VVA 651
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
+ G H+ LT L+ W++G GQLG G P +V + +V
Sbjct: 652 MAAGDRHSLALT--------LDGSLWSWGDNTYGQLGLGDNDHRNTPRKVNAISN---VV 700
Query: 185 SVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
++ G H+ ++ G VWSWG LGL N + IS I
Sbjct: 701 AIAAGYRHSLALTRDGSVWSWGNNTRGQLGLGDNDDRNTPQPVTTISNIKA--------- 751
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+A G +++ ++++G +W+WG SG LG G
Sbjct: 752 ------IAVGNNYSIAISEEGL-VWAWGYNCSGQLGIG 782
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 125/285 (43%), Gaps = 52/285 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + ++ GG SLA+ G+LW WG + G L +++ + T
Sbjct: 1085 ISNVAAIACGGSHSLAVARDGSLWSWG------YNYYGQLGLGDNYSKT--------TPQ 1130
Query: 61 KVACGSEHVVALVSAGETYK---GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
KV S VA ++AGE Y D +SWG N++GQLGLGD E R P+ +E +
Sbjct: 1131 KVNAISN--VAAIAAGEYYSLALTRDGSVWSWGDNSDGQLGLGDNEDRNTPQKVEVLSN- 1187
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + G H+ LT + W++G GQLG P+ V +
Sbjct: 1188 ----VAAIAAGEDHSLALTR--------DGSVWSWGRNSRGQLGLDDNDDRNTPQPVTTI 1235
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISG 235
+ ++ G H+ +S G W+WG + LG+ + SL NE
Sbjct: 1236 SN---IKAIAAGNSHSFAISEEGLAWAWGYNYDGQLGIGTSGSLA-NE------------ 1279
Query: 236 NGPHGPK-FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
N P K + V ++ G H++ +T+DG LW+WG G +G+
Sbjct: 1280 NTPQKVKVISNVVGLSGGNYHSLALTEDG-ALWAWGDNDDGQIGS 1323
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 119/282 (42%), Gaps = 52/282 (18%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPS----PVWDFHGHTVVKV 62
+ AG +LA+ G++W WG +++G L SS T S P V +
Sbjct: 1038 IAAGDNHALALAPDGSVWSWG------YNSDGQLGLGSSGTYSTKNRPQKINAISNVAAI 1091
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG H +A+ G +SWG N GQLGLGD S+ P+ + + V
Sbjct: 1092 ACGGSHSLAVARDGS--------LWSWGYNYYGQLGLGDNYSKTTPQKVNAISN-----V 1138
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ G +++ LT + W++G +GQLG G + P++V+ L
Sbjct: 1139 AAIAAGEYYSLALTR--------DGSVWSWGDNSDGQLGLGDNEDRNTPQKVEVLSN--- 1187
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ ++ G H+ ++ G VWSWG LGL N + IS I
Sbjct: 1188 VAAIAAGEDHSLALTRDGSVWSWGRNSRGQLGLDDNDDRNTPQPVTTISNIKA------- 1240
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+A G +H+ ++++G W+WG G LG G +
Sbjct: 1241 --------IAAGNSHSFAISEEGLA-WAWGYNYDGQLGIGTS 1273
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 117/280 (41%), Gaps = 56/280 (20%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTP--SPVWDFHGHTVVKVACGSEHVVA 71
SLA+ G +W+WG D + G ++ P +PV +V VA G +A
Sbjct: 79 SLALKGDGTVWVWGR---NDYNQLGLGDDINRLAPEQAPVV----SNIVSVAAGRLFSLA 131
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
L S G ++WG N GQLG+GD ++RL P + V + G +H
Sbjct: 132 LASDGS--------LWAWGGNYYGQLGMGDNDNRLTPSKTPGLSD-----VAAIAGGDYH 178
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF 191
T W G ++GQLG T A P QV L + SV G F
Sbjct: 179 ALAATQSGE--------VWAMGRNDHGQLGF-TGDHADAPVQVAGLSN---VKSVAAGEF 226
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI---SPILISGNGPHGPKFQDPVQ 248
+ + + G VW+WG + +A L AG+A+ +PI + +
Sbjct: 227 FSLALKNDGTVWAWGNNE------SAQLGTGIAGEAVATPAPIAV---------LSNITA 271
Query: 249 VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+A G H + + +DG +W+WG SG LG G DF P
Sbjct: 272 IAAGRRHAMALAEDG-SVWAWGANGSGQLGFG---DFETP 307
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 127/334 (38%), Gaps = 71/334 (21%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG------------NCPLPDSSTE----------G 38
+S I SV AG + SLA+ + G+LW WG + L S T G
Sbjct: 116 VSNIVSVAAGRLFSLALASDGSLWAWGGNYYGQLGMGDNDNRLTPSKTPGLSDVAAIAGG 175
Query: 39 GFSLVSSFTPSPVW----DFHG-------HTVVKVACGSEHVVALVSAGETYK---GEDL 84
+ +++ VW + HG H V V V+AGE + D
Sbjct: 176 DYHALAATQSGEVWAMGRNDHGQLGFTGDHADAPVQVAGLSNVKSVAAGEFFSLALKNDG 235
Query: 85 VCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPND 143
++WG N + QLG G E+ P I + + + G H L
Sbjct: 236 TVWAWGNNESAQLGTGIAGEAVATPAPIAVLSN-----ITAIAAGRRHAMALAE------ 284
Query: 144 MLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVW 203
+ W +G +GQLG G ++ P +V L + S G FH+ ++S G +W
Sbjct: 285 --DGSVWAWGANGSGQLGFGDFETPKAPGRVSSLADVTAIAS---GWFHSLALTSDGVLW 339
Query: 204 SWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
+WG + L + D P +S + V A G H++ + DG
Sbjct: 340 AWGNNG------DGRLGTDATSDQSLPAQVS-------SISNAVSFAGGQRHSLAIAADG 386
Query: 264 YKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
+WSWG G LG ++ PA VL P T
Sbjct: 387 -SVWSWGGNAYGQLG----VESLTPASVLTPVHT 415
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 21/114 (18%)
Query: 171 PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGME--KGLGLCPNASLTRNEAGDAI 228
P+++ + + ++ CG H+ ++ G WSWG LGL N S T +A+
Sbjct: 590 PQKINAISN---VAAIACGGSHSLALARDGSFWSWGYNYYGQLGLGDNVSKTTPRKVNAL 646
Query: 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
S + V +A G H++ +T DG LWSWG G LG G
Sbjct: 647 SNV---------------VAMAAGDRHSLALTLDG-SLWSWGDNTYGQLGLGDN 684
>gi|113205375|gb|AAU93591.2| Zinc finger protein, putative [Solanum demissum]
Length = 1127
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 130/294 (44%), Gaps = 37/294 (12%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDF-HGHTVVKVACG 65
+ G S A+ ++G L+ WG+ S G S S + P V G V V+CG
Sbjct: 365 IACGEYHSCAVTSSGDLYTWGD-GAKSSGLLGHRSEASHWIPKKVCGLMEGLRVSHVSCG 423
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG + ++G G LG GDR + P+ +ETFN +V
Sbjct: 424 PWHTALITSAGRLF--------TFGDGTFGALGHGDRSGCITPREVETFNG---LKTLKV 472
Query: 126 TCGSFHTALLTH-----RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
CG +HTA + RP+D +T+G G+ G+LGHG + L P+ + L
Sbjct: 473 ACGVWHTAAVVELMSGLDSRPSDAPSGTLFTWGDGDKGKLGHGDNKPRLAPQCITALVDK 532
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGME-KGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ V C T +++ G V++ G G CP A + +SPI +
Sbjct: 533 SF-SEVACSYAMTVALTTTGRVYTMGSNVYGQLGCPLA--------NGMSPICVED---- 579
Query: 240 GPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D +++CG+ H ++T ++++WG+G +G LG G + P +V
Sbjct: 580 --YLVDSTVEEISCGSHHVAVLTSR-TEVYTWGKGENGQLGHGDCENKCTPTLV 630
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 108/246 (43%), Gaps = 42/246 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V ++CG+ H + + GE + SWG G+LG G PK+I+ F
Sbjct: 310 VQNISCGNRHAMLVTKQGEAF--------SWGEEAGGRLGHGAETDVSHPKLIKNFKG-- 359
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG +H+ +T D+ W G +G LGH + S +P++V L
Sbjct: 360 -MNVELIACGEYHSCAVTS---SGDLYT---WGDGAKSSGLLGHRSEASHWIPKKVCGLM 412
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI-SGNG 237
+ + + V CG +HT++++SAG ++++G + G +L + I+P + + NG
Sbjct: 413 EGLRVSHVSCGPWHTALITSAGRLFTFG-DGTFG-----ALGHGDRSGCITPREVETFNG 466
Query: 238 PHGPKFQDPVQVACGAAHTVLVTD------------DGYKLWSWGRGRSGVLGTGKTIDF 285
++VACG HT V + L++WG G G LG G
Sbjct: 467 ------LKTLKVACGVWHTAAVVELMSGLDSRPSDAPSGTLFTWGDGDKGKLGHGDNKPR 520
Query: 286 FAPAIV 291
AP +
Sbjct: 521 LAPQCI 526
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Query: 13 MSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFH-GHTVVKVACGSEHVVA 71
M++A+ G ++ G+ + + G L + +P V D+ TV +++CGS HV
Sbjct: 543 MTVALTTTGRVYTMGS----NVYGQLGCPLANGMSPICVEDYLVDSTVEEISCGSHHVAV 598
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGS-F 130
L S E Y +WG NGQLG GD E++ P +++ V + CGS F
Sbjct: 599 LTSRTEVY--------TWGKGENGQLGHGDCENKCTPTLVDILRDKQ---VKRIVCGSNF 647
Query: 131 HTALLTH 137
A+ H
Sbjct: 648 SAAICVH 654
>gi|296196028|ref|XP_002745648.1| PREDICTED: E3 ISG15--protein ligase HERC5 [Callithrix jacchus]
Length = 1024
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 97/205 (47%), Gaps = 23/205 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G SLA+ G L+ WG G S+ P V G + ++
Sbjct: 139 KIIQITCGDYHSLALSKGGELFAWGQN--LHGQLGVGRKFPSTTAPQIVEHLAGIPLAQI 196
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL +G YSWG N GQLGL ES+ P +IE + V
Sbjct: 197 SAGEAHSMALSMSGNI--------YSWGKNEFGQLGLDHTESKDSPSLIEALDNQK---V 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTALLT + + +TFG G++GQLGH +TQ+ L P V EL
Sbjct: 246 EFLACGGSHTALLTQ--------DGLLFTFGAGKHGQLGHNSTQNELRPCLVAELAGN-R 296
Query: 183 LVSVDCGLFHT-SVVSSAGDVWSWG 206
+ + CG +HT + VS G V+S+G
Sbjct: 297 VTQIACGRWHTLAYVSDLGKVFSFG 321
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 112/235 (47%), Gaps = 40/235 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
++++ CG H +AL GE + +WG N +GQLG+G + S P+I+E
Sbjct: 140 IIQITCGDYHSLALSKGGELF--------AWGQNLHGQLGVGRKFPSTTAPQIVEHL-AG 190
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +++ G H+ L+ + +++G E GQLG T+S P ++ L
Sbjct: 191 IPLA--QISAGEAHSMALS--------MSGNIYSWGKNEFGQLGLDHTESKDSPSLIEAL 240
Query: 178 P-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS-- 234
Q V ++ CG HT++++ G ++++G K + L N + + P L++
Sbjct: 241 DNQKVEFLA--CGGSHTALLTQDGLLFTFGAGK------HGQLGHNSTQNELRPCLVAEL 292
Query: 235 -GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
GN Q+ACG HT+ D K++S+G G+ G LG G T D P
Sbjct: 293 AGN--------RVTQIACGRWHTLAYVSDLGKVFSFGSGKEGQLGNGGTRDQLIP 339
>gi|242071255|ref|XP_002450904.1| hypothetical protein SORBIDRAFT_05g020900 [Sorghum bicolor]
gi|241936747|gb|EES09892.1| hypothetical protein SORBIDRAFT_05g020900 [Sorghum bicolor]
Length = 418
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 131/309 (42%), Gaps = 56/309 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V AG S A+ G L++WG G V S TP+ V + V
Sbjct: 119 RVVEVSAGNHHSCAVTADGKLFVWGRNSGGQLGLGKGAGKVVS-TPTKVDCLTDFRIKMV 177
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL---------RPKIIET 113
A GSEH +A+ GE SWGA +G+LG G + S L P++I+
Sbjct: 178 ALGSEHSIAVTEEGEVL--------SWGAAGSGRLGHGRQSSILGFSLTTSEYTPRLIKN 229
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
F+ + ++ G H+A + + F G+ + G G + A P
Sbjct: 230 FDGIK---IKKIAAGMLHSACIDEKGT----------LFIFGQKTEKGFGRSNEAFRPNI 276
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
V+E+P + V CG +HT VV+ +GD++SWG + N L SP ++
Sbjct: 277 VEEIP---FSEEVACGGYHTCVVTDSGDLYSWGSNE------NGCLGLGGTDMVCSPEIL 327
Query: 234 SGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWSW----------GRGRSGVLGTGKT 282
+ F+ PV +V+CG HT +++ D W W G G LG G
Sbjct: 328 KSS-----LFKLPVSKVSCGWKHTAVISGDDIYTWGWGGANGTFFEEGHSSGGQLGHGND 382
Query: 283 IDFFAPAIV 291
+D+F P +V
Sbjct: 383 VDYFEPMMV 391
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 109/267 (40%), Gaps = 43/267 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG-----NCPLPDSSTEGGFSLVSS-FTPSPVWDFHG 56
+I V G S+A+ G + WG S+ GFSL +S +TP + +F G
Sbjct: 173 RIKMVALGSEHSIAVTEEGEVLSWGAAGSGRLGHGRQSSILGFSLTTSEYTPRLIKNFDG 232
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+ K+A G H + G + + G G RP I+E
Sbjct: 233 IKIKKIAAGMLHSACIDEKGTLFI----------FGQKTEKGFGRSNEAFRPNIVE---- 278
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ P++ EV CG +HT ++T D+ +++G ENG LG G T PE +K
Sbjct: 279 EIPFS-EEVACGGYHTCVVTDS---GDL-----YSWGSNENGCLGLGGTDMVCSPEILKS 329
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGD---VWSWGMEKGL----GLCPNASLTRNEAGDAIS 229
+ + V CG HT+V+S GD W WG G G L D
Sbjct: 330 SLFKLPVSKVSCGWKHTAVIS--GDDIYTWGWGGANGTFFEEGHSSGGQLGHGNDVDYFE 387
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHT 256
P+++ P G K V V+CG HT
Sbjct: 388 PMMV----PFG-KNARAVHVSCGFNHT 409
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 88/198 (44%), Gaps = 29/198 (14%)
Query: 89 WGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESM 148
WG + G+LGLG ESR P + F + + CG HT LT R
Sbjct: 35 WGNGDYGRLGLGVLESRWSPTVCPFFLARAADPPASLACGGAHTLFLTQSGR-------- 86
Query: 149 CWTFGLGENGQLGHGTTQS-ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM 207
+ GL + GQLG G++ + L P +V + V V V G H+ V++ G ++ WG
Sbjct: 87 VFATGLNDFGQLGVGSSVTHTLEPVEVSGFHERV--VEVSAGNHHSCAVTADGKLFVWGR 144
Query: 208 EKG--LGLCPNAS--LTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
G LGL A ++ D ++ I VA G+ H++ VT++G
Sbjct: 145 NSGGQLGLGKGAGKVVSTPTKVDCLTDFRIK-------------MVALGSEHSIAVTEEG 191
Query: 264 YKLWSWGRGRSGVLGTGK 281
L SWG SG LG G+
Sbjct: 192 EVL-SWGAAGSGRLGHGR 208
>gi|195399111|ref|XP_002058164.1| GJ15642 [Drosophila virilis]
gi|194150588|gb|EDW66272.1| GJ15642 [Drosophila virilis]
Length = 5062
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 133/289 (46%), Gaps = 37/289 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + + P V + +ACG
Sbjct: 3136 AVHSGGKHALALTLDGKVFSWGE---GEDGKLGHGNRSTLDKPRLVEALRAKKIRDIACG 3192
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S GE Y +WG G+LG GD ++L+PK++ + V +V
Sbjct: 3193 SSHSAAISSQGELY--------TWGLGEYGRLGHGDNATQLKPKLVTALHGRR---VIQV 3241
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L + + +++G G+ G+LG G ++ + P +++ L + ++
Sbjct: 3242 ACGSRDAQTLALTE------DGAVFSWGDGDFGKLGRGGSEGSATPHEIERL-SGIGVIQ 3294
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD--AISPILISGNGPHGPKF 243
++CG + ++ AG+VW+WG L GD P I+G +
Sbjct: 3295 IECGAQFSLALTRAGEVWTWGKGDYYRL--------GHGGDQHVRKPQPIAGL-----RG 3341
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ + VA GA H + VTD G ++++WG G G+G T PA+V+
Sbjct: 3342 RRVIHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGSGNTFVNKKPALVI 3389
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 130/290 (44%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ G ++ WG + G + +S P + +G +V +ACG
Sbjct: 4290 AVNSGGKHCLALTTDGEVYAWGE---GEDGKLGHGNRMSYDRPKLLEHLNGMSVADIACG 4346
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ ++G +WG G+LG GD E +LRPK++E + ++
Sbjct: 4347 SAHSAAITASGHVL--------TWGKGRYGRLGHGDSEDQLRPKLVEAL---LGYRAIDI 4395
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + +P +++ L + ++
Sbjct: 4396 ACGSGDAQTLCITDDDN------VWSWGDGDYGKLGRGGSDGCKLPYKIESLAG-LGVIK 4448
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + R + A+ G
Sbjct: 4449 VECGSQFSVALTKSGAVYTWG--KGDFHRLGHGSVDHVRRPKKVAAL----------QGK 4496
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V +D G ++++WG G LG G P +V
Sbjct: 4497 KI---ISIATGSLHCVACSDAG-EVYTWGDNDEGQLGDGTVTAIQRPRLV 4542
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 106/233 (45%), Gaps = 32/233 (13%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V G +H +AL + GE Y +WG +G+LG G+R S RPK++E N S
Sbjct: 4289 VAVNSGGKHCLALTTDGEVY--------AWGEGEDGKLGHGNRMSYDRPKLLEHLNGMS- 4339
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V ++ CGS H+A +T T+G G G+LGHG ++ L P+ V+ L
Sbjct: 4340 --VADIACGSAHSAAIT--------ASGHVLTWGKGRYGRLGHGDSEDQLRPKLVEALLG 4389
Query: 180 YVYL-VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Y + ++ G T ++ +VWSWG + G L R + P I
Sbjct: 4390 YRAIDIACGSGDAQTLCITDDDNVWSWG-DGDYG-----KLGRGGSDGCKLPYKIESLAG 4443
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G ++V CG+ +V +T G +++WG+G LG G P V
Sbjct: 4444 LG-----VIKVECGSQFSVALTKSG-AVYTWGKGDFHRLGHGSVDHVRRPKKV 4490
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 90/204 (44%), Gaps = 21/204 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S AI + G L+ WG L + G + P V HG V++V
Sbjct: 3185 KIRDIACGSSHSAAISSQGELYTWG---LGEYGRLGHGDNATQLKPKLVTALHGRRVIQV 3241
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L ED +SWG + G+LG G E P IE S V
Sbjct: 3242 ACGSRDAQTLALT------EDGAVFSWGDGDFGKLGRGGSEGSATPHEIERL---SGIGV 3292
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT R ++ WT+G G+ +LGHG Q P+ + L +
Sbjct: 3293 IQIECGAQFSLALT---RAGEV-----WTWGKGDYYRLGHGGDQHVRKPQPIAGL-RGRR 3343
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG 206
++ V G H V+ AG V++WG
Sbjct: 3344 VIHVAVGALHCLAVTDAGQVYAWG 3367
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 32/205 (15%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC--GSFHTALLTHRK 139
+D Y+ G NG+LGLG + P + +Q + V +V G H LT
Sbjct: 3095 QDGKVYACGEGTNGRLGLGVTHNVPLPHQLPVLHQ---YVVKKVAVHSGGKHALALT--- 3148
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
L+ +++G GE+G+LGHG + P V+ L + + + CG H++ +SS
Sbjct: 3149 -----LDGKVFSWGEGEDGKLGHGNRSTLDKPRLVEAL-RAKKIRDIACGSSHSAAISSQ 3202
Query: 200 GDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AH 255
G++++WG+ E G LG NA+ + P L++ HG + +QVACG+ A
Sbjct: 3203 GELYTWGLGEYGRLGHGDNAT--------QLKPKLVTAL--HGRRV---IQVACGSRDAQ 3249
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTG 280
T+ +T+DG ++SWG G G LG G
Sbjct: 3250 TLALTEDG-AVFSWGDGDFGKLGRG 3273
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 19/143 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G S+A+ +GA++ WG D G S+ P V G ++ +A
Sbjct: 4446 VIKVECGSQFSVALTKSGAVYTWGK---GDFHRLGHGSVDHVRRPKKVAALQGKKIISIA 4502
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H VA AGE Y+WG N+ GQLG G + RP+++ +
Sbjct: 4503 TGSLHCVACSDAGEV--------YTWGDNDEGQLGDGTVTAIQRPRLVAALQGKH---IV 4551
Query: 124 EVTCGSFH-----TALLTHRKRP 141
+VTCGS H T+ L+ R RP
Sbjct: 4552 KVTCGSAHTLALSTSQLSERLRP 4574
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 27/187 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
YSWG ++ +LG GD +R P IE+ + V V CG ++A +T L
Sbjct: 639 YSWGVGDSRRLGHGDCHARELPTKIESLVRR----VQSVYCGCSYSAAIT--------LR 686
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL-VSVDCGLFHTSVVSSAGDVWSW 205
+T+G G G+LGHG + +P V L + L V++ G HT ++ G V++W
Sbjct: 687 GNLYTWGRGTYGRLGHGNSDDQCMPAMVMALKDHQVLDVALGSGDAHTLCLTRGGLVYAW 746
Query: 206 GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
G + G N S ++ P+LI P+ Q +V G+ ++ +T +G +
Sbjct: 747 G-DGDYGKLGNGS-----CNSSLQPLLIECL----PRVQ---RVFAGSQFSLALTCEG-Q 792
Query: 266 LWSWGRG 272
L+SWG+
Sbjct: 793 LYSWGKA 799
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 30/207 (14%)
Query: 89 WGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLES 147
WG N+ QLG G + S+++ P +T ++ P + GS +++ +
Sbjct: 3050 WGLNDKEQLG-GLKGSKVKVPTFSQTISRLRP---IHIAGGSKSLFVVSQ--------DG 3097
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVDCGLFHTSVVSSAGDVWSWG 206
+ G G NG+LG G T + +P Q+ L QYV V+V G H ++ G V+SWG
Sbjct: 3098 KVYACGEGTNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWG 3157
Query: 207 M-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
E G LG ++L + +A+ K +D +ACG++H+ ++ G
Sbjct: 3158 EGEDGKLGHGNRSTLDKPRLVEAL----------RAKKIRD---IACGSSHSAAISSQG- 3203
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+L++WG G G LG G P +V
Sbjct: 3204 ELYTWGLGEYGRLGHGDNATQLKPKLV 3230
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 90/222 (40%), Gaps = 35/222 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS---FTPSPVWDFHGH 57
+ ++ SV G S AI G L+ WG T G +S P+ V H
Sbjct: 667 VRRVQSVYCGCSYSAAITLRGNLYTWGR------GTYGRLGHGNSDDQCMPAMVMALKDH 720
Query: 58 TVVKVACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
V+ VA GS H + L G + Y+WG + G+LG G S L+P +IE
Sbjct: 721 QVLDVALGSGDAHTLCLTRGG--------LVYAWGDGDYGKLGNGSCNSSLQPLLIECLP 772
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGE--NGQLGHGTTQSALVPEQ 173
+ V V GS + LT E +++G QL Q VP
Sbjct: 773 R-----VQRVFAGSQFSLALT--------CEGQLYSWGKASCLGHQLVERNVQGCSVPRL 819
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCP 215
+ L Q+ +V V G+ H +SS G+++ WG +CP
Sbjct: 820 ITSL-QHKRIVHVAVGVAHCLALSSNGEIFGWGRNDNQQICP 860
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ ++ G SLA+ AG +W WG D G P P+ G V+ VA
Sbjct: 3292 VIQIECGAQFSLALTRAGEVWTWGK---GDYYRLGHGGDQHVRKPQPIAGLRGRRVIHVA 3348
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ AG+ Y+WG N++GQ G G+ +P ++ D+ + V
Sbjct: 3349 VGALHCLAVTDAGQV--------YAWGDNDHGQQGSGNTFVNKKPALV--IGLDAVF-VN 3397
Query: 124 EVTCGSFHT 132
V CGS H+
Sbjct: 3398 RVACGSSHS 3406
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 79/191 (41%), Gaps = 23/191 (12%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +L I + +W WG+ D G P + G V+KV CGS+
Sbjct: 4399 SGDAQTLCITDDDNVWSWGD---GDYGKLGRGGSDGCKLPYKIESLAGLGVIKVECGSQF 4455
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL +G Y+WG + +LG G + RPK + + + G
Sbjct: 4456 SVALTKSGAV--------YTWGKGDFHRLGHGSVDHVRRPKKVAALQGKK---IISIATG 4504
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
S H + D E +T+G + GQLG GT + P V L Q ++V V C
Sbjct: 4505 SLHCVACS------DAGE--VYTWGDNDEGQLGDGTVTAIQRPRLVAAL-QGKHIVKVTC 4555
Query: 189 GLFHTSVVSSA 199
G HT +S++
Sbjct: 4556 GSAHTLALSTS 4566
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 12/142 (8%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G+G++ +LGHG + +P +++ L + V SV CG +++ ++ G++++WG +
Sbjct: 639 YSWGVGDSRRLGHGDCHARELPTKIESLVRRVQ--SVYCGCSYSAAITLRGNLYTWG--R 694
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
G L + D P ++ H + D V + G AHT+ +T G +++W
Sbjct: 695 GT----YGRLGHGNSDDQCMPAMVMALKDH--QVLD-VALGSGDAHTLCLTRGGL-VYAW 746
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G G LG G P ++
Sbjct: 747 GDGDYGKLGNGSCNSSLQPLLI 768
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 32/210 (15%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y WG N+ GQLG G SR++ P E + P ++ G +T P+ L
Sbjct: 4202 YGWGHNHRGQLG-GLEGSRIKTPTPCEALSLLRP---IQLAGGEQSLFAVT----PDGKL 4253
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVW 203
+ G G G+LG G + S +P + L Q+V++ V+V+ G H +++ G+V+
Sbjct: 4254 ----FATGYGSGGRLGVGGSDSWAIPTLLGSL-QHVFVKKVAVNSGGKHCLALTTDGEVY 4308
Query: 204 SWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+WG E G LG S R + + ++ + ++ +ACG+AH+ +T
Sbjct: 4309 AWGEGEDGKLGHGNRMSYDRPKLLEHLNGMSVA-------------DIACGSAHSAAITA 4355
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ L +WG+GR G LG G + D P +V
Sbjct: 4356 SGHVL-TWGKGRYGRLGHGDSEDQLRPKLV 4384
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I S+ G + +A +AG ++ WG+ D G ++ + P V G +VKV
Sbjct: 4497 KIISIATGSLHCVACSDAGEVYTWGD---NDEGQLGDGTVTAIQRPRLVAALQGKHIVKV 4553
Query: 63 ACGSEHVVALVSA 75
CGS H +AL ++
Sbjct: 4554 TCGSAHTLALSTS 4566
>gi|410910330|ref|XP_003968643.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like [Takifugu
rubripes]
Length = 527
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 115/251 (45%), Gaps = 31/251 (12%)
Query: 42 LVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSA-GETYKGEDLVCYSWGANNNGQLGLG 100
L S+ P + G +V ++ G+ VA+ +A GE + SWG N QLG G
Sbjct: 59 LQSTIEPRRIDVLCGKKIVSLSYGTGPHVAIATADGEVF--------SWGHNGYSQLGNG 110
Query: 101 DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQL 160
L P ++ T V EV CGS HT LT + + +G +GQ+
Sbjct: 111 TSTHGLTPALVST--NLLGKRVIEVACGSHHTIALT--------TDGEVFAWGYNNSGQV 160
Query: 161 GHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
G G+T + P +V Q +V++ CG + V +G+++ WG N L
Sbjct: 161 GSGSTANQPTPRRVSSCLQNKVVVNIACGQLCSMAVLDSGEIYGWGYN------CNGQLG 214
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
G+ +P I+ + + +QVACG AHT+ +TD+G+ ++SWG G LGTG
Sbjct: 215 LGNNGNQQTPCRIA-----ALQGVNVIQVACGYAHTIALTDEGF-VYSWGANSYGQLGTG 268
Query: 281 KTIDFFAPAIV 291
+ P ++
Sbjct: 269 NKCNQAVPTLI 279
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 13/111 (11%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWG-NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+ ++ G + S+A+ ++G ++ WG NC G + TP + G V++V
Sbjct: 183 VVNIACGQLCSMAVLDSGEIYGWGYNCNGQLGLGNNG----NQQTPCRIAALQGVNVIQV 238
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
ACG H +AL G YSWGAN+ GQLG G++ ++ P +I T
Sbjct: 239 ACGYAHTIALTDEG--------FVYSWGANSYGQLGTGNKCNQAVPTLINT 281
>gi|301121999|ref|XP_002908726.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262099488|gb|EEY57540.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 2298
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 136/315 (43%), Gaps = 45/315 (14%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
S P + V V+C H V G Y++G N+ GQLG D
Sbjct: 498 SESVPKIIRSLENKIVRLVSCSYYHTVLACEDGNLQN-----LYTFGRNDYGQLGHNDSI 552
Query: 104 SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
R P+ +E S + V CG +HT ++T + + FG + GQLG
Sbjct: 553 DRKIPQFVEAL---SDQQIVSVACGQYHTMVVT--------VSGKAFAFGKNDYGQLGID 601
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASL 219
T ++ L P QV+ + + + CG +HT + S ++++G + GLG NAS
Sbjct: 602 TMENQLAPVQVRGGLERQECLEIRCGYYHTIALCSGAHLFAFGRNDYGQLGLGR-SNASS 660
Query: 220 TRN----EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSG 275
T N + + + ++ G +D V++ACG HT+ V+D+G ++ +GR G
Sbjct: 661 TSNLQLQQQRFSNARLIDELEG------KDIVRIACGCYHTIAVSDNGV-MYVFGRNNHG 713
Query: 276 VLGTGKTI---------DFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLEGAEERD 326
LGTG T DF I L + F + TGG +D+ +D G ++ +
Sbjct: 714 QLGTGDTTERVYPFPIDDFVGKRIAL---VAAGFYHTVVLTGGKEDDKNEQD-SGNDKEE 769
Query: 327 EKLSSAMEEMKLLQS 341
SS + +L S
Sbjct: 770 VSASSGITHSTILSS 784
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 99/235 (42%), Gaps = 32/235 (13%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG--DRESRLRPKIIETFNQ 116
++++ G+EH V L + G+ + + G N+NGQ G G R S L E
Sbjct: 408 IIQIGAGNEHTVVLTADGKVF--------TCGYNDNGQCGQGGTARVSHLS----EIPKM 455
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
DS + G HT L++ R T G GQLGHG T S VP+ ++
Sbjct: 456 DSGSSQAHAYNGCEHTILVSTDGR--------VATCGYNYRGQLGHGNTTSESVPKIIRS 507
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L + + V C +HT + G++ + G L N++ D P +
Sbjct: 508 LENKIVRL-VSCSYYHTVLACEDGNLQNL---YTFGRNDYGQLGHNDSIDRKIPQFVEAL 563
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
Q V VACG HT++VT G K +++G+ G LG + AP V
Sbjct: 564 SD-----QQIVSVACGQYHTMVVTVSG-KAFAFGKNDYGQLGIDTMENQLAPVQV 612
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 96/232 (41%), Gaps = 39/232 (16%)
Query: 71 ALVSAGETYKGED---LVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC 127
A VS T ED +S G N+ G+LG GD SR + I+ Q + ++
Sbjct: 357 AFVSNDTTIFHEDEGEREVWSCGQNSYGELGHGDTASRKSFERIQALQQKE---IIQIGA 413
Query: 128 GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVD 187
G+ HT +LT + +T G +NGQ G G T ++ ++
Sbjct: 414 GNEHTVVLT--------ADGKVFTCGYNDNGQCGQGGTARVSHLSEIPKMDSGSSQAHAY 465
Query: 188 CGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
G HT +VS+ G V + G + G G N +++ I+ S
Sbjct: 466 NGCEHTILVSTDGRVATCGYNYRGQLGHG---------NTTSESVPKIIRS--------L 508
Query: 244 QDPV--QVACGAAHTVLVTDDG--YKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ + V+C HTVL +DG L+++GR G LG +ID P V
Sbjct: 509 ENKIVRLVSCSYYHTVLACEDGNLQNLYTFGRNDYGQLGHNDSIDRKIPQFV 560
>gi|348583539|ref|XP_003477530.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like [Cavia
porcellus]
Length = 551
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 111/236 (47%), Gaps = 34/236 (14%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
K+AC S H+V + GE + SWG N GQLG G L P I T
Sbjct: 99 KIACLSYGSGPHIVLATTEGEVF--------SWGHNAYGQLGNGTINHGLVPSHIST--N 148
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V EV CGS+H+ +LT E W G +GQ+G G+T + +P +V
Sbjct: 149 LSNKQVTEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGSGSTANQAIPRRVTG 200
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q +V++ CG + V G+V+ WG N L +G+ +P ++
Sbjct: 201 CLQNKVVVNIACGQMCSMAVVDTGEVYVWGYNG------NGQLGLGSSGNQPTPCRVA-- 252
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G + Q +VACG AHT+++TD+G ++++WG G LGTG + P V+
Sbjct: 253 ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNKSNQSYPTPVV 304
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 107/254 (42%), Gaps = 47/254 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 154 VTEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQAIPRRVTGCLQNK 205
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + D E W G NGQLG G++ + P +V L
Sbjct: 206 --VVVNIACGQMCSMAVV------DTGEVYVW--GYNGNGQLGLGSSGNQPTPCRVAAL- 254
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILIS 234
Q + + V CG HT V++ G V++WG + G G N S +P+++
Sbjct: 255 QGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYP--------TPVVVE 306
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDF 285
K + AC + HT G ++ WG RG+S L T
Sbjct: 307 -------KDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVTLPHLTHFSCTDDVFAC 359
Query: 286 FAPAIVLWPPLTEE 299
F+ V W L+ E
Sbjct: 360 FSTPAVTWRLLSVE 373
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M S+A+ + G +++WG + G L SS TP V G V
Sbjct: 207 VVNIACGQMCSMAVVDTGEVYVWG------YNGNGQLGLGSSGNQPTPCRVAALQGIRVQ 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 261 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYP 300
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 15/140 (10%)
Query: 152 FGLGEN--GQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
F LG N G LG G QS L P ++ L + + +S G H + ++ G+V+SWG
Sbjct: 68 FVLGTNCSGCLGLGDVQSTLEPRRLDSLSDKKIACLSYGSGP-HIVLATTEGEVFSWG-H 125
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
G N ++ + P IS N + + +VACG+ H++++T DG ++++
Sbjct: 126 NAYGQLGNGTINH-----GLVPSHISTNLSN----KQVTEVACGSYHSLVLTSDG-EVFA 175
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG SG +G+G T + P
Sbjct: 176 WGYNNSGQVGSGSTANQAIP 195
>gi|301615126|ref|XP_002937025.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase
HERC2-like [Xenopus (Silurana) tropicalis]
Length = 4845
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 129/292 (44%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV +A G
Sbjct: 4056 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGTEVVDIAAG 4112
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AGE Y+WG G+LG GD E +L+PK++E + V ++
Sbjct: 4113 GAHSACITAAGE--------LYTWGKGRYGRLGHGDSEDQLKPKLVEALQG---YRVIDI 4161
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L V +
Sbjct: 4162 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-VGV 4212
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4213 TKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4260
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4261 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4308
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 119/255 (46%), Gaps = 38/255 (14%)
Query: 44 SSFTPSPVWDFHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD 101
++ P V +VK+A +H +AL + E +SWG + G+LG GD
Sbjct: 480 NTLGPQLVQGLASRNIVKIAAHPDGQHYLALSATSE--------LFSWGCGDGGRLGHGD 531
Query: 102 RESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQL 160
S PK++ + + + V + CGS ++A +T + +T+G G G+L
Sbjct: 532 TVSLEEPKLVSALSGKQTGKQVIHIACGSTYSAAITA--------DGELYTWGRGNYGRL 583
Query: 161 GHGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNAS 218
GHG+++ VP V L + + +V V CG T V+ G VWSWG + G
Sbjct: 584 GHGSSEDQTVPMLVTGL-KGLKVVDVSCGSGDAQTLSVTENGQVWSWG-DGDYG-----K 636
Query: 219 LTRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGV 276
L R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G +
Sbjct: 637 LGRGGSDGCKTPKLIE-------KLQDLDIVKVRCGSQFSIAITKDG-QVYSWGKGDNQR 688
Query: 277 LGTGKTIDFFAPAIV 291
LG G P I+
Sbjct: 689 LGHGTEEHVRYPKIM 703
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 21/204 (10%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 3055 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 3111
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+GE Y+WG G+LG GD ++L+PK+++ V +V
Sbjct: 3112 SSHSAAITSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3160
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3161 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQA-VCQ 3213
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEK 209
++CG + ++ +G VW+W K
Sbjct: 3214 IECGAQFSLALTKSGVVWTWXXTK 3237
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 121/274 (44%), Gaps = 55/274 (20%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 3002 AGGSKSLFAVTAEGKVYACGE------ATNGRLGLGISSGTVPIPRQITALSNYVVKKVA 3055
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3056 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3104
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A +T +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3105 IRDIACGSSHSAAITSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3155
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3156 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3206
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
NG Q Q+ CGA ++ +T G +W+W
Sbjct: 3207 NG------QAVCQIECGAQFSLALTKSGV-VWTW 3233
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 109/258 (42%), Gaps = 36/258 (13%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+++ + AGG S I AG L+ WG G P V G+ V+
Sbjct: 4104 TEVVDIAAGGAHSACITAAGELYTWGK---GRYGRLGHGDSEDQLKPKLVEALQGYRVID 4160
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4161 IACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TGVG 4211
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4212 VTKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-QGK 4262
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4263 KVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVA--ALQ 4312
Query: 240 GPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4313 GKKIN---RVACGSAHTL 4327
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 127/279 (45%), Gaps = 43/279 (15%)
Query: 8 KAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSE 67
K G+ S A +++WG L D GG PS VV+VA GS+
Sbjct: 2951 KTAGLESTATIRT-KVFVWG---LNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSK 3006
Query: 68 HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVT 126
+ A+ + G+ Y+ G NG+LGLG + P+ I S + V +V
Sbjct: 3007 SLFAVTAEGKV--------YACGEATNGRLGLGISSGTVPIPRQITAL---SNYVVKKVA 3055
Query: 127 C--GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
G H LT ++ +++G G++G+LGH + + P ++ L + +
Sbjct: 3056 VHSGGRHATALT--------VDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEAL-KTKRIR 3106
Query: 185 SVDCGLFHTSVVSSAGDVWSWGM-EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+ CG H++ ++S+G++++WG+ E G L + + P ++ H
Sbjct: 3107 DIACGSSHSAAITSSGELYTWGLGEYG-------RLGHGDNTTQLKPKMVKVLLGH---- 3155
Query: 244 QDPVQVACGA--AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+QVACG+ A T+ +TD+G ++SWG G G LG G
Sbjct: 3156 -RVIQVACGSRDAQTLALTDEGL-VFSWGDGDFGKLGRG 3192
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 118/269 (43%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3958 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4014
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4015 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4065
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + +V + G H+
Sbjct: 4066 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGTEVVDIAAGGAHS 4116
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ +++AG++++WG + L ++ D + P L+ G + D +ACG+
Sbjct: 4117 ACITAAGELYTWGKGR------YGRLGHGDSEDQLKPKLV--EALQGYRVID---IACGS 4165
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4166 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4193
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 84/214 (39%), Gaps = 30/214 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
S +G +L++ G +W WG+ D G TP + +VKV CG
Sbjct: 609 SCGSGDAQTLSVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDIVKVRCG 665
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S+ +A+ G+ Y SWG +N +LG G E PKI+ V +V
Sbjct: 666 SQFSIAITKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKIMNGLQGKK---VVDV 714
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ--SALVPEQVKELPQYVYL 183
GS H LT E W G N Q H T + VP + L ++
Sbjct: 715 AVGSTHCLALTESG------EVYSW----GSNDQCQHFDTLRIAKPVPSVLPGLDSK-HI 763
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCP 215
V + CG + SS + WS G+ + +CP
Sbjct: 764 VGISCGPAQSFAWSSCSE-WSIGLRVPFVVDVCP 796
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 48/218 (22%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG G ++++ C + T RP ++
Sbjct: 3968 YGWGHNHRGQLG-GIEGAKVK---------------VPTPCEALATL------RPVQLIG 4005
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 4006 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4064
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+SS G+V+SWG + + L P +I + + V +A G
Sbjct: 4065 LALSSEGEVYSWGEAE------DGKLGHGNRSPCDRPRVI-----ESLRGTEVVDIAAGG 4113
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
AH+ +T G +L++WG+GR G LG G + D P +V
Sbjct: 4114 AHSACITAAG-ELYTWGKGRYGRLGHGDSEDQLKPKLV 4150
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I V+ G S+AI G ++ WG D+ G + P + G VV VA
Sbjct: 659 IVKVRCGSQFSIAITKDGQVYSWGK---GDNQRLGHGTEEHVRYPKIMNGLQGKKVVDVA 715
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQ 96
GS H +AL +GE YSWG+N+ Q
Sbjct: 716 VGSTHCLALTESGEV--------YSWGSNDQCQ 740
>gi|219125443|ref|XP_002182991.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405785|gb|EEC45727.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 341
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 33/245 (13%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+ V G V ++ACGS H V L + GE ++WG ++G+LG GD +
Sbjct: 24 PTYVDALRGVGVQQIACGSGHTVVLTTDGEV--------FTWGRGDDGRLGHGDNGWKYV 75
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
P++ ++ + V +VTCGS+HTA +T N L +T+G G G+LGHG
Sbjct: 76 PRMTQSL---AGQIVLQVTCGSYHTAAVT----GNGDL----YTWGGGMYGKLGHGDEAG 124
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG-MEKGLGLCPNASLTRNEAGD 226
P++V+ L + + CG HT++V+++G +++WG E G+ A E
Sbjct: 125 HATPKRVEALVG-ATVAQIACGSRHTAIVTASGALYTWGDKENGV-----AGHGETEGHQ 178
Query: 227 AISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFF 286
+ +L S + Q++ HT +VTD G +L++WG G+ G LG +
Sbjct: 179 YLPRLLES------MAAKRVAQISACGFHTAIVTDAG-ELFTWGEGKFGRLGHMSERNCH 231
Query: 287 APAIV 291
+P IV
Sbjct: 232 SPTIV 236
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
++WG +GQLGLGD + P ++ V ++ CGS HT +LT +
Sbjct: 3 FTWGRGEDGQLGLGDTSDQDEPTYVDALR---GVGVQQIACGSGHTVVLT--------TD 51
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSW- 205
+T+G G++G+LGHG VP + L + L V CG +HT+ V+ GD+++W
Sbjct: 52 GEVFTWGRGDDGRLGHGDNGWKYVPRMTQSLAGQIVL-QVTCGSYHTAAVTGNGDLYTWG 110
Query: 206 -GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
GM LG A + +A+ ++ Q+ACG+ HT +VT G
Sbjct: 111 GGMYGKLGHGDEAGHATPKRVEALVGATVA-------------QIACGSRHTAIVTASG- 156
Query: 265 KLWSWGRGRSGVLGTGKT 282
L++WG +GV G G+T
Sbjct: 157 ALYTWGDKENGVAGHGET 174
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 130/299 (43%), Gaps = 56/299 (18%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPD--SSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+ V G + A+ G L+ WG E G + TP V G TV +
Sbjct: 87 VLQVTCGSYHTAAVTGNGDLYTWGGGMYGKLGHGDEAGHA-----TPKRVEALVGATVAQ 141
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES-RLRPKIIETFNQDSPW 120
+ACGS H + ++G Y+WG NG G G+ E + P+++E+
Sbjct: 142 IACGSRHTAIVTASG--------ALYTWGDKENGVAGHGETEGHQYLPRLLESMAAKR-- 191
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V +++ FHTA++T D E W G G+ G+LGH + ++ P V
Sbjct: 192 -VAQISACGFHTAIVT------DAGELFTW--GEGKFGRLGHMSERNCHSPTIVD----- 237
Query: 181 VYLVS-----VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
Y+V V CG FHT+VVS G ++++G + + L N+ + ++P +
Sbjct: 238 -YMVGKKPRQVSCGGFHTAVVSEDGRLYTFGGGE------HGQLGHNDRVNKMTPTFV-- 288
Query: 236 NGPHGPKFQDPV---QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ D + Q+ CG +H+V +T G +++WG G G LG G P V
Sbjct: 289 ------EALDGMFVSQITCGWSHSVALTVKGL-VYTWGNGDHGKLGHGNGRKVAVPQAV 340
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 22/173 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + A G + + +AG L+ WG G S + +P+ V G +V
Sbjct: 191 RVAQISACGFHTAIVTDAGELFTWGEGKF---GRLGHMSERNCHSPTIVDYMVGKKPRQV 247
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+CG H A+VS ED Y++G +GQLG DR +++ P +E + V
Sbjct: 248 SCGGFHT-AVVS-------EDGRLYTFGGGEHGQLGHNDRVNKMTPTFVEALD---GMFV 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++TCG H+ LT ++ + +T+G G++G+LGHG + VP+ V+
Sbjct: 297 SQITCGWSHSVALT--------VKGLVYTWGNGDHGKLGHGNGRKVAVPQAVE 341
>gi|410947368|ref|XP_003980421.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 1
[Felis catus]
Length = 551
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 112/236 (47%), Gaps = 34/236 (14%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
K+AC S H+V + GE + +WG N QLG G L P I T
Sbjct: 99 KIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTTNHGLMPCHIST--N 148
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V EV CGS+H+ +LT E W G +GQ+G G+T + +P +V
Sbjct: 149 LSNKQVTEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGSGSTANQPIPRRVTG 200
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q +V++ CG + V + G+V+ WG N L +G+ +P IS
Sbjct: 201 CLQNKVVVNIACGQMCSMAVVNTGEVYVWGYNG------NGQLGLGSSGNQPTPCRIS-- 252
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G + Q +VACG AHT+++TD+G ++++WG G LGTG + PA V+
Sbjct: 253 ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNKSNQSYPAPVV 304
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 110/253 (43%), Gaps = 45/253 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 154 VTEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQPIPRRVTGCLQNK 205
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + + + +G NGQLG G++ + P ++ L
Sbjct: 206 --VVVNIACGQMCSMAVVNTGE--------VYVWGYNGNGQLGLGSSGNQPTPCRISAL- 254
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAI-SPILISG 235
Q + + V CG HT V++ G V++WG LG T N++ + +P+++
Sbjct: 255 QGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLG-------TGNKSNQSYPAPVVVE- 306
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFF 286
K + AC AHT G ++ WG RG+S +L T F
Sbjct: 307 ------KDRIIEIAACHLAHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACF 360
Query: 287 APAIVLWPPLTEE 299
A V W L+ E
Sbjct: 361 ATPAVSWRLLSVE 373
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M S+A+ N G +++WG + G L SS TP + G V
Sbjct: 207 VVNIACGQMCSMAVVNTGEVYVWG------YNGNGQLGLGSSGNQPTPCRISALQGIRVQ 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 261 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYP 300
>gi|410947370|ref|XP_003980422.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 2
[Felis catus]
Length = 527
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 112/236 (47%), Gaps = 34/236 (14%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
K+AC S H+V + GE + +WG N QLG G L P I T
Sbjct: 75 KIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTTNHGLMPCHIST--N 124
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V EV CGS+H+ +LT E W G +GQ+G G+T + +P +V
Sbjct: 125 LSNKQVTEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGSGSTANQPIPRRVTG 176
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q +V++ CG + V + G+V+ WG N L +G+ +P IS
Sbjct: 177 CLQNKVVVNIACGQMCSMAVVNTGEVYVWGYNG------NGQLGLGSSGNQPTPCRIS-- 228
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G + Q +VACG AHT+++TD+G ++++WG G LGTG + PA V+
Sbjct: 229 ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNKSNQSYPAPVV 280
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 110/253 (43%), Gaps = 45/253 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 130 VTEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQPIPRRVTGCLQNK 181
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + + + +G NGQLG G++ + P ++ L
Sbjct: 182 --VVVNIACGQMCSMAVVNTGEV--------YVWGYNGNGQLGLGSSGNQPTPCRISAL- 230
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAI-SPILISG 235
Q + + V CG HT V++ G V++WG LG T N++ + +P+++
Sbjct: 231 QGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLG-------TGNKSNQSYPAPVVVE- 282
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFF 286
K + AC AHT G ++ WG RG+S +L T F
Sbjct: 283 ------KDRIIEIAACHLAHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACF 336
Query: 287 APAIVLWPPLTEE 299
A V W L+ E
Sbjct: 337 ATPAVSWRLLSVE 349
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M S+A+ N G +++WG + G L SS TP + G V
Sbjct: 183 VVNIACGQMCSMAVVNTGEVYVWG------YNGNGQLGLGSSGNQPTPCRISALQGIRVQ 236
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 237 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYP 276
>gi|198471444|ref|XP_001355626.2| GA11166 [Drosophila pseudoobscura pseudoobscura]
gi|198145920|gb|EAL32685.2| GA11166 [Drosophila pseudoobscura pseudoobscura]
Length = 5072
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 132/289 (45%), Gaps = 37/289 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + + P V + VACG
Sbjct: 3186 AVHSGGKHALALTLDGKVFSWGEG---EDGKLGHGNRTTLDKPRLVETLRSKKIRDVACG 3242
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S GE Y +WG G+LG GD ++L+PK++ V +V
Sbjct: 3243 SSHSAAISSQGELY--------TWGLGEYGRLGHGDNSTQLKPKLVAALAGRR---VIQV 3291
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L + + +++G G+ G+LG G ++ + P +++ L + ++
Sbjct: 3292 ACGSRDAQTLALTE------DGAVFSWGDGDFGKLGRGGSEGSDTPHEIERL-SGIGVIQ 3344
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD--AISPILISGNGPHGPKF 243
++CG + ++ AG+VW+WG L GD P I+G +
Sbjct: 3345 IECGAQFSLALTRAGEVWTWGKGDYYRL--------GHGGDQHVRKPQPIAGL-----RG 3391
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ + VA GA H + VTD G ++++WG G G+G T PA+V+
Sbjct: 3392 RRVIHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGSGNTFVNKKPALVI 3439
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 129/290 (44%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ G ++ WG + G + +S P V +G V +ACG
Sbjct: 4327 AVNSGGKHCLALTTEGEVYAWGEG---EDGKLGHGNRMSYDRPKLVEHLNGMNVADIACG 4383
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ ++G +WG G+LG GD E +LRP+++E + ++
Sbjct: 4384 SAHSAAITASGHVL--------TWGKGRYGRLGHGDSEDQLRPQLVEALLG---YRAIDI 4432
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + +P +++ L + ++
Sbjct: 4433 ACGSGDAQTLCINDDDN------VWSWGDGDYGKLGRGGSDGCKLPYKIESLAG-LGVIK 4485
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + R + A+ G
Sbjct: 4486 VECGSQFSVALTKSGAVYTWG--KGDFHRLGHGSVDHVRRPKKVAAL----------QGK 4533
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V +D G ++++WG G LG G P +V
Sbjct: 4534 KI---ISIATGSLHCVACSDSG-EVYTWGDNDEGQLGDGTVTAIQRPRLV 4579
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 106/233 (45%), Gaps = 32/233 (13%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V G +H +AL + GE Y +WG +G+LG G+R S RPK++E N +
Sbjct: 4326 VAVNSGGKHCLALTTEGEVY--------AWGEGEDGKLGHGNRMSYDRPKLVEHLNGMN- 4376
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V ++ CGS H+A +T T+G G G+LGHG ++ L P+ V+ L
Sbjct: 4377 --VADIACGSAHSAAIT--------ASGHVLTWGKGRYGRLGHGDSEDQLRPQLVEALLG 4426
Query: 180 YVYL-VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Y + ++ G T ++ +VWSWG + G L R + P I
Sbjct: 4427 YRAIDIACGSGDAQTLCINDDDNVWSWG-DGDYG-----KLGRGGSDGCKLPYKIESLAG 4480
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G ++V CG+ +V +T G +++WG+G LG G P V
Sbjct: 4481 LG-----VIKVECGSQFSVALTKSG-AVYTWGKGDFHRLGHGSVDHVRRPKKV 4527
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 89/204 (43%), Gaps = 21/204 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G S AI + G L+ WG L + G + P V G V++V
Sbjct: 3235 KIRDVACGSSHSAAISSQGELYTWG---LGEYGRLGHGDNSTQLKPKLVAALAGRRVIQV 3291
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L ED +SWG + G+LG G E P IE S V
Sbjct: 3292 ACGSRDAQTLALT------EDGAVFSWGDGDFGKLGRGGSEGSDTPHEIERL---SGIGV 3342
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT R ++ WT+G G+ +LGHG Q P+ + L +
Sbjct: 3343 IQIECGAQFSLALT---RAGEV-----WTWGKGDYYRLGHGGDQHVRKPQPIAGL-RGRR 3393
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG 206
++ V G H V+ AG V++WG
Sbjct: 3394 VIHVAVGALHCLAVTDAGQVYAWG 3417
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 129/286 (45%), Gaps = 49/286 (17%)
Query: 9 AGGMMSLAIDN--AGAL--------WMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
AGG +SL D+ AGAL +WG L D GG P+
Sbjct: 3073 AGGSVSLHGDHGMAGALDQDLPCTVMVWG---LNDKEQLGGLKGSKVKVPTFSQTISRLR 3129
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ +A GS+ + + G++ Y+ G NG+LGLG + P + +Q
Sbjct: 3130 PIHIAGGSKSLFIV--------GQNGKVYACGEGTNGRLGLGVTHNVPLPHQLPVLHQ-- 3179
Query: 119 PWAVYEVTC--GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ V +V G H LT L+ +++G GE+G+LGHG + P V+
Sbjct: 3180 -YVVKKVAVHSGGKHALALT--------LDGKVFSWGEGEDGKLGHGNRTTLDKPRLVET 3230
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L + + V CG H++ +SS G++++WG+ + L + + P L++
Sbjct: 3231 L-RSKKIRDVACGSSHSAAISSQGELYTWGLGE------YGRLGHGDNSTQLKPKLVAAL 3283
Query: 237 GPHGPKFQDPVQVACGA--AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
G + +QVACG+ A T+ +T+DG ++SWG G G LG G
Sbjct: 3284 A--GRRV---IQVACGSRDAQTLALTEDG-AVFSWGDGDFGKLGRG 3323
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 67/150 (44%), Gaps = 21/150 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G S+A+ +GA++ WG D G S+ P V G ++ +A
Sbjct: 4483 VIKVECGSQFSVALTKSGAVYTWGKG---DFHRLGHGSVDHVRRPKKVAALQGKKIISIA 4539
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H VA +GE Y +WG N+ GQLG G + RP+++ +
Sbjct: 4540 TGSLHCVACSDSGEVY--------TWGDNDEGQLGDGTVTAIQRPRLVAALQGKH---IV 4588
Query: 124 EVTCGSFHTALLTH-------RKRPNDMLE 146
+VTCGS HT L+ R PN LE
Sbjct: 4589 KVTCGSAHTLALSTSQLSERLRPLPNPPLE 4618
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 27/187 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
YSWG + +LG GD +R P I ++ V V CG ++A +T
Sbjct: 642 YSWGNGEDHRLGHGDTHARAVPTKITLLDR----CVKAVFCGCSYSAAIT--------CS 689
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL-VSVDCGLFHTSVVSSAGDVWSW 205
+T+G G +LGHG + +P V L ++ + V++ G H+ ++S G V++W
Sbjct: 690 GNLYTWGRGTYARLGHGNSDDQPLPTVVMALTEHEIIDVALGSGDAHSLCLTSEGHVYAW 749
Query: 206 GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
G + G N +L ++SP+L+ PK Q +V GA ++ +T DG +
Sbjct: 750 G-DADYGKLGNGNLN-----GSMSPVLVESL----PKVQ---RVFAGAQFSMALTTDG-Q 795
Query: 266 LWSWGRG 272
L+SWG+
Sbjct: 796 LYSWGKA 802
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 98/216 (45%), Gaps = 32/216 (14%)
Query: 82 EDLVC--YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
+DL C WG N+ QLG G + S+++ P +T ++ P + GS ++
Sbjct: 3091 QDLPCTVMVWGLNDKEQLG-GLKGSKVKVPTFSQTISRLRP---IHIAGGSKSLFIVGQN 3146
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVDCGLFHTSVVS 197
+ + G G NG+LG G T + +P Q+ L QYV V+V G H ++
Sbjct: 3147 GK--------VYACGEGTNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALT 3198
Query: 198 SAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
G V+SWG E G LG +L + + + K +D VACG++H
Sbjct: 3199 LDGKVFSWGEGEDGKLGHGNRTTLDKPRLVETL----------RSKKIRD---VACGSSH 3245
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ ++ G +L++WG G G LG G P +V
Sbjct: 3246 SAAISSQG-ELYTWGLGEYGRLGHGDNSTQLKPKLV 3280
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 23/191 (12%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +L I++ +W WG+ D G P + G V+KV CGS+
Sbjct: 4436 SGDAQTLCINDDDNVWSWGDG---DYGKLGRGGSDGCKLPYKIESLAGLGVIKVECGSQF 4492
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL +G Y+WG + +LG G + RPK + + + G
Sbjct: 4493 SVALTKSG--------AVYTWGKGDFHRLGHGSVDHVRRPKKVAALQGKK---IISIATG 4541
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
S H + +T+G + GQLG GT + P V L Q ++V V C
Sbjct: 4542 SLHCVACSD--------SGEVYTWGDNDEGQLGDGTVTAIQRPRLVAAL-QGKHIVKVTC 4592
Query: 189 GLFHTSVVSSA 199
G HT +S++
Sbjct: 4593 GSAHTLALSTS 4603
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ ++ G SLA+ AG +W WG D G P P+ G V+ VA
Sbjct: 3342 VIQIECGAQFSLALTRAGEVWTWGKG---DYYRLGHGGDQHVRKPQPIAGLRGRRVIHVA 3398
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ AG+ Y+WG N++GQ G G+ +P ++ D+ + V
Sbjct: 3399 VGALHCLAVTDAGQV--------YAWGDNDHGQQGSGNTFVNKKPALV--IGLDAVF-VN 3447
Query: 124 EVTCGSFHT 132
V CGS H+
Sbjct: 3448 RVACGSSHS 3456
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 75/142 (52%), Gaps = 12/142 (8%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G GE+ +LGHG T + VP ++ L + V +V CG +++ ++ +G++++WG +
Sbjct: 642 YSWGNGEDHRLGHGDTHARAVPTKITLLDRCVK--AVFCGCSYSAAITCSGNLYTWG--R 697
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
G A L + D P ++ H + D V + G AH++ +T +G+ +++W
Sbjct: 698 GT----YARLGHGNSDDQPLPTVVMALTEH--EIID-VALGSGDAHSLCLTSEGH-VYAW 749
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G LG G +P +V
Sbjct: 750 GDADYGKLGNGNLNGSMSPVLV 771
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 91/215 (42%), Gaps = 27/215 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V G S AI +G L+ WG + G + P+ V H ++ VA G
Sbjct: 675 AVFCGCSYSAAITCSGNLYTWGRG---TYARLGHGNSDDQPLPTVVMALTEHEIIDVALG 731
Query: 66 S--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
S H + L S G Y +WG + G+LG G+ + P ++E+ + V
Sbjct: 732 SGDAHSLCLTSEGHVY--------AWGDADYGKLGNGNLNGSMSPVLVESLPK-----VQ 778
Query: 124 EVTCGS-FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
V G+ F AL T + L S LG QL + Q VP + L Q+
Sbjct: 779 RVFAGAQFSMALTT-----DGQLYSWGKASCLGH--QLVERSAQWCSVPRLISGL-QHKR 830
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNA 217
+V V G+ H +SS G+V+ WG +CP++
Sbjct: 831 IVDVAVGVAHCLALSSCGEVFGWGRNDSQQICPSS 865
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 32/210 (15%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y WG N+ GQLG G SR++ P E + P ++ G +T P+ L
Sbjct: 4239 YGWGHNHRGQLG-GLEGSRIKTPTPCEALSLLRP---VQLAGGEQSLFAVT----PDGKL 4290
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVW 203
+ G G G+LG G S +P + L Q+V++ V+V+ G H +++ G+V+
Sbjct: 4291 ----FATGYGSGGRLGVGGADSWAIPTLLGSL-QHVFVKKVAVNSGGKHCLALTTEGEVY 4345
Query: 204 SWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+WG E G LG S R + + ++ + ++ +ACG+AH+ +T
Sbjct: 4346 AWGEGEDGKLGHGNRMSYDRPKLVEHLNGMNVA-------------DIACGSAHSAAITA 4392
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ L +WG+GR G LG G + D P +V
Sbjct: 4393 SGHVL-TWGKGRYGRLGHGDSEDQLRPQLV 4421
>gi|156120637|ref|NP_001095465.1| E3 ISG15--protein ligase HERC5 [Bos taurus]
gi|151555709|gb|AAI49082.1| HERC5 protein [Bos taurus]
Length = 958
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 96/204 (47%), Gaps = 23/204 (11%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G SLA+ G L+ WG D G S+ TP V + G +V+++
Sbjct: 149 IIQITCGDYHSLALSKGGELFAWGQN--LDGQLGVGRIFASTSTPEIVENLSGVPLVQIS 206
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G H +AL +G YSWG N+ GQLGLG ++ P IE + V
Sbjct: 207 AGEAHSMALSMSGNV--------YSWGRNDCGQLGLGHTYNKESPSCIEALDDQK---VE 255
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
+ CG HTALLT + +TFG G+ GQLGH +TQ+ L P V L +
Sbjct: 256 FLACGGCHTALLTK--------SGLVFTFGDGKYGQLGHNSTQNELRPRLVTGLVGN-RV 306
Query: 184 VSVDCGLFHT-SVVSSAGDVWSWG 206
+ CG HT + VS G V+S+G
Sbjct: 307 TQIACGRQHTLAYVSDTGKVFSFG 330
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 34/233 (14%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRLRPKIIETFNQ 116
++++ CG H +AL GE ++WG N +GQLG+G S P+I+E
Sbjct: 148 NIIQITCGDYHSLALSKGGE--------LFAWGQNLDGQLGVGRIFASTSTPEIVENL-- 197
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S + +++ G H+ L+ + +++G + GQLG G T + P ++
Sbjct: 198 -SGVPLVQISAGEAHSMALS--------MSGNVYSWGRNDCGQLGLGHTYNKESPSCIEA 248
Query: 177 LP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q V ++ CG HT++++ +G V+++G K L N + + P L++G
Sbjct: 249 LDDQKVEFLA--CGGCHTALLTKSGLVFTFGDGK------YGQLGHNSTQNELRPRLVTG 300
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ Q+ACG HT+ D K++S+G G+ G LG G T + P
Sbjct: 301 LVGN-----RVTQIACGRQHTLAYVSDTGKVFSFGSGKEGQLGNGGTRNQLIP 348
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 19/113 (16%)
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNGP 238
++ + CG +H+ +S G++++WG + G+G AS + E + +S + +
Sbjct: 149 IIQITCGDYHSLALSKGGELFAWGQNLDGQLGVGRI-FASTSTPEIVENLSGVPL----- 202
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
VQ++ G AH++ ++ G ++SWGR G LG G T + +P+ +
Sbjct: 203 --------VQISAGEAHSMALSMSG-NVYSWGRNDCGQLGLGHTYNKESPSCI 246
>gi|142942429|gb|ABO93003.1| putative regulator of chromosome condensation RCC1 [Solanum
tuberosum]
Length = 951
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 130/294 (44%), Gaps = 37/294 (12%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDF-HGHTVVKVACG 65
+ G S A+ ++G L+ WG+ S G S S + P V G V V+CG
Sbjct: 365 IACGEYHSCAVTSSGDLYTWGD-GAKSSGLLGHRSEASHWIPKKVCGLMEGLRVSHVSCG 423
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG + ++G G LG GDR + P+ +ETFN +V
Sbjct: 424 PWHTALITSAGRLF--------TFGDGTFGALGHGDRSGCITPREVETFNG---LKTLKV 472
Query: 126 TCGSFHTALLTH-----RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
CG +HTA + RP+D +T+G G+ G+LGHG + L P+ + L
Sbjct: 473 ACGVWHTAAVVELMSGLDSRPSDAPSGTLFTWGDGDKGKLGHGDNKPRLAPQCITALVDK 532
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGME-KGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ V C T +++ G V++ G G CP A + +SPI +
Sbjct: 533 SF-SEVACSYAMTVALTTTGRVYTMGSNVYGQLGCPLA--------NGMSPICVED---- 579
Query: 240 GPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D +++CG+ H ++T ++++WG+G +G LG G + P +V
Sbjct: 580 --YLVDSTVEEISCGSHHVAVLTSR-TEVYTWGKGENGQLGHGDCENKCTPTLV 630
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 108/246 (43%), Gaps = 42/246 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V ++CG+ H + + GE + SWG G+LG G PK+I+ F
Sbjct: 310 VQNISCGNRHAMLVTKQGEAF--------SWGEEAGGRLGHGAETDVSHPKLIKNFKG-- 359
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG +H+ +T D+ W G +G LGH + S +P++V L
Sbjct: 360 -MNVELIACGEYHSCAVTS---SGDLYT---WGDGAKSSGLLGHRSEASHWIPKKVCGLM 412
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI-SGNG 237
+ + + V CG +HT++++SAG ++++G + G +L + I+P + + NG
Sbjct: 413 EGLRVSHVSCGPWHTALITSAGRLFTFG-DGTFG-----ALGHGDRSGCITPREVETFNG 466
Query: 238 PHGPKFQDPVQVACGAAHTVLVTD------------DGYKLWSWGRGRSGVLGTGKTIDF 285
++VACG HT V + L++WG G G LG G
Sbjct: 467 ------LKTLKVACGVWHTAAVVELMSGLDSRPSDAPSGTLFTWGDGDKGKLGHGDNKPR 520
Query: 286 FAPAIV 291
AP +
Sbjct: 521 LAPQCI 526
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Query: 13 MSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFH-GHTVVKVACGSEHVVA 71
M++A+ G ++ G+ + + G L + +P V D+ TV +++CGS HV
Sbjct: 543 MTVALTTTGRVYTMGS----NVYGQLGCPLANGMSPICVEDYLVDSTVEEISCGSHHVAV 598
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGS-F 130
L S E Y +WG NGQLG GD E++ P +++ V + CGS F
Sbjct: 599 LTSRTEVY--------TWGKGENGQLGHGDCENKCTPTLVDILRDKQ---VKRIVCGSNF 647
Query: 131 HTALLTH 137
A+ H
Sbjct: 648 SAAICVH 654
>gi|296486689|tpg|DAA28802.1| TPA: hect domain and RLD 5 [Bos taurus]
Length = 963
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 96/204 (47%), Gaps = 23/204 (11%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G SLA+ G L+ WG D G S+ TP V + G +V+++
Sbjct: 154 IIQITCGDYHSLALSKGGELFAWGQN--LDGQLGVGRIFASTSTPEIVENLSGVPLVQIS 211
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G H +AL +G YSWG N+ GQLGLG ++ P IE + V
Sbjct: 212 AGEAHSMALSMSGNV--------YSWGRNDCGQLGLGHTYNKESPSCIEALDDQK---VE 260
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
+ CG HTALLT + +TFG G+ GQLGH +TQ+ L P V L +
Sbjct: 261 FLACGGCHTALLTK--------SGLVFTFGDGKYGQLGHNSTQNELRPRLVTGLVGN-RV 311
Query: 184 VSVDCGLFHT-SVVSSAGDVWSWG 206
+ CG HT + VS G V+S+G
Sbjct: 312 TQIACGRQHTLAYVSDTGKVFSFG 335
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 34/233 (14%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRLRPKIIETFNQ 116
++++ CG H +AL GE ++WG N +GQLG+G S P+I+E
Sbjct: 153 NIIQITCGDYHSLALSKGGE--------LFAWGQNLDGQLGVGRIFASTSTPEIVENL-- 202
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S + +++ G H+ L+ + +++G + GQLG G T + P ++
Sbjct: 203 -SGVPLVQISAGEAHSMALS--------MSGNVYSWGRNDCGQLGLGHTYNKESPSCIEA 253
Query: 177 LP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q V ++ CG HT++++ +G V+++G K L N + + P L++G
Sbjct: 254 LDDQKVEFLA--CGGCHTALLTKSGLVFTFGDGK------YGQLGHNSTQNELRPRLVTG 305
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ Q+ACG HT+ D K++S+G G+ G LG G T + P
Sbjct: 306 LVGN-----RVTQIACGRQHTLAYVSDTGKVFSFGSGKEGQLGNGGTRNQLIP 353
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 19/113 (16%)
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNGP 238
++ + CG +H+ +S G++++WG + G+G AS + E + +S + +
Sbjct: 154 IIQITCGDYHSLALSKGGELFAWGQNLDGQLGVGRI-FASTSTPEIVENLSGVPL----- 207
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
VQ++ G AH++ ++ G ++SWGR G LG G T + +P+ +
Sbjct: 208 --------VQISAGEAHSMALSMSG-NVYSWGRNDCGQLGLGHTYNKESPSCI 251
>gi|291221016|ref|XP_002730519.1| PREDICTED: predicted protein-like, partial [Saccoglossus
kowalevskii]
Length = 353
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 129/279 (46%), Gaps = 41/279 (14%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
+ G S I +G L+ +G+ D G + + P V V VACG
Sbjct: 41 ISCGDEHSAIITESGRLYTFGS---NDWGQLGLGHMKPTTKPGCVKSLKQEGVNLVACGR 97
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE-V 125
H + AG Y S+GA ++GQLG GD + P++I + P Y+ +
Sbjct: 98 SHTIVCTKAGRLY--------SFGAGSDGQLGTGDAQCATSPQLI-----NLPEQKYKLL 144
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
+ G+ H+A LT + + +G G GQLG G T S P KEL + +
Sbjct: 145 SAGTDHSAALT--------TDGTLYMWGSGSEGQLGLGNTDSVETP---KELKFHSSVSW 193
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
V CG +HT++V+ G ++++G EK G LT ++ D +P H +
Sbjct: 194 VSCGYYHTAIVTDDGKLYTFG-EKEFG---KLGLTEDQLEDTTTP-------KHVESITE 242
Query: 246 PVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
++ VACG AHT +++D G L+++G G G LG G ++
Sbjct: 243 KIKLVACGGAHTAVISDVG-NLYTFGDGMHGQLGNGPSL 280
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 117/236 (49%), Gaps = 42/236 (17%)
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
++ G++H AL + G Y WG+ + GQLGLG+ +S PK ++ F+ W
Sbjct: 144 LSAGTDHSAALTTDG--------TLYMWGSGSEGQLGLGNTDSVETPKELK-FHSSVSW- 193
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ--SALVPEQVKELPQ 179
V+CG +HTA++T + +TFG E G+LG Q P+ V+ + +
Sbjct: 194 ---VSCGYYHTAIVTD--------DGKLYTFGEKEFGKLGLTEDQLEDTTTPKHVESITE 242
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ LV+ CG HT+V+S G+++++ GM LG P SL + P ++
Sbjct: 243 KIKLVA--CGGAHTAVISDVGNLYTFGDGMHGQLGNGP--SLLQLSL-----PQKVARLS 293
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT--IDFFAPAIV 291
H K+ V+CG HT ++T+ G ++++G GR G LG + + F P V
Sbjct: 294 EHKCKY-----VSCGDNHTAVITEKG-AMYTFGDGRHGKLGISEEDFCNIFKPCKV 343
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 16/113 (14%)
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ + CG H+++++ +G ++++G LGL T+ P + G
Sbjct: 39 MHISCGDEHSAIITESGRLYTFGSNDWGQLGLGHMKPTTK--------PGCVKSLKQEGV 90
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
VACG +HT++ T G +L+S+G G G LGTG +P ++ P
Sbjct: 91 NL-----VACGRSHTIVCTKAG-RLYSFGAGSDGQLGTGDAQCATSPQLINLP 137
>gi|442317911|ref|YP_007357932.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
gi|441485553|gb|AGC42248.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
Length = 1451
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 122/291 (41%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + +V AG +LA+ + G +W WG+ +SS + G + PSPV V
Sbjct: 248 LQGVSAVTAGLYHALALRSDGTVWAWGS----NSSGQMGDGTWTD-RPSPV------QVT 296
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A VA AG +D ++WG N+ GQLG+G P +
Sbjct: 297 SIA--RAKAVAAQDAGSLVLLDDGGVFAWGLNSQGQLGIGTTADSPLPVRVRGLG----- 349
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
AV + G+ H +L + WT+G G GQLGHG+++ L PE V L
Sbjct: 350 AVTSLAAGTQHAVVL--------RADGTLWTWGHGATGQLGHGSSERMLSPEVVTRLSN- 400
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ SV G FH+ S G VW+WG N L + P+ +
Sbjct: 401 --VASVASGSFHSVAALSDGSVWTWGRNT------NGQLGDGTTTERHLPVRV------- 445
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P V V+ H+ + DG +W WGR G +G G T D +PA V
Sbjct: 446 PGLSGVVSVSASGHHSFALRSDG-TVWGWGRNAQGQMGDGTTKDRASPARV 495
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 96/233 (41%), Gaps = 38/233 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +A G++H V L + D ++WG GQLG G E L P+++ +
Sbjct: 351 VTSLAAGTQHAVVLRA--------DGTLWTWGHGATGQLGHGSSERMLSPEVVTRLSN-- 400
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V V GSFH+ + + WT+G NGQLG GTT +P +V P
Sbjct: 401 ---VASVASGSFHSVAA--------LSDGSVWTWGRNTNGQLGDGTTTERHLPVRV---P 446
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+VSV H+ + S G VW WG + D SP + G
Sbjct: 447 GLSGVVSVSASGHHSFALRSDGTVWGWGRNA------QGQMGDGTTKDRASPARVEG--- 497
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A G +H V + DG +W+WG +G LG G T D AP V
Sbjct: 498 ----LSSVKALASGGSHMVALRTDG-TVWTWGYNGAGQLGDGTTTDRRAPVQV 545
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 121/294 (41%), Gaps = 51/294 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ + +V +LA+ + G +W WG+ L D S ++ PV
Sbjct: 1153 LGAMVAVAPAARHTLALRSDGTVWAWGDNTFGQLGDGS--------NTRRTLPVQVVGLE 1204
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V +A GS H +A+ ED ++WG N GQLG G ++R P + +
Sbjct: 1205 KVTAIAAGSYHSLAVR--------EDGTVWAWGYNVFGQLGDGTMDARAVPTRMLGLD-- 1254
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V G +H+ +L + W G +GQLG GT + L P QV EL
Sbjct: 1255 ---GAVAVAGGEYHSLML--------RFDGTLWATGNNSHGQLGEGTFTNRLSPFQVVEL 1303
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
Q + +V G +H+ + G VW+WG G G + ++T +P+
Sbjct: 1304 DQ---VRTVRAGGYHSVALREDGTVWTWG-HNGQGQLGDGTVTTRRV---PAPV------ 1350
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P V G +HT V G + W+WGR G LGTG + D P +V
Sbjct: 1351 ---PGLTAIASVGAGTSHTFAV---GSETWAWGRNSHGQLGTGDSSDRLEPTLV 1398
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 113/291 (38%), Gaps = 44/291 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT-VV 60
S V AG SL + AG +W WG + S + G V SF G T V
Sbjct: 48 SATSKVAAGAQHSLYVTQAGTVWAWGG----NGSGQLGTGSV-SFQRVVAQQVPGLTDVT 102
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +AL + D ++WG NN GQ+G G R P+ + +
Sbjct: 103 SIAAGDAHSLALRA--------DRTVWTWGGNNAGQVGDGTNVDRPTPQKVPGLSD---- 150
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V G FH+ L + W +G GQLG G +Q P QV L
Sbjct: 151 -VVAVAAGEFHSLAL--------RADGTVWAWGSNFYGQLGRGHSQPGPSPAQVVGLTGV 201
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
V L G + V S G VW+WG L + R ++P +S
Sbjct: 202 VALA---AGFDFSLAVRSDGTVWAWGANGSGQLGDGTYIQR------LAPTQVS------ 246
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ Q V G H + + DG +W+WG SG +G G D +P V
Sbjct: 247 -QLQGVSAVTAGLYHALALRSDG-TVWAWGSNSSGQMGDGTWTDRPSPVQV 295
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 116/291 (39%), Gaps = 49/291 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ Q + AG SL + G + WG + L D ST + SPV +
Sbjct: 748 LGQGRRLSAGRAHSLLVRADGTVLAWGQNTSGQLGDGST--------THRASPVLARNLP 799
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+ G +H + L D +SWG N+ GQLG G SR P +E
Sbjct: 800 CARAASAGRQHSLVLAC--------DGTVWSWGGNSQGQLGDGGVTSRAYPAKVEGL--- 848
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
W V V G + +L + WT+G +GQLG GT P +VK L
Sbjct: 849 --WGVVAVLAGGDSSMVL--------RADGTVWTWGANGSGQLGDGTLGDRASPLEVKGL 898
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
V G H VVS G VW+WG G G + + T + SP+ ++G
Sbjct: 899 AGIATGV---MGEAHALVVSQDGTVWAWG-ANGRGQLGDGTTTSSA-----SPVRVAG-- 947
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ V+ G A+++ V DG +WSWG SG LG G + P
Sbjct: 948 -----LSAAMNVSVGQAYSLAVLPDG-TVWSWGANDSGQLGDGTNVARTTP 992
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 118/294 (40%), Gaps = 49/294 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ + S+ AG ++ + G LW WG+ L S+E +P V
Sbjct: 348 LGAVTSLAAGTQHAVVLRADGTLWTWGHGATGQLGHGSSE------RMLSPEVVTRLS-- 399
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V VA GS H VA +S G ++WG N NGQLG G R P + +
Sbjct: 400 NVASVASGSFHSVAALSDGS--------VWTWGRNTNGQLGDGTTTERHLPVRVPGLS-- 449
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V V+ H+ L + W +G GQ+G GTT+ P +V+ L
Sbjct: 450 ---GVVSVSASGHHSFALRS--------DGTVWGWGRNAQGQMGDGTTKDRASPARVEGL 498
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
L S G H + + G VW+WG G G + + T D +P+ ++G
Sbjct: 499 SSVKALAS---GGSHMVALRTDGTVWTWGY-NGAGQLGDGTTT-----DRRAPVQVTG-- 547
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
VA GA ++ + DG +W+WG G G LG G + +P V
Sbjct: 548 -----LSGVTSVAAGAYFSLALRTDG-TVWAWGDGFEGQLGDGAGVQRASPVQV 595
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 119/289 (41%), Gaps = 49/289 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S + SV +G S+A + G++W WG N L D +T P V G
Sbjct: 398 LSNVASVASGSFHSVAALSDGSVWTWGRNTNGQLGDGTT------TERHLPVRVPGLSG- 450
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV V+ H AL S D + WG N GQ+G G + R P +E +
Sbjct: 451 -VVSVSASGHHSFALRS--------DGTVWGWGRNAQGQMGDGTTKDRASPARVEGLS-- 499
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+V + G H L + WT+G GQLG GTT P QV L
Sbjct: 500 ---SVKALASGGSHMVAL--------RTDGTVWTWGYNGAGQLGDGTTTDRRAPVQVTGL 548
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ SV G + + + + G VW+WG L A + R SP+ ++G
Sbjct: 549 SG---VTSVAAGAYFSLALRTDGTVWAWGDGFEGQLGDGAGVQR------ASPVQVTG-- 597
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFF 286
V++A GAAH + V DDG +W+WG G +G G D F
Sbjct: 598 -----LTRVVKLAAGAAHGLAVRDDG-TVWAWGDNTEGQMGDGSWSDRF 640
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 130/328 (39%), Gaps = 67/328 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + S+ AG SLA+ +W WG ++ G + V TP V VV
Sbjct: 98 LTDVTSIAAGDAHSLALRADRTVWTWGGN---NAGQVGDGTNVDRPTPQKVPGLS--DVV 152
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H +AL + D ++WG+N GQLG G + P +
Sbjct: 153 AVAAGEFHSLALRA--------DGTVWAWGSNFYGQLGRGHSQPGPSPAQVVGLT----- 199
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G F +L + W +G +GQLG GT L P QV +L
Sbjct: 200 GVVALAAG-FDFSLAVRS-------DGTVWAWGANGSGQLGDGTYIQRLAPTQVSQLQG- 250
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPN-------ASLTRNE---AGD 226
+ +V GL+H + S G VW+WG + G G + S+ R + A D
Sbjct: 251 --VSAVTAGLYHALALRSDGTVWAWGSNSSGQMGDGTWTDRPSPVQVTSIARAKAVAAQD 308
Query: 227 AISPILISGNGPH------------GPKFQDPVQV-----------ACGAAHTVLVTDDG 263
A S +L+ G G P+ V A G H V++ DG
Sbjct: 309 AGSLVLLDDGGVFAWGLNSQGQLGIGTTADSPLPVRVRGLGAVTSLAAGTQHAVVLRADG 368
Query: 264 YKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
LW+WG G +G LG G + +P +V
Sbjct: 369 -TLWTWGHGATGQLGHGSSERMLSPEVV 395
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 127/334 (38%), Gaps = 83/334 (24%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S +V G SLA+ G +W WG DS G + V+ TP PV D V
Sbjct: 948 LSAAMNVSVGQAYSLAVLPDGTVWSWGAN---DSGQLGDGTNVARTTPKPVQDLA--DVK 1002
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V G+ HVVA+ D + WGAN GQ+G G R RP +E
Sbjct: 1003 AVTAGAHHVVAVR--------HDGTVWGWGANAFGQVGDGTHFWRFRPVRVEGLLN---- 1050
Query: 121 AVYEVTCGSFHT-ALLT------------------------------------------- 136
E + G H+ ALL
Sbjct: 1051 -AVETSAGEQHSLALLGDERALSWGSHEYGQLGDAESGPSLEPVGVKLPSSKVLVPAVSV 1109
Query: 137 ---HRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
H+ + + T+G +GQLG GTT+S P V L +V+V HT
Sbjct: 1110 SAWHQHAAALLADGTVQTWGGNADGQLGDGTTESRATPITVAGLGA---MVAVAPAARHT 1166
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ S G VW+WG + G + S TR P+ + G + +A G+
Sbjct: 1167 LALRSDGTVWAWG-DNTFGQLGDGSNTRRTL-----PVQVVG-------LEKVTAIAAGS 1213
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
H++ V +DG +W+WG G LG G T+D A
Sbjct: 1214 YHSLAVREDG-TVWAWGYNVFGQLGDG-TMDARA 1245
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 113/291 (38%), Gaps = 43/291 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ +V AGG S+ + G +W WG S G +L +P V G +
Sbjct: 851 VVAVLAGGDSSMVLRADGTVWTWGAN---GSGQLGDGTLGDRASPLEVKGLAG--IATGV 905
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G H ALV + +D ++WGAN GQLG G S P + + A
Sbjct: 906 MGEAH--ALVVS------QDGTVWAWGANGRGQLGDGTTTSSASPVRVAGLS-----AAM 952
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
V+ G ++ + + + W++G ++GQLG GT + P+ V++L +
Sbjct: 953 NVSVGQAYSLAV--------LPDGTVWSWGANDSGQLGDGTNVARTTPKPVQDLAD---V 1001
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+V G H V G VW WG + R P+ + G
Sbjct: 1002 KAVTAGAHHVVAVRHDGTVWGWGANAFGQVGDGTHFWR------FRPVRVEG-------L 1048
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
+ V+ + G H++ + D L SWG G LG ++ P V P
Sbjct: 1049 LNAVETSAGEQHSLALLGDERAL-SWGSHEYGQLGDAESGPSLEPVGVKLP 1098
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 128/340 (37%), Gaps = 84/340 (24%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ I + G +L + G +W WG L D +T SS +P V
Sbjct: 898 LAGIATGVMGEAHALVVSQDGTVWAWGANGRGQLGDGTT------TSSASPVRVAGLS-- 949
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+ V+ G + +A++ D +SWGAN++GQLG G +R PK ++
Sbjct: 950 AAMNVSVGQAYSLAVL--------PDGTVWSWGANDSGQLGDGTNVARTTPKPVQDLAD- 1000
Query: 118 SPWAVYEVTCGSFHTALLTH----------------------RKRP---NDMLESM---- 148
V VT G+ H + H R RP +L ++
Sbjct: 1001 ----VKAVTAGAHHVVAVRHDGTVWGWGANAFGQVGDGTHFWRFRPVRVEGLLNAVETSA 1056
Query: 149 -------------CWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL---VSVDCGLFH 192
++G E GQLG + +L P VK LP L VSV H
Sbjct: 1057 GEQHSLALLGDERALSWGSHEYGQLGDAESGPSLEPVGVK-LPSSKVLVPAVSVSAWHQH 1115
Query: 193 TSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACG 252
+ + + G V +WG L + +R +PI ++G G V VA
Sbjct: 1116 AAALLADGTVQTWGGNADGQLGDGTTESR------ATPITVAGLGAM-------VAVAPA 1162
Query: 253 AAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
A HT+ + DG +W+WG G LG G P V+
Sbjct: 1163 ARHTLALRSDG-TVWAWGDNTFGQLGDGSNTRRTLPVQVV 1201
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ Q+ +V+AGG S+A+ G +W WG+ G ++ + P+PV +
Sbjct: 1303 LDQVRTVRAGGYHSVALREDGTVWTWGHN---GQGQLGDGTVTTRRVPAPVPGLT--AIA 1357
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
V G+ H A+ S ET+ +WG N++GQLG GD RL P +++ +
Sbjct: 1358 SVGAGTSHTFAVGS--ETW--------AWGRNSHGQLGTGDSSDRLEPTLVKGLH 1402
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 104/294 (35%), Gaps = 51/294 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + SV AG SLA+ G +W WG+ G SPV G T V
Sbjct: 548 LSGVTSVAAGAYFSLALRTDGTVWAWGDGFEGQLGDGAGVQRA-----SPV-QVTGLTRV 601
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V +D ++WG N GQ+G G R R +
Sbjct: 602 VKLAAGAAHGLAVR-------DDGTVWAWGDNTEGQMGDGSWSDRFRAVQVYGLT----- 649
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V G +H+ L + +G GQ G G +V V L
Sbjct: 650 GVSSVVGGLYHSMALAQ--------DGTLRAWGGNAYGQFGDGGVTPRVVAGAVPGLSGI 701
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGN 236
L H V G + +WG + GLG +SL P+ + G
Sbjct: 702 KLL---GASYLHVLAVREDGMLLTWGYNRFGQLGLGAAGWSSL----------PVQVRGL 748
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
G +++ G AH++LV DG L +WG+ SG LG G T +P +
Sbjct: 749 G-------QGRRLSAGRAHSLLVRADGTVL-AWGQNTSGQLGDGSTTHRASPVL 794
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 106/282 (37%), Gaps = 51/282 (18%)
Query: 17 IDNAGALWMWGNCPLPDSSTEGGF---SLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+ + G +W WG+ +TEG S F V+ G V V G H +AL
Sbjct: 614 VRDDGTVWAWGD------NTEGQMGDGSWSDRFRAVQVYGLTG--VSSVVGGLYHSMALA 665
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+D +WG N GQ G G R+ + + G+ +
Sbjct: 666 --------QDGTLRAWGGNAYGQFGDGGVTPRVVAGAVPGLSGIK-------LLGASYLH 710
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
+L R+ + M T+G GQLG G + +P QV+ L Q L G H+
Sbjct: 711 VLAVRE------DGMLLTWGYNRFGQLGLGAAGWSSLPVQVRGLGQGRRL---SAGRAHS 761
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+V + G V +WG L ++ R SP+L + G
Sbjct: 762 LLVRADGTVLAWGQNTSGQLGDGSTTHR------ASPVLAR-------NLPCARAASAGR 808
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV--LW 293
H++++ DG +WSWG G LG G PA V LW
Sbjct: 809 QHSLVLACDG-TVWSWGGNSQGQLGDGGVTSRAYPAKVEGLW 849
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 67/173 (38%), Gaps = 28/173 (16%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
+V G SL + G LW GN EG F+ + +P V + V V
Sbjct: 1257 VAVAGGEYHSLMLRFDGTLWATGNNSHGQLG-EGTFT--NRLSPFQVVELD--QVRTVRA 1311
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G H VAL ED ++WG N GQLG G +R P + A+
Sbjct: 1312 GGYHSVALR--------EDGTVWTWGHNGQGQLGDGTVTTRRVPAPVPGLT-----AIAS 1358
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V G+ HT + S W +G +GQLG G + L P VK L
Sbjct: 1359 VGAGTSHTF----------AVGSETWAWGRNSHGQLGTGDSSDRLEPTLVKGL 1401
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 24/172 (13%)
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
A +V G+ H+ +T W +G +GQLG G+ V Q ++P
Sbjct: 49 ATSKVAAGAQHSLYVTQ--------AGTVWAWGGNGSGQLGTGSVSFQRVVAQ--QVPGL 98
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ S+ G H+ + + VW+WG + ++ R +P +
Sbjct: 99 TDVTSIAAGDAHSLALRADRTVWTWGGNNAGQVGDGTNVDRP------TPQKV------- 145
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
P D V VA G H++ + DG +W+WG G LG G + +PA V+
Sbjct: 146 PGLSDVVAVAAGEFHSLALRADG-TVWAWGSNFYGQLGRGHSQPGPSPAQVV 196
>gi|332819950|ref|XP_003310459.1| PREDICTED: E3 ISG15--protein ligase HERC5 [Pan troglodytes]
Length = 957
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 88/169 (52%), Gaps = 21/169 (12%)
Query: 39 GFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG 98
G S+ TP V G + +++ G H +AL +G Y SWG N GQLG
Sbjct: 106 GRKFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGNIY--------SWGKNEFGQLG 157
Query: 99 LGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENG 158
LG ES+ P +IE + V V CG H+ALLT + + +TFG G++G
Sbjct: 158 LGHTESKDYPSLIEGLDNQK---VEFVACGGSHSALLTQ--------DGLLFTFGAGKHG 206
Query: 159 QLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT-SVVSSAGDVWSWG 206
QLGH +TQ+ L P V EL +Y + + CG +HT + VS G V+S+G
Sbjct: 207 QLGHNSTQNELRPCLVAELVEY-RVTQIACGRWHTLAYVSDLGKVFSFG 254
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 101/207 (48%), Gaps = 26/207 (12%)
Query: 87 YSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
++WG N +GQLG+G + S P+I+E P A +++ G H+ L+ +
Sbjct: 93 FAWGQNLHGQLGVGRKFPSTTTPQIVEHL-AGVPLA--QISAGEAHSMALS--------M 141
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWS 204
+++G E GQLG G T+S P ++ L Q V V+ CG H+++++ G +++
Sbjct: 142 SGNIYSWGKNEFGQLGLGHTESKDYPSLIEGLDNQKVEFVA--CGGSHSALLTQDGLLFT 199
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
+G K + L N + + P L++ + Q+ACG HT+ D
Sbjct: 200 FGAGK------HGQLGHNSTQNELRPCLVAELVEY-----RVTQIACGRWHTLAYVSDLG 248
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K++S+G G+ G LG G T D P V
Sbjct: 249 KVFSFGSGKDGQLGNGGTRDQLMPLPV 275
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 21/172 (12%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ + AG S+A+ +G ++ WG + G S PS + V VA
Sbjct: 126 LAQISAGEAHSMALSMSGNIYSWGK---NEFGQLGLGHTESKDYPSLIEGLDNQKVEFVA 182
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H L G + +++GA +GQLG ++ LRP ++ + + V
Sbjct: 183 CGGSHSALLTQDG--------LLFTFGAGKHGQLGHNSTQNELRPCLVAELVE---YRVT 231
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG +HT +D+ ++FG G++GQLG+G T+ L+P VK
Sbjct: 232 QIACGRWHTLAYV-----SDL--GKVFSFGSGKDGQLGNGGTRDQLMPLPVK 276
>gi|297807279|ref|XP_002871523.1| ran GTPase binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297317360|gb|EFH47782.1| ran GTPase binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 1075
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 112/244 (45%), Gaps = 41/244 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +ACG +H V + GE++ SWG + G+LG G + +PK+I+ N +
Sbjct: 310 VQNIACGGQHAVLVTKQGESF--------SWGEESEGRLGHGVDSNIQQPKLIDALNTTN 361
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ V CG FH+ +T L +T+G G+ G LGHG S VP++V L
Sbjct: 362 ---IELVACGEFHSCAVT--------LSGDLYTWGKGDFGVLGHGNEVSHWVPKRVNFLL 410
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +++ S+ CG +HT+VV+SAG ++++G + G+ L + P +
Sbjct: 411 EGIHVSSIACGPYHTAVVTSAGQLFTFG-DGTFGV-----LGHGDKKSVFIPREVD---- 460
Query: 239 HGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGKTIDFFA 287
K V+ ACG HT V + KL++WG G G LG G
Sbjct: 461 -SLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGNKEPKLV 519
Query: 288 PAIV 291
P V
Sbjct: 520 PTCV 523
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 127/292 (43%), Gaps = 36/292 (12%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G S A+ +G L+ WG D G + VS + P V + G V +ACG
Sbjct: 365 VACGEFHSCAVTLSGDLYTWGKG---DFGVLGHGNEVSHWVPKRVNFLLEGIHVSSIACG 421
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ +++G G LG GD++S P+ +++
Sbjct: 422 PYHTAVVTSAGQ--------LFTFGDGTFGVLGHGDKKSVFIPREVDSLKG---LRTVRA 470
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ G+LGHG + LVP V L +
Sbjct: 471 ACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGNKEPKLVPTCVAALVEPN 530
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG T ++++G V++ G P N D P + G
Sbjct: 531 F-CQVACGHSLTVALTTSGHVYTMG-------SPVYGQLGNSHADGKLPNRVEG------ 576
Query: 242 KFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K ++ACGA H ++T ++++WG+G +G LG G D +P +V
Sbjct: 577 KLHKSFVEEIACGAYHVAVLTSR-TEVYTWGKGSNGRLGHGDVDDRNSPTLV 627
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 117/296 (39%), Gaps = 51/296 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
+ S+ G + + +AG L+ +G +G F ++ S F P V G
Sbjct: 414 HVSSIACGPYHTAVVTSAGQLFTFG---------DGTFGVLGHGDKKSVFIPREVDSLKG 464
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLV-------CYSWGANNNGQLGLGDRESRLRPK 109
V+ ACG H A+V E G ++WG + G+LG G++E +L P
Sbjct: 465 LRTVRAACGVWHTAAVV---EVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGNKEPKLVPT 521
Query: 110 IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
+ + + +V CG T LT +T G GQLG+ L
Sbjct: 522 CVAALVEPN---FCQVACGHSLTVALT--------TSGHVYTMGSPVYGQLGNSHADGKL 570
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
P +V+ ++ + CG +H +V++S +V++WG KG N L + D S
Sbjct: 571 -PNRVEGKLHKSFVEEIACGAYHVAVLTSRTEVYTWG--KG----SNGRLGHGDVDDRNS 623
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
P L+ K + +ACG T V W+ G +S G + F
Sbjct: 624 PTLV-----ESLKDKQVKSIACGTNFTAAVC---IHRWASGMDQSMCSGCRQPFSF 671
>gi|281361147|ref|NP_608388.2| HERC2 [Drosophila melanogaster]
gi|91206848|sp|Q9VR91.3|HERC2_DROME RecName: Full=Probable E3 ubiquitin-protein ligase HERC2; AltName:
Full=HECT domain and RCC1-like domain-containing protein
2
gi|272506184|gb|AAF50913.3| HERC2 [Drosophila melanogaster]
Length = 4912
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 137/291 (47%), Gaps = 41/291 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + + P V + VACG
Sbjct: 3077 AVHSGGKHALALTLDGKVFSWGEG---EDGKLGHGNRTTLDKPRLVEALRAKKIRDVACG 3133
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S GE Y +WG G+LG GD ++L+PK++ + V +V
Sbjct: 3134 SSHSAAISSQGELY--------TWGLGEYGRLGHGDNTTQLKPKLVTAL---AGRRVVQV 3182
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L + + +++G G+ G+LG G ++ + P +++ L + +V
Sbjct: 3183 ACGSRDAQTLALTE------DGAVFSWGDGDFGKLGRGGSEGSDTPHEIERL-SGIGVVQ 3235
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ AG+VW+WG KG LG + + + + PI G G
Sbjct: 3236 IECGAQFSLALTRAGEVWTWG--KGDYYRLGHGGDQHVRKPQ------PI----GGLRGR 3283
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ + VA GA H + VTD G ++++WG G G+G T PA+V+
Sbjct: 3284 RV---IHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGSGNTFVNKKPALVI 3330
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 130/290 (44%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ G ++ WG + G + +S P V +G +V +ACG
Sbjct: 4140 AVNSGGKHCLALTTEGEVYAWGEG---EDGKLGHGNRMSYDRPKLVEHLNGMSVADIACG 4196
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ ++G +WG G+LG GD E +LRPK++E + ++
Sbjct: 4197 SAHSAAITASGHVL--------TWGKGRYGRLGHGDSEDQLRPKLVEALLG---YRAIDI 4245
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + +P +++ L + +V
Sbjct: 4246 ACGSGDAQTLCITDDDN------VWSWGDGDYGKLGRGGSDGCKLPYKIESLAG-LGVVK 4298
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + R + A+ G
Sbjct: 4299 VECGSQFSVALTKSGAVYTWG--KGDFHRLGHGSVDHVRRPKKVAAL----------QGK 4346
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V +D G ++++WG G LG G P +V
Sbjct: 4347 KI---ISIATGSLHCVACSDSG-EVYTWGDNDEGQLGDGTVTAIQRPRLV 4392
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 106/233 (45%), Gaps = 32/233 (13%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V G +H +AL + GE Y +WG +G+LG G+R S RPK++E N S
Sbjct: 4139 VAVNSGGKHCLALTTEGEVY--------AWGEGEDGKLGHGNRMSYDRPKLVEHLNGMS- 4189
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V ++ CGS H+A +T T+G G G+LGHG ++ L P+ V+ L
Sbjct: 4190 --VADIACGSAHSAAIT--------ASGHVLTWGKGRYGRLGHGDSEDQLRPKLVEALLG 4239
Query: 180 YVYL-VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Y + ++ G T ++ +VWSWG + G L R + P I
Sbjct: 4240 YRAIDIACGSGDAQTLCITDDDNVWSWG-DGDYG-----KLGRGGSDGCKLPYKIESLAG 4293
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G V+V CG+ +V +T G +++WG+G LG G P V
Sbjct: 4294 LG-----VVKVECGSQFSVALTKSG-AVYTWGKGDFHRLGHGSVDHVRRPKKV 4340
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 89/204 (43%), Gaps = 21/204 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G S AI + G L+ WG L + G + P V G VV+V
Sbjct: 3126 KIRDVACGSSHSAAISSQGELYTWG---LGEYGRLGHGDNTTQLKPKLVTALAGRRVVQV 3182
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L ED +SWG + G+LG G E P IE S V
Sbjct: 3183 ACGSRDAQTLALT------EDGAVFSWGDGDFGKLGRGGSEGSDTPHEIERL---SGIGV 3233
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT R ++ WT+G G+ +LGHG Q P+ + L +
Sbjct: 3234 VQIECGAQFSLALT---RAGEV-----WTWGKGDYYRLGHGGDQHVRKPQPIGGL-RGRR 3284
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG 206
++ V G H V+ AG V++WG
Sbjct: 3285 VIHVAVGALHCLAVTDAGQVYAWG 3308
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 19/143 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G S+A+ +GA++ WG D G S+ P V G ++ +A
Sbjct: 4296 VVKVECGSQFSVALTKSGAVYTWGKG---DFHRLGHGSVDHVRRPKKVAALQGKKIISIA 4352
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H VA +GE Y +WG N+ GQLG G + RP+++ +
Sbjct: 4353 TGSLHCVACSDSGEVY--------TWGDNDEGQLGDGTVTAIQRPRLVAALQGKH---IV 4401
Query: 124 EVTCGSFH-----TALLTHRKRP 141
+VTCGS H T+ L+ R RP
Sbjct: 4402 KVTCGSAHTLALSTSQLSERLRP 4424
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 32/216 (14%)
Query: 82 EDLVC--YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
+DL C WG N+ QLG G + S+++ P +T ++ P + GS +++
Sbjct: 2982 QDLPCTVMVWGLNDKEQLG-GLKGSKVKVPTFSQTISRLRP---IHIAGGSKSLFIVSQ- 3036
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVDCGLFHTSVVS 197
+ + G G NG+LG G T + +P Q+ L QYV V+V G H ++
Sbjct: 3037 -------DGKVYACGEGTNGRLGLGVTHNVPLPHQLPVLRQYVVKKVAVHSGGKHALALT 3089
Query: 198 SAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
G V+SWG E G LG +L + +A+ K +D VACG++H
Sbjct: 3090 LDGKVFSWGEGEDGKLGHGNRTTLDKPRLVEAL----------RAKKIRD---VACGSSH 3136
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ ++ G +L++WG G G LG G P +V
Sbjct: 3137 SAAISSQG-ELYTWGLGEYGRLGHGDNTTQLKPKLV 3171
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 118/274 (43%), Gaps = 46/274 (16%)
Query: 1 MSQIC--SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
+ Q C SV G S AI G L WG + G + P+ V H
Sbjct: 665 LEQHCVQSVYCGCSYSAAITCGGNLLTWGRG---TYARLGHGNSDDRSLPTLVVALSDHM 721
Query: 59 VVKVACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
VV VA GS H +AL S G + ++WG + G+LG G+ L+P ++E+ +
Sbjct: 722 VVDVALGSGDAHSLALTSEG--------LVFAWGDGDYGKLGNGNCNGSLQPILVESLPR 773
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFG----LGENGQLGHGTTQSALVPE 172
V V GS + L+ E +T+G LG QL + Q VP
Sbjct: 774 -----VQRVFAGSQFSVALSS--------EGQLYTWGKATCLGH--QLVERSVQGCSVPR 818
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
V L Q+ +V V + H +SS+G+V+ WG +CP AS++ +PIL
Sbjct: 819 LVSSL-QHKRIVDVAVSVAHCLALSSSGEVFGWGRNDSQQICP-ASVSSEPL--LRTPIL 874
Query: 233 ISGNGPHGPKFQDPVQ-VACGAAHTVLVTDDGYK 265
+S P F P +AC +A +++ T ++
Sbjct: 875 VS-----LPTF--PASGIACTSAQSLVWTQSSHQ 901
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 28/225 (12%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G GE+ +LGHG T + VP ++ L Q+ + SV CG +++ ++ G++ +WG
Sbjct: 638 YSWGTGEDHRLGHGDTHARAVPTKIAALEQHC-VQSVYCGCSYSAAITCGGNLLTWGRGT 696
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
A L + D P L+ H V + G AH++ +T +G +++W
Sbjct: 697 ------YARLGHGNSDDRSLPTLVVALSDH---MVVDVALGSGDAHSLALTSEGL-VFAW 746
Query: 270 GRGRSGVLGTGKTIDFFAPAIVLWPPLTEEF-----------KQDELNTGG----LDDEI 314
G G G LG G P +V P + + +L T G L ++
Sbjct: 747 GDGDYGKLGNGNCNGSLQPILVESLPRVQRVFAGSQFSVALSSEGQLYTWGKATCLGHQL 806
Query: 315 KTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFG 359
+ ++G +L S+++ +++ +SV A G +FG
Sbjct: 807 VERSVQGCSV--PRLVSSLQHKRIVDVAVSVAHCLALSSSGEVFG 849
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 23/191 (12%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +L I + +W WG+ D G P + G VVKV CGS+
Sbjct: 4249 SGDAQTLCITDDDNVWSWGDG---DYGKLGRGGSDGCKLPYKIESLAGLGVVKVECGSQF 4305
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL +G Y+WG + +LG G + RPK + + + G
Sbjct: 4306 SVALTKSG--------AVYTWGKGDFHRLGHGSVDHVRRPKKVAALQGKK---IISIATG 4354
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
S H + +T+G + GQLG GT + P V L Q ++V V C
Sbjct: 4355 SLHCVACSD--------SGEVYTWGDNDEGQLGDGTVTAIQRPRLVAAL-QGKHIVKVTC 4405
Query: 189 GLFHTSVVSSA 199
G HT +S++
Sbjct: 4406 GSAHTLALSTS 4416
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ ++ G SLA+ AG +W WG D G P P+ G V+ VA
Sbjct: 3233 VVQIECGAQFSLALTRAGEVWTWGKG---DYYRLGHGGDQHVRKPQPIGGLRGRRVIHVA 3289
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ AG+ Y+WG N++GQ G G+ +P ++ D+ + V
Sbjct: 3290 VGALHCLAVTDAGQV--------YAWGDNDHGQQGSGNTFVNKKPALV--IGLDAVF-VN 3338
Query: 124 EVTCGSFHT 132
V CGS H+
Sbjct: 3339 RVACGSSHS 3347
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 36/228 (15%)
Query: 48 PSPVWDFHGHTVVKVA--CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P P+ + + +A C H +A+ S Y SWG + +LG GD +R
Sbjct: 605 PLPMEEVAHDVFISIAGHCEGRHFLAIDSNHNAY--------SWGTGEDHRLGHGDTHAR 656
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
P I Q +VY CG ++A +T T+G G +LGHG +
Sbjct: 657 AVPTKIAALEQHCVQSVY---CGCSYSAAIT--------CGGNLLTWGRGTYARLGHGNS 705
Query: 166 QSALVPEQVKELPQYVYL-VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA 224
+P V L ++ + V++ G H+ ++S G V++WG + G L
Sbjct: 706 DDRSLPTLVVALSDHMVVDVALGSGDAHSLALTSEGLVFAWG-DGDYG-----KLGNGNC 759
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG 272
++ PIL+ P+ Q +V G+ +V ++ +G +L++WG+
Sbjct: 760 NGSLQPILVESL----PRVQ---RVFAGSQFSVALSSEG-QLYTWGKA 799
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 32/210 (15%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y WG N+ GQLG G SR++ P E + P ++ G +T P+ L
Sbjct: 4052 YGWGHNHRGQLG-GLEGSRIKTPTPCEALSLLRP---VQLAGGEQSLFAVT----PDGKL 4103
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVW 203
+ G G G+LG G + S +P + L Q+V++ V+V+ G H +++ G+V+
Sbjct: 4104 ----FATGYGSGGRLGVGGSDSWAIPTLLGSL-QHVFVKKVAVNSGGKHCLALTTEGEVY 4158
Query: 204 SWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+WG E G LG S R + + ++ + ++ +ACG+AH+ +T
Sbjct: 4159 AWGEGEDGKLGHGNRMSYDRPKLVEHLNGMSVA-------------DIACGSAHSAAITA 4205
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ L +WG+GR G LG G + D P +V
Sbjct: 4206 SGHVL-TWGKGRYGRLGHGDSEDQLRPKLV 4234
>gi|195482069|ref|XP_002101897.1| GE17877 [Drosophila yakuba]
gi|194189421|gb|EDX03005.1| GE17877 [Drosophila yakuba]
Length = 2660
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 136/291 (46%), Gaps = 41/291 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + + P V + VACG
Sbjct: 823 AVHSGGKHALALTLDGKVFSWGEG---EDGKLGHGNRTTLDKPRLVEALRAKKIRDVACG 879
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S GE Y+WG G+LG GD ++L+PK++ V +V
Sbjct: 880 SSHSAAISSQGE--------LYTWGLGEYGRLGHGDNATQLKPKLVTALAGRR---VVQV 928
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L + + +++G G+ G+LG G ++ + P +++ L + +V
Sbjct: 929 ACGSRDAQTLALTE------DGAVFSWGDGDFGKLGRGGSEGSDTPHEIERL-SGIGVVQ 981
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ AG+VW+WG KG LG + + + + PI G
Sbjct: 982 IECGAQFSLALTRAGEVWTWG--KGDYYRLGHGGDQHVRKPQ------PI-------GGL 1026
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ + + VA GA H + VTD G ++++WG G G+G T PA+V+
Sbjct: 1027 RGRRVIHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGSGNTFVNKKPALVI 1076
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 130/290 (44%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ G ++ WG + G + +S P V +G +V +ACG
Sbjct: 1888 AVNSGGKHCLALTTEGEVYAWGEG---EDGKLGHGNRMSYDRPKLVEHLNGMSVADIACG 1944
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ ++G +WG G+LG GD E +LRPK++E + ++
Sbjct: 1945 SAHSAAITASGHVL--------TWGKGRYGRLGHGDSEDQLRPKLVEALLG---YRAIDI 1993
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + +P +++ L + +V
Sbjct: 1994 ACGSGDAQTLCITDDDN------VWSWGDGDYGKLGRGGSDGCKLPYKIESLAG-LGVVK 2046
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + R + A+ G
Sbjct: 2047 VECGSQFSVALTKSGAVYTWG--KGDFHRLGHGSVDHVRRPKKVAAL----------QGK 2094
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V +D G ++++WG G LG G P +V
Sbjct: 2095 KI---ISIATGSLHCVACSDSG-EVYTWGDNDEGQLGDGTVTAIQRPRLV 2140
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 104/233 (44%), Gaps = 32/233 (13%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V G +H +AL + GE Y +WG +G+LG G+R S RPK++E N S
Sbjct: 1887 VAVNSGGKHCLALTTEGEVY--------AWGEGEDGKLGHGNRMSYDRPKLVEHLNGMS- 1937
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V ++ CGS H+A +T T+G G G+LGHG ++ L P+ V+ L
Sbjct: 1938 --VADIACGSAHSAAIT--------ASGHVLTWGKGRYGRLGHGDSEDQLRPKLVEALLG 1987
Query: 180 YVYL-VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Y + ++ G T ++ +VWSWG L R + P I
Sbjct: 1988 YRAIDIACGSGDAQTLCITDDDNVWSWGDGD------YGKLGRGGSDGCKLPYKIESLAG 2041
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G V+V CG+ +V +T G +++WG+G LG G P V
Sbjct: 2042 LG-----VVKVECGSQFSVALTKSG-AVYTWGKGDFHRLGHGSVDHVRRPKKV 2088
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 89/204 (43%), Gaps = 21/204 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G S AI + G L+ WG L + G + P V G VV+V
Sbjct: 872 KIRDVACGSSHSAAISSQGELYTWG---LGEYGRLGHGDNATQLKPKLVTALAGRRVVQV 928
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L ED +SWG + G+LG G E P IE S V
Sbjct: 929 ACGSRDAQTLALT------EDGAVFSWGDGDFGKLGRGGSEGSDTPHEIERL---SGIGV 979
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT R ++ WT+G G+ +LGHG Q P+ + L +
Sbjct: 980 VQIECGAQFSLALT---RAGEV-----WTWGKGDYYRLGHGGDQHVRKPQPIGGL-RGRR 1030
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG 206
++ V G H V+ AG V++WG
Sbjct: 1031 VIHVAVGALHCLAVTDAGQVYAWG 1054
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 67/150 (44%), Gaps = 21/150 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G S+A+ +GA++ WG D G S+ P V G ++ +A
Sbjct: 2044 VVKVECGSQFSVALTKSGAVYTWGKG---DFHRLGHGSVDHVRRPKKVAALQGKKIISIA 2100
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H VA +GE Y +WG N+ GQLG G + RP+++ +
Sbjct: 2101 TGSLHCVACSDSGEVY--------TWGDNDEGQLGDGTVTAIQRPRLVAALQGKH---IV 2149
Query: 124 EVTCGSFHTALLTH-------RKRPNDMLE 146
+VTCGS HT L+ R PN LE
Sbjct: 2150 KVTCGSAHTLALSTSQLSERLRPLPNPPLE 2179
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 32/216 (14%)
Query: 82 EDLVC--YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
+DL C WG N+ QLG G + S+++ P +T ++ P + GS +++
Sbjct: 728 QDLPCTVMVWGLNDKEQLG-GLKGSKVKVPTFSQTISRLRP---IHIAGGSKSLFIVSQ- 782
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVDCGLFHTSVVS 197
+ + G G NG+LG G T + +P Q+ L QYV V+V G H ++
Sbjct: 783 -------DGKVYACGEGTNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALT 835
Query: 198 SAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
G V+SWG E G LG +L + +A+ K +D VACG++H
Sbjct: 836 LDGKVFSWGEGEDGKLGHGNRTTLDKPRLVEAL----------RAKKIRD---VACGSSH 882
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ ++ G +L++WG G G LG G P +V
Sbjct: 883 SAAISSQG-ELYTWGLGEYGRLGHGDNATQLKPKLV 917
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 23/191 (12%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +L I + +W WG+ D G P + G VVKV CGS+
Sbjct: 1997 SGDAQTLCITDDDNVWSWGDG---DYGKLGRGGSDGCKLPYKIESLAGLGVVKVECGSQF 2053
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL +G Y+WG + +LG G + RPK + + + G
Sbjct: 2054 SVALTKSG--------AVYTWGKGDFHRLGHGSVDHVRRPKKVAALQGKK---IISIATG 2102
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
S H + +T+G + GQLG GT + P V L Q ++V V C
Sbjct: 2103 SLHCVACSD--------SGEVYTWGDNDEGQLGDGTVTAIQRPRLVAAL-QGKHIVKVTC 2153
Query: 189 GLFHTSVVSSA 199
G HT +S++
Sbjct: 2154 GSAHTLALSTS 2164
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ ++ G SLA+ AG +W WG D G P P+ G V+ VA
Sbjct: 979 VVQIECGAQFSLALTRAGEVWTWGKG---DYYRLGHGGDQHVRKPQPIGGLRGRRVIHVA 1035
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ AG+ Y+WG N++GQ G G+ +P ++ D+ + V
Sbjct: 1036 VGALHCLAVTDAGQV--------YAWGDNDHGQQGSGNTFVNKKPALV--IGLDAVF-VN 1084
Query: 124 EVTCGSFHT 132
V CGS H+
Sbjct: 1085 RVACGSSHS 1093
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 32/210 (15%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y WG N+ GQLG G SR++ P E + P ++ G +T P+ L
Sbjct: 1800 YGWGHNHRGQLG-GLEGSRIKTPTPCEALSLLRP---VQLAGGEQSLFAVT----PDGKL 1851
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVW 203
+ G G G+LG G + S +P + L Q+V++ V+V+ G H +++ G+V+
Sbjct: 1852 ----FATGYGSGGRLGVGGSDSWAIPTLLGSL-QHVFVKKVAVNSGGKHCLALTTEGEVY 1906
Query: 204 SWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+WG E G LG S R + + ++ + ++ +ACG+AH+ +T
Sbjct: 1907 AWGEGEDGKLGHGNRMSYDRPKLVEHLNGMSVA-------------DIACGSAHSAAITA 1953
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ L +WG+GR G LG G + D P +V
Sbjct: 1954 SGHVL-TWGKGRYGRLGHGDSEDQLRPKLV 1982
>gi|114321834|ref|YP_743517.1| regulator of chromosome condensation, RCC1 [Alkalilimnicola
ehrlichii MLHE-1]
gi|114228228|gb|ABI58027.1| regulator of chromosome condensation, RCC1 [Alkalilimnicola
ehrlichii MLHE-1]
Length = 821
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 127/297 (42%), Gaps = 58/297 (19%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT-PSPVWDFHGHTVV 60
S +V AG +LA+ + G LW WG ++ G L + +PV +
Sbjct: 573 SDWATVSAGTGYTLAVKDDGTLWAWGR------NSHGQLGLGDTNNRDAPVQVASDNDWA 626
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V+ GS H +A+ + G ++WG N++GQLGLGD ++R P E D+ W
Sbjct: 627 AVSAGSRHTLAVKNDG--------TLWAWGRNSDGQLGLGDTDNRDVP---EQVGSDTDW 675
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
A V+ GS HT + + W +G +GQLG G T PEQV +
Sbjct: 676 AA--VSTGSGHTLAV--------KTDGTLWAWGRNSDGQLGLGDTDERHAPEQVGGDSDW 725
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGME--KGLGLCPNASLTRNEAGDAISPILISGNGP 238
+V G HT + + G +W WG+ LGL GD +G
Sbjct: 726 ---AAVTAGWQHTLAIKNDGTLWGWGLNLYGQLGL-----------GDT--------DGR 763
Query: 239 HGP----KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
H P D VA G HT+ V DDG L +WGR R G LG +T F P V
Sbjct: 764 HAPMQVGSDSDWATVAAGRYHTLAVKDDG-TLRAWGRNRFGQLGQ-RTYRFDQPQEV 818
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 124/296 (41%), Gaps = 55/296 (18%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
S S+ G +LA+ G LW WG N L T+ TP V
Sbjct: 523 SDWTSLSVGREHTLAVKADGTLWGWGQNYNGQLGLGDTD------DRKTPERV------- 569
Query: 59 VVKVACGSEHVVALVSAGETYK---GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
GS+ A VSAG Y +D ++WG N++GQLGLGD +R P + +
Sbjct: 570 ------GSDSDWATVSAGTGYTLAVKDDGTLWAWGRNSHGQLGLGDTNNRDAPVQVAS-- 621
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
D+ WA V+ GS HT + + + W +G +GQLG G T + VPEQV
Sbjct: 622 -DNDWAA--VSAGSRHTLAVKN--------DGTLWAWGRNSDGQLGLGDTDNRDVPEQVG 670
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
+ +V G HT V + G +W+WG + L + + +P + G
Sbjct: 671 SDTDWA---AVSTGSGHTLAVKTDGTLWAWGRNS------DGQLGLGDTDERHAPEQVGG 721
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ D V G HT+ + +DG LW WG G LG G T AP V
Sbjct: 722 D-------SDWAAVTAGWQHTLAIKNDG-TLWGWGLNLYGQLGLGDTDGRHAPMQV 769
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 117/291 (40%), Gaps = 51/291 (17%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
+ AG + A+ G+LW WG + S + G +PV ++
Sbjct: 476 AAASAGQYQTQAVKADGSLWGWGR----NHSGQLGLGDTDD-RHAPVQVGGDSDWTSLSV 530
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G EH +A+ + G + WG N NGQLGLGD + R P E DS WA
Sbjct: 531 GREHTLAVKADG--------TLWGWGQNYNGQLGLGDTDDRKTP---ERVGSDSDWAT-- 577
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
V+ G+ +T + + W +G +GQLG G T + P QV +
Sbjct: 578 VSAGTGYTLAVKD--------DGTLWAWGRNSHGQLGLGDTNNRDAPVQVASDNDW---A 626
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V G HT V + G +W+WG GLG N + D
Sbjct: 627 AVSAGSRHTLAVKNDGTLWAWGRNSDGQLGLGDTDNRDVPEQVGSDT------------- 673
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D V+ G+ HT+ V DG LW+WGR G LG G T + AP V
Sbjct: 674 ----DWAAVSTGSGHTLAVKTDG-TLWAWGRNSDGQLGLGDTDERHAPEQV 719
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 118/293 (40%), Gaps = 59/293 (20%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS---FTPSPVWDFHGHTVVKVA 63
+ AGG+ +LA+ G LW WG + G L + TP+ V
Sbjct: 128 LAAGGVHTLAMKADGTLWAWGQNNV------GQLGLGDTEKRDTPAQV------------ 169
Query: 64 CGSEHVVALVSAGETYK---GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
GS+ A VSAG Y +D ++WG N GQLGLGD + R P E DS W
Sbjct: 170 -GSDTDWAAVSAGGAYTLAVKDDGTLWAWGENYFGQLGLGDTDDRHAP---EQVGSDSDW 225
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V+ G HT L + W +G GQLG G T + PEQV +
Sbjct: 226 VA--VSAGRHHTLAL--------KADGTLWAWGRNYFGQLGLGGTTNRNAPEQVGSHSDW 275
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGP 238
++ D H+ V G +WSWG LGL R E GN
Sbjct: 276 AGVIGGD---RHSLAVREDGTLWSWGQNNVGQLGLGDTVERRRPEQ---------VGN-- 321
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D V+ G HT+ V +DG LW+WG G LG G T + AP V
Sbjct: 322 ----DSDWATVSAGLLHTLAVKNDG-TLWAWGGNGFGQLGLGDTDNRDAPVQV 369
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 122/296 (41%), Gaps = 61/296 (20%)
Query: 5 CSVKAGGMMSLAIDNAGALWMW-----GNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+V AGG +LA+ + G LW W G L D+ V S +
Sbjct: 176 AAVSAGGAYTLAVKDDGTLWAWGENYFGQLGLGDTDDRHAPEQVGSDSD----------W 225
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H +AL + G ++WG N GQLGLG +R P+ + + S
Sbjct: 226 VAVSAGRHHTLALKADG--------TLWAWGRNYFGQLGLGGTTNRNAPEQVGSH---SD 274
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
WA V G H+ L R+ + W++G GQLG G T PEQV
Sbjct: 275 WA--GVIGGDRHS--LAVRE------DGTLWSWGQNNVGQLGLGDTVERRRPEQVGNDSD 324
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG----MEKGLGLCPNASLTRNEAGDAISPILISG 235
+ +V GL HT V + G +W+WG + GLG N +P+ +
Sbjct: 325 W---ATVSAGLLHTLAVKNDGTLWAWGGNGFGQLGLGDTDNRD----------APVQVGS 371
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ D + G +++ V +DG LWSWG G LG G T D AP V
Sbjct: 372 D-------NDWAALNAGQRYSLAVKNDG-SLWSWGWNDFGELGLGDTDDRHAPEQV 419
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 125/332 (37%), Gaps = 77/332 (23%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWG-----NCPLPDSSTEGGFSLVSSFTPSPVWDFHG 56
S +V AG +LA+ G LW WG L ++ V S + D+ G
Sbjct: 223 SDWVAVSAGRHHTLALKADGTLWAWGRNYFGQLGLGGTTNRNAPEQVGSHS-----DWAG 277
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
V G H +A+ ED +SWG NN GQLGLGD R RP E
Sbjct: 278 -----VIGGDRHSLAVR--------EDGTLWSWGQNNVGQLGLGDTVERRRP---EQVGN 321
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
DS WA V+ G HT + + + W +G GQLG G T + P QV
Sbjct: 322 DSDWAT--VSAGLLHTLAVKN--------DGTLWAWGGNGFGQLGLGDTDNRDAPVQVGS 371
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSW------------------------------- 205
+ L + G ++ V + G +WSW
Sbjct: 372 DNDWAAL---NAGQRYSLAVKNDGSLWSWGWNDFGELGLGDTDDRHAPEQVGGGMEWAAV 428
Query: 206 --GMEKGLGLCPNASLT---RNEAGDAISPILISGNGP-HGPKFQDPVQVACGAAHTVLV 259
GM LG+ + +L RN+ G+ +++ P D + G T V
Sbjct: 429 TAGMYHTLGVKADGTLRAWGRNDFGELGLGVMVYITSPLQTVTEADWAAASAGQYQTQAV 488
Query: 260 TDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
DG LW WGR SG LG G T D AP V
Sbjct: 489 KADG-SLWGWGRNHSGQLGLGDTDDRHAPVQV 519
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 124/335 (37%), Gaps = 83/335 (24%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S +V AG + +LA+ N G LW WG GF + +
Sbjct: 323 SDWATVSAGLLHTLAVKNDGTLWAWGGN---------GFGQLGLGDTD-------NRDAP 366
Query: 62 VACGSEHVVALVSAGETYK---GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V GS++ A ++AG+ Y D +SWG N+ G+LGLGD + R P E
Sbjct: 367 VQVGSDNDWAALNAGQRYSLAVKNDGSLWSWGWNDFGELGLGDTDDRHAP---EQVGGGM 423
Query: 119 PWAVYEVTCGSFHT----------------------ALLTHRKRPNDML----------- 145
WA VT G +HT ++ + P +
Sbjct: 424 EWAA--VTAGMYHTLGVKADGTLRAWGRNDFGELGLGVMVYITSPLQTVTEADWAAASAG 481
Query: 146 ---------ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
+ W +G +GQLG G T P QV + S+ G HT V
Sbjct: 482 QYQTQAVKADGSLWGWGRNHSGQLGLGDTDDRHAPVQVGGDSDWT---SLSVGREHTLAV 538
Query: 197 SSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHT 256
+ G +W WG N L + D +P + + D V+ G +T
Sbjct: 539 KADGTLWGWGQNY------NGQLGLGDTDDRKTPERVGSD-------SDWATVSAGTGYT 585
Query: 257 VLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ V DDG LW+WGR G LG G T + AP V
Sbjct: 586 LAVKDDG-TLWAWGRNSHGQLGLGDTNNRDAPVQV 619
>gi|145357939|ref|NP_568268.3| Regulator of chromosome condensation-like protein with FYVE zinc
finger domain-containing protein [Arabidopsis thaliana]
gi|332004415|gb|AED91798.1| Regulator of chromosome condensation-like protein with FYVE zinc
finger domain-containing protein [Arabidopsis thaliana]
Length = 1075
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 112/244 (45%), Gaps = 41/244 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +ACG +H V + GE++ SWG + G+LG G + +PK+I+ N +
Sbjct: 310 VQNIACGGQHAVLVTKQGESF--------SWGEESEGRLGHGVDSNIQQPKLIDALNTTN 361
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ V CG FH+ +T L +T+G G+ G LGHG S VP++V L
Sbjct: 362 ---IELVACGEFHSCAVT--------LSGDLYTWGKGDFGVLGHGNEVSHWVPKRVNFLL 410
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +++ S+ CG +HT+VV+SAG ++++G + G+ L + P +
Sbjct: 411 EGIHVSSIACGPYHTAVVTSAGQLFTFG-DGTFGV-----LGHGDKKSVFIPREVD---- 460
Query: 239 HGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGKTIDFFA 287
K V+ ACG HT V + KL++WG G G LG G
Sbjct: 461 -SLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGNKEPKLV 519
Query: 288 PAIV 291
P V
Sbjct: 520 PTCV 523
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 128/292 (43%), Gaps = 36/292 (12%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G S A+ +G L+ WG D G + VS + P V + G V +ACG
Sbjct: 365 VACGEFHSCAVTLSGDLYTWGKG---DFGVLGHGNEVSHWVPKRVNFLLEGIHVSSIACG 421
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ +++G G LG GD++S P+ +++
Sbjct: 422 PYHTAVVTSAGQ--------LFTFGDGTFGVLGHGDKKSVFIPREVDSLKG---LRTVRA 470
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ G+LGHG + LVP V L +
Sbjct: 471 ACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGNKEPKLVPTCVAALVEPN 530
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG T ++++G V++ G P N D +P + G
Sbjct: 531 F-CQVACGHSLTVALTTSGHVYTMG-------SPVYGQLGNSHADGKTPNRVEG------ 576
Query: 242 KFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K ++ACGA H ++T ++++WG+G +G LG G D +P +V
Sbjct: 577 KLHKSFVEEIACGAYHVAVLTSR-TEVYTWGKGSNGRLGHGDVDDRNSPTLV 627
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 117/296 (39%), Gaps = 51/296 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
+ S+ G + + +AG L+ +G +G F ++ S F P V G
Sbjct: 414 HVSSIACGPYHTAVVTSAGQLFTFG---------DGTFGVLGHGDKKSVFIPREVDSLKG 464
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLV-------CYSWGANNNGQLGLGDRESRLRPK 109
V+ ACG H A+V E G ++WG + G+LG G++E +L P
Sbjct: 465 LRTVRAACGVWHTAAVV---EVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGNKEPKLVPT 521
Query: 110 IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
+ + + +V CG T LT +T G GQLG+ +
Sbjct: 522 CVAALVEPN---FCQVACGHSLTVALT--------TSGHVYTMGSPVYGQLGN-SHADGK 569
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
P +V+ ++ + CG +H +V++S +V++WG KG N L + D S
Sbjct: 570 TPNRVEGKLHKSFVEEIACGAYHVAVLTSRTEVYTWG--KG----SNGRLGHGDVDDRNS 623
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
P L+ K + +ACG T V W+ G +S G + F
Sbjct: 624 PTLV-----ESLKDKQVKSIACGTNFTAAVC---IHRWASGMDQSMCSGCRQPFSF 671
>gi|14586365|emb|CAC42896.1| putative protein [Arabidopsis thaliana]
Length = 1062
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 115/250 (46%), Gaps = 53/250 (21%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +ACG +H V + GE++ SWG + G+LG G + +PK+I+ N +
Sbjct: 297 VQNIACGGQHAVLVTKQGESF--------SWGEESEGRLGHGVDSNIQQPKLIDALNTTN 348
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ V CG FH+ +T L +T+G G+ G LGHG S VP++V L
Sbjct: 349 ---IELVACGEFHSCAVT--------LSGDLYTWGKGDFGVLGHGNEVSHWVPKRVNFLL 397
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +++ S+ CG +HT+VV+SAG ++++G + G+ + GD S +
Sbjct: 398 EGIHVSSIACGPYHTAVVTSAGQLFTFG-DGTFGVLGH--------GDKKSVFI------ 442
Query: 239 HGPKFQDP------VQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGK 281
P+ D V+ ACG HT V + KL++WG G G LG G
Sbjct: 443 --PREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGN 500
Query: 282 TIDFFAPAIV 291
P V
Sbjct: 501 KEPKLVPTCV 510
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 128/292 (43%), Gaps = 36/292 (12%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G S A+ +G L+ WG D G + VS + P V + G V +ACG
Sbjct: 352 VACGEFHSCAVTLSGDLYTWGKG---DFGVLGHGNEVSHWVPKRVNFLLEGIHVSSIACG 408
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ +++G G LG GD++S P+ +++
Sbjct: 409 PYHTAVVTSAGQ--------LFTFGDGTFGVLGHGDKKSVFIPREVDSLKG---LRTVRA 457
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ G+LGHG + LVP V L +
Sbjct: 458 ACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGNKEPKLVPTCVAALVEPN 517
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG T ++++G V++ G P N D +P + G
Sbjct: 518 F-CQVACGHSLTVALTTSGHVYTMG-------SPVYGQLGNSHADGKTPNRVEG------ 563
Query: 242 KFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K ++ACGA H ++T ++++WG+G +G LG G D +P +V
Sbjct: 564 KLHKSFVEEIACGAYHVAVLTSR-TEVYTWGKGSNGRLGHGDVDDRNSPTLV 614
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 117/296 (39%), Gaps = 51/296 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
+ S+ G + + +AG L+ +G +G F ++ S F P V G
Sbjct: 401 HVSSIACGPYHTAVVTSAGQLFTFG---------DGTFGVLGHGDKKSVFIPREVDSLKG 451
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLV-------CYSWGANNNGQLGLGDRESRLRPK 109
V+ ACG H A+V E G ++WG + G+LG G++E +L P
Sbjct: 452 LRTVRAACGVWHTAAVV---EVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGNKEPKLVPT 508
Query: 110 IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
+ + + +V CG T LT +T G GQLG+ +
Sbjct: 509 CVAALVEPN---FCQVACGHSLTVALT--------TSGHVYTMGSPVYGQLGN-SHADGK 556
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
P +V+ ++ + CG +H +V++S +V++WG KG N L + D S
Sbjct: 557 TPNRVEGKLHKSFVEEIACGAYHVAVLTSRTEVYTWG--KG----SNGRLGHGDVDDRNS 610
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
P L+ K + +ACG T V W+ G +S G + F
Sbjct: 611 PTLV-----ESLKDKQVKSIACGTNFTAAVC---IHRWASGMDQSMCSGCRQPFSF 658
>gi|350396381|ref|XP_003484535.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Bombus
impatiens]
Length = 1088
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 132/299 (44%), Gaps = 54/299 (18%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTVVKV 62
V G ++A++ G L+ WG S++EG L S +P V +V+V
Sbjct: 121 VACGAYHTIAVNEWGQLFSWG------SNSEGQLGLNSKNFMECSPRMVKTLGTSIIVQV 174
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPWA 121
ACG +H +AL + GE Y SWG+N+ GQLGLG D S ++PK+I T P A
Sbjct: 175 ACGMKHALALTNNGELY--------SWGSNSEGQLGLGVDIRSEVKPKLINTL-AGVPIA 225
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKELPQ 179
+ CG +H+ ++ FG G+N GQLG TQ+ +P Q++ L +
Sbjct: 226 F--IACGGYHSIAISKSGA----------IFGWGKNTFGQLGLNDTQNRNLPHQLQTL-R 272
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
+ CG + ++ G V++ G + G G N L R S +
Sbjct: 273 NAKICYAACGEEFSVFLTVDGGVFTCGAGMYGQLGHGSNNNEILPRQVMELMGSTV---- 328
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
Q++CG HT+ + ++++WG G +G LG T P +V P
Sbjct: 329 -----------TQISCGKRHTLALVPSQGRVYAWGLGGAGQLGNNSTRSIPTPQVVHGP 376
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 33/208 (15%)
Query: 80 KGEDLVCYSWGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
K D+ C WG +G+LGLG + E L P ++ F + S + ++ CG +T ++TH
Sbjct: 29 KKGDMFC--WGNTRHGELGLGGIEDEIILVPCQVD-FKKAS--EIQQIACGENYTVVITH 83
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
+ ++ G + GQLGH + L + + L +V+ V CG +HT V+
Sbjct: 84 --------DGKIYSCGNNDYGQLGHERGRKRL--QLILGLDAFVF-KKVACGAYHTIAVN 132
Query: 198 SAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
G ++SWG E LGL + SP ++ G VQVACG H
Sbjct: 133 EWGQLFSWGSNSEGQLGLNSKNFM-------ECSPRMVKTLGT-----SIIVQVACGMKH 180
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
+ +T++G +L+SWG G LG G I
Sbjct: 181 ALALTNNG-ELYSWGSNSEGQLGLGVDI 207
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 29/175 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHTVV 60
I + GG S+AI +GA++ WG +T G L + P + +
Sbjct: 224 IAFIACGGYHSIAISKSGAIFGWG------KNTFGQLGLNDTQNRNLPHQLQTLRNAKIC 277
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
ACG E V L G ++ GA GQLG G + + P+ + +
Sbjct: 278 YAACGEEFSVFLTVDGGV--------FTCGAGMYGQLGHGSNNNEILPRQVMELMGST-- 327
Query: 121 AVYEVTCGSFHT-ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
V +++CG HT AL+ + R + +GLG GQLG+ +T+S P+ V
Sbjct: 328 -VTQISCGKRHTLALVPSQGR--------VYAWGLGGAGQLGNNSTRSIPTPQVV 373
>gi|391344583|ref|XP_003746575.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like
[Metaseiulus occidentalis]
Length = 1152
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 106/225 (47%), Gaps = 37/225 (16%)
Query: 43 VSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD- 101
VS+ P PV +V+V CG +H +AL AG+ Y WG+N+ GQLG G+
Sbjct: 87 VSTTKPEPVTALQCLRIVQVCCGQQHSMALTEAGQVYM--------WGSNSKGQLGNGEG 138
Query: 102 RESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
+ESRL P+ ++T +P+ V ++ CGS H L + + +G NGQLG
Sbjct: 139 QESRLSPRFVKTL---APFTVVQIACGSNHCLALLN--------NGALYAWGDNGNGQLG 187
Query: 162 HGTT-QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNAS 218
GT + VP +V L + L + CG H+ V+S +G ++ WG + LGL N
Sbjct: 188 IGTVGEPQRVPVEVTNLLG-LPLSQIACGANHSMVLSKSGVIFVWGSNRFGQLGLSDNK- 245
Query: 219 LTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
D P L+ KF +A G AH+ +T G
Sbjct: 246 -------DRAFPTLLKTLRQQHVKF-----IAAGGAHSAALTAHG 278
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 98/239 (41%), Gaps = 51/239 (21%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV--SSFTPSPVWDFHGHTVVK 61
+ + G LA+ N GAL+ WG+ + + + G V P V + G + +
Sbjct: 156 VVQIACGSNHCLALLNNGALYAWGD----NGNGQLGIGTVGEPQRVPVEVTNLLGLPLSQ 211
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ACG+ H + L +G V + WG+N GQLGL D + R P +++T Q
Sbjct: 212 IACGANHSMVLSKSG--------VIFVWGSNRFGQLGLSDNKDRAFPTLLKTLRQQH--- 260
Query: 122 VYEVTCGSFHTALLT---------------HRKR---------PNDMLESMCWTF----- 152
V + G H+A LT H R P L ++
Sbjct: 261 VKFIAAGGAHSAALTAHGGVFTFGWSFYESHEVRISLRGTESNPQSALARKLFSLIEREF 320
Query: 153 ---GLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS-SAGDVWSWGM 207
G GQLGHG+ L P +++EL + + G HT + + G V+++G+
Sbjct: 321 CRHSYGSYGQLGHGSKNDQLTPMKIQEL-MGTTITQIALGRCHTVCYAPTVGKVFTFGL 378
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 25/193 (12%)
Query: 89 WGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESM 148
+G N+G+LGLG E + ++ + Q V ++ G+ HT +LT R
Sbjct: 21 FGNTNSGELGLGGIEDHI-VRVPRSIPQLEGIRVRQIATGAHHTLVLTSHGR-------- 71
Query: 149 CWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ G ++ QLG + + PE V L Q + +V V CG H+ ++ AG V+ WG
Sbjct: 72 VLSCGSNDHDQLGQEVSTTK--PEPVTAL-QCLRIVQVCCGQQHSMALTEAGQVYMWGSN 128
Query: 209 KGLGLCPNASLTRNEAGDA-ISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLW 267
L E ++ +SP + P VQ+ACG+ H + + ++G L+
Sbjct: 129 S------KGQLGNGEGQESRLSPRFVKTLAPF-----TVVQIACGSNHCLALLNNG-ALY 176
Query: 268 SWGRGRSGVLGTG 280
+WG +G LG G
Sbjct: 177 AWGDNGNGQLGIG 189
>gi|222619121|gb|EEE55253.1| hypothetical protein OsJ_03147 [Oryza sativa Japonica Group]
Length = 954
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 140/299 (46%), Gaps = 50/299 (16%)
Query: 7 VKAGGMMSLAIDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTVVK 61
+ G + A+ +G L+ WG N L TE VS + P V G V+
Sbjct: 313 ISCGEFHTCAVTTSGDLFNWGDGSYNVGLLGCGTE-----VSYWLPKKVSGPLEGLQVLS 367
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VACGS H S+G+ Y ++G G LG GDRE+ PK +E S +
Sbjct: 368 VACGSWHSALTTSSGKLY--------TFGDGTFGVLGHGDRETLAYPKEVEAL---SGFK 416
Query: 122 VYEVTCGSFHTALL---THRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+V CG +H+A + T++ N M + + +T+G G+ +LGHG + LVP+ V+ L
Sbjct: 417 TIKVACGIWHSAAIVEVTNQTGANVMSKKL-YTWGDGDKNRLGHGDKEPRLVPKCVQALL 475
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+Y + + CG T ++++G V++ +G N L N D P L+
Sbjct: 476 EYNFH-QLACGHNMTVALATSGRVFT------MGSSSNGQLG-NPKSDGKQPCLV----- 522
Query: 239 HGPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
QD + +++CGA+H ++T ++++WG G +G LG G D P +V
Sbjct: 523 -----QDRLASELVEEISCGASHVTVLTSRS-EVYTWGMGANGRLGHGDLKDRKKPCLV 575
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 125/290 (43%), Gaps = 45/290 (15%)
Query: 17 IDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVAL 72
I++ G +++WG + D T S V P P+ V ++ACG+ HV
Sbjct: 212 IESLGDVYVWGEVWTDVTPSDGHTSSSCSKVDVLIPKPLESDVVLDVNQIACGTRHVALT 271
Query: 73 VSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHT 132
GE + +WG G+LG G RPK++E+ S V ++CG FHT
Sbjct: 272 TRQGEVF--------TWGEEFGGRLGHGTDADISRPKLVESL---SLTVVDLISCGEFHT 320
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFH 192
+T D+ W G G LG GT S +P++V + + ++SV CG +H
Sbjct: 321 CAVT---TSGDLFN---WGDGSYNVGLLGCGTEVSYWLPKKVSGPLEGLQVLSVACGSWH 374
Query: 193 TSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
+++ +S+G ++++ G LG +L + +A+S ++VA
Sbjct: 375 SALTTSSGKLYTFGDGTFGVLGHGDRETLAYPKEVEALSGF-------------KTIKVA 421
Query: 251 CGAAHT---VLVTDD------GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
CG H+ V VT+ KL++WG G LG G P V
Sbjct: 422 CGIWHSAAIVEVTNQTGANVMSKKLYTWGDGDKNRLGHGDKEPRLVPKCV 471
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 114/271 (42%), Gaps = 52/271 (19%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
Q+ SV G S ++G L+ +G +G F ++ + P V G
Sbjct: 364 QVLSVACGSWHSALTTSSGKLYTFG---------DGTFGVLGHGDRETLAYPKEVEALSG 414
Query: 57 HTVVKVACGSEHVVALV----SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE 112
+KVACG H A+V G + L Y+WG + +LG GD+E RL PK ++
Sbjct: 415 FKTIKVACGIWHSAAIVEVTNQTGANVMSKKL--YTWGDGDKNRLGHGDKEPRLVPKCVQ 472
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT---QSAL 169
+ + +++ CG T L R +T G NGQLG+ + Q L
Sbjct: 473 ALLE---YNFHQLACGHNMTVALATSGR--------VFTMGSSSNGQLGNPKSDGKQPCL 521
Query: 170 VPEQV-KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
V +++ EL + + CG H +V++S +V++WGM N L + D
Sbjct: 522 VQDRLASELVE-----EISCGASHVTVLTSRSEVYTWGMG------ANGRLGHGDLKDRK 570
Query: 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLV 259
P L+ K + ++CG+ T +
Sbjct: 571 KPCLVE-----ALKDRHVKSISCGSNFTTCI 596
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 18/113 (15%)
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+ CG H ++ + G+V++WG E G LG +A ++R + +++S ++
Sbjct: 261 IACGTRHVALTTRQGEVFTWGEEFGGRLGHGTDADISRPKLVESLSLTVVD--------- 311
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTGKTIDFFAPAIVLWP 294
++CG HT VT G L++WG G G+LG G + ++ P V P
Sbjct: 312 ----LISCGEFHTCAVTTSG-DLFNWGDGSYNVGLLGCGTEVSYWLPKKVSGP 359
>gi|405972531|gb|EKC37295.1| X-linked retinitis pigmentosa GTPase regulator [Crassostrea gigas]
Length = 663
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 111/218 (50%), Gaps = 38/218 (17%)
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+A G++H VAL GE Y WG + GQLGLGD + + P ++ T N+
Sbjct: 144 LAAGADHSVALTDDGE--------LYVWGGGSEGQLGLGDIDDKSTPTLLSTDNK----- 190
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V V CG +HTA +T D+ E +TFG G+ G+LG GT V + +P+
Sbjct: 191 VISVACGYYHTAFVT------DVGE--VFTFGEGDGGKLGQGTDYGKAVAPKKVNIPEKA 242
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
SV CG HT V++ G V+++G E G G + +N+ +P+ ++
Sbjct: 243 K--SVACGGSHTVVLTECGKVYTFG-EGGNGQLGH----KNKYFYCETPVWLN------- 288
Query: 242 KFQDPV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
F+ V Q+A G HT LVT+ G +L+++G GR LG
Sbjct: 289 -FKHKVTQIAAGENHTALVTEKG-QLYTFGDGRHAKLG 324
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 117/268 (43%), Gaps = 56/268 (20%)
Query: 17 IDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAG 76
I +GA++ +G D+ P+ W G VACG EH + +G
Sbjct: 9 IPESGAIFTFGKSRFGDN------------LPNKFW-VRGDKAKSVACGDEHTALVTESG 55
Query: 77 ETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLT 136
+++G N+ GQLG+ + + RP ++ P V V CG HT + T
Sbjct: 56 R--------LFTFGVNDWGQLGIDEVKVSTRPCCVKKLK---PEKVKVVACGRIHTIVAT 104
Query: 137 HRKRPNDMLESMC-WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTS 194
ES C +TFG +GQLG S+ P +V+ P QY L + G H+
Sbjct: 105 ---------ESGCLYTFGANGDGQLGVEDIPSSNCPVKVECEPRQYKALAA---GADHSV 152
Query: 195 VVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACG 252
++ G+++ W G E LGL + D +P L+S + + VACG
Sbjct: 153 ALTDDGELYVWGGGSEGQLGL--------GDIDDKSTPTLLSTD-------NKVISVACG 197
Query: 253 AAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
HT VTD G +++++G G G LG G
Sbjct: 198 YYHTAFVTDVG-EVFTFGEGDGGKLGQG 224
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 119/273 (43%), Gaps = 39/273 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
SV G + + +G L+ +G + D G + S P V V VACG
Sbjct: 40 SVACGDEHTALVTESGRLFTFG---VNDWGQLGIDEVKVSTRPCCVKKLKPEKVKVVACG 96
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +G Y++GAN +GQLG+ D S P +E P +
Sbjct: 97 RIHTIVATESG--------CLYTFGANGDGQLGVEDIPSSNCPVKVEC----EPRQYKAL 144
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
G+ H+ LT D E W G G GQLG G P L ++S
Sbjct: 145 AAGADHSVALT------DDGELYVW--GGGSEGQLGLGDIDDKSTPTL---LSTDNKVIS 193
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
V CG +HT+ V+ G+V+++G G L + G A++P + N P K
Sbjct: 194 VACGYYHTAFVTDVGEVFTFGEGDGGKLGQG-----TDYGKAVAPKKV--NIPEKAK--- 243
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
VACG +HTV++T+ G K++++G G +G LG
Sbjct: 244 --SVACGGSHTVVLTECG-KVYTFGEGGNGQLG 273
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 30/171 (17%)
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL-PQYVYL 183
V CG HTAL+T R +TFG+ + GQLG + + P VK+L P+ V +
Sbjct: 41 VACGDEHTALVTESGR--------LFTFGVNDWGQLGIDEVKVSTRPCCVKKLKPEKVKV 92
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
V+ CG HT V + +G ++++G + L + + P+ +
Sbjct: 93 VA--CGRIHTIVATESGCLYTFGANG------DGQLGVEDIPSSNCPVKVEC-------- 136
Query: 244 QDPVQ---VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+P Q +A GA H+V +TDDG +L+ WG G G LG G D P ++
Sbjct: 137 -EPRQYKALAAGADHSVALTDDG-ELYVWGGGSEGQLGLGDIDDKSTPTLL 185
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 23/147 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS-----FTPSPVWDFHGHTVV 60
SV GG ++ + G ++ +G EGG + + +PVW H V
Sbjct: 244 SVACGGSHTVVLTECGKVYTFG---------EGGNGQLGHKNKYFYCETPVWLNFKHKVT 294
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++A G H + G+ Y++G + +LGL D E + + S +
Sbjct: 295 QIAAGENHTALVTEKGQ--------LYTFGDGRHAKLGL-DHECYSNQYFPQRSKRFSKF 345
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLES 147
V +V+CG H +L + + N ++S
Sbjct: 346 IVTQVSCGGCHMIVLAYPRLQNGEVDS 372
>gi|440798633|gb|ELR19700.1| regulator of chromosome condensation (RCC1) repeat domain
containing protein, partial [Acanthamoeba castellanii
str. Neff]
Length = 872
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 117/273 (42%), Gaps = 45/273 (16%)
Query: 38 GGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQL 97
G F+ + +P V VV+VA G +A+ S GE Y SWG N QL
Sbjct: 168 GSFTPYTQPSPEVVTGLQHVKVVEVAAGYSFSLAVTSQGEVY--------SWGFNEKCQL 219
Query: 98 GLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN 157
GLG R ++ P+++ + TCG H+ LL+ +TFGLG
Sbjct: 220 GLGHRYNQSVPQLVPHLQGVH---IVSATCGQQHSVLLS--------AAGHVYTFGLGVF 268
Query: 158 GQLGHGTTQSALVPEQVKEL--------PQYVYLVSVDCGLFHTSVVSSAGDVWSWG-ME 208
GQLGHG + P +V+ L +V + CG HT + +G VW+WG E
Sbjct: 269 GQLGHGVSSDERFPRRVEALVPAEEGVESAGERIVQIACGSHHTLALGVSGTVWTWGSAE 328
Query: 209 KGLGLCPN-----ASLTRNEAGDAI---SPILISG--NGPHGPKFQDPVQVACGAAHTVL 258
G N A+ R E A+ +P +SG +G H V+CG H +
Sbjct: 329 YGQQGGTNAYEDWATGQRAEKSAAMICATPRSLSGCFDGKH------IAHVSCGHLHNLA 382
Query: 259 VTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
DG ++SWG G GVLG G P ++
Sbjct: 383 TARDG-SVYSWGWGSYGVLGHGNHRFQLVPKLI 414
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 85/228 (37%), Gaps = 46/228 (20%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AG SLA+ + G ++ WG C L G + P V G +
Sbjct: 188 KVVEVAAGYSFSLAVTSQGEVYSWGFNEKCQL------GLGHRYNQSVPQLVPHLQGVHI 241
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF----- 114
V CG +H V L +AG Y++G GQLG G P+ +E
Sbjct: 242 VSATCGQQHSVLLSAAGH--------VYTFGLGVFGQLGHGVSSDERFPRRVEALVPAEE 293
Query: 115 -NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG------------ 161
+ + + ++ CGS HT L + WT+G E GQ G
Sbjct: 294 GVESAGERIVQIACGSHHTLALG--------VSGTVWTWGSAEYGQQGGTNAYEDWATGQ 345
Query: 162 HGTTQSALV---PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+A++ P + ++ V CG H + G V+SWG
Sbjct: 346 RAEKSAAMICATPRSLSGCFDGKHIAHVSCGHLHNLATARDGSVYSWG 393
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 108/283 (38%), Gaps = 82/283 (28%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES--RLRPKII 111
F G + VACG +H +A+ GE Y WG GQLG G+R++ L+P +
Sbjct: 26 FRGKRIRSVACGEQHSMAV--------GETGDVYVWGRAKEGQLGNGERKAANALKPVRV 77
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLT-----------HRK--------------------- 139
E + V CG H +T H+
Sbjct: 78 EGLRHER---VVAGVCGYNHCLAVTVGGKLYQWGMLHKHVEGSANKEYFGMAIGLSGLNS 134
Query: 140 -RPNDML-ESMCWTFGLGENGQ----------LGHGTTQSALVPEQVKELPQYVYLVSVD 187
R M+ S + G G+ G T + PE V L Q+V +V V
Sbjct: 135 DRMKRMVGRSHSTYYAAGATGEELEELSRVQNFGSFTPYTQPSPEVVTGL-QHVKVVEVA 193
Query: 188 CGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
G + V+S G+V+SWG + GLG N S+ P L+ P
Sbjct: 194 AGYSFSLAVTSQGEVYSWGFNEKCQLGLGHRYNQSV----------PQLV-------PHL 236
Query: 244 Q--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
Q V CG H+VL++ G+ ++++G G G LG G + D
Sbjct: 237 QGVHIVSATCGQQHSVLLSAAGH-VYTFGLGVFGQLGHGVSSD 278
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 153 GLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLG 212
G G+ G+LG G + + E + + SV CG H+ V GDV+ WG K G
Sbjct: 1 GTGKVGELGAGRDNKEALEPILLERFRGKRIRSVACGEQHSMAVGETGDVYVWGRAKE-G 59
Query: 213 LCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG 272
N +A +A+ P+ + G + + V CG H + VT G KL+ WG
Sbjct: 60 QLGNG---ERKAANALKPVRVEGL-----RHERVVAGVCGYNHCLAVTVGG-KLYQWGML 110
Query: 273 RSGVLGTGKTIDFFAPAIVL 292
V G+ ++F AI L
Sbjct: 111 HKHVEGSANK-EYFGMAIGL 129
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 29/135 (21%)
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG---------LGDRESRL 106
G +V++ACGS H +AL +G ++WG+ GQ G G R +
Sbjct: 299 GERIVQIACGSHHTLALGVSG--------TVWTWGSAEYGQQGGTNAYEDWATGQRAEKS 350
Query: 107 RPKIIETFNQDSPW----AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
I T S + V+CG H L T R + +++G G G LGH
Sbjct: 351 AAMICATPRSLSGCFDGKHIAHVSCGHLHN-LATAR-------DGSVYSWGWGSYGVLGH 402
Query: 163 GTTQSALVPEQVKEL 177
G + LVP+ ++ +
Sbjct: 403 GNHRFQLVPKLIRRI 417
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 24/143 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDS-------------STEGGFSLVSSFTPS 49
+I + G +LA+ +G +W WG+ E +++ + S
Sbjct: 301 RIVQIACGSHHTLALGVSGTVWTWGSAEYGQQGGTNAYEDWATGQRAEKSAAMICATPRS 360
Query: 50 PVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK 109
F G + V+CG H +A G Y SWG + G LG G+ +L PK
Sbjct: 361 LSGCFDGKHIAHVSCGHLHNLATARDGSVY--------SWGWGSYGVLGHGNHRFQLVPK 412
Query: 110 IIETFNQDSPWAVYEVTCGSFHT 132
+I + + + G+ H+
Sbjct: 413 LIRRIGGER---IVQTAAGAKHS 432
>gi|195345959|ref|XP_002039536.1| GM23027 [Drosophila sechellia]
gi|194134762|gb|EDW56278.1| GM23027 [Drosophila sechellia]
Length = 3806
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 136/291 (46%), Gaps = 41/291 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + + P V + VACG
Sbjct: 2732 AVHSGGKHALALTLDGKVFSWGEG---EDGKLGHGNRTTLDKPRLVEALRAKKIRDVACG 2788
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S GE Y +WG G+LG GD ++L+PK++ V +V
Sbjct: 2789 SSHSAAISSQGELY--------TWGLGEYGRLGHGDNTTQLKPKLVTALAGRR---VVQV 2837
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L + + +++G G+ G+LG G ++ + P +++ L + +V
Sbjct: 2838 ACGSRDAQTLALTE------DGAVFSWGDGDFGKLGRGGSEGSDTPHEIERL-SGIGVVQ 2890
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ AG+VW+WG KG LG + + + + PI G
Sbjct: 2891 IECGAQFSLALTRAGEVWTWG--KGDYYRLGHGGDQHVRKPQ------PI-------GGL 2935
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ + + VA GA H + VTD G ++++WG G G+G T PA+V+
Sbjct: 2936 RGRRVIHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGSGNTFVNKKPALVI 2985
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 89/204 (43%), Gaps = 21/204 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G S AI + G L+ WG L + G + P V G VV+V
Sbjct: 2781 KIRDVACGSSHSAAISSQGELYTWG---LGEYGRLGHGDNTTQLKPKLVTALAGRRVVQV 2837
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L ED +SWG + G+LG G E P IE S V
Sbjct: 2838 ACGSRDAQTLALT------EDGAVFSWGDGDFGKLGRGGSEGSDTPHEIERL---SGIGV 2888
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT R ++ WT+G G+ +LGHG Q P+ + L +
Sbjct: 2889 VQIECGAQFSLALT---RAGEV-----WTWGKGDYYRLGHGGDQHVRKPQPIGGL-RGRR 2939
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG 206
++ V G H V+ AG V++WG
Sbjct: 2940 VIHVAVGALHCLAVTDAGQVYAWG 2963
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 32/216 (14%)
Query: 82 EDLVC--YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
+DL C WG N+ QLG G + S+++ P +T ++ P + GS +++
Sbjct: 2637 QDLPCTVMVWGLNDKEQLG-GLKGSKVKVPTFSQTISRLRP---IHIAGGSKSLFIVSQ- 2691
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVDCGLFHTSVVS 197
+ + G G NG+LG G T + +P Q+ L QYV V+V G H ++
Sbjct: 2692 -------DGKVYACGEGTNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALT 2744
Query: 198 SAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
G V+SWG E G LG +L + +A+ K +D VACG++H
Sbjct: 2745 LDGKVFSWGEGEDGKLGHGNRTTLDKPRLVEAL----------RAKKIRD---VACGSSH 2791
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ ++ G +L++WG G G LG G P +V
Sbjct: 2792 SAAISSQG-ELYTWGLGEYGRLGHGDNTTQLKPKLV 2826
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 118/274 (43%), Gaps = 46/274 (16%)
Query: 1 MSQIC--SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
+ Q C SV G S AI G L WG + G + P+ V H
Sbjct: 319 LEQHCVQSVYCGCSYSAAITCGGNLLTWGRG---TYARLGHGNSDDRSLPTLVVALSDHM 375
Query: 59 VVKVACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
VV VA GS H +AL S G + ++WG + G+LG G+ L+P ++E+ +
Sbjct: 376 VVDVALGSGDAHSLALTSEG--------LVFAWGDGDYGKLGNGNCNGSLQPILVESLPR 427
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFG----LGENGQLGHGTTQSALVPE 172
V V GS + L+ E +T+G LG QL + Q VP
Sbjct: 428 -----VQRVFAGSQFSVALSS--------EGQLYTWGKATCLGH--QLVERSVQGCSVPR 472
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
V L Q+ +V V + H +SS+G+V+ WG +CP AS++ +PIL
Sbjct: 473 LVSSL-QHKRIVDVAVSVAHCLALSSSGEVFGWGRNDSQQICP-ASVSSEPL--LRTPIL 528
Query: 233 ISGNGPHGPKFQDPVQ-VACGAAHTVLVTDDGYK 265
+S P F P +AC +A +++ T ++
Sbjct: 529 VS-----LPTF--PASGIACTSAQSLVWTQSSHQ 555
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 28/225 (12%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G GE+ +LGHG T + VP ++ L Q+ + SV CG +++ ++ G++ +WG
Sbjct: 292 YSWGTGEDHRLGHGDTHARAVPTKIAALEQHC-VQSVYCGCSYSAAITCGGNLLTWGRGT 350
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
A L + D P L+ H V + G AH++ +T +G +++W
Sbjct: 351 ------YARLGHGNSDDRSLPTLVVALSDH---MVVDVALGSGDAHSLALTSEGL-VFAW 400
Query: 270 GRGRSGVLGTGKTIDFFAPAIVLWPPLTEEF-----------KQDELNTGG----LDDEI 314
G G G LG G P +V P + + +L T G L ++
Sbjct: 401 GDGDYGKLGNGNCNGSLQPILVESLPRVQRVFAGSQFSVALSSEGQLYTWGKATCLGHQL 460
Query: 315 KTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFG 359
+ ++G +L S+++ +++ +SV A G +FG
Sbjct: 461 VERSVQGCSV--PRLVSSLQHKRIVDVAVSVAHCLALSSSGEVFG 503
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ ++ G SLA+ AG +W WG D G P P+ G V+ VA
Sbjct: 2888 VVQIECGAQFSLALTRAGEVWTWGKG---DYYRLGHGGDQHVRKPQPIGGLRGRRVIHVA 2944
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ AG+ Y+WG N++GQ G G+ +P ++ D+ + V
Sbjct: 2945 VGALHCLAVTDAGQV--------YAWGDNDHGQQGSGNTFVNKKPALV--IGLDAVF-VN 2993
Query: 124 EVTCGSFHT 132
V CGS H+
Sbjct: 2994 RVACGSSHS 3002
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 36/228 (15%)
Query: 48 PSPVWDFHGHTVVKVA--CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P P+ + + +A C H +A+ S Y SWG + +LG GD +R
Sbjct: 259 PLPMEEVAHDVFISIAGHCEGRHFLAIDSNHNAY--------SWGTGEDHRLGHGDTHAR 310
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
P I Q +VY CG ++A +T T+G G +LGHG +
Sbjct: 311 AVPTKIAALEQHCVQSVY---CGCSYSAAIT--------CGGNLLTWGRGTYARLGHGNS 359
Query: 166 QSALVPEQVKELPQYVYL-VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA 224
+P V L ++ + V++ G H+ ++S G V++WG + G L
Sbjct: 360 DDRSLPTLVVALSDHMVVDVALGSGDAHSLALTSEGLVFAWG-DGDYG-----KLGNGNC 413
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG 272
++ PIL+ P+ Q +V G+ +V ++ +G +L++WG+
Sbjct: 414 NGSLQPILVESL----PRVQ---RVFAGSQFSVALSSEG-QLYTWGKA 453
>gi|345324538|ref|XP_003430830.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Ornithorhynchus
anatinus]
Length = 3053
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 131/292 (44%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P V G VV +A G
Sbjct: 2262 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVVESLRGIEVVDIAAG 2318
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + AG+ YSWG G+LG GD E +L+PK++E + V ++
Sbjct: 2319 GAHSACITVAGD--------LYSWGKGRYGRLGHGDSEDQLKPKLVEALQG---YRVIDI 2367
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 2368 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGV 2418
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R P + G
Sbjct: 2419 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRR--------PRQV--QGLQ 2466
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 2467 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 2514
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 114/243 (46%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VKVA S+ H +AL + GE + SWG + G+LG GD
Sbjct: 186 TLGPQLVQGLASRNIVKVAAHSDGHHYLALAATGEVF--------SWGCGDGGRLGHGDT 237
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I + + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 238 VPLEEPKMISALSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 289
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG L
Sbjct: 290 HGSSEDQTIPMLVTGL-KGLKVIDVSCGSGDAQTLAVTENGQVWSWGDGD------YGKL 342
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 343 GRGGSDGCKTPKLIE-------KLQDLDIVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 394
Query: 278 GTG 280
G G
Sbjct: 395 GHG 397
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 127/282 (45%), Gaps = 55/282 (19%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFT---PSPVWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G L +SS T P + + V KVA
Sbjct: 1188 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGISSGTVPLPRQITALSNYVVKKVA 1241
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H +AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 1242 VHSGGRHAMALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 1290
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A +T +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 1291 IRDIACGSSHSAAITSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 1341
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWG----MEKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 1342 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNVPQN---------IERL 1392
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
NG Q Q+ CGA ++ +T G +W+WGRG G L
Sbjct: 1393 NG------QGVCQIECGAQFSLALTKSGV-VWTWGRGDFGEL 1427
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 108/257 (42%), Gaps = 36/257 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + AGG S I AG L+ WG G P V G+ V+ +
Sbjct: 2311 EVVDIAAGGAHSACITVAGDLYSWGKGRY---GRLGHGDSEDQLKPKLVEALQGYRVIDI 2367
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L +D +SWG + G+LG G + P I++ + V
Sbjct: 2368 ACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TGLGV 2418
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 2419 VKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-QGKK 2469
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++++ G H + G+V++WG E LG ++ R P L++ G
Sbjct: 2470 VIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL--QG 2519
Query: 241 PKFQDPVQVACGAAHTV 257
K +VACG+AHT+
Sbjct: 2520 KKIN---RVACGSAHTL 2533
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 126/278 (45%), Gaps = 41/278 (14%)
Query: 8 KAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSE 67
KA G+ S A +++WG L D GG PS VV+VA GS+
Sbjct: 1137 KASGLESAATIRT-KVFVWG---LNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSK 1192
Query: 68 HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVT 126
+ A+ G+ Y + G NG+LGLG + P+ I S + V +V
Sbjct: 1193 SLFAVTVEGKVY--------ACGEATNGRLGLGISSGTVPLPRQITAL---SNYVVKKVA 1241
Query: 127 C--GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
G H LT ++ +++G G++G+LGH + + P ++ L + +
Sbjct: 1242 VHSGGRHAMALT--------VDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEAL-KTKRIR 1292
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
+ CG H++ ++S+G++++WG+ + L + + P ++ H
Sbjct: 1293 DIACGSSHSAAITSSGELYTWGLGE------YGRLGHGDNTTQLKPKMVKVLLGH----- 1341
Query: 245 DPVQVACGA--AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+QVACG+ A T+ +TD+G ++SWG G G LG G
Sbjct: 1342 RVIQVACGSRDAQTLALTDEGL-VFSWGDGDFGKLGRG 1378
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 118/269 (43%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 2164 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 2220
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ V V G H
Sbjct: 2221 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESIQHVFVKKV-AVNSGGKHCL 2271
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P V+ L + + +V + G H+
Sbjct: 2272 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVVESL-RGIEVVDIAAGGAHS 2322
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ ++ AGD++SWG + L ++ D + P L+ G + D +ACG+
Sbjct: 2323 ACITVAGDLYSWGKGR------YGRLGHGDSEDQLKPKLV--EALQGYRVID---IACGS 2371
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 2372 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 2399
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G S+A+ +GA++ WG D G S P V G V+ +A
Sbjct: 2418 VVKVECGSQFSVALTKSGAVYTWGKG---DYHRLGHGSDDHVRRPRQVQGLQGKKVIAIA 2474
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H V GE Y+WG N+ GQLG G + RP+++ +
Sbjct: 2475 TGSLHCVCCTEDGEV--------YTWGDNDEGQLGDGTTNAIQRPRLVAALQGKK---IN 2523
Query: 124 EVTCGSFHTALLTHRKRPN 142
V CGS HT + K N
Sbjct: 2524 RVACGSAHTLAWSTSKPAN 2542
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 80/205 (39%), Gaps = 28/205 (13%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
S +G +LA+ G +W WG+ D G TP + +VKV CG
Sbjct: 314 SCGSGDAQTLAVTENGQVWSWGDG---DYGKLGRGGSDGCKTPKLIEKLQDLDIVKVRCG 370
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S+ +AL G+ Y SWG +N +LG G E PK++E V +V
Sbjct: 371 SQFSIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VVDV 419
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYL 183
GS H LT E W G N Q H T P Q LP ++
Sbjct: 420 AAGSTHCLALTEDS------EVHSW----GSNDQCQHFDTLRITKP-QPSALPGLDTKHI 468
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGME 208
V + CG + SS + WS G+
Sbjct: 469 VGIACGPAQSFAWSSCSE-WSIGLR 492
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + L ++V + CG +++ +++ G++++WG
Sbjct: 222 FSWGCGDGGRLGHGDTVPLEEPKMISALSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 281
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G K + V+CG+ A T+ VT++G
Sbjct: 282 RGN------YGRLGHGSSEDQTIPMLVTGL-----KGLKVIDVSCGSGDAQTLAVTENG- 329
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 330 QVWSWGDGDYGKLGRGGSDGCKTPKLI 356
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 93/220 (42%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 2174 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 2211
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 2212 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFVKKVAVNSGGKHC 2270
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V +A
Sbjct: 2271 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVVESLRGIEV-------------VDIAA 2317
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ +T G L+SWG+GR G LG G + D P +V
Sbjct: 2318 GGAHSACITVAG-DLYSWGKGRYGRLGHGDSEDQLKPKLV 2356
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
H +++ G+V+SWG G G + E IS + G H V +AC
Sbjct: 211 HYLALAATGEVFSWGCGDG-GRLGHGDTVPLEEPKMISALSGKQAGKH------VVHIAC 263
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ ++ +T +G +L++WGRG G LG G + D P +V
Sbjct: 264 GSTYSAAITAEG-ELYTWGRGNYGRLGHGSSEDQTIPMLV 302
>gi|115439409|ref|NP_001043984.1| Os01g0700200 [Oryza sativa Japonica Group]
gi|56784719|dbj|BAD81868.1| zinc finger protein-like [Oryza sativa Japonica Group]
gi|56785284|dbj|BAD82210.1| zinc finger protein-like [Oryza sativa Japonica Group]
gi|113533515|dbj|BAF05898.1| Os01g0700200 [Oryza sativa Japonica Group]
gi|215704825|dbj|BAG94853.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 1044
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 140/299 (46%), Gaps = 50/299 (16%)
Query: 7 VKAGGMMSLAIDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTVVK 61
+ G + A+ +G L+ WG N L TE VS + P V G V+
Sbjct: 313 ISCGEFHTCAVTTSGDLFNWGDGSYNVGLLGCGTE-----VSYWLPKKVSGPLEGLQVLS 367
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VACGS H S+G+ Y++G G LG GDRE+ PK +E S +
Sbjct: 368 VACGSWHSALTTSSGK--------LYTFGDGTFGVLGHGDRETLAYPKEVEAL---SGFK 416
Query: 122 VYEVTCGSFHTALL---THRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+V CG +H+A + T++ N M + + +T+G G+ +LGHG + LVP+ V+ L
Sbjct: 417 TIKVACGIWHSAAIVEVTNQTGANVMSKKL-YTWGDGDKNRLGHGDKEPRLVPKCVQALL 475
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+Y + + CG T ++++G V++ +G N L N D P L+
Sbjct: 476 EYNFH-QLACGHNMTVALATSGRVFT------MGSSSNGQLG-NPKSDGKQPCLV----- 522
Query: 239 HGPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
QD + +++CGA+H ++T ++++WG G +G LG G D P +V
Sbjct: 523 -----QDRLASELVEEISCGASHVTVLTSRS-EVYTWGMGANGRLGHGDLKDRKKPCLV 575
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 125/290 (43%), Gaps = 45/290 (15%)
Query: 17 IDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVAL 72
I++ G +++WG + D T S V P P+ V ++ACG+ HV
Sbjct: 212 IESLGDVYVWGEVWTDVTPSDGHTSSSCSKVDVLIPKPLESDVVLDVNQIACGTRHVALT 271
Query: 73 VSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHT 132
GE + +WG G+LG G RPK++E+ S V ++CG FHT
Sbjct: 272 TRQGEVF--------TWGEEFGGRLGHGTDADISRPKLVESL---SLTVVDLISCGEFHT 320
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFH 192
+T D+ W G G LG GT S +P++V + + ++SV CG +H
Sbjct: 321 CAVT---TSGDLFN---WGDGSYNVGLLGCGTEVSYWLPKKVSGPLEGLQVLSVACGSWH 374
Query: 193 TSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
+++ +S+G ++++ G LG +L + +A+S ++VA
Sbjct: 375 SALTTSSGKLYTFGDGTFGVLGHGDRETLAYPKEVEALSGF-------------KTIKVA 421
Query: 251 CGAAHT---VLVTDD------GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
CG H+ V VT+ KL++WG G LG G P V
Sbjct: 422 CGIWHSAAIVEVTNQTGANVMSKKLYTWGDGDKNRLGHGDKEPRLVPKCV 471
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 111/275 (40%), Gaps = 60/275 (21%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
Q+ SV G S ++G L+ +G +G F ++ + P V G
Sbjct: 364 QVLSVACGSWHSALTTSSGKLYTFG---------DGTFGVLGHGDRETLAYPKEVEALSG 414
Query: 57 HTVVKVACGSEHVVALV----SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE 112
+KVACG H A+V G + L Y+WG + +LG GD+E RL PK ++
Sbjct: 415 FKTIKVACGIWHSAAIVEVTNQTGANVMSKKL--YTWGDGDKNRLGHGDKEPRLVPKCVQ 472
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT------- 165
+ + +++ CG T L R +T G NGQLG+ +
Sbjct: 473 ALLE---YNFHQLACGHNMTVALATSGR--------VFTMGSSSNGQLGNPKSDGKQPCL 521
Query: 166 -QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA 224
Q L E V+E + CG H +V++S +V++WGM N L +
Sbjct: 522 VQDRLASELVEE---------ISCGASHVTVLTSRSEVYTWGMG------ANGRLGHGDL 566
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLV 259
D P L+ K + ++CG+ T +
Sbjct: 567 KDRKKPCLV-----EALKDRHVKSISCGSNFTTCI 596
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 18/113 (15%)
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+ CG H ++ + G+V++WG E G LG +A ++R + +++S ++
Sbjct: 261 IACGTRHVALTTRQGEVFTWGEEFGGRLGHGTDADISRPKLVESLSLTVVD--------- 311
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTGKTIDFFAPAIVLWP 294
++CG HT VT G L++WG G G+LG G + ++ P V P
Sbjct: 312 ----LISCGEFHTCAVTTSG-DLFNWGDGSYNVGLLGCGTEVSYWLPKKVSGP 359
>gi|301610125|ref|XP_002934599.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Xenopus
(Silurana) tropicalis]
Length = 4842
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 119/453 (26%), Positives = 184/453 (40%), Gaps = 89/453 (19%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLP-----DSSTEGGFSLVSSFTPSPVWDFH 55
+ ++ S K +LA G ++ WG+ +SST+ L+
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQG-------TLQ 509
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G VV V+ G H A+ GE Y+WG + G+LG GD SR P +++ +
Sbjct: 510 GKVVVCVSAGYRHSAAVTEDGE--------LYTWGEGDFGRLGHGDSNSRNIPTLVKDIS 561
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ V+
Sbjct: 562 N-----VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVVE 609
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q ++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 610 AL-QGMFTRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEE 661
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
V ++ G +H + ++ D ++++WG G G G + P
Sbjct: 662 LAA-----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------P 705
Query: 296 LTEEFKQDELNTGGLDDEIKTKDLEG--------AEERDEKLSS-------AMEEMKLLQ 340
+T+ K GLD + G A RD ++ + +EE
Sbjct: 706 ITKPKK-----VSGLDGVAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFFH 760
Query: 341 SKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRS 394
+ S +ERY ++ I PF + +D GF + K N L A S
Sbjct: 761 LR-SFLERYCEKINSEIPPPPFPSSRD------HHGFLKLCLKMLSNHLALALAGGVATS 813
Query: 395 KLVRLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
L R RN+L + D + IQE+V E L
Sbjct: 814 ILGRQAGPLRNLLFRLMDASVPDEIQEVVIETL 846
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 128/278 (46%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4075 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4131
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ +++G + G+LGLG+ ++ P+ + + +V CG HT
Sbjct: 4132 ADGK--------LFTFGNGDYGRLGLGNTSNKKLPERVTALEG---LHIGQVACGLNHTL 4180
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ S+ W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4181 AVSADG-------SLVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4232
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN + P+L+ F D +A GA
Sbjct: 4233 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQLVPVLLG-------IFID--DIAVGA 4281
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ ++ G ++++WG G LG G T P +V
Sbjct: 4282 EHTLALSASG-EVYAWGSNSEGQLGLGHTNHVREPTLV 4318
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGTLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P +V
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVV 608
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 20/141 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P V G +
Sbjct: 4222 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQLVPVLLGIFID 4275
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G+EH +AL ++GE Y +WG+N+ GQLGLG P ++ +
Sbjct: 4276 DIAVGAEHTLALSASGEVY--------AWGSNSEGQLGLGHTNHVREPTLVTALQGKN-- 4325
Query: 121 AVYEVTCGSFHTALLTHRKRP 141
+ +++ G H+A T P
Sbjct: 4326 -IRQISAGRCHSAAWTAAPVP 4345
>gi|195168456|ref|XP_002025047.1| GL26839 [Drosophila persimilis]
gi|194108492|gb|EDW30535.1| GL26839 [Drosophila persimilis]
Length = 3840
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 137/291 (47%), Gaps = 41/291 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + + P V + VACG
Sbjct: 1923 AVHSGGKHALALTLDGKVFSWGEG---EDGKLGHGNRTTLDKPRLVETLRSKKIRDVACG 1979
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S GE Y+WG G+LG GD ++L+PK++ + V +V
Sbjct: 1980 SSHSAAISSQGE--------LYTWGLGEYGRLGHGDNATQLKPKLVAAL---AGRRVIQV 2028
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L + + +++G G+ G+LG G ++ + P +++ L + ++
Sbjct: 2029 ACGSRDAQTLALTE------DGSVFSWGDGDFGKLGRGGSEGSDTPHEIERL-SGIGVIQ 2081
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ AG+VW+WG KG LG + + + + PI G
Sbjct: 2082 IECGAQFSLALTRAGEVWTWG--KGDYYRLGHGGDQHVRKPQ------PI-------GGL 2126
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ + + VA GA H + VTD G ++++WG G G+G T PA+V+
Sbjct: 2127 RGRRVIHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGSGNTFVNKKPALVI 2176
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 127/288 (44%), Gaps = 37/288 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ G ++ WG + G + +S P V +G V +ACG
Sbjct: 3068 AVNSGGKHCLALTTEGEVYAWGEG---EDGKLGHGNRMSYDRPKLVEHLNGMNVADIACG 3124
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ ++G +WG G+LG GD E +LRP+++E + ++
Sbjct: 3125 SAHSAAITASGHVL--------TWGKGRYGRLGHGDSEDQLRPQLVEALLG---YRAIDI 3173
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + +P +++ L + ++
Sbjct: 3174 ACGSGDAQTLCITDDDN------VWSWGDGDYGKLGRGGSDGCKLPYKIESLAG-LGVIK 3226
Query: 186 VDCGLFHTSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
V+CG + ++ +G V++W G LG + R + A+ G K
Sbjct: 3227 VECGSQFSVALTKSGAVYTWSKGDFHRLGHGSVDHVRRPKKVAAL----------QGKKI 3276
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +A G+ H V +D G ++++WG G LG G P +V
Sbjct: 3277 ---ISIATGSLHCVACSDSG-EVYTWGDNDEGQLGDGTVTAIQRPRLV 3320
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 105/233 (45%), Gaps = 32/233 (13%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V G +H +AL + GE Y +WG +G+LG G+R S RPK++E N +
Sbjct: 3067 VAVNSGGKHCLALTTEGEVY--------AWGEGEDGKLGHGNRMSYDRPKLVEHLNGMN- 3117
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V ++ CGS H+A +T T+G G G+LGHG ++ L P+ V+ L
Sbjct: 3118 --VADIACGSAHSAAIT--------ASGHVLTWGKGRYGRLGHGDSEDQLRPQLVEALLG 3167
Query: 180 YVYL-VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Y + ++ G T ++ +VWSWG + G L R + P I
Sbjct: 3168 YRAIDIACGSGDAQTLCITDDDNVWSWG-DGDYG-----KLGRGGSDGCKLPYKIESLAG 3221
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G ++V CG+ +V +T G +++W +G LG G P V
Sbjct: 3222 LG-----VIKVECGSQFSVALTKSG-AVYTWSKGDFHRLGHGSVDHVRRPKKV 3268
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 89/204 (43%), Gaps = 21/204 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G S AI + G L+ WG L + G + P V G V++V
Sbjct: 1972 KIRDVACGSSHSAAISSQGELYTWG---LGEYGRLGHGDNATQLKPKLVAALAGRRVIQV 2028
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L ED +SWG + G+LG G E P IE S V
Sbjct: 2029 ACGSRDAQTLALT------EDGSVFSWGDGDFGKLGRGGSEGSDTPHEIERL---SGIGV 2079
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT R ++ WT+G G+ +LGHG Q P+ + L +
Sbjct: 2080 IQIECGAQFSLALT---RAGEV-----WTWGKGDYYRLGHGGDQHVRKPQPIGGL-RGRR 2130
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG 206
++ V G H V+ AG V++WG
Sbjct: 2131 VIHVAVGALHCLAVTDAGQVYAWG 2154
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 28/204 (13%)
Query: 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC--GSFHTALLTHR 138
G++ Y+ G NG+LGLG + P + +Q + V +V G H LT
Sbjct: 1881 GQNGKVYACGEGTNGRLGLGVTHNVPLPHQLPVLHQ---YVVKKVAVHSGGKHALALT-- 1935
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSS 198
L+ +++G GE+G+LGHG + P V+ L + + V CG H++ +SS
Sbjct: 1936 ------LDGKVFSWGEGEDGKLGHGNRTTLDKPRLVETL-RSKKIRDVACGSSHSAAISS 1988
Query: 199 AGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHT 256
G++++WG+ + L + + P L++ G + +QVACG+ A T
Sbjct: 1989 QGELYTWGLGE------YGRLGHGDNATQLKPKLVAALA--GRRV---IQVACGSRDAQT 2037
Query: 257 VLVTDDGYKLWSWGRGRSGVLGTG 280
+ +T+DG ++SWG G G LG G
Sbjct: 2038 LALTEDG-SVFSWGDGDFGKLGRG 2060
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 21/150 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G S+A+ +GA++ W D G S+ P V G ++ +A
Sbjct: 3224 VIKVECGSQFSVALTKSGAVYTWSKG---DFHRLGHGSVDHVRRPKKVAALQGKKIISIA 3280
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H VA +GE Y +WG N+ GQLG G + RP+++ +
Sbjct: 3281 TGSLHCVACSDSGEVY--------TWGDNDEGQLGDGTVTAIQRPRLVAALQGKH---IV 3329
Query: 124 EVTCGSFHTALLTH-------RKRPNDMLE 146
+VTCGS HT L+ R PN LE
Sbjct: 3330 KVTCGSAHTLALSTSQLSERLRPLPNPPLE 3359
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 98/216 (45%), Gaps = 32/216 (14%)
Query: 82 EDLVC--YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
+DL C WG N+ QLG G + S+++ P +T ++ P + GS ++
Sbjct: 1828 QDLPCTVMVWGLNDKEQLG-GLKGSKVKVPTFSQTISRLRP---IHIAGGSKSLFIVGQN 1883
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVDCGLFHTSVVS 197
+ + G G NG+LG G T + +P Q+ L QYV V+V G H ++
Sbjct: 1884 GK--------VYACGEGTNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALT 1935
Query: 198 SAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
G V+SWG E G LG +L + + + K +D VACG++H
Sbjct: 1936 LDGKVFSWGEGEDGKLGHGNRTTLDKPRLVETL----------RSKKIRD---VACGSSH 1982
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ ++ G +L++WG G G LG G P +V
Sbjct: 1983 SAAISSQG-ELYTWGLGEYGRLGHGDNATQLKPKLV 2017
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ ++ G SLA+ AG +W WG D G P P+ G V+ VA
Sbjct: 2079 VIQIECGAQFSLALTRAGEVWTWGKG---DYYRLGHGGDQHVRKPQPIGGLRGRRVIHVA 2135
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ AG+ Y+WG N++GQ G G+ +P ++ D+ + V
Sbjct: 2136 VGALHCLAVTDAGQV--------YAWGDNDHGQQGSGNTFVNKKPALV--IGLDAVF-VN 2184
Query: 124 EVTCGSFHT 132
V CGS H+
Sbjct: 2185 RVACGSSHS 2193
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 76/191 (39%), Gaps = 23/191 (12%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +L I + +W WG+ D G P + G V+KV CGS+
Sbjct: 3177 SGDAQTLCITDDDNVWSWGDG---DYGKLGRGGSDGCKLPYKIESLAGLGVIKVECGSQF 3233
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL +G Y+W + +LG G + RPK + + + G
Sbjct: 3234 SVALTKSG--------AVYTWSKGDFHRLGHGSVDHVRRPKKVAALQGKK---IISIATG 3282
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
S H + +T+G + GQLG GT + P V L Q ++V V C
Sbjct: 3283 SLHCVACSDSGE--------VYTWGDNDEGQLGDGTVTAIQRPRLVAAL-QGKHIVKVTC 3333
Query: 189 GLFHTSVVSSA 199
G HT +S++
Sbjct: 3334 GSAHTLALSTS 3344
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 32/210 (15%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y WG N+ GQLG G SR++ P E + P ++ G +T P+ L
Sbjct: 2980 YGWGHNHRGQLG-GLEGSRIKTPTPCEALSLLRP---VQLAGGEQSLFAVT----PDGKL 3031
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVW 203
+ G G G+LG G S +P + L Q+V++ V+V+ G H +++ G+V+
Sbjct: 3032 ----FATGYGSGGRLGVGGADSWAIPTLLGSL-QHVFVKKVAVNSGGKHCLALTTEGEVY 3086
Query: 204 SWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+WG E G LG S R + + ++ + ++ +ACG+AH+ +T
Sbjct: 3087 AWGEGEDGKLGHGNRMSYDRPKLVEHLNGMNVA-------------DIACGSAHSAAITA 3133
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ L +WG+GR G LG G + D P +V
Sbjct: 3134 SGHVL-TWGKGRYGRLGHGDSEDQLRPQLV 3162
>gi|297841169|ref|XP_002888466.1| hypothetical protein ARALYDRAFT_475695 [Arabidopsis lyrata subsp.
lyrata]
gi|297334307|gb|EFH64725.1| hypothetical protein ARALYDRAFT_475695 [Arabidopsis lyrata subsp.
lyrata]
Length = 1005
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 137/296 (46%), Gaps = 44/296 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF--SLVSSFTPSPVWDFHGHT--VVK 61
SV + A+ +G L++WG +GG S F + D G + +
Sbjct: 347 SVACSDHQTCAVTESGELYLWG--------IDGGTIEQSGSQFLTRKISDVLGGSLSIFS 398
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VACG+ H + S+G+ + ++G+ G LG G ES +PK +E+ +
Sbjct: 399 VACGAWHTAMVTSSGQLF--------TYGSRTFGVLGHGSLESVTKPKEVESLRR---MK 447
Query: 122 VYEVTCGSFHTALLTH----RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V V+CG +HTA + RK N +T+G G+ G+LGH + LVP V EL
Sbjct: 448 VISVSCGPWHTAAIVETAIDRKFYNAKSCGKLFTWGDGDKGRLGHADNKRKLVPTCVTEL 507
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISG 235
+ + + V CG T +S +G V++ G + LG CP A +I+ +L G
Sbjct: 508 IDHDF-IKVSCGWTLTVALSVSGTVYTMGSSIHGQLG-CPRAK------DKSINVVL--G 557
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
N Q +A G+ H ++T G +++WG+G +G LG G D +P +V
Sbjct: 558 NLTR----QFVKDIASGSHHVAVLTSFG-NVYTWGKGTNGQLGLGDVRDRNSPVLV 608
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 25/179 (13%)
Query: 19 NAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGET 78
+ G L+ WG+ D G P+ V + H +KV+CG VAL +G
Sbjct: 475 SCGKLFTWGD---GDKGRLGHADNKRKLVPTCVTELIDHDFIKVSCGWTLTVALSVSG-- 529
Query: 79 YKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET-FNQDSPWAVYEVTCGSFHTALLTH 137
Y+ G++ +GQLG R + K I + V ++ GS H A+LT
Sbjct: 530 ------TVYTMGSSIHGQLGC----PRAKDKSINVVLGNLTRQFVKDIASGSHHVAVLTS 579
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
+T+G G NGQLG G + P V+ L + + S+ CGL T+ +
Sbjct: 580 F--------GNVYTWGKGTNGQLGLGDVRDRNSPVLVEPLGDRL-VESIACGLNLTAAI 629
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +A GS HV L S G Y +WG NGQLGLGD R P ++E
Sbjct: 564 VKDIASGSHHVAVLTSFGNVY--------TWGKGTNGQLGLGDVRDRNSPVLVEPLGDR- 614
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
V + CG TA + K + ++ C
Sbjct: 615 --LVESIACGLNLTAAICLHKEISLTDQTAC 643
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 201 DVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT 260
D+ WG GL + S +N DA+SP L+ D ++ GA H LVT
Sbjct: 259 DIMIWGAITGL---IDGSKNQN---DALSPKLL-----ESATMFDVQSISLGAKHAALVT 307
Query: 261 DDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G +++ WG G SG LG ID P V
Sbjct: 308 RQG-EVFCWGNGNSGKLGLKVNIDIDHPKRV 337
>gi|281202576|gb|EFA76778.1| regulator of chromosome condensation domain-containing protein
[Polysphondylium pallidum PN500]
Length = 2305
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 127/276 (46%), Gaps = 42/276 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPL--PDSSTEGGFSLVSSFTPSPVWDFHGHT 58
+S ICS+ G S A+ G ++MWG + P +T G + P V
Sbjct: 576 ISDICSISCGSYYSAALTENGDVYMWGRGSVKNPPIATLGNGTFDDQLLPQKVESL--QE 633
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+V ++ G H A+ S GE +WG +GQLG GD ++ PK++++ S
Sbjct: 634 IVVISIGFYHSAAVKSNGE--------LLTWGCGEDGQLGHGDVFNQPIPKVVQSIT--S 683
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
W V +V CG HT LT + +T+G E GQLG G TQ P V L
Sbjct: 684 HW-VTQVQCGEKHTICLTKNGK--------VFTWGTSEYGQLGLGDTQKNCTPMLVTSLD 734
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS-PILISGNG 237
+Y +++ + CG H +V+++ +V +G +G + + IS PI++
Sbjct: 735 KY-HIIQIACGATHNAVLTNNREVLVFGNGAAMG-----------SANIISIPIMVP--- 779
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGR 273
K + +++CG T +T+ G +++WG G+
Sbjct: 780 --SLKIMNIERLSCGHYSTAALTECG-DVYTWGSGQ 812
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 121/278 (43%), Gaps = 41/278 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ +I + G S A+ + G L WG C + G + + P V H V
Sbjct: 631 LQEIVVISIGFYHSAAVKSNGELLTWG-CG--EDGQLGHGDVFNQPIPKVVQSITSHWVT 687
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+V CG +H + L G+ ++WG + GQLGLGD + P ++ + ++ +
Sbjct: 688 QVQCGEKHTICLTKNGK--------VFTWGTSEYGQLGLGDTQKNCTPMLVTSLDK---Y 736
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ ++ CG+ H A+LT+ + FG G G+ +P V L +
Sbjct: 737 HIIQIACGATHNAVLTNNRE--------VLVFGNGA----AMGSANIISIPIMVPSL-KI 783
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ + + CG + T+ ++ GDV++WG + LG S EA + L
Sbjct: 784 MNIERLSCGHYSTAALTECGDVYTWGSGQELGHGHGTS----EAHPKLVETL-------- 831
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
+ Q Q++CG H +TD G K+++ G+ G LG
Sbjct: 832 -RNQSIRQISCGGRHMAFLTDSG-KIYTSGKDPFGQLG 867
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 119/256 (46%), Gaps = 49/256 (19%)
Query: 17 IDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+D + L WG+ C L S E S TP + +F+ + ++CGS + AL
Sbjct: 538 LDTSRGLMTWGSGSYCKLGFKSVEKD----SQPTPERLPNFNISDICSISCGSYYSAALT 593
Query: 74 SAGETYKGEDLVCYSWGANNN---GQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF 130
G+ Y + G+ N LG G + +L P+ +E+ + + ++ G +
Sbjct: 594 ENGDVY------MWGRGSVKNPPIATLGNGTFDDQLLPQKVESLQE-----IVVISIGFY 642
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
H+A + K ++L T+G GE+GQLGHG + +P+ V+ + + ++ V CG
Sbjct: 643 HSAAV---KSNGELL-----TWGCGEDGQLGHGDVFNQPIPKVVQSITSH-WVTQVQCGE 693
Query: 191 FHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 246
HT ++ G V++WG + GLG + +P+L++ +
Sbjct: 694 KHTICLTKNGKVFTWGTSEYGQLGLG----------DTQKNCTPMLVTSLDKY-----HI 738
Query: 247 VQVACGAAHTVLVTDD 262
+Q+ACGA H ++T++
Sbjct: 739 IQIACGATHNAVLTNN 754
>gi|443690304|gb|ELT92472.1| hypothetical protein CAPTEDRAFT_172844 [Capitella teleta]
Length = 4817
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 125/290 (43%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
++ +GG LA+ G ++ WG + G + P + G VV +A G
Sbjct: 4027 AINSGGKHCLALSAEGEVYSWGE---GEDGKLGHGNRSPCDRPRAIESLRGKEVVDIAAG 4083
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + S GE YSWG G+LG GD E + +PK+++ + V +V
Sbjct: 4084 GAHSACITSTGE--------LYSWGKGRYGRLGHGDSEDQTKPKLVDALKG---YRVTDV 4132
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L + W++G G+ G+LG G + VP ++ L Q + ++
Sbjct: 4133 ACGSGDAQTLCITD------DDSVWSWGDGDYGKLGRGGSDGCKVPMKIDAL-QGLGVIK 4185
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + R + G
Sbjct: 4186 VECGSQFSVALTKSGAVYTWG--KGDYHRLGHGTEDHIRRPRRCTTL----------QGK 4233
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K V +ACG+ H V TD G ++++WG G LG G T P +V
Sbjct: 4234 KI---VSIACGSLHCVACTDAG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4279
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 129/290 (44%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG D G FS ++ P + V +ACG
Sbjct: 3006 AVHSGGRHAMALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIEALRSKRVRDIACG 3062
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H A++S G+ Y+WG G+LG GD ++LRPK+++ V +V
Sbjct: 3063 GSHSAAIISNGD--------LYTWGLGEYGRLGHGDNTTQLRPKLVKALEGQR---VIQV 3111
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
GS L +++G G+ G+LG G ++ VP ++ L V +
Sbjct: 3112 ALGSRDAQTLALTD------SGTVYSWGDGDFGKLGRGGSEGCSVPHPIERL-NGVGVCQ 3164
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ +G VW+WG KG LG +A + + + + +
Sbjct: 3165 IECGAQFSLALTKSGQVWTWG--KGDYFRLGHGTDAHVRKPQLVETL------------- 3209
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + VA GA H + V D+G ++++WG G G T PA+V
Sbjct: 3210 KGKKVTHVAVGALHCLSVLDNG-QVYAWGDNDHGQQGNSTTTVNRKPALV 3258
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 124/272 (45%), Gaps = 33/272 (12%)
Query: 11 GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVV 70
G LA+ + G ++ WGN D G V+ +P + + HG +VV VACGS H
Sbjct: 487 GSHCLALTSEGDVYSWGN---GDFGKLGHGDTVTCDSPMLINELHGKSVVNVACGSHHSA 543
Query: 71 ALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF 130
A+ ++GE ++WG + G+LGLG E L P ++ + V +V CGS
Sbjct: 544 AITASGE--------LFTWGRGSFGRLGLGSTEDILTPALVSGLLGVT---VVDVACGSG 592
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
+ + +++G GE G+LG G ++ P+ V +L Q + + V CG
Sbjct: 593 DAQTIALADTGS------VYSWGDGEYGKLGRGGSEGCKAPKLVDKL-QGLDVTRVYCGP 645
Query: 191 FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
+++ V G V++WG +G L E + + G H ++
Sbjct: 646 QYSAAVCKNGAVFTWGNGEGYKLGHG-----TEEHVRFPRQVETLAGKH------VTSLS 694
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
G+ H + T++G +L SWGR G LG G T
Sbjct: 695 LGSHHCLATTEEG-ELLSWGRNDKGQLGEGHT 725
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 109/257 (42%), Gaps = 36/257 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + GG S AI + G L+ WG L + G + P V G V++V
Sbjct: 3055 RVRDIACGGSHSAAIISNGDLYTWG---LGEYGRLGHGDNTTQLRPKLVKALEGQRVIQV 3111
Query: 63 ACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
A GS +AL +G YSWG + G+LG G E P IE N
Sbjct: 3112 ALGSRDAQTLALTDSG--------TVYSWGDGDFGKLGRGGSEGCSVPHPIERLNG---V 3160
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++ CG+ + LT WT+G G+ +LGHGT P+ V+ L +
Sbjct: 3161 GVCQIECGAQFSLALTK--------SGQVWTWGKGDYFRLGHGTDAHVRKPQLVETL-KG 3211
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ V G H V G V++WG + G N++ T N P L+ G G
Sbjct: 3212 KKVTHVAVGALHCLSVLDNGQVYAWG-DNDHGQQGNSTTTVNR-----KPALV--QGLEG 3263
Query: 241 PKFQDPVQVACGAAHTV 257
K +VACG++H++
Sbjct: 3264 CKIS---RVACGSSHSI 3277
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS---FTPSPVWDFHGHTVV 60
+ +V G S AI +G L+ WG + G L S+ TP+ V G TVV
Sbjct: 532 VVNVACGSHHSAAITASGELFTWGR------GSFGRLGLGSTEDILTPALVSGLLGVTVV 585
Query: 61 KVACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VACGS +AL G Y SWG G+LG G E PK+++
Sbjct: 586 DVACGSGDAQTIALADTGSVY--------SWGDGEYGKLGRGGSEGCKAPKLVDKLQG-- 635
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V V CG ++A + +T+G GE +LGHGT + P QV+ L
Sbjct: 636 -LDVTRVYCGPQYSAAVCK--------NGAVFTWGNGEGYKLGHGTEEHVRFPRQVETLA 686
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
++ S+ G H + G++ SWG
Sbjct: 687 GK-HVTSLSLGSHHCLATTEEGELLSWG 713
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G S+A+ +GA++ WG D G + P G +V +A
Sbjct: 4183 VIKVECGSQFSVALTKSGAVYTWGK---GDYHRLGHGTEDHIRRPRRCTTLQGKKIVSIA 4239
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CGS H VA AGE Y+WG N+ GQLG G + RP+++ +
Sbjct: 4240 CGSLHCVACTDAGEV--------YTWGDNDEGQLGDGTTNAIQRPRLVAALQGKK---IN 4288
Query: 124 EVTCGSFHT 132
V CGS H+
Sbjct: 4289 RVACGSAHS 4297
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 103/244 (42%), Gaps = 60/244 (24%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+++VAC S ++ L+ G YK N
Sbjct: 436 IIQVACSSNSLLILLRTGRVYK--------------------------------MTNSAE 463
Query: 119 PWAVYEV-TCGSFHTALLTHRKRPNDML----ESMCWTFGLGENGQLGHGTTQSALVPEQ 173
P +++E+ T L + L E +++G G+ G+LGHG T + P
Sbjct: 464 PQSMHEISTLADIEIIKLAAHSEGSHCLALTSEGDVYSWGNGDFGKLGHGDTVTCDSPML 523
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAIS 229
+ EL +V+V CG H++ ++++G++++WG GLG D ++
Sbjct: 524 INEL-HGKSVVNVACGSHHSAAITASGELFTWGRGSFGRLGLG----------STEDILT 572
Query: 230 PILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
P L+SG G D VACG+ A T+ + D G ++SWG G G LG G + A
Sbjct: 573 PALVSG--LLGVTVVD---VACGSGDAQTIALADTG-SVYSWGDGEYGKLGRGGSEGCKA 626
Query: 288 PAIV 291
P +V
Sbjct: 627 PKLV 630
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 94/230 (40%), Gaps = 27/230 (11%)
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVY 123
S+ + V G K + WG N+ QLG G + S+++ P I ET S
Sbjct: 2895 ASQVMAKKVKCGSGVKDIQTQVFVWGLNDKDQLG-GPKGSKIKTPGINETL---STLKCV 2950
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL-VPEQVKELPQYVY 182
++ GS +T + + G NG+LG G + + P Q+ L QYV
Sbjct: 2951 QIVGGSKSLFCVTQ--------DGKLFACGEATNGRLGLGISAGNVPQPRQLTSLSQYVI 3002
Query: 183 -LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+V G H ++ G V+SWG + L + P LI
Sbjct: 3003 KKVAVHSGGRHAMALTVDGKVFSWGEGD------DGKLGHFSRMNCDKPRLI--EALRSK 3054
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +D +ACG +H+ + +G L++WG G G LG G P +V
Sbjct: 3055 RVRD---IACGGSHSAAIISNG-DLYTWGLGEYGRLGHGDNTTQLRPKLV 3100
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 19/131 (14%)
Query: 165 TQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLT 220
T S P ++ + Q+V++ V+++ G H +S+ G+V+SWG E G LG +
Sbjct: 4006 TDSVATPTLIESI-QHVFIRKVAINSGGKHCLALSAEGEVYSWGEGEDGKLGHGNRSPCD 4064
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
R A +++ + ++ V +A G AH+ +T G +L+SWG+GR G LG G
Sbjct: 4065 RPRAIESL-------------RGKEVVDIAAGGAHSACITSTG-ELYSWGKGRYGRLGHG 4110
Query: 281 KTIDFFAPAIV 291
+ D P +V
Sbjct: 4111 DSEDQTKPKLV 4121
>gi|218188915|gb|EEC71342.1| hypothetical protein OsI_03406 [Oryza sativa Indica Group]
Length = 848
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 140/299 (46%), Gaps = 50/299 (16%)
Query: 7 VKAGGMMSLAIDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPVWD-FHGHTVVK 61
+ G + A+ +G L+ WG N L TE VS + P V G V+
Sbjct: 313 ISCGEFHTCAVTTSGDLFNWGDGSYNVGLLGCGTE-----VSYWLPKKVSGPLEGLQVLS 367
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VACGS H S+G+ Y ++G G LG GDRE+ PK +E S +
Sbjct: 368 VACGSWHSALTTSSGKLY--------TFGDGTFGVLGHGDRETLAYPKEVEAL---SGFK 416
Query: 122 VYEVTCGSFHTALL---THRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+V CG +H+A + T++ N M + + +T+G G+ +LGHG + LVP+ V+ L
Sbjct: 417 TIKVACGIWHSAAIVEVTNQTGANVMSKKL-YTWGDGDKNRLGHGDKEPRLVPKCVQALL 475
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+Y + + CG T ++++G V++ +G N L N D P L+
Sbjct: 476 EYDFH-QLACGHNMTVALATSGRVFT------MGSSSNGQLG-NPKSDGKQPCLV----- 522
Query: 239 HGPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
QD + +++CGA+H ++T ++++WG G +G LG G D P +V
Sbjct: 523 -----QDRLASELVEEISCGASHVTVLTSRS-EVYTWGMGANGRLGHGDLKDRKKPCLV 575
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 125/290 (43%), Gaps = 45/290 (15%)
Query: 17 IDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVAL 72
I++ G +++WG + D T S V P P+ V ++ACG+ HV
Sbjct: 212 IESLGDVYVWGEVWTDVTPSDGHTSSSCSKVDVLIPKPLESDVVLDVNQIACGTRHVALT 271
Query: 73 VSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHT 132
GE + +WG G+LG G RPK++E+ S V ++CG FHT
Sbjct: 272 TRQGEVF--------TWGEEFGGRLGHGTDADISRPKLVESL---SLTVVDLISCGEFHT 320
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFH 192
+T D+ W G G LG GT S +P++V + + ++SV CG +H
Sbjct: 321 CAVT---TSGDLFN---WGDGSYNVGLLGCGTEVSYWLPKKVSGPLEGLQVLSVACGSWH 374
Query: 193 TSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
+++ +S+G ++++ G LG +L + +A+S ++VA
Sbjct: 375 SALTTSSGKLYTFGDGTFGVLGHGDRETLAYPKEVEALSGF-------------KTIKVA 421
Query: 251 CGAAHT---VLVTDD------GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
CG H+ V VT+ KL++WG G LG G P V
Sbjct: 422 CGIWHSAAIVEVTNQTGANVMSKKLYTWGDGDKNRLGHGDKEPRLVPKCV 471
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 114/271 (42%), Gaps = 52/271 (19%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
Q+ SV G S ++G L+ +G +G F ++ + P V G
Sbjct: 364 QVLSVACGSWHSALTTSSGKLYTFG---------DGTFGVLGHGDRETLAYPKEVEALSG 414
Query: 57 HTVVKVACGSEHVVALV----SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE 112
+KVACG H A+V G + L Y+WG + +LG GD+E RL PK ++
Sbjct: 415 FKTIKVACGIWHSAAIVEVTNQTGANVMSKKL--YTWGDGDKNRLGHGDKEPRLVPKCVQ 472
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT---QSAL 169
+ + +++ CG T L R +T G NGQLG+ + Q L
Sbjct: 473 ALLE---YDFHQLACGHNMTVALATSGR--------VFTMGSSSNGQLGNPKSDGKQPCL 521
Query: 170 VPEQV-KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
V +++ EL + + CG H +V++S +V++WGM N L + D
Sbjct: 522 VQDRLASELVE-----EISCGASHVTVLTSRSEVYTWGMG------ANGRLGHGDLKDRK 570
Query: 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLV 259
P L+ K + ++CG+ T +
Sbjct: 571 KPCLVE-----ALKDRHVKSISCGSNFTTCI 596
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 18/113 (15%)
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+ CG H ++ + G+V++WG E G LG +A ++R + +++S ++
Sbjct: 261 IACGTRHVALTTRQGEVFTWGEEFGGRLGHGTDADISRPKLVESLSLTVVD--------- 311
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTGKTIDFFAPAIVLWP 294
++CG HT VT G L++WG G G+LG G + ++ P V P
Sbjct: 312 ----LISCGEFHTCAVTTSG-DLFNWGDGSYNVGLLGCGTEVSYWLPKKVSGP 359
>gi|261405028|ref|YP_003241269.1| hypothetical protein GYMC10_1173 [Paenibacillus sp. Y412MC10]
gi|261281491|gb|ACX63462.1| Listeria/Bacterioides repeat protein [Paenibacillus sp. Y412MC10]
Length = 1280
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 102/232 (43%), Gaps = 39/232 (16%)
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
K+ G H +LVS+GE YSWG + GQLG G +R P + + N
Sbjct: 37 KIVAGYYHTASLVSSGE--------VYSWGYGDRGQLGDGTWNTRTTPVMAKNLNH---- 84
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++ G + L + WT+G ENGQLG GT + P QV P
Sbjct: 85 -VIDIHSGVRSSMALRQ--------DGTVWTWGANENGQLGIGTITNVNAPAQV---PGL 132
Query: 181 VYLVSVDCGL-FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ ++ GL +H +S G VW+WG L ++ +N SP+L++G
Sbjct: 133 SGIKAISGGLAYHGMALSENGTVWTWGKNDNGELGNGTTIQQN------SPVLVAG---- 182
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D +A G +++ + DG +W+WG SG LG G T D P V
Sbjct: 183 ---LSDVTAIAAGGYYSLALKSDG-TVWAWGVNGSGELGDGTTTDRHVPVQV 230
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 117/283 (41%), Gaps = 48/283 (16%)
Query: 1 MSQICSVKAG-GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+S I ++ G +A+ G +W WG D+ G + + +P V V
Sbjct: 132 LSGIKAISGGLAYHGMALSENGTVWTWGKN---DNGELGNGTTIQQNSPVLVAGLS--DV 186
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+A G + +AL S G ++WG N +G+LG G R P +
Sbjct: 187 TAIAAGGYYSLALKSDG--------TVWAWGVNGSGELGDGTTTDRHVPVQVAGLTD--- 235
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V + G H+ + + W +G G LG GT P QV+ L
Sbjct: 236 --VMAIAAGGSHSLAIKQ--------DGTVWAWGNNTYGTLGDGTRTHRTRPVQVRNLQ- 284
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++V+V G +H+ V AG+VWSWG ++ LGL NAS ++ P+ +
Sbjct: 285 --HIVAVAGGGYHSLAVDRAGNVWSWGDNSQQQLGLNSNAS--------SLIPVPV---- 330
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
P + +++ G H+V + DG +W WG G +G G
Sbjct: 331 ---PGIEHVREISAGGFHSVAMKKDG-TVWGWGYNSGGQIGDG 369
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 124/322 (38%), Gaps = 55/322 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + + +G S+A+ G +W WG ++ G ++ + P+ V G
Sbjct: 82 LNHVIDIHSGVRSSMALRQDGTVWTWGAN---ENGQLGIGTITNVNAPAQVPGLSG---- 134
Query: 61 KVACGSEHVVALVSAGETYKG----EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+ +S G Y G E+ ++WG N+NG+LG G + P ++ +
Sbjct: 135 ---------IKAISGGLAYHGMALSENGTVWTWGKNDNGELGNGTTIQQNSPVLVAGLSD 185
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V + G +++ L + W +G+ +G+LG GTT VP QV
Sbjct: 186 -----VTAIAAGGYYSLALKS--------DGTVWAWGVNGSGELGDGTTTDRHVPVQVAG 232
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L ++++ G H+ + G VW+WG G + + T P+ +
Sbjct: 233 LTD---VMAIAAGGSHSLAIKQDGTVWAWG-NNTYGTLGDGTRTHR-----TRPVQVR-- 281
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPL 296
Q V VA G H+ L D +WSWG LG P V P
Sbjct: 282 -----NLQHIVAVAGGGYHS-LAVDRAGNVWSWGDNSQQQLGLNSNASSLIPVPV---PG 332
Query: 297 TEEFKQDELNTGGLDDEIKTKD 318
E + E++ GG KD
Sbjct: 333 IEHVR--EISAGGFHSVAMKKD 352
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 68/164 (41%), Gaps = 26/164 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ AGG SLAI G +W WGN T G + P V + +V
Sbjct: 233 LTDVMAIAAGGSHSLAIKQDGTVWAWGNNTY---GTLGDGTRTHRTRPVQVRNL--QHIV 287
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H +A+ AG +SWG N+ QLGL S L P +
Sbjct: 288 AVAGGGYHSLAVDRAGN--------VWSWGDNSQQQLGLNSNASSLIPVPVPGIEH---- 335
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
V E++ G FH+ + + W +G GQ+G GT
Sbjct: 336 -VREISAGGFHSVAMKK--------DGTVWGWGYNSGGQIGDGT 370
>gi|156406658|ref|XP_001641162.1| predicted protein [Nematostella vectensis]
gi|156228299|gb|EDO49099.1| predicted protein [Nematostella vectensis]
Length = 596
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 128/285 (44%), Gaps = 28/285 (9%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
V G +LA+ G ++ WG+ G L FTP + + +VAC
Sbjct: 245 VACGATHTLALSKDGEVFSWGS---GYGGRLGQGHLRDRFTPIRICGLESLNLTQVACNE 301
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
H A+ + + +S+G N+ GQLG+ E +L I+ + S + V
Sbjct: 302 FHSAAVCACSKQG-----ALFSFGENDYGQLGI--PEDKLLTSYIQCVSSLSEHKISRVA 354
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP---EQVKELPQYVYL 183
CGSFH+A L W +G E+GQLG+G S +P E +L ++ +
Sbjct: 355 CGSFHSAALAE--------HGSLWLWGCNESGQLGNGNYTSTSLPSLLEAGNDL-RHDAV 405
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+ V CG H++ ++ G ++ G L A L N+ + + P F
Sbjct: 406 MEVACGDQHSAFITKKGRMFCCGDNTYGQL--GAHLNDNQDDHVTYNVAVRVRVP--TDF 461
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ V VACG +HT +VTD G ++++WGRG+ G LG G ++ P
Sbjct: 462 R-CVHVACGDSHTAVVTDGG-EIFTWGRGKGGRLGHGDNLNRHLP 504
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 91/207 (43%), Gaps = 35/207 (16%)
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
H + +VACGS H AL G + WG N +GQLG G+ S P ++E N
Sbjct: 348 HKISRVACGSFHSAALAEHGSLWL--------WGCNESGQLGNGNYTSTSLPSLLEAGND 399
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGH--GTTQSALVPE 172
AV EV CG H+A +T + R F G+N GQLG Q V
Sbjct: 400 LRHDAVMEVACGDQHSAFITKKGR----------MFCCGDNTYGQLGAHLNDNQDDHVTY 449
Query: 173 QVK---ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
V +P V V CG HT+VV+ G++++WG KG L +L R+ +
Sbjct: 450 NVAVRVRVPTDFRCVHVACGDSHTAVVTDGGEIFTWGRGKGGRLGHGDNLNRHLP----T 505
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHT 256
I I G H V+CG AHT
Sbjct: 506 EIEIGMEGKH------VRGVSCGRAHT 526
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 89/200 (44%), Gaps = 25/200 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW---DFHGHTV 59
+I V G S A+ G+LW+WG +S G + S+ PS + D V
Sbjct: 349 KISRVACGSFHSAALAEHGSLWLWG---CNESGQLGNGNYTSTSLPSLLEAGNDLRHDAV 405
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG--LGD-RESRLRPKIIETFNQ 116
++VACG +H SA T KG C G N GQLG L D ++ + +
Sbjct: 406 MEVACGDQH-----SAFITKKGRMFCC---GDNTYGQLGAHLNDNQDDHVTYNVAVRVRV 457
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ + V CG HTA++T D E W G G+ G+LGHG + +P +++
Sbjct: 458 PTDFRCVHVACGDSHTAVVT------DGGEIFTW--GRGKGGRLGHGDNLNRHLPTEIEI 509
Query: 177 LPQYVYLVSVDCGLFHTSVV 196
+ ++ V CG HT+
Sbjct: 510 GMEGKHVRGVSCGRAHTACT 529
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 95/212 (44%), Gaps = 34/212 (16%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIET-FNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y+WG NG LG G+ P ++E +D + +V CG+ HT L+
Sbjct: 210 YTWGEGTNGMLGHGEDTQEAHPHVVEALLGKD----IRKVACGATHTLALSK-------- 257
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV---SSAGDV 202
+ +++G G G+LG G + P ++ L + + L V C FH++ V S G +
Sbjct: 258 DGEVFSWGSGYGGRLGQGHLRDRFTPIRICGL-ESLNLTQVACNEFHSAAVCACSKQGAL 316
Query: 203 WSWGMEK--GLGLCPNASLTRN-EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLV 259
+S+G LG+ + LT + ++S IS +VACG+ H+ +
Sbjct: 317 FSFGENDYGQLGIPEDKLLTSYIQCVSSLSEHKIS-------------RVACGSFHSAAL 363
Query: 260 TDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ G LW WG SG LG G P+++
Sbjct: 364 AEHG-SLWLWGCNESGQLGNGNYTSTSLPSLL 394
>gi|383852591|ref|XP_003701810.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like
[Megachile rotundata]
Length = 1135
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 133/299 (44%), Gaps = 54/299 (18%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTVVKV 62
V G +LA++ G L+ WG S+ EG L S P V VV+V
Sbjct: 166 VACGAHHTLAVNEWGQLFSWG------SNAEGQLGLNSKNLIECVPHMVRALGTSVVVQV 219
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPWA 121
ACG HV+AL + G+ Y SWG+N++GQLGLG D ++ ++PK+I + P A
Sbjct: 220 ACGINHVLALTNNGKLY--------SWGSNSDGQLGLGTDVKNEIKPKLISSL-AGVPIA 270
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKELPQ 179
+TCG +H+ ++ FG G+N GQLG T++ +P Q++ L Q
Sbjct: 271 F--ITCGGYHSMAISKSGA----------VFGWGKNTFGQLGLNDTRNRNLPRQLQTL-Q 317
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
+ CG + ++ G V++ G + G G N L R S +
Sbjct: 318 NAKVCYAACGEEFSVFLTVDGGVFTCGAGMYGQLGHGNTSNEILPRQVMELMGSTV---- 373
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
Q++CG HT+ + ++++WG G +G LG T P +V P
Sbjct: 374 -----------TQISCGKRHTLGLVPSRGRVYAWGLGGAGQLGNNITRSVATPQVVHGP 421
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 41/240 (17%)
Query: 50 PVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG--DRESRLR 107
P+ + + + ++AC E ++A+ + T +++ C WG+ +G+LGLG + E+ L
Sbjct: 48 PIKNANRNKKRRLAC--EPIIAVEYS--TVTDKNMFC--WGSTIHGELGLGGIEDENILV 101
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH--GTT 165
P+ ++ F + + + ++ CG +T L+T + ++ G + GQLGH G
Sbjct: 102 PRELD-FQKAT--EIEQIACGENYTVLITR--------DGQVYSCGNNDYGQLGHEKGRK 150
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNE 223
+ L+P L +V+ V CG HT V+ G ++SWG E LGL +
Sbjct: 151 RLQLIP----GLDAFVF-KKVACGAHHTLAVNEWGQLFSWGSNAEGQLGLNSKNLI---- 201
Query: 224 AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
P ++ G VQVACG H + +T++G KL+SWG G LG G +
Sbjct: 202 ---ECVPHMVRALGT-----SVVVQVACGINHVLALTNNG-KLYSWGSNSDGQLGLGTDV 252
>gi|345494033|ref|XP_001605647.2| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Nasonia
vitripennis]
Length = 4752
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 131/290 (45%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG D G + ++ P + G +V +ACG
Sbjct: 3985 AVNSGGKHCLALSSEGHVYSWGE---GDDGKLGHGNRITYDRPKLIEALLGTEIVDIACG 4041
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H A+ SAG Y+WG G+LG GD + +L+P ++ + V +V
Sbjct: 4042 GHHSAAISSAG--------WLYTWGKGRYGRLGHGDSDDQLKPTVVTALQG---YKVIDV 4090
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + VP +++ L + +V
Sbjct: 4091 ACGSGDAQTLCVTDDDN------VWSWGDGDYGKLGRGGSDGCKVPMKIESLAG-LGVVK 4143
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + + R A+ G
Sbjct: 4144 VECGSQFSVALTRSGAVYTWG--KGDYHRLGHGTDDHVRRPRKVSAL----------QGK 4191
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K V +A G+ H V +D G ++++WG G LG G T +P +V
Sbjct: 4192 KI---VSIATGSLHCVACSDKG-EVYTWGDNDEGQLGDGTTHAQQSPRLV 4237
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 132/292 (45%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + VS P + + +ACG
Sbjct: 3013 AVHSGGKHALALTQDGKVFSWGE---GEDGKLGHGNRVSLDKPRLIEALKSKRIRDIACG 3069
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S GE Y+WG G+LG GD + L+PK+++ V +V
Sbjct: 3070 SGHSAAIASNGE--------LYTWGLGEYGRLGHGDTTTHLKPKLVDALVGQR---VIQV 3118
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + +++G G+ G+LG G + P V L + +
Sbjct: 3119 ACGSRDAQTMALTE--------DGSVYSWGDGDFGKLGRGGSDGCYSPLPVDRL-NGLGV 3169
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ G+VW+WG KG LG + + R P L+ G
Sbjct: 3170 VQVECGAQFSLALTKYGEVWTWG--KGDYFRLGHGNDHHVRR--------PTLV--EGLR 3217
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K V VA GA H + VTD G ++++WG G G G T+ P++V
Sbjct: 3218 GKKV---VHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGNGSTMVNRKPSLV 3265
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 113/247 (45%), Gaps = 34/247 (13%)
Query: 48 PSPVWDFHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P P+ + + KVA G +H +AL G+ + SWG +G+LG G+R S
Sbjct: 2998 PKPIPFLSQYIIKKVAVHSGGKHALALTQDGKVF--------SWGEGEDGKLGHGNRVSL 3049
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
+P++IE + ++ CGS H+A + +T+GLGE G+LGHG T
Sbjct: 3050 DKPRLIEALKSKR---IRDIACGSGHSAAIASNGE--------LYTWGLGEYGRLGHGDT 3098
Query: 166 QSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA 224
+ L P+ V L Q V V+ T ++ G V+SWG + G L R +
Sbjct: 3099 TTHLKPKLVDALVGQRVIQVACGSRDAQTMALTEDGSVYSWG-DGDFG-----KLGRGGS 3152
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
SP+ + G VQV CGA ++ +T G ++W+WG+G LG G
Sbjct: 3153 DGCYSPLPVDRLNGLG-----VVQVECGAQFSLALTKYG-EVWTWGKGDYFRLGHGNDHH 3206
Query: 285 FFAPAIV 291
P +V
Sbjct: 3207 VRRPTLV 3213
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 110/262 (41%), Gaps = 44/262 (16%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFH 55
++I + GG S AI +AG L+ WG +G + + P+ V
Sbjct: 4033 TEIVDIACGGHHSAAISSAGWLYTWG---------KGRYGRLGHGDSDDQLKPTVVTALQ 4083
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G+ V+ VACGS L +D +SWG + G+LG G + P IE+
Sbjct: 4084 GYKVIDVACGSGDAQTLCVT------DDDNVWSWGDGDYGKLGRGGSDGCKVPMKIESL- 4136
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
+ V +V CGS + LT +T+G G+ +LGHGT P +V
Sbjct: 4137 --AGLGVVKVECGSQFSVALTR--------SGAVYTWGKGDYHRLGHGTDDHVRRPRKVS 4186
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q +VS+ G H S G+V++WG + GD + S
Sbjct: 4187 AL-QGKKIVSIATGSLHCVACSDKGEVYTWGDND-----------EGQLGDGTTHAQQSP 4234
Query: 236 NGPHGPKFQDPVQVACGAAHTV 257
H + ++ +VACG+AHT+
Sbjct: 4235 RLVHALQGKNITRVACGSAHTL 4256
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 101/223 (45%), Gaps = 34/223 (15%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V G +H +AL S G Y SWG ++G+LG G+R + RPK+IE
Sbjct: 3984 VAVNSGGKHCLALSSEGHVY--------SWGEGDDGKLGHGNRITYDRPKLIEALLGTE- 4034
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ ++ CG H+A ++ +T+G G G+LGHG + L P V L
Sbjct: 4035 --IVDIACGGHHSAAISS--------AGWLYTWGKGRYGRLGHGDSDDQLKPTVVTALQG 4084
Query: 180 YVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
Y ++ V CG T V+ +VWSWG + G L R + P+ I
Sbjct: 4085 Y-KVIDVACGSGDAQTLCVTDDDNVWSWG-DGDYG-----KLGRGGSDGCKVPMKIESLA 4137
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
G V+V CG+ +V +T G +++WG+G LG G
Sbjct: 4138 GLG-----VVKVECGSQFSVALTRSG-AVYTWGKGDYHRLGHG 4174
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 121/275 (44%), Gaps = 37/275 (13%)
Query: 17 IDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAG 76
+ A+++WG L D GG P + +A GS+ + + G
Sbjct: 2918 VQQNAAVYVWG---LNDKDQLGGLKGSKIKLPVHSEVLSKLKPIHIAGGSKTLFVVSQEG 2974
Query: 77 ETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLT 136
+ Y+ G NG+LGLGD + PK I +Q V V G H LT
Sbjct: 2975 K--------LYACGEGTNGRLGLGDNNNVGEPKPIPFLSQYIIKKV-AVHSGGKHALALT 3025
Query: 137 HRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
+ +++G GE+G+LGHG S P ++ L + + + CG H++ +
Sbjct: 3026 Q--------DGKVFSWGEGEDGKLGHGNRVSLDKPRLIEAL-KSKRIRDIACGSGHSAAI 3076
Query: 197 SSAGDVWSWGM-EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA-- 253
+S G++++WG+ E G L + + P L+ Q +QVACG+
Sbjct: 3077 ASNGELYTWGLGEYG-------RLGHGDTTTHLKPKLVD-----ALVGQRVIQVACGSRD 3124
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
A T+ +T+DG ++SWG G G LG G + ++P
Sbjct: 3125 AQTMALTEDG-SVYSWGDGDFGKLGRGGSDGCYSP 3158
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 110/253 (43%), Gaps = 47/253 (18%)
Query: 48 PSPVWDFHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P V+ F VV++A +H +AL + G + YSWG + G+LG GD S
Sbjct: 491 PQSVYGF-ADDVVQIASHPDGKHYLALTTKG--------IVYSWGNGDGGRLGHGDSFSC 541
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
P++IE + + V + CGS ++A ++ ++L T+G G G+LGHG
Sbjct: 542 DEPQVIEVLSDRT---VTYIACGSTYSAAIS---STGELL-----TWGRGSYGRLGHGIC 590
Query: 166 QSALVPEQVKELPQY-VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA 224
+P V L + V V+ G T V+++G V+SWG
Sbjct: 591 DDISIPTVVTALNGHTVTHVACGSGDSQTLCVTNSGIVFSWG-----------------D 633
Query: 225 GDAISPILISGNGPHGPKF------QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
GD +G PK Q+ V+V CG + +T G ++++WG+G LG
Sbjct: 634 GDYGKLGRGGSDGSKLPKIVDKLLDQNVVKVFCGGQFSAALTAHG-EVYTWGKGDHYRLG 692
Query: 279 TGKTIDFFAPAIV 291
G P +V
Sbjct: 693 HGNEEHVRFPKLV 705
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 29/217 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT-PSPVWDFHGHTVVKV 62
+ + G S AI + G L WG S G + + P+ V +GHTV V
Sbjct: 555 VTYIACGSTYSAAISSTGELLTWGR----GSYGRLGHGICDDISIPTVVTALNGHTVTHV 610
Query: 63 ACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
ACGS + + ++G + +SWG + G+LG G + PKI++ +
Sbjct: 611 ACGSGDSQTLCVTNSG--------IVFSWGDGDYGKLGRGGSDGSKLPKIVDKLLDQN-- 660
Query: 121 AVYEVTCG-SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CG F AL H + +T+G G++ +LGHG + P+ V+ L +
Sbjct: 661 -VVKVFCGGQFSAALTAHGE---------VYTWGKGDHYRLGHGNEEHVRFPKLVEGL-R 709
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPN 216
+ + G H ++ V+ WG + P+
Sbjct: 710 NKKVRDLSVGNLHILAITEDQLVYGWGRNDACQIDPS 746
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 30/209 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG + P E+ + P + G T +
Sbjct: 3897 YGWGHNHRGQLGGLEGAKVKLPLPCESLSALRPIQL----AGGEQTLFAV-------TAD 3945
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWS 204
+ G G G+LG G S +VP ++ + Q+V++ V+V+ G H +SS G V+S
Sbjct: 3946 GKVYATGYGALGRLGTGGVDSVMVPTLLESI-QHVFIKKVAVNSGGKHCLALSSEGHVYS 4004
Query: 205 WGM--EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG + LG + R + +A+ I V +ACG H+ ++
Sbjct: 4005 WGEGDDGKLGHGNRITYDRPKLIEALLGTEI-------------VDIACGGHHSAAISSA 4051
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ L++WG+GR G LG G + D P +V
Sbjct: 4052 GW-LYTWGKGRYGRLGHGDSDDQLKPTVV 4079
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G SLA+ G +W WG D G + P+ V G VV VA
Sbjct: 3169 VVQVECGAQFSLALTKYGEVWTWGK---GDYFRLGHGNDHHVRRPTLVEGLRGKKVVHVA 3225
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ AG+ Y+WG N++GQ G G +P ++ V
Sbjct: 3226 VGALHCLAVTDAGQV--------YAWGDNDHGQQGNGSTMVNRKPSLVHNLEDAK---VN 3274
Query: 124 EVTCGSFHT 132
V CGS H+
Sbjct: 3275 RVACGSSHS 3283
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 23/180 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
++A+ G+++ WG+ D G ++P PV +G VV+V CG++ +AL
Sbjct: 3127 TMALTEDGSVYSWGD---GDFGKLGRGGSDGCYSPLPVDRLNGLGVVQVECGAQFSLALT 3183
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
GE ++WG + +LG G+ RP ++E V V G+ H
Sbjct: 3184 KYGEV--------WTWGKGDYFRLGHGNDHHVRRPTLVEGLRGKK---VVHVAVGALHCL 3232
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
+T D + W G ++GQ G+G+T P V L + + V CG H+
Sbjct: 3233 AVT------DAGQVYAW--GDNDHGQQGNGSTMVNRKPSLVHNL-EDAKVNRVACGSSHS 3283
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G + LA+ +AG ++ WG+ D +G S + + PS V + V +V
Sbjct: 3220 KVVHVAVGALHCLAVTDAGQVYAWGD---NDHGQQGNGSTMVNRKPSLVHNLEDAKVNRV 3276
Query: 63 ACGSEHVVALVSAGE-TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
ACGS H +A V + T ++ V + + GQ LG + + ++
Sbjct: 3277 ACGSSHSIAWVLTDQPTLGNQEPVTFPTAKDPLGQATLGFTQDKTETNVV 3326
>gi|405970894|gb|EKC35758.1| X-linked retinitis pigmentosa GTPase regulator-like protein
[Crassostrea gigas]
Length = 1288
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 113/253 (44%), Gaps = 34/253 (13%)
Query: 59 VVKVACGSEHVVAL---------------VSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
V+ V+CG EH VAL V G T+ + YSWG +GQLG G+ E
Sbjct: 757 VLSVSCGGEHTVALTQQGVYGWGSSKYGQVGTGTTHIYSRPIVYSWGWGVHGQLGHGNIE 816
Query: 104 SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
L P + + V + G H+ +LT + + ++FG G GQLG G
Sbjct: 817 DALTPTKVTFL---TSLNVSHIQAGHCHSLVLTE--------QGVVYSFGCGFFGQLGIG 865
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK-GLGLCPNASLTRN 222
+ + VP +V LP+ + +V+ FH V+ + V++WG L +A+
Sbjct: 866 NNRKSSVPVKVHTLPEKIAIVATR--YFHNVAVTHSNKVYTWGCHPYNLRFVAHAARKAR 923
Query: 223 EA----GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
+A GD + L+ G +VA G++H +L+T DG ++SWGR G +G
Sbjct: 924 QAGKFMGDPVERYLLPEVVDTGYVHGRITKVAVGSSHGLLMTLDG-DVYSWGRNAEGQIG 982
Query: 279 TGKTIDFFAPAIV 291
+ P I+
Sbjct: 983 NNSKYEMKQPNII 995
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 20/107 (18%)
Query: 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
HG + KVA GS H + + G+ Y SWG N GQ+G + +P II
Sbjct: 948 HGR-ITKVAVGSSHGLLMTLDGDVY--------SWGRNAEGQIGNNSKYEMKQPNIITQI 998
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
N + + G F+ + T E + W +G + GQLG
Sbjct: 999 NDRQ--MAHLASGGEFNVTMDT---------EGLVWVWGKNDFGQLG 1034
>gi|348525468|ref|XP_003450244.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like
[Oreochromis niloticus]
Length = 536
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 111/241 (46%), Gaps = 31/241 (12%)
Query: 42 LVSSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG 100
L S+ P + G +V ++ G+ HVV + GE Y +WG N QLG G
Sbjct: 68 LQSTIEPRRIDVLCGKKIVSLSYGTGPHVVIATADGEVY--------AWGHNGYSQLGNG 119
Query: 101 DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQL 160
L P ++ T N S V EV CGS HT LT + + +G +GQ+
Sbjct: 120 TTNHGLTPALVST-NLLSK-RVTEVACGSHHTIALT--------TDGEVYAWGYNNSGQV 169
Query: 161 GHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
G G+T + P +V Q +V++ CG + V G+++ WG N L
Sbjct: 170 GSGSTANQPTPRRVSSCLQNKVVVNIACGQLCSMAVLDNGEIYGWGYN------CNGQLG 223
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
G+ +P I+ + + VQVACG AHT+ +TD+G+ +++WG G LGTG
Sbjct: 224 LGNNGNQQTPCRIAA-----LQGVNIVQVACGYAHTLALTDEGF-VYAWGANSYGQLGTG 277
Query: 281 K 281
Sbjct: 278 N 278
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWG-NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+ ++ G + S+A+ + G ++ WG NC G + TP + G +V+V
Sbjct: 192 VVNIACGQLCSMAVLDNGEIYGWGYNCNGQLGLGNNG----NQQTPCRIAALQGVNIVQV 247
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG H +AL G Y+WGAN+ GQLG G++ ++ P I N D V
Sbjct: 248 ACGYAHTLALTDEG--------FVYAWGANSYGQLGTGNKSNQALPTPI---NTDKERIV 296
Query: 123 YEVTCGSFHTA 133
C + HT+
Sbjct: 297 EVAACHTSHTS 307
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 152 FGLGEN--GQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF-HTSVVSSAGDVWSWGME 208
F LG N G LG G QS + P ++ L +VS+ G H + ++ G+V++WG
Sbjct: 53 FALGTNCSGCLGLGDLQSTIEPRRIDVLCGK-KIVSLSYGTGPHVVIATADGEVYAWGHN 111
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L ++P L+S N + +VACG+ HT+ +T DG ++++
Sbjct: 112 G------YSQLGNGTTNHGLTPALVSTN----LLSKRVTEVACGSHHTIALTTDG-EVYA 160
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG SG +G+G T + P
Sbjct: 161 WGYNNSGQVGSGSTANQPTP 180
>gi|357520083|ref|XP_003630330.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
gi|355524352|gb|AET04806.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
Length = 279
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 113/234 (48%), Gaps = 33/234 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN-QD 117
V+ ++ G+ H VAL++ ++VC SWG +GQLG GD + RL P + F+ QD
Sbjct: 14 VLLISAGASHTVALLTG-------NVVC-SWGRGEDGQLGHGDTDDRLLPTKLSAFDGQD 65
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ VTCG+ +T + K D+ +++G G+ G+LGHG +P ++ L
Sbjct: 66 ----IVSVTCGADYT--VARSKSGKDV-----YSWGWGDFGRLGHGDPSDLFIPHPIRAL 114
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
Q + + + CG H V+ V SWG + N L D+ P I
Sbjct: 115 -QGLRIKQISCGDCHCLAVTMENKVLSWGRNQ------NGELGLGTTKDSHVPQKILAF- 166
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G + + VA GA H+V +T+DG L+ WG GR G LG G T D P V
Sbjct: 167 -EGIRIK---MVAAGAEHSVAITEDG-DLYGWGWGRYGNLGLGDTNDRLIPEKV 215
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 113/248 (45%), Gaps = 36/248 (14%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P+ + F G +V V CG+++ VA + G+D+ YSWG + G+LG GD
Sbjct: 53 LLPTKLSAFDGQDIVSVTCGADYTVA-----RSKSGKDV--YSWGWGDFGRLGHGDPSDL 105
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
P I + +++CG H +T +E+ ++G +NG+LG GTT
Sbjct: 106 FIPHPIRALQG---LRIKQISCGDCHCLAVT--------MENKVLSWGRNQNGELGLGTT 154
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNE 223
+ + VP+++ + + + V G H+ ++ GD+ W WG LGL +
Sbjct: 155 KDSHVPQKILAF-EGIRIKMVAAGAEHSVAITEDGDLYGWGWGRYGNLGL--------GD 205
Query: 224 AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
D + P ++ +G V V+CG HT+ ++ G L++ G + G LG G
Sbjct: 206 TNDRLIPEKVNIDG------DKIVMVSCGWRHTISISSSG-GLYTHGWSKYGQLGHGDFE 258
Query: 284 DFFAPAIV 291
D P V
Sbjct: 259 DCLVPRKV 266
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 88/209 (42%), Gaps = 29/209 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGA---LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I SV G ++A +G W WG D G F P P+ G +
Sbjct: 66 IVSVTCGADYTVARSKSGKDVYSWGWG-----DFGRLGHGDPSDLFIPHPIRALQGLRIK 120
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+++CG H +A+ + SWG N NG+LGLG + P+ I F
Sbjct: 121 QISCGDCHCLAVTMENKVL--------SWGRNQNGELGLGTTKDSHVPQKILAFEGIR-- 170
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ V G+ H+ +T + + +G G G LG G T L+PE+V
Sbjct: 171 -IKMVAAGAEHSVAITE--------DGDLYGWGWGRYGNLGLGDTNDRLIPEKVNIDGDK 221
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+ +VS CG HT +SS+G +++ G K
Sbjct: 222 IVMVS--CGWRHTISISSSGGLYTHGWSK 248
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 24/185 (12%)
Query: 110 IIETFNQDSPWAVYEVTCGSFHT-ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA 168
+I + SP V ++ G+ HT ALLT ++ ++G GE+GQLGHG T
Sbjct: 2 MIMSEKSASPPHVLLISAGASHTVALLT---------GNVVCSWGRGEDGQLGHGDTDDR 52
Query: 169 LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAG-DVWSWGMEKGLGLCPNASLTRNEAGDA 227
L+P ++ +VSV CG +T S +G DV+SWG L + D
Sbjct: 53 LLPTKLSAFDGQ-DIVSVTCGADYTVARSKSGKDVYSWGWGD------FGRLGHGDPSDL 105
Query: 228 ISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
P I G + + Q++CG H + VT + K+ SWGR ++G LG G T D
Sbjct: 106 FIPHPI--RALQGLRIK---QISCGDCHCLAVTMEN-KVLSWGRNQNGELGLGTTKDSHV 159
Query: 288 PAIVL 292
P +L
Sbjct: 160 PQKIL 164
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 59/133 (44%), Gaps = 20/133 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES 104
S P + F G + VA G+EH VA+ G+ Y WG G LGLGD
Sbjct: 157 SHVPQKILAFEGIRIKMVAAGAEHSVAITEDGDLY--------GWGWGRYGNLGLGDTND 208
Query: 105 RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
RL P E N D + V+CG HT ++ +T G + GQLGHG
Sbjct: 209 RLIP---EKVNIDGD-KIVMVSCGWRHTISISS--------SGGLYTHGWSKYGQLGHGD 256
Query: 165 TQSALVPEQVKEL 177
+ LVP +V+ L
Sbjct: 257 FEDCLVPRKVQAL 269
>gi|328784403|ref|XP_395217.4| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Apis
mellifera]
Length = 1081
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 128/296 (43%), Gaps = 54/296 (18%)
Query: 10 GGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTVVKVACG 65
G +LAI+ G L+ WG S+TEG L S +P V VV++ACG
Sbjct: 119 GAYHTLAINEWGQLFSWG------SNTEGQLGLNSKNFMESSPRMVKTLGTSVVVQIACG 172
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPWAVYE 124
+H AL + GE YSWG+N+ GQLGLG D + ++PK I F P A
Sbjct: 173 MKHAFALTNNGE--------LYSWGSNSEGQLGLGTDTKYEIKPKFISAF-IGIPIAF-- 221
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKELPQYVY 182
+ CG +H+ ++ FG G+N GQLG TQ +P Q++ L Q
Sbjct: 222 IACGGYHSIAISKSGA----------VFGWGKNTFGQLGLNDTQDRNLPCQLQTL-QNAK 270
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ CG + ++ G V++ G + G G N L R S +
Sbjct: 271 ICYAACGEEFSVFLTVDGGVFTCGAGMYGQLGHGSNSNEILPRQVMELMGSTV------- 323
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
Q++CG HT+ + ++++WG G +G LG T P +V P
Sbjct: 324 --------TQISCGKRHTLALVPSRGRVYAWGLGGAGQLGNHSTRSVTTPQVVHGP 371
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 101/208 (48%), Gaps = 37/208 (17%)
Query: 79 YKGEDLVCYSWGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLT 136
+K +D+ C WG+ +G+LGLG + E+ L P+ ++ F + + + ++ CG +T ++T
Sbjct: 23 HKKKDMFC--WGSTIHGELGLGGIEDENILIPRELD-FKKAA--EIQQIACGENYTVVIT 77
Query: 137 HRKRPNDMLESMCWTFGLGENGQLGH--GTTQSALVPEQVKELPQYVYLVSVDCGLFHTS 194
++ G + GQLGH G + L+P L +V+ + CG +HT
Sbjct: 78 QIGE--------IYSCGNNDYGQLGHEKGRKRLQLIPG----LDAFVFKKAA-CGAYHTL 124
Query: 195 VVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACG 252
++ G ++SWG E LGL + SP ++ G VQ+ACG
Sbjct: 125 AINEWGQLFSWGSNTEGQLGLNSKNFMES-------SPRMVKTLGT-----SVVVQIACG 172
Query: 253 AAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
H +T++G +L+SWG G LG G
Sbjct: 173 MKHAFALTNNG-ELYSWGSNSEGQLGLG 199
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 102/233 (43%), Gaps = 38/233 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ ++ACG + V + GE YS G N+ GQ LG + R R ++I +
Sbjct: 63 IQQIACGENYTVVITQIGEI--------YSCGNNDYGQ--LGHEKGRKRLQLIPGLD--- 109
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKEL 177
+ + CG++HT + N+ + W G GQLG + P VK L
Sbjct: 110 AFVFKKAACGAYHTLAI------NEWGQLFSW--GSNTEGQLGLNSKNFMESSPRMVKTL 161
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISG 235
V +V + CG+ H +++ G+++SWG E LGL + T+ E I P IS
Sbjct: 162 GTSV-VVQIACGMKHAFALTNNGELYSWGSNSEGQLGL---GTDTKYE----IKPKFISA 213
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
F +ACG H++ ++ G ++ WG+ G LG T D P
Sbjct: 214 FIGIPIAF-----IACGGYHSIAISKSG-AVFGWGKNTFGQLGLNDTQDRNLP 260
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 29/175 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS---FTPSPVWDFHGHTVV 60
I + GG S+AI +GA++ WG +T G L + P + +
Sbjct: 219 IAFIACGGYHSIAISKSGAVFGWG------KNTFGQLGLNDTQDRNLPCQLQTLQNAKIC 272
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
ACG E V L G ++ GA GQLG G + + P+ + +
Sbjct: 273 YAACGEEFSVFLTVDGGV--------FTCGAGMYGQLGHGSNSNEILPRQVMELMGST-- 322
Query: 121 AVYEVTCGSFHT-ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
V +++CG HT AL+ R R + +GLG GQLG+ +T+S P+ V
Sbjct: 323 -VTQISCGKRHTLALVPSRGR--------VYAWGLGGAGQLGNHSTRSVTTPQVV 368
>gi|348688463|gb|EGZ28277.1| hypothetical protein PHYSODRAFT_309181 [Phytophthora sojae]
Length = 4167
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 123/260 (47%), Gaps = 40/260 (15%)
Query: 49 SPVWDFHGHTV--VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
+PV G + V A G EH++A+ S G YSWG N+ GQLGLG S+
Sbjct: 547 TPVRALSGIVINMVAAANGCEHMLAVASDG--------AVYSWGYNDRGQLGLGSTISKS 598
Query: 107 R-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
P++I++ + + + H+A+++ ++L FG+ + GQLG T
Sbjct: 599 HTPRMIDSLREK--YHITTAAVSYHHSAVVSSN---GELL-----MFGMNDCGQLGLDHT 648
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTR 221
Q P+ V L V + V CGL+HT ++S G+V+S+G + GLG N +
Sbjct: 649 QHQHTPQLVDSLSSQV-ITEVACGLYHTIAITSGGEVYSFGKNDYGQLGLGHARNMKV-- 705
Query: 222 NEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
P L+ + G + V V+CG HTV +++ G KL +WGR G LG G
Sbjct: 706 --------PTLVKTS--LGESDEKIVAVSCGYYHTVTISEKG-KLITWGRNDYGQLGIGS 754
Query: 282 TIDFFAPAIVLWPPLTEEFK 301
D A + PL+ + K
Sbjct: 755 K-DHKNSAQYVPLPLSSKIK 773
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 20/193 (10%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S + + G L M+G + D G TP V + +VACG H +A+
Sbjct: 623 SAVVSSNGELLMFG---MNDCGQLGLDHTQHQHTPQLVDSLSSQVITEVACGLYHTIAIT 679
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S GE Y S+G N+ GQLGLG + P +++T +S + V+CG +HT
Sbjct: 680 SGGEVY--------SFGKNDYGQLGLGHARNMKVPTLVKTSLGESDEKIVAVSCGYYHTV 731
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ + + T+G + GQLG G+ + V LP + + CG +HT
Sbjct: 732 TISEKGK--------LITWGRNDYGQLGIGSKDHKNSAQYVP-LPLSSKIKTASCGCYHT 782
Query: 194 SVVSSAGDVWSWG 206
++ S G V +G
Sbjct: 783 LILMSNGRVMVFG 795
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 39/244 (15%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
F + +A G+E V+A+V +D ++ G N +GQ G G E R+ II T
Sbjct: 499 FSAKAIRDIAGGNE-VLAVVM-------KDGAVFTCGLNKSGQCGNGTFEERV---IIAT 547
Query: 114 FNQDSPWAVYEVTC---GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS-AL 169
+ V + G H + + +++G + GQLG G+T S +
Sbjct: 548 PVRALSGIVINMVAAANGCEHMLAVAS--------DGAVYSWGYNDRGQLGLGSTISKSH 599
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDA 227
P + L + ++ + H++VVSS G++ +GM LGL + D+
Sbjct: 600 TPRMIDSLREKYHITTAAVSYHHSAVVSSNGELLMFGMNDCGQLGLDHTQHQHTPQLVDS 659
Query: 228 ISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
+S +I+ +VACG HT+ +T G +++S+G+ G LG G +
Sbjct: 660 LSSQVIT-------------EVACGLYHTIAITSGG-EVYSFGKNDYGQLGLGHARNMKV 705
Query: 288 PAIV 291
P +V
Sbjct: 706 PTLV 709
>gi|312792299|ref|YP_004025222.1| regulator of chromosome condensation rcc1 [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179439|gb|ADQ39609.1| regulator of chromosome condensation RCC1 [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 754
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 117/291 (40%), Gaps = 41/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + ++ AG SLA+ G +WMW + E ++P PV VV
Sbjct: 194 LKDVVAIAAGKDYSLALKKDGTVWMW---EYKYNYYEQLRRGADEYSPVPVQVEGLKDVV 250
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +AL +D ++WG N GQLG G E P ++
Sbjct: 251 AIAAGRYHSLAL--------KKDGTVWAWGNNYYGQLGNGKSEDSYDPVQVKNLKD---- 298
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G H+ L + W +G E GQLG+ ++ VP Q K L
Sbjct: 299 -VVAIAAGENHSLALKK--------DGTIWAWGDNEWGQLGNSISEKLCVPVQFKSLKD- 348
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V++ G H+ + G VWSWG L + D+ P+ + G
Sbjct: 349 --VVAIAAGCEHSLALKKDGTVWSWGNNY------YGQLGNGNSIDSYVPVQVRG----- 395
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+D V +A G AH++ + DG +W+WG G LG G F P V
Sbjct: 396 --LKDVVAIATGNAHSLALKKDG-TVWAWGNNEFGQLGNGTNKSSFVPVQV 443
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 119/288 (41%), Gaps = 58/288 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + ++ AG SLA+ G +W WG+ +S PV VV
Sbjct: 296 LKDVVAIAAGENHSLALKKDGTIWAWGDNEWGQLGNS-----ISEKLCVPVQFKSLKDVV 350
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G EH +AL +D +SWG N GQLG G+ P +
Sbjct: 351 AIAAGCEHSLAL--------KKDGTVWSWGNNYYGQLGNGNSIDSYVPVQVRGLKD---- 398
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G+ H+ L + W +G E GQLG+GT +S+ VP QVK L
Sbjct: 399 -VVAIATGNAHSLALKK--------DGTVWAWGNNEFGQLGNGTNKSSFVPVQVKGLKD- 448
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V++ G H+ G VW+WG NE G L +G+G +G
Sbjct: 449 --VVAIAAGSDHSLAFKKDGTVWAWG--------------NNEFGQ-----LGNGSGGYG 487
Query: 241 PKFQDPVQ---------VACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
+ PVQ VA G+ H++ + DG +W+WG G+LG
Sbjct: 488 QYYAVPVQVKGLKDVVAVAAGSVHSLALKKDG-TIWAWGSNYHGLLGN 534
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 119/285 (41%), Gaps = 53/285 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNC---PLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ + ++ AG SLA+ G +W WGN L + +E S+ P V +
Sbjct: 246 LKDVVAIAAGRYHSLALKKDGTVWAWGNNYYGQLGNGKSE------DSYDPVQVKNLK-- 297
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +A G H +AL +D ++WG N GQLG E P ++
Sbjct: 298 DVVAIAAGENHSLAL--------KKDGTIWAWGDNEWGQLGNSISEKLCVPVQFKSLKD- 348
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + G H+ L + W++G GQLG+G + + VP QV+ L
Sbjct: 349 ----VVAIAAGCEHSLALKK--------DGTVWSWGNNYYGQLGNGNSIDSYVPVQVRGL 396
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISG 235
+V++ G H+ + G VW+WG + LG N S + P+ + G
Sbjct: 397 KD---VVAIATGNAHSLALKKDGTVWAWGNNEFGQLGNGTNKS--------SFVPVQVKG 445
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+D V +A G+ H++ DG +W+WG G LG G
Sbjct: 446 -------LKDVVAIAAGSDHSLAFKKDG-TVWAWGNNEFGQLGNG 482
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 116/282 (41%), Gaps = 46/282 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + ++ G SLA+ G +W WGN G + SSF P V VV
Sbjct: 396 LKDVVAIATGNAHSLALKKDGTVWAWGNNEF---GQLGNGTNKSSFVPVQVKGLK--DVV 450
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR---ESRLRPKIIETFNQD 117
+A GS+H +A +D ++WG N GQLG G + P ++
Sbjct: 451 AIAAGSDHSLAF--------KKDGTVWAWGNNEFGQLGNGSGGYGQYYAVPVQVKGLKD- 501
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V V GS H+ L + W +G +G LG+ +S VP QVK L
Sbjct: 502 ----VVAVAAGSVHSLALKK--------DGTIWAWGSNYHGLLGNDIERS-FVPVQVKGL 548
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+V++ G H+ V+ G VW+WG L N+ L + P+ I G
Sbjct: 549 KD---VVAIAAGSNHSLVLKKDGTVWAWGEVWFDLLNENSRLVYSSV-----PVQIKG-- 598
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
+D V +A G H++ + DG +W+WG G LG
Sbjct: 599 -----LKDVVAIAAGEHHSLGLKKDG-TVWAWGDNFFGQLGN 634
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 118/291 (40%), Gaps = 44/291 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+ I + AG SLA+ G +W WG TE SS P V VV
Sbjct: 46 NNIIQIAAGNYHSLALKGDGTVWAWGWNHWGQCGTE-----ESSIIPVKVKGL--KDVVA 98
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPW 120
+A G H + L +D ++WG+N +GQLG D E + P ++
Sbjct: 99 IAAGRYHSLTL--------KKDGTVWAWGSNKDGQLGNRDAGEYSIVPVQVKGLKD---- 146
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G ++ L + W +GL E+ Q+ G+ + VP Q+K L
Sbjct: 147 -VVAIAAGDGYSLGLKK--------DGTVWCWGLNESIQVIDGSNKDFSVPFQIKGLKD- 196
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V++ G ++ + G VW W + N D SP+ + G
Sbjct: 197 --VVAIAAGKDYSLALKKDGTVWMWEYKY------NYYEQLRRGADEYSPVPVQVEG--- 245
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+D V +A G H++ + DG +W+WG G LG GK+ D + P V
Sbjct: 246 --LKDVVAIAAGRYHSLALKKDG-TVWAWGNNYYGQLGNGKSEDSYDPVQV 293
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 123/295 (41%), Gaps = 49/295 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ + ++ AG SL + G +W WG + + D S + FS+ F + D
Sbjct: 144 LKDVVAIAAGDGYSLGLKKDGTVWCWGLNESIQVIDGSNKD-FSV--PFQIKGLKD---- 196
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +A G ++ +AL G + + + N QL G E P +E
Sbjct: 197 -VVAIAAGKDYSLALKKDGTVW------MWEYKYNYYEQLRRGADEYSPVPVQVEGLKD- 248
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + G +H+ L + W +G GQLG+G ++ + P QVK L
Sbjct: 249 ----VVAIAAGRYHSLALKK--------DGTVWAWGNNYYGQLGNGKSEDSYDPVQVKNL 296
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+V++ G H+ + G +W+WG + + G++IS L
Sbjct: 297 KD---VVAIAAGENHSLALKKDGTIWAWGDNE-----------WGQLGNSISEKLCV--- 339
Query: 238 PHGPK-FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P K +D V +A G H++ + DG +WSWG G LG G +ID + P V
Sbjct: 340 PVQFKSLKDVVAIAAGCEHSLALKKDG-TVWSWGNNYYGQLGNGNSIDSYVPVQV 393
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 127/325 (39%), Gaps = 76/325 (23%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPD-SSTEGGFSLVSSFTPSPVWDFHGHTV 59
+ + ++ AG SLA G +W WGN + GG+ + PV V
Sbjct: 446 LKDVVAIAAGSDHSLAFKKDGTVWAWGNNEFGQLGNGSGGYG---QYYAVPVQVKGLKDV 502
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V VA GS H +AL +D ++WG+N +G LG D E P ++
Sbjct: 503 VAVAAGSVHSLAL--------KKDGTIWAWGSNYHGLLG-NDIERSFVPVQVKGLKD--- 550
Query: 120 WAVYEVTCGSFHTALL-----------------------------THRKRPNDML----- 145
V + GS H+ +L K D++
Sbjct: 551 --VVAIAAGSNHSLVLKKDGTVWAWGEVWFDLLNENSRLVYSSVPVQIKGLKDVVAIAAG 608
Query: 146 ---------ESMCWTFGLGENGQLGHGTTQS-ALVPEQVKELPQYVYLVSVDCGLFHTSV 195
+ W +G GQLG+ + +LVP QVK L ++++ G +H+
Sbjct: 609 EHHSLGLKKDGTVWAWGDNFFGQLGNSPREKYSLVPVQVKGLKD---ILAIATGEWHSLA 665
Query: 196 VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
+ G VW+WG E G N + +++ + P+ + G +D + ++ G+ H
Sbjct: 666 IKKDGTVWAWG-ENSTGQLGNETSGKDKY--SYVPVQVKG-------IKDVLAISAGSYH 715
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTG 280
++ + DG +W WG G LG G
Sbjct: 716 SLALKKDG-TVWGWGANARGQLGNG 739
>gi|195432783|ref|XP_002064396.1| GK20144 [Drosophila willistoni]
gi|194160481|gb|EDW75382.1| GK20144 [Drosophila willistoni]
Length = 4996
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 136/291 (46%), Gaps = 41/291 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + + P V + VACG
Sbjct: 3118 AVHSGGKHALALTLDGKVFSWGEG---EDGKLGHGNRTTLDKPRLVEALRAKKIRDVACG 3174
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S GE Y +WG G+LG GD ++L+PK + + V +V
Sbjct: 3175 SSHSAAISSQGELY--------TWGLGEYGRLGHGDNATQLKPKQVTAL---AGRRVIQV 3223
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L + + +++G G+ G+LG G ++ + P +++ L + ++
Sbjct: 3224 ACGSRDAQTLALTE------DGAVFSWGDGDFGKLGRGGSEGSATPHEIERL-SGIGVIQ 3276
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ AG+VW+WG KG LG + + + + PI G G
Sbjct: 3277 IECGAQFSLALTRAGEVWTWG--KGDYYRLGHGGDQHVRKPQ------PI----GGLRGR 3324
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ + VA GA H + VTD G ++++WG G G+G T PA+V+
Sbjct: 3325 RV---IHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGSGNTFVNKKPALVI 3371
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 130/290 (44%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ G ++ WG + G + +S P V +G +V +ACG
Sbjct: 4237 AVNSGGKHCLALTTEGEVYAWGEG---EDGKLGHGNRMSYDRPKLVEHLNGMSVADIACG 4293
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+G +WG G+LG GD E +LRPK++E + ++
Sbjct: 4294 SAHSAAITSSGHVL--------TWGKGRYGRLGHGDSEDQLRPKLVEALLG---YRAIDI 4342
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + +P +++ L + ++
Sbjct: 4343 ACGSGDAQTLCITDDDN------VWSWGDGDYGKLGRGGSDGCKLPYKIESLAG-LGVIK 4395
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + R + A+ G
Sbjct: 4396 VECGSQFSVALTKSGAVYTWG--KGDFHRLGHGSVDHVRRPKKVAAL----------QGK 4443
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V +D G ++++WG G LG G P +V
Sbjct: 4444 KI---ISIATGSLHCVACSDAG-EVYTWGDNDEGQLGDGTVTAIQRPRLV 4489
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 113/234 (48%), Gaps = 42/234 (17%)
Query: 54 FHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
H + V KVA G +H +AL G+ + SWG +G+LG G+R + +P+++
Sbjct: 3109 LHQYVVKKVAVHSGGKHALALTLDGKVF--------SWGEGEDGKLGHGNRTTLDKPRLV 3160
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
E + +V CGS H+A ++ + +T+GLGE G+LGHG + L P
Sbjct: 3161 EALRAKK---IRDVACGSSHSAAISS--------QGELYTWGLGEYGRLGHGDNATQLKP 3209
Query: 172 EQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
+QV L ++ V CG T ++ G V+SWG + G L R + + +
Sbjct: 3210 KQVTALAGR-RVIQVACGSRDAQTLALTEDGAVFSWG-DGDFG-----KLGRGGSEGSAT 3262
Query: 230 PILI---SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
P I SG G +Q+ CGA ++ +T G ++W+WG+G LG G
Sbjct: 3263 PHEIERLSGIG--------VIQIECGAQFSLALTRAG-EVWTWGKGDYYRLGHG 3307
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 106/233 (45%), Gaps = 32/233 (13%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V G +H +AL + GE Y +WG +G+LG G+R S RPK++E N S
Sbjct: 4236 VAVNSGGKHCLALTTEGEVY--------AWGEGEDGKLGHGNRMSYDRPKLVEHLNGMS- 4286
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V ++ CGS H+A +T T+G G G+LGHG ++ L P+ V+ L
Sbjct: 4287 --VADIACGSAHSAAITS--------SGHVLTWGKGRYGRLGHGDSEDQLRPKLVEALLG 4336
Query: 180 YVYL-VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Y + ++ G T ++ +VWSWG + G L R + P I
Sbjct: 4337 YRAIDIACGSGDAQTLCITDDDNVWSWG-DGDYG-----KLGRGGSDGCKLPYKIESLAG 4390
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G ++V CG+ +V +T G +++WG+G LG G P V
Sbjct: 4391 LG-----VIKVECGSQFSVALTKSG-AVYTWGKGDFHRLGHGSVDHVRRPKKV 4437
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 19/143 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G S+A+ +GA++ WG D G S+ P V G ++ +A
Sbjct: 4393 VIKVECGSQFSVALTKSGAVYTWGKG---DFHRLGHGSVDHVRRPKKVAALQGKKIISIA 4449
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H VA AGE Y+WG N+ GQLG G + RP+++ +
Sbjct: 4450 TGSLHCVACSDAGEV--------YTWGDNDEGQLGDGTVTAIQRPRLVAALQGKH---IV 4498
Query: 124 EVTCGSFH-----TALLTHRKRP 141
+VTCGS H T+ L+ R RP
Sbjct: 4499 KVTCGSAHTLALSTSQLSERLRP 4521
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 33/226 (14%)
Query: 73 VSAGETYKGE-DLVC--YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCG 128
S GE+ E +L C WG N+ QLG G + S+++ P +T ++ P ++ G
Sbjct: 3013 TSLGESVAAEQELPCTVMVWGLNDKEQLG-GLKGSKVKVPTFSQTISRLRP---IHISGG 3068
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVD 187
S +++ + + G G NG+LG G T + +P Q+ L QYV V+V
Sbjct: 3069 SKSLFIVSQ--------DGKVFACGEGTNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVH 3120
Query: 188 CGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
G H ++ G V+SWG E G LG +L + +A+ K +D
Sbjct: 3121 SGGKHALALTLDGKVFSWGEGEDGKLGHGNRTTLDKPRLVEAL----------RAKKIRD 3170
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
VACG++H+ ++ G +L++WG G G LG G P V
Sbjct: 3171 ---VACGSSHSAAISSQG-ELYTWGLGEYGRLGHGDNATQLKPKQV 3212
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ ++ G SLA+ AG +W WG D G P P+ G V+ VA
Sbjct: 3274 VIQIECGAQFSLALTRAGEVWTWGKG---DYYRLGHGGDQHVRKPQPIGGLRGRRVIHVA 3330
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ AG+ Y+WG N++GQ G G+ +P ++ D+ + V
Sbjct: 3331 VGALHCLAVTDAGQV--------YAWGDNDHGQQGSGNTFVNKKPALV--IGLDAVF-VN 3379
Query: 124 EVTCGSFHT 132
V CGS H+
Sbjct: 3380 RVACGSSHS 3388
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 93/221 (42%), Gaps = 39/221 (17%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS---FTPSPVWDFHGHTVVKV 62
+V G S AI +G L+ WG T G +S P+ V + ++ V
Sbjct: 670 AVFCGCSYSAAITWSGNLYTWGR------GTYGRLGHGNSDDQCVPAIVMALAEYEIIDV 723
Query: 63 ACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
A GS H + L S G + Y+WG + G+LG G+ S L+P ++ET +
Sbjct: 724 ALGSGDAHSLCLTSEG--------LVYAWGDGDYGKLGNGNCNSSLQPILVETLPR---- 771
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG----TTQSALVPEQVKE 176
V + G+ + LT + G+ LGH + Q VP V
Sbjct: 772 -VQRIFAGAQSSMALTTEGH----------LYSWGKASCLGHQQVERSVQGCSVPRLVSS 820
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNA 217
L Q+ LV V G+ H ++S G+V+ WG +CP++
Sbjct: 821 L-QHKRLVDVAVGVAHCLALTSCGEVFGWGRNDSQQICPSS 860
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 21/186 (11%)
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
L P+ IE Q++ ++ G A+ ++R +++G GE+ +LGHG T
Sbjct: 602 LEPQPIEELAQETILSIAGHCEGRHFLAIDSNRN---------AYSWGAGEDHRLGHGDT 652
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
+ VP ++ L + V +V CG +++ ++ +G++++WG +G L +
Sbjct: 653 HARAVPTKISALDRCVK--AVFCGCSYSAAITWSGNLYTWG--RGT----YGRLGHGNSD 704
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
D P ++ + + D V + G AH++ +T +G +++WG G G LG G
Sbjct: 705 DQCVPAIVMALAEY--EIID-VALGSGDAHSLCLTSEGL-VYAWGDGDYGKLGNGNCNSS 760
Query: 286 FAPAIV 291
P +V
Sbjct: 761 LQPILV 766
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 32/210 (15%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y WG N+ GQLG G SR++ P E + P ++ G +T P+ L
Sbjct: 4149 YGWGHNHRGQLG-GLEGSRIKTPTPCEALSLLRP---VQLAGGEQSLFAVT----PDGKL 4200
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVW 203
+ G G G+LG G + S +P + L Q+V++ V+V+ G H +++ G+V+
Sbjct: 4201 ----FATGYGSGGRLGVGGSDSWAIPTLLGSL-QHVFVKKVAVNSGGKHCLALTTEGEVY 4255
Query: 204 SWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+WG E G LG S R + + ++ + ++ +ACG+AH+ +T
Sbjct: 4256 AWGEGEDGKLGHGNRMSYDRPKLVEHLNGMSVA-------------DIACGSAHSAAITS 4302
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ L +WG+GR G LG G + D P +V
Sbjct: 4303 SGHVL-TWGKGRYGRLGHGDSEDQLRPKLV 4331
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 39/212 (18%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+LA+ GA++ WG+ D G S TP + G V+++ CG++ +AL
Sbjct: 3232 TLALTEDGAVFSWGDG---DFGKLGRGGSEGSATPHEIERLSGIGVIQIECGAQFSLALT 3288
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
AGE ++WG + +LG G + +P+ I V V G+ H
Sbjct: 3289 RAGEV--------WTWGKGDYYRLGHGGDQHVRKPQPIGGLRGRR---VIHVAVGALHCL 3337
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
+T + +G ++GQ G G T P V L V++ V CG H+
Sbjct: 3338 AVTD--------AGQVYAWGDNDHGQQGSGNTFVNKKPALVIGL-DAVFVNRVACGSSHS 3388
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
+WG+ PNASL + G
Sbjct: 3389 ---------IAWGL-------PNASLDEEKRG 3404
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I S+ G + +A +AG ++ WG+ D G ++ + P V G +VKV
Sbjct: 4444 KIISIATGSLHCVACSDAGEVYTWGD---NDEGQLGDGTVTAIQRPRLVAALQGKHIVKV 4500
Query: 63 ACGSEHVVALVSA 75
CGS H +AL ++
Sbjct: 4501 TCGSAHTLALSTS 4513
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 16/126 (12%)
Query: 169 LVPEQVKELPQYVYL-VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDA 227
L P+ ++EL Q L ++ C H + S + +SWG + + L +
Sbjct: 602 LEPQPIEELAQETILSIAGHCEGRHFLAIDSNRNAYSWGAGE------DHRLGHGDTHAR 655
Query: 228 ISPILISGNGPHGPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFF 286
P IS V+ V CG +++ +T G L++WGRG G LG G + D
Sbjct: 656 AVPTKISA-------LDRCVKAVFCGCSYSAAITWSG-NLYTWGRGTYGRLGHGNSDDQC 707
Query: 287 APAIVL 292
PAIV+
Sbjct: 708 VPAIVM 713
>gi|357620246|gb|EHJ72511.1| hypothetical protein KGM_11261 [Danaus plexippus]
Length = 4305
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 112/234 (47%), Gaps = 34/234 (14%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V G +H +AL + G+ Y SWG +G+LG G+R + P++IE+ +
Sbjct: 3147 VAVHSGGKHALALTADGKVY--------SWGEGEDGKLGHGNRITLEAPRLIESLAGER- 3197
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V + CGS H+A +T R +T+GLGE G+LGHG LVP+ V+ L
Sbjct: 3198 --VISIACGSAHSACVTAR--------GHLYTWGLGEYGRLGHGDDNIQLVPKMVEALAN 3247
Query: 180 YVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
Y ++ V CG T +++ G V+SWG + G L R + P+ +
Sbjct: 3248 Y-RVIQVACGSRDAQTLALTACGKVFSWG-DGDFG-----KLGRGGSDGCAIPMNVERLN 3300
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G QV CGA ++ +T DG ++W+WG+G LG G P +V
Sbjct: 3301 SLG-----VTQVECGAQFSLALTRDG-EVWTWGKGDYFRLGHGCDAHVRRPTLV 3348
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 128/287 (44%), Gaps = 33/287 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+ +GG LA+ G ++ WG + G + VS P + G VV +ACG
Sbjct: 4042 ACNSGGKHCLALSADGEVYSWGE---GEDGKLGHGNRVSYDRPKLITALSGLEVVCIACG 4098
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H L + G Y +WG G+LG GD E +L PK++E S + V +V
Sbjct: 4099 GAHSACLTARGRIY--------TWGKGRYGRLGHGDSEDQLIPKLVEAL---SSFRVIDV 4147
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G ++ +P ++ L + + ++
Sbjct: 4148 ACGSGDAQTLCITDDDN------VWSWGDGDYGKLGRGGSEGCKLPMRIDCL-KGLRVIK 4200
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
V+CG + + G V++WG KG L P+ ++G + +
Sbjct: 4201 VECGSQFSVALCQCGSVYTWG--KG----DYHRLGHGSYEHVRRPMRVTGM-----QGKM 4249
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
V +A G+ H V TD G ++++WG G LG G T+ P +++
Sbjct: 4250 IVSIATGSLHCVACTDTG-EVYTWGDNDEGQLGDGTTLAAQRPRLLM 4295
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 131/293 (44%), Gaps = 47/293 (16%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + ++ P + G V+ +ACG
Sbjct: 3148 AVHSGGKHALALTADGKVYSWGE---GEDGKLGHGNRITLEAPRLIESLAGERVISIACG 3204
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H + + G Y+WG G+LG GD +L PK++E + V +V
Sbjct: 3205 SAHSACVTARGHL--------YTWGLGEYGRLGHGDDNIQLVPKMVEALAN---YRVIQV 3253
Query: 126 TCGSFHTALLTHRKRPNDMLESMC---WTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
CGS + + + C +++G G+ G+LG G + +P V+ L +
Sbjct: 3254 ACGS---------RDAQTLALTACGKVFSWGDGDFGKLGRGGSDGCAIPMNVERL-NSLG 3303
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGP 238
+ V+CG + ++ G+VW+WG KG LG +A + R +A+
Sbjct: 3304 VTQVECGAQFSLALTRDGEVWTWG--KGDYFRLGHGCDAHVRRPTLVEAL---------- 3351
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + + VA GA H + VT + ++W+WG G G G T PA+V
Sbjct: 3352 ---RGRRVIHVAVGALHCLAVTSEN-QVWAWGDNDHGQQGNGTTCVNRRPALV 3400
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 24/196 (12%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
++ G NG+LGLG + P+ + V V G H LT +
Sbjct: 3112 FACGEGTNGRLGLGHSNNVSTPRANPYLSHVLVRRV-AVHSGGKHALALT--------AD 3162
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G GE+G+LGHG + P ++ L ++S+ CG H++ V++ G +++WG
Sbjct: 3163 GKVYSWGEGEDGKLGHGNRITLEAPRLIESLAGE-RVISIACGSAHSACVTARGHLYTWG 3221
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
+ + L + + P ++ + +QVACG+ A T+ +T G
Sbjct: 3222 LGE------YGRLGHGDDNIQLVPKMVEALANY-----RVIQVACGSRDAQTLALTACG- 3269
Query: 265 KLWSWGRGRSGVLGTG 280
K++SWG G G LG G
Sbjct: 3270 KVFSWGDGDFGKLGRG 3285
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 18/117 (15%)
Query: 179 QYVYLVSVDC--GLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILIS 234
Q+V++ V C G H +S+ G+V+SWG E G LG S R + A+S + +
Sbjct: 4034 QHVFITKVACNSGGKHCLALSADGEVYSWGEGEDGKLGHGNRVSYDRPKLITALSGLEV- 4092
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V +ACG AH+ +T G ++++WG+GR G LG G + D P +V
Sbjct: 4093 ------------VCIACGGAHSACLTARG-RIYTWGKGRYGRLGHGDSEDQLIPKLV 4136
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V+ G S+A+ G+++ WG D G S P V G +V +
Sbjct: 4197 RVIKVECGSQFSVALCQCGSVYTWGK---GDYHRLGHGSYEHVRRPMRVTGMQGKMIVSI 4253
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
A GS H VA GE Y +WG N+ GQLG G + RP+++
Sbjct: 4254 ATGSLHCVACTDTGEVY--------TWGDNDEGQLGDGTTLAAQRPRLL 4294
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 21/132 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ TP V T+ +V+C S H + S G + SWG +G+LG GD
Sbjct: 511 TMTPHLVPGLESKTITQVSCHSLGRHYLCRSSCGGAW--------SWGIGEDGRLGHGDT 562
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
+R P+ + V V G +A++T R +T+G G G+LGH
Sbjct: 563 AARDAPQPLHHLAHHE---VVRVAAGLACSAVITSR--------GALYTWGRGAQGRLGH 611
Query: 163 GTTQSALVPEQV 174
GT ++ L P+ V
Sbjct: 612 GTIENCLTPQPV 623
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 66/169 (39%), Gaps = 22/169 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +L I + +W WG+ D G P + G V+KV CGS+
Sbjct: 4151 SGDAQTLCITDDDNVWSWGD---GDYGKLGRGGSEGCKLPMRIDCLKGLRVIKVECGSQF 4207
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL G Y +WG + +LG G E RP + + + G
Sbjct: 4208 SVALCQCGSVY--------TWGKGDYHRLGHGSYEHVRRPMRVTGMQGK---MIVSIATG 4256
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
S H T D E +T+G + GQLG GTT +A P + L
Sbjct: 4257 SLHCVACT------DTGE--VYTWGDNDEGQLGDGTTLAAQRPRLLMAL 4297
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 87/234 (37%), Gaps = 48/234 (20%)
Query: 11 GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVV 70
G L + G W WG + + G + P P+ H VV+VA G
Sbjct: 534 GRHYLCRSSCGGAWSWG---IGEDGRLGHGDTAARDAPQPLHHLAHHEVVRVAAGLACSA 590
Query: 71 ALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG-- 128
+ S G Y+WG G+LG G E+ L P+ + +FN + + +V G
Sbjct: 591 VITSRG--------ALYTWGRGAQGRLGHGTIENCLTPQPV-SFNAHNIERIIDVALGWG 641
Query: 129 ------------------------SFHTALLTHRKRPNDMLE---------SMCWTFGLG 155
+AL R E +T+G G
Sbjct: 642 EGSTLCCTWEGAVQVFGEGEAGTPRALSALAMFRVTRVYTGEHWHAALTDGGQVYTWGKG 701
Query: 156 ENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+ +LGHG +S +P+ V+ L Q + +V + G H +SS G ++ WG +
Sbjct: 702 DGYRLGHGNMESTKIPKLVEAL-QGIKIVDLSLGASHGIALSSEGVLFVWGTHE 754
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 11/108 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G SLA+ G +W WG D G P+ V G V+ VA
Sbjct: 3304 VTQVECGAQFSLALTRDGEVWTWGK---GDYFRLGHGCDAHVRRPTLVEALRGRRVIHVA 3360
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
G+ H +A+ S + ++WG N++GQ G G RP ++
Sbjct: 3361 VGALHCLAVTSENQV--------WAWGDNDHGQQGNGTTCVNRRPALV 3400
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 12/100 (12%)
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
H SS G WSWG+ + L + R DA P+ H + V+VA
Sbjct: 536 HYLCRSSCGGAWSWGIGEDGRLGHGDTAAR----DAPQPL-------HHLAHHEVVRVAA 584
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G A + ++T G L++WGRG G LG G + P V
Sbjct: 585 GLACSAVITSRG-ALYTWGRGAQGRLGHGTIENCLTPQPV 623
>gi|224496032|ref|NP_001139103.1| probable E3 ubiquitin-protein ligase HERC4-like [Danio rerio]
Length = 992
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 122/260 (46%), Gaps = 32/260 (12%)
Query: 50 PVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-P 108
P+ V+++ACG +H +AL + G+ + WG N +GQLGL ++ + P
Sbjct: 108 PLKSLENRQVIQIACGDQHSMALSNDGQ--------LFVWGENTHGQLGLRKEQAGTQSP 159
Query: 109 KIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA 168
+ +++ + V +++ G H+ +L+ L + + +G GQLG G T+
Sbjct: 160 QHLQSLCE---IPVAQISAGGNHSFVLS--------LSGVVFGWGSNSAGQLGLGDTKDR 208
Query: 169 LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
VP VK L VS+ CG HT+ +S G V+++G G G L N D
Sbjct: 209 FVPTIVKSLCGK-KTVSISCGGEHTATLSKGGTVFTFG-SGGFG-----QLGHNSLKDEH 261
Query: 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
P LI+ G K QV CG HT++ + ++S+G G G LG G+ + P
Sbjct: 262 HPRLIAE--LWGSKVS---QVTCGRHHTLVFEESSKLIYSFGCGMQGQLGNGEQVKQSVP 316
Query: 289 AIVLWPPLTEEFKQDELNTG 308
VL P EF ++L TG
Sbjct: 317 LPVLLPTECTEFTMEKLITG 336
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 39/193 (20%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS---FTPSPVWDFHGHTVV 60
+ + AGG S + +G ++ WG S++ G L + F P+ V G V
Sbjct: 170 VAQISAGGNHSFVLSLSGVVFGWG------SNSAGQLGLGDTKDRFVPTIVKSLCGKKTV 223
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++CG EH L G +++G+ GQLG + P++I W
Sbjct: 224 SISCGGEHTATLSKGG--------TVFTFGSGGFGQLGHNSLKDEHHPRLIAEL-----W 270
Query: 121 A--VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V +VTCG HT + + + ++FG G GQLG+G EQVK+
Sbjct: 271 GSKVSQVTCGRHHTLVFEESSK-------LIYSFGCGMQGQLGNG--------EQVKQSV 315
Query: 179 QYVYLVSVDCGLF 191
L+ +C F
Sbjct: 316 PLPVLLPTECTEF 328
>gi|444919547|ref|ZP_21239559.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
gi|444708350|gb|ELW49425.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
Length = 684
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 125/292 (42%), Gaps = 45/292 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S++ + AG + SLA+ N G +W WG G SL S P V G V
Sbjct: 35 LSEVVAAAAGSIHSLALRNDGTVWAWGYNGYGQ---LGNGSLGSRAEPVQVQGLSGG--V 89
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V G H +A+ +D ++WG N NGQLG G RL P ++ ++
Sbjct: 90 SVDAGHYHSLAVR--------DDGTVWAWGDNPNGQLGEGTTTRRLVPVQVQGLSE---- 137
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V VT GS H+ L + W +G +GQLG GTT + LVP V L +
Sbjct: 138 -VVAVTAGSSHSLALRS--------DGTVWAWGANASGQLGEGTTTNRLVPVPVLGLSE- 187
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V+V+ G H+ + S G VW+WG L + R + P+ +
Sbjct: 188 --VVAVEAGSSHSLALRSDGTVWAWGANASGQLGDGTTTKR------LVPVQV------- 232
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
V + G+ +++ V +DG +W+WG SG LG P VL
Sbjct: 233 --LSGVVAMEAGSGYSLAVRNDG-TVWAWGYNFSGQLGDDTVTSRSTPVQVL 281
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 125/295 (42%), Gaps = 53/295 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S++ +V AG SLA+ + G +W WG S G + + P PV VV
Sbjct: 135 LSEVVAVTAGSSHSLALRSDGTVWAWGANA---SGQLGEGTTTNRLVPVPVLGLS--EVV 189
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V GS H +AL S D ++WGAN +GQLG G RL P + +
Sbjct: 190 AVEAGSSHSLALRS--------DGTVWAWGANASGQLGDGTTTKRLVPVQVLS------- 234
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + GS ++ + + + W +G +GQLG T S P QV L +
Sbjct: 235 GVVAMEAGSGYSLAVRN--------DGTVWAWGYNFSGQLGDDTVTSRSTPVQVLGLSE- 285
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGN 236
+V+V G + + S G VW+WG ++G G N + P+ G
Sbjct: 286 --VVAVAAGSSLSLALRSDGTVWAWGSNDYGQRGEGTTSNRAF----------PVQARG- 332
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA G AH++ V DG +W+WG SG LG G T + P V
Sbjct: 333 ------LSGGVAVAAGYAHSLAVRSDG-TVWAWGSNASGQLGEGTTSNRSEPVQV 380
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 127/291 (43%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S++ +V AG +SLA+ + G +W WG+ D G + + P G V
Sbjct: 283 LSEVVAVAAGSSLSLALRSDGTVWAWGSN---DYGQRGEGTTSNRAFPVQARGLSGG--V 337
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H +A+ S D ++WG+N +GQLG G +R P ++ +
Sbjct: 338 AVAAGYAHSLAVRS--------DGTVWAWGSNASGQLGEGTTSNRSEPVQVQGLS----- 384
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V+ G+ ++ L R + W +G +GQLG GTT LVP QV+ L
Sbjct: 385 GVVAVSAGA--SSSLAIRS------DGTVWAWGSNASGQLGDGTTTDRLVPVQVQGLSGV 436
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
V +V G + V + G VW WG L SL + P+ ++G
Sbjct: 437 VAVV---AGTSFSLAVRNDGTVWGWGYNGYGQLGTFTSLF------VLVPVQVTG----- 482
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA G H++ V DG +W+ GR +G LG G + AP V
Sbjct: 483 --LSGVVAVAAGNLHSLAVRSDG-TVWALGRNDNGQLGDGSWTNRSAPVQV 530
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 90/206 (43%), Gaps = 32/206 (15%)
Query: 89 WGANNNGQ--LGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
W A NNG LG G R++R P + ++ V GS H+ L + +
Sbjct: 8 WAAGNNGSGQLGDGTRDNRSTPVQVLGLSE-----VVAAAAGSIHSLALRN--------D 54
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
W +G GQLG+G+ S P QV+ L VSVD G +H+ V G VW+WG
Sbjct: 55 GTVWAWGYNGYGQLGNGSLGSRAEPVQVQGLSGG---VSVDAGHYHSLAVRDDGTVWAWG 111
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
PN L + P+ + G + V V G++H++ + DG +
Sbjct: 112 DN------PNGQLGEGTTTRRLVPVQVQG-------LSEVVAVTAGSSHSLALRSDG-TV 157
Query: 267 WSWGRGRSGVLGTGKTIDFFAPAIVL 292
W+WG SG LG G T + P VL
Sbjct: 158 WAWGANASGQLGEGTTTNRLVPVPVL 183
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 128/293 (43%), Gaps = 47/293 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT-PSPVWDFHGHTV 59
+S +V AG SLA+ + G +W WG+ ++S + G S+ + P V G V
Sbjct: 333 LSGGVAVAAGYAHSLAVRSDGTVWAWGS----NASGQLGEGTTSNRSEPVQVQGLSG--V 386
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G+ +A+ S D ++WG+N +GQLG G RL P ++ +
Sbjct: 387 VAVSAGASSSLAIRS--------DGTVWAWGSNASGQLGDGTTTDRLVPVQVQGLS---- 434
Query: 120 WAVYEVTCG-SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V V G SF A+ ND W +G GQLG T+ LVP QV L
Sbjct: 435 -GVVAVVAGTSFSLAV------RND---GTVWGWGYNGYGQLGTFTSLFVLVPVQVTGLS 484
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+V+V G H+ V S G VW+ LG N L + +P+ ++G
Sbjct: 485 G---VVAVAAGNLHSLAVRSDGTVWA------LGRNDNGQLGDGSWTNRSAPVQVTG--- 532
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA G +H++ V DG +W+WG G LG G AP V
Sbjct: 533 ----LSGVVSVAAGDSHSLAVRYDG-SVWAWGYNSFGQLGDGSWFQRSAPVQV 580
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 113/282 (40%), Gaps = 43/282 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + +V AG SLAI + G +W WG+ S G + P V G VV
Sbjct: 383 LSGVVAVSAGASSSLAIRSDGTVWAWGSNA---SGQLGDGTTTDRLVPVQVQGLSG--VV 437
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V G+ +A+ D + WG N GQLG L P + +
Sbjct: 438 AVVAGTSFSLAVR--------NDGTVWGWGYNGYGQLGTFTSLFVLVPVQVTGLS----- 484
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V G+ H+ L R + W G +NGQLG G+ + P QV L
Sbjct: 485 GVVAVAAGNLHS--LAVRS------DGTVWALGRNDNGQLGDGSWTNRSAPVQVTGLSG- 535
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+VSV G H+ V G VW+WG G + S + A P+ ++G G
Sbjct: 536 --VVSVAAGDSHSLAVRYDGSVWAWGYNS-FGQLGDGSWFQRSA-----PVQVTGLSGRG 587
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
VA + +++ V DG +W+WG G LG G T
Sbjct: 588 -------SVAASSDYSMAVRYDG-TVWAWGFNLYGQLGDGTT 621
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 116/280 (41%), Gaps = 42/280 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + +V AG SLA+ N G +W WG T F+ + P V G VV
Sbjct: 433 LSGVVAVVAGTSFSLAVRNDGTVWGWGYNGYGQLGT---FTSLFVLVPVQVTGLSG--VV 487
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+ H +A+ S D ++ G N+NGQLG G +R P + +
Sbjct: 488 AVAAGNLHSLAVRS--------DGTVWALGRNDNGQLGDGSWTNRSAPVQVTGLS----- 534
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V G H+ + + + W +G GQLG G+ P QV L
Sbjct: 535 GVVSVAAGDSHSLAVRY--------DGSVWAWGYNSFGQLGDGSWFQRSAPVQVTGLSGR 586
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
SV ++ V G VW+WG G + + + N+ + P+ +
Sbjct: 587 G---SVAASSDYSMAVRYDGTVWAWGFNL-YGQLGDGTTSSNQ----LVPVQVQ------ 632
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ + V V G++H++ + DG +W+WG G LG G
Sbjct: 633 -QLRGVVAVEVGSSHSLALRSDG-TVWTWGYNSFGQLGNG 670
>gi|255081710|ref|XP_002508077.1| E3 ubiquitin-protein ligase [Micromonas sp. RCC299]
gi|226523353|gb|ACO69335.1| E3 ubiquitin-protein ligase [Micromonas sp. RCC299]
Length = 1348
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 127/305 (41%), Gaps = 43/305 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT---VV 60
+ V G S+A+ +AG ++ +G+C + L + P + V
Sbjct: 210 VTHVAGGARHSVAVTSAGEVYAFGDCSGEGKALSAPTRLREAVIDPPEVTATTNAMPRVA 269
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG---DRESRLRPKIIETFNQD 117
VACG H A+ ++G V SWG GQLG G D S+ K + D
Sbjct: 270 TVACGQRHCAAVTTSG--------VLLSWGNEEFGQLGQGPPRDSSSKGDAKSLIRRRAD 321
Query: 118 S---PWAV-------YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
+ P V V CG+ HT LT R ++FG G G LGHG +
Sbjct: 322 ASMMPRLVGSGHVKFTSVACGAGHTLALTANGR--------VFSFGRGAFGALGHGDRLN 373
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDA 227
VP V L V + + G H++ +S++G V++WG K +L + +
Sbjct: 374 CDVPRLVDAL-WGVGVAQIAAGDNHSASLSASGRVYTWGRGK------YGALGHRDVDNR 426
Query: 228 ISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK-LWSWGRGRSGVLGTGKTIDFF 286
P + G + + Q+ACG HT+ + G L +WGRG SG GTG T D
Sbjct: 427 SRPTPVQALDDAGVRCE---QIACGGDHTLAIAGGGSGVLLAWGRGSSGPAGTGATADVL 483
Query: 287 APAIV 291
P I+
Sbjct: 484 TPTII 488
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 123/299 (41%), Gaps = 55/299 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN--------CPLPDSSTEG-GFSLV-----SSF 46
M ++ +V G A+ +G L WGN P DSS++G SL+ +S
Sbjct: 265 MPRVATVACGQRHCAAVTTSGVLLSWGNEEFGQLGQGPPRDSSSKGDAKSLIRRRADASM 324
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
P V H VACG+ H +AL + G + S+G G LG GDR +
Sbjct: 325 MPRLVGSGH-VKFTSVACGAGHTLALTANGRVF--------SFGRGAFGALGHGDRLNCD 375
Query: 107 RPKIIETFNQDSPWAV--YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
P+++ D+ W V ++ G H+A L+ R +T+G G+ G LGH
Sbjct: 376 VPRLV-----DALWGVGVAQIAAGDNHSASLSASGR--------VYTWGRGKYGALGHRD 422
Query: 165 TQSALVPEQVKELPQY-VYLVSVDCGLFHTSVVSSAGD----VWSWGMEKGLGLCPNASL 219
+ P V+ L V + CG HT ++ G W G G A
Sbjct: 423 VDNRSRPTPVQALDDAGVRCEQIACGGDHTLAIAGGGSGVLLAWGRGSSGPAGTGATA-- 480
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
D ++P +I K Q++ G+ H+V VT+ G +++WG G LG
Sbjct: 481 ------DVLTPTIIDRALLGDEKV---FQISAGSKHSVAVTEGGC-VYTWGARTQGQLG 529
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 24/163 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV--WDFHGHTVVK 61
+ + AG S ++ +G ++ WG G + + P+PV D G +
Sbjct: 388 VAQIAAGDNHSASLSASGRVYTWGRGKY---GALGHRDVDNRSRPTPVQALDDAGVRCEQ 444
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE-TFNQDSPW 120
+ACG +H +A+ G V +WG ++G G G L P II+ D
Sbjct: 445 IACGGDHTLAIAGGGSG------VLLAWGRGSSGPAGTGATADVLTPTIIDRALLGDE-- 496
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMC-WTFGLGENGQLGH 162
V++++ GS H+ +T E C +T+G GQLGH
Sbjct: 497 KVFQISAGSKHSVAVT---------EGGCVYTWGARTQGQLGH 530
>gi|428177727|gb|EKX46605.1| hypothetical protein GUITHDRAFT_48927, partial [Guillardia theta
CCMP2712]
Length = 316
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 112/246 (45%), Gaps = 32/246 (13%)
Query: 43 VSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
VSS TP + G V VACG H ++ +GE ++C WG N GQ G G +
Sbjct: 15 VSSSTPRMLKKAMGRQVRDVACGLVHSAMVMGSGE------VLC--WGENKYGQCGTGTQ 66
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
E P + + A V+CG HT +++ R +++GLG NGQLGH
Sbjct: 67 EQTEHPTFVGSL---FGVACMSVSCGGAHTVVVSEDGRV--------FSWGLGANGQLGH 115
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+ + P V+ + L +V CG+ HT +V + G++++ G K N
Sbjct: 116 GSRDNLTTPSVVQAMRGRDVL-AVTCGVGHTVIVLAGGELYTCGWNK------NGQCGVG 168
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
D +SP + G + +CGA HT +VT G +++++G G G LG G
Sbjct: 169 STSDLLSPQCVESLRGEGVQ-----HASCGAGHTAVVTGGG-EVFTFGSGSCGQLGHGDC 222
Query: 283 IDFFAP 288
D P
Sbjct: 223 QDLSMP 228
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 115/261 (44%), Gaps = 45/261 (17%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+ V G + V+CG H V + ED +SWG NGQLG G R++
Sbjct: 72 PTFVGSLFGVACMSVSCGGAHTVVV--------SEDGRVFSWGLGANGQLGHGSRDNLTT 123
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
P +++ V VTCG HT ++ + +T G +NGQ G G+T
Sbjct: 124 PSVVQAMRGRD---VLAVTCGVGHTVIV--------LAGGELYTCGWNKNGQCGVGSTSD 172
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNE 223
L P+ V+ L + + CG HT+VV+ G+V+++G + G G C + S+ R
Sbjct: 173 LLSPQCVESL-RGEGVQHASCGAGHTAVVTGGGEVFTFGSGSCGQLGHGDCQDLSMPRRV 231
Query: 224 AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
A+ I++S VACG +TV D ++++ +G G LG T
Sbjct: 232 G--ALVGIVMS-------------MVACGEEYTVCAAFD-HRVFGFGLNNVGQLGASSTS 275
Query: 284 DFFAPAIVLWPPLTEEFKQDE 304
+ L P EF ++E
Sbjct: 276 HPY-----LSEPRQMEFLKEE 291
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 14/107 (13%)
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
V CGL H+++V +G+V WG K G C + + E P + G F
Sbjct: 34 VACGLVHSAMVMGSGEVLCWGENK-YGQCGTGTQEQTE-----HPTFV------GSLFGV 81
Query: 246 P-VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ V+CG AHTV+V++DG +++SWG G +G LG G + P++V
Sbjct: 82 ACMSVSCGGAHTVVVSEDG-RVFSWGLGANGQLGHGSRDNLTTPSVV 127
>gi|326674002|ref|XP_001334658.4| PREDICTED: RCC1 and BTB domain-containing protein 2 [Danio rerio]
Length = 527
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 112/249 (44%), Gaps = 31/249 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + G ++ ++ G+ HVV + GE Y +WG N QLG G
Sbjct: 61 STIEPRRIDILCGKKIISLSYGTGPHVVIATADGEVY--------AWGHNGYSQLGNGTT 112
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P ++ T V EV+CGS HT LT + + +G +GQ+G
Sbjct: 113 NHGLTPALVST--NLIGKRVTEVSCGSHHTIALT--------TDGEVYAWGYNNSGQVGS 162
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + P +V Q +V++ CG + V G+ + WG N L
Sbjct: 163 GSTANQPTPRRVSSCLQNKVVVNIACGQLCSMAVLDNGETYGWGYN------CNGQLGLG 216
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
G+ +P I+ + + +QVACG AHT+ +TD+G+ ++SWG G LGTG
Sbjct: 217 NNGNQQTPCRIA-----ALQGINIIQVACGYAHTLALTDEGF-VYSWGANSYGQLGTGNK 270
Query: 283 IDFFAPAIV 291
+ P ++
Sbjct: 271 SNQAVPTLI 279
>gi|194893471|ref|XP_001977881.1| GG19286 [Drosophila erecta]
gi|190649530|gb|EDV46808.1| GG19286 [Drosophila erecta]
Length = 4908
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 137/291 (47%), Gaps = 41/291 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + + P V + VACG
Sbjct: 3074 AVHSGGKHALALTLDGKVFSWGEG---EDGKLGHGNRTTLDKPRLVEALRAKKIRDVACG 3130
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S GE Y +WG G+LG GD ++L+PK++ + V +V
Sbjct: 3131 SSHSAAISSQGELY--------TWGLGEYGRLGHGDNVTQLKPKLVVAL---AGRRVVQV 3179
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L + + +++G G+ G+LG G ++ + P +++ L + +V
Sbjct: 3180 ACGSRDAQTLALTE------DGAVFSWGDGDFGKLGRGGSEGSDTPHEIERL-SGIGVVQ 3232
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ AG+VW+WG KG LG + + + + PI G G
Sbjct: 3233 IECGAQFSLALTRAGEVWTWG--KGDYYRLGHGGDQHVRKPQ------PI----GGLRGR 3280
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ + VA GA H + VTD G ++++WG G G+G T PA+V+
Sbjct: 3281 RV---IHVAVGALHCLAVTDAG-QVYAWGDNDHGQQGSGNTFVNKKPALVI 3327
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 130/290 (44%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ G ++ WG + G + +S P V +G +V +ACG
Sbjct: 4136 AVNSGGKHCLALTTEGEVYAWGEG---EDGKLGHGNRMSYDRPKLVEHLNGMSVADIACG 4192
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ ++G +WG G+LG GD E +LRPK++E + ++
Sbjct: 4193 SAHSAAITASGHVL--------TWGKGRYGRLGHGDSEDQLRPKLVEALLG---YRAIDI 4241
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + +P +++ L + +V
Sbjct: 4242 ACGSGDAQTLCITDDDN------VWSWGDGDYGKLGRGGSDGCKLPYKIESLAG-LGVVK 4294
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + R + A+ G
Sbjct: 4295 VECGSQFSVALTKSGAVYTWG--KGDFHRLGHGSVDHVRRPKKVAAL----------QGK 4342
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + +A G+ H V +D G ++++WG G LG G P +V
Sbjct: 4343 KI---ISIATGSLHCVACSDSG-EVYTWGDNDEGQLGDGTVTAIQRPRLV 4388
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 106/233 (45%), Gaps = 32/233 (13%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V G +H +AL + GE Y +WG +G+LG G+R S RPK++E N S
Sbjct: 4135 VAVNSGGKHCLALTTEGEVY--------AWGEGEDGKLGHGNRMSYDRPKLVEHLNGMS- 4185
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V ++ CGS H+A +T T+G G G+LGHG ++ L P+ V+ L
Sbjct: 4186 --VADIACGSAHSAAIT--------ASGHVLTWGKGRYGRLGHGDSEDQLRPKLVEALLG 4235
Query: 180 YVYL-VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Y + ++ G T ++ +VWSWG + G L R + P I
Sbjct: 4236 YRAIDIACGSGDAQTLCITDDDNVWSWG-DGDYG-----KLGRGGSDGCKLPYKIESLAG 4289
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G V+V CG+ +V +T G +++WG+G LG G P V
Sbjct: 4290 LG-----VVKVECGSQFSVALTKSG-AVYTWGKGDFHRLGHGSVDHVRRPKKV 4336
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 90/204 (44%), Gaps = 21/204 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G S AI + G L+ WG L + G V+ P V G VV+V
Sbjct: 3123 KIRDVACGSSHSAAISSQGELYTWG---LGEYGRLGHGDNVTQLKPKLVVALAGRRVVQV 3179
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L ED +SWG + G+LG G E P IE S V
Sbjct: 3180 ACGSRDAQTLALT------EDGAVFSWGDGDFGKLGRGGSEGSDTPHEIERL---SGIGV 3230
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT R ++ WT+G G+ +LGHG Q P+ + L +
Sbjct: 3231 VQIECGAQFSLALT---RAGEV-----WTWGKGDYYRLGHGGDQHVRKPQPIGGL-RGRR 3281
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG 206
++ V G H V+ AG V++WG
Sbjct: 3282 VIHVAVGALHCLAVTDAGQVYAWG 3305
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 32/217 (14%)
Query: 82 EDLVC--YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
+DL C WG N+ QLG G + S+++ P +T ++ P + GS +++
Sbjct: 2979 QDLPCTVMVWGLNDKEQLG-GLKGSKVKVPTFSQTISRLRP---IHIAGGSKSLFIVSQ- 3033
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-LVSVDCGLFHTSVVS 197
+ + G G NG+LG G T + +P Q+ L QYV V+V G H ++
Sbjct: 3034 -------DGKVYACGEGTNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALT 3086
Query: 198 SAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
G V+SWG E G LG +L + +A+ K +D VACG++H
Sbjct: 3087 LDGKVFSWGEGEDGKLGHGNRTTLDKPRLVEAL----------RAKKIRD---VACGSSH 3133
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ ++ G +L++WG G G LG G + P +V+
Sbjct: 3134 SAAISSQG-ELYTWGLGEYGRLGHGDNVTQLKPKLVV 3169
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 19/143 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G S+A+ +GA++ WG D G S+ P V G ++ +A
Sbjct: 4292 VVKVECGSQFSVALTKSGAVYTWGKG---DFHRLGHGSVDHVRRPKKVAALQGKKIISIA 4348
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H VA +GE Y +WG N+ GQLG G + RP+++ +
Sbjct: 4349 TGSLHCVACSDSGEVY--------TWGDNDEGQLGDGTVTAIQRPRLVAALQGKH---IV 4397
Query: 124 EVTCGSFH-----TALLTHRKRP 141
+VTCGS H T+ L+ R RP
Sbjct: 4398 KVTCGSAHTLALSTSQLSERLRP 4420
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 23/191 (12%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +L I + +W WG+ D G P + G VVKV CGS+
Sbjct: 4245 SGDAQTLCITDDDNVWSWGDG---DYGKLGRGGSDGCKLPYKIESLAGLGVVKVECGSQF 4301
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL +G Y+WG + +LG G + RPK + + + G
Sbjct: 4302 SVALTKSG--------AVYTWGKGDFHRLGHGSVDHVRRPKKVAALQGKK---IISIATG 4350
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
S H + +T+G + GQLG GT + P V L Q ++V V C
Sbjct: 4351 SLHCVACSD--------SGEVYTWGDNDEGQLGDGTVTAIQRPRLVAAL-QGKHIVKVTC 4401
Query: 189 GLFHTSVVSSA 199
G HT +S++
Sbjct: 4402 GSAHTLALSTS 4412
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 117/270 (43%), Gaps = 38/270 (14%)
Query: 1 MSQIC--SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
+ Q C SV G S AI G L WG + G + P+ V H
Sbjct: 662 LEQHCVQSVYCGCSYSAAITCGGNLLTWGRG---TYARLGHGNSDDRSLPTLVVALSDHM 718
Query: 59 VVKVACGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
VV VA GS H +AL S G + ++WG + G+LG G+ L+P ++E+ +
Sbjct: 719 VVDVALGSGDAHSLALTSEG--------LVFAWGDGDYGKLGNGNCNGSLQPILVESLPR 770
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V V GS + L+ + ++ C LG QL + Q VP V
Sbjct: 771 -----VQRVFAGSQFSLALSSEGQLYSWGKATC----LGH--QLVERSVQGCSVPRLVSS 819
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L Q+ +V V + H +SS+G+V+ WG +CP AS++ +PIL+S
Sbjct: 820 L-QHKRIVDVAVSVAHCLALSSSGEVFGWGRNDSQQICP-ASVSSEPL--LRTPILVS-- 873
Query: 237 GPHGPKFQDPVQ-VACGAAHTVLVTDDGYK 265
P F P +AC +A +++ T ++
Sbjct: 874 ---LPTF--PASGIACTSAQSLVWTQSSHQ 898
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 11/142 (7%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G GE+ +LGHG T + VP ++ L Q+ + SV CG +++ ++ G++ +WG +
Sbjct: 635 YSWGTGEDHRLGHGDTHARAVPTKIAALEQHC-VQSVYCGCSYSAAITCGGNLLTWG--R 691
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
G A L + D P L+ H V + G AH++ +T +G +++W
Sbjct: 692 GT----YARLGHGNSDDRSLPTLVVALSDH---MVVDVALGSGDAHSLALTSEGL-VFAW 743
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G G LG G P +V
Sbjct: 744 GDGDYGKLGNGNCNGSLQPILV 765
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ ++ G SLA+ AG +W WG D G P P+ G V+ VA
Sbjct: 3230 VVQIECGAQFSLALTRAGEVWTWGKG---DYYRLGHGGDQHVRKPQPIGGLRGRRVIHVA 3286
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ AG+ Y+WG N++GQ G G+ +P ++ D+ + V
Sbjct: 3287 VGALHCLAVTDAGQV--------YAWGDNDHGQQGSGNTFVNKKPALV--IGLDAVF-VN 3335
Query: 124 EVTCGSFHT 132
V CGS H+
Sbjct: 3336 RVACGSSHS 3344
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 36/228 (15%)
Query: 48 PSPVWDFHGHTVVKVA--CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P P+ + + +A C H +A+ S Y SWG + +LG GD +R
Sbjct: 602 PLPMEEVAHEVFISIAGHCEGRHFLAIDSNHNAY--------SWGTGEDHRLGHGDTHAR 653
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
P I Q +VY CG ++A +T T+G G +LGHG +
Sbjct: 654 AVPTKIAALEQHCVQSVY---CGCSYSAAIT--------CGGNLLTWGRGTYARLGHGNS 702
Query: 166 QSALVPEQVKELPQYVYL-VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA 224
+P V L ++ + V++ G H+ ++S G V++WG + G L
Sbjct: 703 DDRSLPTLVVALSDHMVVDVALGSGDAHSLALTSEGLVFAWG-DGDYG-----KLGNGNC 756
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG 272
++ PIL+ P+ Q +V G+ ++ ++ +G +L+SWG+
Sbjct: 757 NGSLQPILVESL----PRVQ---RVFAGSQFSLALSSEG-QLYSWGKA 796
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 32/210 (15%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y WG N+ GQLG G SR++ P E + P ++ G +T P+ L
Sbjct: 4048 YGWGHNHRGQLG-GLEGSRIKTPTPCEALSLLRP---VQLAGGEQSLFAVT----PDGKL 4099
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVW 203
+ G G G+LG G + S +P + L Q+V++ V+V+ G H +++ G+V+
Sbjct: 4100 ----FATGYGSGGRLGVGGSDSWAIPTLLGSL-QHVFVKKVAVNSGGKHCLALTTEGEVY 4154
Query: 204 SWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+WG E G LG S R + + ++ + ++ +ACG+AH+ +T
Sbjct: 4155 AWGEGEDGKLGHGNRMSYDRPKLVEHLNGMSVA-------------DIACGSAHSAAITA 4201
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ L +WG+GR G LG G + D P +V
Sbjct: 4202 SGHVL-TWGKGRYGRLGHGDSEDQLRPKLV 4230
>gi|380018521|ref|XP_003693176.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Apis
florea]
Length = 1081
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 128/296 (43%), Gaps = 54/296 (18%)
Query: 10 GGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTVVKVACG 65
G +LAI+ G L+ WG S+TEG L S +P V VV++ACG
Sbjct: 119 GAYHTLAINEWGQLFSWG------SNTEGQLGLNSKNFMESSPRMVKTLGTSVVVQIACG 172
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPWAVYE 124
+H AL + GE Y SWG+N+ GQLGLG D + ++PK I F P A
Sbjct: 173 MKHAFALTNNGELY--------SWGSNSEGQLGLGTDIKYEIKPKFISAF-IGIPIAF-- 221
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKELPQYVY 182
+ CG +H+ ++ FG G+N GQLG TQ +P Q++ L Q
Sbjct: 222 IACGGYHSIAISKSGA----------VFGWGKNTFGQLGLNDTQDRNLPCQLQTL-QNAK 270
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ CG + ++ G V++ G + G G N L R S +
Sbjct: 271 ICYAACGEEFSVFLTVDGGVFTCGAGMYGQLGHGSNSNEILPRQVMELMGSTV------- 323
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
Q++CG HT+ + ++++WG G +G LG T P +V P
Sbjct: 324 --------TQISCGKRHTLALVPSRGRVYAWGLGGAGQLGNHSTRSVTTPQVVHGP 371
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 39/231 (16%)
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG--DRESRLRPKIIETFNQDS 118
K SE V+A+ +K +D+ C WG+ +G+LGLG + E+ L P+ ++ F + +
Sbjct: 7 KRRLASEPVIAV--EYPLHKKKDMFC--WGSTIHGELGLGGIEDENILIPRELD-FKKAA 61
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH--GTTQSALVPEQVKE 176
+ ++ CG +T ++T ++ G + GQLGH G + L+P
Sbjct: 62 --EIQQIACGENYTVVITQIGE--------IYSCGNNDYGQLGHEKGRKRLQLIPG---- 107
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILIS 234
L +V+ + CG +HT ++ G ++SWG E LGL + SP ++
Sbjct: 108 LDAFVFKKAA-CGAYHTLAINEWGQLFSWGSNTEGQLGLNSKNFMES-------SPRMVK 159
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
G VQ+ACG H +T++G +L+SWG G LG G I +
Sbjct: 160 TLGT-----SVVVQIACGMKHAFALTNNG-ELYSWGSNSEGQLGLGTDIKY 204
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 99/233 (42%), Gaps = 38/233 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ ++ACG + V + GE YS G N+ GQ LG + R R ++I +
Sbjct: 63 IQQIACGENYTVVITQIGEI--------YSCGNNDYGQ--LGHEKGRKRLQLIPGLD--- 109
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKEL 177
+ + CG++HT + N+ + W G GQLG + P VK L
Sbjct: 110 AFVFKKAACGAYHTLAI------NEWGQLFSW--GSNTEGQLGLNSKNFMESSPRMVKTL 161
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISG 235
V +V + CG+ H +++ G+++SWG E LGL + I P IS
Sbjct: 162 GTSV-VVQIACGMKHAFALTNNGELYSWGSNSEGQLGLGTDIKY-------EIKPKFISA 213
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
F +ACG H++ ++ G ++ WG+ G LG T D P
Sbjct: 214 FIGIPIAF-----IACGGYHSIAISKSG-AVFGWGKNTFGQLGLNDTQDRNLP 260
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 29/175 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS---FTPSPVWDFHGHTVV 60
I + GG S+AI +GA++ WG +T G L + P + +
Sbjct: 219 IAFIACGGYHSIAISKSGAVFGWG------KNTFGQLGLNDTQDRNLPCQLQTLQNAKIC 272
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
ACG E V L G ++ GA GQLG G + + P+ + +
Sbjct: 273 YAACGEEFSVFLTVDGGV--------FTCGAGMYGQLGHGSNSNEILPRQVMELMGST-- 322
Query: 121 AVYEVTCGSFHT-ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
V +++CG HT AL+ R R + +GLG GQLG+ +T+S P+ V
Sbjct: 323 -VTQISCGKRHTLALVPSRGR--------VYAWGLGGAGQLGNHSTRSVTTPQVV 368
>gi|301767480|ref|XP_002919156.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like
[Ailuropoda melanoleuca]
Length = 551
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 111/236 (47%), Gaps = 34/236 (14%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
K+AC S H+V + GE + +WG N QLG G L P I T
Sbjct: 99 KIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTTNHGLVPCHIST--N 148
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V EV CGS+H+ +LT E W G +GQ+G G+T + +P +V
Sbjct: 149 LSNKQVTEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGSGSTANQPIPRRVTG 200
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q V++ CG + V + G+V+ WG N L +G+ +P I+
Sbjct: 201 CLQNKVAVNIACGQMCSMAVVNTGEVYVWGYNG------NGQLGLGSSGNQPTPCRIA-- 252
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G + Q +VACG AHT+++TD+G ++++WG G LGTG + PA V+
Sbjct: 253 ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNKSNQSYPAPVI 304
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 110/253 (43%), Gaps = 45/253 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 154 VTEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQPIPRRVTGCLQNK 205
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ CG + + + + +G NGQLG G++ + P ++ L
Sbjct: 206 --VAVNIACGQMCSMAVVNTGE--------VYVWGYNGNGQLGLGSSGNQPTPCRIAAL- 254
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAI-SPILISG 235
Q + + V CG HT V++ G V++WG LG T N++ + +P+++
Sbjct: 255 QGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLG-------TGNKSNQSYPAPVIVE- 306
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFF 286
K + AC +AHT G ++ WG RG+S VL T F
Sbjct: 307 ------KDRIIEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVVLPHLTHFSCTDDVFACF 360
Query: 287 APAIVLWPPLTEE 299
A V W L+ E
Sbjct: 361 ATPAVSWRLLSVE 373
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 19/112 (16%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVVKV 62
++ G M S+A+ N G +++WG + G L SS TP + G V +V
Sbjct: 209 NIACGQMCSMAVVNTGEVYVWG------YNGNGQLGLGSSGNQPTPCRIAALQGIRVQRV 262
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR--ESRLRPKIIE 112
ACG H + L G+ Y +WGAN+ GQLG G++ +S P I+E
Sbjct: 263 ACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPAPVIVE 306
>gi|383453816|ref|YP_005367805.1| RCC1 repeat-containing protein [Corallococcus coralloides DSM 2259]
gi|380728295|gb|AFE04297.1| RCC1 repeat-containing protein [Corallococcus coralloides DSM 2259]
Length = 748
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 124/289 (42%), Gaps = 46/289 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV- 59
++ + ++ AG SLA+ GA+W WG+ T + T SP+ G T
Sbjct: 298 LTDVRTLVAGNYHSLAVRTDGAVWAWGDNRYRQLGT-------GNLTSSPLPLQAGMTGG 350
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V + G H VAL G D +SWG N GQLG E R+ P +
Sbjct: 351 VTLVAGYRHSVAL--------GADGTAWSWGDNVFGQLGDTTFEPRMAPVQVSGLALGRA 402
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ T G HT +L R W +G + GQLG+GT Q + +P V
Sbjct: 403 ----DATSGQLHTVMLGANGR--------LWAWGDNQQGQLGNGTQQDSSLPLPVN---- 446
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
++SV G HT+ + S G VW+WGM + G ++T D +P+ + G G
Sbjct: 447 LTDVISVASGYRHTAALRSDGTVWTWGMNR-FGQLGEGTVT-----DRPTPVQVVGLG-- 498
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+A G H++ + +G +W+WG R G LG G +D P
Sbjct: 499 -----GVTAIATGDNHSLALRSNG-TVWAWGFNRYGQLGDGTAVDRRQP 541
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 115/281 (40%), Gaps = 44/281 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++Q+ SV AG SLA+D GA+W WG+ S G +L S P V VV
Sbjct: 99 LTQVTSVAAGDQYSLALDADGAVWAWGDNA---SGQLGDGTLTSRLLPQRVSAL--SNVV 153
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G HV+AL + D ++WG N N QLG G P + +
Sbjct: 154 SLASGFAHVLALRA--------DGTVWAWGDNRNNQLGDGTLTRSSVPLQVPGLSG---- 201
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V GS AL + W +G GQLG GTT + P QV L
Sbjct: 202 VVAVVAGGSSSLAL---------RADGTLWAWGDNRYGQLGDGTTVRRITPVQVASLDSV 252
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
VSV G +H + + G VW+WG L + R + P+ +S
Sbjct: 253 ---VSVSVGAYHALALRADGTVWAWGHNAYGQLGDGTNTQRTQ------PVSVS------ 297
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
D + G H++ V DG +W+WG R LGTG
Sbjct: 298 --LTDVRTLVAGNYHSLAVRTDG-AVWAWGDNRYRQLGTGN 335
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 122/291 (41%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + ++ G SLA+ + G +W WG G + V P +V
Sbjct: 497 LGGVTAIATGDNHSLALRSNGTVWAWG---FNRYGQLGDGTAVDRRQPVQASGLS--NIV 551
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +AL S D +++G N +GQLG G R L P ++ S
Sbjct: 552 AIAAGGSHSLALRS--------DGTVWAFGYNFDGQLGNGTRTWTLVP--VQAVGLSS-- 599
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + GS ++ L + W +G +GQLG GTTQ + P QV P
Sbjct: 600 -VVSLAAGSLYSLAL--------RADGTVWAWGYNASGQLGVGTTQGSAQPLQV---PGL 647
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ S+ G +H+ + S G VW+WG L S R +SP L++G
Sbjct: 648 SGITSIAAGSYHSLALRSDGWVWAWGFNFEGQLGNGTSTPR------LSPGLVAG----- 696
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ V + G H++ + DG +W+WG G LGTG T + + P V
Sbjct: 697 --MSNAVAIIAGDQHSLAMKADG-TVWAWGLNIKGQLGTGDTTEAWFPVQV 744
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 118/291 (40%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + SV +G + A+ + G +W WG + G ++ TP V G V
Sbjct: 447 LTDVISVASGYRHTAALRSDGTVWTWG---MNRFGQLGEGTVTDRPTPVQVVGLGG--VT 501
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +AL S G ++WG N GQLG G R +P +
Sbjct: 502 AIATGDNHSLALRSNG--------TVWAWGFNRYGQLGDGTAVDRRQPVQASGLSN---- 549
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ + G H+ L + W FG +GQLG+GT LVP Q L
Sbjct: 550 -IVAIAAGGSHSLALRS--------DGTVWAFGYNFDGQLGNGTRTWTLVPVQAVGLSS- 599
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+VS+ G ++ + + G VW+WG + L + P+ +
Sbjct: 600 --VVSLAAGSLYSLALRADGTVWAWGYNA------SGQLGVGTTQGSAQPLQV------- 644
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P +A G+ H++ + DG+ +W+WG G LG G + +P +V
Sbjct: 645 PGLSGITSIAAGSYHSLALRSDGW-VWAWGFNFEGQLGNGTSTPRLSPGLV 694
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 98/232 (42%), Gaps = 38/232 (16%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V++A G H +A+ S D ++WG N GQLG G + P + Q
Sbjct: 53 VRLALGQYHSLAVHS--------DGTVFAWGFNRLGQLGDGTSRDKASPVQVAGLTQ--- 101
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V V G ++ L + W +G +GQLG GT S L+P++V L
Sbjct: 102 --VTSVAAGDQYSLALDA--------DGAVWAWGDNASGQLGDGTLTSRLLPQRVSALSN 151
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
V L S G H + + G VW+WG + L + +LTR+ P+ +
Sbjct: 152 VVSLAS---GFAHVLALRADGTVWAWGDNRNNQLG-DGTLTRSSV-----PLQV------ 196
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P V V G + ++ + DG LW+WG R G LG G T+ P V
Sbjct: 197 -PGLSGVVAVVAGGSSSLALRADG-TLWAWGDNRYGQLGDGTTVRRITPVQV 246
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 122/291 (41%), Gaps = 50/291 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S + +V AGG SLA+ G LW WG+ L D +T V TP V
Sbjct: 199 LSGVVAVVAGGSSSLALRADGTLWAWGDNRYGQLGDGTT------VRRITPVQVASLD-- 250
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+VV V+ G+ H +AL + D ++WG N GQLG G R +P + +
Sbjct: 251 SVVSVSVGAYHALALRA--------DGTVWAWGHNAYGQLGDGTNTQRTQPVSVSLTD-- 300
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + G++H+ L R + W +G QLG G S+ +P Q +
Sbjct: 301 ----VRTLVAGNYHS--LAVRT------DGAVWAWGDNRYRQLGTGNLTSSPLPLQAG-M 347
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
V LV G H+ + + G WSWG + G + + ++P+ +SG
Sbjct: 348 TGGVTLV---AGYRHSVALGADGTAWSWG-DNVFGQLGDTTFEPR-----MAPVQVSG-- 396
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
G HTV++ +G +LW+WG + G LG G D P
Sbjct: 397 ----LALGRADATSGQLHTVMLGANG-RLWAWGDNQQGQLGNGTQQDSSLP 442
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 76/180 (42%), Gaps = 32/180 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S + S+ AG + SLA+ G +W WG + L +T+G S P V G
Sbjct: 597 LSSVVSLAAGSLYSLALRADGTVWAWGYNASGQLGVGTTQG------SAQPLQVPGLSG- 649
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+ +A GS H +AL S G ++WG N GQLG G RL P ++ +
Sbjct: 650 -ITSIAAGSYHSLALRSDGW--------VWAWGFNFEGQLGNGTSTPRLSPGLVAGMSN- 699
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ G H+ + + W +GL GQLG G T A P QV+ +
Sbjct: 700 ----AVAIIAGDQHSLAMKA--------DGTVWAWGLNIKGQLGTGDTTEAWFPVQVQGI 747
>gi|440800739|gb|ELR21774.1| regulator of chromosome condensation (RCC1) repeat domain
containing protein [Acanthamoeba castellanii str. Neff]
Length = 292
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 111/244 (45%), Gaps = 43/244 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV V+CG EH A +WG G+LG GD SR +P + E
Sbjct: 68 VVGVSCGDEHSAVFTEANTVL--------TWGNGTGGRLGTGDEISRTQPVLPEH----- 114
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V +++CGS TA+LT L +TFG+G G+LGHG + LVP+ V+EL
Sbjct: 115 --KVAQISCGSDWTAVLT--------LAGKVFTFGVGSYGKLGHGNDSNQLVPKLVEELD 164
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG-NG 237
+VS+ CG H + ++ GDV++WG N L D+ P+L+ G NG
Sbjct: 165 TE-RVVSLSCGADHMAALNIEGDVFTWGCGG------NGRLGHGSERDSKKPVLVKGMNG 217
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
+ V CG H + T DG +L+ WG G G G ++ L P L
Sbjct: 218 ------LVALTVECGGYHMGVTTLDG-ELYMWGWNVYGQCGLGLHVEN-----QLTPVLV 265
Query: 298 EEFK 301
E+ +
Sbjct: 266 EQLR 269
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 118/264 (44%), Gaps = 45/264 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G S A + WGN T S P H V ++
Sbjct: 67 KVVGVSCGDEHSAVFTEANTVLTWGNGTGGRLGTGDEISRTQPVLPE-------HKVAQI 119
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+CGS+ L AG+ +++G + G+LG G+ ++L PK++E + + V
Sbjct: 120 SCGSDWTAVLTLAGKV--------FTFGVGSYGKLGHGNDSNQLVPKLVEELDTER---V 168
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++CG+ H A L +E +T+G G NG+LGHG+ + + P VK + V
Sbjct: 169 VSLSCGADHMAALN--------IEGDVFTWGCGGNGRLGHGSERDSKKPVLVKGMNGLVA 220
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG----MEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
L +V+CG +H V + G+++ WG + GLGL LT P+L+
Sbjct: 221 L-TVECGGYHMGVTTLDGELYMWGWNVYGQCGLGLHVENQLT---------PVLVE---- 266
Query: 239 HGPKFQDPVQVACGAAHTVLVTDD 262
+ + + VACG +HT+ + +
Sbjct: 267 -QLRGKRVLMVACGESHTMALVSN 289
>gi|224179015|gb|AAI72191.1| hect domain and RLD 2 [synthetic construct]
Length = 2427
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 481 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 532
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 533 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITA--------EGELYTWGRGNYGRLG 584
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 585 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 637
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 638 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 689
Query: 278 GTG 280
G G
Sbjct: 690 GHG 692
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 79/201 (39%), Gaps = 28/201 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 612 SGDAQTLAVTENGQVWSWGDG---DYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 668
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 669 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 717
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 718 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 766
Query: 187 DCGLFHTSVVSSAGDVWSWGM 207
CG + SS + WS G+
Sbjct: 767 ACGPAQSFAWSSCSE-WSIGL 786
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 517 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 576
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 577 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 624
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 625 QVWSWGDGDYGKLGRGGSDGCKTPKLI 651
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 466 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 524
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 525 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 577
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 578 GNYGRLGHGSSEDEAIPMLV 597
>gi|119578071|gb|EAW57667.1| hCG2006901, isoform CRA_d [Homo sapiens]
Length = 1677
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 472 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 523
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 524 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 575
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 576 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 628
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 629 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 680
Query: 278 GTG 280
G G
Sbjct: 681 GHG 683
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 79/201 (39%), Gaps = 28/201 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 603 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 659
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 660 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 708
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 709 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 757
Query: 187 DCGLFHTSVVSSAGDVWSWGM 207
CG + SS + WS G+
Sbjct: 758 ACGPAQSFAWSSCSE-WSIGL 777
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 508 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 567
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 568 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 615
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 616 QVWSWGDGDYGKLGRGGSDGCKTPKLI 642
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 457 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 515
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 516 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 568
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 569 GNYGRLGHGSSEDEAIPMLV 588
>gi|281349737|gb|EFB25321.1| hypothetical protein PANDA_007753 [Ailuropoda melanoleuca]
Length = 527
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 111/236 (47%), Gaps = 34/236 (14%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
K+AC S H+V + GE + +WG N QLG G L P I T
Sbjct: 75 KIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTTNHGLVPCHIST--N 124
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V EV CGS+H+ +LT E W G +GQ+G G+T + +P +V
Sbjct: 125 LSNKQVTEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGSGSTANQPIPRRVTG 176
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q V++ CG + V + G+V+ WG N L +G+ +P I+
Sbjct: 177 CLQNKVAVNIACGQMCSMAVVNTGEVYVWGYNG------NGQLGLGSSGNQPTPCRIA-- 228
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G + Q +VACG AHT+++TD+G ++++WG G LGTG + PA V+
Sbjct: 229 ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNKSNQSYPAPVI 280
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 110/253 (43%), Gaps = 45/253 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 130 VTEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQPIPRRVTGCLQNK 181
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ CG + + + + +G NGQLG G++ + P ++ L
Sbjct: 182 --VAVNIACGQMCSMAVVNTGEV--------YVWGYNGNGQLGLGSSGNQPTPCRIAAL- 230
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAI-SPILISG 235
Q + + V CG HT V++ G V++WG LG T N++ + +P+++
Sbjct: 231 QGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLG-------TGNKSNQSYPAPVIVE- 282
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFF 286
K + AC +AHT G ++ WG RG+S VL T F
Sbjct: 283 ------KDRIIEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVVLPHLTHFSCTDDVFACF 336
Query: 287 APAIVLWPPLTEE 299
A V W L+ E
Sbjct: 337 ATPAVSWRLLSVE 349
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 19/112 (16%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVVKV 62
++ G M S+A+ N G +++WG + G L SS TP + G V +V
Sbjct: 185 NIACGQMCSMAVVNTGEVYVWG------YNGNGQLGLGSSGNQPTPCRIAALQGIRVQRV 238
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR--ESRLRPKIIE 112
ACG H + L G+ Y +WGAN+ GQLG G++ +S P I+E
Sbjct: 239 ACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPAPVIVE 282
>gi|440800160|gb|ELR21203.1| regulator of chromosome condensation (RCC1) repeat domain
containing protein [Acanthamoeba castellanii str. Neff]
Length = 417
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 112/231 (48%), Gaps = 36/231 (15%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+VK+ G +H +AL GE Y WG + GQ GLG++E++ P +E F S
Sbjct: 142 IVKIRTGRQHGIALSKNGEVY--------IWGNSEFGQTGLGNKEAQHLPIRMEFFRDKS 193
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ +V+CG H+A ++ R WT+G G +GQLGH T+ L P+++ +
Sbjct: 194 ---IVDVSCGLDHSAAVSKDGR--------VWTWGYGIDGQLGHNGTEDELKPKELTVI- 241
Query: 179 QYVYLVSVDCGLFHTSVVS-SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ + V CG T +++ + G ++++G + L E G + P ++
Sbjct: 242 RGEGISRVTCGTDFTGLLNETEGRLFTFGNGEA------GQLGHGERGLCLEPSVVP--- 292
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ +VA G AH + +T DG + WSWG G G LG G T DF P
Sbjct: 293 -----LDNVKEVAAGGAHMLALTKDG-QAWSWGWGEDGRLGHGATEDFLKP 337
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 121/293 (41%), Gaps = 46/293 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I ++ G +A+ G +++WGN + G + + P + F ++V V+
Sbjct: 142 IVKIRTGRQHGIALSKNGEVYIWGNSEFGQT---GLGNKEAQHLPIRMEFFRDKSIVDVS 198
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG +H A+ G ++WG +GQLG E L+PK + + +
Sbjct: 199 CGLDHSAAVSKDGRV--------WTWGYGIDGQLGHNGTEDELKPKELTVIRGE---GIS 247
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP-----EQVKELP 178
VTCG+ T LL + E +TFG GE GQLGHG L P + VKE
Sbjct: 248 RVTCGTDFTGLL-------NETEGRLFTFGNGEAGQLGHGERGLCLEPSVVPLDNVKE-- 298
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
V G H ++ G WSWG + + L D + P I GP
Sbjct: 299 -------VAAGGAHMLALTKDGQAWSWGWGE------DGRLGHGATEDFLKPEPIPTLGP 345
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V V+ G H++ +T+ G +++ WG SG LG G P ++
Sbjct: 346 A----VGVVSVSAGGGHSLALTESG-QVYGWGFNASGRLGLGNESSVMTPTLI 393
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 21/141 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ + V AGG LA+ G W WG + L +TE P P+
Sbjct: 293 LDNVKEVAAGGAHMLALTKDGQAWSWGWGEDGRLGHGATE------DFLKPEPIPTLGPA 346
Query: 58 T-VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
VV V+ G H +AL +G+ Y WG N +G+LGLG+ S + P +I+
Sbjct: 347 VGVVSVSAGGGHSLALTESGQV--------YGWGFNASGRLGLGNESSVMTPTLIKALAD 398
Query: 117 DSPWAVYEVTCGSFHTALLTH 137
V CG H+ +T
Sbjct: 399 KR---VLRAICGLDHSLFITQ 416
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 68/181 (37%), Gaps = 43/181 (23%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+T G G N QLG G + +P V+ELP + G ++++ +++ WG
Sbjct: 56 YTCGTGRNAQLGVGDLEDYQLPVPVQELPVGASYIDAAAGWTQNFLLTTRHELYYWGSSG 115
Query: 210 GLGLCPNASLTR---------------------NEAGDAISP---ILISGNGPHGPK--- 242
L P R + G A+S + I GN G
Sbjct: 116 VYALLPMRRDKRIYYPTLCEPAQSLGIVKIRTGRQHGIALSKNGEVYIWGNSEFGQTGLG 175
Query: 243 -------------FQDP--VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
F+D V V+CG H+ V+ DG ++W+WG G G LG T D
Sbjct: 176 NKEAQHLPIRMEFFRDKSIVDVSCGLDHSAAVSKDG-RVWTWGYGIDGQLGHNGTEDELK 234
Query: 288 P 288
P
Sbjct: 235 P 235
>gi|395746465|ref|XP_002825266.2| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
HERC2-like [Pongo abelii]
Length = 4581
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 481 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 532
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 533 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 584
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 585 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 637
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 638 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 689
Query: 278 GTG 280
G G
Sbjct: 690 GHG 692
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 3790 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 3846
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 3847 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 3895
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 3896 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 3946
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 3947 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 3994
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 3995 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4042
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 3839 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 3892
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 3893 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 3943
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 3944 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 3994
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 3995 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4045
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4046 -QGKKVN---RVACGSAHTL 4061
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 118/275 (42%), Gaps = 43/275 (15%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80
G ++ WG D G FS + P + + +ACGS H AL S+GE Y
Sbjct: 2819 GKVFSWGE---GDDGKLGHFSRM----PRLIEALKTKRIRDIACGSSHSAALTSSGELY- 2870
Query: 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKR 140
+WG G+LG GD ++L+PK+++ V +V CGS L
Sbjct: 2871 -------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQVACGSRDAQTLALTD- 2919
Query: 141 PNDMLESMCWTFGLGENGQLGHGT-TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
E + ++ G G+ ++G G + +P+ ++ L + ++CG + ++ +
Sbjct: 2920 -----EGLVFSLGDGDLWKIGPGPEVKGCNIPQNIERL-NGQGVCQIECGAQFSLALTKS 2973
Query: 200 GDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC---GAAHT 256
G VW+WG L + + + P ++ G G K VAC GA H
Sbjct: 2974 GVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-----VACSCSGALHC 3020
Query: 257 VLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ VTD G ++++WG G G G T P +V
Sbjct: 3021 LAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3054
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 111/257 (43%), Gaps = 34/257 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 2849 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 2905
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWA 121
ACGS L E + +S G + ++G G P+ IE N
Sbjct: 2906 ACGSRDAQTLALTDEG------LVFSLGDGDLWKIGPGPEVKGCNIPQNIERLNGQ---G 2956
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V ++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 2957 VCQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGK 3007
Query: 182 YLVSVDC-GLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V+ C G H V+ +G V++WG + G N + T N P L+ G
Sbjct: 3008 KIVACSCSGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QG 3056
Query: 241 PKFQDPVQVACGAAHTV 257
+ Q +VACG++H+V
Sbjct: 3057 LEGQKITRVACGSSHSV 3073
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 126/334 (37%), Gaps = 82/334 (24%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
A G+ S A ++ WG L D GG PS VV+VA GS+
Sbjct: 2699 AAGLESAATIRT-KVFSWG---LNDKDQLGGLKNKKIKVPSFSETLSALNVVQVAGGSKS 2754
Query: 69 VVALVSAGETYK-GE--------------------------------------------- 82
+ A+ G+ Y GE
Sbjct: 2755 LFAVTVEGKVYACGEATKWPAWGLGISSGTVPIPHGXITALSSYVVKKVAVHSGTSQTGF 2814
Query: 83 ---DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRK 139
D +SWG ++G+LG R P++IE + ++ CGS H+A LT
Sbjct: 2815 XPVDGKVFSWGEGDDGKLGHFSR----MPRLIEALKTKR---IRDIACGSSHSAALTS-- 2865
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVS 197
+T+GLGE G+LGHG + L P+ VK L + ++ V CG T ++
Sbjct: 2866 ------SGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH-RVIQVACGSRDAQTLALT 2918
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTV 257
G V+S G + P + G I + NG Q Q+ CGA ++
Sbjct: 2919 DEGLVFSLGDGDLWKIGPGPEVK----GCNIPQNIERLNG------QGVCQIECGAQFSL 2968
Query: 258 LVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+T G +W+WG+G LG G + P +V
Sbjct: 2969 ALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3001
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3692 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 3748
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 3749 ADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 3799
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 3800 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 3850
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 3851 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 3899
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 3900 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 3927
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 612 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 668
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 669 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 717
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 718 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 766
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 767 ACGPAQSFAWSSCSE-WSIGLR 787
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 517 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 576
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 577 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 624
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 625 QVWSWGDGDYGKLGRGGSDGCKTPKLI 651
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3702 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3739
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3740 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 3798
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 3799 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 3845
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 3846 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 3884
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 466 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 524
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 525 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 577
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 578 GNYGRLGHGSSEDEAIPMLV 597
>gi|119578070|gb|EAW57666.1| hCG2006901, isoform CRA_c [Homo sapiens]
Length = 2984
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 472 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 523
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 524 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 575
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 576 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 628
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 629 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 680
Query: 278 GTG 280
G G
Sbjct: 681 GHG 683
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 603 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 659
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 660 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 708
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 709 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 757
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 758 ACGPAQSFAWSSCSE-WSIGLR 778
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 508 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 567
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 568 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 615
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 616 QVWSWGDGDYGKLGRGGSDGCKTPKLI 642
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 457 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 515
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 516 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 568
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 569 GNYGRLGHGSSEDEAIPMLV 588
>gi|119578072|gb|EAW57668.1| hCG2006901, isoform CRA_e [Homo sapiens]
Length = 2948
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 443 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 494
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 495 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 546
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 547 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 599
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 600 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 651
Query: 278 GTG 280
G G
Sbjct: 652 GHG 654
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 574 SGDAQTLAVTENGQVWSWGDG---DYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 630
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 631 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 679
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 680 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 728
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 729 ACGPAQSFAWSSCSE-WSIGLR 749
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 479 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 538
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 539 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 586
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 587 QVWSWGDGDYGKLGRGGSDGCKTPKLI 613
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 428 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 486
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 487 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 539
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 540 GNYGRLGHGSSEDEAIPMLV 559
>gi|41053397|ref|NP_956285.1| RCC1 and BTB domain-containing protein 1 [Danio rerio]
gi|28278439|gb|AAH45877.1| Regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 1 [Danio rerio]
gi|182890896|gb|AAI65711.1| Rcbtb1 protein [Danio rerio]
Length = 531
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 132/294 (44%), Gaps = 36/294 (12%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG-NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+ Q C A ++ I + +++ G NC S+ G S+ P + G +
Sbjct: 21 IRQACIFGASANEAIYITHDDEVYVLGLNC----SNCLGTGDSQSTIAPKKLDCLSGKKL 76
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ ++ GS V LV+ ED Y+WG N QLG G + P ++ T Q
Sbjct: 77 ISLSYGSGPHVLLVT-------EDGELYAWGHNGYSQLGNGTTNQGVSPILVSTNLQGKR 129
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS H+ LTH E + +G GQ+G G+T + P +V Q
Sbjct: 130 --VTEVSCGSHHSLALTH--------EGEVFAWGYNNCGQVGSGSTANQPTPRKVSNCLQ 179
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPI-LISGNGP 238
+V++ CG + V+ G+V+ WG N L G+ ++P LI+ G
Sbjct: 180 NKVIVNIACGQTSSMAVTDNGEVYGWGYNG------NGQLGLGNNGNQLTPCRLIALQGF 233
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+Q+A G AH++ +TD+G L++WG G LGTG + +P V+
Sbjct: 234 ------CVLQIASGYAHSLALTDEGL-LYAWGANTYGQLGTGNKSNQLSPVQVM 280
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS---FTPSPVWDFHGHTVV 60
I ++ G S+A+ + G ++ WG + G L ++ TP + G V+
Sbjct: 183 IVNIACGQTSSMAVTDNGEVYGWG------YNGNGQLGLGNNGNQLTPCRLIALQGFCVL 236
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++A G H +AL G + Y+WGAN GQLG G++ ++L P + T +
Sbjct: 237 QIASGYAHSLALTDEG--------LLYAWGANTYGQLGTGNKSNQLSPVQVMT---EKER 285
Query: 121 AVYEVTCGSFHTA 133
V C S HT+
Sbjct: 286 IVEIAACHSTHTS 298
>gi|356539788|ref|XP_003538375.1| PREDICTED: uncharacterized protein LOC100794953 [Glycine max]
Length = 1046
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 139/309 (44%), Gaps = 42/309 (13%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGN-CPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTVVKVA 63
+V G + A+ ++G ++ WGN D EG S + P + G ++ VA
Sbjct: 360 TVACGEYHTCALTDSGEVYTWGNDVCCADLLNEG--RTRSQWIPQRLGGPLDGISISSVA 417
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H + S G + ++G G LG GD S PK +E+ N V
Sbjct: 418 CGEWHTAIVSSCGRLF--------TYGDGTFGVLGHGDLRSYSSPKEVESLN---GLRVR 466
Query: 124 EVTCGSFHTALLTH----RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
CGS+HTA + R R N + +T+G G+ G+LGH + +VP +V +L
Sbjct: 467 SAACGSWHTAAIVEVMFDRFRYNSASGKL-FTWGDGDEGRLGHVDNGNKIVPTRVTQLVD 525
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
Y + V V CG T +++ G V++ G K L A D + +++ G
Sbjct: 526 YDF-VQVSCGRMLTVALTNMGKVFAMGSAK------YGQLGNPHARDKV--VIVEGQLK- 575
Query: 240 GPKFQDPVQV-ACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTE 298
Q+ V+V + G+ H ++T G +++WGRG G LG G T D + P V E
Sbjct: 576 ----QEFVKVISTGSYHVAVLTSAG-SVYTWGRGEIGQLGLGDTEDRYTPCFV------E 624
Query: 299 EFKQDELNT 307
+ ++NT
Sbjct: 625 ALRDRQVNT 633
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 105/252 (41%), Gaps = 44/252 (17%)
Query: 38 GGFSLVSSFTPS-PVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQ 96
G +SLV S + D H +A G +H + GE + WG G+
Sbjct: 289 GIYSLVPKLLESTAMLDVHN-----IALGGKHAALVTKQGEVF--------CWGQGKWGR 335
Query: 97 LGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGE 156
LG PKI+++ N V V CG +HT LT D E W +
Sbjct: 336 LGQKIDMDISSPKIVDSLN---GLHVKTVACGEYHTCALT------DSGEVYTWGNDVCC 386
Query: 157 NGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPN 216
L G T+S +P+++ + + SV CG +HT++VSS G ++++G + G+ +
Sbjct: 387 ADLLNEGRTRSQWIPQRLGGPLDGISISSVACGEWHTAIVSSCGRLFTYG-DGTFGVLGH 445
Query: 217 ASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY----------KL 266
L + + + +G + + ACG+ HT + + + KL
Sbjct: 446 GDLRSYSSPKEVESL-------NGLRVRS---AACGSWHTAAIVEVMFDRFRYNSASGKL 495
Query: 267 WSWGRGRSGVLG 278
++WG G G LG
Sbjct: 496 FTWGDGDEGRLG 507
>gi|47221092|emb|CAG12786.1| unnamed protein product [Tetraodon nigroviridis]
Length = 527
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 113/250 (45%), Gaps = 29/250 (11%)
Query: 42 LVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD 101
L S+ P + G +V ++ G+ VA+ +A D +SWG N QLG G
Sbjct: 59 LQSTIEPRRIDALCGKKIVSLSYGTGPHVAIATA-------DGEVFSWGHNGYSQLGNGT 111
Query: 102 RESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
L P ++ T V EV CGS HT LT + + +G +GQ+G
Sbjct: 112 TNHGLTPALVSTNLLGKR--VIEVACGSHHTIALT--------TDGEVFAWGYNNSGQVG 161
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTR 221
G+T + P +V Q +V++ CG + V +G+++ WG N L
Sbjct: 162 SGSTANQPTPRRVSSCLQNKAVVNIACGQLCSMAVLDSGEIYGWGYN------CNGQLGL 215
Query: 222 NEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
G+ +P I+ + +QVACG AHT+ +TD+G+ +++WG G LGTG
Sbjct: 216 GNNGNQQTPCRIA-----ALQGVSVIQVACGYAHTLALTDEGF-VYAWGANSYGQLGTGN 269
Query: 282 TIDFFAPAIV 291
+ P ++
Sbjct: 270 KCNQALPTLI 279
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWG-NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+ ++ G + S+A+ ++G ++ WG NC G + TP + G +V++V
Sbjct: 183 VVNIACGQLCSMAVLDSGEIYGWGYNCNGQLGLGNNG----NQQTPCRIAALQGVSVIQV 238
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG H +AL G Y+WGAN+ GQLG G++ ++ P +I N D
Sbjct: 239 ACGYAHTLALTDEG--------FVYAWGANSYGQLGTGNKCNQALPTLI---NTDKERMA 287
Query: 123 YEVTCGSFHTA 133
C + HT+
Sbjct: 288 EVAACHTSHTS 298
>gi|219847606|ref|YP_002462039.1| chromosome condensation regulator RCC1 [Chloroflexus aggregans DSM
9485]
gi|219541865|gb|ACL23603.1| regulator of chromosome condensation RCC1 [Chloroflexus aggregans
DSM 9485]
Length = 784
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 117/290 (40%), Gaps = 39/290 (13%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S + ++ AGG + A+ ++G +W WG DS G S + TP V V
Sbjct: 264 SGVTAIAAGGRYTCALTSSGGVWCWGR---NDSGQLGDGSFTNRSTPGAVGGLP-SGVTA 319
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+A G H AL S+G + WG N++GQLG G R P + P
Sbjct: 320 IAAGGAHTCALTSSGGV--------WCWGGNDSGQLGDGSYTDRSTPGAVSGL----PSG 367
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V + G HT T W +G GQLG GTT P V LP V
Sbjct: 368 VTAIAAGGAHTCARTSSGG--------VWCWGGNFYGQLGDGTTTDRSTPGAVSGLPSGV 419
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++ G +HT ++ + VW WG + G + + T A+S + P G
Sbjct: 420 TAIAA--GNYHTCALTGSDGVWCWG-DNFYGQLGDGTTTNRSTPGAVSGL------PSGV 470
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A G HT +T G +W WGR SG LG G T + P V
Sbjct: 471 T-----AIAAGNYHTCALTSSG-GVWCWGRNDSGQLGDGTTTNRSTPGAV 514
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 120/290 (41%), Gaps = 39/290 (13%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S + ++ AG + A+ ++G +W WG DS G + + TP V V
Sbjct: 468 SGVTAIAAGNYHTCALTSSGGVWCWGR---NDSGQLGDGTTTNRSTPGAVGGLP-SGVTA 523
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+A G H AL+S+G + WG NN GQLG G P + P
Sbjct: 524 IAAGDYHTCALMSSGGVW--------CWGLNNRGQLGDGSYTDSSTPVAVGGL----PSG 571
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V + G++HT LT W +G +GQLG GTT + P V LP V
Sbjct: 572 VMAIAAGNYHTCALTGSDG--------VWCWGTNSDGQLGDGTTTNRSTPVAVSGLPSGV 623
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++ G +HT ++S+G VW WG L + R+ G A+S + P G
Sbjct: 624 TAIAA--GNYHTCALTSSGGVWCWGYNLSGQLGDGTTTNRSTPG-AVSGL------PSGV 674
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A G HT +T G +W WG G LG G T + P V
Sbjct: 675 T-----AIAAGDEHTCALTGSG-GVWCWGDNYYGQLGDGTTTNRSTPGAV 718
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 118/291 (40%), Gaps = 39/291 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + ++ AG + A+ +G +W WG S G S TP V V
Sbjct: 59 LQGVTAIAAGSWHTCALTGSGEVWCWG---YNWSGQLGDGSYTDRSTPVAVSGLP-SGVT 114
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H AL S+G ++C WG N GQLG G R P + P
Sbjct: 115 AIAAGGAHTCALTSSG------GVMC--WGGNYFGQLGDGSYTDRSTPVAVSGL----PS 162
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G HT L M W +G +GQLG G+T + P V LP
Sbjct: 163 GVTAIAAGGAHTCAL--------MSSGGVWCWGYNLSGQLGDGSTIYHITPVAVSGLPSE 214
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
V ++ G HT ++ +G VW WG + G G + S T D+ +P + G P G
Sbjct: 215 VTAIAA--GYAHTCALTGSGGVWCWG-DNGFGQLGDGSFT-----DSSTPAAVGGL-PSG 265
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A G +T +T G +W WGR SG LG G + P V
Sbjct: 266 VT-----AIAAGGRYTCALTSSG-GVWCWGRNDSGQLGDGSFTNRSTPGAV 310
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 115/293 (39%), Gaps = 45/293 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
S + ++ AGG + A+ ++G +W WG + L D ST + TP V
Sbjct: 162 SGVTAIAAGGAHTCALMSSGGVWCWGYNLSGQLGDGST------IYHITPVAVSGLP-SE 214
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +A G H AL +G + WG N GQLG G P +
Sbjct: 215 VTAIAAGYAHTCALTGSGGV--------WCWGDNGFGQLGDGSFTDSSTPAAVGGL---- 262
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P V + G +T LT W +G ++GQLG G+ + P V LP
Sbjct: 263 PSGVTAIAAGGRYTCALTSSGG--------VWCWGRNDSGQLGDGSFTNRSTPGAVGGLP 314
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
V ++ G HT ++S+G VW WG + L D +P +SG P
Sbjct: 315 SGVTAIAA--GGAHTCALTSSGGVWCWGGND------SGQLGDGSYTDRSTPGAVSGL-P 365
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G +A G AHT T G +W WG G LG G T D P V
Sbjct: 366 SGVT-----AIAAGGAHTCARTSSG-GVWCWGGNFYGQLGDGTTTDRSTPGAV 412
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 116/294 (39%), Gaps = 47/294 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSS-TEGGFSLVSSFTPSPVWDFHGH 57
S + ++ AGG + A+ ++G + WG L D S T+ + S PS
Sbjct: 111 SGVTAIAAGGAHTCALTSSGGVMCWGGNYFGQLGDGSYTDRSTPVAVSGLPSG------- 163
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V +A G H AL+S+G + WG N +GQLG G + P +
Sbjct: 164 -VTAIAAGGAHTCALMSSGGV--------WCWGYNLSGQLGDGSTIYHITPVAVSGL--- 211
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P V + G HT LT W +G GQLG G+ + P V L
Sbjct: 212 -PSEVTAIAAGYAHTCALTGSGG--------VWCWGDNGFGQLGDGSFTDSSTPAAVGGL 262
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P V ++ G +T ++S+G VW WG G + S T A+ +
Sbjct: 263 PSGVTAIAA--GGRYTCALTSSGGVWCWGRND-SGQLGDGSFTNRSTPGAVGGL------ 313
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P G +A G AHT +T G +W WG SG LG G D P V
Sbjct: 314 PSGVT-----AIAAGGAHTCALTSSG-GVWCWGGNDSGQLGDGSYTDRSTPGAV 361
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 97/248 (39%), Gaps = 61/248 (24%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S + ++ AG + A+ ++G +W WG L + G S S TP V V+
Sbjct: 519 SGVTAIAAGDYHTCALMSSGGVWCWG---LNNRGQLGDGSYTDSSTPVAVGGLP-SGVMA 574
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+A G+ H AL G D V + WG N++GQLG G +R P + P
Sbjct: 575 IAAGNYHTCAL-------TGSDGV-WCWGTNSDGQLGDGTTTNRSTPVAVSGL----PSG 622
Query: 122 VYEVTCGSFHTALLT----------------------HRKRPNDML-------------E 146
V + G++HT LT +R P + E
Sbjct: 623 VTAIAAGNYHTCALTSSGGVWCWGYNLSGQLGDGTTTNRSTPGAVSGLPSGVTAIAAGDE 682
Query: 147 SMC--------WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSS 198
C W +G GQLG GTT + P V LP V ++ G++HT ++
Sbjct: 683 HTCALTGSGGVWCWGDNYYGQLGDGTTTNRSTPGAVSGLPSGVTAIAA--GVYHTCALTG 740
Query: 199 AGDVWSWG 206
+G V WG
Sbjct: 741 SGGVMCWG 748
>gi|432889733|ref|XP_004075335.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like [Oryzias
latipes]
Length = 527
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 113/251 (45%), Gaps = 31/251 (12%)
Query: 42 LVSSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG 100
L S+ P + G +V ++ G+ HVV + GE + +WG N QLG G
Sbjct: 59 LQSTIEPRRIDVLCGKKIVSLSYGTGPHVVIATADGEVF--------AWGHNGYSQLGNG 110
Query: 101 DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQL 160
L P ++ T V EV CGS HT LT + + +G +GQ+
Sbjct: 111 TTNHGLTPALVST--NLLGKRVTEVACGSHHTIALT--------ADGEVFAWGYNNSGQV 160
Query: 161 GHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
G G+T + P +V Q +V+V CG + V G+++ WG N L
Sbjct: 161 GSGSTANQPTPRRVSSCLQSKVVVNVGCGQLCSMAVLDNGEIYGWGYN------CNGQLG 214
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
G+ +P I+ + + VQVACG AHT+ +TD+G+ +++WG G LGTG
Sbjct: 215 LGNNGNQQTPCRIA-----ALQGVNVVQVACGYAHTLALTDEGF-VYAWGANSYGQLGTG 268
Query: 281 KTIDFFAPAIV 291
+ P ++
Sbjct: 269 NKSNQALPTLI 279
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 16/131 (12%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWG-NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+ +V G + S+A+ + G ++ WG NC G + TP + G VV+V
Sbjct: 183 VVNVGCGQLCSMAVLDNGEIYGWGYNCNGQLGLGNNG----NQQTPCRIAALQGVNVVQV 238
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG H +AL G Y+WGAN+ GQLG G++ ++ P +I N D V
Sbjct: 239 ACGYAHTLALTDEG--------FVYAWGANSYGQLGTGNKSNQALPTLI---NTDKERMV 287
Query: 123 YEVTCGSFHTA 133
C + HT+
Sbjct: 288 EVAACHTSHTS 298
>gi|426231471|ref|XP_004009762.1| PREDICTED: E3 ISG15--protein ligase HERC5 [Ovis aries]
Length = 963
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 96/204 (47%), Gaps = 23/204 (11%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G SLA+ G L+ WG D G S+ TP V + G +V+++
Sbjct: 154 IIQITCGDYHSLALSKGGELFAWGQN--LDGQLGVGRIFASTSTPEIVENLSGVPLVQIS 211
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G H +AL +G YSWG N+ GQLGLG ++ P IE + V
Sbjct: 212 AGEAHSMALSMSGNV--------YSWGRNDCGQLGLGHTYNKDSPSCIEALDDQK---VE 260
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
+ CG HTALLT + +TFG G+ GQLGH +TQ+ L P V L +
Sbjct: 261 FLACGGSHTALLTK--------SGLVFTFGDGKYGQLGHNSTQNELRPCLVAGLVGN-RV 311
Query: 184 VSVDCGLFHT-SVVSSAGDVWSWG 206
+ CG HT + VS G V+S+G
Sbjct: 312 TQIACGRQHTLAYVSDMGKVFSFG 335
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 113/239 (47%), Gaps = 34/239 (14%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRLRPKIIETFNQ 116
++++ CG H +AL GE + +WG N +GQLG+G S P+I+E
Sbjct: 153 NIIQITCGDYHSLALSKGGELF--------AWGQNLDGQLGVGRIFASTSTPEIVENL-- 202
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S + +++ G H+ L+ + +++G + GQLG G T + P ++
Sbjct: 203 -SGVPLVQISAGEAHSMALS--------MSGNVYSWGRNDCGQLGLGHTYNKDSPSCIEA 253
Query: 177 LP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q V ++ CG HT++++ +G V+++G K L N + + P L++G
Sbjct: 254 LDDQKVEFLA--CGGSHTALLTKSGLVFTFGDGK------YGQLGHNSTQNELRPCLVAG 305
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
+ Q+ACG HT+ D K++S+G G+ G LG G T + P + P
Sbjct: 306 LVGN-----RVTQIACGRQHTLAYVSDMGKVFSFGSGKEGQLGNGGTCNQLMPRPMKLP 359
>gi|148234239|ref|NP_001080313.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 2 [Xenopus laevis]
gi|28278605|gb|AAH44119.1| Chc1l-prov protein [Xenopus laevis]
Length = 526
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 125/295 (42%), Gaps = 39/295 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ Q C AG + N M N S G S P + G +V
Sbjct: 21 IQQACVFGAGNEVLYITKNDEVFVMGTN----SSGCLGTGDAQSIIEPRRIDMLSGKRIV 76
Query: 61 KVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET--FNQD 117
++ GS HVV + S GE Y SWG N QLG G L P + T N+
Sbjct: 77 SLSYGSGPHVVIVTSDGEVY--------SWGHNAYSQLGNGSTNQALSPCQVSTNLINKK 128
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ + V CGS H+ +LT + + +G +GQ+G G+T + +P +V
Sbjct: 129 A----HSVACGSHHSMVLT--------CDGEVYAWGYNNSGQVGSGSTANQPIPRKVTSC 176
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
Q ++ + CG + V G+V++WG N L +G+ +P I+
Sbjct: 177 LQNKTVIGIACGQMSSMAVVDNGEVYAWGYNG------NGQLGLGSSGNQPTPCRIA--A 228
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G + + QV CG AHT+ +TD+G +++WG G LGTG + P V+
Sbjct: 229 LQGIRVE---QVVCGYAHTLALTDEGV-MYAWGANSYGQLGTGNKSNQSYPVQVI 279
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 102/251 (40%), Gaps = 47/251 (18%)
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VACGS H + L GE Y +WG NN+GQ+G G ++ P+ + + Q+
Sbjct: 132 VACGSHHSMVLTCDGEVY--------AWGYNNSGQVGSGSTANQPIPRKVTSCLQNK--T 181
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V + CG + + D E W G NGQLG G++ + P ++ L Q +
Sbjct: 182 VIGIACGQMSSMAVV------DNGEVYAW--GYNGNGQLGLGSSGNQPTPCRIAAL-QGI 232
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ V CG HT ++ G +++WG + G G N S D + I+
Sbjct: 233 RVEQVVCGYAHTLALTDEGVMYAWGANSYGQLGTGNKSNQSYPVQVIVDKERIVEIA--- 289
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF---------FAP 288
AC ++HT +++ WG+ R + T F F+
Sbjct: 290 ------------ACHSSHTSAAKSQSGQVYMWGQCRGQSVITPHLTHFSCTDDVFACFST 337
Query: 289 AIVLWPPLTEE 299
++W L+ E
Sbjct: 338 PAIMWRLLSVE 348
>gi|114598774|ref|XP_001175007.1| PREDICTED: E3 ISG15--protein ligase HERC5-like, partial [Pan
troglodytes]
Length = 207
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 89/187 (47%), Gaps = 22/187 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G SLA+ G L+ WG G S+ TP V G + ++
Sbjct: 43 KIIQITCGDYHSLALSKGGELFAWGQNLHGQLGV--GRKFPSTTTPQIVEHLAGVPLAQI 100
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL +G Y SWG N GQLGLG ES+ P +IE + V
Sbjct: 101 SAGEAHSMALSMSGNIY--------SWGKNEFGQLGLGHTESKDYPSLIEGLDNQK---V 149
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
V CG H+ALLT + + +TFG G++GQLGH +TQ+ L P V EL +Y
Sbjct: 150 EFVACGGSHSALLTQ--------DGLLFTFGAGKHGQLGHNSTQNELRPCLVAELVEY-R 200
Query: 183 LVSVDCG 189
+ + CG
Sbjct: 201 VTQIACG 207
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++TCG +H+ L+ E W G +GQLG G + Q+ E V
Sbjct: 44 IIQITCGDYHSLALSKGG------ELFAW--GQNLHGQLGVGRKFPSTTTPQIVEHLAGV 95
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
L + G H+ +S +G+++SWG + L E+ D P LI G
Sbjct: 96 PLAQISAGEAHSMALSMSGNIYSWGKNE----FGQLGLGHTESKDY--PSLIEGLDNQKV 149
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+F VACG +H+ L+T DG L+++G G+ G LG T + P +V
Sbjct: 150 EF-----VACGGSHSALLTQDGL-LFTFGAGKHGQLGHNSTQNELRPCLV 193
>gi|395848168|ref|XP_003796731.1| PREDICTED: RCC1 and BTB domain-containing protein 2 [Otolemur
garnettii]
Length = 551
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 115/250 (46%), Gaps = 31/250 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + G + ++ GS HVV + GE + +WG N QLG G
Sbjct: 85 STIEPRKLDSLSGKKIACLSYGSGPHVVLATTEGEVF--------TWGHNAYSQLGNGTT 136
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 137 NHGLVPCHIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 186
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q +V++ CG + V G+V+ WG N L
Sbjct: 187 GSTANQPIPRRVTGCLQNKVIVTIACGQMCSMAVVDTGEVFVWGYNG------NGQLGLG 240
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+G+ +P I+ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 241 SSGNQPTPCRIA--ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNK 294
Query: 283 IDFFAPAIVL 292
+ P V+
Sbjct: 295 SNQSYPTPVV 304
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 49/255 (19%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 154 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQPIPRRVTGCLQNK 205
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ + CG + + D E W G NGQLG G++ + P ++ L
Sbjct: 206 --VIVTIACGQMCSMAVV------DTGEVFVW--GYNGNGQLGLGSSGNQPTPCRIAAL- 254
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAI-SPILISG 235
Q + + V CG HT V++ G V++WG LG T N++ + +P+++
Sbjct: 255 QGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLG-------TGNKSNQSYPTPVVVE- 306
Query: 236 NGPHGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTID 284
+D V AC +AHT G ++ WG RG+S VL T
Sbjct: 307 --------KDRVIEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVVLPYLTHFSCTDDVFA 358
Query: 285 FFAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 359 CFATPAVTWRLLSVE 373
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
I ++ G M S+A+ + G +++WG + G L SS TP + G V
Sbjct: 207 IVTIACGQMCSMAVVDTGEVFVWG------YNGNGQLGLGSSGNQPTPCRIAALQGIRVQ 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 261 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYP 300
>gi|357439465|ref|XP_003590009.1| Serine/threonine protein kinase Nek9 [Medicago truncatula]
gi|355479057|gb|AES60260.1| Serine/threonine protein kinase Nek9 [Medicago truncatula]
Length = 1080
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 130/301 (43%), Gaps = 39/301 (12%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + V G + A+ +G L+ WG+ G + S GH VV
Sbjct: 314 ITSVSFVACGEYHTCAVSISGDLYTWGDGTHNAGILGHGTDVSHSIPKRVTGPLEGHQVV 373
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+ACG+ H + S G+ +++G G LG GDRES PK ++ S
Sbjct: 374 SIACGAWHTALITSNGK--------LFTFGDGTLGVLGHGDRESVAYPKELQLL---SGH 422
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESM--------CWTFGLGENGQLGHGTTQSALVPE 172
+V CG +HTA + ND S +T+G G+ +LGH ++ L P
Sbjct: 423 KAVKVACGVWHTAAIIEV---NDQSGSSSNTSSSKKLFTWGDGDQYRLGHANKETYLQPT 479
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
V L Y +L V CG T ++++G V++ G K G N + D PIL
Sbjct: 480 CVAALADYNFL-QVACGHSLTVALTASGHVFTMG-SKAYGQLGNPT------SDGKVPIL 531
Query: 233 ISGNGPHGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ K Q +++CG H ++T +L++WGRG +G LG G D P +
Sbjct: 532 VRD------KLQGETVEEISCGTHHVAVLTSRS-ELYTWGRGANGRLGHGDIEDQKTPIL 584
Query: 291 V 291
V
Sbjct: 585 V 585
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 130/293 (44%), Gaps = 48/293 (16%)
Query: 17 IDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTVVKVACGSEHVVAL 72
I++ G +++WG +S++G S V S P P+ V + G H+ +
Sbjct: 219 IESLGDVFIWGEVWAEGNSSDGLGSQVPSKIDMLIPKPLESDVVLDVNYIEPGVSHIALV 278
Query: 73 VSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHT 132
GE + +WG ++ G+LG G + +P+++++ S V V CG +HT
Sbjct: 279 TRQGEIF--------TWGEDSGGRLGHGFDKDYGKPRLVDSLAITS---VSFVACGEYHT 327
Query: 133 ALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
++ + +T+G G + G LGHGT S +P++V + +VS+ CG
Sbjct: 328 CAVS--------ISGDLYTWGDGTHNAGILGHGTDVSHSIPKRVTGPLEGHQVVSIACGA 379
Query: 191 FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
+HT++++S G ++++G + LG+ + R L+SG+ V+VA
Sbjct: 380 WHTALITSNGKLFTFG-DGTLGVLGHGD--RESVAYPKELQLLSGH--------KAVKVA 428
Query: 251 CGAAHTVLVTD------------DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
CG HT + + KL++WG G LG + P V
Sbjct: 429 CGVWHTAAIIEVNDQSGSSSNTSSSKKLFTWGDGDQYRLGHANKETYLQPTCV 481
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 23/174 (13%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
L+ WG+ D G + + P+ V + ++VACG VAL ++G +
Sbjct: 456 LFTWGDG---DQYRLGHANKETYLQPTCVAALADYNFLQVACGHSLTVALTASGHVF--- 509
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPN 142
+ G+ GQLG + ++ P ++ Q V E++CG+ H A+LT R
Sbjct: 510 -----TMGSKAYGQLGNPTSDGKV-PILVRDKLQGE--TVEEISCGTHHVAVLTSR---- 557
Query: 143 DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
S +T+G G NG+LGHG + P V+ L + ++ ++ CG T+ +
Sbjct: 558 ----SELYTWGRGANGRLGHGDIEDQKTPILVEALKER-HVKNIACGANFTTCI 606
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
G TV +++CG+ HV L S E Y+WG NG+LG GD E + P ++E
Sbjct: 536 LQGETVEEISCGTHHVAVLTSRSE--------LYTWGRGANGRLGHGDIEDQKTPILVEA 587
Query: 114 FNQDSPWAVYEVTCGS-FHTALLTHR 138
+ V + CG+ F T + H+
Sbjct: 588 LKERH---VKNIACGANFTTCICIHK 610
>gi|414585739|tpg|DAA36310.1| TPA: putative regulator of chromosome condensation (RCC1) family
protein [Zea mays]
Length = 1044
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 132/292 (45%), Gaps = 38/292 (13%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLP---DSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
V G + A+ +G L WG P DS + F+P G +VVK+A
Sbjct: 321 VAYGSKHTCAVTVSGELIEWGEGPYMGQLDSYARNQWFPHKLFSP-----LDGISVVKIA 375
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H + S+G+ Y ++G G LG GD + RPK +E+ V
Sbjct: 376 CGPWHTAIITSSGQLY--------TYGDGTFGVLGHGDTQGTTRPKEVESLKGSR---VK 424
Query: 124 EVTCGSFHTALLTH--RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V CG +HTA + ++ S +T+G + G+LGH + L+P V L Y
Sbjct: 425 CVACGPWHTAAIVEVISDFKSNSPRSKLFTWGDADRGKLGHADKKMKLIPTCVDSLTDYD 484
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ + V CG T +S G V++ G M LG P+A + A+ +L S H
Sbjct: 485 F-IQVSCGTALTVALSVTGVVFTSGSSMHGQLGN-PHAD---GKTVSAVEGLLKSEFVRH 539
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ G++H +VT +G K+++WG+G+ G LG G ++ P +V
Sbjct: 540 ---------ISSGSSHVAVVTTNG-KVFTWGKGKEGQLGLGDFLNRSTPTLV 581
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 43/140 (30%)
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILIS-------- 234
S+ CG H ++++ G+V+SWG E +G N ++R + +++ + +
Sbjct: 268 SIACGETHAAIITKQGEVYSWGNESSGRIGNQVNIKVSRPKVVQSLASLHVKDVAYGSKH 327
Query: 235 -------------GNGPH-------------GPKFQDP------VQVACGAAHTVLVTDD 262
G GP+ K P V++ACG HT ++T
Sbjct: 328 TCAVTVSGELIEWGEGPYMGQLDSYARNQWFPHKLFSPLDGISVVKIACGPWHTAIITSS 387
Query: 263 GYKLWSWGRGRSGVLGTGKT 282
G +L+++G G GVLG G T
Sbjct: 388 G-QLYTYGDGTFGVLGHGDT 406
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 94/242 (38%), Gaps = 59/242 (24%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + G + I ++G L+ +G+ L T+G + P V G V
Sbjct: 371 VVKIACGPWHTAIITSSGQLYTYGDGTFGVLGHGDTQG------TTRPKEVESLKGSRVK 424
Query: 61 KVACGSEHVVALVSAGETYKGED--LVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VACG H A+V +K ++WG + G+LG D++ +L P +++ +
Sbjct: 425 CVACGPWHTAAIVEVISDFKSNSPRSKLFTWGDADRGKLGHADKKMKLIPTCVDSL---T 481
Query: 119 PWAVYEVTCGSFHTALLT------------HRKRPND------------MLES------- 147
+ +V+CG+ T L+ H + N +L+S
Sbjct: 482 DYDFIQVSCGTALTVALSVTGVVFTSGSSMHGQLGNPHADGKTVSAVEGLLKSEFVRHIS 541
Query: 148 -------------MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTS 194
+T+G G+ GQLG G + P V L + ++ S+ CG +T+
Sbjct: 542 SGSSHVAVVTTNGKVFTWGKGKEGQLGLGDFLNRSTPTLVDAL-EGRHVESLSCGYNYTA 600
Query: 195 VV 196
V
Sbjct: 601 AV 602
>gi|383455292|ref|YP_005369281.1| hypothetical protein COCOR_03305 [Corallococcus coralloides DSM
2259]
gi|380729146|gb|AFE05148.1| hypothetical protein COCOR_03305 [Corallococcus coralloides DSM
2259]
Length = 744
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 131/288 (45%), Gaps = 43/288 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + S+ +G S+A+ + G +W WG D G +L + P V G V
Sbjct: 93 LSGMVSIDSGDDFSMAVRSDGTVWAWGRN---DDGQLGDGTLSTRGDPVQVQGLSG--VT 147
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+ H +AL Y G ++WGAN++GQLG G +R P+++ +
Sbjct: 148 TVALGATHSLALC-----YDGS---VWAWGANDHGQLGDGTSIARRTPQMVAGLQE---- 195
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V G+ H+ + + + W +G +GQLG GTT + VP ++ L
Sbjct: 196 -VVAVAAGANHSLAV--------LSDGTVWAWGENYDGQLGDGTTVTRRVPVPIQGLSG- 245
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V+V G H+ + G+VW+WG L +SL+R+ SP+ ++
Sbjct: 246 --IVAVASGTSHSLALRYDGNVWAWGSNYSGQLGDGSSLSRS------SPVQVT------ 291
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ V V G +++ V DG +W+WG G LG G TI P
Sbjct: 292 -ELSGIVSVEGGPDYSMAVRYDG-TVWTWGINTYGQLGDGTTIARSVP 337
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 129/297 (43%), Gaps = 55/297 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ ++ +V AG SLA+ + G +W WG + L D +T V+ P P+ G
Sbjct: 193 LQEVVAVAAGANHSLAVLSDGTVWAWGENYDGQLGDGTT------VTRRVPVPIQGLSG- 245
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V VA G+ H +AL Y G ++WG+N +GQLG G SR P + +
Sbjct: 246 -IVAVASGTSHSLAL-----RYDGN---VWAWGSNYSGQLGDGSSLSRSSPVQVTELS-- 294
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ V G ++ + + + WT+G+ GQLG GTT + VP Q L
Sbjct: 295 ---GIVSVEGGPDYSMAVRY--------DGTVWTWGINTYGQLGDGTTIARSVPVQTSGL 343
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+V+V G H + + +W+WG + GD + S
Sbjct: 344 SG---VVAVAAGRTHALAMRANNSIWAWGGN-----------VNGQRGDESRSVYFS--- 386
Query: 238 PHGPK--FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
P+ + V +A H++ V DG LW+WG G LG G T + +APA VL
Sbjct: 387 ---PRTILNEVVTMAATNDHSLAVRSDG-GLWAWGANNEGQLGDGTTKNRWAPAEVL 439
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 96/210 (45%), Gaps = 30/210 (14%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
D ++WG N++GQLG G +R P ++ + V V G+ H+ L +
Sbjct: 111 SDGTVWAWGRNDDGQLGDGTLSTRGDPVQVQGLS-----GVTTVALGATHSLALCY---- 161
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ W +G ++GQLG GT+ + P+ V L + +V+V G H+ V S G
Sbjct: 162 ----DGSVWAWGANDHGQLGDGTSIARRTPQMVAGLQE---VVAVAAGANHSLAVLSDGT 214
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
VW+WG L ++TR P+ I G V VA G +H++ +
Sbjct: 215 VWAWGENYDGQLGDGTTVTRRV------PVPIQG-------LSGIVAVASGTSHSLALRY 261
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
DG +W+WG SG LG G ++ +P V
Sbjct: 262 DG-NVWAWGSNYSGQLGDGSSLSRSSPVQV 290
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 126/294 (42%), Gaps = 51/294 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++++ ++ A SLA+ + G LW WG L D +T+ + + P+ V
Sbjct: 391 LNEVVTMAATNDHSLAVRSDGGLWAWGANNEGQLGDGTTK------NRWAPAEVLG---- 440
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV VA G H +A+ +D ++WG+N GQLG G SR P + +
Sbjct: 441 NVVSVAAGRRHSLAVR--------DDGSLWAWGSNTVGQLGDGTGSSRTIPMQVPGIS-- 490
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ V GS ++ L + + W +G GQLG GTT + VP +V+ L
Sbjct: 491 ---GIASVAAGSDYSVALRYDR--------TLWAWGENSYGQLGDGTTVNRHVPTRVQGL 539
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+V++ G H V S G VW+WG L ++ R +P+ +
Sbjct: 540 SG---IVAIATGNGHMLAVRSNGTVWAWGDNSSGQLGDGTTINR------ATPVQVQ--- 587
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GAAH++ V DG LW+WG + LG G I P V
Sbjct: 588 ----VLSGIVAVAAGAAHSLAVRYDG-TLWAWGINNTSQLGDGTGIPRLVPTQV 636
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 120/291 (41%), Gaps = 47/291 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + +V AG +LA+ ++W WG + G S F+P + + VV
Sbjct: 343 LSGVVAVAAGRTHALAMRANNSIWAWGGNV---NGQRGDESRSVYFSPRTILN----EVV 395
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A ++H +A+ S G ++WGANN GQLG G ++R P E
Sbjct: 396 TMAATNDHSLAVRSDGG--------LWAWGANNEGQLGDGTTKNRWAPA--EVLGN---- 441
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V G H+ L R + W +G GQLG GT S +P QV P
Sbjct: 442 -VVSVAAGRRHS--LAVRD------DGSLWAWGSNTVGQLGDGTGSSRTIPMQV---PGI 489
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ SV G ++ + +W+WG L ++ R+ P + G
Sbjct: 490 SGIASVAAGSDYSVALRYDRTLWAWGENSYGQLGDGTTVNRHV------PTRVQG----- 538
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V +A G H + V +G +W+WG SG LG G TI+ P V
Sbjct: 539 --LSGIVAIATGNGHMLAVRSNG-TVWAWGDNSSGQLGDGTTINRATPVQV 586
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 114/278 (41%), Gaps = 43/278 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + SV AG SLA+ + G+LW WG+ + G S P V G +
Sbjct: 439 LGNVVSVAAGRRHSLAVRDDGSLWAWGSNTVGQLGDGTGSSRT---IPMQVPGISG--IA 493
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA GS++ VAL D ++WG N+ GQLG G +R P ++ +
Sbjct: 494 SVAAGSDYSVALR--------YDRTLWAWGENSYGQLGDGTTVNRHVPTRVQGLS----- 540
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ + G+ H +L R W +G +GQLG GTT + P QV+ L
Sbjct: 541 GIVAIATGNGH--MLAVRS------NGTVWAWGDNSSGQLGDGTTINRATPVQVQVLSGI 592
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
V + + H+ V G +W+WG+ L + R + P + G G
Sbjct: 593 VAVAAG---AAHSLAVRYDGTLWAWGINNTSQLGDGTGIPR------LVPTQVQGIG--- 640
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
V V+ H++ V DG LW WG G LG
Sbjct: 641 ----SAVAVSAAKHHSLAVLADG-TLWDWGANNYGQLG 673
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 123/298 (41%), Gaps = 49/298 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S I SV AG S+A+ LW WG L D +T V+ P+ V G
Sbjct: 489 ISGIASVAAGSDYSVALRYDRTLWAWGENSYGQLGDGTT------VNRHVPTRVQGLSG- 541
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +A G+ H++A+ S G ++WG N++GQLG G +R P ++ +
Sbjct: 542 -IVAIATGNGHMLAVRSNG--------TVWAWGDNSSGQLGDGTTINRATPVQVQVLSGI 592
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V G+ H+ + + + W +G+ QLG GT LVP QV+ +
Sbjct: 593 V-----AVAAGAAHSLAVRY--------DGTLWAWGINNTSQLGDGTGIPRLVPTQVQGI 639
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
V+V H+ V + G +W WG L RN+ +P ++
Sbjct: 640 GS---AVAVSAAKHHSLAVLADGTLWDWGANN------YGQLGRNQDNTNPTPSKVTTLT 690
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G F + G H++ + DGY L WG G LGTG + P + L
Sbjct: 691 GVTEAVGTFG----YSIGFGHSLALRSDGY-LVGWGHNTYGQLGTGVPENIPVPVLSL 743
>gi|108761023|ref|YP_629150.1| RCC1 repeat-containing protein [Myxococcus xanthus DK 1622]
gi|108464903|gb|ABF90088.1| RCC1 repeat domain protein [Myxococcus xanthus DK 1622]
Length = 1466
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 127/298 (42%), Gaps = 45/298 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S I V+AG +LA+ G +W WG+ S G + P V V
Sbjct: 258 LSGITEVRAGTYHALALGKDGGVWTWGSNA---SGQLGDGTWNDRAVPMQVPGLE--RVK 312
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA +AL+ G ++WGAN +GQLG GD R P + N
Sbjct: 313 AVASMDSDSLALLDTG--------AVFAWGANGSGQLGDGDTTDRATPGPVPGLN----- 359
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
AV V G+ H +L RK + W +G G +GQLGHG ++ +VP V L
Sbjct: 360 AVASVVGGAQHALVL--RK------DGTLWAWGGGLSGQLGHGGSERHVVPAPVMRL--- 408
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ S+ G FH+ G VW+WG L ++ R+ A + + G G
Sbjct: 409 AGVTSMATGSFHSLAALGDGSVWAWGRNTYGQLGDGSTAERHAA------VRVEGLG--- 459
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTE 298
VA A H++ V DG +W+WGR +G LG G T+D P V P LT
Sbjct: 460 ----GVRSVASAAHHSLAVGMDG-TVWAWGRNAAGQLGDGTTLDRARPVAV--PGLTS 510
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 125/295 (42%), Gaps = 49/295 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ + +V AG SLA+ G +W WG + L T+ G TP V +G
Sbjct: 158 LDSVVAVAAGDFHSLALREDGTVWAWGTNFHGQLGRGHTQPG------LTPEQVPGLNG- 210
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +A G + +A++ ED +WG+N +GQLG G RL P + +
Sbjct: 211 -VVALAAGFDFTLAVL--------EDGTVRAWGSNGSGQLGDGTSTQRLSPVKVSELS-- 259
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ EV G++H L + WT+G +GQLG GT VP QV L
Sbjct: 260 ---GITEVRAGTYHALALGK--------DGGVWTWGSNASGQLGDGTWNDRAVPMQVPGL 308
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ + S+D + + G V++WG + L + D +P G
Sbjct: 309 ERVKAVASMDS---DSLALLDTGAVFAWGANG------SGQLGDGDTTDRATP------G 353
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
P P V GA H +++ DG LW+WG G SG LG G + PA V+
Sbjct: 354 PV-PGLNAVASVVGGAQHALVLRKDG-TLWAWGGGLSGQLGHGGSERHVVPAPVM 406
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 114/295 (38%), Gaps = 51/295 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + S+ G SLA G++W WG L D ST H
Sbjct: 408 LAGVTSMATGSFHSLAALGDGSVWAWGRNTYGQLGDGSTA-----------------ERH 450
Query: 58 TVVKV-ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
V+V G VA + G D ++WG N GQLG G R RP +
Sbjct: 451 AAVRVEGLGGVRSVASAAHHSLAVGMDGTVWAWGRNAAGQLGDGTTLDRARPVAVPGLT- 509
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+V V G H L + W +G GQLG GTT L P +V
Sbjct: 510 ----SVTAVAAGGSHVLALRS--------DGSVWAWGYNALGQLGDGTTVDRLTPVRVSG 557
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L +V+V G + + + S G VW+WG L + R +SP+ + G
Sbjct: 558 LGA---VVAVAAGSYFSMALQSDGTVWTWGEGFEGQLGDGGGVQR------LSPVRVEG- 607
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +VA G+AH + V DG +W+WG G LG G D F P V
Sbjct: 608 ------LANITRVAAGSAHALAVRGDG-TVWAWGDNGEGQLGDGSWADRFRPVQV 655
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 122/292 (41%), Gaps = 44/292 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + ++ AGG S+A+ G++W WG S G +L P+ V H V
Sbjct: 858 LRGVVALAAGGDASVALRADGSVWSWGGNA---SGQLGDGTLTDRALPAHV--EHLSNAV 912
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H +A+ GED ++WGAN +GQLG G L P ++ +
Sbjct: 913 AVAVGETHALAV--------GEDGALWAWGANGSGQLGDGGTAPSLTPVRVKGLER---- 960
Query: 121 AVYEVTCG-SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V V G +F A+ + W +G +GQLG GT + VP QV L
Sbjct: 961 -VASVAAGRAFSVAVRD---------DGTAWAWGTNPSGQLGDGTNHARSVPNQVTSLKG 1010
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ ++ G H +S+ G VW+WG + LG + S + + P +
Sbjct: 1011 ---IRAMSAGAHHVVALSADGTVWTWG-DNTLGQLGDGSSSPT----GMWPRQV------ 1056
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P+ + VA G TV V DG +WG G LG GKT P V
Sbjct: 1057 -PELRGVEAVAAGEQFTVAVLLDGTAR-AWGSNEYGQLGDGKTGPQLTPMAV 1106
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 98/243 (40%), Gaps = 41/243 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+V V G H +AL G D ++WG N++GQLG G R P + +
Sbjct: 111 IVSVVSGDAHSLAL--------GADGSVWTWGGNSSGQLGDGTTTDRATPMRVAGLD--- 159
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+V V G FH+ L + W +G +GQLG G TQ L PEQV P
Sbjct: 160 --SVVAVAAGDFHSLALRE--------DGTVWAWGTNFHGQLGRGHTQPGLTPEQV---P 206
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+V++ G T V G V +WG L S R +SP+ +S
Sbjct: 207 GLNGVVALAAGFDFTLAVLEDGTVRAWGSNGSGQLGDGTSTQR------LSPVKVS---- 256
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTE 298
+ +V G H + + DG +W+WG SG LG G D P V P E
Sbjct: 257 ---ELSGITEVRAGTYHALALGKDG-GVWTWGSNASGQLGDGTWNDRAVPMQV---PGLE 309
Query: 299 EFK 301
K
Sbjct: 310 RVK 312
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 92/224 (41%), Gaps = 42/224 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V VA G +H +AL D ++WGAN GQLG G R+ P ++E
Sbjct: 811 VRSVASGIQHSLALAC--------DGTVWAWGANARGQLGDGTTTPRVTPGLVEGLR--- 859
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + G + L + W++G +GQLG GT +P V+ L
Sbjct: 860 --GVVALAAGGDASVAL--------RADGSVWSWGGNASGQLGDGTLTDRALPAHVEHLS 909
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDA--ISPILISGN 236
V+V G H V G +W+WG N S + G A ++P+ + G
Sbjct: 910 NA---VAVAVGETHALAVGEDGALWAWGA--------NGSGQLGDGGTAPSLTPVRVKG- 957
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ VA G A +V V DDG W+WG SG LG G
Sbjct: 958 ------LERVASVAAGRAFSVAVRDDGTA-WAWGTNPSGQLGDG 994
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 121/318 (38%), Gaps = 63/318 (19%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCP-------------LPDSSTE---------G 38
+ ++ SV AG S+A+ + G W WG P +P+ T G
Sbjct: 958 LERVASVAAGRAFSVAVRDDGTAWAWGTNPSGQLGDGTNHARSVPNQVTSLKGIRAMSAG 1017
Query: 39 GFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVAL-------------VSAGETYKGE--- 82
+V+ VW + +T+ ++ GS + V+AGE +
Sbjct: 1018 AHHVVALSADGTVWTWGDNTLGQLGDGSSSPTGMWPRQVPELRGVEAVAAGEQFTVAVLL 1077
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPN 142
D +WG+N GQLG G +L P ++ V V H +
Sbjct: 1078 DGTARAWGSNEYGQLGDGKTGPQLTPMAVKIEGPKIRPPVRTVRAWGQHAVV-------- 1129
Query: 143 DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV 202
M + T+G GQLG GTT VP V L +V+V G +H+ + S G V
Sbjct: 1130 QMSDGTVQTWGDNTFGQLGDGTTTRRAVPLTVYGLAS---VVAVSSGAWHSLALLSDGTV 1186
Query: 203 WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
W+WG L S R P+ ++G G D V + G H + V D
Sbjct: 1187 WAWGANGFGQLGDGTSTPRTR------PVQVAGLG-------DVVAIGSGGYHALAVCSD 1233
Query: 263 GYKLWSWGRGRSGVLGTG 280
G +W+WG G LG G
Sbjct: 1234 G-SVWTWGYNAFGQLGDG 1250
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 111/291 (38%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ I V AG +LA+ G +W WG+ G S F P V G +
Sbjct: 608 LANITRVAAGSAHALAVRGDGTVWAWGDN---GEGQLGDGSWADRFRPVQVPGLQG--IT 662
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V+ G H +AL D +WG N GQLG G SR+RP +I
Sbjct: 663 AVSGGRSHSMALQG--------DGTVRAWGYNGYGQLGDGTLTSRVRPALIPGLT----- 709
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ + H L + +G GQLG G + VP QV+ + +
Sbjct: 710 GIQALHPSHLHVLAL--------HADGTLRGWGYNRFGQLGLGAAGWSAVPVQVRGIGRV 761
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
L G HT +V + G V +WG E G G + + T P+ +
Sbjct: 762 DRL---SVGRAHTLMVRADGTVMAWG-ENGSGQLGDGTSTHR-----TGPVSV------- 805
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P VA G H++ + DG +W+WG G LG G T P +V
Sbjct: 806 PGVPCVRSVASGIQHSLALACDG-TVWAWGANARGQLGDGTTTPRVTPGLV 855
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 116/293 (39%), Gaps = 41/293 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S +V G +LA+ GALW WG S G S TP V V
Sbjct: 908 LSNAVAVAVGETHALAVGEDGALWAWGAN---GSGQLGDGGTAPSLTPVRVKGL--ERVA 962
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G VA+ +D ++WG N +GQLG G +R P + +
Sbjct: 963 SVAAGRAFSVAVR--------DDGTAWAWGTNPSGQLGDGTNHARSVPNQVTSLK----- 1009
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKELPQ 179
+ ++ G+ H L+ + WT+G GQLG G++ + + P QV EL
Sbjct: 1010 GIRAMSAGAHHVVALS--------ADGTVWTWGDNTLGQLGDGSSSPTGMWPRQVPELRG 1061
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ +V G T V G +WG + L + G ++P+ +
Sbjct: 1062 ---VEAVAAGEQFTVAVLLDGTARAWGSNE------YGQLGDGKTGPQLTPMAVK---IE 1109
Query: 240 GPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
GPK + PV+ V H V+ DG + +WG G LG G T P V
Sbjct: 1110 GPKIRPPVRTVRAWGQHAVVQMSDG-TVQTWGDNTFGQLGDGTTTRRAVPLTV 1161
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 126/301 (41%), Gaps = 55/301 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ + ++ +GG +LA+ + G++W WG L D + E S P+ V G
Sbjct: 1214 LGDVVAIGSGGYHALAVCSDGSVWTWGYNAFGQLGDGTAE------SRSLPTRVEGLEG- 1266
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV VA G + +AL S D +WG N +GQLG G +R ++ +
Sbjct: 1267 -VVAVAGGDHYSLALHS--------DGTLSAWGNNASGQLGDGTGTTRYSRVAVKGVDG- 1316
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT--TQSALVPEQVK 175
V +V G+ HT L + WT+G GQLG G T+ LVP +
Sbjct: 1317 ----VVDVRAGATHTVALRG--------DGTVWTWGDNAFGQLGDGASGTRMRLVP---R 1361
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILI 233
+P + +V G HT V+ G VW+WG LGL N + T P+ +
Sbjct: 1362 PVPNLSSVSAVGAGARHTFAVALKGTVWTWGRNSHGQLGLGDNTNRTE--------PLRV 1413
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
+ D V+ GA ++ + DG L SWG G LG G T +P V
Sbjct: 1414 R-------ELSDVTVVSGGADFSLAMKRDGTVL-SWGSSLYGSLGLGATGHRSSPGQVAL 1465
Query: 294 P 294
P
Sbjct: 1466 P 1466
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 123/334 (36%), Gaps = 79/334 (23%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + +V AGG LA+ + G++W WG L G + V TP V VV
Sbjct: 508 LTSVTAVAAGGSHVLALRSDGSVWAWGYNAL---GQLGDGTTVDRLTPVRVSGL--GAVV 562
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA GS +AL S D ++WG GQLG G RL P +E
Sbjct: 563 AVAAGSYFSMALQS--------DGTVWTWGEGFEGQLGDGGGVQRLSPVRVEGLAN---- 610
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ V GS H L R + W +G GQLG G+ P QV P
Sbjct: 611 -ITRVAAGSAHA--LAVRG------DGTVWAWGDNGEGQLGDGSWADRFRPVQV---PGL 658
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG----- 235
+ +V G H+ + G V +WG G G + +LT + P LI G
Sbjct: 659 QGITAVSGGRSHSMALQGDGTVRAWGY-NGYGQLGDGTLTSR-----VRPALIPGLTGIQ 712
Query: 236 ------------------NGPHGPKFQD-----------PVQV---------ACGAAHTV 257
G +F PVQV + G AHT+
Sbjct: 713 ALHPSHLHVLALHADGTLRGWGYNRFGQLGLGAAGWSAVPVQVRGIGRVDRLSVGRAHTL 772
Query: 258 LVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+V DG + +WG SG LG G + P V
Sbjct: 773 MVRADGTVM-AWGENGSGQLGDGTSTHRTGPVSV 805
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 104/307 (33%), Gaps = 86/307 (28%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+VV V+ G+ H +AL+S D ++WGAN GQLG G R RP +
Sbjct: 1166 SVVAVSSGAWHSLALLS--------DGTVWAWGANGFGQLGDGTSTPRTRPVQVAGLGD- 1216
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + G +H + + WT+G GQLG GT +S +P +V+ L
Sbjct: 1217 ----VVAIGSGGYHALAVCS--------DGSVWTWGYNAFGQLGDGTAESRSLPTRVEGL 1264
Query: 178 PQYVYLVSVD-----------------------------------------------CGL 190
V + D G
Sbjct: 1265 EGVVAVAGGDHYSLALHSDGTLSAWGNNASGQLGDGTGTTRYSRVAVKGVDGVVDVRAGA 1324
Query: 191 FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
HT + G VW+WG L AS TR + P + P V
Sbjct: 1325 THTVALRGDGTVWTWGDNAFGQLGDGASGTRMR----LVPRPV-------PNLSSVSAVG 1373
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGL 310
GA HT V G +W+WGR G LG G + P V E + +GG
Sbjct: 1374 AGARHTFAVALKG-TVWTWGRNSHGQLGLGDNTNRTEPLRV------RELSDVTVVSGGA 1426
Query: 311 DDEIKTK 317
D + K
Sbjct: 1427 DFSLAMK 1433
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 80/209 (38%), Gaps = 30/209 (14%)
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPN 142
D +WG N +GQLG G R P + V V G H+ L
Sbjct: 777 DGTVMAWGENGSGQLGDGTSTHRTGPVSVPGVP-----CVRSVASGIQHSLALA------ 825
Query: 143 DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV 202
+ W +G GQLG GTT + P V+ L V L G + + + G V
Sbjct: 826 --CDGTVWAWGANARGQLGDGTTTPRVTPGLVEGLRGVVALA---AGGDASVALRADGSV 880
Query: 203 WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WSWG G + +LT D P H + V VA G H + V +D
Sbjct: 881 WSWGGNAS-GQLGDGTLT-----DRALPA-------HVEHLSNAVAVAVGETHALAVGED 927
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G LW+WG SG LG G T P V
Sbjct: 928 G-ALWAWGANGSGQLGDGGTAPSLTPVRV 955
>gi|449676621|ref|XP_004208667.1| PREDICTED: uncharacterized protein LOC101237479, partial [Hydra
magnipapillata]
Length = 896
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 119/289 (41%), Gaps = 69/289 (23%)
Query: 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
G VV VACG H +AL G YSWG+N GQLG+GD +R RP +I
Sbjct: 495 QGIQVVSVACGEFHTIALCEEG---------VYSWGSNEYGQLGVGDTRTRYRPVLI--- 542
Query: 115 NQDSPWAVYEVTCGSFHTALLT----------------------HRKRPN--DMLES--- 147
S + V CG++HT +T ++ P D+L+S
Sbjct: 543 THISSKQIVSVVCGAYHTLAITSDYKVYSWGWGVHGQLGLKSVENQLTPKQIDLLDSHKV 602
Query: 148 -----------------MCWTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCG 189
+TFG GQLG G+ ++P+ V L +YL+S CG
Sbjct: 603 IQAAAGYAHSAVLTSQRYVYTFGADLYGQLGIGSHYKQVIPQLVDSLTLDSIYLIS--CG 660
Query: 190 LFHTSVVSSAGDVWSWGME-KGLGLCPNASLTRNEAGDAISPILISGNGPHGP-----KF 243
F T +S ++ WG +C A ++ G ++ N P +
Sbjct: 661 PFETIAISEDQTIFCWGRNYHQFYICAKAESSK--YGRKMASNTKDLNHRFYPETLQFQL 718
Query: 244 QDPV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
Q P+ Q+ CG H +++T ++++WG G LG ID AP +V
Sbjct: 719 QHPITQIFCGNWHYIILTSVN-QVYTWGYNDCGQLGHYNKIDQSAPRLV 766
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 115/293 (39%), Gaps = 53/293 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
QI SV G +LAI + ++ WG + L S E + TP + H V
Sbjct: 549 QIVSVVCGAYHTLAITSDYKVYSWGWGVHGQLGLKSVE------NQLTPKQIDLLDSHKV 602
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++ A G H L S Y ++GA+ GQLG+G ++ P+++++ DS
Sbjct: 603 IQAAAGYAHSAVLTSQRYVY--------TFGADLYGQLGIGSHYKQVIPQLVDSLTLDS- 653
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCW--------TFGLGENGQLGHGTTQSA--- 168
+Y ++CG F T ++ + CW E+ + G +
Sbjct: 654 --IYLISCGPFETIAISEDQTI------FCWGRNYHQFYICAKAESSKYGRKMASNTKDL 705
Query: 169 ---LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
PE ++ Q+ + + CG +H +++S V++WG C L
Sbjct: 706 NHRFYPETLQFQLQHP-ITQIFCGNWHYIILTSVNQVYTWGYND----C--GQLGHYNKI 758
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
D +P L+ + VA GA +V D + +WGR G +G
Sbjct: 759 DQSAPRLVKALIRRA-----IIGVAVGAEFSVAFDADD-NIMAWGRNDEGKIG 805
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 24/156 (15%)
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL-PQYVY 182
+ CG H A +T+ K +T+G G+ Q+ +P +++ L Q +
Sbjct: 449 RIACGRNHIAFVTNNKE--------LYTWGKECGGR--KDNVQNTCLPMRMENLHNQGIQ 498
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+VSV CG FHT + G V+SWG + L + TR P+LI+
Sbjct: 499 VVSVACGEFHTIALCEEG-VYSWGSNEYGQLGVGDTRTRYR------PVLITHISS---- 547
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
+ V V CGA HT+ +T D YK++SWG G G LG
Sbjct: 548 -KQIVSVVCGAYHTLAITSD-YKVYSWGWGVHGQLG 581
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
+ CG H + V++ ++++WG E G ++ + P+ + G +
Sbjct: 450 IACGRNHIAFVTNNKELYTWGKECGG--------RKDNVQNTCLPMRMENLHNQGIQV-- 499
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VACG HT+ + ++G ++SWG G LG G T + P ++
Sbjct: 500 -VSVACGEFHTIALCEEG--VYSWGSNEYGQLGVGDTRTRYRPVLI 542
>gi|440898458|gb|ELR49953.1| RCC1 and BTB domain-containing protein 2, partial [Bos grunniens
mutus]
Length = 544
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 112/236 (47%), Gaps = 34/236 (14%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
K+AC S H+V + GE + +WG N QLG G + L P I T
Sbjct: 92 KIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTTNAGLVPYHIST--N 141
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V EV CGS+H+ +LT E W G +GQ+G G+T + +P +V
Sbjct: 142 LSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGSGSTANQPIPRRVTG 193
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q +V++ CG + V + G+V+ WG N L +G+ +P ++
Sbjct: 194 CLQSKVVVNIACGQMCSMAVVNTGEVFVWGYNG------NGQLGLGSSGNQPTPCRVA-- 245
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G + Q +VACG AHT+++TD+G ++++WG G LGTG + P V+
Sbjct: 246 ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNKSNQSYPTPVV 297
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 110/253 (43%), Gaps = 45/253 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q
Sbjct: 147 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQPIPRRVTGCLQSK 198
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + + E W G NGQLG G++ + P +V L
Sbjct: 199 --VVVNIACGQMCSMAVVNTG------EVFVW--GYNGNGQLGLGSSGNQPTPCRVAAL- 247
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAI-SPILISG 235
Q + + V CG HT V++ G V++WG LG T N++ + +P+++
Sbjct: 248 QGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLG-------TGNKSNQSYPTPVVVE- 299
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFF 286
K + AC +AHT G ++ WG RG+S L T F
Sbjct: 300 ------KDRIIEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVTLPHLTHFSSTDDVFACF 353
Query: 287 APAIVLWPPLTEE 299
A V W L+ E
Sbjct: 354 ATPAVTWRLLSVE 366
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M S+A+ N G +++WG + G L SS TP V G V
Sbjct: 200 VVNIACGQMCSMAVVNTGEVFVWG------YNGNGQLGLGSSGNQPTPCRVAALQGIRVQ 253
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 254 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYP 293
>gi|350593458|ref|XP_003483691.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like, partial [Sus
scrofa]
Length = 969
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 118/254 (46%), Gaps = 38/254 (14%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V ++K+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 678 TLAPQLVQGLASRNIIKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 729
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 730 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 781
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG L
Sbjct: 782 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWGDGD------YGKL 834
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 835 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 886
Query: 278 GTGKTIDFFAPAIV 291
G G P ++
Sbjct: 887 GHGTEEHVRYPKLL 900
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 71/183 (38%), Gaps = 27/183 (14%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + VVKV CGS+
Sbjct: 809 SGDAQTLAVTENGQVWSWGDG---DYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 865
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 866 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 914
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 915 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEP-SALPGLDTKHIVGI 963
Query: 187 DCG 189
CG
Sbjct: 964 ACG 966
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 663 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIIKIAAHSDGHHYLALAATGEVYSWGCGDG- 721
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 722 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 774
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 775 GNYGRLGHGSSEDEAIPMLV 794
>gi|390336982|ref|XP_795107.3| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like
[Strongylocentrotus purpuratus]
Length = 1391
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 38/239 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF---SLVSSFT--PSPVWDFHGH 57
Q V G + S+A+ G L+ WG+ +T G +LV+++T P+ + G
Sbjct: 142 QFVKVCCGSLHSMALTRDGRLFSWGD------NTYGQLGIGTLVTNYTDRPTELTSLRGV 195
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V+VACG H AL +G + WG N+ GQLGLG++E++ P ++
Sbjct: 196 PLVRVACGGFHSFALTISGSVF--------GWGKNDVGQLGLGNKENKAYPTLLRNMRSQ 247
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + CG HTA+LT + + FG G GQLGHG+ + + P +V +L
Sbjct: 248 ---MVKHIACGQDHTAMLT--------ADGGVFLFGQGSEGQLGHGSNYNEVNPRKVIDL 296
Query: 178 PQYVYLVSVDCGLFHTSVVS-SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
+ V CG HT V+ S G ++++G +G+ + L ++EA +P + G
Sbjct: 297 -MGSDITQVTCGKHHTLVLEGSKGRLYAFG--QGI----HGQLGQDEARSCSNPQRVPG 348
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 38/239 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF---SLVSSFT--PSPVWDFHGH 57
Q V G + S+A+ G L+ WG+ +T G +LV+++T P+ + G
Sbjct: 482 QFVKVCCGSLHSMALTRDGRLFSWGD------NTYGQLGIGTLVTNYTDRPTELTSLRGV 535
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V+VACG H AL +G + WG N+ GQLGLG++E++ P ++
Sbjct: 536 PLVRVACGGFHSFALTISGSVF--------GWGKNDVGQLGLGNKENKSYPTLLRNMRSQ 587
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + CG HTA+LT + + FG G GQLGHG+ + + P +V +L
Sbjct: 588 ---MVKHIACGQDHTAMLT--------ADGGVFLFGQGSEGQLGHGSNYNEVNPRKVIDL 636
Query: 178 PQYVYLVSVDCGLFHTSVVS-SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
+ V CG HT V+ S G ++++G +G+ + L ++EA +P + G
Sbjct: 637 -MGSDITQVTCGKHHTLVLEGSKGRLYAFG--QGI----HGQLGQDEARSCSNPQRVPG 688
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 110/246 (44%), Gaps = 50/246 (20%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL--GDRESRLRPKIIETFN 115
+ VACG +H +A+ + + WG N+ GQ GL GD E++ RP+I+
Sbjct: 428 VIKHVACGDDHTLAV--------SDRVQVLGWGRNDRGQCGLATGDIENKPRPRILRHL- 478
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT--TQSALVPEQ 173
+ + +V CGS H+ LT R +++G GQLG GT T P +
Sbjct: 479 --ASYQFVKVCCGSLHSMALTRDGR--------LFSWGDNTYGQLGIGTLVTNYTDRPTE 528
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNAS---LTRNEAGD 226
+ L + V LV V CG FH+ ++ +G V+ WG + GLG N S L RN
Sbjct: 529 LTSL-RGVPLVRVACGGFHSFALTISGSVFGWGKNDVGQLGLGNKENKSYPTLLRNMRSQ 587
Query: 227 AISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFF 286
+ +ACG HT ++T DG ++ +G+G G LG G +
Sbjct: 588 MVK------------------HIACGQDHTAMLTADG-GVFLFGQGSEGQLGHGSNYNEV 628
Query: 287 APAIVL 292
P V+
Sbjct: 629 NPRKVI 634
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 136/322 (42%), Gaps = 72/322 (22%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFTPSPVWDFHGHTVVK 61
++ S+ G + + + G L+M G ++++G + + P V +
Sbjct: 38 RVQSISCGKHHTGIVLDDGTLYMCG------ANSKGQLGQDRNQYKPVQVSALETVVIKH 91
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL--GDRESRLRPKIIETFNQDSP 119
VACG +H +A+ G+ WG N+ GQ GL GD E++ RP+I++ +
Sbjct: 92 VACGDDHTLAVSDRGQVL--------GWGRNDRGQCGLATGDIENKPRPRILKHL---AS 140
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT--TQSALVPEQVKEL 177
+ +V CGS H+ LT R +++G GQLG GT T P ++ L
Sbjct: 141 YQFVKVCCGSLHSMALTRDGR--------LFSWGDNTYGQLGIGTLVTNYTDRPTELTSL 192
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNA---SLTRNEAGDAISP 230
+ V LV V CG FH+ ++ +G V+ WG + GLG N +L RN +
Sbjct: 193 -RGVPLVRVACGGFHSFALTISGSVFGWGKNDVGQLGLGNKENKAYPTLLRNMRSQMVKH 251
Query: 231 I----------------LISGNGP-----HGPKFQ-------------DPVQVACGAAHT 256
I + G G HG + D QV CG HT
Sbjct: 252 IACGQDHTAMLTADGGVFLFGQGSEGQLGHGSNYNEVNPRKVIDLMGSDITQVTCGKHHT 311
Query: 257 VLVTDDGYKLWSWGRGRSGVLG 278
+++ +L+++G+G G LG
Sbjct: 312 LVLEGSKGRLYAFGQGIHGQLG 333
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 89/200 (44%), Gaps = 21/200 (10%)
Query: 84 LVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPND 143
+ + WG++ GQLG+G + ++ + S V ++CG HT ++ +D
Sbjct: 1 MATFCWGSSMEGQLGIGITGGQTTQEVAKEVTTLSGQRVQSISCGKHHTGIVL-----DD 55
Query: 144 MLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVW 203
MC G GQLG Q P QV L + V + V CG HT VS G V
Sbjct: 56 GTLYMC---GANSKGQLGQDRNQYK--PVQVSAL-ETVVIKHVACGDDHTLAVSDRGQVL 109
Query: 204 SWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
WG G C L + + P ++ H +Q V+V CG+ H++ +T DG
Sbjct: 110 GWG-RNDRGQC---GLATGDIENKPRPRILK----HLASYQF-VKVCCGSLHSMALTRDG 160
Query: 264 YKLWSWGRGRSGVLGTGKTI 283
+L+SWG G LG G +
Sbjct: 161 -RLFSWGDNTYGQLGIGTLV 179
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 114/300 (38%), Gaps = 94/300 (31%)
Query: 51 VWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG------------ 98
V G V ++CG H ++ G Y +C GAN+ GQLG
Sbjct: 31 VTTLSGQRVQSISCGKHHTGIVLDDGTLY-----MC---GANSKGQLGQDRNQYKPVQVS 82
Query: 99 ----------------------------------------LGDRESRLRPKIIETFNQDS 118
GD E++ RP+I++ +
Sbjct: 83 ALETVVIKHVACGDDHTLAVSDRGQVLGWGRNDRGQCGLATGDIENKPRPRILKHL---A 139
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT--TQSALVPEQVKE 176
+ +V CGS H+ LT R +++G GQLG GT T P ++
Sbjct: 140 SYQFVKVCCGSLHSMALTRDGR--------LFSWGDNTYGQLGIGTLVTNYTDRPTELTS 191
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPIL 232
L + V LV V CG FH+ ++ +G V+ WG + GLG N+ A +L
Sbjct: 192 L-RGVPLVRVACGGFHSFALTISGSVFGWGKNDVGQLGLG---------NKENKAYPTLL 241
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ Q +ACG HT ++T DG ++ +G+G G LG G + P V+
Sbjct: 242 ------RNMRSQMVKHIACGQDHTAMLTADG-GVFLFGQGSEGQLGHGSNYNEVNPRKVI 294
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 101/280 (36%), Gaps = 31/280 (11%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHTVVKVACGSEHVVALVS 74
D+ L G L +EG S++ P V D G + +V CG H + L
Sbjct: 257 DHTAMLTADGGVFLFGQGSEGQLGHGSNYNEVNPRKVIDLMGSDITQVTCGKHHTLVL-- 314
Query: 75 AGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII---------ETFNQDSPWAVYEV 125
E KG Y++G +GQLG + S P+ + N S V
Sbjct: 315 --EGSKGR---LYAFGQGIHGQLGQDEARSCSNPQRVPGPWVPHSSTEKNSSSKGRVVRC 369
Query: 126 TCGSFHTALLTHRKRPNDM-LESMCWTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYL 183
H T +D+ ++ + QL + V +
Sbjct: 370 IYAGGHHCFSTATNAADDIQIKLLFRDISTRIFFQLTXXXXXXXXXXXXXXXXXLETVVI 429
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
V CG HT VS V WG G C L + + P ++ H +
Sbjct: 430 KHVACGDDHTLAVSDRVQVLGWG-RNDRGQC---GLATGDIENKPRPRILR----HLASY 481
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
Q V+V CG+ H++ +T DG +L+SWG G LG G +
Sbjct: 482 QF-VKVCCGSLHSMALTRDG-RLFSWGDNTYGQLGIGTLV 519
>gi|345788791|ref|XP_542564.3| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 1
[Canis lupus familiaris]
Length = 529
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 113/236 (47%), Gaps = 34/236 (14%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
K+AC S H+V + GE + +WG N QLG G L P I T
Sbjct: 99 KIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTTNHGLVPCHISTNLS 150
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ V EV CGS+H+ +LT + + +G +GQ+G G+T + +P +V
Sbjct: 151 NK--QVTEVACGSYHSLVLTS--------DGEVFAWGYNNSGQVGSGSTANQPIPRRVTG 200
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q +V++ CG + V + G+V+ WG N L +G+ +P I+
Sbjct: 201 CLQNKVVVNIACGQMCSMAVVNTGEVYVWGYNG------NGQLGLGSSGNQPTPCRIA-- 252
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G + Q +VACG AHT+++TD+G ++++WG G LGTG + PA V+
Sbjct: 253 ALQGIRIQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNKSNQSYPAPVV 304
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 108/254 (42%), Gaps = 47/254 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 154 VTEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQPIPRRVTGCLQNK 205
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + + + +G NGQLG G++ + P ++ L
Sbjct: 206 --VVVNIACGQMCSMAVVNTGE--------VYVWGYNGNGQLGLGSSGNQPTPCRIAAL- 254
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILIS 234
Q + + V CG HT V++ G V++WG G G N S +P+++
Sbjct: 255 QGIRIQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYP--------APVVVE 306
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDF 285
K + AC +AHT G ++ WG RG+S VL T
Sbjct: 307 -------KDRIVEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVVLPHLTHFSCTDDVFAC 359
Query: 286 FAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 360 FATPAVSWRLLSVE 373
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M S+A+ N G +++WG + G L SS TP + G +
Sbjct: 207 VVNIACGQMCSMAVVNTGEVYVWG------YNGNGQLGLGSSGNQPTPCRIAALQGIRIQ 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + +D
Sbjct: 261 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPAPV-VVEKDR-- 309
Query: 121 AVYEVTCGSFHTA 133
V C S HT+
Sbjct: 310 IVEIAACHSAHTS 322
>gi|444732065|gb|ELW72388.1| RCC1 and BTB domain-containing protein 2 [Tupaia chinensis]
Length = 527
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 34/236 (14%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
K+AC S HVV + GE + +WG N QLG G L P I T
Sbjct: 75 KIACLSYGSGPHVVLATTEGEVF--------TWGHNAYSQLGNGTTNHGLVPCHIST--N 124
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V EV CGS+H+ +LT E W G +GQ+G G+T + +P +V
Sbjct: 125 LSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGSGSTANQPIPRRVTG 176
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q +V++ CG + V G+V+ WG N L +G+ +P +S
Sbjct: 177 CLQNKVVVNIACGQMCSMAVVDTGEVYVWGYNG------NGQLGLGSSGNQPTPCRVS-- 228
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G + Q +VACG AHT+++TD+G ++++WG G LGTG + P V+
Sbjct: 229 ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNKSNQSYPTPVV 280
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 112/253 (44%), Gaps = 45/253 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 130 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQPIPRRVTGCLQNK 181
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + D E W G NGQLG G++ + P +V L
Sbjct: 182 --VVVNIACGQMCSMAVV------DTGEVYVW--GYNGNGQLGLGSSGNQPTPCRVSAL- 230
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAI-SPILISG 235
Q + + V CG HT V++ G V++WG LG T N++ + +P+++
Sbjct: 231 QGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLG-------TGNKSNQSYPTPVVVE- 282
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFF 286
K + AC +AHT G ++ WG RG+S +L T F
Sbjct: 283 ------KDRIIEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACF 336
Query: 287 APAIVLWPPLTEE 299
A V W L+ E
Sbjct: 337 ATPAVTWRLLSVE 349
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M S+A+ + G +++WG + G L SS TP V G V
Sbjct: 183 VVNIACGQMCSMAVVDTGEVYVWG------YNGNGQLGLGSSGNQPTPCRVSALQGIRVQ 236
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 237 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYP 276
>gi|52345808|ref|NP_001004950.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 2 [Xenopus (Silurana) tropicalis]
gi|49522414|gb|AAH75441.1| MGC89218 protein [Xenopus (Silurana) tropicalis]
Length = 526
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 114/250 (45%), Gaps = 31/250 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S P + G +V ++ GS HVV + S GE Y SWG N QLG G
Sbjct: 60 SILEPRRIDMLSGKRIVSLSYGSGPHVVIVTSDGEVY--------SWGHNAYSQLGNGST 111
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P + T N + A+ V CGS H+ +LT + + +G +GQ+G
Sbjct: 112 NQALSPCQVST-NLINKKAI-SVACGSHHSMVLT--------CDGEVYAWGYNNSGQVGS 161
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q ++ + CG + V G+V++WG N L
Sbjct: 162 GSTANQPIPRKVTSCLQNKTVIGIACGQMSSMAVVDNGEVYAWGYNG------NGQLGLG 215
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+G+ +P I+ G + + QV CG AHT+ +TD+G +++WG G LGTG
Sbjct: 216 SSGNQPTPCRIA--ALQGIRVE---QVVCGYAHTLALTDEGV-MYAWGANSYGQLGTGNK 269
Query: 283 IDFFAPAIVL 292
+ P V+
Sbjct: 270 SNQSYPVQVI 279
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 93/423 (21%), Positives = 162/423 (38%), Gaps = 61/423 (14%)
Query: 15 LAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACGSEHVVALV 73
+ + + G ++ WG+ S G S + +P V + + VACGS H + L
Sbjct: 87 VIVTSDGEVYSWGHNAY---SQLGNGSTNQALSPCQVSTNLINKKAISVACGSHHSMVLT 143
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
GE Y +WG NN+GQ+G G ++ P+ + + Q+ V + CG +
Sbjct: 144 CDGEVY--------AWGYNNSGQVGSGSTANQPIPRKVTSCLQNK--TVIGIACGQMSSM 193
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
+ D E W G NGQLG G++ + P ++ L Q + + V CG HT
Sbjct: 194 AVV------DNGEVYAW--GYNGNGQLGLGSSGNQPTPCRIAAL-QGIRVEQVVCGYAHT 244
Query: 194 SVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV 249
++ G +++WG + G G N S D + I+
Sbjct: 245 LALTDEGVMYAWGANSYGQLGTGNKSNQSYPVQVIVDKERIVEIA--------------- 289
Query: 250 ACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF---------FAPAIVLWPPLTEEF 300
AC ++HT +++ WG+ R + T F F+ ++W L+ E
Sbjct: 290 ACHSSHTSAAKSQSGQVYMWGQCRGQSVITPHLTHFSCTDDVFACFSTPAIMWRLLSVE- 348
Query: 301 KQDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSV-MERYASILHGSIFG 359
D L E ++ + D K + + + + L + E + S+LH +
Sbjct: 349 PDDHLTVA----ESLKREFDNPNTADLKFLVDEKYIYVHKVLLQIRCEHFRSLLHENEEE 404
Query: 360 KPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYR-NMLAGVKDKLMKRR 418
+ P+ F + + D L+ L YR N L + + +K+
Sbjct: 405 IIEMNQFSYPVY---RAFLEYLYTDNISISPEDAIGLLELATIYRENRLKQLCQQTIKQG 461
Query: 419 IQE 421
I E
Sbjct: 462 ICE 464
>gi|168050967|ref|XP_001777928.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670688|gb|EDQ57252.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 364
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 134/287 (46%), Gaps = 43/287 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF---SLVSSFTPSPVWDFHGHTVV 60
+ + G ++A+ GAL WG D + GF ++V P V
Sbjct: 89 VTHIACGFKHTVAVTETGALASWGG----DEYGQLGFDSGNIVDGVQPRIVKGSRDLHFS 144
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VA G H +AL +G+ Y S+G ++G LG G+ + P ++++ W
Sbjct: 145 RVAAGGYHTLALTGSGDVY--------SFGDGSSGALGHGNLDGCSTPSLVKSL-----W 191
Query: 121 A--VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V ++ CG H+A LT ++ +T+G G+ GQLGHG+TQ+ +P VK L
Sbjct: 192 GLGVTQIACGENHSAALT--------VDGKVFTWGRGKYGQLGHGSTQNIKLPVAVKALV 243
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ ++ + CG HT ++S G ++SWG GL E D +SP +
Sbjct: 244 DH-DVIQIACGGDHTLAITSDGRLFSWGH----GLWGQTGHGTKE--DVLSPKQV----- 291
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
H + + VQV+ GA HTV++ D G +++ WG LGT DF
Sbjct: 292 HQLEGRVLVQVSAGARHTVVLLDRG-EVYGWGDCEQRQLGTCDRCDF 337
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 111/246 (45%), Gaps = 34/246 (13%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL--GDRESR 105
P V H V +ACG +H VA+ G SWG + GQLG G+
Sbjct: 78 PIRVAALDTHMVTHIACGFKHTVAVTETGAL--------ASWGGDEYGQLGFDSGNIVDG 129
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
++P+I++ ++D ++ V G +HT LT D+ ++FG G +G LGHG
Sbjct: 130 VQPRIVKG-SRDLHFS--RVAAGGYHTLALT---GSGDV-----YSFGDGSSGALGHGNL 178
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
P VK L + + + CG H++ ++ G V++WG K L
Sbjct: 179 DGCSTPSLVKSLWG-LGVTQIACGENHSAALTVDGKVFTWGRGK------YGQLGHGSTQ 231
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ P+ + H D +Q+ACG HT+ +T DG +L+SWG G G G G D
Sbjct: 232 NIKLPVAVKALVDH-----DVIQIACGGDHTLAITSDG-RLFSWGHGLWGQTGHGTKEDV 285
Query: 286 FAPAIV 291
+P V
Sbjct: 286 LSPKQV 291
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 106/254 (41%), Gaps = 48/254 (18%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
TP+ + G +V +A H L GE Y + G+N+ GQLG+ E ++
Sbjct: 25 TPTSLSTLVGKDIVHIAASDYHTAFLTDEGEVY--------TTGSNDAGQLGVRGMEEQV 76
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG--HGT 164
P + + V + CG HT +T ++G E GQLG G
Sbjct: 77 VPIRVAALDTH---MVTHIACGFKHTVAVTE--------TGALASWGGDEYGQLGFDSGN 125
Query: 165 TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG-------MEKGLGLCPNA 217
+ P VK + ++ V G +HT ++ +GDV+S+G L C
Sbjct: 126 IVDGVQPRIVKG-SRDLHFSRVAAGGYHTLALTGSGDVYSFGDGSSGALGHGNLDGCSTP 184
Query: 218 SLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
SL ++ G ++ Q+ACG H+ +T DG K+++WGRG+ G L
Sbjct: 185 SLVKSLWGLGVT------------------QIACGENHSAALTVDG-KVFTWGRGKYGQL 225
Query: 278 GTGKTIDFFAPAIV 291
G G T + P V
Sbjct: 226 GHGSTQNIKLPVAV 239
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 90/209 (43%), Gaps = 24/209 (11%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y+ G + GQLG+GD P + T + + +HTA LT E
Sbjct: 5 YALGRGDLGQLGIGDYSDHPTPTSLSTLVGKD---IVHIAASDYHTAFLTD--------E 53
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLG + +VP +V L ++ + + CG HT V+ G + SWG
Sbjct: 54 GEVYTTGSNDAGQLGVRGMEEQVVPIRVAALDTHM-VTHIACGFKHTVAVTETGALASWG 112
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
++ D + P ++ G+ + +VA G HT+ +T G +
Sbjct: 113 GDE----YGQLGFDSGNIVDGVQPRIVKGS-----RDLHFSRVAAGGYHTLALTGSG-DV 162
Query: 267 WSWGRGRSGVLGTGKTIDFFAPAIV--LW 293
+S+G G SG LG G P++V LW
Sbjct: 163 YSFGDGSSGALGHGNLDGCSTPSLVKSLW 191
>gi|444516741|gb|ELV11274.1| E3 ubiquitin-protein ligase HERC2 [Tupaia chinensis]
Length = 894
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 118/254 (46%), Gaps = 38/254 (14%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 524 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 575
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 576 VPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLG 627
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG L
Sbjct: 628 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTDNGQVWSWGDGD------YGKL 680
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D V+V CG+ ++ +T DG +++SWG+G + L
Sbjct: 681 GRGGSDGCKTPKLIE-------KLQDLDVVKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 732
Query: 278 GTGKTIDFFAPAIV 291
G G P ++
Sbjct: 733 GHGTEEHVRYPKLL 746
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 80/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ + G +W WG+ D G TP + VVKV CGS+
Sbjct: 655 SGDAQTLAVTDNGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQF 711
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 712 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 760
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 761 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPAA-LPGLDTKHIVGI 809
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 810 ACGPAQSFAWSSCSE-WSIGLR 830
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 509 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 567
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 568 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 620
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 621 GNYGRLGHGSSEDEAIPMLV 640
>gi|296134345|ref|YP_003641592.1| Ig domain-containing protein group 2 domain-containing protein
[Thermincola potens JR]
gi|296032923|gb|ADG83691.1| Ig domain protein group 2 domain protein [Thermincola potens JR]
Length = 4140
Score = 90.9 bits (224), Expect = 1e-15, Method: Composition-based stats.
Identities = 85/289 (29%), Positives = 121/289 (41%), Gaps = 50/289 (17%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSST--EGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+V +G SLA+ G +W WG + D GG L P V G V +A
Sbjct: 2447 AVYSGTGYSLALKPDGTVWAWG---INDQGQLGNGGQDLNPHKNPEQVPGLTG--VTALA 2501
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G HVVAL + G ++WG N++GQLG G SR P + V
Sbjct: 2502 PGGYHVVALKNDG--------TVWTWGKNDSGQLGDGTYTSRFSPGQVPGLT-----GVK 2548
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
V G+ HT +L + W +G GQLG + A V ++P +
Sbjct: 2549 AVAAGANHTVVLK--------TDGTVWAWGNNMYGQLGTSPSVLAKTYSPV-QIPGIDSV 2599
Query: 184 VSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAI--SPILISGNGPH 239
V + G++HT + G VW+WG +E +G N + A+ SP +SG
Sbjct: 2600 VEIGAGIWHTLARRADGTVWAWGRNIEGQVG---------NGSASAVVDSPAQVSG---- 2646
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+VA G H + + DG +W+WGR G LGTG T+ P
Sbjct: 2647 ---LTGVTKVAAGGYHNLALRSDG-TVWAWGRNDKGQLGTGNTVSSNVP 2691
Score = 68.6 bits (166), Expect = 6e-09, Method: Composition-based stats.
Identities = 62/208 (29%), Positives = 90/208 (43%), Gaps = 30/208 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ GG +A+ N G +W WG DS G + S F+P V G V
Sbjct: 2494 LTGVTALAPGGYHVVALKNDGTVWTWGK---NDSGQLGDGTYTSRFSPGQVPGLTG--VK 2548
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+ H V L + G ++WG N GQLG ++ DS
Sbjct: 2549 AVAAGANHTVVLKTDG--------TVWAWGNNMYGQLGTSPSVLAKTYSPVQIPGIDS-- 2598
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALV--PEQVKELP 178
V E+ G +HT L R + W +G GQ+G+G+ SA+V P QV L
Sbjct: 2599 -VVEIGAGIWHT--LARRA------DGTVWAWGRNIEGQVGNGSA-SAVVDSPAQVSGLT 2648
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ V G +H + S G VW+WG
Sbjct: 2649 G---VTKVAAGGYHNLALRSDGTVWAWG 2673
Score = 51.2 bits (121), Expect = 0.001, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 25/176 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + +V AG ++ + G +W WGN T V + T SPV +VV
Sbjct: 2544 LTGVKAVAAGANHTVVLKTDGTVWAWGNNMYGQLGTSPS---VLAKTYSPVQIPGIDSVV 2600
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++ G H +A + D ++WG N GQ+G G + ++++ Q S
Sbjct: 2601 EIGAGIWHTLA--------RRADGTVWAWGRNIEGQVGNGSASA-----VVDSPAQVSGL 2647
Query: 121 -AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V +V G +H L + W +G + GQLG G T S+ VP Q +
Sbjct: 2648 TGVTKVAAGGYHNLALRS--------DGTVWAWGRNDKGQLGTGNTVSSNVPVQTR 2695
Score = 42.0 bits (97), Expect = 0.57, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 14/113 (12%)
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
+V G ++ + G VW+WG+ N G ++P N P
Sbjct: 2447 AVYSGTGYSLALKPDGTVWAWGI--------NDQGQLGNGGQDLNP---HKNPEQVPGLT 2495
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
+A G H V + +DG +W+WG+ SG LG G F+P V P LT
Sbjct: 2496 GVTALAPGGYHVVALKNDG-TVWTWGKNDSGQLGDGTYTSRFSPGQV--PGLT 2545
Score = 42.0 bits (97), Expect = 0.62, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 25/134 (18%)
Query: 40 FSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL 99
F+ V+ P P + +A G++H +A+ +G D WGAN++GQLG
Sbjct: 1938 FTTVAENAPPPPF-------TDIAAGTDHSMAV-------RG-DSALVGWGANDDGQLGD 1982
Query: 100 GDRESRLRPKIIETFNQDSPW--AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN 157
G + ++ +PW + ++ GS HTA+L + W++G
Sbjct: 1983 GHFGEPVPYPVLVRNADGTPWNPVLSGMSPGSTHTAVLGS--------DGSVWSWGNNAF 2034
Query: 158 GQLGHGTTQSALVP 171
GQLG+G+ +A P
Sbjct: 2035 GQLGNGSYATAGPP 2048
>gi|301756863|ref|XP_002914279.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like
[Ailuropoda melanoleuca]
Length = 4861
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ V+ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVVEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V ++ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4094 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4150
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4151 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4199
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4200 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4251
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4252 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 4300
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P +V
Sbjct: 4301 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4337
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P +V
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVV 608
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4241 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 4294
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4295 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4344
Query: 121 AVYEVTCGSFHTALLTHRKRP 141
V +++ G H+A T P
Sbjct: 4345 -VRQISAGRCHSAAWTAPPVP 4364
>gi|297296624|ref|XP_002804832.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Macaca
mulatta]
Length = 4824
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 119/454 (26%), Positives = 185/454 (40%), Gaps = 91/454 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLP-----DSSTEGGFSLVSSFTPSPVWDFH 55
+ ++ S K +LA G ++ WG+ +SST+ L+
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQG-------PLQ 509
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G VV V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 510 GKVVVCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDIS 561
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++
Sbjct: 562 N-----VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIE 609
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q +++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 610 AL-QGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEE 661
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
V V+ G +H + ++ D ++++WG G G G + P
Sbjct: 662 LAA-----TRIVDVSIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------P 705
Query: 296 LTEEFKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLL 339
+T+ K GLD I + + A RD ++ + +EE
Sbjct: 706 ITKPKK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFS 759
Query: 340 QSKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DR 393
+ S +ERY ++ I PF P S + F + K N L A
Sbjct: 760 HLR-SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVAT 812
Query: 394 SKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
S L R RN+L + D + IQE+V E L
Sbjct: 813 SILGRQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4057 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4113
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4114 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4162
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P+++ L + + V CG +
Sbjct: 4163 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCG-IGIKKVACGTQFS 4214
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4215 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GMIIED---VAVGA 4263
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + +G +++WG G LG G T P +V
Sbjct: 4264 EHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4300
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4204 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGMIIE 4257
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4258 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTGLQGKN-- 4307
Query: 121 AVYEVTCGSFHTALLT 136
V +++ G H+A T
Sbjct: 4308 -VRQISAGRCHSAAWT 4322
>gi|428171675|gb|EKX40590.1| hypothetical protein GUITHDRAFT_75473, partial [Guillardia theta
CCMP2712]
Length = 413
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 113/235 (48%), Gaps = 34/235 (14%)
Query: 59 VVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
VV+V+C G+EHV+ + SAG+ Y S G NN+GQLGLG + ++E+
Sbjct: 136 VVQVSCFNGAEHVLVVTSAGQVY--------SCGCNNHGQLGLGSTKMSPSLLLVESLKH 187
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V +C H+ +++ + ++FGL + GQLG GT + L+P +V E
Sbjct: 188 ---VRVLSASCSYHHSVVVSS--------DGSAFSFGLNDCGQLGIGTRPNQLLPHRV-E 235
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
LP + CG +HT ++ G V+S G K L N L P LI+
Sbjct: 236 LPSPHLVRLAACGQYHTIFLTEEGMVFSCG--KNL----NGQLGLGSRSSTNVPTLIA-- 287
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + +ACG +HT +V +DG KL+++G G LG G T +P V
Sbjct: 288 ---ALQERPASMIACGYSHTCVVLEDG-KLFTFGYNHQGQLGLGHTDSVSSPMQV 338
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 113/243 (46%), Gaps = 38/243 (15%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+ +C H V + S G + S+G N+ GQLG+G R ++L P +E S
Sbjct: 190 VLSASCSYHHSVVVSSDGSAF--------SFGLNDCGQLGIGTRPNQLLPHRVEL---PS 238
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P V CG +HT LT E M ++ G NGQLG G+ S VP + L
Sbjct: 239 PHLVRLAACGQYHTIFLTE--------EGMVFSCGKNLNGQLGLGSRSSTNVPTLIAALQ 290
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGM--EKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + + CG HT VV G ++++G + LGL S++ + + + +
Sbjct: 291 ERPASM-IACGYSHTCVVLEDGKLFTFGYNHQGQLGLGHTDSVSSPMQVETLRNVKV--- 346
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPL 296
V+++CG T ++++ G +LWS+G G LG G + D P VL P +
Sbjct: 347 ----------VKISCGTHFTCVLSESG-ELWSFGCNCHGQLGLGDSTDRLVP--VLVPSM 393
Query: 297 TEE 299
T++
Sbjct: 394 TKK 396
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 101/213 (47%), Gaps = 37/213 (17%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
PSP H V ACG H + L G + +S G N NGQLGLG R S
Sbjct: 237 PSP------HLVRLAACGQYHTIFLTEEG--------MVFSCGKNLNGQLGLGSRSSTNV 282
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
P +I Q+ P ++ + CG HT ++ + + +TFG GQLG G T S
Sbjct: 283 PTLIAAL-QERPASM--IACGYSHTCVV--------LEDGKLFTFGYNHQGQLGLGHTDS 331
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDA 227
P QV+ L + V +V + CG T V+S +G++WS+G + L ++ D
Sbjct: 332 VSSPMQVETL-RNVKVVKISCGTHFTCVLSESGELWSFGCN------CHGQLGLGDSTDR 384
Query: 228 ISPILISGNGPHGPKFQDPVQVACGAAHTVLVT 260
+ P+L+ P K ++ ++ACG H V ++
Sbjct: 385 LVPVLV----PSMTK-KNLSEIACGFHHLVAIS 412
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 106/251 (42%), Gaps = 57/251 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQL------GLGDRESRLRPKIIE 112
+VKVA GSE L G+ Y G N+ GQL G +R I
Sbjct: 75 IVKVAAGSETSYFLTEEGKV--------YCCGLNSTGQLARETHQGSANRSKEYSSDIEL 126
Query: 113 TFNQDSPWAVYEVTC--GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ---S 167
V +V+C G+ H ++T + ++ G +GQLG G+T+ S
Sbjct: 127 MEGLPPDCKVVQVSCFNGAEHVLVVTSAGQV--------YSCGCNNHGQLGLGSTKMSPS 178
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNE 223
L+ E +K +V ++S C H+ VVSS G +S+G+ + G+G PN L
Sbjct: 179 LLLVESLK----HVRVLSASCSYHHSVVVSSDGSAFSFGLNDCGQLGIGTRPNQLL---- 230
Query: 224 AGDAISPILISGNGPHGPKFQDPVQV---ACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
PH + P V ACG HT+ +T++G ++S G+ +G LG G
Sbjct: 231 --------------PHRVELPSPHLVRLAACGQYHTIFLTEEGM-VFSCGKNLNGQLGLG 275
Query: 281 KTIDFFAPAIV 291
P ++
Sbjct: 276 SRSSTNVPTLI 286
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
+P V VVK++CG+ L +GE + S+G N +GQLGLGD RL
Sbjct: 334 SPMQVETLRNVKVVKISCGTHFTCVLSESGELW--------SFGCNCHGQLGLGDSTDRL 385
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLT 136
P ++ + + + + E+ CG H ++
Sbjct: 386 VPVLVPSMTKKN---LSEIACGFHHLVAIS 412
>gi|426236323|ref|XP_004012119.1| PREDICTED: RCC1 and BTB domain-containing protein 2 [Ovis aries]
Length = 527
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 112/236 (47%), Gaps = 34/236 (14%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
K+AC S H+V + GE + +WG N QLG G + L P I T
Sbjct: 75 KIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTTNAGLVPYHIST--N 124
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V EV CGS+H+ +LT E W G +GQ+G G+T + +P +V
Sbjct: 125 LSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGSGSTANQPIPRRVTG 176
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q +V++ CG + V + G+V+ WG N L +G+ +P ++
Sbjct: 177 CLQNKVVVNIACGQMCSMAVVNTGEVFVWGYNG------NGQLGLGSSGNQPTPCRVA-- 228
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G + Q +VACG AHT+++TD+G ++++WG G LGTG + P V+
Sbjct: 229 ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNKSNQSYPTPVV 280
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 111/253 (43%), Gaps = 45/253 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 130 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQPIPRRVTGCLQNK 181
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + + E W G NGQLG G++ + P +V L
Sbjct: 182 --VVVNIACGQMCSMAVVNTG------EVFVW--GYNGNGQLGLGSSGNQPTPCRVAAL- 230
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAI-SPILISG 235
Q + + V CG HT V++ G V++WG LG T N++ + +P+++
Sbjct: 231 QGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLG-------TGNKSNQSYPTPVVVE- 282
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFF 286
K + AC +AHT G ++ WG RG+S L T F
Sbjct: 283 ------KDRIIEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVTLPHLTHFSSTDDVFACF 336
Query: 287 APAIVLWPPLTEE 299
A V W L+ E
Sbjct: 337 ATPAVTWRLLSVE 349
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M S+A+ N G +++WG + G L SS TP V G V
Sbjct: 183 VVNIACGQMCSMAVVNTGEVFVWG------YNGNGQLGLGSSGNQPTPCRVAALQGIRVQ 236
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 237 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYP 276
>gi|300794901|ref|NP_001179920.1| RCC1 and BTB domain-containing protein 2 [Bos taurus]
gi|296481887|tpg|DAA24002.1| TPA: regulator of chromosome condensation (RCC1) and BTB (POZ)
domain containing protein 2 [Bos taurus]
Length = 527
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 112/236 (47%), Gaps = 34/236 (14%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
K+AC S H+V + GE + +WG N QLG G + L P I T
Sbjct: 75 KIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTTNAGLVPYHIST--N 124
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V EV CGS+H+ +LT E W G +GQ+G G+T + +P +V
Sbjct: 125 LSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGSGSTANQPIPRRVTG 176
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q +V++ CG + V + G+V+ WG N L +G+ +P ++
Sbjct: 177 CLQSKVVVNIACGQMCSMAVVNTGEVFVWGYNG------NGQLGLGSSGNQPTPCRVA-- 228
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G + Q +VACG AHT+++TD+G ++++WG G LGTG + P V+
Sbjct: 229 ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNKSNQSYPTPVV 280
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 110/253 (43%), Gaps = 45/253 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q
Sbjct: 130 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQPIPRRVTGCLQSK 181
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + + E W G NGQLG G++ + P +V L
Sbjct: 182 --VVVNIACGQMCSMAVVNTG------EVFVW--GYNGNGQLGLGSSGNQPTPCRVAAL- 230
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAI-SPILISG 235
Q + + V CG HT V++ G V++WG LG T N++ + +P+++
Sbjct: 231 QGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLG-------TGNKSNQSYPTPVVVE- 282
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFF 286
K + AC +AHT G ++ WG RG+S L T F
Sbjct: 283 ------KDRIIEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVTLPHLTHFSSTDDVFACF 336
Query: 287 APAIVLWPPLTEE 299
A V W L+ E
Sbjct: 337 ATPAVTWRLLSVE 349
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M S+A+ N G +++WG + G L SS TP V G V
Sbjct: 183 VVNIACGQMCSMAVVNTGEVFVWG------YNGNGQLGLGSSGNQPTPCRVAALQGIRVQ 236
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 237 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYP 276
>gi|344281808|ref|XP_003412669.1| PREDICTED: RCC1 and BTB domain-containing protein 2 [Loxodonta
africana]
Length = 551
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 106/226 (46%), Gaps = 36/226 (15%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
K+AC S H+V + GE + +WG N QLG G L P I T
Sbjct: 99 KIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTTNHGLVPCYIST--N 148
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V EV CGS+H+ +LT E W G +GQ+G G+T + +P +V
Sbjct: 149 LSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGSGSTANQPIPRRVTG 200
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG- 235
Q +V++ CG + V AG+V+ WG N L +G+ +P ++
Sbjct: 201 CLQNKAVVNIACGQMCSMAVVDAGEVYVWGYNG------NGQLGLGSSGNQPTPCRVAAL 254
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
G H + VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 255 QGIHVQR------VACGYAHTLVLTDEG-QVYAWGANSYGQLGTGN 293
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 125/300 (41%), Gaps = 65/300 (21%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G LV + + + V++VACGS H + L S GE
Sbjct: 118 GEVFTWGHNAYSQLGNGTTNHG--LVPCYIST---NLSNKQVIEVACGSYHSLVLTSDGE 172
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
+ +WG NN+GQ+G G ++ P+ + Q+ AV + CG + +
Sbjct: 173 VF--------AWGYNNSGQVGSGSTANQPIPRRVTGCLQNK--AVVNIACGQMCSMAVV- 221
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G++ + P +V L Q +++ V CG HT V++
Sbjct: 222 -----DAGEVYVW--GYNGNGQLGLGSSGNQPTPCRVAAL-QGIHVQRVACGYAHTLVLT 273
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV-------- 249
G V++WG N G L +GN + + P+ V
Sbjct: 274 DEGQVYAWGA--------------NSYGQ-----LGTGNKSN-QSYPTPISVEKDRIIEI 313
Query: 250 -ACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEE 299
AC + HT G ++ WG RG+S L T FA V W L+ E
Sbjct: 314 AACHSTHTSAAKTQGGNVYMWGQCRGQSVTLPHLTRFSCTDDVFACFATPAVTWRLLSVE 373
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M S+A+ +AG +++WG + G L SS TP V G V
Sbjct: 207 VVNIACGQMCSMAVVDAGEVYVWG------YNGNGQLGLGSSGNQPTPCRVAALQGIHVQ 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P I +
Sbjct: 261 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPISV---EKDR 309
Query: 121 AVYEVTCGSFHTA 133
+ C S HT+
Sbjct: 310 IIEIAACHSTHTS 322
>gi|281347310|gb|EFB22894.1| hypothetical protein PANDA_002155 [Ailuropoda melanoleuca]
Length = 4871
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ V+ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVVEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V ++ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4103 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4159
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4160 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4208
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4209 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4260
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4261 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 4309
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P +V
Sbjct: 4310 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4346
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P +V
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVV 608
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4250 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 4303
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4304 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4353
Query: 121 AVYEVTCGSFHTALLTHRKRP 141
V +++ G H+A T P
Sbjct: 4354 -VRQISAGRCHSAAWTAPPVP 4373
>gi|390333856|ref|XP_788386.3| PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like
[Strongylocentrotus purpuratus]
Length = 782
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 111/234 (47%), Gaps = 35/234 (14%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
PS V VVK+ACG H +AL +D +S+GA GQLG+GD +
Sbjct: 73 PSSVKGLKHAGVVKIACGRVHTIALT--------KDRHLHSFGAGGEGQLGVGDSKQYEA 124
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
P++IE + ++CG+ H+A LT + +G G GQLGHG
Sbjct: 125 PRMIEELEEQD---YLLLSCGTDHSAALT--------ASGTLYMWGGGSEGQLGHGEDTE 173
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDA 227
+P +EL V + V CG +HT++++ ++++G +G L G
Sbjct: 174 VQIP---RELSMGVPVRMVSCGYYHTALLTEDKKLYTFGEGEGG----KLGLGEAHLGGV 226
Query: 228 ISPILISGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
P +S F +PV V+CG AHT +T+ G+ ++++G G SG LG G
Sbjct: 227 NEPQHVSF-------FTEPVDSVSCGNAHTAAITEKGH-VYTFGNGASGQLGHG 272
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 28/189 (14%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
E+ Y +GAN+ GQLGLG R+S +P ++ V ++ CG HT LT +
Sbjct: 47 ENGRLYVFGANDWGQLGLGHRKSVNKPSSVKGLKH---AGVVKIACGRVHTIALTKDRH- 102
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+FG G GQLG G ++ P ++EL + YL+ + CG H++ ++++G
Sbjct: 103 -------LHSFGAGGEGQLGVGDSKQYEAPRMIEELEEQDYLL-LSCGTDHSAALTASGT 154
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ-VACGAAHTVLVT 260
++ WG L E + P +S PV+ V+CG HT L+T
Sbjct: 155 LYMWGGGS------EGQLGHGEDTEVQIPRELS--------MGVPVRMVSCGYYHTALLT 200
Query: 261 DDGYKLWSW 269
+D KL+++
Sbjct: 201 ED-KKLYTF 208
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 60/191 (31%)
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
++CG++H AL ++G Y WG + GQLG G+ P+ +
Sbjct: 139 LSCGTDHSAALTASG--------TLYMWGGGSEGQLGHGEDTEVQIPRELSMG-----VP 185
Query: 122 VYEVTCGSFHTALLTHRKR---------------------------------PNDML--- 145
V V+CG +HTALLT K+ P D +
Sbjct: 186 VRMVSCGYYHTALLTEDKKLYTFGEGEGGKLGLGEAHLGGVNEPQHVSFFTEPVDSVSCG 245
Query: 146 ---------ESMCWTFGLGENGQLGHGTTQ-SALVPEQVKELPQYVYLVSVDCGLFHTSV 195
+ +TFG G +GQLGHG +P++V L ++ V CG HT++
Sbjct: 246 NAHTAAITEKGHVYTFGNGASGQLGHGPDHLETNIPKRVARL-EWTRCKWVSCGDCHTAI 304
Query: 196 VSSAGDVWSWG 206
V++ G ++++G
Sbjct: 305 VTAKGCLYTFG 315
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V++ACG HT+ +T D + L S+G G G LG G + + AP ++
Sbjct: 85 VKIACGRVHTIALTKDRH-LHSFGAGGEGQLGVGDSKQYEAPRMI 128
>gi|356568831|ref|XP_003552611.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like
[Glycine max]
Length = 474
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 133/289 (46%), Gaps = 57/289 (19%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD-FHGHTVVK-VACGSEHVVALVSAGETYK 80
LW+WG +G S P W F +T+++ V+CG+ HVVAL
Sbjct: 142 LWVWGQ-------NQG------SNLPRLFWGAFKPNTIIREVSCGAVHVVAL-------- 180
Query: 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKII----ETFNQDSPWAV--YEVTCGSFHTAL 134
E+ + +WG N GQLG G L+ I F ++P V +V+CG +HTA+
Sbjct: 181 SEEGLLQAWGYNEYGQLGRGVTCEGLQGACIISSYAKFLDEAPELVKIAKVSCGEYHTAV 240
Query: 135 LTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA---LVPEQVKELPQYVYLVSVDCGLF 191
++ + +T+GLG GQLGH + Q L+P +V L +++ V CG
Sbjct: 241 ISDKGE--------VYTWGLGNMGQLGHSSLQYGDKELLPRRVVTLDG-IFIKDVACGGV 291
Query: 192 HTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAIS-----PILISGNGPHGPKFQ 244
HT V+ G +++WG + LGL P L A D+ + P+L+ P G +
Sbjct: 292 HTCSVTQGGALYAWGGGRSGQLGLGPQTGLFSCVANDSQTFFRNIPVLVV---PKGVQL- 347
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
VACG +HT++ DG ++ WG G K + P+ + W
Sbjct: 348 ----VACGYSHTLISMSDG-RIHGWGYNNYGQAANEKCTYAWYPSPIDW 391
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 119/286 (41%), Gaps = 83/286 (29%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF----- 114
+ VACG EH A+ S G + +WGAN+ GQLG G E R P+ ++
Sbjct: 63 LDVACGREHTAAIASDGSLF--------TWGANDFGQLGDGTEERRKLPEKVKQLESEFV 114
Query: 115 ---------------------------------NQDSP-----WAVY-------EVTCGS 129
NQ S W + EV+CG+
Sbjct: 115 KSVSCGAHCSACIAEPHENDGTISTRRLWVWGQNQGSNLPRLFWGAFKPNTIIREVSCGA 174
Query: 130 FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL--------VPEQVKELPQYV 181
H L+ E + +G E GQLG G T L + + E P+ V
Sbjct: 175 VHVVALSE--------EGLLQAWGYNEYGQLGRGVTCEGLQGACIISSYAKFLDEAPELV 226
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG +HT+V+S G+V++WG+ +G ++SL + + + +++ +G
Sbjct: 227 KIAKVSCGEYHTAVISDKGEVYTWGLGN-MGQLGHSSLQYGDK-ELLPRRVVTLDGIF-- 282
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
+D VACG HT VT G L++WG GRSG LG G F+
Sbjct: 283 -IKD---VACGGVHTCSVTQGG-ALYAWGGGRSGQLGLGPQTGLFS 323
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 102/222 (45%), Gaps = 47/222 (21%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKII--ETF----NQDSPWAVYEVTCGSFHTALLTHRK 139
Y WG N +GQ G +E +LR PK + E F ++ W +V CG HTA +
Sbjct: 22 YVWGYNQSGQTGRKGKEDQLRIPKQLPPELFGCPAGTNARW--LDVACGREHTAAIAS-- 77
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS-- 197
+ +T+G + GQLG GT + +PE+VK+L + ++ SV CG ++ ++
Sbjct: 78 ------DGSLFTWGANDFGQLGDGTEERRKLPEKVKQL-ESEFVKSVSCGAHCSACIAEP 130
Query: 198 -------SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
S +W WG +G ++L R G A P I +V+
Sbjct: 131 HENDGTISTRRLWVWGQNQG------SNLPRLFWG-AFKPNTII------------REVS 171
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
CGA H V ++++G L +WG G LG G T + A ++
Sbjct: 172 CGAVHVVALSEEGL-LQAWGYNEYGQLGRGVTCEGLQGACII 212
>gi|66826123|ref|XP_646416.1| regulator of chromosome condensation domain-containing protein
[Dictyostelium discoideum AX4]
gi|60474380|gb|EAL72317.1| regulator of chromosome condensation domain-containing protein
[Dictyostelium discoideum AX4]
Length = 2044
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 119/278 (42%), Gaps = 41/278 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + SV G A+ G L WG + ++ G + P + +
Sbjct: 803 LSDVVSVSIGFCHGAAVRANGELLTWG---VGENGQLGHGDTNNQIEPKIIQSLTSFWIT 859
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+V CG +H + L G+ YSWGA+ GQLGLGD P + + +
Sbjct: 860 QVQCGEKHTICLTKNGK--------VYSWGASEYGQLGLGDVTQHSSPMQVSALEK---Y 908
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++ GS H A+LT K FG G G +P V L +Y
Sbjct: 909 NVLQIASGSTHCAVLTTSKE--------VLVFGNGA----AMGAASVVSLPTLVPSL-KY 955
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+++ + CG + T+ ++ GDV++WG + LG N++ T SP LI
Sbjct: 956 LHIDRLCCGHYSTAAITECGDVYTWGTGQELGHGGNSTET--------SPKLI-----EA 1002
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
+ Q Q++CG HT +TD G ++++ G+ G LG
Sbjct: 1003 LRNQSIRQISCGGRHTAFLTDSG-RIFTCGKDSFGQLG 1039
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 56/261 (21%)
Query: 14 SLAIDNAGALWMWG---NCPLPDSSTEGGFSLV----SSFTPSPVWDFHGHTVVKVACGS 66
++ +D + L WG NC L GF + S TP + +F+ + ++ GS
Sbjct: 706 AIHLDTSRGLMTWGSASNCKL-------GFKVTAKDQSQPTPERLPNFNIPDICSISSGS 758
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQ---LGLGDRESRLRPKIIETFNQDSPWAVY 123
+ L G+ Y + GA LG+ E +L P +E+ + V
Sbjct: 759 YYSSVLTENGDVY------LWGRGAVKTPAVPILGIPQIEDQLLPFKLESLSD-----VV 807
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
V+ G H A + R N L T+G+GENGQLGHG T + + P+ ++ L + ++
Sbjct: 808 SVSIGFCHGAAV----RANGEL----LTWGVGENGQLGHGDTNNQIEPKIIQSLTSF-WI 858
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGNGPH 239
V CG HT ++ G V+SWG + GLG + SP+ +S +
Sbjct: 859 TQVQCGEKHTICLTKNGKVYSWGASEYGQLGLG----------DVTQHSSPMQVSALEKY 908
Query: 240 GPKFQDPVQVACGAAHTVLVT 260
+ +Q+A G+ H ++T
Sbjct: 909 -----NVLQIASGSTHCAVLT 924
>gi|89273844|emb|CAJ81935.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 2 [Xenopus (Silurana) tropicalis]
Length = 526
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 114/250 (45%), Gaps = 31/250 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S P + G +V ++ GS HVV + S GE Y SWG N QLG G
Sbjct: 60 SIIEPRRIDMLSGKRIVSLSYGSGPHVVIVTSDGEVY--------SWGHNAYSQLGNGST 111
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P + T N + A+ V CGS H+ +LT + + +G +GQ+G
Sbjct: 112 NQALSPCQVST-NLINKKAI-SVACGSHHSMVLT--------CDGEVYAWGYNNSGQVGS 161
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q ++ + CG + V G+V++WG N L
Sbjct: 162 GSTANQPIPRKVTSCLQNKTVIGIACGQMSSMAVVDNGEVYAWGYNG------NGQLGLG 215
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+G+ +P I+ G + + QV CG AHT+ +TD+G +++WG G LGTG
Sbjct: 216 SSGNQPTPCRIA--ALQGIRVE---QVVCGYAHTLALTDEGV-MYAWGANSYGQLGTGNK 269
Query: 283 IDFFAPAIVL 292
+ P V+
Sbjct: 270 SNQSYPVQVI 279
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 93/423 (21%), Positives = 162/423 (38%), Gaps = 61/423 (14%)
Query: 15 LAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACGSEHVVALV 73
+ + + G ++ WG+ S G S + +P V + + VACGS H + L
Sbjct: 87 VIVTSDGEVYSWGHNAY---SQLGNGSTNQALSPCQVSTNLINKKAISVACGSHHSMVLT 143
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
GE Y +WG NN+GQ+G G ++ P+ + + Q+ V + CG +
Sbjct: 144 CDGEVY--------AWGYNNSGQVGSGSTANQPIPRKVTSCLQNK--TVIGIACGQMSSM 193
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
+ D E W G NGQLG G++ + P ++ L Q + + V CG HT
Sbjct: 194 AVV------DNGEVYAW--GYNGNGQLGLGSSGNQPTPCRIAAL-QGIRVEQVVCGYAHT 244
Query: 194 SVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV 249
++ G +++WG + G G N S D + I+
Sbjct: 245 LALTDEGVMYAWGANSYGQLGTGNKSNQSYPVQVIVDKERIVEIA--------------- 289
Query: 250 ACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF---------FAPAIVLWPPLTEEF 300
AC ++HT +++ WG+ R + T F F+ ++W L+ E
Sbjct: 290 ACHSSHTSAAKSQSGQVYMWGQCRGQSVITPHLTHFSCTDDVFACFSTPAIMWRLLSVE- 348
Query: 301 KQDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSV-MERYASILHGSIFG 359
D L E ++ + D K + + + + L + E + S+LH +
Sbjct: 349 PDDHLTVA----ESLKREFDNPNTADLKFLVDEKYIYVHKVLLQIRCEHFRSLLHENEEE 404
Query: 360 KPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYR-NMLAGVKDKLMKRR 418
+ P+ F + + D L+ L YR N L + + +K+
Sbjct: 405 IIEMNQFSYPVY---RAFLEYLYTDNISISPEDAIGLLELATIYRENRLKQLCQQTIKQG 461
Query: 419 IQE 421
I E
Sbjct: 462 ICE 464
>gi|386813626|ref|ZP_10100850.1| conserved hypothetical protein [planctomycete KSU-1]
gi|386403123|dbj|GAB63731.1| conserved hypothetical protein [planctomycete KSU-1]
Length = 407
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 129/294 (43%), Gaps = 49/294 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNC---PLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ I ++ + G+ +LA+ + G +W WG L D +T + +PV +
Sbjct: 157 LKNITAIASKGLHNLALKSDGTVWTWGRNIYGQLGDGTT--------TDRNTPVQTRSLN 208
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
T++ +A G H +A + D ++WG N GQLG G +R P ++
Sbjct: 209 TIISIAGGGYHSLA--------QKADGTIWTWGLNQYGQLGDGTITNRTIPVLVNGIKD- 259
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + CG H+ +L + W +G ++GQLG +T + P + +L
Sbjct: 260 ----VSMIRCGGDHSIVLKN--------NGTIWIWGFNQHGQLGDRSTDNRSTPVPMGDL 307
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++D G H+ ++ S G VW+WG + L +++R +PI S
Sbjct: 308 KN---IMTIDGGGDHSLILKSDGTVWTWGNNENGQLGDGTTMSR------ATPIQAS--- 355
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +A G H++ + DG +W+WG R+G LG G + P +V
Sbjct: 356 ----TLSNVTAIASGEQHSIALKSDG-TIWAWGSNRNGQLGDGSISNRSTPVLV 404
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 124/291 (42%), Gaps = 49/291 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNC---PLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + ++ G S+A+ + G +W WG+ L D +T+ S P V +
Sbjct: 107 LNNVTAIAGGAWHSVALTSDGTVWTWGSNWAGQLGDGTTK------SRNKPVQVNNL--K 158
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+ +A H +AL S G ++WG N GQLG G R P + N
Sbjct: 159 NITAIASKGLHNLALKSDG--------TVWTWGRNIYGQLGDGTTTDRNTPVQTRSLN-- 208
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ + G +H+ L + + WT+GL + GQLG GT + +P V +
Sbjct: 209 ---TIISIAGGGYHS--LAQKA------DGTIWTWGLNQYGQLGDGTITNRTIPVLVNGI 257
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ CG H+ V+ + G +W WG + L ++ R+ +P+
Sbjct: 258 KDVSM---IRCGGDHSIVLKNNGTIWIWGFNQHGQLGDRSTDNRS------TPV------ 302
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
P G ++ + + G H++++ DG +W+WG +G LG G T+ P
Sbjct: 303 PMG-DLKNIMTIDGGGDHSLILKSDG-TVWTWGNNENGQLGDGTTMSRATP 351
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 97/234 (41%), Gaps = 38/234 (16%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
T+++V+ GS H +AL S G +WG N +GQLG G R P ++ N
Sbjct: 59 TILQVSGGSFHSIALKSDG--------TVLTWGQNMHGQLGDGTNTDRKIPVQVKDLNN- 109
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + G++H+ LT + WT+G GQLG GTT+S P QV L
Sbjct: 110 ----VTAIAGGAWHSVALTS--------DGTVWTWGSNWAGQLGDGTTKSRNKPVQVNNL 157
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ S H + S G VW+WG L + RN +P+
Sbjct: 158 KNITAIASKG---LHNLALKSDGTVWTWGRNIYGQLGDGTTTDRN------TPV------ 202
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +A G H++ DG +W+WG + G LG G + P +V
Sbjct: 203 -QTRSLNTIISIAGGGYHSLAQKADG-TIWTWGLNQYGQLGDGTITNRTIPVLV 254
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 32/178 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ + ++ GG S+ + N G +W+WG + L D ST+ + TP P+ D
Sbjct: 257 IKDVSMIRCGGDHSIVLKNNGTIWIWGFNQHGQLGDRSTD------NRSTPVPMGDLK-- 308
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
++ + G +H + L S G ++WG N NGQLG G SR P T +
Sbjct: 309 NIMTIDGGGDHSLILKSDG--------TVWTWGNNENGQLGDGTTMSRATPIQASTLSN- 359
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V + G H+ L + W +G NGQLG G+ + P VK
Sbjct: 360 ----VTAIASGEQHSIALKS--------DGTIWAWGSNRNGQLGDGSISNRSTPVLVK 405
>gi|297696825|ref|XP_002825580.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
ligase HERC1 [Pongo abelii]
Length = 4864
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V V+ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDVSIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4097 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4153
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4154 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4202
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P+++ L + + V CG +
Sbjct: 4203 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCG-IGIKKVACGTQFS 4254
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4255 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPLLA------GVIIED---VAVGA 4303
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + +G +++WG G LG G T P +V
Sbjct: 4304 EHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4340
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4244 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPLLAGVIIE 4297
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4298 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTGLQGKN-- 4347
Query: 121 AVYEVTCGSFHTA 133
V +++ G H+A
Sbjct: 4348 -VRQISAGRCHSA 4359
>gi|194040610|ref|XP_001928937.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 1 [Sus
scrofa]
Length = 568
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 114/250 (45%), Gaps = 31/250 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + G + ++ GS HVV + GE + +WG N QLG G
Sbjct: 102 STIEPRRLDSLSGKKIACLSYGSGPHVVLATTEGEVF--------TWGHNAYSQLGNGTT 153
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 154 NHGLVPCHIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 203
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q +V++ CG + V G+V+ WG N L
Sbjct: 204 GSTANQPIPRRVTGCLQNKTVVNIACGQMCSMAVVDTGEVYVWGYNG------NGQLGLG 257
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
G+ +P I+ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 258 SGGNQPTPCRIA--ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNK 311
Query: 283 IDFFAPAIVL 292
+ P V+
Sbjct: 312 SNQSYPTPVI 321
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 108/254 (42%), Gaps = 47/254 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 171 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQPIPRRVTGCLQNK 222
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + D E W G NGQLG G+ + P ++ L
Sbjct: 223 --TVVNIACGQMCSMAVV------DTGEVYVW--GYNGNGQLGLGSGGNQPTPCRIAAL- 271
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILIS 234
Q + + V CG HT V++ G V++WG + G G N S +P+++
Sbjct: 272 QGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYP--------TPVIVE 323
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDF 285
K + AC +AHT G ++ WG RG+S L T
Sbjct: 324 -------KDRIIEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVTLPHLTHFSSTDDVFAC 376
Query: 286 FAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 377 FATPAVTWRLLSVE 390
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 84/210 (40%), Gaps = 25/210 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD-FHGHTVVK 61
Q+ V G SL + + G ++ WG +S G S + P V TVV
Sbjct: 170 QVIEVACGSYHSLVLTSDGEVFAWG---YNNSGQVGSGSTANQPIPRRVTGCLQNKTVVN 226
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ACG +A+V GE Y WG N NGQLGLG ++ P I
Sbjct: 227 IACGQMCSMAVVDTGEV--------YVWGYNGNGQLGLGSGGNQPTPCRIAALQ---GIR 275
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V V CG HT +LT E + +G GQLG G + P V +
Sbjct: 276 VQRVACGYAHTLVLTD--------EGQVYAWGANSYGQLGTGNKSNQSYPTPVIVEKDRI 327
Query: 182 YLVSVDCGLFHTSVV-SSAGDVWSWGMEKG 210
++ C HTS + G V+ WG +G
Sbjct: 328 IEIAA-CHSAHTSAAKTQGGHVYMWGQCRG 356
>gi|397515719|ref|XP_003828093.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Pan
paniscus]
Length = 4798
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V V+ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDVSIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 128/278 (46%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4031 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4087
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4088 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4136
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ + SM W FG G+ G+LG G + + P+++ L + + V CG +
Sbjct: 4137 AVS-------VDGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCG-IGIKKVACGTQFS 4188
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4189 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVIIED---VAVGA 4237
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + +G +++WG G LG G T P +V
Sbjct: 4238 EHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4274
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4178 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVIIE 4231
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4232 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTGLQGKN-- 4281
Query: 121 AVYEVTCGSFHTALLTHRKRP 141
V +++ G H+A T P
Sbjct: 4282 -VRQISAGRCHSAAWTAPPVP 4301
>gi|355692784|gb|EHH27387.1| hypothetical protein EGK_17574 [Macaca mulatta]
Length = 4862
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V V+ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDVSIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4094 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4150
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4151 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4199
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P+++ L + + V CG +
Sbjct: 4200 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCG-IGIKKVACGTQFS 4251
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4252 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GMIIED---VAVGA 4300
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + +G +++WG G LG G T P +V
Sbjct: 4301 EHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4337
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4241 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGMIIE 4294
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4295 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTGLQGKN-- 4344
Query: 121 AVYEVTCGSFHTA 133
+ +++ G H+A
Sbjct: 4345 -IRQISAGRCHSA 4356
>gi|296213415|ref|XP_002753260.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 isoform 1
[Callithrix jacchus]
gi|390468428|ref|XP_003733941.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 isoform 2
[Callithrix jacchus]
Length = 4860
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V V+ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDVSIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4093 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4149
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4150 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4198
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4199 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4250
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4251 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQVPVLA------GVVIED---VAVGA 4299
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + +G +++WG G LG G T P +V
Sbjct: 4300 EHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4336
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P V G +
Sbjct: 4240 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQVPVLAGVVIE 4293
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4294 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTGLQGKN-- 4343
Query: 121 AVYEVTCGSFHTA 133
V +++ G H+A
Sbjct: 4344 -VRQISAGRCHSA 4355
>gi|212721370|ref|NP_001132850.1| uncharacterized protein LOC100194342 [Zea mays]
gi|194695574|gb|ACF81871.1| unknown [Zea mays]
gi|413924971|gb|AFW64903.1| putative regulator of chromosome condensation (RCC1) family protein
[Zea mays]
Length = 418
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 129/309 (41%), Gaps = 56/309 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V AG S A+ G L++WG G V S TP+ V V V
Sbjct: 117 RVVEVSAGNHHSCAVTADGKLFVWGRNSGGQLGLGKGAGKVVS-TPTKVDCLTDLRVKTV 175
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL---------RPKIIET 113
A GSEH +A+ GE SWGA +G+LG G + S L P++I+
Sbjct: 176 ALGSEHSIAVTEEGEVL--------SWGAAGSGRLGHGRQSSILGFSLTSTEYTPRLIKN 227
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
F+ + ++ G H+A + + F G+ + G G P
Sbjct: 228 FDGIK---IKKIAAGMLHSACIDEKGT----------LFIFGQKTEKGFGRPNEEFRPNI 274
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
V+E+P + V CG +HT VV+ +GD++SWG + N L SP ++
Sbjct: 275 VEEIP---FSEEVACGGYHTCVVTDSGDLYSWGSNE------NGCLGLGGTDMVRSPEIL 325
Query: 234 SGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWSW----------GRGRSGVLGTGKT 282
+ F+ PV +V+CG HT +V+ D W W G G LG G
Sbjct: 326 KSS-----LFKLPVSKVSCGWKHTAVVSGDDIYTWGWGGANGTFFEEGHSSGGQLGHGND 380
Query: 283 IDFFAPAIV 291
+D+F P +V
Sbjct: 381 VDYFEPMMV 389
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 110/267 (41%), Gaps = 43/267 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG-----NCPLPDSSTEGGFSLVSS-FTPSPVWDFHG 56
++ +V G S+A+ G + WG S+ GFSL S+ +TP + +F G
Sbjct: 171 RVKTVALGSEHSIAVTEEGEVLSWGAAGSGRLGHGRQSSILGFSLTSTEYTPRLIKNFDG 230
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+ K+A G H + G + + G G RP I+E
Sbjct: 231 IKIKKIAAGMLHSACIDEKGTLFI----------FGQKTEKGFGRPNEEFRPNIVE---- 276
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ P++ EV CG +HT ++T D+ +++G ENG LG G T PE +K
Sbjct: 277 EIPFS-EEVACGGYHTCVVTDS---GDL-----YSWGSNENGCLGLGGTDMVRSPEILKS 327
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGD---VWSWGMEKGL----GLCPNASLTRNEAGDAIS 229
+ + V CG HT+VVS GD W WG G G L D
Sbjct: 328 SLFKLPVSKVSCGWKHTAVVS--GDDIYTWGWGGANGTFFEEGHSSGGQLGHGNDVDYFE 385
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHT 256
P+++ P G + V V+CG HT
Sbjct: 386 PMMV----PFGTNAR-AVHVSCGFNHT 407
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 90/198 (45%), Gaps = 29/198 (14%)
Query: 89 WGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESM 148
WG + G+LGLG ESR P + F + + CG HT LT R
Sbjct: 33 WGNGDYGRLGLGSLESRWSPTVCPFFLARAADPPASLACGGAHTLFLTQNGR-------- 84
Query: 149 CWTFGLGENGQLGHGTTQSALV-PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM 207
+ GL + GQLG GT+ + ++ P ++ + V V V G H+ V++ G ++ WG
Sbjct: 85 VFATGLNDFGQLGIGTSVTHMLEPVEISGFHERV--VEVSAGNHHSCAVTADGKLFVWGR 142
Query: 208 EKG--LGLCPNAS--LTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
G LGL A ++ D ++ + + VA G+ H++ VT++G
Sbjct: 143 NSGGQLGLGKGAGKVVSTPTKVDCLTDLRVK-------------TVALGSEHSIAVTEEG 189
Query: 264 YKLWSWGRGRSGVLGTGK 281
L SWG SG LG G+
Sbjct: 190 EVL-SWGAAGSGRLGHGR 206
>gi|114657534|ref|XP_001174017.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 isoform 1
[Pan troglodytes]
gi|410226250|gb|JAA10344.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
RCC1 (CHC1)-like domain (RLD) 1 [Pan troglodytes]
gi|410226252|gb|JAA10345.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
RCC1 (CHC1)-like domain (RLD) 1 [Pan troglodytes]
gi|410263976|gb|JAA19954.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
RCC1 (CHC1)-like domain (RLD) 1 [Pan troglodytes]
gi|410293838|gb|JAA25519.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
RCC1 (CHC1)-like domain (RLD) 1 [Pan troglodytes]
gi|410293840|gb|JAA25520.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
RCC1 (CHC1)-like domain (RLD) 1 [Pan troglodytes]
gi|410336799|gb|JAA37346.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
RCC1 (CHC1)-like domain (RLD) 1 [Pan troglodytes]
Length = 4861
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V V+ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDVSIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 128/278 (46%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4094 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4150
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4151 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4199
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ + SM W FG G+ G+LG G + + P+++ L + + V CG +
Sbjct: 4200 AVS-------VDGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCG-IGIKKVACGTQFS 4251
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4252 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVIIED---VAVGA 4300
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + +G +++WG G LG G T P +V
Sbjct: 4301 EHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4337
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4241 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVIIE 4294
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4295 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTGLQGKN-- 4344
Query: 121 AVYEVTCGSFHTA 133
V +++ G H+A
Sbjct: 4345 -VRQISAGRCHSA 4356
>gi|403298208|ref|XP_003939923.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Saimiri
boliviensis boliviensis]
Length = 4860
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V V+ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDVSIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4093 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4149
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4150 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4198
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ S+ W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4199 AVSADG-------SVVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4250
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4251 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVIIED---VAVGA 4299
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + +G +++WG G LG G T P +V
Sbjct: 4300 EHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4336
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4240 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVIIE 4293
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4294 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTGLQGKN-- 4343
Query: 121 AVYEVTCGSFHTA 133
V +++ G H+A
Sbjct: 4344 -VRQISAGRCHSA 4355
>gi|156396932|ref|XP_001637646.1| predicted protein [Nematostella vectensis]
gi|156224760|gb|EDO45583.1| predicted protein [Nematostella vectensis]
Length = 1345
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 136/293 (46%), Gaps = 70/293 (23%)
Query: 46 FTPSPVWDFHGHTVVKVAC--GSE-HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
FT SP+ G+ V+++A GS+ H +AL +GE + SWG + G+LG G+
Sbjct: 559 FTLSPISALQGYVVIQIATSRGSDGHSLALTDSGEVF--------SWGDGDYGKLGHGNS 610
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
+ + RP+ IE + V + CG H+A++T ++ +TFG G+ G+LGH
Sbjct: 611 DRQRRPRQIEALRGEE---VVNMACGFKHSAVVT--------VDGKLFTFGNGDYGRLGH 659
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD-VWSWG----MEKGLGLCPNA 217
G + + PE+V L ++ + V CGL HT V+S+ G+ VW++G + GLG C
Sbjct: 660 GNSANKKTPERVTALEKHA-IGQVACGLNHTLVLSADGNTVWAFGDGDYGKLGLGSC--T 716
Query: 218 SLTRNEAGDAISPI-------------LISGNGP-----------------HGPKFQDPV 247
+ T +A D ++ I +++ +G GP+ +
Sbjct: 717 AKTSPQAIDVLAGIGCKKICCGTQFSVVLTNDGRVFSFGQERLTGQPEGRLRGPQKPQQI 776
Query: 248 Q---------VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
Q V GA H + +T G ++W WG G LG G + P ++
Sbjct: 777 QALASHFIDDVCVGAEHVLALTSTG-EVWGWGNNVDGQLGLGHSNAQREPCVI 828
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 89/206 (43%), Gaps = 26/206 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ ++ G S + G L+ +GN D G + + TP V H + +V
Sbjct: 626 EVVNMACGFKHSAVVTVDGKLFTFGNG---DYGRLGHGNSANKKTPERVTALEKHAIGQV 682
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG H + L + G T +++G + G+LGLG ++ P+ I+ +
Sbjct: 683 ACGLNHTLVLSADGNT-------VWAFGDGDYGKLGLGSCTAKTSPQAIDVL---AGIGC 732
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH--GTTQSALVPEQVKELPQY 180
++ CG+ + +LT+ R F G+ G G + P+Q++ L +
Sbjct: 733 KKICCGTQFSVVLTNDGR----------VFSFGQERLTGQPEGRLRGPQKPQQIQALASH 782
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWG 206
++ V G H ++S G+VW WG
Sbjct: 783 -FIDDVCVGAEHVLALTSTGEVWGWG 807
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+IC G S+ + N G ++ +G L EG L P + H + V
Sbjct: 734 KIC---CGTQFSVVLTNDGRVFSFGQERL-TGQPEG--RLRGPQKPQQIQALASHFIDDV 787
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
G+EHV+AL S GE + WG N +GQLGLG ++ P +I + +
Sbjct: 788 CVGAEHVLALTSTGEV--------WGWGNNVDGQLGLGHSNAQREPCVIPDLKGKN---I 836
Query: 123 YEVTCGSFHTALLT 136
+++ G H+A T
Sbjct: 837 RQISAGRNHSAAWT 850
>gi|332235891|ref|XP_003267138.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
ligase HERC1 [Nomascus leucogenys]
Length = 4855
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V V+ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDVSIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 31/237 (13%)
Query: 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
G VV+++CG +H + S G+ + ++G + G+LGLG+ ++ P+ +
Sbjct: 4126 QGEEVVQMSCGFKHSAVVTSDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTAL 4177
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
+ + +V CG HT ++ SM W FG G+ G+LG G + + P+++
Sbjct: 4178 EG---YQIGQVACGLNHTLAVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKI 4227
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS 234
L + + V CG + ++ G V+++G ++ +GL P RN P+L
Sbjct: 4228 DVLCG-IGIKKVACGTQFSVALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA- 4283
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G +D VA GA HT+ + +G +++WG G LG G T P +V
Sbjct: 4284 -----GVIIED---VAVGAEHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4331
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 25/143 (17%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-- 207
+++G G+ G+LGHG + P Q +E+ V + CG H++VV+S G ++++G
Sbjct: 4103 FSWGDGDYGKLGHGNSDRQRRPXQGEEV------VQMSCGFKHSAVVTSDGKLFTFGNGD 4156
Query: 208 --EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
GLG N L E A+ I QVACG HT+ V+ DG
Sbjct: 4157 YGRLGLGNTSNKKLP--ERVTALEGYQIG-------------QVACGLNHTLAVSADGSM 4201
Query: 266 LWSWGRGRSGVLGTGKTIDFFAP 288
+W++G G G LG G + +P
Sbjct: 4202 VWAFGDGDYGKLGLGNSTAKSSP 4224
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4235 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVIIE 4288
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4289 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTGLQGKN-- 4338
Query: 121 AVYEVTCGSFHTA 133
V +++ G H+A
Sbjct: 4339 -VRQISAGRCHSA 4350
>gi|1477565|gb|AAD12586.1| p532 [Homo sapiens]
Length = 4861
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V V+ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDVSIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4094 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4150
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4151 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4199
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P+++ L + + V CG +
Sbjct: 4200 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCG-IGIKKVACGTQFS 4251
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4252 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVIIED---VAVGA 4300
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + +G +++WG G LG G T P +V
Sbjct: 4301 EHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4337
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG E
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWG-EG 538
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
G L ++ P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 539 DFG-----RLGHGDSNSRNIPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4241 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVIIE 4294
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4295 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTGLQGKN-- 4344
Query: 121 AVYEVTCGSFHTALLTHRKRP 141
V +++ G H+A T P
Sbjct: 4345 -VRQISAGRCHSAAWTAPPVP 4364
>gi|126131099|ref|NP_003913.3| probable E3 ubiquitin-protein ligase HERC1 [Homo sapiens]
gi|296434522|sp|Q15751.2|HERC1_HUMAN RecName: Full=Probable E3 ubiquitin-protein ligase HERC1; AltName:
Full=HECT domain and RCC1-like domain-containing protein
1; AltName: Full=p532; AltName: Full=p619
gi|119598061|gb|EAW77655.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
RCC1 (CHC1)-like domain (RLD) 1, isoform CRA_b [Homo
sapiens]
gi|119598062|gb|EAW77656.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
RCC1 (CHC1)-like domain (RLD) 1, isoform CRA_b [Homo
sapiens]
Length = 4861
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V V+ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDVSIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4094 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4150
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4151 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4199
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P+++ L + + V CG +
Sbjct: 4200 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCG-IGIKKVACGTQFS 4251
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4252 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVIIED---VAVGA 4300
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + +G +++WG G LG G T P +V
Sbjct: 4301 EHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4337
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4241 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVIIE 4294
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4295 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTGLQGKN-- 4344
Query: 121 AVYEVTCGSFHTALLTHRKRP 141
V +++ G H+A T P
Sbjct: 4345 -VRQISAGRCHSAAWTAPPVP 4364
>gi|410961060|ref|XP_003987103.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
ligase HERC1 [Felis catus]
Length = 4861
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ V+ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVVEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V ++ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4094 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4150
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4151 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4199
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4200 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4251
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4252 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 4300
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P +V
Sbjct: 4301 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4337
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P +V
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVV 608
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4241 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 4294
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4295 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4344
Query: 121 AVYEVTCGSFHTALLTHRKRP 141
V +++ G H+A T P
Sbjct: 4345 -VRQISAGRCHSAAWTAPPVP 4364
>gi|410336797|gb|JAA37345.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
RCC1 (CHC1)-like domain (RLD) 1 [Pan troglodytes]
Length = 4854
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V V+ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDVSIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 128/278 (46%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4087 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4143
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4144 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4192
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ + SM W FG G+ G+LG G + + P+++ L + + V CG +
Sbjct: 4193 AVS-------VDGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCG-IGIKKVACGTQFS 4244
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4245 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVIIED---VAVGA 4293
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + +G +++WG G LG G T P +V
Sbjct: 4294 EHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4330
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4234 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVIIE 4287
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4288 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTGLQGKN-- 4337
Query: 121 AVYEVTCGSFHTA 133
V +++ G H+A
Sbjct: 4338 -VRQISAGRCHSA 4349
>gi|444730943|gb|ELW71312.1| putative E3 ubiquitin-protein ligase HERC1 [Tupaia chinensis]
Length = 4409
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 455 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 511
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y+WG + G+LG GD SR P +++ +
Sbjct: 512 VCVSAGYRHSAAVTEDGE--------LYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 560
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 561 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 610
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 611 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 662
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V ++ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 663 ----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 707
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 708 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 760
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 761 SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVATSILG 814
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 815 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 844
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 120/269 (44%), Gaps = 59/269 (21%)
Query: 58 TVVKVACGSE-HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
T + +CGS+ H +AL +GE + SWG + G+LG G+ + + RP+ IE
Sbjct: 3620 TQLVTSCGSDGHSMALTESGEVF--------SWGDGDYGKLGHGNSDRQRRPRQIEALQG 3671
Query: 117 DSPWAVYEVTCGSFHTALLT----------------------HRKRP-------NDMLE- 146
+ V +++CG H+A++T ++K P N L
Sbjct: 3672 EE---VVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVACGLNHTLAV 3728
Query: 147 ----SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV 202
SM W FG G+ G+LG G + + P++V L + + V CG + ++ G V
Sbjct: 3729 SADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFSVALTKDGHV 3787
Query: 203 WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
+++G ++ +GL P RN P+L G +D VA GA HT+ +
Sbjct: 3788 YTFGQDRLIGL-PEGR-ARNHNRPQQVPVLA------GVVIED---VAVGAEHTLALAST 3836
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G +++WG G LG G T P +V
Sbjct: 3837 G-DVYAWGSNSEGQLGLGHTNHVREPTLV 3864
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 426 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 477
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 478 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 537
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 538 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 584
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 585 GGGDNGKLGHGDTNRVYKPKVI 606
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P V G +
Sbjct: 3768 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQVPVLAGVVIE 3821
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 3822 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 3871
Query: 121 AVYEVTCGSFHTA 133
V +++ G H+A
Sbjct: 3872 -VRQISAGRCHSA 3883
>gi|383422563|gb|AFH34495.1| putative E3 ubiquitin-protein ligase HERC1 [Macaca mulatta]
Length = 4846
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V V+ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDVSIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4079 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4135
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4136 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4184
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P+++ L + + V CG +
Sbjct: 4185 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCG-IGIKKVACGTQFS 4236
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4237 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GMIIED---VAVGA 4285
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + +G +++WG G LG G T P +V
Sbjct: 4286 EHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4322
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4226 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGMIIE 4279
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4280 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTGLQGKN-- 4329
Query: 121 AVYEVTCGSFHTA 133
V +++ G H+A
Sbjct: 4330 -VRQISAGRCHSA 4341
>gi|380817672|gb|AFE80710.1| putative E3 ubiquitin-protein ligase HERC1 [Macaca mulatta]
Length = 4854
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V V+ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDVSIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4087 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4143
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4144 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4192
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P+++ L + + V CG +
Sbjct: 4193 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCG-IGIKKVACGTQFS 4244
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4245 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GMIIED---VAVGA 4293
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + +G +++WG G LG G T P +V
Sbjct: 4294 EHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4330
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4234 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGMIIE 4287
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4288 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTGLQGKN-- 4337
Query: 121 AVYEVTCGSFHTA 133
V +++ G H+A
Sbjct: 4338 -VRQISAGRCHSA 4349
>gi|4079811|gb|AAD08658.1| Herc2 [Mus musculus]
Length = 4836
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 116/242 (47%), Gaps = 38/242 (15%)
Query: 46 FTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 483 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDTV 534
Query: 104 SRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
PK+I F+ + + V + CGS ++A +T E +T+G G G+LGH
Sbjct: 535 PLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLGH 586
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
G+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 587 GSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KLG 639
Query: 221 RNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
R + +P LI K Q D ++V CG+ ++ +T DG +++SWG+G + LG
Sbjct: 640 RGGSDGCKTPKLIE-------KLQDLDVIKVRCGSQFSIALTKDG-QVYSWGKGDNQRLG 691
Query: 279 TG 280
G
Sbjct: 692 HG 693
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 128/286 (44%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +A G
Sbjct: 3052 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIQALKTKRIRDIAYG 3108
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H L S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3109 SSHSAPLTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3157
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3158 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3210
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3211 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3260
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3261 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3304
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 4045 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4101
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 4102 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VIDI 4150
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4151 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4201
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4202 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4249
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4250 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4297
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 112/255 (43%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S + ++G L+ WG L + G + P V GH V++V
Sbjct: 3101 RIRDIAYGSSHSAPLTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3157
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3158 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3208
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3209 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3259
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3260 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3308
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3309 GQKITRVACGSSHSV 3323
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 129/296 (43%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSP--VWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G G + S P P + + V KVA
Sbjct: 2999 AGGSKSLFAVTVEGKVYSCGE------ATNGRLGLGMSSGTVPIPRQITALSSYVVKKVA 3052
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++I+
Sbjct: 3053 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIQALKTKR--- 3101
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ GS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3102 IRDIAYGSSHSAPLTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3152
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3153 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3203
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3204 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3252
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4094 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4147
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4148 IDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4198
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4199 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4249
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4250 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4300
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4301 -QGKKVN---RVACGSAHTL 4316
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3947 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4003
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 4004 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 4054
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 4055 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4105
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H + +ACG+
Sbjct: 4106 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVIDIACGS 4154
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4155 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4182
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + V+KV CGS+
Sbjct: 613 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQF 669
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 670 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 718
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H +LT E W G N Q H T PE P ++V +
Sbjct: 719 STHCLVLTEDS------EVHSW----GSNDQCQHFDTLGVTKPEPTA-FPGLDSKHIVGI 767
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 768 ACGPAQSFAWSSCSE-WSIGLR 788
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 518 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 577
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 578 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 625
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 626 QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3957 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3994
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3995 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 4053
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 4054 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4100
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4101 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4139
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 467 LSRNGRVYTQAYNSDMLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 525
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 526 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 578
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 579 GNYGRLGHGSSEDEAIPMLV 598
>gi|313221390|emb|CBY32143.1| unnamed protein product [Oikopleura dioica]
Length = 560
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 122/292 (41%), Gaps = 38/292 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ +I + K S+AI G +W WG+ D G + +P + +V
Sbjct: 213 VRKILTSKGSDGHSMAIGKNGQIWTWGD---GDYGKLGHGDSTTQKSPKLIEALASRVIV 269
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
CG H A+ AG Y WG + G+LGLGD R P + + S
Sbjct: 270 DADCGHRHSAAVCDAGH--------LYMWGEGDYGRLGLGDALQRSVPVQVPDIREAS-- 319
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+V CG HT +L+ R W+FG ENG+LGHG T P+ + L Q
Sbjct: 320 ---QVVCGFNHTVVLSTDGR-------TVWSFGAAENGKLGHGDTNRQFRPKIIDAL-QG 368
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ + + G ++ V+ G ++ WG LG N + D + G G
Sbjct: 369 LTITQIAAGTQISAAVTREGALYVWGFGPCLG---------NGSSDETFMLPKVVRGLSG 419
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI-DFFAPAIV 291
D +A G H V +T DG +++WG ++G GTG + + +P +V
Sbjct: 420 RVVID---IAIGENHVVALTKDGL-VFTWGNNQNGQCGTGSGMATYTSPQMV 467
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 84/244 (34%), Gaps = 68/244 (27%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I G S A+ +AG L+MWG D G + P V D +V
Sbjct: 268 IVDADCGHRHSAAVCDAGHLYMWGE---GDYGRLGLGDALQRSVPVQVPDIR--EASQVV 322
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII------------ 111
CG H V L + G T +S+GA NG+LG GD + RPKII
Sbjct: 323 CGFNHTVVLSTDGRT-------VWSFGAAENGKLGHGDTNRQFRPKIIDALQGLTITQIA 375
Query: 112 ------------------------------ETF------NQDSPWAVYEVTCGSFHTALL 135
ETF S V ++ G H L
Sbjct: 376 AGTQISAAVTREGALYVWGFGPCLGNGSSDETFMLPKVVRGLSGRVVIDIAIGENHVVAL 435
Query: 136 THRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
T + + +T+G +NGQ G G+ + Q+ + + V G HT V
Sbjct: 436 TK--------DGLVFTWGNNQNGQCGTGSGMATYTSPQMVQGLHGAGIQQVTAGTTHTFV 487
Query: 196 VSSA 199
S+A
Sbjct: 488 WSAA 491
>gi|432847192|ref|XP_004065976.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like [Oryzias
latipes]
Length = 1049
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 98/206 (47%), Gaps = 27/206 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL--VSSFTPSPVWDFHGHTVVK 61
I V G +A+ G L+ WG +SS + G S +PSPV G + +
Sbjct: 138 ISQVVCGNQHCIALSRDGQLFTWGQ----NSSGQLGLGKGETSKLSPSPVKSLAGIPLAQ 193
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ G +H AL +G + WG N GQLGL D++ R P I+ S
Sbjct: 194 ITAGGDHCFALSLSGAVF--------GWGKNKAGQLGLNDKQDRAVPCHIKFLR--SQRV 243
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
VY ++CG HTA LT +TFG G GQLGHG++ + L+P +V EL
Sbjct: 244 VY-ISCGDEHTAALTK--------SGGLFTFGDGSRGQLGHGSSNNELLPRRVMEL-MGT 293
Query: 182 YLVSVDCGLFHT-SVVSSAGDVWSWG 206
+ + CG HT + V S+G V+++G
Sbjct: 294 EVSQITCGRHHTLAFVPSSGTVYAFG 319
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 139/326 (42%), Gaps = 61/326 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT----PSPVWDFHGHT 58
+I V G S+A++ G +++WG + G L ++ T P + H+
Sbjct: 84 KITMVSCGRAHSVAVNEQGQVFVWG------AGDGGQLGLETAETAVRIPRLLKKLCDHS 137
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE-SRLRPKIIETFNQD 117
+ +V CG++H +AL G+ ++WG N++GQLGLG E S+L P +++
Sbjct: 138 ISQVVCGNQHCIALSRDGQ--------LFTWGQNSSGQLGLGKGETSKLSPSPVKSL-AG 188
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A ++T G H L+ L + +G + GQLG Q VP +K L
Sbjct: 189 IPLA--QITAGGDHCFALS--------LSGAVFGWGKNKAGQLGLNDKQDRAVPCHIKFL 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEA---GDAISP 230
+ +V + CG HT+ ++ +G ++++G + G G N L R G +S
Sbjct: 239 -RSQRVVYISCGDEHTAALTKSGGLFTFGDGSRGQLGHGSSNNELLPRRVMELMGTEVS- 296
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
Q+ CG HT+ ++++G G LGTG D +P
Sbjct: 297 -----------------QITCGRHHTLAFVPSSGTVYAFGCNSHGQLGTGILADLRSPH- 338
Query: 291 VLWPPLTEEFKQDELNTGGLDDEIKT 316
P+ +F L G + I T
Sbjct: 339 ----PVKNDFLTLNLRKGKVYLRIDT 360
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 126/291 (43%), Gaps = 45/291 (15%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
V GG +L + G+++ G+ +S + G + +P V + V+CG
Sbjct: 38 VACGGQHTLFLLQDGSVYTCGS----NSCGQLGHDKAGN-SPELVGALDTQKITMVSCGR 92
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEV 125
H VA+ G+ + WGA + GQLGL E+ +R P++++ S + +V
Sbjct: 93 AHSVAVNEQGQVF--------VWGAGDGGQLGLETAETAVRIPRLLKKLCDHS---ISQV 141
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKELPQYVYLV 184
CG+ H L+ + +T+G +GQLG G + S L P VK L + L
Sbjct: 142 VCGNQHCIALSR--------DGQLFTWGQNSSGQLGLGKGETSKLSPSPVKSLAG-IPLA 192
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF- 243
+ G H +S +G V+ WG K L N+ D P I KF
Sbjct: 193 QITAGGDHCFALSLSGAVFGWGKNKA------GQLGLNDKQDRAVPCHI--------KFL 238
Query: 244 --QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
Q V ++CG HT +T G L+++G G G LG G + + P V+
Sbjct: 239 RSQRVVYISCGDEHTAALTKSG-GLFTFGDGSRGQLGHGSSNNELLPRRVM 288
>gi|350578534|ref|XP_001927286.4| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Sus scrofa]
Length = 4859
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 118/454 (25%), Positives = 185/454 (40%), Gaps = 91/454 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLP-----DSSTEGGFSLVSSFTPSPVWDFH 55
+ ++ S K +LA G ++ WG+ +SST+ L+
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQG-------PLQ 509
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G VV V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 510 GKVVVCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDIS 561
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++
Sbjct: 562 N-----VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIE 609
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q +++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 610 AL-QGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEE 661
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
V ++ G +H + ++ D ++++WG G G G + P
Sbjct: 662 LAA-----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------P 705
Query: 296 LTEEFKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLL 339
+T+ K GLD I + + A RD ++ + +EE
Sbjct: 706 ITKPKK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFS 759
Query: 340 QSKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DR 393
+ S +ERY ++ I PF P S + F + K N L A
Sbjct: 760 HLR-SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVAT 812
Query: 394 SKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
S L R RN+L + D + IQE+V E L
Sbjct: 813 SILGRQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4092 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4148
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4149 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4197
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4198 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4249
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4250 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 4298
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P +V
Sbjct: 4299 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4335
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4239 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 4292
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4293 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4342
Query: 121 AVYEVTCGSFHTALLTHRKRP 141
V +++ G H+A T P
Sbjct: 4343 -VRQISAGRCHSAAWTAPPVP 4362
>gi|380788265|gb|AFE66008.1| putative E3 ubiquitin-protein ligase HERC1 [Macaca mulatta]
Length = 4861
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V V+ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDVSIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4094 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4150
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4151 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4199
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P+++ L + + V CG +
Sbjct: 4200 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCG-IGIKKVACGTQFS 4251
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4252 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GMIIED---VAVGA 4300
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + +G +++WG G LG G T P +V
Sbjct: 4301 EHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4337
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4241 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGMIIE 4294
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4295 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTGLQGKN-- 4344
Query: 121 AVYEVTCGSFHTA 133
V +++ G H+A
Sbjct: 4345 -VRQISAGRCHSA 4356
>gi|339010099|ref|ZP_08642670.1| copper amine oxidase domain protein [Brevibacillus laterosporus LMG
15441]
gi|338773369|gb|EGP32901.1| copper amine oxidase domain protein [Brevibacillus laterosporus LMG
15441]
Length = 392
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 136/321 (42%), Gaps = 48/321 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTV 59
+S + V G ++A+ G +W WG + E S + TP V W V
Sbjct: 82 LSDVLMVDTGTSHTVALQKDGTVWTWGWSAYGELGNEKAKS--TEKTPHHVKWL---SDV 136
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+V G +AL ED +++G N +GQLG G E+R++P +
Sbjct: 137 KQVRAGENFTLALK--------EDGTVWAFGKNRSGQLGDGTTETRVKPVQVSGLTD--- 185
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ + G + L+ + W +G GQLG+GT + AL P QV EL
Sbjct: 186 --IVAIDAGEEFSLALSE--------DGTVWAWGNNSVGQLGNGTREKALQPVQVSELTD 235
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG-LGLCPNASLTRNEAGDAISPILISGNGP 238
++++ G V+S GDV+ WG +G LG N S RN SP+LI G
Sbjct: 236 ---VIAISTGEKQGYAVTSNGDVYGWGYNQGKLGDGTNKS--RN------SPVLIDG--- 281
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTE 298
D + V G HT+ + +DG +W+WG G LG G +++ ++ TE
Sbjct: 282 ----IYDVIAVDSGKQHTLALKEDG-TVWAWGTNTHGQLGYGTPVNYSMTPNQVFLESTE 336
Query: 299 EFKQD-ELNTGGLDDEIKTKD 318
Q ++ GG KD
Sbjct: 337 PLNQIVAIDAGGFHSHAIKKD 357
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 96/219 (43%), Gaps = 34/219 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ I ++ AG SLA+ G +W WGN + G + + P V + V+
Sbjct: 183 LTDIVAIDAGEEFSLALSEDGTVWAWGNNSV---GQLGNGTREKALQPVQVSELT--DVI 237
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++ G + A+ S G+ Y WG N G+LG G +SR P +I D +
Sbjct: 238 AISTGEKQGYAVTSNGD--------VYGWGYNQ-GKLGDGTNKSRNSPVLI-----DGIY 283
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-TQSALVPEQV--KEL 177
V V G HT L + W +G +GQLG+GT ++ P QV +
Sbjct: 284 DVIAVDSGKQHTLALKE--------DGTVWAWGTNTHGQLGYGTPVNYSMTPNQVFLEST 335
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG 212
+V++D G FH+ + G VWSWG E GLG
Sbjct: 336 EPLNQIVAIDAGGFHSHAIKKDGTVWSWGFNSNGELGLG 374
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 123/299 (41%), Gaps = 54/299 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S + V+AG +LA+ G +W +G + L D +TE + V S + D
Sbjct: 133 LSDVKQVRAGENFTLALKEDGTVWAFGKNRSGQLGDGTTE---TRVKPVQVSGLTD---- 185
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V + G E +AL ED ++WG N+ GQLG G RE L+P +
Sbjct: 186 -IVAIDAGEEFSLAL--------SEDGTVWAWGNNSVGQLGNGTREKALQPVQVSELTD- 235
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN-GQLGHGTTQSALVPEQVKE 176
V ++ G +T +G G N G+LG GT +S P +
Sbjct: 236 ----VIAISTGEKQGYAVTSNGD----------VYGWGYNQGKLGDGTNKSRNSPVLIDG 281
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPIL 232
+ +++VD G HT + G VW+WG G G N S+T N+ +
Sbjct: 282 IYD---VIAVDSGKQHTLALKEDGTVWAWGTNTHGQLGYGTPVNYSMTPNQ-------VF 331
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ P V + G H+ + DG +WSWG +G LG G + PA +
Sbjct: 332 LESTEP----LNQIVAIDAGGFHSHAIKKDG-TVWSWGFNSNGELGLGHSKKQMYPAKI 385
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 37/185 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG--NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
++ + ++ G A+ + G ++ WG L D + + SPV +
Sbjct: 233 LTDVIAISTGEKQGYAVTSNGDVYGWGYNQGKLGDGTNKS--------RNSPVLIDGIYD 284
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRLRPKII-----E 112
V+ V G +H +AL ED ++WG N +GQLG G + P + E
Sbjct: 285 VIAVDSGKQHTLALK--------EDGTVWAWGTNTHGQLGYGTPVNYSMTPNQVFLESTE 336
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPE 172
NQ + + G FH+ + + W++G NG+LG G ++ + P
Sbjct: 337 PLNQ-----IVAIDAGGFHSHAIKK--------DGTVWSWGFNSNGELGLGHSKKQMYPA 383
Query: 173 QVKEL 177
+++ +
Sbjct: 384 KIETI 388
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 21/119 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSPVWDFHGHT--- 58
+ +V +G +LA+ G +W WG ++T G G+ +++ +P F T
Sbjct: 285 VIAVDSGKQHTLALKEDGTVWAWG------TNTHGQLGYGTPVNYSMTPNQVFLESTEPL 338
Query: 59 --VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
+V + G H A+ +D +SWG N+NG+LGLG + ++ P IET N
Sbjct: 339 NQIVAIDAGGFHSHAIK--------KDGTVWSWGFNSNGELGLGHSKKQMYPAKIETIN 389
>gi|440907021|gb|ELR57214.1| Putative E3 ubiquitin-protein ligase HERC1, partial [Bos grunniens
mutus]
Length = 4874
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 455 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 511
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 512 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 560
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 561 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 610
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 611 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 662
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V ++ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 663 ----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 707
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 708 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 760
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 761 SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVATSILG 814
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 815 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 844
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 127/285 (44%), Gaps = 38/285 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4096 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4152
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN-------QDSPWAVYEVT 126
S G+ + ++G + G+LGLG+ ++ P+ + +++ +V
Sbjct: 4153 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQARNNTLFFLQVA 4204
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSV 186
CG HT ++ SM W FG G+ G+LG G + + P++V L + + V
Sbjct: 4205 CGLNHTLAVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKV 4256
Query: 187 DCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 246
CG + ++ G V+++G ++ +GL P RN P+L G +D
Sbjct: 4257 ACGTQFSVALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED- 4307
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
VA GA HT+ + G +++WG G LG G T P +V
Sbjct: 4308 --VAVGAEHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4349
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 426 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 477
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 478 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 537
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 538 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 584
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 585 GGGDNGKLGHGDTNRVYKPKVI 606
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4253 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 4306
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4307 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4356
Query: 121 AVYEVTCGSFHTA 133
V +++ G H+A
Sbjct: 4357 -VRQISAGRCHSA 4368
>gi|355778100|gb|EHH63136.1| hypothetical protein EGM_16043 [Macaca fascicularis]
Length = 4862
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V V+ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDVSIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4094 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4150
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4151 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4199
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P+++ L + + V CG +
Sbjct: 4200 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCG-IGIKKVACGTQFS 4251
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4252 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GMIIED---VAVGA 4300
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + +G +++WG G LG G T P +V
Sbjct: 4301 EHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4337
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4241 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGMIIE 4294
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4295 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTGLQGKN-- 4344
Query: 121 AVYEVTCGSFHTA 133
+ +++ G H+A
Sbjct: 4345 -IRQISAGRCHSA 4356
>gi|188038845|gb|ACD47036.1| ASL1/Herc2 fusion protein [Mus musculus]
Length = 4746
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 116/242 (47%), Gaps = 38/242 (15%)
Query: 46 FTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 393 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDTV 444
Query: 104 SRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
PK+I F+ + + V + CGS ++A +T E +T+G G G+LGH
Sbjct: 445 PLEEPKVISAFSGKQAGKHVVHIACGSTYSAAIT--------AEGELYTWGRGNYGRLGH 496
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
G+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 497 GSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KLG 549
Query: 221 RNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
R + +P LI K Q D ++V CG+ ++ +T DG +++SWG+G + LG
Sbjct: 550 RGGSDGCKTPKLIE-------KLQDLDVIKVRCGSQFSIALTKDG-QVYSWGKGDNQRLG 601
Query: 279 TG 280
G
Sbjct: 602 HG 603
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 128/286 (44%), Gaps = 33/286 (11%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +A G
Sbjct: 2962 AVHSGGRHATALTVDGKVFSWGE---GDDGKLGHFSRMNCDKPRLIQALKTKRIRDIAYG 3018
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H L S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 3019 SSHSAPLTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 3067
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 3068 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL-NGQGVCQ 3120
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 3121 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 3170
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA GA H + VTD G ++++WG G G G T P +V
Sbjct: 3171 -VHVAVGALHCLAVTDSG-QVYAWGDNDHGQQGNGTTTVNRKPTLV 3214
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 3955 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 4011
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 4012 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VIDI 4060
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4061 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGV 4111
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4112 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4159
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4160 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4207
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 112/255 (43%), Gaps = 32/255 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S + ++G L+ WG L + G + P V GH V++V
Sbjct: 3011 RIRDIAYGSSHSAPLTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 3067
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 3068 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 3118
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 3119 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 3169
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ +G V++WG + G N + T N P L+ G +
Sbjct: 3170 IVHVAVGALHCLAVTDSGQVYAWG-DNDHGQQGNGTTTVNR-----KPTLV-----QGLE 3218
Query: 243 FQDPVQVACGAAHTV 257
Q +VACG++H+V
Sbjct: 3219 GQKITRVACGSSHSV 3233
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 129/296 (43%), Gaps = 55/296 (18%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSP--VWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G G + S P P + + V KVA
Sbjct: 2909 AGGSKSLFAVTVEGKVYSCGE------ATNGRLGLGMSSGTVPIPRQITALSSYVVKKVA 2962
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++I+
Sbjct: 2963 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIQALKTKR--- 3011
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ GS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3012 IRDIAYGSSHSAPLTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3062
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3063 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3113
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
NG Q Q+ CGA ++ +T G +W+WG+G LG G + P +V
Sbjct: 3114 NG------QGVCQIECGAQFSLALTKSGV-VWTWGKGDYFRLGHGSDVHVRKPQVV 3162
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 4004 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 4057
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4058 IDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4108
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4109 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4159
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4160 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4210
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4211 -QGKKVN---RVACGSAHTL 4226
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 3857 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 3913
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 3914 ADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 3964
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 3965 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 4015
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H + +ACG+
Sbjct: 4016 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVIDIACGS 4064
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4065 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4092
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + V+KV CGS+
Sbjct: 523 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQF 579
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 580 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 628
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H +LT E W G N Q H T PE P ++V +
Sbjct: 629 STHCLVLTEDS------EVHSW----GSNDQCQHFDTLGVTKPEPTA-FPGLDSKHIVGI 677
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 678 ACGPAQSFAWSSCSE-WSIGLR 698
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 428 YSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWG 487
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 488 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 535
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 536 QVWSWGDGDYGKLGRGGSDGCKTPKLI 562
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3867 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 3904
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3905 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 3963
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 3964 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 4010
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 4011 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4049
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 377 LSRNGRVYTQAYNSDMLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDG- 435
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G + E IS G H V +ACG+ ++ +T +G +L++WGR
Sbjct: 436 GRLGHGDTVPLEEPKVISAFSGKQAGKH------VVHIACGSTYSAAITAEG-ELYTWGR 488
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G + D P +V
Sbjct: 489 GNYGRLGHGSSEDEAIPMLV 508
>gi|426233168|ref|XP_004010589.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Ovis aries]
Length = 4856
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V ++ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4089 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4145
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4146 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4194
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4195 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4246
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4247 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 4295
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P +V
Sbjct: 4296 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4332
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4236 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 4289
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4290 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4339
Query: 121 AVYEVTCGSFHTA 133
V +++ G H+A
Sbjct: 4340 -VRQISAGRCHSA 4351
>gi|40018552|ref|NP_954515.1| RCC1 and BTB domain-containing protein 2 [Rattus norvegicus]
gi|81885332|sp|Q6P798.1|RCBT2_RAT RecName: Full=RCC1 and BTB domain-containing protein 2; AltName:
Full=Chromosome condensation 1-like; AltName:
Full=Regulator of chromosome condensation and BTB
domain-containing protein 2
gi|38197422|gb|AAH61766.1| Regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 2 [Rattus norvegicus]
gi|149049940|gb|EDM02264.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 2, isoform CRA_b [Rattus norvegicus]
Length = 551
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 115/250 (46%), Gaps = 31/250 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 85 STIEPRRLDSLTGKKIASLSYGSGPHIVLATTDGEVF--------TWGHNAYSQLGNGTT 136
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 137 NHGLVPCHIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 186
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q ++S+ CG + V G+V+ WG N L
Sbjct: 187 GSTANQPIPRRVTGCLQNKVVMSIACGQMCSMAVVDTGEVYVWGYNG------NGQLGLG 240
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 241 SSGNQPTPCRVAA--LQGIRVQ---RVACGYAHTLVLTDEG-QIYAWGANSYGQLGTGNK 294
Query: 283 IDFFAPAIVL 292
+ P V+
Sbjct: 295 SNQSYPTPVV 304
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 110/254 (43%), Gaps = 47/254 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 154 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQPIPRRVTGCLQNK 205
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + D E W G NGQLG G++ + P +V L
Sbjct: 206 --VVMSIACGQMCSMAVV------DTGEVYVW--GYNGNGQLGLGSSGNQPTPCRVAAL- 254
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILIS 234
Q + + V CG HT V++ G +++WG + G G N S +P+++
Sbjct: 255 QGIRVQRVACGYAHTLVLTDEGQIYAWGANSYGQLGTGNKSNQSYP--------TPVVVE 306
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDF 285
K + AC +AHT G ++ WG RG+S +L T
Sbjct: 307 -------KDRIIEIAACHSAHTSAAKSQGGHVYMWGQCRGQSVILPHLTHFCCTDDVFAC 359
Query: 286 FAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 360 FATPAVTWRLLSVE 373
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ S+ G M S+A+ + G +++WG + G L SS TP V G V
Sbjct: 207 VMSIACGQMCSMAVVDTGEVYVWG------YNGNGQLGLGSSGNQPTPCRVAALQGIRVQ 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 261 RVACGYAHTLVLTDEGQIY--------AWGANSYGQLGTGNKSNQSYP 300
>gi|383422561|gb|AFH34494.1| putative E3 ubiquitin-protein ligase HERC1 [Macaca mulatta]
Length = 4853
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V V+ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDVSIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4086 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4142
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4143 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4191
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P+++ L + + V CG +
Sbjct: 4192 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCG-IGIKKVACGTQFS 4243
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4244 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GMIIED---VAVGA 4292
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + +G +++WG G LG G T P +V
Sbjct: 4293 EHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4329
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG E
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWG-EG 538
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
G L ++ P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 539 DFG-----RLGHGDSNSRNIPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4233 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGMIIE 4286
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4287 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTGLQGKN-- 4336
Query: 121 AVYEVTCGSFHTA 133
V +++ G H+A
Sbjct: 4337 -VRQISAGRCHSA 4348
>gi|229442453|gb|AAI72909.1| guanine nucleotide exchange factor p532 [synthetic construct]
Length = 2440
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V V+ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDVSIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
>gi|255569912|ref|XP_002525919.1| Protein pim1, putative [Ricinus communis]
gi|223534748|gb|EEF36439.1| Protein pim1, putative [Ricinus communis]
Length = 478
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 118/252 (46%), Gaps = 44/252 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQ- 116
+ +V+CG+ HVVAL ED + +WG N GQLG G L+ P++I + +
Sbjct: 169 ICQVSCGAVHVVAL--------SEDGLLQAWGYNEYGQLGRGITCEGLQGPRVINAYAKF 220
Query: 117 --DSPWAV--YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA---L 169
++P V V+CG +HTA ++ + +T+GLG GQLGH + QS L
Sbjct: 221 LDEAPELVKITRVSCGEYHTAAISEKGE--------VYTWGLGSTGQLGHTSLQSGNKEL 272
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDA 227
+P +V L + + V CG HT V+ G +++WG + LGL P D
Sbjct: 273 LPRRVVALDG-ILITDVACGGVHTCAVTQKGALYAWGGSQFGQLGLGPQTGSFSFIPSDT 331
Query: 228 IS-----PILISGNGPHGPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
S P L+ F VQ VACG +HT++ DG ++ WG G K
Sbjct: 332 ESFLRNIPALV---------FPTGVQLVACGHSHTLICLRDG-RIHGWGYNSYGQAANEK 381
Query: 282 TIDFFAPAIVLW 293
T + P+ V W
Sbjct: 382 TTYAWYPSPVDW 393
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 116/306 (37%), Gaps = 95/306 (31%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ +ACG EH A+ S G + +WGAN GQLG G E + PK ++ +
Sbjct: 65 LDIACGREHTAAVASDGSLF--------TWGANEFGQLGDGTEEGKKYPKKVKQLETE-- 114
Query: 120 WAVYEVTCGSFHTALLTH-RKRPNDMLESMCWTFG------------------------- 153
V V+CG+ TA + R+ + S W +G
Sbjct: 115 -FVKSVSCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNYPRLFSGAFALNTIICQVS 173
Query: 154 -------------------LGENGQLGHGTTQSALVPEQV--------KELPQYVYLVSV 186
E GQLG G T L +V E P+ V + V
Sbjct: 174 CGAVHVVALSEDGLLQAWGYNEYGQLGRGITCEGLQGPRVINAYAKFLDEAPELVKITRV 233
Query: 187 DCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD---------AISPILISGNG 237
CG +HT+ +S G+V++W GLG T ++G+ A+ ILI+
Sbjct: 234 SCGEYHTAAISEKGEVYTW----GLGSTGQLGHTSLQSGNKELLPRRVVALDGILIT--- 286
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
VACG HT VT G L++WG + G LG G F+ P T
Sbjct: 287 ----------DVACGGVHTCAVTQKG-ALYAWGGSQFGQLGLGPQTGSFS----FIPSDT 331
Query: 298 EEFKQD 303
E F ++
Sbjct: 332 ESFLRN 337
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 95/214 (44%), Gaps = 47/214 (21%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKII--ETF----NQDSPWAVYEVTCGSFHTALLTHRK 139
Y WG N+NGQ G +E LR PK + E F ++ W ++ CG HTA +
Sbjct: 24 YVWGYNHNGQTGRKGKEQELRIPKQLSPELFGCPAGANARW--LDIACGREHTAAVAS-- 79
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS-- 197
+ +T+G E GQLG GT + P++VK+L + ++ SV CG T+ ++
Sbjct: 80 ------DGSLFTWGANEFGQLGDGTEEGKKYPKKVKQL-ETEFVKSVSCGAHCTAAIAEP 132
Query: 198 -------SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
S +W WG +G + P L SG QV+
Sbjct: 133 RENDGTISTSRLWVWGQNQG----------------SNYPRLFSGAFALNTII---CQVS 173
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
CGA H V +++DG L +WG G LG G T +
Sbjct: 174 CGAVHVVALSEDGL-LQAWGYNEYGQLGRGITCE 206
>gi|225438323|ref|XP_002273073.1| PREDICTED: E3 ubiquitin-protein ligase HERC2 [Vitis vinifera]
gi|296082630|emb|CBI21635.3| unnamed protein product [Vitis vinifera]
Length = 420
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 127/312 (40%), Gaps = 60/312 (19%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS---FTPSPVWDFHGHTV 59
+I + AG S AI G L+MWG +S+ + G ++ PS V +G ++
Sbjct: 119 KIIHIAAGYYHSAAITADGELYMWGK----NSNGQLGLGKKAANAVSVPSKVECLNGISI 174
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL---------RPKI 110
VA GSEH VA GE SWGA +G+LG G S L RP++
Sbjct: 175 KMVALGSEHSVAATDQGEAL--------SWGAGGSGRLGHGHESSLLGFFRTSSEYRPRL 226
Query: 111 IETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALV 170
I V V G H+A + + FG + G ++A
Sbjct: 227 IRRLEGIK---VKNVAAGLLHSACIDE--------NGSVFIFGERAMDKFGFREAKNATA 275
Query: 171 PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP 230
P + ELP Y V CG +HT V+SS+G++++WG + N L P
Sbjct: 276 PSMISELP---YSKQVACGGYHTCVISSSGELFTWGSNE------NGCLGMGFMETIHFP 326
Query: 231 ILISGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWSW----------GRGRSGVLGT 279
I GP ++PV QV+CG HT +++ W W G G LG
Sbjct: 327 ERI-----EGPFSKNPVSQVSCGWKHTAAISEGNVFTWGWGGSYGTFSDDGHSSGGQLGQ 381
Query: 280 GKTIDFFAPAIV 291
G +D P +V
Sbjct: 382 GSDVDHIKPKMV 393
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 37/222 (16%)
Query: 89 WGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESM 148
WG + G+LGLG ES+ RP + F+ S + + CG HT LT ES
Sbjct: 38 WGNGDFGRLGLGSLESQWRPAVCSAFDHHS---LVAIACGGAHTLFLT---------ESG 85
Query: 149 C-WTFGLGENGQLGHGTTQSALV-PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
C + GL + GQLG ++ P +V LP+ + + + G +H++ +++ G+++ WG
Sbjct: 86 CVYAAGLNDFGQLGVSVDKNYTTEPLEVSALPKKI--IHIAAGYYHSAAITADGELYMWG 143
Query: 207 MEK----GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
GLG +++ + ++ I I VA G+ H+V TD
Sbjct: 144 KNSNGQLGLGKKAANAVSVPSKVECLNGISIK-------------MVALGSEHSVAATDQ 190
Query: 263 GYKLWSWGRGRSGVLGTG---KTIDFFAPAIVLWPPLTEEFK 301
G L SWG G SG LG G + FF + P L +
Sbjct: 191 GEAL-SWGAGGSGRLGHGHESSLLGFFRTSSEYRPRLIRRLE 231
Score = 38.1 bits (87), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
V GG + I ++G L+ WG+ + GF F F + V +V+CG
Sbjct: 288 VACGGYHTCVISSSGELFTWGSNE--NGCLGMGFMETIHFPERIEGPFSKNPVSQVSCGW 345
Query: 67 EHVVALVSAGETYK---GEDLVCYSW-GANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+H A +S G + G +S G ++ GQLG G ++PK++E ++S A+
Sbjct: 346 KHTAA-ISEGNVFTWGWGGSYGTFSDDGHSSGGQLGQGSDVDHIKPKMVEF--EESVRAL 402
Query: 123 YEVTCGSFHTALL 135
+V+CG HT +
Sbjct: 403 -QVSCGFNHTGAI 414
>gi|114595105|ref|XP_001160851.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 isoform 2
[Pan troglodytes]
Length = 1020
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 116/246 (47%), Gaps = 31/246 (12%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRL 106
P P+ TV V+CG EH +A+ G ++WGA + GQLG+G+ +E
Sbjct: 66 PEPIQALETLTVDLVSCGKEHSLAVCHKGRV--------FAWGAGSEGQLGIGEFKEISF 117
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT- 165
PK I T N + +V+CG +H+ L+ +S +++G +GQLG G
Sbjct: 118 TPKKITTLNG---IKIIQVSCGHYHSLALSK--------DSQVFSWGKNSHGQLGLGKEF 166
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
S P++V+ L + + L V G H+ +S G + WG L A RN
Sbjct: 167 PSQASPQRVRSL-EGIPLAQVAAGGAHSFALSLCGTSFGWGSNSSGQL---ALSGRNVPV 222
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ P+ + G V ++CG AHT ++T DG K++++G RSG LG T +
Sbjct: 223 QSNKPLSVGALKNLG-----VVYISCGDAHTAVLTQDG-KVFTFGDNRSGQLGYSPTPEK 276
Query: 286 FAPAIV 291
P +V
Sbjct: 277 RGPQLV 282
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 124/286 (43%), Gaps = 66/286 (23%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHTVVKV 62
V G SLA+ + G ++ WG + +EG + SFTP + +G +++V
Sbjct: 80 VSCGKEHSLAVCHKGRVFAWG------AGSEGQLGIGEFKEISFTPKKITTLNGIKIIQV 133
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWA 121
+CG H +AL +D +SWG N++GQLGLG S+ P+ + + + P A
Sbjct: 134 SCGHYHSLAL--------SKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSL-EGIPLA 184
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWT-FGLGEN--GQL---GHGTTQSALVPEQVK 175
+V G H+ L S+C T FG G N GQL G + P V
Sbjct: 185 --QVAAGGAHSFAL-----------SLCGTSFGWGSNSSGQLALSGRNVPVQSNKPLSVG 231
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILI 233
L + + +V + CG HT+V++ G V+++G + LG P
Sbjct: 232 AL-KNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPE--------------- 275
Query: 234 SGNGPHGPKFQDPV-----QVACGAAHTVLVTDDGYKLWSWGRGRS 274
GP+ + + Q+ CG+ HT+ ++ S+G G S
Sbjct: 276 ----KRGPQLVERIDGLVSQIDCGSYHTLAYVHTTGQVVSFGHGPS 317
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 12/134 (8%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ G + WG+ + G V S P V VV ++
Sbjct: 183 LAQVAAGGAHSFALSLCGTSFGWGSNSSGQLALSGRNVPVQSNKPLSVGALKNLGVVYIS 242
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H L G+ +++G N +GQLG + P+++E + V
Sbjct: 243 CGDAHTAVLTQDGKV--------FTFGDNRSGQLGYSPTPEKRGPQLVERID----GLVS 290
Query: 124 EVTCGSFHTALLTH 137
++ CGS+HT H
Sbjct: 291 QIDCGSYHTLAYVH 304
>gi|410211612|gb|JAA03025.1| hect domain and RLD 6 [Pan troglodytes]
Length = 1020
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 116/246 (47%), Gaps = 31/246 (12%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRL 106
P P+ TV V+CG EH +A+ G ++WGA + GQLG+G+ +E
Sbjct: 66 PEPIQALETLTVDLVSCGKEHSLAVCHKGRV--------FAWGAGSEGQLGIGEFKEISF 117
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT- 165
PK I T N + +V+CG +H+ L+ +S +++G +GQLG G
Sbjct: 118 TPKKITTLNG---IKIIQVSCGHYHSLALSK--------DSQVFSWGKNSHGQLGLGKEF 166
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
S P++V+ L + + L V G H+ +S G + WG L A RN
Sbjct: 167 PSQASPQRVRSL-EGIPLAQVAAGGAHSFALSLCGTSFGWGSNSSGQL---ALSGRNVPV 222
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ P+ + G V ++CG AHT ++T DG K++++G RSG LG T +
Sbjct: 223 QSNKPLSVGALKNLG-----VVYISCGDAHTAVLTQDG-KVFTFGDNRSGQLGYSPTPEK 276
Query: 286 FAPAIV 291
P +V
Sbjct: 277 RGPQLV 282
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 124/286 (43%), Gaps = 66/286 (23%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHTVVKV 62
V G SLA+ + G ++ WG + +EG + SFTP + +G +++V
Sbjct: 80 VSCGKEHSLAVCHKGRVFAWG------AGSEGQLGIGEFKEISFTPKKITTLNGIKIIQV 133
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWA 121
+CG H +AL +D +SWG N++GQLGLG S+ P+ + + + P A
Sbjct: 134 SCGHYHSLAL--------SKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSL-EGIPLA 184
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWT-FGLGEN--GQL---GHGTTQSALVPEQVK 175
+V G H+ L S+C T FG G N GQL G + P V
Sbjct: 185 --QVAAGGAHSFAL-----------SLCGTSFGWGSNSSGQLALSGRNVPVQSNKPLSVG 231
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILI 233
L + + +V + CG HT+V++ G V+++G + LG P
Sbjct: 232 AL-KNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPE--------------- 275
Query: 234 SGNGPHGPKFQDPV-----QVACGAAHTVLVTDDGYKLWSWGRGRS 274
GP+ + + Q+ CG+ HT+ ++ S+G G S
Sbjct: 276 ----KRGPQLVERIDGLVSQIDCGSYHTLAYVHTTGQVVSFGHGPS 317
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 12/134 (8%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ G + WG+ + G V S P V VV ++
Sbjct: 183 LAQVAAGGAHSFALSLCGTSFGWGSNSSGQLALSGRNVPVQSNKPLSVGALKNLGVVYIS 242
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H L G+ +++G N +GQLG + P+++E + V
Sbjct: 243 CGDAHTAVLTQDGKV--------FTFGDNRSGQLGYSPTPEKRGPQLVERID----GLVS 290
Query: 124 EVTCGSFHTALLTH 137
++ CGS+HT H
Sbjct: 291 QIDCGSYHTLAYVH 304
>gi|291402886|ref|XP_002718216.1| PREDICTED: hect domain and RCC1-like domain 1 [Oryctolagus
cuniculus]
Length = 4860
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V ++ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4093 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4149
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4150 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4198
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4199 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4250
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4251 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQVPVLA------GVVIED---VAVGA 4299
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P +V
Sbjct: 4300 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4336
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P V G +
Sbjct: 4240 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQVPVLAGVVIE 4293
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4294 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4343
Query: 121 AVYEVTCGSFHTA 133
+ +++ G H+A
Sbjct: 4344 -IRQISAGRCHSA 4355
>gi|281209109|gb|EFA83284.1| regulator of chromosome condensation domain-containing protein
[Polysphondylium pallidum PN500]
Length = 853
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 111/229 (48%), Gaps = 29/229 (12%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+V ++ G + A+ S G Y+WG N GQLGLGDR P++I + + S
Sbjct: 232 IVDISAGWAYSAAVTSTGN--------VYTWGFNEKGQLGLGDRWYHGNPRVIRSLSNKS 283
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL- 177
+ + CG H A ++ + D+ +T+GLG GQLGHG +S L P++V
Sbjct: 284 ---IVNIACGRQHMAAIS---KSGDL-----YTWGLGVFGQLGHGKLKSLLHPKKVLYFE 332
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTR-NEAGDAISPILIS 234
Q +V V G T VS G+++S+G E G LG + N GD + S
Sbjct: 333 QQQKKIVQVATGANFTMAVSENGELFSFGHGEYGQLGATEDTQYMDWNNNGDRDDHLKYS 392
Query: 235 GNGPHGPKFQDPV---QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
P K + V +VACG HT+ VT D +++WG G SG LG G
Sbjct: 393 --LPKQVKALESVKVRKVACGHLHTIAVTTDN-DVYTWGWGSSGCLGFG 438
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 96/224 (42%), Gaps = 46/224 (20%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG-----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+I + AG S A+ + G ++ WG L D G P +
Sbjct: 231 KIVDISAGWAYSAAVTSTGNVYTWGFNEKGQLGLGDRWYHG--------NPRVIRSLSNK 282
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
++V +ACG +H+ A+ +G+ Y+WG GQLG G +S L PK + F Q
Sbjct: 283 SIVNIACGRQHMAAISKSGD--------LYTWGLGVFGQLGHGKLKSLLHPKKVLYFEQQ 334
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG------------HGTT 165
V T +F A+ + + ++FG GE GQLG +G
Sbjct: 335 QKKIVQVATGANFTMAVSENGE---------LFSFGHGEYGQLGATEDTQYMDWNNNGDR 385
Query: 166 QSAL---VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
L +P+QVK L + V + V CG HT V++ DV++WG
Sbjct: 386 DDHLKYSLPKQVKAL-ESVKVRKVACGHLHTIAVTTDNDVYTWG 428
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 120/327 (36%), Gaps = 67/327 (20%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G SLA+ G ++ WG G + P+ + +VKV
Sbjct: 35 RIKQIACGEAHSLAVTEFGDVYSWGRGK---EGELGHPQKAMTAPPALIKALEHERIVKV 91
Query: 63 ACGSEHVVALVSAGETYK-----------------------------GEDLVCYSWGANN 93
ACG+ H +AL G+ Y+ + +S
Sbjct: 92 ACGNYHSLALTDTGKVYQWGQLHEIDATKSGVKSQGGLVEMTGIKSFASKVADHSLSMYL 151
Query: 94 NGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFG 153
NG+ D ES + QD+P A VT P ++++
Sbjct: 152 NGEKAAYDEESASSSVL-----QDNPTANGLVTDDQEEEEEFL----PEAIVDTQQEQQP 202
Query: 154 LGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-L 211
++G ++ + P V + + +V + G +++ V+S G+V++WG EKG L
Sbjct: 203 EKSGSKVGEIVDKNQMTPVLVDFGSKSIKIVDISAGWAYSAAVTSTGNVYTWGFNEKGQL 262
Query: 212 GLCP-----NASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
GL N + R+ + +I V +ACG H ++ G L
Sbjct: 263 GLGDRWYHGNPRVIRSLSNKSI------------------VNIACGRQHMAAISKSG-DL 303
Query: 267 WSWGRGRSGVLGTGKTIDFFAPAIVLW 293
++WG G G LG GK P VL+
Sbjct: 304 YTWGLGVFGQLGHGKLKSLLHPKKVLY 330
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 87/210 (41%), Gaps = 34/210 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT--VVK 61
I ++ G AI +G L+ WG L G L S P V F +V+
Sbjct: 284 IVNIACGRQHMAAISKSGDLYTWG---LGVFGQLGHGKLKSLLHPKKVLYFEQQQKKIVQ 340
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL------------GDRESRLRPK 109
VA G+ +A+ GE +S+G GQLG GDR+ L+
Sbjct: 341 VATGANFTMAVSENGE--------LFSFGHGEYGQLGATEDTQYMDWNNNGDRDDHLKYS 392
Query: 110 IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
+ + V +V CG HT +T ND+ +T+G G +G LG G + L
Sbjct: 393 LPKQVKALESVKVRKVACGHLHTIAVT---TDNDV-----YTWGWGSSGCLGFGDRKFQL 444
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
VP++V L + SV G HT +V S+
Sbjct: 445 VPQRVPSLSGE-EISSVSGGEKHTLIVRSS 473
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 151 TFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG 210
+FG+G+ GQLG + L P V +L + + + CG H+ V+ GDV+SWG K
Sbjct: 5 SFGVGKQGQLGLDVNKDQLDPA-VIQLLKGKRIKQIACGEAHSLAVTEFGDVYSWGRGK- 62
Query: 211 LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG 270
L + P LI + + V+VACG H++ +TD G K++ WG
Sbjct: 63 -----EGELGHPQKAMTAPPALIK-----ALEHERIVKVACGNYHSLALTDTG-KVYQWG 111
Query: 271 R------GRSGVLGTGKTID 284
+ +SGV G ++
Sbjct: 112 QLHEIDATKSGVKSQGGLVE 131
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 88 SWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLES 147
S+G GQLGL + +L P +I+ + ++ CG H+ +T
Sbjct: 5 SFGVGKQGQLGLDVNKDQLDPAVIQLLKGKR---IKQIACGEAHSLAVTEFGD------- 54
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGH P +K L ++ +V V CG +H+ ++ G V+ WG
Sbjct: 55 -VYSWGRGKEGELGHPQKAMTAPPALIKAL-EHERIVKVACGNYHSLALTDTGKVYQWG 111
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+ + G + ++ACG H +A+ G+ YSWG G+LG +
Sbjct: 25 PAVIQLLKGKRIKQIACGEAHSLAVTEFGD--------VYSWGRGKEGELGHPQKAMTAP 76
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLT 136
P +I+ + + +V CG++H+ LT
Sbjct: 77 PALIKALEHER---IVKVACGNYHSLALT 102
>gi|444910459|ref|ZP_21230644.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
gi|444719396|gb|ELW60193.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
Length = 693
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 124/291 (42%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ AG SLA+ G + WG + S G + +P V D VV
Sbjct: 395 LTDVVALSAGDSHSLALRTDGTVRAWG---VNYSGQLGDGTTTHRLSPVQVPDLT--DVV 449
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++ G H +AL + G ++WG+N++GQLG G RL P +
Sbjct: 450 ALSAGGNHTLALRTNG--------TVWAWGSNSDGQLGDGTTTPRLSPVQMLGLTN---- 497
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++ G +H +L H + W +G +GQLG GTT L P QV L
Sbjct: 498 -VVALSAGYYH-SLAVHT-------DGTVWAWGSNSDGQLGDGTTTHRLTPVQVPGLTDV 548
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
V L + D H+ + + G VW+WG L + R SP+ +
Sbjct: 549 VALSAGDS---HSLALRTDGTVWAWGSNSSSQLGDGTTTPRG------SPVQV------- 592
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P D V ++ G AH++ + DG +W+WG G LG G T P +V
Sbjct: 593 PGLTDVVALSAGGAHSLALRTDG-TVWAWGSNYYGQLGDGTTTPRLFPVLV 642
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 131/288 (45%), Gaps = 49/288 (17%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTP--SPVWDFHGHT-VVKVA 63
+ AG SLA+ G +W WG+ +SS + G + TP SPV G T VV ++
Sbjct: 1 MAAGYSHSLALHTDGTVWAWGS----NSSGQLGDG---TTTPRGSPV-QVPGLTDVVALS 52
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +AL + D ++WG+N++GQLG G RL + V
Sbjct: 53 AGNHHCLALRT--------DGTVWAWGSNSSGQLGDGTTTPRLSSVQVPGLTD-----VV 99
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
++ GS +T L + W +G GQLG GTT L P QV P +
Sbjct: 100 ALSAGSSYTLAL--------RTDGTVWAWGYNFYGQLGDGTTTPRLAPVQV---PGLTDV 148
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
V++ G++H+ + + G VW+WG + G + + TR +SP+ + P
Sbjct: 149 VALSSGIYHSLALRTDGTVWAWG-DNASGQLGDGTATRR-----LSPVQV-------PGL 195
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D V ++ G H++ V DG +W+WG SG LG G +P V
Sbjct: 196 TDVVALSAGGYHSLAVRTDG-TVWAWGSNFSGQLGDGTATPRLSPVQV 242
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 127/302 (42%), Gaps = 53/302 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + ++ AG LA+ G +W WG+ L D +T S V G
Sbjct: 45 LTDVVALSAGNHHCLALRTDGTVWAWGSNSSGQLGDGTTTPRLSSV---------QVPGL 95
Query: 58 T-VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
T VV ++ GS + +AL + D ++WG N GQLG G RL P +
Sbjct: 96 TDVVALSAGSSYTLALRT--------DGTVWAWGYNFYGQLGDGTTTPRLAPVQVPGLTD 147
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V ++ G +H+ L + W +G +GQLG GT L P QV
Sbjct: 148 -----VVALSSGIYHSLAL--------RTDGTVWAWGDNASGQLGDGTATRRLSPVQV-- 192
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
P +V++ G +H+ V + G VW+WG + L A +SP+ +SG
Sbjct: 193 -PGLTDVVALSAGGYHSLAVRTDGTVWAWGSNF------SGQLGDGTATPRLSPVQVSG- 244
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPL 296
+ V ++ ++T+ + DG +W+WG G LG G T +P V P L
Sbjct: 245 ------LTNVVALSADDSYTLALRTDG-TVWAWGYNSYGQLGDGTTTPRLSPVQV--PGL 295
Query: 297 TE 298
T
Sbjct: 296 TN 297
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 126/300 (42%), Gaps = 49/300 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ +G SLA+ G +W WG+ S G + +P V VV
Sbjct: 145 LTDVVALSSGIYHSLALRTDGTVWAWGDNA---SGQLGDGTATRRLSPVQVPGLT--DVV 199
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++ G H +A+ + D ++WG+N +GQLG G RL P +
Sbjct: 200 ALSAGGYHSLAVRT--------DGTVWAWGSNFSGQLGDGTATPRLSPVQVSGLTN---- 247
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V S+ AL T + W +G GQLG GTT L P QV P
Sbjct: 248 VVALSADDSYTLALRT---------DGTVWAWGYNSYGQLGDGTTTPRLSPVQV---PGL 295
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V++ G H+ + + G VW+WG + G+ I P S P
Sbjct: 296 TNVVALSAGYSHSLALRTDGTVWAWGYNY-----------NGQLGNGI-PTQRS---PSI 340
Query: 241 PKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTE 298
P F D V ++ G +H++ + DG +W+WG G LG G TI +P V P LT+
Sbjct: 341 PVFGLIDVVALSAGYSHSLALRTDG-TVWAWGYNSLGQLGDGTTIPRPSPVQV--PDLTD 397
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 123/286 (43%), Gaps = 55/286 (19%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTP--SPVWDFH 55
++ + ++ AG +LA+ G +W WG L D +T TP +PV
Sbjct: 95 LTDVVALSAGSSYTLALRTDGTVWAWGYNFYGQLGDGTT----------TPRLAPV-QVP 143
Query: 56 GHT-VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
G T VV ++ G H +AL + D ++WG N +GQLG G RL P +
Sbjct: 144 GLTDVVALSSGIYHSLALRT--------DGTVWAWGDNASGQLGDGTATRRLSPVQVPGL 195
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
V ++ G +H+ L R + W +G +GQLG GT L P QV
Sbjct: 196 TD-----VVALSAGGYHS--LAVRT------DGTVWAWGSNFSGQLGDGTATPRLSPVQV 242
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS 234
L V L + D +T + + G VW+WG L + R +SP+ +
Sbjct: 243 SGLTNVVALSADDS---YTLALRTDGTVWAWGYNSYGQLGDGTTTPR------LSPVQV- 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
P + V ++ G +H++ + DG +W+WG +G LG G
Sbjct: 293 ------PGLTNVVALSAGYSHSLALRTDG-TVWAWGYNYNGQLGNG 331
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 122/293 (41%), Gaps = 47/293 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTP--SPVWDFHGHT 58
++ + ++ AGG +LA+ G +W WG S+++G + TP SPV
Sbjct: 445 LTDVVALSAGGNHTLALRTNGTVWAWG------SNSDGQLG-DGTTTPRLSPVQMLGLTN 497
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV ++ G H +A+ + D ++WG+N++GQLG G RL P +
Sbjct: 498 VVALSAGYYHSLAVHT--------DGTVWAWGSNSDGQLGDGTTTHRLTPVQVPGLTD-- 547
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V ++ G H+ L + W +G + QLG GTT P QV P
Sbjct: 548 ---VVALSAGDSHSLAL--------RTDGTVWAWGSNSSSQLGDGTTTPRGSPVQV---P 593
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+V++ G H+ + + G VW+WG L + R + P+L+S
Sbjct: 594 GLTDVVALSAGGAHSLALRTDGTVWAWGSNYYGQLGDGTTTPR------LFPVLVS---- 643
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ GA H++ + DG +WG G LG G + F P V
Sbjct: 644 ---NLTGTSNLYAGAGHSLALRTDGTGR-AWGNNYGGQLGDGTSAFFLHPVQV 692
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 121/297 (40%), Gaps = 53/297 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTP--SPVWDFH 55
++ + ++ A +LA+ G +W WG L D +T TP SPV
Sbjct: 245 LTNVVALSADDSYTLALRTDGTVWAWGYNSYGQLGDGTT----------TPRLSPVQVPG 294
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
VV ++ G H +AL + D ++WG N NGQLG G R P I
Sbjct: 295 LTNVVALSAGYSHSLALRT--------DGTVWAWGYNYNGQLGNGIPTQR-SPSIPVFGL 345
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
D V ++ G H+ L + W +G GQLG GTT P QV
Sbjct: 346 ID----VVALSAGYSHSLAL--------RTDGTVWAWGYNSLGQLGDGTTIPRPSPVQVP 393
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
+L V L + D H+ + + G V +WG+ L + R +SP+ +
Sbjct: 394 DLTDVVALSAGDS---HSLALRTDGTVRAWGVNYSGQLGDGTTTHR------LSPVQV-- 442
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
P D V ++ G HT+ + +G +W+WG G LG G T +P +L
Sbjct: 443 -----PDLTDVVALSAGGNHTLALRTNG-TVWAWGSNSDGQLGDGTTTPRLSPVQML 493
>gi|114595107|ref|XP_001160807.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 isoform 1
[Pan troglodytes]
Length = 984
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 116/246 (47%), Gaps = 31/246 (12%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRL 106
P P+ TV V+CG EH +A+ G ++WGA + GQLG+G+ +E
Sbjct: 66 PEPIQALETLTVDLVSCGKEHSLAVCHKGRV--------FAWGAGSEGQLGIGEFKEISF 117
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT- 165
PK I T N + +V+CG +H+ L+ +S +++G +GQLG G
Sbjct: 118 TPKKITTLNG---IKIIQVSCGHYHSLALSK--------DSQVFSWGKNSHGQLGLGKEF 166
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
S P++V+ L + + L V G H+ +S G + WG L A RN
Sbjct: 167 PSQASPQRVRSL-EGIPLAQVAAGGAHSFALSLCGTSFGWGSNSSGQL---ALSGRNVPV 222
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ P+ + G V ++CG AHT ++T DG K++++G RSG LG T +
Sbjct: 223 QSNKPLSVGALKNLG-----VVYISCGDAHTAVLTQDG-KVFTFGDNRSGQLGYSPTPEK 276
Query: 286 FAPAIV 291
P +V
Sbjct: 277 RGPQLV 282
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 124/286 (43%), Gaps = 66/286 (23%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHTVVKV 62
V G SLA+ + G ++ WG + +EG + SFTP + +G +++V
Sbjct: 80 VSCGKEHSLAVCHKGRVFAWG------AGSEGQLGIGEFKEISFTPKKITTLNGIKIIQV 133
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWA 121
+CG H +AL +D +SWG N++GQLGLG S+ P+ + + + P A
Sbjct: 134 SCGHYHSLAL--------SKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSL-EGIPLA 184
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWT-FGLGEN--GQL---GHGTTQSALVPEQVK 175
+V G H+ L S+C T FG G N GQL G + P V
Sbjct: 185 --QVAAGGAHSFAL-----------SLCGTSFGWGSNSSGQLALSGRNVPVQSNKPLSVG 231
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILI 233
L + + +V + CG HT+V++ G V+++G + LG P
Sbjct: 232 AL-KNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPE--------------- 275
Query: 234 SGNGPHGPKFQDPV-----QVACGAAHTVLVTDDGYKLWSWGRGRS 274
GP+ + + Q+ CG+ HT+ ++ S+G G S
Sbjct: 276 ----KRGPQLVERIDGLVSQIDCGSYHTLAYVHTTGQVVSFGHGPS 317
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 12/134 (8%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ G + WG+ + G V S P V VV ++
Sbjct: 183 LAQVAAGGAHSFALSLCGTSFGWGSNSSGQLALSGRNVPVQSNKPLSVGALKNLGVVYIS 242
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H L G+ +++G N +GQLG + P+++E + V
Sbjct: 243 CGDAHTAVLTQDGKV--------FTFGDNRSGQLGYSPTPEKRGPQLVERID----GLVS 290
Query: 124 EVTCGSFHTALLTH 137
++ CGS+HT H
Sbjct: 291 QIDCGSYHTLAYVH 304
>gi|354584103|ref|ZP_09003000.1| Listeria/Bacterioides repeat-containing protein [Paenibacillus
lactis 154]
gi|353197365|gb|EHB62858.1| Listeria/Bacterioides repeat-containing protein [Paenibacillus
lactis 154]
Length = 1286
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 101/232 (43%), Gaps = 39/232 (16%)
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
K+ G H +LVS+GE YSWG + GQLG G +R P + + N
Sbjct: 37 KLVAGYYHTASLVSSGE--------VYSWGYGDRGQLGNGTWSARTTPVMAKGLNH---- 84
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V +V G T L + WT+G ENGQLG GT VP QV L
Sbjct: 85 -VIDVHTGVRSTMALRS--------DGTVWTWGSNENGQLGIGTVTDMNVPGQVSGLSG- 134
Query: 181 VYLVSVDCGL-FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ +V GL +H+ +S G VW+WG L +L +N +P+ ++G
Sbjct: 135 --IKAVSGGLGYHSMALSEDGSVWTWGKNDNGELGNGTTLQQN------TPVQVAG---- 182
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D +A G ++ + DG +W+WG G LG G T D + P V
Sbjct: 183 ---LNDVTAIAAGGYFSLALKSDG-TVWAWGVNGDGELGDGTTTDRYVPVQV 230
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 125/293 (42%), Gaps = 48/293 (16%)
Query: 1 MSQICSVKAG-GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+S I +V G G S+A+ G++W WG D+ G + + TP V + V
Sbjct: 132 LSGIKAVSGGLGYHSMALSEDGSVWTWGKN---DNGELGNGTTLQQNTPVQVAGLN--DV 186
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+A G +AL S G ++WG N +G+LG G R P +
Sbjct: 187 TAIAAGGYFSLALKSDG--------TVWAWGVNGDGELGDGTTTDRYVPVQVAGLTD--- 235
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V + G H+ +T + W +G G LG GT + P Q+K L
Sbjct: 236 --VMAIAAGGSHSLAVTQ--------DGTVWAWGKNTYGTLGDGTRTNRTRPVQIKNLQ- 284
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++V+V G +H+ + G+VWSWG ++ LG+ NAS ++ P+ +SG
Sbjct: 285 --HIVAVAGGGYHSLALDRTGNVWSWGDNSQRQLGVGSNAS--------SLIPVPVSG-- 332
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ ++A G H+V + DG +W WG G LG G + P +
Sbjct: 333 -----IEHVREIAAGGFHSVAMKKDG-TVWGWGFNGGGQLGDGTSSTRDTPTL 379
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 112/292 (38%), Gaps = 44/292 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT-PSPVWDFHGHTV 59
++ + V G ++A+ + G +W WG+ + + + G V+ P V G
Sbjct: 82 LNHVIDVHTGVRSTMALRSDGTVWTWGS----NENGQLGIGTVTDMNVPGQVSGLSGIKA 137
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V G H +AL ED ++WG N+NG+LG G + P + N
Sbjct: 138 VSGGLG-YHSMAL--------SEDGSVWTWGKNDNGELGNGTTLQQNTPVQVAGLND--- 185
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V + G + + L + W +G+ +G+LG GTT VP QV L
Sbjct: 186 --VTAIAAGGYFSLALKS--------DGTVWAWGVNGDGELGDGTTTDRYVPVQVAGLTD 235
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
++++ G H+ V+ G VW+WG L R P+ I
Sbjct: 236 ---VMAIAAGGSHSLAVTQDGTVWAWGKNTYGTLGDGTRTNRTR------PVQIK----- 281
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
Q V VA G H+ L D +WSWG LG G P V
Sbjct: 282 --NLQHIVAVAGGGYHS-LALDRTGNVWSWGDNSQRQLGVGSNASSLIPVPV 330
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 26/177 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ AGG SLA+ G +W WG T G + + P + + +V
Sbjct: 233 LTDVMAIAAGGSHSLAVTQDGTVWAWGKNTY---GTLGDGTRTNRTRPVQIKNLQ--HIV 287
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H +AL G +SWG N+ QLG+G S L P +
Sbjct: 288 AVAGGGYHSLALDRTGN--------VWSWGDNSQRQLGVGSNASSLIPVPVSGIEH---- 335
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V E+ G FH+ + + W +G GQLG GT+ + P K +
Sbjct: 336 -VREIAAGGFHSVAMKK--------DGTVWGWGFNGGGQLGDGTSSTRDTPTLTKAV 383
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF-SLVSSFTPSPVWDFHGHTV 59
+ I +V GG SLA+D G +W WG+ +S + G S SS P PV V
Sbjct: 283 LQHIVAVAGGGYHSLALDRTGNVWSWGD----NSQRQLGVGSNASSLIPVPVSGI--EHV 336
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++A G H VA+ +D + WG N GQLG G +R P + + +P
Sbjct: 337 REIAAGGFHSVAM--------KKDGTVWGWGFNGGGQLGDGTSSTRDTPTLTKAVLDTTP 388
>gi|401413264|ref|XP_003886079.1| hypothetical protein NCLIV_064790 [Neospora caninum Liverpool]
gi|325120499|emb|CBZ56053.1| hypothetical protein NCLIV_064790 [Neospora caninum Liverpool]
Length = 1765
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 122/270 (45%), Gaps = 54/270 (20%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQ 116
+V +VA G H + + KG+ +WG N N LGLG + R+ P ++ F++
Sbjct: 47 SVKRVALGLYHTLVV-----GLKGDQPQLLAWGKNYNNVLGLGVETRERVFPGLVPFFSR 101
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA-------- 168
V+EV+CG+ ++A+L R + + +TFGLG G+LG+ +++
Sbjct: 102 H---GVFEVSCGTNNSAVLVKRAQQSG---GKVYTFGLGNRGRLGYPKSKAEGGARQQGD 155
Query: 169 ------------LVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCP 215
P+ + + + CG HT +S G +++WG+
Sbjct: 156 DAGDGQEDGPSWFTPKPARVRFRDKCKIARISCGADHTLALSDGGALYAWGVGS------ 209
Query: 216 NASLTRNEAGDAISPILI-----SGNGPH------GPKFQDPVQVAC---GAAHTVLVTD 261
+L + + DA SP+ + G+G G + DPV V C GA H++ T
Sbjct: 210 YGNLGQGDTSDAYSPVRVLLGSEKGSGKKKENLGIGRRGTDPVVVTCCAAGAKHSMACTS 269
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
DG LW+WG G +G LG G +PA+V
Sbjct: 270 DG-TLWTWGHGGNGRLGLGHNRGSLSPAVV 298
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 137/306 (44%), Gaps = 61/306 (19%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL---VSSFTPSPV-WDFHGHTVVK 61
S+ G ++A+ GA+W+WG S+ EG L V PV D + +
Sbjct: 505 SLGCGENHTVALTGTGAVWVWG------SNDEGQLGLGEQVEEDQYEPVKLDCFSTPIRR 558
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ACGS+H +A+ G+ + +WGAN++GQLGLG P + Q
Sbjct: 559 IACGSKHCLAVAQYGDVF--------AWGANDDGQLGLGVLRPSFEPAAVTALRQ----- 605
Query: 122 VYEVTCGSFHTALLTHRKRPNDM---LESMC-----WTFGLGENGQLGHG---TTQSALV 170
+V CG ++A +T + LES WT+G E+G+LG G + S L
Sbjct: 606 AIDVFCGDDYSACITSNGGAQTVSLALESGTEFGDLWTWGAAESGKLGLGEDVASGSILT 665
Query: 171 PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGD 226
P++V P V + + G H +++ G+ ++WG G+G N
Sbjct: 666 PQKV---PFSVPVCACSLGTSHALAITARGECYAWGAGYYGRLGIGTTAN---------- 712
Query: 227 AISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFF 286
A +P + P G + + VA GA+H++ ++ DG LW WG+ T T ++
Sbjct: 713 AYAP--TKCDFPKGVRIR---SVAAGASHSLALSMDG-DLWIWGKKED----TCSTTNYN 762
Query: 287 APAIVL 292
+P I +
Sbjct: 763 SPRIFM 768
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 130/335 (38%), Gaps = 87/335 (25%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF------TPSPVWDFHGH 57
+ V AG S ID G L+ WG+ GGF + P V F G
Sbjct: 306 VVFVSAGDSHSACIDRQGVLYTWGS---------GGFGRLGHGDQGEIPVPRKVEGFGGV 356
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V++VACG+ H +AL T+KG ++WGA LG G+ + + + D
Sbjct: 357 PVLQVACGTFHTLAL-----THKG---TVFAWGAGLALGLGEGEDGGGGMVTVPKHLS-D 407
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
AV V G +H+A +T D+L +G+G + +LGHG Q+ P+ V +L
Sbjct: 408 IEVAVLNVAAGPYHSAAVT---VGGDLL-----VWGVGGSSRLGHGDQQNQPFPKYVADL 459
Query: 178 PQYVY--------------------------------------LVSVDCGLFHTSVVSSA 199
+Y L S+ CG HT ++
Sbjct: 460 RNRMYVADLQSMLGVSRLRRDYSDFDVLGESAGGAGANAAAWTLQSLGCGENHTVALTGT 519
Query: 200 GDVWSWGM--EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV-QVACGAAHT 256
G VW WG E LGL D P+ + F P+ ++ACG+ H
Sbjct: 520 GAVWVWGSNDEGQLGLGEQVE------EDQYEPVKLDC-------FSTPIRRIACGSKHC 566
Query: 257 VLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ V G +++WG G LG G F PA V
Sbjct: 567 LAVAQYG-DVFAWGANDDGQLGLGVLRPSFEPAAV 600
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 117/296 (39%), Gaps = 50/296 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWD------ 53
+I + G +LA+ + GAL+ WG L T +S V S
Sbjct: 182 KIARISCGADHTLALSDGGALYAWGVGSYGNLGQGDTSDAYSPVRVLLGSEKGSGKKKEN 241
Query: 54 ----FHGHTVVKVAC---GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
G V V C G++H +A S G ++WG NG+LGLG L
Sbjct: 242 LGIGRRGTDPVVVTCCAAGAKHSMACTSDG--------TLWTWGHGGNGRLGLGHNRGSL 293
Query: 107 RPKIIE-TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
P +++ ++D V V+ G H+A + + + +T+G G G+LGHG
Sbjct: 294 SPAVVDYILDRD----VVFVSAGDSHSACIDR--------QGVLYTWGSGGFGRLGHGDQ 341
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
VP +V+ V ++ V CG FHT ++ G V++WG A L
Sbjct: 342 GEIPVPRKVEGFGG-VPVLQVACGTFHTLALTHKGTVFAWG----------AGLALGLGE 390
Query: 226 DAISPILISGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ H + V VA G H+ VT G L WG G S LG G
Sbjct: 391 GEDGGGGMVTVPKHLSDIEVAVLNVAAGPYHSAAVTVGG-DLLVWGVGGSSRLGHG 445
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 120/302 (39%), Gaps = 54/302 (17%)
Query: 5 CSVKAGG--MMSLAIDNA---GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
C GG +SLA+++ G LW WG + S TP V +V
Sbjct: 618 CITSNGGAQTVSLALESGTEFGDLWTWGAAESGKLGLGEDVASGSILTPQKV----PFSV 673
Query: 60 VKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
AC G+ H +A+ + GE CY+WGA G+LG+G + P D
Sbjct: 674 PVCACSLGTSHALAITARGE--------CYAWGAGYYGRLGIGTTANAYAPT-----KCD 720
Query: 118 SPWAVY--EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQ 173
P V V G+ H+ L+ ++ W +G E+ + + + + E
Sbjct: 721 FPKGVRIRSVAAGASHSLALS--------MDGDLWIWGKKEDTCSTTNYNSPRIFMQLES 772
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
+P+ + S+ H+ V+ G+V++WG K + +A P +I
Sbjct: 773 PSGVPK---VKSIAAAEHHSLAVTETGEVFAWGDNK----LYQTGCGKRQAERLDRPEMI 825
Query: 234 SGNGPHGPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG--KTIDFFAPAI 290
+G + Q VA G + V G ++++ G G LGTG K FAPA
Sbjct: 826 AG-------LPNVCQWVATGPQASFFVLCSG-EVYAAGVINGGRLGTGWSKRKYQFAPAA 877
Query: 291 VL 292
VL
Sbjct: 878 VL 879
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 21/124 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
+I SV AG SLA+ G LW+WG C + ++ F + S + P
Sbjct: 726 RIRSVAAGASHSLALSMDGDLWIWGKKEDTCSTTNYNSPRIFMQLESPSGVP-------K 778
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES-RL-RPKIIETFNQ 116
V +A H +A+ GE ++WG N Q G G R++ RL RP++I
Sbjct: 779 VKSIAAAEHHSLAVTETGEV--------FAWGDNKLYQTGCGKRQAERLDRPEMIAGLPN 830
Query: 117 DSPW 120
W
Sbjct: 831 VCQW 834
>gi|431895932|gb|ELK05350.1| Putative E3 ubiquitin-protein ligase HERC1 [Pteropus alecto]
Length = 4850
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V ++ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4083 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4139
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4140 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4188
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4189 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4240
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4241 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 4289
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P +V
Sbjct: 4290 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4326
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4230 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 4283
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4284 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4333
Query: 121 AVYEVTCGSFHTA 133
V +++ G H+A
Sbjct: 4334 -VRQISAGRCHSA 4345
>gi|395822793|ref|XP_003784693.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Otolemur
garnettii]
Length = 4828
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V ++ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4061 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4117
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4118 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4166
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4167 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4218
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4219 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 4267
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + +G +++WG G LG G T P +V
Sbjct: 4268 EHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4304
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG E
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWG-EG 538
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
G L ++ P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 539 DFG-----RLGHGDSNSRNIPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4208 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 4261
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4262 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4311
Query: 121 AVYEVTCGSFHTALLTHRKRP 141
+ +++ G H+A T P
Sbjct: 4312 -IRQISAGRCHSAAWTAPPVP 4331
>gi|348550629|ref|XP_003461134.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cavia porcellus]
Length = 4725
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 116/243 (47%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 482 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 533
Query: 103 ESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F+ + V + CGS ++A +T E +T+G G G+LG
Sbjct: 534 LPLEEPKVISAFSGKQGGKHVVHIACGSTYSAAITA--------EGELYTWGRGNYGRLG 585
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG + G L
Sbjct: 586 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWG-DGDYG-----KL 638
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P LI K Q D ++V CG+ ++ +T DG +++SWG+G + L
Sbjct: 639 GRGGSDGCKTPKLIE-------KLQDLDVIKVRCGSQFSIALTKDG-QVYSWGKGDNQRL 690
Query: 278 GTG 280
G G
Sbjct: 691 GHG 693
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 3934 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 3990
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 3991 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEVLQGHR---VVDI 4039
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 4040 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGV 4090
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 4091 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 4138
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 4139 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 4186
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 3983 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEVLQGHRV 4036
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 4037 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 4087
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 4088 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 4138
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 4139 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 4189
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 4190 -QGKKVN---RVACGSAHTL 4205
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 120/274 (43%), Gaps = 55/274 (20%)
Query: 9 AGGMMSL-AIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSP--VWDFHGHTVVKVA 63
AGG SL A+ G ++ G +T G G L S P P + + V KVA
Sbjct: 2999 AGGSKSLFAVTVEGKVYACGE------ATNGRLGLGLSSGTVPIPRQITALSSYVVKKVA 3052
Query: 64 C--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
G H AL G+ + SWG ++G+LG R + +P++IE
Sbjct: 3053 VHSGGRHATALTVDGKVF--------SWGEGDDGKLGHFSRMNCDKPRLIEALKTKR--- 3101
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ ++ CGS H+A LT +T+GLGE G+LGHG + L P+ VK L +
Sbjct: 3102 IRDIACGSSHSAALTSSGE--------LYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH- 3152
Query: 182 YLVSVDCGL--FHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG T ++ G V+SWG + G G ++ +N +
Sbjct: 3153 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQN---------IERL 3203
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
NG Q Q+ CGA ++ +T G +W+W
Sbjct: 3204 NG------QGVCQIECGAQFSLALTKSGV-VWTW 3230
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 126/278 (45%), Gaps = 41/278 (14%)
Query: 8 KAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSE 67
KA G+ S A +++WG L D GG PS VV+VA GS+
Sbjct: 2948 KAAGLESAATIRT-KVFVWG---LNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSK 3003
Query: 68 HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVT 126
+ A+ G+ Y + G NG+LGLG + P+ I S + V +V
Sbjct: 3004 SLFAVTVEGKVY--------ACGEATNGRLGLGLSSGTVPIPRQITAL---SSYVVKKVA 3052
Query: 127 C--GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
G H LT ++ +++G G++G+LGH + + P ++ L + +
Sbjct: 3053 VHSGGRHATALT--------VDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEAL-KTKRIR 3103
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
+ CG H++ ++S+G++++WG+ + L + + P ++ H
Sbjct: 3104 DIACGSSHSAALTSSGELYTWGLGE------YGRLGHGDNTTQLKPKMVKVLLGH----- 3152
Query: 245 DPVQVACGA--AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+QVACG+ A T+ +TD+G ++SWG G G LG G
Sbjct: 3153 RVIQVACGSRDAQTLALTDEGL-VFSWGDGDFGKLGRG 3189
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P +++ G + + A+
Sbjct: 3836 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPIQLIGGEQTLFAVT 3892
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 3893 ADGK--------LYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 3943
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 3944 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 3994
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 3995 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEVLQGH-----RVVDIACGS 4043
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 4044 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 4071
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP + V+KV CGS+
Sbjct: 613 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQF 669
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
+AL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 670 SIALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 718
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T PE LP ++V +
Sbjct: 719 STHCLALTEDS------EVHSW----GSNDQCQHFDTLRVTKPEPTA-LPGLDTKHIVGI 767
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 768 ACGPAQSFAWSSCSE-WSIGLR 788
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV---YLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G G+ G+LGHG T P+ + ++V + CG +++ +++ G++++WG
Sbjct: 518 YSWGCGDGGRLGHGDTLPLEEPKVISAFSGKQGGKHVVHIACGSTYSAAITAEGELYTWG 577
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGY 264
L + D P+L++G G K D VACG+ A T+ VT++G
Sbjct: 578 RGN------YGRLGHGSSEDEAIPMLVAGL--KGLKVID---VACGSGDAQTLAVTENG- 625
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++WSWG G G LG G + P ++
Sbjct: 626 QVWSWGDGDYGKLGRGGSDGCKTPKLI 652
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 3846 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPIQLIG 3883
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 3884 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 3942
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 3943 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 3989
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 3990 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 4028
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 12/141 (8%)
Query: 154 LGENGQL-GHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
L NG++ L P+ V+ L + + ++ H +++ G+V+SWG G
Sbjct: 467 LSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGG 526
Query: 212 GLCPNASLTRNEAGDAISPILISG-NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG 270
L +L E P +IS +G G K V +ACG+ ++ +T +G +L++WG
Sbjct: 527 RLGHGDTLPLEE------PKVISAFSGKQGGKHV--VHIACGSTYSAAITAEG-ELYTWG 577
Query: 271 RGRSGVLGTGKTIDFFAPAIV 291
RG G LG G + D P +V
Sbjct: 578 RGNYGRLGHGSSEDEAIPMLV 598
>gi|302876126|ref|YP_003844759.1| chromosome condensation regulator RCC1 [Clostridium cellulovorans
743B]
gi|302578983|gb|ADL52995.1| regulator of chromosome condensation RCC1 [Clostridium
cellulovorans 743B]
Length = 852
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 123/290 (42%), Gaps = 49/290 (16%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
S +V AG ++A+ N G +W WG N L D +T +S +P V +G
Sbjct: 35 SGYIAVSAGNTTTIALKNDGTVWSWGFNQNGHLGDGTTS------NSNSPVQVKGLNG-- 86
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ ++ G H VAL S G ++WG +G+LG G R P I
Sbjct: 87 ITAISAGWAHFVALKSDG--------TVWTWGVGYSGELGDGTNSLRTTPAPINGLT--- 135
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ ++ G HT L + W++G + GQLG G T ++ +P QV P
Sbjct: 136 --GITAISAGWNHTLAL--------KADGTLWSWGQNQYGQLGTGNTTNSNIPLQV---P 182
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ + S+ G H+ V+ + G VWSWG G N + + N +P ISG
Sbjct: 183 GQIGITSISSGGGHSLVIKNDGTVWSWGCNN-FGQLGNGTNSNNP-----TPHQISG--- 233
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ V+ G H+ + DG +W+WG G L G ID + P
Sbjct: 234 ----LNGIINVSAGVIHSTALKSDG-TVWNWGCNFRGELANGNKIDSYIP 278
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 119/288 (41%), Gaps = 43/288 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ I ++ AG +A+ + G +W WG +G SL + TP+P+ G +
Sbjct: 84 LNGITAISAGWAHFVALKSDGTVWTWG-VGYSGELGDGTNSLRT--TPAPINGLTG--IT 138
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++ G H +AL + G +SWG N GQLG G+ + P
Sbjct: 139 AISAGWNHTLALKADG--------TLWSWGQNQYGQLGTGNTTNSNIP-----LQVPGQI 185
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ ++ G H+ ++ + + W++G GQLG+GT + P Q+ L
Sbjct: 186 GITSISSGGGHSLVIKN--------DGTVWSWGCNNFGQLGNGTNSNNPTPHQISGLNG- 236
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+++V G+ H++ + S G VW+WG L D+ P + NG +G
Sbjct: 237 --IINVSAGVIHSTALKSDGTVWNWGCNF------RGELANGNKIDSYIP--VQANGLNG 286
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ + G + + DG W WG G LG G D +P
Sbjct: 287 -----IIAITAGWEFSSAIKSDG-TFWVWGVNDYGQLGNGSKSDVTSP 328
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 110/291 (37%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ I ++ AG +LA+ G LW WG G + +S P V G T +
Sbjct: 134 LTGITAISAGWNHTLALKADGTLWSWGQNQYGQ---LGTGNTTNSNIPLQVPGQIGITSI 190
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
G V+ D +SWG NN GQLG G + P I N
Sbjct: 191 SSGGGHSLVIK----------NDGTVWSWGCNNFGQLGNGTNSNNPTPHQISGLN----- 235
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ V+ G H+ L + W +G G+L +G + +P Q L
Sbjct: 236 GIINVSAGVIHSTALKS--------DGTVWNWGCNFRGELANGNKIDSYIPVQANGLNG- 286
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++++ G +S + S G W WG+ G N S D SP+ +S
Sbjct: 287 --IIAITAGWEFSSAIKSDGTFWVWGVND-YGQLGNGS-----KSDVTSPMQVS------ 332
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ GA +TV + DG ++++G G LG G T P +V
Sbjct: 333 -SLSGITAIDTGATYTVALKTDG-NIFAFGENTYGQLGNGTTTGSTTPELV 381
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 30/183 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ I +V AG + S A+ + G +W WG C G + + S+ P +G ++
Sbjct: 234 LNGIINVSAGVIHSTALKSDGTVWNWG-CNFRGELANG--NKIDSYIPVQANGLNG--II 288
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+ G E A+ S G + WG N+ GQLG G + P + + +
Sbjct: 289 AITAGWEFSSAIKSDG--------TFWVWGVNDYGQLGNGSKSDVTSPMQVSSLS----- 335
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKELP 178
+ + G+ +T L K ++ F GEN GQLG+GTT + PE V
Sbjct: 336 GITAIDTGATYTVAL---KTDGNI-------FAFGENTYGQLGNGTTTGSTTPELVSIGD 385
Query: 179 QYV 181
YV
Sbjct: 386 TYV 388
>gi|307686853|ref|ZP_07629299.1| regulator of chromosome condensation RCC1 [Clostridium
cellulovorans 743B]
Length = 671
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 123/290 (42%), Gaps = 49/290 (16%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
S +V AG ++A+ N G +W WG N L D +T +S +P V +G
Sbjct: 35 SGYIAVSAGNTTTIALKNDGTVWSWGFNQNGHLGDGTTS------NSNSPVQVKGLNG-- 86
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ ++ G H VAL S G ++WG +G+LG G R P I
Sbjct: 87 ITAISAGWAHFVALKSDGT--------VWTWGVGYSGELGDGTNSLRTTPAPINGLT--- 135
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ ++ G HT L + W++G + GQLG G T ++ +P QV P
Sbjct: 136 --GITAISAGWNHTLAL--------KADGTLWSWGQNQYGQLGTGNTTNSNIPLQV---P 182
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ + S+ G H+ V+ + G VWSWG G N + + N +P ISG
Sbjct: 183 GQIGITSISSGGGHSLVIKNDGTVWSWGCNN-FGQLGNGTNSNNP-----TPHQISG--- 233
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ V+ G H+ + DG +W+WG G L G ID + P
Sbjct: 234 ----LNGIINVSAGVIHSTALKSDG-TVWNWGCNFRGELANGNKIDSYIP 278
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 120/288 (41%), Gaps = 43/288 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ I ++ AG +A+ + G +W WG +G SL + TP+P+ G +
Sbjct: 84 LNGITAISAGWAHFVALKSDGTVWTWG-VGYSGELGDGTNSLRT--TPAPINGLTG--IT 138
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++ G H +AL + G +SWG N GQLG G+ + P +
Sbjct: 139 AISAGWNHTLALKADG--------TLWSWGQNQYGQLGTGNTTNSNIPLQVP-----GQI 185
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ ++ G H+ ++ + + W++G GQLG+GT + P Q+ L
Sbjct: 186 GITSISSGGGHSLVIKN--------DGTVWSWGCNNFGQLGNGTNSNNPTPHQISGLNG- 236
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+++V G+ H++ + S G VW+WG L D+ P + NG +G
Sbjct: 237 --IINVSAGVIHSTALKSDGTVWNWGCNF------RGELANGNKIDSYIP--VQANGLNG 286
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ + G + + DG W WG G LG G D +P
Sbjct: 287 -----IIAITAGWEFSSAIKSDG-TFWVWGVNDYGQLGNGSKSDVTSP 328
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 110/291 (37%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ I ++ AG +LA+ G LW WG T + +S P V G T +
Sbjct: 134 LTGITAISAGWNHTLALKADGTLWSWGQNQYGQLGTG---NTTNSNIPLQVPGQIGITSI 190
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
G V+ D +SWG NN GQLG G + P I N
Sbjct: 191 SSGGGHSLVIK----------NDGTVWSWGCNNFGQLGNGTNSNNPTPHQISGLN----- 235
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ V+ G H+ L + W +G G+L +G + +P Q L
Sbjct: 236 GIINVSAGVIHSTALKS--------DGTVWNWGCNFRGELANGNKIDSYIPVQANGLNG- 286
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++++ G +S + S G W WG+ G N S D SP+ +S
Sbjct: 287 --IIAITAGWEFSSAIKSDGTFWVWGVND-YGQLGNGS-----KSDVTSPMQVS------ 332
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ GA +TV + DG ++++G G LG G T P +V
Sbjct: 333 -SLSGITAIDTGATYTVALKTDG-NIFAFGENTYGQLGNGTTTGSTTPELV 381
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 30/183 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ I +V AG + S A+ + G +W WG C G + + S+ P +G ++
Sbjct: 234 LNGIINVSAGVIHSTALKSDGTVWNWG-CNFRGELANG--NKIDSYIPVQANGLNG--II 288
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+ G E A+ S G + WG N+ GQLG G + P + + +
Sbjct: 289 AITAGWEFSSAIKSDGT--------FWVWGVNDYGQLGNGSKSDVTSPMQVSSLS----- 335
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKELP 178
+ + G+ +T L K ++ F GEN GQLG+GTT + PE V
Sbjct: 336 GITAIDTGATYTVAL---KTDGNI-------FAFGENTYGQLGNGTTTGSTTPELVSIGD 385
Query: 179 QYV 181
YV
Sbjct: 386 TYV 388
>gi|242014091|ref|XP_002427731.1| hect E3 ubiquitin ligase, putative [Pediculus humanus corporis]
gi|212512172|gb|EEB14993.1| hect E3 ubiquitin ligase, putative [Pediculus humanus corporis]
Length = 4834
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 130/291 (44%), Gaps = 41/291 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ G ++ WG D G + P + G +V +ACG
Sbjct: 4059 AVNSGGKHCLALSTDGKVYSWGE---GDDGKLGHGNKNGCDHPQLIDALQGKEIVDIACG 4115
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H A+ + GE Y +WG G+LG GD E +++PK++ET + V ++
Sbjct: 4116 GAHSAAVTAGGEIY--------TWGKGRYGRLGHGDSEDQMKPKLVETL---IGFKVIDI 4164
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L N W++G G+ G+LG G + +P +++ L + +V
Sbjct: 4165 ACGSGDAQTLCITDDDN------VWSWGDGDYGKLGRGGSDGCKIPMKIESLAG-LGVVK 4217
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + + + A+ G
Sbjct: 4218 VECGSQFSVALTRSGSVYTWG--KGDYHRLGHGSDEHVRHPKKIAAL----------QGK 4265
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
K + +A G+ H V +D G ++++WG G LG G P +V+
Sbjct: 4266 KI---ICIATGSLHCVACSDLG-EVFTWGDNDEGQLGDGTMNAIHRPRLVV 4312
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 131/291 (45%), Gaps = 41/291 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG + G + +S P + + +ACG
Sbjct: 3076 AVHSGGKHAMALTLDGKVFSWGE---GEDGKLGHDNRLSLDRPKMIEALKSKRIRDIACG 3132
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S GE ++WG G+LG GD ++LRPK+++ + +V
Sbjct: 3133 SSHSAAISSTGE--------LFTWGLGEYGRLGHGDNLTQLRPKLVKALLGHH---IVQV 3181
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P ++ L + +
Sbjct: 3182 ACGSRDAQTLALSA------EGLVFSWGDGDFGKLGRGGSEGCDIPHNIERL-NGLGVCM 3234
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + ++ G V++WG KG LG + + + +++S I
Sbjct: 3235 IECGAQFSLALTKFGQVYTWG--KGDYFRLGHGSDQHVRKPTLVESLSEKKI-------- 3284
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
V VA GA H + TD G ++++WG G G G + P++VL
Sbjct: 3285 -----VHVAVGALHCLCATDQG-QVYAWGDNDHGQQGNGTILVNRKPSLVL 3329
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 116/251 (46%), Gaps = 42/251 (16%)
Query: 48 PSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P + F G + K+A ++ H +AL G+ Y SWG + G+LG GD SR
Sbjct: 510 PEQIEGFDGKEISKLAAHADGKHSLALSCDGDVY--------SWGNGDGGRLGHGDNNSR 561
Query: 106 LRP-KIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
+P KI E ++ V ++CG+ ++A +T +T+G G G+LGHGT
Sbjct: 562 DQPTKITELVGKN----VIHISCGATYSAAVTSSGE--------VYTWGRGNYGRLGHGT 609
Query: 165 TQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
++ VP V L Y ++V + CG T V++ G V+SWG L
Sbjct: 610 SEDHTVPTLVVGLKDY-FIVDIACGSGDAQTLAVTNTGLVFSWGDGG------YGKLGTG 662
Query: 223 EAGDAISPILISGNGPHGPKFQD--PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ + +P LI K QD +V CG+ ++ +T G +++WG+G + LG G
Sbjct: 663 GSDGSKTPKLIE-------KLQDIEVARVYCGSQFSLALTKSG-SVYTWGKGDNHRLGHG 714
Query: 281 KTIDFFAPAIV 291
P +V
Sbjct: 715 SENHVRFPKLV 725
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 120/265 (45%), Gaps = 35/265 (13%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
D+ +++WG L D GG P + +A GS+ + +
Sbjct: 2982 DSPTKVFVWG---LNDKDQLGGLKGSKVKVPVYSESLTALKPIHIAGGSKSLFIV----- 3033
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
+Y G+ Y+ G NG+LGLG + P + + NQ V V G H LT
Sbjct: 3034 SYDGK---LYACGEGTNGRLGLGHSNNVATPCQLTSLNQYVIKKV-AVHSGGKHAMALT- 3088
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
L+ +++G GE+G+LGH S P+ ++ L + + + CG H++ +S
Sbjct: 3089 -------LDGKVFSWGEGEDGKLGHDNRLSLDRPKMIEAL-KSKRIRDIACGSSHSAAIS 3140
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AH 255
S G++++WG+ + L +LT+ + P L+ H VQVACG+ A
Sbjct: 3141 STGELFTWGLGEYGRLGHGDNLTQ------LRPKLVKALLGH-----HIVQVACGSRDAQ 3189
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTG 280
T+ ++ +G ++SWG G G LG G
Sbjct: 3190 TLALSAEGL-VFSWGDGDFGKLGRG 3213
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 96/248 (38%), Gaps = 63/248 (25%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+ A G SLA+ G ++ WGN D G S P+ + + G V+ ++CG
Sbjct: 525 AAHADGKHSLALSCDGDVYSWGN---GDGGRLGHGDNNSRDQPTKITELVGKNVIHISCG 581
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
+ + A+ S+GE Y +WG N G+LG G E P ++ + + ++
Sbjct: 582 ATYSAAVTSSGEVY--------TWGRGNYGRLGHGTSEDHTVPTLVVGLKD---YFIVDI 630
Query: 126 TCGS--------------------------------FHTALLTHRKRPNDMLESMC---- 149
CGS T L + + ++ C
Sbjct: 631 ACGSGDAQTLAVTNTGLVFSWGDGGYGKLGTGGSDGSKTPKLIEKLQDIEVARVYCGSQF 690
Query: 150 ----------WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSS 198
+T+G G+N +LGHG+ P+ V+ L + + V+V G H ++
Sbjct: 691 SLALTKSGSVYTWGKGDNHRLGHGSENHVRFPKLVEGLNGKCIKKVAVGSG--HVLALTD 748
Query: 199 AGDVWSWG 206
G+V+ WG
Sbjct: 749 DGEVYGWG 756
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G S+A+ +G+++ WG D G S P + G ++ +A
Sbjct: 4215 VVKVECGSQFSVALTRSGSVYTWGK---GDYHRLGHGSDEHVRHPKKIAALQGKKIICIA 4271
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H VA GE + +WG N+ GQLG G + RP+++ T + +
Sbjct: 4272 TGSLHCVACSDLGEVF--------TWGDNDEGQLGDGTMNAIHRPRLVVTLQGKN---IN 4320
Query: 124 EVTCGSFHT 132
V CGS H+
Sbjct: 4321 RVACGSAHS 4329
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 27/135 (20%)
Query: 165 TQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
T + L P ++ + Q++++ V+V+ G H +S+ G V+SWG
Sbjct: 4038 TDTILTPTLLESI-QHIFIKKVAVNSGGKHCLALSTDGKVYSWG---------------- 4080
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQ------VACGAAHTVLVTDDGYKLWSWGRGRSGV 276
GD + NG P+ D +Q +ACG AH+ VT G ++++WG+GR G
Sbjct: 4081 -EGDDGKLGHGNKNGCDHPQLIDALQGKEIVDIACGGAHSAAVTAGG-EIYTWGKGRYGR 4138
Query: 277 LGTGKTIDFFAPAIV 291
LG G + D P +V
Sbjct: 4139 LGHGDSEDQMKPKLV 4153
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G SLA+ +G+++ WG D+ G S P V +G + KV
Sbjct: 680 EVARVYCGSQFSLALTKSGSVYTWGK---GDNHRLGHGSENHVRFPKLVEGLNGKCIKKV 736
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A GS HV+AL GE Y WG N+NGQ+G + P ++ + +
Sbjct: 737 AVGSGHVLALTDDGEV--------YGWGRNDNGQVGETSETNVSEPTLLTLLQGKN---I 785
Query: 123 YEVTCG 128
++ CG
Sbjct: 786 VDIDCG 791
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
H+ +S GDV+SWG G L + +R++ L+ N H ++C
Sbjct: 532 HSLALSCDGDVYSWGNGDGGRLGHGDNNSRDQPTKITE--LVGKNVIH---------ISC 580
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
GA ++ VT G ++++WGRG G LG G + D P +V+
Sbjct: 581 GATYSAAVTSSG-EVYTWGRGNYGRLGHGTSEDHTVPTLVV 620
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 15/149 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+C ++ G SLA+ G ++ WG D G S P+ V +V VA
Sbjct: 3232 VCMIECGAQFSLALTKFGQVYTWGK---GDYFRLGHGSDQHVRKPTLVESLSEKKIVHVA 3288
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H + G+ Y+WG N++GQ G G +P ++ V
Sbjct: 3289 VGALHCLCATDQGQV--------YAWGDNDHGQQGNGTILVNRKPSLVLNLEG---VRVN 3337
Query: 124 EVTCGSFHT-ALLTHRKRPNDMLESMCWT 151
V CGS H+ A T +M E + +T
Sbjct: 3338 RVACGSSHSIAWTTSDTHAPNMTEPVLFT 3366
>gi|91202109|emb|CAJ75169.1| hypothetical protein kuste4407 [Candidatus Kuenenia
stuttgartiensis]
Length = 1590
Score = 89.7 bits (221), Expect = 3e-15, Method: Composition-based stats.
Identities = 65/231 (28%), Positives = 103/231 (44%), Gaps = 38/231 (16%)
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
K+A G+ H +AL S G ++WG N +GQLG ++R P + N
Sbjct: 566 KIAAGARHSLALKSNG--------TVWAWGNNGDGQLGDETTKNRTIPAQVSNVN----- 612
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
A+ + G+ H+ L + W +G +GQLG GT P Q+ L
Sbjct: 613 AITTIDGGASHSLALKS--------DGTVWVWGANWDGQLGDGTNTRKTTPVQISGLSD- 663
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++S+ CG++H+ + S G VW++G L ++ RN+ P+ +SG
Sbjct: 664 --IISIACGMYHSIALKSDGTVWAFGRNDYGQLGDGTNVYRNK------PVQVSG----- 710
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D + +A G H + + DG +W+WG SG LG G T + P V
Sbjct: 711 --LSDVIAIAGGDYHCLALKSDGI-VWAWGNNESGQLGDGTTTNRNTPVQV 758
Score = 89.4 bits (220), Expect = 3e-15, Method: Composition-based stats.
Identities = 77/285 (27%), Positives = 120/285 (42%), Gaps = 49/285 (17%)
Query: 7 VKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ AG SLA+ + G +W WGN L D +T+ + P+ V + + T +
Sbjct: 567 IAAGARHSLALKSNGTVWAWGNNGDGQLGDETTK------NRTIPAQVSNVNAITTID-- 618
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +AL S G + WGAN +GQLG G + P I + +
Sbjct: 619 GGASHSLALKSDG--------TVWVWGANWDGQLGDGTNTRKTTPVQISGLSD-----II 665
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
+ CG +H+ L + W FG + GQLG GT P QV L +
Sbjct: 666 SIACGMYHSIALKS--------DGTVWAFGRNDYGQLGDGTNVYRNKPVQVSGLSD---V 714
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+++ G +H + S G VW+WG + L + RN +P+ +S
Sbjct: 715 IAIAGGDYHCLALKSDGIVWAWGNNESGQLGDGTTTNRN------TPVQVS-------SI 761
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ +A G H++ + D +W+WG SG LG G T + P
Sbjct: 762 SNVAAIARGWVHSLALKSD-ETVWAWGSNGSGQLGDGTTTNRTTP 805
Score = 68.6 bits (166), Expect = 6e-09, Method: Composition-based stats.
Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 35/209 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ I ++ G SLA+ + G +W+WG + L D + ++ +PV
Sbjct: 611 VNAITTIDGGASHSLALKSDGTVWVWGANWDGQLGDGT--------NTRKTTPVQISGLS 662
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
++ +ACG H +AL S G +++G N+ GQLG G R +P + +
Sbjct: 663 DIISIACGMYHSIALKSDG--------TVWAFGRNDYGQLGDGTNVYRNKPVQVSGLSD- 713
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + G +H L + + W +G E+GQLG GTT + P QV +
Sbjct: 714 ----VIAIAGGDYHCLALKS--------DGIVWAWGNNESGQLGDGTTTNRNTPVQVSSI 761
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ ++ G H+ + S VW+WG
Sbjct: 762 SN---VAAIARGWVHSLALKSDETVWAWG 787
Score = 65.9 bits (159), Expect = 4e-08, Method: Composition-based stats.
Identities = 76/291 (26%), Positives = 116/291 (39%), Gaps = 38/291 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S I S+ G S+A+ + G +W +G D G + V P V V+
Sbjct: 661 LSDIISIACGMYHSIALKSDGTVWAFGR---NDYGQLGDGTNVYRNKPVQVSGLS--DVI 715
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +AL S G + ++WG N +GQLG G +R P + + +
Sbjct: 716 AIAGGDYHCLALKSDG--------IVWAWGNNESGQLGDGTTTNRNTPVQVSSISN---- 763
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G H+ L + W +G +GQLG GTT + P + +
Sbjct: 764 -VAAIARGWVHSLALKS--------DETVWAWGSNGSGQLGDGTTTNRTTPVNITNINNI 814
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ + +T + S G W+ G E G N + +P ++G
Sbjct: 815 IAIAGGG---GYTIALKSDGTGWTCG-EYGWDYSENNGSSYWGYSYRTTPDQVAG----- 865
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D V VA G H V++ DG +W+WG G LG G T D P V
Sbjct: 866 --INDVVAVAGGWQHIVVLKQDG-TVWTWGVNWYGQLGDGTTTDRDTPVQV 913
Score = 45.1 bits (105), Expect = 0.071, Method: Composition-based stats.
Identities = 60/247 (24%), Positives = 94/247 (38%), Gaps = 64/247 (25%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + ++ G LA+ + G +W WGN +S G + + TP V V
Sbjct: 711 LSDVIAIAGGDYHCLALKSDGIVWAWGN---NESGQLGDGTTTNRNTPVQVSSIS--NVA 765
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP------------ 108
+A G H +AL S D ++WG+N +GQLG G +R P
Sbjct: 766 AIARGWVHSLALKS--------DETVWAWGSNGSGQLGDGTTTNRTTPVNITNINNIIAI 817
Query: 109 -----KIIETFNQDSPWAV------YEVTCGSFHTALLTHRKRP------NDML------ 145
I + + W Y GS + ++R P ND++
Sbjct: 818 AGGGGYTIALKSDGTGWTCGEYGWDYSENNGSSYWGY-SYRTTPDQVAGINDVVAVAGGW 876
Query: 146 --------ESMCWTFGLGENGQLGHGTTQSALVPEQVK----ELPQYVY---LVSVDCGL 190
+ WT+G+ GQLG GTT P QV E+P +S++ G+
Sbjct: 877 QHIVVLKQDGTVWTWGVNWYGQLGDGTTTDRDTPVQVDINLGEMPDTFPPEGSISINSGV 936
Query: 191 FHTSVVS 197
+T+ S
Sbjct: 937 SYTNSTS 943
>gi|115373014|ref|ZP_01460317.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
gi|310821893|ref|YP_003954251.1| regulator of chromosome condensation [Stigmatella aurantiaca
DW4/3-1]
gi|115369926|gb|EAU68858.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
gi|309394965|gb|ADO72424.1| Regulator of chromosome condensation [Stigmatella aurantiaca
DW4/3-1]
Length = 864
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 124/294 (42%), Gaps = 40/294 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ I ++ AGG SLA+ G +W WG +S G L + + S DF V
Sbjct: 112 LPSIKAISAGGSYSLAVGADGKVWAWG---ANNSGQLGTGYLGNGKSGSEYADFQVTPVS 168
Query: 61 KVACGSEHVVALVSAGETYK---GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V G A VS G + +D ++WGAN GQLG G +RL P +
Sbjct: 169 IVIPGG---AAAVSGGLNHSLALAKDGKLWAWGANTYGQLGDGTTANRLAPVSVNI---- 221
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P + G +H+ + R W +G +GQ+G+G T + L P V
Sbjct: 222 -PGGAIAIAAGWYHSLAIARDGR--------VWAWGRNNSGQVGNGGTANQLTP-VVVAF 271
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P ++V G H+ VV S G VWSWG L ++ TR +SPI +
Sbjct: 272 PGSA--IAVAGGGSHSLVVLSNGTVWSWGANNAGQLGDGSNATR------VSPIQV---- 319
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P +VA G ++ +T DG +WSWG+ G LG G + P +
Sbjct: 320 ---PGIGVATKVAAGGYFSLAITSDG--VWSWGQNTRGQLGNGSLANSSVPVFI 368
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 42/245 (17%)
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+T V+ GS H + L S G +WG NN+GQLG G ++R P +
Sbjct: 63 NTQQGVSAGSYHSLLLRSTGAVL--------AWGQNNSGQLGDGSTQNRTLP--VNVLGL 112
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-----HGTTQSALVP 171
S A+ GS+ A+ K W +G +GQLG +G + S
Sbjct: 113 PSIKAISAG--GSYSLAVGADGK---------VWAWGANNSGQLGTGYLGNGKSGSEYAD 161
Query: 172 EQVKELPQYV--YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
QV + + +V GL H+ ++ G +W+WG L + R ++
Sbjct: 162 FQVTPVSIVIPGGAAAVSGGLNHSLALAKDGKLWAWGANTYGQLGDGTTANR------LA 215
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA 289
P+ + N P G + +A G H++ + DG ++W+WGR SG +G G T + P
Sbjct: 216 PVSV--NIPGGA-----IAIAAGWYHSLAIARDG-RVWAWGRNNSGQVGNGGTANQLTPV 267
Query: 290 IVLWP 294
+V +P
Sbjct: 268 VVAFP 272
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 76/206 (36%), Gaps = 49/206 (23%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
++ AG SLAI G +W WG +S G + TP V F G + + VA G
Sbjct: 227 AIAAGWYHSLAIARDGRVWAWGR---NNSGQVGNGGTANQLTPVVV-AFPG-SAIAVAGG 281
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE------------- 112
H + ++S G + SWGANN GQLG G +R+ P +
Sbjct: 282 GSHSLVVLSNGTVW--------SWGANNAGQLGDGSNATRVSPIQVPGIGVATKVAAGGY 333
Query: 113 ---TFNQDSPWAVYEVTCGSFHTALLTHRKRP------------------NDMLESMC-- 149
D W+ + T G L + P + +L C
Sbjct: 334 FSLAITSDGVWSWGQNTRGQLGNGSLANSSVPVFITATSNALALSGGYHHSLILRPGCPI 393
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVK 175
W +G GQLG GT L P Q +
Sbjct: 394 WAWGFNAYGQLGDGTLVDRLAPVQAE 419
>gi|209878252|ref|XP_002140567.1| regulator of chromosome condensation family protein
[Cryptosporidium muris RN66]
gi|209556173|gb|EEA06218.1| regulator of chromosome condensation family protein
[Cryptosporidium muris RN66]
Length = 477
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 124/285 (43%), Gaps = 39/285 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ + +V S AI G L+ WG + L S + TP V
Sbjct: 91 IKNVINVSCSDRHSAAILEDGRLYTWGCNKSGKLGIGSLNVNLNNNIICTPQLVEKLLNE 150
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+KV+CGS H L + Y +WG G+LG GD PK+IE+
Sbjct: 151 KVIKVSCGSFHTACLTDLNKAY--------TWGLGMQGRLGHGDTNDVYTPKLIESL--- 199
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ +V + CG HTA+L + + + G G G+LG G+ + +P+ ++
Sbjct: 200 AGLSVKNIVCGGHHTAILLNNGK--------VYFCGGGAFGKLGFGSKEDIYIPKLLQGS 251
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ V G H++V+++ G V++WG LG N D +SP L+
Sbjct: 252 LTNKSIKEVSLGYQHSAVITTKGKVYTWGQGGRLGHIYNGP-----EPDILSPKLVE--- 303
Query: 238 PHGPKFQD--PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
K V ++CG +HTV++++ G +++WG R+ LG G
Sbjct: 304 ----KLNSIIAVNISCGHSHTVVISNIG-DVYAWGVTRN--LGHG 341
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 134/301 (44%), Gaps = 49/301 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++I V GG S I ++G L +WG G L P + V+
Sbjct: 41 FNRIKEVCCGGHHSAVITHSGELIVWG---YGGCGQLGLGDLKDIVIPRVMTSIK--NVI 95
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD------RESRLRPKIIETF 114
V+C H A++ ED Y+WG N +G+LG+G P+++E
Sbjct: 96 NVSCSDRHSAAIL--------EDGRLYTWGCNKSGKLGIGSLNVNLNNNIICTPQLVEKL 147
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
+ V +V+CGSFHTA LT + +T+GLG G+LGHG T P+ +
Sbjct: 148 LNEK---VIKVSCGSFHTACLTDLNKA--------YTWGLGMQGRLGHGDTNDVYTPKLI 196
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG---DAISPI 231
+ L + + ++ CG HT+++ + G V+ C + + G D P
Sbjct: 197 ESLAG-LSVKNIVCGGHHTAILLNNGKVY---------FCGGGAFGKLGFGSKEDIYIPK 246
Query: 232 LISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR-GRSGVLGTGKTIDFFAPAI 290
L+ G+ + + +V+ G H+ ++T G K+++WG+ GR G + G D +P +
Sbjct: 247 LLQGSLTN----KSIKEVSLGYQHSAVITTKG-KVYTWGQGGRLGHIYNGPEPDILSPKL 301
Query: 291 V 291
V
Sbjct: 302 V 302
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 88 SWGANNNGQLGLGDRESRLRPKIIE---TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDM 144
+WG++ GQLG ES + PK+IE +FN+ + EV CG H+A++TH
Sbjct: 12 AWGSSEYGQLGAIYEESNIEPKLIESLYSFNR-----IKEVCCGGHHSAVITHSG----- 61
Query: 145 LESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
E + W G G GQLG G + ++P + + +++V C H++ + G +++
Sbjct: 62 -ELIVW--GYGGCGQLGLGDLKDIVIPRVMTSIKN---VINVSCSDRHSAAILEDGRLYT 115
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG K L + +P L+ + ++V+CG+ HT +TD
Sbjct: 116 WGCNKSGKLGIGSLNVNLNNNIICTPQLVE-----KLLNEKVIKVSCGSFHTACLTDLN- 169
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K ++WG G G LG G T D + P ++
Sbjct: 170 KAYTWGLGMQGRLGHGDTNDVYTPKLI 196
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 36/219 (16%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
+TP + G +V + CG H L++ G+ Y C G G+LG G +E
Sbjct: 191 YTPKLIESLAGLSVKNIVCGGHHTAILLNNGKVY-----FC---GGGAFGKLGFGSKEDI 242
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH--- 162
PK+++ + ++ EV+ G H+A++T + + + G+ G+LGH
Sbjct: 243 YIPKLLQ--GSLTNKSIKEVSLGYQHSAVITTKGK----------VYTWGQGGRLGHIYN 290
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G L P+ V++L + V++ CG HT V+S+ GDV++WG+ + LG + +
Sbjct: 291 GPEPDILSPKLVEKLNSII-AVNISCGHSHTVVISNIGDVYAWGVTRNLG---HGVIDSK 346
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+ PIL + ++ VQV+CG HT+ ++D
Sbjct: 347 PNDPTLHPIL---------QNKNIVQVSCGKTHTIALSD 376
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 153 GLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLG 212
G E GQLG +S + P+ ++ L + + V CG H++V++ +G++ WG G
Sbjct: 14 GSSEYGQLGAIYEESNIEPKLIESLYSFNRIKEVCCGGHHSAVITHSGELIVWGY----G 69
Query: 213 LCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG 272
C L + D + P +++ ++ + V+C H+ + +DG +L++WG
Sbjct: 70 GC--GQLGLGDLKDIVIPRVMT-------SIKNVINVSCSDRHSAAILEDG-RLYTWGCN 119
Query: 273 RSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDEL 305
+SG LG G I+ P L E+ +++
Sbjct: 120 KSGKLGIGSLNVNLNNNIICTPQLVEKLLNEKV 152
>gi|402901986|ref|XP_003913912.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 1
[Papio anubis]
Length = 551
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 110/239 (46%), Gaps = 31/239 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 85 STIEPRRLDSLSGKKIASLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTT 136
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 137 NHGLVPCQIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 186
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q +V++ CG V G+V+ WG N L
Sbjct: 187 GSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNG------NGQLGLG 240
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 241 SSGNQPTPCRVA--ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGN 293
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 107/259 (41%), Gaps = 57/259 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 154 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNK 205
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + D E W G NGQLG G++ + P +V L
Sbjct: 206 --VVVTIACGQMCCMAVV------DTGEVYVW--GYNGNGQLGLGSSGNQPTPCRVAAL- 254
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + V CG HT V++ G V++WG N G L +GN
Sbjct: 255 QGIRVQRVACGYAHTLVLTDEGQVYAWGA--------------NSYGQ-----LGTGNKS 295
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTG 280
+ + PV V AC + HT G ++ WG RG+S +L T
Sbjct: 296 N-QSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTD 354
Query: 281 KTIDFFAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 355 DVFACFATPAVSWRLLSVE 373
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ + G +++WG + G L SS TP V G V
Sbjct: 207 VVTIACGQMCCMAVVDTGEVYVWG------YNGNGQLGLGSSGNQPTPCRVAALQGIRVQ 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + T +D
Sbjct: 261 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPV-TVEKDRII 311
Query: 121 AVYEVTCGSFHTA 133
+ C S HT+
Sbjct: 312 EI--AACHSTHTS 322
>gi|403331454|gb|EJY64675.1| putative protein similar to vertebrate hect domain and RLD 3 (HERC3)
[Oxytricha trifallax]
Length = 2049
Score = 89.4 bits (220), Expect = 3e-15, Method: Composition-based stats.
Identities = 89/334 (26%), Positives = 142/334 (42%), Gaps = 60/334 (17%)
Query: 2 SQICSVKAGG---------MMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW 52
SQI + GG + S+ DN G L + + D + P +
Sbjct: 1571 SQILGKEVGGINKQEMCGILFSMGTDNNGQLGL--DVLSQDDQHSSHTPSIKVLYPRMII 1628
Query: 53 DFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE 112
+ +V CG+ H + + +G+ + WGAN GQLGLGD P+I+
Sbjct: 1629 SLKDEVIREVCCGNSHTMVINMSGQVF--------VWGANQTGQLGLGDNS----PQILS 1676
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPE 172
A YE H+ +T E W G G G GT + P
Sbjct: 1677 --------AGYE------HSIAITKSN------ELYIW----GSGGLCGIGTLKQQNAPV 1712
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISP 230
++ + L +V CG HT V+ + +SWG+ +G LGL P +++ + G P
Sbjct: 1713 KIDFFNKSKILTAV-CGGLHTVAVTKDWEAYSWGLTEGGQLGL-PQSTIVKLCQGQGDEP 1770
Query: 231 ILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+++ PK + QVACG AH++ +T DG ++ WG+ G LG G + D F P
Sbjct: 1771 QVLTPQ--RIPKLEGLQIAQVACGEAHSIAMTKDG-TIYGWGQSNYGQLGLGFSGDSFEP 1827
Query: 289 AIVLWPPLTEEFKQDELNTGGLDDEIKTKDLEGA 322
+ + ++ ++ E+N GL E +K + GA
Sbjct: 1828 GLGM--EKSKVYEPQEIN--GLKHEKISKIICGA 1857
Score = 76.6 bits (187), Expect = 2e-11, Method: Composition-based stats.
Identities = 83/309 (26%), Positives = 127/309 (41%), Gaps = 59/309 (19%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
+ AG S+AI + L++WG+ L T L P + F+ ++ CG
Sbjct: 1675 LSAGYEHSIAITKSNELYIWGSGGLCGIGT-----LKQQNAPVKIDFFNKSKILTAVCGG 1729
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGL------------GDRESRLRPKIIETF 114
H VA+ +D YSWG GQLGL GD L P+ I
Sbjct: 1730 LHTVAVT--------KDWEAYSWGLTEGGQLGLPQSTIVKLCQGQGDEPQVLTPQRIPKL 1781
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENG---QLGHGTTQSALV- 170
+ +V CG H+ +T +S GLG +G + G G +S +
Sbjct: 1782 EG---LQIAQVACGEAHSIAMTKDGTIYGWGQSNYGQLGLGFSGDSFEPGLGMEKSKVYE 1838
Query: 171 PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGL------CPNASLTR- 221
P+++ L ++ + + CG T + GD++ G+ LGL ASL +
Sbjct: 1839 PQEINGL-KHEKISKIICGATFTLFQTDKGDLYGCGVNDLGQLGLDTFMEEMQIASLEKV 1897
Query: 222 -----NEAGDAISP---ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK-LWSWGRG 272
N+ D I P I G H Q+ACG +H++ V+ DG LW+WG
Sbjct: 1898 KKGKHNQTSDVILPTRVICFQGIAIH--------QIACGESHSLAVSGDGMNMLWAWGMF 1949
Query: 273 RSGVLGTGK 281
++G LG G+
Sbjct: 1950 KNGQLGLGE 1958
Score = 52.0 bits (123), Expect = 5e-04, Method: Composition-based stats.
Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 43/225 (19%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCP-------LPDSSTEGGFSLVSS--FTPSPVWD 53
QI V G S+A+ G ++ WG S E G + S + P +
Sbjct: 1785 QIAQVACGEAHSIAMTKDGTIYGWGQSNYGQLGLGFSGDSFEPGLGMEKSKVYEPQEING 1844
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
+ K+ CG A + +T KG+ Y G N+ GQLGL ++ +E
Sbjct: 1845 LKHEKISKIICG-----ATFTLFQTDKGD---LYGCGVNDLGQLGLDTFMEEMQIASLEK 1896
Query: 114 F-----NQDSP------------WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGE 156
NQ S A++++ CG H+ ++ D + +M W +G+ +
Sbjct: 1897 VKKGKHNQTSDVILPTRVICFQGIAIHQIACGESHSLAVS-----GDGM-NMLWAWGMFK 1950
Query: 157 NGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
NGQLG G L P V+ L + + CG H+ V+ GD
Sbjct: 1951 NGQLGLGEVTMKLNPRPVQSLCS-SQIQRIACGSMHS--VALIGD 1992
Score = 51.6 bits (122), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 27/128 (21%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+ V F G + ++ACG H +A+ G + ++WG NGQLGLG+ +L
Sbjct: 1911 PTRVICFQGIAIHQIACGESHSLAVSGDGMN------MLWAWGMFKNGQLGLGEVTMKLN 1964
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
P+ +++ + + CGS H+ L +G+ Q+ +TQ
Sbjct: 1965 PRPVQSLCSSQ---IQRIACGSMHSVAL------------------IGDTNQISIYSTQF 2003
Query: 168 ALVPEQVK 175
EQ+K
Sbjct: 2004 YSSNEQIK 2011
>gi|338717875|ref|XP_001918080.2| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
ligase HERC1-like [Equus caballus]
Length = 4860
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 117/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P L+
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLVEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V ++ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4093 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4149
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4150 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4198
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4199 AVSTDG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4250
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4251 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 4299
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + +G +++WG G LG G T P +V
Sbjct: 4300 EHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4336
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4240 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 4293
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4294 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4343
Query: 121 AVYEVTCGSFHTA 133
+ +++ G H+A
Sbjct: 4344 -IRQISAGRCHSA 4355
>gi|260832820|ref|XP_002611355.1| hypothetical protein BRAFLDRAFT_120334 [Branchiostoma floridae]
gi|229296726|gb|EEN67365.1| hypothetical protein BRAFLDRAFT_120334 [Branchiostoma floridae]
Length = 1187
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 129/290 (44%), Gaps = 41/290 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + S P + G VV +A G
Sbjct: 393 AVNSGGKHCLALSSEGEVFSWGEA---EDGKLGHGNRNSCDRPRVIESLRGKEVVDIAAG 449
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + S GE + +WG G+LG GD E +++PK++E V +V
Sbjct: 450 GAHSACITSTGELF--------TWGKGRYGRLGHGDSEDQMKPKLVEALKGVR---VIDV 498
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L + W++G G+ G+LG G + +P++V+ L +V
Sbjct: 499 ACGSGDAQTLCITD------DDSVWSWGDGDYGKLGRGGSDGCKIPQKVEALIGQ-GVVK 551
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+CG + ++ +G V++WG KG LG + + R A+
Sbjct: 552 VECGSQFSVALTKSGCVYTWG--KGDYHRLGHGSDDHVRRPRKVAAL------------- 596
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ ++ + +A G+ H V TD G ++++WG G LG G T P +V
Sbjct: 597 QGKNVISIATGSLHCVACTDQG-EVFTWGDNDEGQLGDGSTSAIPRPRLV 645
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 109/258 (42%), Gaps = 38/258 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + AGG S I + G L+ WG G P V G V+ V
Sbjct: 442 EVVDIAAGGAHSACITSTGELFTWGKGRY---GRLGHGDSEDQMKPKLVEALKGVRVIDV 498
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L +D +SWG + G+LG G + P+ +E V
Sbjct: 499 ACGSGDAQTLCIT------DDDSVWSWGDGDYGKLGRGGSDGCKIPQKVEALIGQ---GV 549
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMC-WTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+V CGS + LT +S C +T+G G+ +LGHG+ P +V L Q
Sbjct: 550 VKVECGSQFSVALT---------KSGCVYTWGKGDYHRLGHGSDDHVRRPRKVAAL-QGK 599
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
++S+ G H + G+V++WG E LG +++ R P L++
Sbjct: 600 NVISIATGSLHCVACTDQGEVFTWGDNDEGQLGDGSTSAIPR--------PRLVAAL--Q 649
Query: 240 GPKFQDPVQVACGAAHTV 257
G K +VACG+AH++
Sbjct: 650 GKKIN---RVACGSAHSL 664
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 15/129 (11%)
Query: 165 TQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
T+S P ++ + Q+V++ V+V+ G H +SS G+V+SWG + + L
Sbjct: 372 TESVSSPTLLESI-QHVHIKKVAVNSGGKHCLALSSEGEVFSWGEAE------DGKLGHG 424
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
P +I + ++ V +A G AH+ +T G +L++WG+GR G LG G +
Sbjct: 425 NRNSCDRPRVI-----ESLRGKEVVDIAAGGAHSACITSTG-ELFTWGKGRYGRLGHGDS 478
Query: 283 IDFFAPAIV 291
D P +V
Sbjct: 479 EDQMKPKLV 487
>gi|387541132|gb|AFJ71193.1| RCC1 and BTB domain-containing protein 2 [Macaca mulatta]
Length = 551
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 110/239 (46%), Gaps = 31/239 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 85 STIEPRRLDSLSGKKIASLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTT 136
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 137 NHGLVPCQIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 186
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q +V++ CG V G+V+ WG N L
Sbjct: 187 GSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNG------NGQLGLG 240
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 241 SSGNQPTPCRVA--ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGN 293
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 105/254 (41%), Gaps = 47/254 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 154 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNK 205
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + D E W G NGQLG G++ + P +V L
Sbjct: 206 --VVVTIACGQMCCMAVV------DTGEVYVW--GYNGNGQLGLGSSGNQPTPCRVAAL- 254
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILIS 234
Q + + V CG HT V++ G V++WG + G G N S + I I+
Sbjct: 255 QGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTMEKDRIIEIA 314
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDF 285
AC + HT G ++ WG RG+S +L T
Sbjct: 315 ---------------ACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFAC 359
Query: 286 FAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 360 FATPAVSWRLLSVE 373
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ + G +++WG + G L SS TP V G V
Sbjct: 207 VVTIACGQMCCMAVVDTGEVYVWG------YNGNGQLGLGSSGNQPTPCRVAALQGIRVQ 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + T +D
Sbjct: 261 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPV-TMEKDRII 311
Query: 121 AVYEVTCGSFHTA 133
+ C S HT+
Sbjct: 312 EI--AACHSTHTS 322
>gi|344293366|ref|XP_003418394.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Loxodonta
africana]
Length = 4858
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 118/454 (25%), Positives = 185/454 (40%), Gaps = 91/454 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLP-----DSSTEGGFSLVSSFTPSPVWDFH 55
+ ++ S K +LA G ++ WG+ +SST+ L+
Sbjct: 457 IRKVSSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQG-------PLQ 509
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G VV V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 510 GKVVVCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDIS 561
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++
Sbjct: 562 N-----VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIE 609
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q +++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 610 AL-QGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEE 661
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
V ++ G +H + ++ D ++++WG G G G + P
Sbjct: 662 LAA-----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------P 705
Query: 296 LTEEFKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLL 339
+T+ K GLD I + + A RD ++ + +EE
Sbjct: 706 ITKPKK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFS 759
Query: 340 QSKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DR 393
+ S +ERY ++ I PF P S + F + K N L A
Sbjct: 760 HLR-SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVAT 812
Query: 394 SKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
S L R RN+L + D + IQE+V E L
Sbjct: 813 SILGRQAGPLRNLLFRLMDSSVPDEIQEVVIETL 846
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4091 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4147
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4148 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4196
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4197 AVSSDG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4248
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4249 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 4297
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P +V
Sbjct: 4298 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4334
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIRKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4238 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 4291
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4292 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4341
Query: 121 AVYEVTCGSFHTALLT 136
V +++ G H+A T
Sbjct: 4342 -VRQISAGRCHSAAWT 4356
>gi|351705119|gb|EHB08038.1| RCC1 and BTB domain-containing protein 2 [Heterocephalus glaber]
Length = 527
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 111/236 (47%), Gaps = 34/236 (14%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
K+AC S H++ + GE + +WG N QLG G L P + T
Sbjct: 75 KIACLSYGSGPHIILATTEGEVF--------TWGHNGYTQLGNGTTNHGLVPCQVST--N 124
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V EV CGS+H+ +LT + + +G +GQ+G G+T + +P +V
Sbjct: 125 LSNKQVIEVACGSYHSLVLTS--------DGEVYAWGYNNSGQVGSGSTANQAIPRRVTG 176
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q +V++ CG + V G+V+ WG N L +G+ +P ++
Sbjct: 177 CLQNKVVVNIACGQMCSVAVVDTGEVYVWGYNG------NGQLGLGSSGNQPTPCRVA-- 228
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G + Q +VACG AHT+++TD+G ++++WG G LGTG + P V+
Sbjct: 229 ALQGIRVQ---RVACGFAHTLVLTDEG-QVYAWGANSYGQLGTGNKSNQSYPTPVV 280
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 109/254 (42%), Gaps = 47/254 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE Y+WG NN+GQ+G G ++ P+ + Q+
Sbjct: 130 VIEVACGSYHSLVLTSDGEV--------YAWGYNNSGQVGSGSTANQAIPRRVTGCLQNK 181
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + D E W G NGQLG G++ + P +V L
Sbjct: 182 --VVVNIACGQMCSVAVV------DTGEVYVW--GYNGNGQLGLGSSGNQPTPCRVAAL- 230
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILIS 234
Q + + V CG HT V++ G V++WG + G G N S +P+++
Sbjct: 231 QGIRVQRVACGFAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYP--------TPVVVE 282
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDF 285
K + AC + HT G ++ WG RG+S +L T
Sbjct: 283 -------KDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFAC 335
Query: 286 FAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 336 FASPAVTWRLLSVE 349
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M S+A+ + G +++WG + G L SS TP V G V
Sbjct: 183 VVNIACGQMCSVAVVDTGEVYVWG------YNGNGQLGLGSSGNQPTPCRVAALQGIRVQ 236
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 237 RVACGFAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYP 276
>gi|159488564|ref|XP_001702277.1| hypothetical protein CHLREDRAFT_122886 [Chlamydomonas reinhardtii]
gi|158271254|gb|EDO97078.1| predicted protein [Chlamydomonas reinhardtii]
Length = 376
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 108/246 (43%), Gaps = 31/246 (12%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
F P P+ F G V +VACG H + + D Y++G N NGQLGLG
Sbjct: 104 FVPRPIAFFSGRPVARVACGDTHTLVVTQG-------DGALYTFGRNQNGQLGLGHTNDC 156
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
L P+++ + V V CGS H+ T +++G G G LG G +
Sbjct: 157 LSPQLVTALQGER---VSSVACGSEHSLAATE--------AGTVFSWGWGRYGNLGDGDS 205
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
Q P +V L V + SV CG H++VV+ G V+++G K L +
Sbjct: 206 QDRYTPTRVVGLDG-VTVTSVVCGWRHSAVVTDEGRVFTFGWSK------YGQLGHGDHV 258
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
D P L++ G + VA G HT+ +G L++WG + G LG G + D
Sbjct: 259 DHTRPCLVA-----GLQHCRVSTVAGGWRHTMAADSEG-NLYAWGWNKFGQLGLGDSEDR 312
Query: 286 FAPAIV 291
AP V
Sbjct: 313 AAPTPV 318
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 110/247 (44%), Gaps = 34/247 (13%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
+P V G V VACGSEH +A AG + SWG G LG GD + R
Sbjct: 157 LSPQLVTALQGERVSSVACGSEHSLAATEAGTVF--------SWGWGRYGNLGDGDSQDR 208
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
P + + + V V CG H+A++T R +TFG + GQLGHG
Sbjct: 209 YTPTRVVGLDGVT---VTSVVCGWRHSAVVTDEGR--------VFTFGWSKYGQLGHGDH 257
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
P V L Q+ + +V G HT S G++++WG K L ++
Sbjct: 258 VDHTRPCLVAGL-QHCRVSTVAGGWRHTMAADSEGNLYAWGWNK------FGQLGLGDSE 310
Query: 226 DAISPILISG----NGPHGPKFQDPVQVA---CGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
D +P ++G G P +VA CG HTV VT+ G +++SWGRG +G LG
Sbjct: 311 DRAAPTPVAGFGLAGGGVEAGAATPRRVALLACGWRHTVAVTEAG-EVYSWGRGVNGQLG 369
Query: 279 TGKTIDF 285
G D
Sbjct: 370 HGAEQDL 376
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 105/235 (44%), Gaps = 32/235 (13%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+ V+CGS H +AL+ G V SWG +GQLG G + P I
Sbjct: 12 VLGVSCGSSHSIALLDCG--------VVASWGRGEDGQLGHGQADQCTSPTCIAALTDA- 62
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V V CG+ +T + + +++G G+ G+LGHG VP +
Sbjct: 63 --GVDAVVCGAEYTVAVASSR-------GQIYSWGWGDFGRLGHGECGDVFVPRPIAFFS 113
Query: 179 QYVYLVSVDCGLFHTSVVSSA-GDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ V CG HT VV+ G ++++G + N L D +SP L++
Sbjct: 114 GRP-VARVACGDTHTLVVTQGDGALYTFGRNQ------NGQLGLGHTNDCLSPQLVTA-- 164
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ + VACG+ H++ T+ G ++SWG GR G LG G + D + P V+
Sbjct: 165 ---LQGERVSSVACGSEHSLAATEAG-TVFSWGWGRYGNLGDGDSQDRYTPTRVV 215
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 86/220 (39%), Gaps = 43/220 (19%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ SV G SLA AG ++ WG L D ++ +TP+ V G TV
Sbjct: 169 RVSSVACGSEHSLAATEAGTVFSWGWGRYGNLGDGDSQ------DRYTPTRVVGLDGVTV 222
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V CG H + G + ++G + GQLG GD RP ++
Sbjct: 223 TSVVCGWRHSAVVTDEGRVF--------TFGWSKYGQLGHGDHVDHTRPCLVAGLQHCR- 273
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL-- 177
V V G HT E + +G + GQLG G ++ P V
Sbjct: 274 --VSTVAGGWRHTMAADS--------EGNLYAWGWNKFGQLGLGDSEDRAAPTPVAGFGL 323
Query: 178 -----------PQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
P+ V L++ CG HT V+ AG+V+SWG
Sbjct: 324 AGGGVEAGAATPRRVALLA--CGWRHTVAVTEAGEVYSWG 361
>gi|354474338|ref|XP_003499388.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like
[Cricetulus griseus]
Length = 4859
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 118/454 (25%), Positives = 185/454 (40%), Gaps = 91/454 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLP-----DSSTEGGFSLVSSFTPSPVWDFH 55
+ ++ S K +LA G ++ WG+ +SST+ L+
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQG-------PLQ 509
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G VV V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 510 GKVVVCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDIS 561
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++
Sbjct: 562 N-----VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIE 609
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q +++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 610 AL-QGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEE 661
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
V ++ G +H + ++ D ++++WG G G G + P
Sbjct: 662 LAA-----TRIVDISIGDSHCLSLSHDN-EVYAWGNNSMGQCGQGNSTG----------P 705
Query: 296 LTEEFKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLL 339
+T+ K GLD I + + A RD ++ + +EE
Sbjct: 706 ITKPKK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFS 759
Query: 340 QSKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DR 393
+ S +ERY ++ I PF P S + F + K N L A
Sbjct: 760 HLR-SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVAT 812
Query: 394 SKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
S L R RN+L + D + IQE+V E L
Sbjct: 813 SILGRQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4092 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4148
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4149 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4197
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4198 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4249
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4250 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 4298
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P +V
Sbjct: 4299 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4335
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG E
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWG-EG 538
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
G L ++ P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 539 DFG-----RLGHGDSNSRNIPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4239 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 4292
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4293 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4342
Query: 121 AVYEVTCGSFHTALLTHRKRP 141
+ +++ G H+A T P
Sbjct: 4343 -IRQISAGRCHSAAWTAPPVP 4362
>gi|126272574|ref|XP_001362426.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
[Monodelphis domestica]
Length = 1057
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 100/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI + G SLA+ ++ WG GF L S P + G ++V
Sbjct: 138 QIVQIACGYYHSLALSKGSEVFSWGQN--KHGQLGLGFELKSQSAPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRFVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 107/239 (44%), Gaps = 34/239 (14%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
F V V CG H V ++ G Y+ G N+ GQ LG +SR +P+ +
Sbjct: 31 FINKKVQDVGCGLRHTVFVLDDG--------TVYTCGCNDLGQ--LGHEKSRKKPEQVVA 80
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-HGTTQSALVPE 172
+ + + V+CG HT L ND + W GL +GQLG GT + VP
Sbjct: 81 LDAQN---IVAVSCGEAHTLAL------NDKGQVYAW--GLDTDGQLGLPGTEEYIKVPR 129
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
+K L + +V + CG +H+ +S +V+SWG K L L A I +L
Sbjct: 130 NIKSLTD-IQIVQIACGYYHSLALSKGSEVFSWGQNKHGQLGLGFELKSQSAPQLIKSLL 188
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G F +QVA G AH+ ++T G ++ WGR + G LG D F P ++
Sbjct: 189 -------GIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGLNDENDRFVPNLL 236
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 132/295 (44%), Gaps = 46/295 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF--TPSPVWDFHGHTVVK 61
I +V G +LA+++ G ++ WG D+ + G + P + +V+
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG----LDTDGQLGLPGTEEYIKVPRNIKSLTDIQIVQ 141
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPW 120
+ACG H +AL E + SWG N +GQLGLG + +S+ P++I++ P+
Sbjct: 142 IACGYYHSLALSKGSEVF--------SWGQNKHGQLGLGFELKSQSAPQLIKSL-LGIPF 192
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+V G H+ +LT L + +G + GQLG VP +K L +
Sbjct: 193 M--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRFVPNLLKSL-RS 241
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 242 QKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV------- 288
Query: 241 PKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 --FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 17/139 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVQDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLGTGKTIDF 285
++WG G LG T ++
Sbjct: 106 YAWGLDTDGQLGLPGTEEY 124
>gi|392350138|ref|XP_236362.6| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Rattus
norvegicus]
Length = 4859
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V ++ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDISIGDSHCLSLSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4092 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4148
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4149 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4197
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4198 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4249
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4250 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 4298
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P +V
Sbjct: 4299 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4335
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4239 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 4292
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4293 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4342
Query: 121 AVYEVTCGSFHTA 133
+ +++ G H+A
Sbjct: 4343 -IRQISAGRCHSA 4354
>gi|402901988|ref|XP_003913913.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 2
[Papio anubis]
gi|355754693|gb|EHH58594.1| hypothetical protein EGM_08474 [Macaca fascicularis]
Length = 556
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 110/239 (46%), Gaps = 31/239 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 90 STIEPRRLDSLSGKKIASLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTT 141
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 142 NHGLVPCQIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 191
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q +V++ CG V G+V+ WG N L
Sbjct: 192 GSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNG------NGQLGLG 245
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 246 SSGNQPTPCRVA--ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGN 298
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 107/259 (41%), Gaps = 57/259 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 159 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNK 210
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + D E W G NGQLG G++ + P +V L
Sbjct: 211 --VVVTIACGQMCCMAVV------DTGEVYVW--GYNGNGQLGLGSSGNQPTPCRVAAL- 259
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + V CG HT V++ G V++WG N G L +GN
Sbjct: 260 QGIRVQRVACGYAHTLVLTDEGQVYAWGA--------------NSYGQ-----LGTGNKS 300
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTG 280
+ + PV V AC + HT G ++ WG RG+S +L T
Sbjct: 301 N-QSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTD 359
Query: 281 KTIDFFAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 360 DVFACFATPAVSWRLLSVE 378
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ + G +++WG + G L SS TP V G V
Sbjct: 212 VVTIACGQMCCMAVVDTGEVYVWG------YNGNGQLGLGSSGNQPTPCRVAALQGIRVQ 265
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + T +D
Sbjct: 266 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPV-TVEKDRII 316
Query: 121 AVYEVTCGSFHTA 133
+ C S HT+
Sbjct: 317 EI--AACHSTHTS 327
>gi|417407323|gb|JAA50277.1| Putative rcc1 and btb domain-containing protein 2, partial
[Desmodus rotundus]
Length = 511
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 110/236 (46%), Gaps = 34/236 (14%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
K+AC S H+V + GE + +WG N QLG G P I T
Sbjct: 85 KIACLSYGSGPHIVLATTEGEVF--------TWGHNAYNQLGNGTTNHGSVPCHIST--N 134
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V EV CGS+H+ +LT E W G +GQ+G G+T + +P +V
Sbjct: 135 LSNKQVIEVACGSYHSLVLTSDG------EVFAW--GCNNSGQVGSGSTANQPIPRRVTG 186
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q +V++ CG + V +G+V+ WG N L +G+ +P I+
Sbjct: 187 CLQNRVVVNIACGQMCSMAVVDSGEVYVWGYNG------NGQLGLGSSGNHSTPCRIAA- 239
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G + Q +VACG AHT+++TDDG ++++WG G LGTG + P V+
Sbjct: 240 -LQGIRVQ---RVACGYAHTLVLTDDG-QVYAWGANSYGQLGTGNKSNQSYPTPVV 290
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 111/253 (43%), Gaps = 45/253 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE ++WG NN+GQ+G G ++ P+ + Q+
Sbjct: 140 VIEVACGSYHSLVLTSDGEV--------FAWGCNNSGQVGSGSTANQPIPRRVTGCLQNR 191
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + D E W G NGQLG G++ + P ++ L
Sbjct: 192 --VVVNIACGQMCSMAVV------DSGEVYVW--GYNGNGQLGLGSSGNHSTPCRIAAL- 240
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAI-SPILISG 235
Q + + V CG HT V++ G V++WG LG T N++ + +P+++
Sbjct: 241 QGIRVQRVACGYAHTLVLTDDGQVYAWGANSYGQLG-------TGNKSNQSYPTPVVVE- 292
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFF 286
K + AC + HT G ++ WG RG+S +L T F
Sbjct: 293 ------KDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHLSCTDDVFACF 346
Query: 287 APAIVLWPPLTEE 299
A V W L+ E
Sbjct: 347 ATPAVSWRLLSVE 359
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 17/108 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS---FTPSPVWDFHGHTVV 60
+ ++ G M S+A+ ++G +++WG + G L SS TP + G V
Sbjct: 193 VVNIACGQMCSMAVVDSGEVYVWG------YNGNGQLGLGSSGNHSTPCRIAALQGIRVQ 246
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 247 RVACGYAHTLVLTDDGQVY--------AWGANSYGQLGTGNKSNQSYP 286
>gi|340729980|ref|XP_003403270.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Bombus
terrestris]
Length = 1104
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 130/297 (43%), Gaps = 54/297 (18%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTVVKVAC 64
G ++A++ G L+ WG S++EG L S +P V +V++AC
Sbjct: 139 CGAYHTIAVNEWGQLFSWG------SNSEGQLGLNSKNFMECSPRMVKTLGTSIIVQIAC 192
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPWAVY 123
G +H +AL + GE Y SWG+N+ GQLGLG D ++PK+I T P A
Sbjct: 193 GMKHALALTNNGELY--------SWGSNSEGQLGLGVDIRCEMKPKLINTL-AGVPIAF- 242
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKELPQYV 181
+ CG +H+ ++ FG G+N GQLG TQ+ +P Q++ L +
Sbjct: 243 -IACGGYHSIAISKSGA----------IFGWGKNTFGQLGLNDTQNRNLPYQLQTL-RNA 290
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ CG + ++ G V++ G + G G N L R S +
Sbjct: 291 KVCYAACGEEFSVFLTVDGGVFTCGAGMYGQLGHGSNNNEILPRQVMELMGSTV------ 344
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
Q++CG HT+ + ++++WG G +G LG T P +V P
Sbjct: 345 ---------TQISCGKRHTLALVPSQGRVYAWGLGGAGQLGNNSTRSTTTPQVVRGP 392
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 97/207 (46%), Gaps = 31/207 (14%)
Query: 80 KGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET-FNQDSPWAVYEVTCGSFHTALLTHR 138
K ED+ C WG +G+LGLG E + E F + S + ++ CG +T ++TH
Sbjct: 45 KKEDMFC--WGNTRHGELGLGGIEDEIILVPCEVDFKKAS--EIQQIACGENYTVVITH- 99
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSS 198
+ ++ G + GQLGH + L + + L +V+ + CG +HT V+
Sbjct: 100 -------DGKIYSCGNNDYGQLGHEQGRKRL--QLILGLDAFVFKKAA-CGAYHTIAVNE 149
Query: 199 AGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHT 256
G ++SWG E LGL + SP ++ G VQ+ACG H
Sbjct: 150 WGQLFSWGSNSEGQLGLNSKNFM-------ECSPRMVKTLGT-----SIIVQIACGMKHA 197
Query: 257 VLVTDDGYKLWSWGRGRSGVLGTGKTI 283
+ +T++G +L+SWG G LG G I
Sbjct: 198 LALTNNG-ELYSWGSNSEGQLGLGVDI 223
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHTVV 60
I + GG S+AI +GA++ WG +T G L + P + V
Sbjct: 240 IAFIACGGYHSIAISKSGAIFGWG------KNTFGQLGLNDTQNRNLPYQLQTLRNAKVC 293
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
ACG E V L G ++ GA GQLG G + + P+ + +
Sbjct: 294 YAACGEEFSVFLTVDGGV--------FTCGAGMYGQLGHGSNNNEILPRQVMELMGST-- 343
Query: 121 AVYEVTCGSFHT-ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V +++CG HT AL+ + R + +GLG GQLG+ +T+S P+ V+
Sbjct: 344 -VTQISCGKRHTLALVPSQGR--------VYAWGLGGAGQLGNNSTRSTTTPQVVR 390
>gi|313236427|emb|CBY11744.1| unnamed protein product [Oikopleura dioica]
Length = 516
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 125/294 (42%), Gaps = 42/294 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ +I + K S+AI G +W WG+ D G + +P + +V
Sbjct: 213 VRKILTSKGSDGHSIAIGKNGQIWTWGD---GDYGKLGHGDSTTQKSPKLIEALASRVIV 269
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
CG H A+ AG Y WG + G+LGLGD R P + + S
Sbjct: 270 DADCGHRHSAAVCDAGHLYM--------WGEGDYGRLGLGDALQRSVPVQVPDIREAS-- 319
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+V CG HT +L+ R W+FG ENG+LGHG T P+ + L Q
Sbjct: 320 ---QVVCGFNHTVVLSTDGR-------TVWSFGAAENGKLGHGDTNRQFRPKIIDAL-QG 368
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDA--ISPILISGNGP 238
+ + + G ++ V+ G ++ WG LG N + D + P ++
Sbjct: 369 LTITQIAAGTQISAAVTREGALYVWGFGPCLG---------NGSSDETFMLPKVV----- 414
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI-DFFAPAIV 291
G + + +A G H V +T DG +++WG ++G GTG + + +P +V
Sbjct: 415 RGLSGRVVIDIAVGENHVVALTKDGL-VFTWGNNQNGQCGTGSGMATYTSPQMV 467
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 81/240 (33%), Gaps = 68/240 (28%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I G S A+ +AG L+MWG D G + P V D +V
Sbjct: 268 IVDADCGHRHSAAVCDAGHLYMWGE---GDYGRLGLGDALQRSVPVQVPDIR--EASQVV 322
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII------------ 111
CG H V L + G T +S+GA NG+LG GD + RPKII
Sbjct: 323 CGFNHTVVLSTDGRT-------VWSFGAAENGKLGHGDTNRQFRPKIIDALQGLTITQIA 375
Query: 112 ------------------------------ETF------NQDSPWAVYEVTCGSFHTALL 135
ETF S V ++ G H L
Sbjct: 376 AGTQISAAVTREGALYVWGFGPCLGNGSSDETFMLPKVVRGLSGRVVIDIAVGENHVVAL 435
Query: 136 THRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
T + + +T+G +NGQ G G+ + Q+ + + V G HT V
Sbjct: 436 TK--------DGLVFTWGNNQNGQCGTGSGMATYTSPQMVQGLHGAGIQQVTAGTTHTFV 487
>gi|74213730|dbj|BAC39029.2| unnamed protein product [Mus musculus]
Length = 1203
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V ++ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDISIGDSHCLSLSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG E
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWG-EG 538
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
G L ++ P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 539 DFG-----RLGHGDSNSRNIPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
>gi|242074110|ref|XP_002446991.1| hypothetical protein SORBIDRAFT_06g026493 [Sorghum bicolor]
gi|241938174|gb|EES11319.1| hypothetical protein SORBIDRAFT_06g026493 [Sorghum bicolor]
Length = 1024
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 131/293 (44%), Gaps = 38/293 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+V G + A+ +G L+ WG P D + F+P G +VVK+
Sbjct: 317 AVAYGSKHACAVTVSGELFEWGEGPHMGQLDCYANNLWFPHKLFSP-----LDGISVVKI 371
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG H + S+G+ Y ++G G LG GD + RPK +E V
Sbjct: 372 ACGPWHTAIITSSGQLY--------TYGDGTFGVLGHGDTQGTTRPKEVEYLKGSR---V 420
Query: 123 YEVTCGSFHTALLTH--RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V CG +HTA + ++ S +T+G + G+LGH + L+P V L Y
Sbjct: 421 KCVACGPWHTAAIVEVLSDFKSNSPRSKLFTWGDADRGKLGHADKKMKLIPTCVDSLTDY 480
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ + V CG+ T V+S G V++ G M LG N D + + G
Sbjct: 481 DF-IQVSCGMALTVVLSITGVVFTIGSSMHGQLG---------NPHADGRTVCAVEGL-- 528
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + ++ G++H ++T +G K+++WG+G+ G LG G ++ P +V
Sbjct: 529 --LKTEFVRHISSGSSHVAVLTTNG-KVFTWGKGKEGQLGLGDYLNRSTPTLV 578
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 94/239 (39%), Gaps = 59/239 (24%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +ACG H + GE Y SWG ++G +G RPK++E+ +
Sbjct: 263 VQSIACGETHAAIITKQGEVY--------SWGNESSGGIGNQVNIKVSRPKLVESV---A 311
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH--GTTQSALVPEQVKE 176
V V GS H +T ++ E W GE +G + P ++
Sbjct: 312 SLHVKAVAYGSKHACAVT---VSGELFE---W----GEGPHMGQLDCYANNLWFPHKLFS 361
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ +V + CG +HT++++S+G ++++ GD +L G+
Sbjct: 362 PLDGISVVKIACGPWHTAIITSSGQLYTY-------------------GDGTFGVLGHGD 402
Query: 237 --GPHGPKFQDPVQ------VACGAAHTVLVTD---------DGYKLWSWGRGRSGVLG 278
G PK + ++ VACG HT + + KL++WG G LG
Sbjct: 403 TQGTTRPKEVEYLKGSRVKCVACGPWHTAAIVEVLSDFKSNSPRSKLFTWGDADRGKLG 461
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V ++ GS HV L + G+ + +WG GQLGLGD +R P +++
Sbjct: 534 VRHISSGSSHVAVLTTNGKVF--------TWGKGKEGQLGLGDYLNRSTPTLVDALEGRQ 585
Query: 119 PWAVYEVTCGSFHTALLTHRK 139
V ++CG +TA + K
Sbjct: 586 ---VESISCGYNYTAAVCLHK 603
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 91/242 (37%), Gaps = 59/242 (24%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + G + I ++G L+ +G+ L T+G + P V G V
Sbjct: 368 VVKIACGPWHTAIITSSGQLYTYGDGTFGVLGHGDTQG------TTRPKEVEYLKGSRVK 421
Query: 61 KVACGSEHVVALVSAGETYKGED--LVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VACG H A+V +K ++WG + G+LG D++ +L P +++ +
Sbjct: 422 CVACGPWHTAAIVEVLSDFKSNSPRSKLFTWGDADRGKLGHADKKMKLIPTCVDSL---T 478
Query: 119 PWAVYEVTCGSFHTALLT--------------HRKRPNDMLESMC--------------- 149
+ +V+CG T +L+ P+ ++C
Sbjct: 479 DYDFIQVSCGMALTVVLSITGVVFTIGSSMHGQLGNPHADGRTVCAVEGLLKTEFVRHIS 538
Query: 150 ---------------WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTS 194
+T+G G+ GQLG G + P V L + + S+ CG +T+
Sbjct: 539 SGSSHVAVLTTNGKVFTWGKGKEGQLGLGDYLNRSTPTLVDAL-EGRQVESISCGYNYTA 597
Query: 195 VV 196
V
Sbjct: 598 AV 599
>gi|242004863|ref|XP_002423296.1| hypothetical protein Phum_PHUM047680 [Pediculus humanus corporis]
gi|212506298|gb|EEB10558.1| hypothetical protein Phum_PHUM047680 [Pediculus humanus corporis]
Length = 1229
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 128/296 (43%), Gaps = 44/296 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPV--WDFHGH 57
+I SV G A+ G ++ WG L T SL PSP+ +
Sbjct: 823 KINSVLNCGYGHTALIRNGTIYTWGQTVKGCLGQGPTMSRHSL-----PSPISLLNCFKL 877
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+ VACG H AL + G Y+WG + GQLGLGD P++I + +
Sbjct: 878 EVLYVACGKNHTTALTNNG---------VYAWGCSKYGQLGLGDVYESPYPRLITSLANE 928
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ V ++CG FHT LT + + + +G G +GQLG G +P V L
Sbjct: 929 N---VITLSCGQFHTLALTEKGQ--------VFAWGWGVHGQLGLGNIDDQRLPVCVNHL 977
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILI 233
V + + G H+ V+S G ++S+G + G G +S+ G + ILI
Sbjct: 978 KDQV-IKDIAAGHGHSLVLSDKGQIFSFGSGVFGQLGTGNTTKSSVPVLIQGISEKIILI 1036
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA 289
+ H ++CG H+ L+T G +++WGR G LG G + AP
Sbjct: 1037 ATGYFHS--------ISCGCHHSALLTVSG-GVYTWGRSLDGQLGNGGHKEVTAPT 1083
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 110/268 (41%), Gaps = 49/268 (18%)
Query: 29 CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYS 88
C P + E +LV F ++V+ CG H AL+ G Y +
Sbjct: 803 CTTPQKTMESSGTLVELFNKKI------NSVLN--CGYGHT-ALIRNGTIY--------T 845
Query: 89 WGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLES 147
WG G LG G SR P I N +Y V CG HT LT+
Sbjct: 846 WGQTVKGCLGQGPTMSRHSLPSPISLLNCFKLEVLY-VACGKNHTTALTNNG-------- 896
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV--WSW 205
+ +G + GQLG G + P + L ++++ CG FHT ++ G V W W
Sbjct: 897 -VYAWGCSKYGQLGLGDVYESPYPRLITSLANE-NVITLSCGQFHTLALTEKGQVFAWGW 954
Query: 206 GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV--QVACGAAHTVLVTDDG 263
G+ LGL D P+ ++ +D V +A G H+++++D G
Sbjct: 955 GVHGQLGL--------GNIDDQRLPVCVN-------HLKDQVIKDIAAGHGHSLVLSDKG 999
Query: 264 YKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+++S+G G G LGTG T P ++
Sbjct: 1000 -QIFSFGSGVFGQLGTGNTTKSSVPVLI 1026
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 83/208 (39%), Gaps = 24/208 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+ ++ G +LA+ G ++ WG G ++ P V + +
Sbjct: 929 NVITLSCGQFHTLALTEKGQVFAWG---WGVHGQLGLGNIDDQRLPVCVNHLKDQVIKDI 985
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD----S 118
A G H + L G+ + S+G+ GQLG G+ P +I+ ++ +
Sbjct: 986 AAGHGHSLVLSDKGQIF--------SFGSGVFGQLGTGNTTKSSVPVLIQGISEKIILIA 1037
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ ++CG H+ALLT + +T+G +GQLG+G + P Q+ E
Sbjct: 1038 TGYFHSISCGCHHSALLT--------VSGGVYTWGRSLDGQLGNGGHKEVTAPTQINENT 1089
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+S C F + G ++ WG
Sbjct: 1090 FKADCISCGCE-FTAAQEKQTGKIFCWG 1116
>gi|109484871|ref|XP_001075834.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Rattus
norvegicus]
Length = 4859
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V ++ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDISIGDSHCLSLSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4092 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4148
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4149 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4197
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4198 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4249
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4250 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 4298
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P +V
Sbjct: 4299 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4335
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG E
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWG-EG 538
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
G L ++ P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 539 DFG-----RLGHGDSNSRNIPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4239 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 4292
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4293 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4342
Query: 121 AVYEVTCGSFHTA 133
+ +++ G H+A
Sbjct: 4343 -IRQISAGRCHSA 4354
>gi|332241905|ref|XP_003270125.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 2
[Nomascus leucogenys]
Length = 556
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 31/239 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + +G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 90 STIEPRRLDSLNGKKIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTT 141
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 142 NHGLVPCHIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 191
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q +V++ CG V G+V+ WG N L
Sbjct: 192 GSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNG------NGQLGLG 245
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 246 NSGNQPTPCRVA--ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGN 298
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 106/259 (40%), Gaps = 57/259 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 159 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNK 210
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + D E W G NGQLG G + + P +V L
Sbjct: 211 --VVVTIACGQMCCMAVV------DTGEVYVW--GYNGNGQLGLGNSGNQPTPCRVAAL- 259
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + V CG HT V++ G V++WG N G L +GN
Sbjct: 260 QGIRVQRVACGYAHTLVLTDEGQVYAWGA--------------NSYGQ-----LGTGNKS 300
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTG 280
+ + PV V AC + HT G ++ WG RG+S +L T
Sbjct: 301 N-QSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTD 359
Query: 281 KTIDFFAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 360 DVFACFATPAVTWRLLSVE 378
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ + G +++WG + G L +S TP V G V
Sbjct: 212 VVTIACGQMCCMAVVDTGEVYVWG------YNGNGQLGLGNSGNQPTPCRVAALQGIRVQ 265
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + T +D
Sbjct: 266 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPV-TVEKDRII 316
Query: 121 AVYEVTCGSFHTA 133
+ C S HT+
Sbjct: 317 EI--AACHSTHTS 327
>gi|148694174|gb|EDL26121.1| mCG130390 [Mus musculus]
Length = 4870
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 118/454 (25%), Positives = 185/454 (40%), Gaps = 91/454 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLP-----DSSTEGGFSLVSSFTPSPVWDFH 55
+ ++ S K +LA G ++ WG+ +SST+ L+
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQG-------PLQ 509
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G VV V+ G H A+ GE Y+WG + G+LG GD SR P +++ +
Sbjct: 510 GKVVVCVSAGYRHSAAVTEDGE--------LYTWGEGDFGRLGHGDSNSRNIPTLVKDIS 561
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++
Sbjct: 562 N-----VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIE 609
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q +++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 610 AL-QGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEE 661
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
V ++ G +H + ++ D ++++WG G G G + P
Sbjct: 662 LAA-----TRIVDISIGDSHCLSLSHDN-EVYAWGNNSMGQCGQGNSTG----------P 705
Query: 296 LTEEFKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLL 339
+T+ K GLD I + + A RD ++ + +EE
Sbjct: 706 ITKPKK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFS 759
Query: 340 QSKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DR 393
+ S +ERY ++ I PF P S + F + K N L A
Sbjct: 760 HLR-SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVAT 812
Query: 394 SKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
S L R RN+L + D + IQE+V E L
Sbjct: 813 SILGRQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4103 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4159
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ +++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4160 SDGK--------LFTFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4208
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4209 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4260
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4261 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 4309
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P +V
Sbjct: 4310 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4346
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4250 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 4303
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4304 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4353
Query: 121 AVYEVTCGSFHTA 133
+ +++ G H+A
Sbjct: 4354 -IRQISAGRCHSA 4365
>gi|126272576|ref|XP_001362510.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
[Monodelphis domestica]
Length = 1049
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 100/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI + G SLA+ ++ WG GF L S P + G ++V
Sbjct: 138 QIVQIACGYYHSLALSKGSEVFSWGQN--KHGQLGLGFELKSQSAPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRFVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 107/239 (44%), Gaps = 34/239 (14%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
F V V CG H V ++ G Y+ G N+ GQ LG +SR +P+ +
Sbjct: 31 FINKKVQDVGCGLRHTVFVLDDG--------TVYTCGCNDLGQ--LGHEKSRKKPEQVVA 80
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-HGTTQSALVPE 172
+ + + V+CG HT L ND + W GL +GQLG GT + VP
Sbjct: 81 LDAQN---IVAVSCGEAHTLAL------NDKGQVYAW--GLDTDGQLGLPGTEEYIKVPR 129
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
+K L + +V + CG +H+ +S +V+SWG K L L A I +L
Sbjct: 130 NIKSLTD-IQIVQIACGYYHSLALSKGSEVFSWGQNKHGQLGLGFELKSQSAPQLIKSLL 188
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G F +QVA G AH+ ++T G ++ WGR + G LG D F P ++
Sbjct: 189 -------GIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGLNDENDRFVPNLL 236
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 132/295 (44%), Gaps = 46/295 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF--TPSPVWDFHGHTVVK 61
I +V G +LA+++ G ++ WG D+ + G + P + +V+
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG----LDTDGQLGLPGTEEYIKVPRNIKSLTDIQIVQ 141
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPW 120
+ACG H +AL E + SWG N +GQLGLG + +S+ P++I++ P+
Sbjct: 142 IACGYYHSLALSKGSEVF--------SWGQNKHGQLGLGFELKSQSAPQLIKSL-LGIPF 192
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+V G H+ +LT L + +G + GQLG VP +K L +
Sbjct: 193 M--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRFVPNLLKSL-RS 241
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 242 QKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV------- 288
Query: 241 PKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 --FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 17/139 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVQDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLGTGKTIDF 285
++WG G LG T ++
Sbjct: 106 YAWGLDTDGQLGLPGTEEY 124
>gi|397480406|ref|XP_003811475.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 2 [Pan
paniscus]
gi|426375451|ref|XP_004054552.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like isoform 3
[Gorilla gorilla gorilla]
gi|194376922|dbj|BAG63022.1| unnamed protein product [Homo sapiens]
Length = 556
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 31/239 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + +G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 90 STIEPRRLDSLNGKKIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTT 141
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 142 NHGLVPCHIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 191
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q +V++ CG V G+V+ WG N L
Sbjct: 192 GSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNG------NGQLGLG 245
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 246 NSGNQPTPCRVA--ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGN 298
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 106/259 (40%), Gaps = 57/259 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 159 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNK 210
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + D E W G NGQLG G + + P +V L
Sbjct: 211 --VVVTIACGQMCCMAVV------DTGEVYVW--GYNGNGQLGLGNSGNQPTPCRVAAL- 259
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + V CG HT V++ G V++WG N G L +GN
Sbjct: 260 QGIRVQRVACGYAHTLVLTDEGQVYAWGA--------------NSYGQ-----LGTGNKS 300
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTG 280
+ + PV V AC + HT G ++ WG RG+S +L T
Sbjct: 301 N-QSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTD 359
Query: 281 KTIDFFAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 360 DVFACFATPAVTWRLLSVE 378
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ + G +++WG + G L +S TP V G V
Sbjct: 212 VVTIACGQMCCMAVVDTGEVYVWG------YNGNGQLGLGNSGNQPTPCRVAALQGIRVQ 265
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + T +D
Sbjct: 266 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPV-TVEKDRII 316
Query: 121 AVYEVTCGSFHTA 133
+ C S HT+
Sbjct: 317 EI--AACHSTHTS 327
>gi|345325115|ref|XP_001514077.2| PREDICTED: RCC1 and BTB domain-containing protein 2
[Ornithorhynchus anatinus]
Length = 721
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 121/274 (44%), Gaps = 35/274 (12%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS-E 67
AG + A +N + NC S G + ++ P + G + ++ GS
Sbjct: 224 AGNEVLYATENDEVFVLGTNC----SGCLGTGDVQNTIEPRRIDSLCGKKITCLSYGSGP 279
Query: 68 HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC 127
HVV + GE Y +WG N QLG G L P + T + V EV C
Sbjct: 280 HVVVATAEGEVY--------TWGHNAYSQLGNGTTNHGLIPCHVSTNLVNK--KVVEVAC 329
Query: 128 GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVD 187
GS H+ +LT + + +G +GQ+G G+T + +P +V Q ++
Sbjct: 330 GSHHSLVLTS--------DGEVYAWGYNNSGQVGSGSTANQPIPRRVTSCLQNKIATNIA 381
Query: 188 CGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV 247
CG + V +G+V+ WG N L +G+ +P I+ G + Q
Sbjct: 382 CGQMCSMAVVESGEVYVWGYNG------NGQLGLGSSGNQPTPCRIAA--LQGIRVQ--- 430
Query: 248 QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+V CG AHT+++TD+G +L++WG G LGTG
Sbjct: 431 RVTCGYAHTLVLTDEG-QLYAWGANSYGQLGTGN 463
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 103/250 (41%), Gaps = 43/250 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV+VACGS H + L S GE Y+WG NN+GQ+G G ++ P+ + + Q+
Sbjct: 324 VVEVACGSHHSLVLTSDGEV--------YAWGYNNSGQVGSGSTANQPIPRRVTSCLQNK 375
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ CG + + + +G NGQLG G++ + P ++ L
Sbjct: 376 --IATNIACGQMCSMAVVESGE--------VYVWGYNGNGQLGLGSSGNQPTPCRIAAL- 424
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + V CG HT V++ G +++WG L + PI +
Sbjct: 425 QGIRVQRVTCGYAHTLVLTDEGQLYAWGANS------YGQLGTGNKSNQSYPIPV----- 473
Query: 239 HGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFA 287
P +D + AC +AHT ++ WG RG+S L T FA
Sbjct: 474 --PVEKDRIIEIAACHSAHTSAAKTQSGHVYMWGQCRGQSVTLPHLTHFSCTDDVFACFA 531
Query: 288 PAIVLWPPLT 297
V W L+
Sbjct: 532 TPAVTWRLLS 541
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 17/106 (16%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVVKV 62
++ G M S+A+ +G +++WG + G L SS TP + G V +V
Sbjct: 379 NIACGQMCSMAVVESGEVYVWG------YNGNGQLGLGSSGNQPTPCRIAALQGIRVQRV 432
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
CG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 433 TCGYAHTLVLTDEGQLY--------AWGANSYGQLGTGNKSNQSYP 470
>gi|26327145|dbj|BAC27316.1| unnamed protein product [Mus musculus]
Length = 551
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 115/250 (46%), Gaps = 31/250 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 85 STIEPRRLDSLTGKKIASLSYGSGPHIVLATTDGEVF--------TWGHNAYSQLGNGTT 136
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 137 NHGLVPCHIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 186
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q ++++ CG + V G+V+ WG N L
Sbjct: 187 GSTANQPIPRRVTGCLQNKVVMNISCGQMCSMAVVDTGEVYVWGYNG------NGQLGLG 240
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 241 SSGNQPTPCRVAA--LQGIRVQ---RVACGYAHTLVLTDEG-QIYAWGANSYGQLGTGNK 294
Query: 283 IDFFAPAIVL 292
+ P V+
Sbjct: 295 SNQSYPTPVV 304
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 111/254 (43%), Gaps = 47/254 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 154 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQPIPRRVTGCLQNK 205
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V ++CG + + D E W G NGQLG G++ + P +V L
Sbjct: 206 --VVMNISCGQMCSMAVV------DTGEVYVW--GYNGNGQLGLGSSGNQPTPCRVAAL- 254
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILIS 234
Q + + V CG HT V++ G +++WG + G G N S +P+++
Sbjct: 255 QGIRVQRVACGYAHTLVLTDEGQIYAWGANSYGQLGTGNKSNQSYP--------TPVVVE 306
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDF 285
K + AC +AHT G ++ WG RG+S +L T
Sbjct: 307 -------KDRIIEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVILPHHTHFCCTDDVFAC 359
Query: 286 FAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 360 FATPAVTWRLLSVE 373
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M S+A+ + G +++WG + G L SS TP V G V
Sbjct: 207 VMNISCGQMCSMAVVDTGEVYVWG------YNGNGQLGLGSSGNQPTPCRVAALQGIRVQ 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 261 RVACGYAHTLVLTDEGQIY--------AWGANSYGQLGTGNKSNQSYP 300
>gi|257196144|ref|NP_663592.3| hect domain and RCC1-like domain 1 [Mus musculus]
Length = 4859
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 118/454 (25%), Positives = 185/454 (40%), Gaps = 91/454 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLP-----DSSTEGGFSLVSSFTPSPVWDFH 55
+ ++ S K +LA G ++ WG+ +SST+ L+
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQG-------PLQ 509
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G VV V+ G H A+ GE Y+WG + G+LG GD SR P +++ +
Sbjct: 510 GKVVVCVSAGYRHSAAVTEDGE--------LYTWGEGDFGRLGHGDSNSRNIPTLVKDIS 561
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++
Sbjct: 562 N-----VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIE 609
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q +++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 610 AL-QGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEE 661
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
V ++ G +H + ++ D ++++WG G G G + P
Sbjct: 662 LAA-----TRIVDISIGDSHCLSLSHDN-EVYAWGNNSMGQCGQGNSTG----------P 705
Query: 296 LTEEFKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLL 339
+T+ K GLD I + + A RD ++ + +EE
Sbjct: 706 ITKPKK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFS 759
Query: 340 QSKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DR 393
+ S +ERY ++ I PF P S + F + K N L A
Sbjct: 760 HLR-SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVAT 812
Query: 394 SKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
S L R RN+L + D + IQE+V E L
Sbjct: 813 SILGRQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4092 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4148
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ +++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4149 SDGK--------LFTFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4197
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4198 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4249
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4250 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 4298
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P +V
Sbjct: 4299 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4335
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4239 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 4292
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4293 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4342
Query: 121 AVYEVTCGSFHTA 133
+ +++ G H+A
Sbjct: 4343 -IRQISAGRCHSA 4354
>gi|61563742|ref|NP_060382.3| probable E3 ubiquitin-protein ligase HERC6 isoform 1 [Homo sapiens]
gi|74750679|sp|Q8IVU3.2|HERC6_HUMAN RecName: Full=Probable E3 ubiquitin-protein ligase HERC6; AltName:
Full=HECT domain and RCC1-like domain-containing protein
6
gi|48686728|gb|AAQ14893.1|AF336798_1 HERC6 [Homo sapiens]
gi|66840150|gb|AAH42047.2| Hect domain and RLD 6 [Homo sapiens]
gi|194381386|dbj|BAG58647.1| unnamed protein product [Homo sapiens]
Length = 1022
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 115/246 (46%), Gaps = 31/246 (12%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRL 106
P P+ V V+CG EH +A+ G ++WGA + GQLG+G+ +E
Sbjct: 66 PEPIQALETLIVDLVSCGKEHSLAVCHKGRV--------FAWGAGSEGQLGIGEFKEISF 117
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT- 165
PK I T N + +V+CG +H+ L+ +S +++G +GQLG G
Sbjct: 118 TPKKIMTLND---IKIIQVSCGHYHSLALSK--------DSQVFSWGKNSHGQLGLGKEF 166
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
S P++V+ L + + L V G H+ +S G + WG L + RN
Sbjct: 167 PSQASPQRVRSL-EGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSG---RNVPV 222
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ P+ + G V ++CG AHT ++T DG K++++G RSG LG T +
Sbjct: 223 QSNKPLSVGALKNLG-----VVYISCGDAHTAVLTQDG-KVFTFGDNRSGQLGYSPTPEK 276
Query: 286 FAPAIV 291
P +V
Sbjct: 277 RGPQLV 282
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 123/286 (43%), Gaps = 66/286 (23%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHTVVKV 62
V G SLA+ + G ++ WG + +EG + SFTP + + +++V
Sbjct: 80 VSCGKEHSLAVCHKGRVFAWG------AGSEGQLGIGEFKEISFTPKKIMTLNDIKIIQV 133
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWA 121
+CG H +AL +D +SWG N++GQLGLG S+ P+ + + + P A
Sbjct: 134 SCGHYHSLAL--------SKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSL-EGIPLA 184
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWT-FGLGEN--GQL---GHGTTQSALVPEQVK 175
+V G H+ L S+C T FG G N GQL G + P V
Sbjct: 185 --QVAAGGAHSFAL-----------SLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVG 231
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILI 233
L + + +V + CG HT+V++ G V+++G + LG P
Sbjct: 232 AL-KNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPE--------------- 275
Query: 234 SGNGPHGPKFQDPV-----QVACGAAHTVLVTDDGYKLWSWGRGRS 274
GP+ + + Q+ CG+ HT+ ++ S+G G S
Sbjct: 276 ----KRGPQLVERIDGLVSQIDCGSYHTLAYVHTTGQVVSFGHGPS 317
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 12/134 (8%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ G + WG+ + G V S P V VV ++
Sbjct: 183 LAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYIS 242
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H L G+ +++G N +GQLG + P+++E + V
Sbjct: 243 CGDAHTAVLTQDGKV--------FTFGDNRSGQLGYSPTPEKRGPQLVERID----GLVS 290
Query: 124 EVTCGSFHTALLTH 137
++ CGS+HT H
Sbjct: 291 QIDCGSYHTLAYVH 304
>gi|408500692|ref|YP_006864611.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
gi|408465516|gb|AFU71045.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
Length = 1279
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 132/339 (38%), Gaps = 72/339 (21%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
V AGG S+ + + G + WGN L + P P T +VA
Sbjct: 797 VSAGGSFSIGVASDGNAYAWGNNKYGQLAQKPADVSMQKTPVRIPLPDGADSSFTYTQVA 856
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII-ETFNQDSPWAV 122
G HV+A+ S G + YSWG N++GQLG G R P+ + +T Q P+
Sbjct: 857 AGDSHVLAIGSNG--------IVYSWGRNDHGQLGDGTTTDRYNPQPVKDTGGQ--PFKA 906
Query: 123 YEVTCGSFHTALL-----------------------THRKRPNDMLE------------- 146
+V+ G +A + T RK P +
Sbjct: 907 VQVSAGVADSAAIDSENRVYTWGSESTGKGQTPAYSTTRKNPTPAADPDNPGQTLHAVQV 966
Query: 147 SMCWTF-------------GLGENGQLGHGTTQSALVPEQVKELPQYVYLVS-VDCGLFH 192
S+ W+F G NGQLG+GT+ S LP + S + G +H
Sbjct: 967 SLNWSFVMALDADGNVYTWGYNTNGQLGNGTSDSTSYASNPARLPSQSFQASQISAGSWH 1026
Query: 193 TSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACG 252
+ + G+ W+WG G G + S + D P + N + Q++ G
Sbjct: 1027 ALAIDTDGNTWTWGYN-GYGQLGDGSTS-----DKYKPQTVQ-NPTDTSQSLKATQISAG 1079
Query: 253 AAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
H+++V DG LW+WG +G LG G T++ PA +
Sbjct: 1080 VDHSLVVDRDG-SLWAWGWNSNGQLGIGNTVNQTKPATI 1117
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 117/285 (41%), Gaps = 30/285 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV--V 60
+ V AG S AID+ ++ WG+ T + + TP+ D G T+ V
Sbjct: 905 KAVQVSAGVADSAAIDSENRVYTWGSESTGKGQTPAYSTTRKNPTPAADPDNPGQTLHAV 964
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+V+ V+AL + G Y+WG N NGQLG G +S S +
Sbjct: 965 QVSLNWSFVMALDADGN--------VYTWGYNTNGQLGNGTSDSTSYASNPARLPSQS-F 1015
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK---EL 177
+++ GS+H + + WT+G GQLG G+T P+ V+ +
Sbjct: 1016 QASQISAGSWHALAID--------TDGNTWTWGYNGYGQLGDGSTSDKYKPQTVQNPTDT 1067
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
Q + + G+ H+ VV G +W+WG N L + P I
Sbjct: 1068 SQSLKATQISAGVDHSLVVDRDGSLWAWGWNS------NGQLGIGNTVNQTKPATIKDPA 1121
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
F+ V+ + G H++ + DG LW+WG + G LG +T
Sbjct: 1122 NKAQTFKA-VRSSAGQLHSLAIRQDG-NLWAWGDNQYGQLGNNQT 1164
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 31/232 (13%)
Query: 15 LAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVA 71
+A+D G ++ WG N L + +++ S S+ P F +++ GS H +A
Sbjct: 974 MALDADGNVYTWGYNTNGQLGNGTSDS-TSYASNPARLPSQSFQ---ASQISAGSWHALA 1029
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS-PWAVYEVTCGSF 130
+ + G T+ +WG N GQLG G + +P+ ++ S +++ G
Sbjct: 1030 IDTDGNTW--------TWGYNGYGQLGDGSTSDKYKPQTVQNPTDTSQSLKATQISAGVD 1081
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE---LPQYVYLVSVD 187
H +L+ R + W +G NGQLG G T + P +K+ Q V
Sbjct: 1082 H-SLVVDR-------DGSLWAWGWNSNGQLGIGNTVNQTKPATIKDPANKAQTFKAVRSS 1133
Query: 188 CGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI----SPILISG 235
G H+ + G++W+WG + L N + TRN + +P++++G
Sbjct: 1134 AGQLHSLAIRQDGNLWAWGDNQYGQLGNNQTATRNTTPMPVAFDPTPLVLTG 1185
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 24/208 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNC---PLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
Q + AG +LAID G W WG L D ST + + P+
Sbjct: 1016 QASQISAGSWHALAIDTDGNTWTWGYNGYGQLGDGSTSDKYKPQTVQNPTDT--SQSLKA 1073
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII-ETFNQDS 118
+++ G +H + + D ++WG N+NGQLG+G+ ++ +P I + N+
Sbjct: 1074 TQISAGVDHSLVV--------DRDGSLWAWGWNSNGQLGIGNTVNQTKPATIKDPANKAQ 1125
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS-ALVPEQVKEL 177
+ + G H+ + + W +G + GQLG+ T + P V
Sbjct: 1126 TFKAVRSSAGQLHSLAIRQ--------DGNLWAWGDNQYGQLGNNQTATRNTTPMPVAFD 1177
Query: 178 PQYVYLVSVDC-GLFHTSVVSSAGDVWS 204
P + L V G+ TS+ +A WS
Sbjct: 1178 PTPLVLTGVRFGGIAGTSLYRNADGTWS 1205
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 95/240 (39%), Gaps = 52/240 (21%)
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP---KIIETFNQD 117
+V+ G H++A+ S G YSWG+N++GQLG G R P K + +QD
Sbjct: 238 QVSAGRGHILAVASDGN--------LYSWGSNDHGQLGDGTTAERHEPVPVKKPQGVSQD 289
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV--- 174
W + + G + L + +++G GQLG+ TT + PE V
Sbjct: 290 FTWV--QASAGYLFSVGLGS--------DGKLYSWGDNTYGQLGNNTTTAHYTPEPVNLP 339
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS 234
+ P G H + S G+++SWG N+ GD +
Sbjct: 340 QNAPSGFTWKQEAVGSLHALGLGSDGNLYSWGDND-----------HNQLGDGTTTER-- 386
Query: 235 GNGPHGP-KFQDPVQVACGAA---------HTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
H P + + P V G A H++ + D + ++ WG G +GTG D
Sbjct: 387 ----HAPIQVKMPSGVPSGFAWKQMSGWGWHSLALGSDNW-IYGWGANTRGEVGTGSITD 441
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 11/148 (7%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKE---LPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G ++GQLG GTT P VK+ + Q V G + + S G ++SWG
Sbjct: 256 YSWGSNDHGQLGDGTTAERHEPVPVKKPQGVSQDFTWVQASAGYLFSVGLGSDGKLYSWG 315
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
+ G N + T + + P+ + N P G ++ Q A G+ H + + DG L
Sbjct: 316 -DNTYGQLGNNTTTAHYTPE---PVNLPQNAPSGFTWK---QEAVGSLHALGLGSDG-NL 367
Query: 267 WSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
+SWG LG G T + AP V P
Sbjct: 368 YSWGDNDHNQLGDGTTTERHAPIQVKMP 395
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 120/296 (40%), Gaps = 38/296 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHG----HT 58
+ V AG LA+ + G L+ WG+ D G + P PV G T
Sbjct: 235 RFSQVSAGRGHILAVASDGNLYSWGSN---DHGQLGDGTTAERHEPVPVKKPQGVSQDFT 291
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+ + G V L G D YSWG N GQLG + P+ + Q++
Sbjct: 292 WVQASAGYLFSVGL--------GSDGKLYSWGDNTYGQLGNNTTTAHYTPEPVN-LPQNA 342
Query: 119 P--WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK- 175
P + + GS H L + +++G ++ QLG GTT P QVK
Sbjct: 343 PSGFTWKQEAVGSLHALGLGS--------DGNLYSWGDNDHNQLGDGTTTERHAPIQVKM 394
Query: 176 --ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
+P + +H+ + S ++ WG G S+T N+ I+P+ I
Sbjct: 395 PSGVPSGFAWKQMSGWGWHSLALGSDNWIYGWGANT-RGEVGTGSITDNK----ITPVRI 449
Query: 234 SGNGPHG-PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ P G P Q G ++ + DG +++WG G +G +G G T+D + P
Sbjct: 450 AT--PQGVPSNFTWGQFQMGDYYSQAIGSDG-NIYTWGYGGNGNVGNGSTVDVYGP 502
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 60/142 (42%), Gaps = 20/142 (14%)
Query: 70 VALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC-- 127
V+L+S G D YSWGANNNGQLG R P I Q++P + V
Sbjct: 520 VSLLSVASLAIGSDGNLYSWGANNNGQLGDNTTTQRNTP-IRVAAPQNAPTGLTWVQASA 578
Query: 128 ----GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
SF A + +++G NGQLG TT +P +V +P +
Sbjct: 579 GWDNNSFGLA-----------SDGNLYSWGKNANGQLGDNTTNDRHIPGRV-NMPGTTTV 626
Query: 184 VSVDC-GLFHTSVVSSAGDVWS 204
+V G T++ +A WS
Sbjct: 627 TAVSFGGTAGTNITRNADGTWS 648
>gi|4557445|ref|NP_001259.1| RCC1 and BTB domain-containing protein 2 [Homo sapiens]
gi|197099869|ref|NP_001125174.1| RCC1 and BTB domain-containing protein 2 isoform 1 [Pongo abelii]
gi|332241903|ref|XP_003270124.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 1
[Nomascus leucogenys]
gi|397480404|ref|XP_003811474.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 1 [Pan
paniscus]
gi|426375447|ref|XP_004054550.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like isoform 1
[Gorilla gorilla gorilla]
gi|74739686|sp|O95199.1|RCBT2_HUMAN RecName: Full=RCC1 and BTB domain-containing protein 2; AltName:
Full=Chromosome condensation 1-like; Short=CHC1-L;
AltName: Full=RCC1-like G exchanging factor; AltName:
Full=Regulator of chromosome condensation and BTB
domain-containing protein 2
gi|75042250|sp|Q5RCZ7.1|RCBT2_PONAB RecName: Full=RCC1 and BTB domain-containing protein 2; AltName:
Full=Regulator of chromosome condensation and BTB
domain-containing protein 2
gi|3789799|gb|AAC79987.1| RCC1-like G exchanging factor RLG [Homo sapiens]
gi|20810515|gb|AAH29052.1| Regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 2 [Homo sapiens]
gi|32891797|gb|AAP88928.1| chromosome condensation 1-like [Homo sapiens]
gi|55727208|emb|CAH90360.1| hypothetical protein [Pongo abelii]
gi|119629204|gb|EAX08799.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 2, isoform CRA_a [Homo sapiens]
gi|123979830|gb|ABM81744.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 2 [synthetic construct]
gi|124000595|gb|ABM87806.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 2 [synthetic construct]
gi|189055081|dbj|BAG38065.1| unnamed protein product [Homo sapiens]
Length = 551
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 31/239 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + +G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 85 STIEPRRLDSLNGKKIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTT 136
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 137 NHGLVPCHIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 186
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q +V++ CG V G+V+ WG N L
Sbjct: 187 GSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNG------NGQLGLG 240
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 241 NSGNQPTPCRVA--ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGN 293
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 106/259 (40%), Gaps = 57/259 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 154 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNK 205
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + D E W G NGQLG G + + P +V L
Sbjct: 206 --VVVTIACGQMCCMAVV------DTGEVYVW--GYNGNGQLGLGNSGNQPTPCRVAAL- 254
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + V CG HT V++ G V++WG N G L +GN
Sbjct: 255 QGIRVQRVACGYAHTLVLTDEGQVYAWGA--------------NSYGQ-----LGTGNKS 295
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTG 280
+ + PV V AC + HT G ++ WG RG+S +L T
Sbjct: 296 N-QSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTD 354
Query: 281 KTIDFFAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 355 DVFACFATPAVTWRLLSVE 373
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ + G +++WG + G L +S TP V G V
Sbjct: 207 VVTIACGQMCCMAVVDTGEVYVWG------YNGNGQLGLGNSGNQPTPCRVAALQGIRVQ 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + T +D
Sbjct: 261 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPV-TVEKDRII 311
Query: 121 AVYEVTCGSFHTA 133
+ C S HT+
Sbjct: 312 EI--AACHSTHTS 322
>gi|193785714|dbj|BAG51149.1| unnamed protein product [Homo sapiens]
Length = 551
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 31/239 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + +G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 85 STIEPRRLDSLNGKKIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTT 136
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 137 NHGLVPCHIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 186
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q +V++ CG V G+V+ WG N L
Sbjct: 187 GSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNG------NGQLGLG 240
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 241 NSGNQPTPCRVAA--LQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGN 293
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 98/230 (42%), Gaps = 50/230 (21%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 154 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNK 205
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + D E W G NGQLG G + + P +V L
Sbjct: 206 --VVVTIACGQMCCMAVV------DTGEVYVW--GYNGNGQLGLGNSGNQPTPCRVAAL- 254
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + V CG HT V++ G V++WG N G L +GN
Sbjct: 255 QGIRVQRVACGYAHTLVLTDEGQVYAWGA--------------NSYGQ-----LGTGNKS 295
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL 277
+ + PV V AC + HT G ++ WG RG+S +L
Sbjct: 296 N-QSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVIL 344
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ + G +++WG + G L +S TP V G V
Sbjct: 207 VVTIACGQMCCMAVVDTGEVYVWG------YNGNGQLGLGNSGNQPTPCRVAALQGIRVQ 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + T +D
Sbjct: 261 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPV-TVEKDRII 311
Query: 121 AVYEVTCGSFHTA 133
+ C S HT+
Sbjct: 312 EI--AACHSTHTS 322
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 15/136 (11%)
Query: 152 FGLGEN--GQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
F LG N G LG G QS + P ++ L + + +S G H + ++ G+V++WG
Sbjct: 68 FVLGTNCCGCLGLGDVQSTIEPRRLDSLNGKKIACLSYGSGP-HIVLATTEGEVFTWGHN 126
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L + P IS N + + ++VACG+ H++++T DG ++++
Sbjct: 127 ------AYSQLGNGTTNHGLVPCHISTNLSN----KQVIEVACGSYHSLVLTSDG-EVFA 175
Query: 269 WGRGRSGVLGTGKTID 284
WG SG +G+G T++
Sbjct: 176 WGYNNSGQVGSGSTVN 191
>gi|432863737|ref|XP_004070157.1| PREDICTED: E3 ISG15--protein ligase HERC5-like [Oryzias latipes]
Length = 892
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 30/207 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL----VSSFTPSPVWDFHGHTV 59
+ V G ++A+ G ++ WG ++ G L S +P V G +
Sbjct: 119 VSQVACGSRHTVALTKEGQVYTWGQ------NSRGQLGLGKKGCSISSPQCVRSLSGMPL 172
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V+V+ G +H AL +G + WG N+ GQLGLGD + R P +++ N
Sbjct: 173 VQVSAGGDHSFALSVSGSVF--------GWGRNDCGQLGLGDSQDRCTPTSVDSLNLKKT 224
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ ++CG HTA+LT +TFG G+ GQLGH ++++ L P V EL
Sbjct: 225 TS---ISCGKDHTAILTK--------HGTVFTFGSGQFGQLGHNSSRNELRPRLVAEL-W 272
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ + CG +HT V+ ++S+G
Sbjct: 273 GAKVTRIACGRYHTLVLQENNKIYSFG 299
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 96/238 (40%), Gaps = 51/238 (21%)
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
V CG + V+ L G Y+ + ++ P+++E F +
Sbjct: 80 VGCGDDEVILLSEKGSVYR------------------VDVTQALYLPRMLEAFCR---IP 118
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V +V CGS HT LT E +T+G GQLG G ++ Q +
Sbjct: 119 VSQVACGSRHTVALTK--------EGQVYTWGQNSRGQLGLGKKGCSISSPQCVRSLSGM 170
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNG 237
LV V G H+ +S +G V+ WG + GLG ++ D +P +
Sbjct: 171 PLVQVSAGGDHSFALSVSGSVFGWGRNDCGQLGLG----------DSQDRCTPTSVDS-- 218
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV--LW 293
+ ++CG HT ++T G ++++G G+ G LG + + P +V LW
Sbjct: 219 ---LNLKKTTSISCGKDHTAILTKHG-TVFTFGSGQFGQLGHNSSRNELRPRLVAELW 272
>gi|431917308|gb|ELK16841.1| Putative E3 ubiquitin-protein ligase HERC2 [Pteropus alecto]
Length = 883
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 114/243 (46%), Gaps = 38/243 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P V +VK+A S+ H +AL + GE Y SWG + G+LG GD
Sbjct: 482 ALAPQLVQGLVSRNIVKIAAHSDGHHYLALAATGEVY--------SWGCGDGGRLGHGDT 533
Query: 103 ESRLRPKIIETF-NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I F + + V + CGS ++A +T E +T+G G G+LG
Sbjct: 534 VPLEEPKLISAFCGKQAGQRVVHIACGSTYSAAITA--------EGELYTWGRGNYGRLG 585
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
HG+++ +P V L + + ++ V CG T V+ G VWSWG L
Sbjct: 586 HGSSEDEAIPMLVAGL-KGLKVIDVACGSGDAQTLAVTENGQVWSWGDGD------YGKL 638
Query: 220 TRNEAGDAISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
R + +P L+ K Q D V+V CG+ +V +T DG +++SWG+G + L
Sbjct: 639 GRGGSDGCKTPKLVE-------KLQDLDVVKVRCGSQFSVALTKDG-QVYSWGKGDNQRL 690
Query: 278 GTG 280
G G
Sbjct: 691 GHG 693
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 80/202 (39%), Gaps = 28/202 (13%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+G +LA+ G +W WG+ D G TP V VVKV CGS+
Sbjct: 613 SGDAQTLAVTENGQVWSWGD---GDYGKLGRGGSDGCKTPKLVEKLQDLDVVKVRCGSQF 669
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VAL G+ Y SWG +N +LG G E PK++E V +V G
Sbjct: 670 SVALTKDGQVY--------SWGKGDNQRLGHGTEEHVRYPKLLEGLQGKK---VIDVAAG 718
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP--QYVYLVSV 186
S H LT E W G N Q H T A PE LP ++V +
Sbjct: 719 STHCLALTEDS------EVHSW----GSNDQCQHFDTLHATKPEPAA-LPGLDTKHIVGI 767
Query: 187 DCGLFHTSVVSSAGDVWSWGME 208
CG + SS + WS G+
Sbjct: 768 ACGPAQSFAWSSCSE-WSIGLR 788
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 21/149 (14%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQV-----KELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+++G G+ G+LGHG T P+ + K+ Q V V + CG +++ +++ G++++
Sbjct: 518 YSWGCGDGGRLGHGDTVPLEEPKLISAFCGKQAGQRV--VHIACGSTYSAAITAEGELYT 575
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDD 262
WG L + D P+L++G K + VACG+ A T+ VT++
Sbjct: 576 WGRGN------YGRLGHGSSEDEAIPMLVAGL-----KGLKVIDVACGSGDAQTLAVTEN 624
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G ++WSWG G G LG G + P +V
Sbjct: 625 G-QVWSWGDGDYGKLGRGGSDGCKTPKLV 652
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 165 TQSALVPEQVKEL-PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE 223
+ AL P+ V+ L + + ++ H +++ G+V+SWG G L ++ E
Sbjct: 479 SSDALAPQLVQGLVSRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEE 538
Query: 224 AGDAISPILISG-NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
P LIS G Q V +ACG+ ++ +T +G +L++WGRG G LG G +
Sbjct: 539 ------PKLISAFCGKQAG--QRVVHIACGSTYSAAITAEG-ELYTWGRGNYGRLGHGSS 589
Query: 283 IDFFAPAIV 291
D P +V
Sbjct: 590 EDEAIPMLV 598
>gi|355694483|gb|AER99684.1| hect domain and RLD 2 [Mustela putorius furo]
Length = 1082
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 292 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 348
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V +V
Sbjct: 349 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDV 397
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 398 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGV 448
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 449 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 496
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 497 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 544
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 341 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 394
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V VACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 395 VDVACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 445
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 446 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 496
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 497 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 547
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 548 -QGKKVN---RVACGSAHTL 563
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 118/268 (44%), Gaps = 35/268 (13%)
Query: 15 LAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVS 74
L+ +G ++ WG+ GG P+P V++ G + + A+ +
Sbjct: 195 LSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTA 251
Query: 75 AGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTAL 134
G+ Y+ G G+LG+G ES P ++E+ V V G H
Sbjct: 252 DGKL--------YATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKV-AVNSGGKHCLA 302
Query: 135 LTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTS 194
L+ E +++G E+G+LGHG P ++ L + + +V V G H++
Sbjct: 303 LSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHSA 353
Query: 195 VVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA- 253
V++AGD+++WG + L +++ D + P L+ H V VACG+
Sbjct: 354 CVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDVACGSG 402
Query: 254 -AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 403 DAQTLCLTDDD-TVWSWGDGDYGKLGRG 429
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 204 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 241
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 242 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 300
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 301 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 347
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 348 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 386
>gi|297274438|ref|XP_001101212.2| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 3
[Macaca mulatta]
Length = 519
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 31/249 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 85 STIEPRRLDSLSGKKIASLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTT 136
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 137 NHGLVPCQIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 186
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q +V++ CG V G+V+ WG N L
Sbjct: 187 GSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNG------NGQLGLG 240
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 241 SSGNQPTPCRVA--ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNK 294
Query: 283 IDFFAPAIV 291
+ P V
Sbjct: 295 SNQSYPTPV 303
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 107/259 (41%), Gaps = 57/259 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 154 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNK 205
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + D E W G NGQLG G++ + P +V L
Sbjct: 206 --VVVTIACGQMCCMAVV------DTGEVYVW--GYNGNGQLGLGSSGNQPTPCRVAAL- 254
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + V CG HT V++ G V++WG N G L +GN
Sbjct: 255 QGIRVQRVACGYAHTLVLTDEGQVYAWGA--------------NSYGQ-----LGTGNKS 295
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTG 280
+ + PV V AC + HT G ++ WG RG+S +L T
Sbjct: 296 N-QSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTD 354
Query: 281 KTIDFFAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 355 DVFACFATPAVSWRLLSVE 373
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ + G +++WG + G L SS TP V G V
Sbjct: 207 VVTIACGQMCCMAVVDTGEVYVWG------YNGNGQLGLGSSGNQPTPCRVAALQGIRVQ 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + T +D
Sbjct: 261 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPV-TVEKDRII 311
Query: 121 AVYEVTCGSFHTA 133
+ C S HT+
Sbjct: 312 EI--AACHSTHTS 322
>gi|62088666|dbj|BAD92780.1| RCC1-like G exchanging factor RLG variant [Homo sapiens]
Length = 556
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 31/239 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + +G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 90 STIEPRRLDSLNGKKIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTT 141
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 142 NHGLVPCHIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 191
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q +V++ CG V G+V+ WG N L
Sbjct: 192 GSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNG------NGQLGLG 245
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 246 NSGNQPTPCRVA--ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGN 298
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 106/259 (40%), Gaps = 57/259 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 159 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNK 210
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + D E W G NGQLG G + + P +V L
Sbjct: 211 --VVVTIACGQMCCMAVV------DTGEVYVW--GYNGNGQLGLGNSGNQPTPCRVAAL- 259
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + V CG HT V++ G V++WG N G L +GN
Sbjct: 260 QGIRVQRVACGYAHTLVLTDEGQVYAWGA--------------NSYGQ-----LGTGNKS 300
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTG 280
+ + PV V AC + HT G ++ WG RG+S +L T
Sbjct: 301 N-QSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTD 359
Query: 281 KTIDFFAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 360 DVFACFATPAVTWRLLSVE 378
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ + G +++WG + G L +S TP V G V
Sbjct: 212 VVTIACGQMCCMAVVDTGEVYVWG------YNGNGQLGLGNSGNQPTPCRVAALQGIRVQ 265
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + T +D
Sbjct: 266 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPV-TVEKDRII 316
Query: 121 AVYEVTCGSFHTA 133
+ C S HT+
Sbjct: 317 EI--AACHSTHTS 327
>gi|334314433|ref|XP_003340037.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Monodelphis
domestica]
Length = 4790
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 118/453 (26%), Positives = 184/453 (40%), Gaps = 89/453 (19%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLP-----DSSTEGGFSLVSSFTPSPVWDFH 55
+ ++ S K +LA G ++ WG+ +SST+ L+
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQG-------PLQ 509
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G VV V+ G H A+ GE Y+WG + G+LG GD SR P +++ +
Sbjct: 510 GKVVVCVSAGYRHSAAVTEDGE--------LYTWGEGDFGRLGHGDSNSRNIPTLVKDIS 561
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++
Sbjct: 562 N-----VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIE 609
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q +++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 610 AL-QGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEE 661
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
V ++ G +H + ++ D ++++WG G G G + P
Sbjct: 662 LAA-----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------P 705
Query: 296 LTEEFKQDELNTGGLDDEIKTKDLEG--------AEERDEKLSS-------AMEEMKLLQ 340
+T+ K GLD + G A RD ++ + +EE
Sbjct: 706 ITKPKK-----VSGLDGVAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSH 760
Query: 341 SKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRS 394
+ S +ERY ++ I PF P S + F + K N L A S
Sbjct: 761 LR-SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVATS 813
Query: 395 KLVRLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
L R RN+L + D + IQE+V E L
Sbjct: 814 ILGRQAGPLRNLLFRLMDSSVPDEIQEVVIETL 846
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G V++++CG +H +
Sbjct: 4023 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVIQMSCGFKHSAVVT 4079
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ +++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4080 SDGK--------LFTFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4128
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4129 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4180
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D +A GA
Sbjct: 4181 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---IAVGA 4229
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P ++
Sbjct: 4230 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLI 4266
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4170 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 4223
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G+EH +AL S G+ Y +WG+N+ GQLGLG P +I +
Sbjct: 4224 DIAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLITILQGKN-- 4273
Query: 121 AVYEVTCGSFHTALLTHRKRP 141
+ +++ G H+A T P
Sbjct: 4274 -IRQISAGRCHSAAWTASPVP 4293
>gi|330800861|ref|XP_003288451.1| hypothetical protein DICPUDRAFT_79261 [Dictyostelium purpureum]
gi|325081510|gb|EGC35023.1| hypothetical protein DICPUDRAFT_79261 [Dictyostelium purpureum]
Length = 1909
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 122/278 (43%), Gaps = 41/278 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ I V G S A+ G L WG + + G + P + +
Sbjct: 688 LTDIVVVSIGFYHSAAVRANGELLTWG---VGEEGQLGHGDTQNQVEPKVIQSLTSFWIT 744
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+V CG +H + L G+ Y+WG++ GQLGLGD +P + + +
Sbjct: 745 QVQCGEKHTICLTKNGK--------VYTWGSSEYGQLGLGDTTRYCKPMPVTALEK---Y 793
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++ GS H A+LT+ K FG G +G + S +P V L +Y
Sbjct: 794 NVLQIASGSTHCAVLTNSKE--------VLVFGNG--AAMGAASIIS--IPTLVPSL-KY 840
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+++ + CG + T+ +S GDV++WG + LG N + + + +A+
Sbjct: 841 LHIDKLCCGHYSTAAISECGDVYTWGTGQELGHGNNQTESTPKLVEAL------------ 888
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
+ Q Q++CG HT +TD G ++++ G+ G LG
Sbjct: 889 -RNQSIRQISCGGRHTAFLTDSG-RIFTSGKDSFGQLG 924
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 41/205 (20%)
Query: 14 SLAIDNAGALWMWG---NCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHTVVKVACGS 66
++ +D + L WG NC L GF + S TP + +F+ + ++ GS
Sbjct: 591 AIHLDTSRGLMTWGSASNCKL-------GFKVASKEQSQPTPERLPNFNVSDICSISSGS 643
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQ-----LGLGDRESRLRPKIIETFNQDSPWA 121
+ AL G+ Y WG + LG+ E +L P +E+
Sbjct: 644 YYSAALTENGD--------VYMWGRGSVKNPPVPVLGIPQIEDQLLPIKLESLTD----- 690
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ V+ G +H+A + R N L T+G+GE GQLGHG TQ+ + P+ ++ L +
Sbjct: 691 IVVVSIGFYHSAAV----RANGEL----LTWGVGEEGQLGHGDTQNQVEPKVIQSLTSF- 741
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWG 206
++ V CG HT ++ G V++WG
Sbjct: 742 WITQVQCGEKHTICLTKNGKVYTWG 766
>gi|428164001|gb|EKX33045.1| hypothetical protein GUITHDRAFT_148202 [Guillardia theta CCMP2712]
Length = 371
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 109/237 (45%), Gaps = 40/237 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V V+ G H A+V G+ + WG +GQLGLG +S P+ +
Sbjct: 81 VTCVSAGHRHAAAIVGGGDVF--------VWGRGFSGQLGLGTNKSHFTPQPLSF----- 127
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P V ++CG H+ +T R + G G+ GQLG G+ +S L P +V+
Sbjct: 128 PMPVKALSCGGSHSLFITEDGR--------LYATGRGKEGQLGTGSQESVLSPVEVQMPE 179
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILIS 234
+ + +CG + + + +G V+++G + GLG ++T E +++
Sbjct: 180 GSGRVKAAECGKDFSVIATESGQVFTFGSDDYGQLGLGQFARYAMTPKEVA------VLA 233
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G ++ +A G H VT DG KL++WG GRSG LG G T+D P +V
Sbjct: 234 G--------KNVRSIAAGDYHAAAVTSDG-KLYTWGYGRSGQLGNGNTVDVSLPVLV 281
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 131/311 (42%), Gaps = 57/311 (18%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AG + AI G +++WG S G + S FTP P+ F V ++
Sbjct: 81 VTCVSAGHRHAAAIVGGGDVFVWGR---GFSGQLGLGTNKSHFTPQPL-SFP-MPVKALS 135
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H + + ED Y+ G GQLG G +ES L P +E + V
Sbjct: 136 CGGSHSLFIT--------EDGRLYATGRGKEGQLGTGSQESVLSP--VEVQMPEGSGRVK 185
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-TQSALVPEQVKELPQYVY 182
CG + + T +TFG + GQLG G + A+ P++V L
Sbjct: 186 AAECGKDFSVIATE--------SGQVFTFGSDDYGQLGLGQFARYAMTPKEVAVLAGK-N 236
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+ S+ G +H + V+S G +++WG + + L D P+L+ +
Sbjct: 237 VRSIAAGDYHAAAVTSDGKLYTWGYGR------SGQLGNGNTVDVSLPVLVR-------E 283
Query: 243 FQD-PVQ-VACGAAHTVLVTDDGYK---------------LWSWGRGRSGVLGTGKTIDF 285
Q+ VQ VACG HTV V D G K ++ GRGR G LG G ++
Sbjct: 284 LQNLRVQSVACGCDHTVAVIDRGLKEQLMLISSQVLESGEVFVMGRGREGQLGRGDIVE- 342
Query: 286 FAPAIVLWPPL 296
+PA+ PL
Sbjct: 343 -SPAVYRSVPL 352
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 73/170 (42%), Gaps = 28/170 (16%)
Query: 137 HRKRPNDMLESM-CWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
H R LE M CW G LG G T L P++V + V G H +
Sbjct: 45 HSGRLRRFLERMYCW-------GLLGLGETLDVLYPQKVN----LEGVTCVSAGHRHAAA 93
Query: 196 VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ-VACGAA 254
+ GDV+ WG G L N++ P+ F PV+ ++CG +
Sbjct: 94 IVGGGDVFVWGR----GFSGQLGLGTNKSHFTPQPL----------SFPMPVKALSCGGS 139
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDE 304
H++ +T+DG +L++ GRG+ G LGTG +P V P + K E
Sbjct: 140 HSLFITEDG-RLYATGRGKEGQLGTGSQESVLSPVEVQMPEGSGRVKAAE 188
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 108/262 (41%), Gaps = 39/262 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA-C 64
++ GG SL I G L+ G G S S +P V G VK A C
Sbjct: 133 ALSCGGSHSLFITEDGRLYATGR---GKEGQLGTGSQESVLSPVEVQMPEGSGRVKAAEC 189
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRLRPKIIETFNQDSPWAVY 123
G + V +G+ + ++G+++ GQLGLG + PK + + V
Sbjct: 190 GKDFSVIATESGQVF--------TFGSDDYGQLGLGQFARYAMTPKEVAVLAGKN---VR 238
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
+ G +H A +T + +T+G G +GQLG+G T +P V+EL Q + +
Sbjct: 239 SIAAGDYHAAAVTS--------DGKLYTWGYGRSGQLGNGNTVDVSLPVLVREL-QNLRV 289
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA---GDAISPILISGNGPHG 240
SV CG HT V G+++ L L + L E G L G+
Sbjct: 290 QSVACGCDHTVA------VIDRGLKEQLMLISSQVLESGEVFVMGRGREGQLGRGDIVES 343
Query: 241 PKFQDPV-----QVACGAAHTV 257
P V QVACG +HT+
Sbjct: 344 PAVYRSVPLQVQQVACGTSHTL 365
>gi|408500311|ref|YP_006864230.1| putative regulator of chromosome condensation, RCC1 [Bifidobacterium
asteroides PRL2011]
gi|408465135|gb|AFU70664.1| putative regulator of chromosome condensation, RCC1 [Bifidobacterium
asteroides PRL2011]
Length = 1160
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 139/321 (43%), Gaps = 32/321 (9%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPD--SSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
V AG SLA+ + G ++ WGN + + GG+S V P G T V+V
Sbjct: 726 VQVSAGDEQSLAVGSDGYVYAWGNNESGQLGNGSSGGYSTVPLRVIDPNDPRSGLTAVQV 785
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL + G ++WG N G+LG G+ + P + +
Sbjct: 786 SAGYYHSLALDARGN--------IWAWGFNQFGELGNGNNINSAIPTLAQYPRDAGTVTA 837
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT-QSAL-VPEQVKELPQY 180
+V+ G HTA + + W++G GQLG+G SA+ VP Q
Sbjct: 838 IQVSGGFHHTAAIDTKGN--------TWSWGWNWFGQLGNGNNIDSAIPVPVQYPRDAGT 889
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
V + V G H+ ++ + G+ W+WG + LG N S + DA +P+ P
Sbjct: 890 VRAIQVSAGADHSLIIDTKGNTWAWGWNQ-LGELGNGS----SSADA-NPVPGMVKYPEN 943
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEF 300
+QV+ G H++ + +G W+WG SG LG G T PA+V +P
Sbjct: 944 AGTVTAIQVSAGGYHSLAIDKNG-NAWAWGGNDSGELGIGTTSKSEIPALVQYPKNAGAV 1002
Query: 301 KQDELNTG-----GLDDEIKT 316
+++ G G+D E KT
Sbjct: 1003 TTVQVSAGGYHSLGIDKEGKT 1023
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 121/296 (40%), Gaps = 39/296 (13%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF-SLVSSFTPSPVWDFHGHTVVKVA 63
V AG SLA+D G +W WG + S + + P D T ++V+
Sbjct: 783 VQVSAGYYHSLALDARGNIWAWGFNQFGELGNGNNINSAIPTLAQYPR-DAGTVTAIQVS 841
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G H A+ + G T+ SWG N GQLG G+ P ++
Sbjct: 842 GGFHHTAAIDTKGNTW--------SWGWNWFGQLGNGNNIDSAIPVPVQYPRDAGTVRAI 893
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL--VPEQVK--ELPQ 179
+V+ G+ H+ ++ + W +G + G+LG+G++ + VP VK E
Sbjct: 894 QVSAGADHSLIIDTKGN--------TWAWGWNQLGELGNGSSSADANPVPGMVKYPENAG 945
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
V + V G +H+ + G+ W+WG E G+G + + P L+
Sbjct: 946 TVTAIQVSAGGYHSLAIDKNGNAWAWGGNDSGELGIGTTSKSEI----------PALV-- 993
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P VQV+ G H++ + +G K W+WG + G LG G + P V
Sbjct: 994 QYPKNAGAVTTVQVSAGGYHSLGIDKEG-KTWAWGYNQFGQLGNGTISNSSIPTPV 1048
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 95/219 (43%), Gaps = 22/219 (10%)
Query: 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY-EVTCGSFHTALLTHRK 139
G D Y+WG NN GQLG G R +P I++ S Y +V+ G + +
Sbjct: 683 GSDGNAYAWGRNNYGQLGDGTLTQRNKPVIVKKPAGASADFTYVQVSAGDEQSLAVGS-- 740
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQS-ALVPEQV---KELPQYVYLVSVDCGLFHTSV 195
+ + +G E+GQLG+G++ + VP +V + + V V G +H+
Sbjct: 741 ------DGYVYAWGNNESGQLGNGSSGGYSTVPLRVIDPNDPRSGLTAVQVSAGYYHSLA 794
Query: 196 VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
+ + G++W+WG + G N N AI P L P +QV+ G H
Sbjct: 795 LDARGNIWAWGFNQ-FGELGNG----NNINSAI-PTL--AQYPRDAGTVTAIQVSGGFHH 846
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
T + G WSWG G LG G ID P V +P
Sbjct: 847 TAAIDTKG-NTWSWGWNWFGQLGNGNNIDSAIPVPVQYP 884
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 21/190 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+ V AG SL ID G W WG L + S+ + V P + T
Sbjct: 891 RAIQVSAGADHSLIIDTKGNTWAWGWNQLGELGNGSSSADANPVPGMVKYPE-NAGTVTA 949
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++V+ G H +A+ G ++WG N++G+LG+G P +++
Sbjct: 950 IQVSAGGYHSLAIDKNGN--------AWAWGGNDSGELGIGTTSKSEIPALVQYPKNAGA 1001
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK-ELP 178
+V+ G +H+ + E W +G + GQLG+GT ++ +P V L
Sbjct: 1002 VTTVQVSAGGYHSLGIDK--------EGKTWAWGYNQFGQLGNGTISNSSIPTPVAFNLS 1053
Query: 179 QYVYLVSVDC 188
Q + V+ D
Sbjct: 1054 QVISSVTFDT 1063
>gi|55730398|emb|CAH91921.1| hypothetical protein [Pongo abelii]
Length = 527
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 31/239 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + +G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 61 STIEPRRLDSLNGKKIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTT 112
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 113 NHGLVPCHIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 162
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q +V++ CG V G+V+ WG N L
Sbjct: 163 GSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNG------NGQLGLG 216
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 217 NSGNQPTPCRVA--ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGN 269
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 106/259 (40%), Gaps = 57/259 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 130 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNK 181
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + D E W G NGQLG G + + P +V L
Sbjct: 182 --VVVTIACGQMCCMAVV------DTGEVYVW--GYNGNGQLGLGNSGNQPTPCRVAAL- 230
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + V CG HT V++ G V++WG N G L +GN
Sbjct: 231 QGIRVQRVACGYAHTLVLTDEGQVYAWGA--------------NSYGQ-----LGTGNKS 271
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTG 280
+ + PV V AC + HT G ++ WG RG+S +L T
Sbjct: 272 N-QSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTD 330
Query: 281 KTIDFFAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 331 DVFACFATPAVTWRLLSVE 349
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ + G +++WG + G L +S TP V G V
Sbjct: 183 VVTIACGQMCCMAVVDTGEVYVWG------YNGNGQLGLGNSGNQPTPCRVAALQGIRVQ 236
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + T +D
Sbjct: 237 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPV-TVEKDRII 287
Query: 121 AVYEVTCGSFHTA 133
+ C S HT+
Sbjct: 288 EI--AACHSTHTS 298
>gi|426375449|ref|XP_004054551.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like isoform 2
[Gorilla gorilla gorilla]
Length = 527
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 31/239 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + +G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 61 STIEPRRLDSLNGKKIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTT 112
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 113 NHGLVPCHIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 162
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q +V++ CG V G+V+ WG N L
Sbjct: 163 GSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNG------NGQLGLG 216
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 217 NSGNQPTPCRVA--ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGN 269
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 106/259 (40%), Gaps = 57/259 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 130 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNK 181
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + D E W G NGQLG G + + P +V L
Sbjct: 182 --VVVTIACGQMCCMAVV------DTGEVYVW--GYNGNGQLGLGNSGNQPTPCRVAAL- 230
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + V CG HT V++ G V++WG N G L +GN
Sbjct: 231 QGIRVQRVACGYAHTLVLTDEGQVYAWGA--------------NSYGQ-----LGTGNKS 271
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTG 280
+ + PV V AC + HT G ++ WG RG+S +L T
Sbjct: 272 N-QSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTD 330
Query: 281 KTIDFFAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 331 DVFACFATPAVTWRLLSVE 349
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ + G +++WG + G L +S TP V G V
Sbjct: 183 VVTIACGQMCCMAVVDTGEVYVWG------YNGNGQLGLGNSGNQPTPCRVAALQGIRVQ 236
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + T +D
Sbjct: 237 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPV-TVEKDRII 287
Query: 121 AVYEVTCGSFHTA 133
+ C S HT+
Sbjct: 288 EI--AACHSTHTS 298
>gi|301117544|ref|XP_002906500.1| regulator of chromosome condensation (RCC1)-like protein
[Phytophthora infestans T30-4]
gi|262107849|gb|EEY65901.1| regulator of chromosome condensation (RCC1)-like protein
[Phytophthora infestans T30-4]
Length = 4048
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 39/239 (16%)
Query: 49 SPVWDFHGHTV--VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
+PV G + V A G EH++A+ S G +SWG N+ GQLGLG S+
Sbjct: 542 TPVRALSGIAISMVAAANGCEHMLAVASDG--------AVFSWGYNDRGQLGLGSTISKS 593
Query: 107 R-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
P++I++ + + + H+A+++ ++L TFG+ + GQLG T
Sbjct: 594 HTPRMIDSLREK--YHITTAAVSYHHSAVVSSN---GELL-----TFGMNDCGQLGLDHT 643
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTR 221
Q P+ V L V + CGL+HT +S G+V+S+G + GLG
Sbjct: 644 QHQHTPQVVDALSSQV-VTKAACGLYHTVAATSDGEVYSFGKNDYGQLGLG--------- 693
Query: 222 NEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A + +P L+ + G + V V+CG HTV +++ G KL +WGR G LG G
Sbjct: 694 -HARNIKTPALVKTS--LGESDEKIVAVSCGYYHTVTISEKG-KLITWGRNDYGQLGIG 748
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 17/160 (10%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
TP V V K ACG H VA S GE Y S+G N+ GQLGLG +
Sbjct: 648 TPQVVDALSSQVVTKAACGLYHTVAATSDGEVY--------SFGKNDYGQLGLGHARNIK 699
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P +++T +S + V+CG +HT ++ + + T+G + GQLG G+ +
Sbjct: 700 TPALVKTSLGESDEKIVAVSCGYYHTVTISEKGK--------LITWGRNDYGQLGIGSKE 751
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
Q LP + + CG +H+ ++ S G V +G
Sbjct: 752 HK-NSAQFVPLPMSSKIKNASCGCYHSLILMSNGRVMVFG 790
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 107/242 (44%), Gaps = 35/242 (14%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
F + VA G+E + +++ G + + G N +GQ G G E R+ II T
Sbjct: 494 FSAKGIRDVAGGNEVLAVVMNDGGVF--------TCGLNKSGQCGNGTFEERV---IIAT 542
Query: 114 -FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS-ALVP 171
S A+ V + +L + +++G + GQLG G+T S + P
Sbjct: 543 PVRALSGIAISMVAAANGCEHMLAVAS------DGAVFSWGYNDRGQLGLGSTISKSHTP 596
Query: 172 EQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAIS 229
+ L + ++ + H++VVSS G++ ++GM LGL + DA+S
Sbjct: 597 RMIDSLREKYHITTAAVSYHHSAVVSSNGELLTFGMNDCGQLGLDHTQHQHTPQVVDALS 656
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA 289
+++ + ACG HTV T DG +++S+G+ G LG G + PA
Sbjct: 657 SQVVT-------------KAACGLYHTVAATSDG-EVYSFGKNDYGQLGLGHARNIKTPA 702
Query: 290 IV 291
+V
Sbjct: 703 LV 704
>gi|395501384|ref|XP_003755075.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
[Sarcophilus harrisii]
Length = 1049
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 107/239 (44%), Gaps = 34/239 (14%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
F V V CG H V ++ G Y+ G N+ GQ LG +SR +P+ +
Sbjct: 31 FINKKVQDVGCGLRHTVFVLDDG--------TVYTCGCNDLGQ--LGHEKSRKKPEQVVA 80
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-HGTTQSALVPE 172
+ + + V+CG HT L ND + W GL +GQLG GT + VP
Sbjct: 81 LDAQN---IVAVSCGEAHTLAL------NDKGQVYAW--GLDTDGQLGLPGTEEYIRVPR 129
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
+K L + +V + CG +H+ +S +V+SWG K L L R + I +L
Sbjct: 130 NIKSLTD-IQIVQIACGYYHSLALSKGSEVFSWGQNKHGQLGLGFELKRQSSPQLIKSLL 188
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G F QVA G AH+ ++T G ++ WGR + G LG D F P ++
Sbjct: 189 -------GIPF---TQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGLNDENDRFVPNLL 236
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI + G SLA+ ++ WG GF L +P + G +V
Sbjct: 138 QIVQIACGYYHSLALSKGSEVFSWGQN--KHGQLGLGFELKRQSSPQLIKSLLGIPFTQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRFVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 131/295 (44%), Gaps = 46/295 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF--TPSPVWDFHGHTVVK 61
I +V G +LA+++ G ++ WG D+ + G + P + +V+
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG----LDTDGQLGLPGTEEYIRVPRNIKSLTDIQIVQ 141
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPW 120
+ACG H +AL E + SWG N +GQLGLG + + + P++I++ P+
Sbjct: 142 IACGYYHSLALSKGSEVF--------SWGQNKHGQLGLGFELKRQSSPQLIKSL-LGIPF 192
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+V G H+ +LT L + +G + GQLG VP +K L +
Sbjct: 193 T--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRFVPNLLKSL-RS 241
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 242 QKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV------- 288
Query: 241 PKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 --FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 17/139 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVQDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLGTGKTIDF 285
++WG G LG T ++
Sbjct: 106 YAWGLDTDGQLGLPGTEEY 124
>gi|149574281|ref|XP_001514757.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1
[Ornithorhynchus anatinus]
Length = 4866
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 117/453 (25%), Positives = 184/453 (40%), Gaps = 89/453 (19%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLP-----DSSTEGGFSLVSSFTPSPVWDFH 55
+ ++ S K +LA G ++ WG+ +SST+ L+
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQG-------PLQ 509
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G VV V+ G H A+ GE Y+WG + G+LG GD SR P +++ +
Sbjct: 510 GKVVVCVSAGYRHSAAVTEDGE--------LYTWGEGDFGRLGHGDSNSRNIPTLVKDIS 561
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++
Sbjct: 562 N-----VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIE 609
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q +++ V G + ++S G V++WG LG C ++ T A+ P L+
Sbjct: 610 AL-QGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLVEE 661
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
V ++ G +H + ++ D ++++WG G G G + P
Sbjct: 662 LAA-----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------P 705
Query: 296 LTEEFKQDELNTGGLDDEIKTKDLEG--------AEERDEKLSS-------AMEEMKLLQ 340
+T+ K GLD + G A RD ++ + +EE
Sbjct: 706 ITKPKK-----VSGLDGVAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSH 760
Query: 341 SKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRS 394
+ S +ERY ++ I PF P S + F + K N L A S
Sbjct: 761 LR-SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVATS 813
Query: 395 KLVRLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
L R RN+L + D + IQE+V E L
Sbjct: 814 ILGRQAGPLRNLLFRLMDSSVPDEIQEVVIETL 846
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4099 SMALTESGEVFSWGDG---DYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4155
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4156 ADGKMF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4204
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4205 AVSTDG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4256
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4257 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQVPVLA------GVVIED---VAVGA 4305
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ +T G +++WG G LG G T P ++
Sbjct: 4306 EHTLAITSTG-DVYAWGSNSEGQLGLGHTNHVREPTLI 4342
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P V G +
Sbjct: 4246 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQVPVLAGVVIE 4299
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +A+ S G+ Y +WG+N+ GQLGLG P +I +
Sbjct: 4300 DVAVGAEHTLAITSTGDVY--------AWGSNSEGQLGLGHTNHVREPTLITVLQGKN-- 4349
Query: 121 AVYEVTCGSFHTALLT 136
+ +++ G H+A T
Sbjct: 4350 -IRQISAGRCHSAAWT 4364
>gi|327277954|ref|XP_003223728.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
2 [Anolis carolinensis]
Length = 1060
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 112/267 (41%), Gaps = 35/267 (13%)
Query: 26 WGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLV 85
WGN GG P F TV V CG H V ++ G
Sbjct: 4 WGNASFGQLGL-GGIDEEVVLEPRRCNFFLNKTVRDVGCGLRHTVFVLDDG--------T 54
Query: 86 CYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y+ G N+ GQLG +SR RP+ + + + + V+CG HT L ND
Sbjct: 55 VYTCGCNDLGQLG--HEKSRKRPEQVGALDAQN---IVAVSCGEAHTLTL------NDKG 103
Query: 146 ESMCWTFGLGENGQLG-HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+ W G +GQLG GT + VP +K L V +V V CG +H+ +S +V+S
Sbjct: 104 QVYAW--GFAADGQLGLPGTEEYTRVPRNIKSLSD-VQIVQVACGYYHSLALSKGSEVFS 160
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG K L L + + I +L P G Q+A G AH+ +T G
Sbjct: 161 WGQNKHGQLGLGYDLKKQTSPQLIKSLL---GIPFG-------QIAAGGAHSFALTLSG- 209
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ WGR + G LG D + P ++
Sbjct: 210 AVFGWGRNKFGQLGLNDENDRYVPNLL 236
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 100/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ ++ WG G+ L +P + G ++
Sbjct: 138 QIVQVACGYYHSLALSKGSEVFSWGQN--KHGQLGLGYDLKKQTSPQLIKSLLGIPFGQI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H AL +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFALTLSG--------AVFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y ++CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ISCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTGHEINPRKVFELMGNI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSTGRIYSF------GLGGNGQLGMGSTSNRKSPFPVKGN 344
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 128/291 (43%), Gaps = 44/291 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT--PSPVWDFHGHTVVK 61
I +V G +L +++ G ++ WG + + G +T P + +V+
Sbjct: 86 IVAVSCGEAHTLTLNDKGQVYAWGFA----ADGQLGLPGTEEYTRVPRNIKSLSDVQIVQ 141
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPW 120
VACG H +AL E + SWG N +GQLGLG D + + P++I++ P+
Sbjct: 142 VACGYYHSLALSKGSEVF--------SWGQNKHGQLGLGYDLKKQTSPQLIKSL-LGIPF 192
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
++ G H+ LT L + +G + GQLG VP +K L +
Sbjct: 193 G--QIAAGGAHSFALT--------LSGAVFGWGRNKFGQLGLNDENDRYVPNLLKSL-RS 241
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILISGNG 237
+V + CG HT+ ++ G V+++G G G L N G I+P + GN
Sbjct: 242 QKIVYISCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTGHEINPRKVFELMGN- 294
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
Q+ACG HT +++S+G G +G LG G T + +P
Sbjct: 295 -------IVTQIACGRQHTSAFVPSTGRIYSFGLGGNGQLGMGSTSNRKSP 338
>gi|259089405|ref|NP_001158608.1| probable E3 ubiquitin-protein ligase HERC6 isoform 2 [Homo sapiens]
gi|55832764|gb|AAV66895.1| HERC6 splice variant [Homo sapiens]
Length = 986
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 115/246 (46%), Gaps = 31/246 (12%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRL 106
P P+ V V+CG EH +A+ G ++WGA + GQLG+G+ +E
Sbjct: 66 PEPIQALETLIVDLVSCGKEHSLAVCHKGRV--------FAWGAGSEGQLGIGEFKEISF 117
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT- 165
PK I T N + +V+CG +H+ L+ +S +++G +GQLG G
Sbjct: 118 TPKKIMTLND---IKIIQVSCGHYHSLALSK--------DSQVFSWGKNSHGQLGLGKEF 166
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
S P++V+ L + + L V G H+ +S G + WG L + RN
Sbjct: 167 PSQASPQRVRSL-EGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSG---RNVPV 222
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ P+ + G V ++CG AHT ++T DG K++++G RSG LG T +
Sbjct: 223 QSNKPLSVGALKNLG-----VVYISCGDAHTAVLTQDG-KVFTFGDNRSGQLGYSPTPEK 276
Query: 286 FAPAIV 291
P +V
Sbjct: 277 RGPQLV 282
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 123/286 (43%), Gaps = 66/286 (23%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHTVVKV 62
V G SLA+ + G ++ WG + +EG + SFTP + + +++V
Sbjct: 80 VSCGKEHSLAVCHKGRVFAWG------AGSEGQLGIGEFKEISFTPKKIMTLNDIKIIQV 133
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWA 121
+CG H +AL +D +SWG N++GQLGLG S+ P+ + + + P A
Sbjct: 134 SCGHYHSLAL--------SKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSL-EGIPLA 184
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWT-FGLGEN--GQL---GHGTTQSALVPEQVK 175
+V G H+ L S+C T FG G N GQL G + P V
Sbjct: 185 --QVAAGGAHSFAL-----------SLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVG 231
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILI 233
L + + +V + CG HT+V++ G V+++G + LG P
Sbjct: 232 AL-KNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPE--------------- 275
Query: 234 SGNGPHGPKFQDPV-----QVACGAAHTVLVTDDGYKLWSWGRGRS 274
GP+ + + Q+ CG+ HT+ ++ S+G G S
Sbjct: 276 ----KRGPQLVERIDGLVSQIDCGSYHTLAYVHTTGQVVSFGHGPS 317
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 12/134 (8%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ G + WG+ + G V S P V VV ++
Sbjct: 183 LAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYIS 242
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H L G+ +++G N +GQLG + P+++E + V
Sbjct: 243 CGDAHTAVLTQDGKV--------FTFGDNRSGQLGYSPTPEKRGPQLVERID----GLVS 290
Query: 124 EVTCGSFHTALLTH 137
++ CGS+HT H
Sbjct: 291 QIDCGSYHTLAYVH 304
>gi|413951018|gb|AFW83667.1| putative regulator of chromosome condensation (RCC1) family protein
[Zea mays]
Length = 1054
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 132/294 (44%), Gaps = 40/294 (13%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF----SLVSSFTPSPVW-DFHGHTVVK 61
+ G + AI +G L+ WG D S G + S + P V G V+
Sbjct: 313 ISCGEFHTCAISASGDLFNWG-----DGSYRAGLLGYDTGASHWLPKRVSGPLEGLQVLS 367
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VACGS H + S G Y++G G LG G+RES PK +E N +
Sbjct: 368 VACGSWHSALITSTGR--------LYTFGDGKFGALGHGNRESAAYPKEVEALNG---FR 416
Query: 122 VYEVTCGSFHTALLTHRKRPNDM--LESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+V CG +H+A + M + +T+G G+ +LG G ++ L+P ++ L +
Sbjct: 417 TVKVACGVWHSAAIVEASVQTGMNVVSKKLYTWGDGDKNRLGQGDKEARLIPTCLQALLE 476
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ + + CG T ++++G V++ +G N L N D P L+
Sbjct: 477 HNFH-QLGCGQNMTVALATSGHVYT------MGSSDNGQLG-NPKSDGKHPCLVKD---- 524
Query: 240 GPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + + +++CGAAH ++T ++++WG G +G LG G D P IV
Sbjct: 525 --KLANELVEEISCGAAHVAVLTSRS-EVYTWGLGANGRLGHGDLNDKKTPTIV 575
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 128/301 (42%), Gaps = 46/301 (15%)
Query: 17 IDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVAL 72
I++ G +++WG + D T S V P P+ V ++ CGS HV
Sbjct: 212 IESLGDVYVWGEVWTDAAPSDGHTSSSCSKVDVLIPKPLESDVVLDVNQIVCGSRHVALT 271
Query: 73 VSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHT 132
GE + +WG G+LG G RPK++E+ S V ++CG FHT
Sbjct: 272 TRQGEVF--------TWGEELGGRLGHGTDTDISRPKLVESL---SVTIVDFISCGEFHT 320
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFH 192
++ D+ W G G LG+ T S +P++V + + ++SV CG +H
Sbjct: 321 CAIS---ASGDLFN---WGDGSYRAGLLGYDTGASHWLPKRVSGPLEGLQVLSVACGSWH 374
Query: 193 TSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
+++++S G ++++G K LG S + +A+ NG F+ V+VA
Sbjct: 375 SALITSTGRLYTFGDGKFGALGHGNRESAAYPKEVEAL-------NG-----FR-TVKVA 421
Query: 251 CGAAHTVLVTDDGY---------KLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFK 301
CG H+ + + KL++WG G LG G P L L F
Sbjct: 422 CGVWHSAAIVEASVQTGMNVVSKKLYTWGDGDKNRLGQGDKEARLIP-TCLQALLEHNFH 480
Query: 302 Q 302
Q
Sbjct: 481 Q 481
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 113/260 (43%), Gaps = 30/260 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
Q+ SV G S I + G L+ +G+ G + S+ P V +G VKV
Sbjct: 364 QVLSVACGSWHSALITSTGRLYTFGDGKF---GALGHGNRESAAYPKEVEALNGFRTVKV 420
Query: 63 ACGSEHVVALVSAGETYKGEDLVC---YSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
ACG H A+V A G ++V Y+WG + +LG GD+E+RL P ++ + +
Sbjct: 421 ACGVWHSAAIVEAS-VQTGMNVVSKKLYTWGDGDKNRLGQGDKEARLIPTCLQALLEHN- 478
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+++ CG T L +T G +NGQLG+ + P VK+
Sbjct: 479 --FHQLGCGQNMTVALA--------TSGHVYTMGSSDNGQLGNPKSDGKH-PCLVKDKLA 527
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ + CG H +V++S +V++W GL N L + D +P ++
Sbjct: 528 NELVEEISCGAAHVAVLTSRSEVYTW------GLGANGRLGHGDLNDKKTPTIV-----E 576
Query: 240 GPKFQDPVQVACGAAHTVLV 259
K + ++CG+ T +
Sbjct: 577 ALKDRHVKSISCGSNFTTCI 596
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 23/134 (17%)
Query: 10 GGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK-VACG 65
G M++A+ +G ++ G N L + ++G P V D + +V+ ++CG
Sbjct: 485 GQNMTVALATSGHVYTMGSSDNGQLGNPKSDGKH-------PCLVKDKLANELVEEISCG 537
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
+ HV L S E Y +WG NG+LG GD + P I+E V +
Sbjct: 538 AAHVAVLTSRSEVY--------TWGLGANGRLGHGDLNDKKTPTIVEALKDRH---VKSI 586
Query: 126 TCGS-FHTALLTHR 138
+CGS F T + HR
Sbjct: 587 SCGSNFTTCICIHR 600
>gi|327277952|ref|XP_003223727.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
1 [Anolis carolinensis]
Length = 1052
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 112/267 (41%), Gaps = 35/267 (13%)
Query: 26 WGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLV 85
WGN GG P F TV V CG H V ++ G
Sbjct: 4 WGNASFGQLGL-GGIDEEVVLEPRRCNFFLNKTVRDVGCGLRHTVFVLDDG--------T 54
Query: 86 CYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y+ G N+ GQLG +SR RP+ + + + + V+CG HT L ND
Sbjct: 55 VYTCGCNDLGQLG--HEKSRKRPEQVGALDAQN---IVAVSCGEAHTLTL------NDKG 103
Query: 146 ESMCWTFGLGENGQLG-HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+ W G +GQLG GT + VP +K L V +V V CG +H+ +S +V+S
Sbjct: 104 QVYAW--GFAADGQLGLPGTEEYTRVPRNIKSLSD-VQIVQVACGYYHSLALSKGSEVFS 160
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG K L L + + I +L P G Q+A G AH+ +T G
Sbjct: 161 WGQNKHGQLGLGYDLKKQTSPQLIKSLL---GIPFG-------QIAAGGAHSFALTLSG- 209
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ WGR + G LG D + P ++
Sbjct: 210 AVFGWGRNKFGQLGLNDENDRYVPNLL 236
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 100/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ ++ WG G+ L +P + G ++
Sbjct: 138 QIVQVACGYYHSLALSKGSEVFSWGQN--KHGQLGLGYDLKKQTSPQLIKSLLGIPFGQI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H AL +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFALTLSG--------AVFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y ++CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ISCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTGHEINPRKVFELMGNI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSTGRIYSF------GLGGNGQLGMGSTSNRKSPFPVKGN 344
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 128/291 (43%), Gaps = 44/291 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT--PSPVWDFHGHTVVK 61
I +V G +L +++ G ++ WG + + G +T P + +V+
Sbjct: 86 IVAVSCGEAHTLTLNDKGQVYAWGFA----ADGQLGLPGTEEYTRVPRNIKSLSDVQIVQ 141
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPW 120
VACG H +AL E + SWG N +GQLGLG D + + P++I++ P+
Sbjct: 142 VACGYYHSLALSKGSEVF--------SWGQNKHGQLGLGYDLKKQTSPQLIKSL-LGIPF 192
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
++ G H+ LT L + +G + GQLG VP +K L +
Sbjct: 193 G--QIAAGGAHSFALT--------LSGAVFGWGRNKFGQLGLNDENDRYVPNLLKSL-RS 241
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILISGNG 237
+V + CG HT+ ++ G V+++G G G L N G I+P + GN
Sbjct: 242 QKIVYISCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTGHEINPRKVFELMGN- 294
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
Q+ACG HT +++S+G G +G LG G T + +P
Sbjct: 295 -------IVTQIACGRQHTSAFVPSTGRIYSFGLGGNGQLGMGSTSNRKSP 338
>gi|207080016|ref|NP_001128757.1| RCC1 and BTB domain-containing protein 2 isoform 2 [Pongo abelii]
gi|55726291|emb|CAH89917.1| hypothetical protein [Pongo abelii]
Length = 527
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 31/239 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + +G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 61 STIEPRRLDSLNGKKIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTT 112
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 113 NHGLVPCHIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 162
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q +V++ CG V G+V+ WG N L
Sbjct: 163 GSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNG------NGQLGLG 216
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 217 NSGNQPTPCRVA--ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGN 269
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 106/259 (40%), Gaps = 57/259 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 130 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNK 181
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + D E W G NGQLG G + + P +V L
Sbjct: 182 --VVVTIACGQMCCMAVV------DTGEVYVW--GYNGNGQLGLGNSGNQPTPCRVAAL- 230
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + V CG HT V++ G V++WG N G L +GN
Sbjct: 231 QGIRVQRVACGYAHTLVLTDEGQVYAWGA--------------NSYGQ-----LGTGNKS 271
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTG 280
+ + PV V AC + HT G ++ WG RG+S +L T
Sbjct: 272 N-QSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTD 330
Query: 281 KTIDFFAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 331 DVFACFATPAVTWRLLSVE 349
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ + G +++WG + G L +S TP V G V
Sbjct: 183 VVTIACGQMCCMAVVDTGEVYVWG------YNGNGQLGLGNSGNQPTPCRVAALQGIRVQ 236
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + T +D
Sbjct: 237 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPV-TVEKDRII 287
Query: 121 AVYEVTCGSFHTA 133
+ C S HT+
Sbjct: 288 EI--AACHSTHTS 298
>gi|395501382|ref|XP_003755074.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
[Sarcophilus harrisii]
Length = 1057
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 107/239 (44%), Gaps = 34/239 (14%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
F V V CG H V ++ G Y+ G N+ GQ LG +SR +P+ +
Sbjct: 31 FINKKVQDVGCGLRHTVFVLDDG--------TVYTCGCNDLGQ--LGHEKSRKKPEQVVA 80
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-HGTTQSALVPE 172
+ + + V+CG HT L ND + W GL +GQLG GT + VP
Sbjct: 81 LDAQN---IVAVSCGEAHTLAL------NDKGQVYAW--GLDTDGQLGLPGTEEYIRVPR 129
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
+K L + +V + CG +H+ +S +V+SWG K L L R + I +L
Sbjct: 130 NIKSLTD-IQIVQIACGYYHSLALSKGSEVFSWGQNKHGQLGLGFELKRQSSPQLIKSLL 188
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G F QVA G AH+ ++T G ++ WGR + G LG D F P ++
Sbjct: 189 -------GIPF---TQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGLNDENDRFVPNLL 236
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI + G SLA+ ++ WG GF L +P + G +V
Sbjct: 138 QIVQIACGYYHSLALSKGSEVFSWGQN--KHGQLGLGFELKRQSSPQLIKSLLGIPFTQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRFVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 131/295 (44%), Gaps = 46/295 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF--TPSPVWDFHGHTVVK 61
I +V G +LA+++ G ++ WG D+ + G + P + +V+
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG----LDTDGQLGLPGTEEYIRVPRNIKSLTDIQIVQ 141
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPW 120
+ACG H +AL E + SWG N +GQLGLG + + + P++I++ P+
Sbjct: 142 IACGYYHSLALSKGSEVF--------SWGQNKHGQLGLGFELKRQSSPQLIKSL-LGIPF 192
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+V G H+ +LT L + +G + GQLG VP +K L +
Sbjct: 193 T--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRFVPNLLKSL-RS 241
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 242 QKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV------- 288
Query: 241 PKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 --FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 17/139 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVQDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLGTGKTIDF 285
++WG G LG T ++
Sbjct: 106 YAWGLDTDGQLGLPGTEEY 124
>gi|340505900|gb|EGR32173.1| regulator of chromosome condensation, putative [Ichthyophthirius
multifiliis]
Length = 427
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 136/307 (44%), Gaps = 54/307 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHTVV 60
I VKA +S+A+ G ++ WG + G ++SF P V +
Sbjct: 78 IIKVKANKSVSMALSQDGKVYTWG----KNKGGILGHYDITSFNMIQPELVEKLENIQIK 133
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+++CG H+ A+ GE Y+WG ++G+LG + + + I+ NQ+ +
Sbjct: 134 QISCGPFHMAAISQDGE--------LYTWGNKDHGKLGH-EIQQKSNKVEIKRGNQNYDY 184
Query: 121 A----------------VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
A +V+CG T +LT ++FG GQLG+ +
Sbjct: 185 AEGSMLPTKVQSLNGIKCKQVSCGGQFTVVLTENGE--------VYSFGNSMKGQLGYQS 236
Query: 165 TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA 224
++ Q K++P ++++DCG ++ VSS+G V++WG + L N++
Sbjct: 237 EETGNF--QPKKIPDLQNIINIDCGQQFSAAVSSSGKVYTWGNN------DHGQLGNNQS 288
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
P ++G G G K + ++CG ++++G KL++WG G G LG D
Sbjct: 289 IYQARPNQVTGFG--GNKI---INISCGDNFIAALSNEG-KLFTWGYGNDGQLGHSNRND 342
Query: 285 FFAPAIV 291
+AP +
Sbjct: 343 LYAPKQI 349
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 115/260 (44%), Gaps = 42/260 (16%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNC---PLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
V GG ++ + G ++ +GN L S E G +F P + D ++ +
Sbjct: 205 VSCGGQFTVVLTENGEVYSFGNSMKGQLGYQSEETG-----NFQPKKIPDLQ--NIINID 257
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG + A+ S+G+ Y +WG N++GQLG + RP + F + +
Sbjct: 258 CGQQFSAAVSSSGKVY--------TWGNNDHGQLGNNQSIYQARPNQVTGFGGNK---II 306
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
++CG A L++ E +T+G G +GQLGH P+Q++ + +
Sbjct: 307 NISCGDNFIAALSN--------EGKLFTWGYGNDGQLGHSNRNDLYAPKQIEFKEK---I 355
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGM--EKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ VDCG HT+ ++ ++ +G E LG+ N +EA +P ++
Sbjct: 356 IKVDCGGTHTAFLTQNNQLYLFGRGNEGQLGIGEN---IESEAAIRTTPKIV-----EFF 407
Query: 242 KFQDPVQVACGAAHTVLVTD 261
K V V CG +T+ +T+
Sbjct: 408 KKMKVVDVTCGGEYTLAITE 427
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 34/209 (16%)
Query: 85 VCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDM 144
Y+WG N GQLGL + ++ P+ +E S + +V + L+
Sbjct: 44 TVYAWGYGNFGQLGLANENNQYSPQEVEKL---SDRNIIKVKANKSVSMALSQ------- 93
Query: 145 LESMCWTFGLGENGQLGHG--TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV 202
+ +T+G + G LGH T+ + + PE V++L + + + CG FH + +S G++
Sbjct: 94 -DGKVYTWGKNKGGILGHYDITSFNMIQPELVEKLEN-IQIKQISCGPFHMAAISQDGEL 151
Query: 203 WSWGMEKGLGLCPNASLTRNEA-------------GDAISPILISGNGPHGPKFQDPVQV 249
++WG + L N+ G + + S NG QV
Sbjct: 152 YTWGNKDHGKLGHEIQQKSNKVEIKRGNQNYDYAEGSMLPTKVQSLNGIKCK------QV 205
Query: 250 ACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
+CG TV++T++G +++S+G G LG
Sbjct: 206 SCGGQFTVVLTENG-EVYSFGNSMKGQLG 233
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
++I ++ G A+ N G L+ WG + G + + P + +F ++K
Sbjct: 303 NKIINISCGDNFIAALSNEGKLFTWG---YGNDGQLGHSNRNDLYAPKQI-EFK-EKIIK 357
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ES----RLRPKIIETFNQ 116
V CG H L + Y +G N GQLG+G+ ES R PKI+E F +
Sbjct: 358 VDCGGTHTAFLTQNNQ--------LYLFGRGNEGQLGIGENIESEAAIRTTPKIVEFFKK 409
Query: 117 DSPWAVYEVTCGSFHTALLT 136
V +VTCG +T +T
Sbjct: 410 ---MKVVDVTCGGEYTLAIT 426
>gi|340378681|ref|XP_003387856.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like
[Amphimedon queenslandica]
Length = 599
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 116/275 (42%), Gaps = 36/275 (13%)
Query: 14 SLAIDNAGALWMWGNC-PLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVAL 72
S I G L+ WG P + S+ P V +G +V+VACG H + +
Sbjct: 260 SAVISEDGNLYTWGKAGPFLGYMDD---SVTKQTKPRLVDALYGTRIVQVACGRSHTLVI 316
Query: 73 VSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHT 132
G Y S+G N G+LG G ++ +P ++ ++ +V+CG H+
Sbjct: 317 DEEGRVY--------SFGINKFGELGQGHDKAITKPTMVPNL-----VSICKVSCGRHHS 363
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFH 192
A + + + + +G G GQLG G +S P V L V CG H
Sbjct: 364 AAIDE--------DGVLFMWGWGARGQLGQGEPKSLFSPTPVNGFNDQP-LEDVSCGYGH 414
Query: 193 TSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACG 252
T+ +++ G + WG + C S E +L SG P Q+ CG
Sbjct: 415 TAAITANGVAYCWG-DNASSQCGVPSSVYGELSSPRGIVLPSG--------IRPTQINCG 465
Query: 253 AAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
A TVLVT G +L++WG SG LG G+ F+
Sbjct: 466 ANFTVLVTSIG-QLFTWGCNMSGQLGNGEAKKTFS 499
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 118/282 (41%), Gaps = 45/282 (15%)
Query: 15 LAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVS 74
L DN+ L++WG D G F P+ V G V +ACG H +AL S
Sbjct: 156 LLKDNSCDLYLWGG---GDRGRLGHKDDKPRFLPNVVESLLGQNVTMIACGGSHTIALNS 212
Query: 75 AGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTAL 134
G+ +SWGA G LG G+ R P +I+ +D V V C H+A+
Sbjct: 213 KGQV--------FSWGAGPQGCLGHGNLRDRYSPLMIDGPLRDV--NVVHVACYENHSAV 262
Query: 135 LTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY---LVSVDCGLF 191
++ + G+ G G ++ + L +Y +V V CG
Sbjct: 263 ISEDGN----------LYTWGKAGPF-LGYMDDSVTKQTKPRLVDALYGTRIVQVACGRS 311
Query: 192 HTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV 249
HT V+ G V+S+G+ K LG + ++T+ P ++ P +V
Sbjct: 312 HTLVIDEEGRVYSFGINKFGELGQGHDKAITK--------PTMV-------PNLVSICKV 356
Query: 250 ACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+CG H+ + +DG L+ WG G G LG G+ F+P V
Sbjct: 357 SCGRHHSAAIDEDGV-LFMWGWGARGQLGQGEPKSLFSPTPV 397
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 29/208 (13%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
++I V G +L ID G ++ +G + +G ++ T P + ++ K
Sbjct: 301 TRIVQVACGRSHTLVIDEEGRVYSFGINKFGELG-QGHDKAITKPTMVP----NLVSICK 355
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
V+CG H A+ ED V + WG GQLG G+ +S P + FN D P
Sbjct: 356 VSCGRHHSAAI--------DEDGVLFMWGWGARGQLGQGEPKSLFSPTPVNGFN-DQP-- 404
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA---LVPEQVKELP 178
+ +V+CG HTA +T + CW G+N G S L + LP
Sbjct: 405 LEDVSCGYGHTAAITANG------VAYCW----GDNASSQCGVPSSVYGELSSPRGIVLP 454
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ ++CG T +V+S G +++WG
Sbjct: 455 SGIRPTQINCGANFTVLVTSIGQLFTWG 482
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
Q+ +ACG +HT+ + G +++SWG G G LG G D ++P ++ P
Sbjct: 195 QNVTMIACGGSHTIALNSKG-QVFSWGAGPQGCLGHGNLRDRYSPLMIDGP 244
>gi|148922863|ref|NP_001092233.1| uncharacterized protein LOC100073325 [Danio rerio]
gi|146218416|gb|AAI39898.1| Zgc:163136 protein [Danio rerio]
Length = 994
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 120/260 (46%), Gaps = 32/260 (12%)
Query: 50 PVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-P 108
P+ V+++ACG +H +AL + G + + WG N GQLGL ++ + P
Sbjct: 109 PLKGLDNRQVIQIACGDQHSMALSNDG--------LLFVWGENALGQLGLRKEQAGTQSP 160
Query: 109 KIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA 168
+ +++ + V +++ G H+ +L+ L + + +G GQLG G T
Sbjct: 161 QHLQSLCE---IPVAQISAGGNHSFVLS--------LSGVVFGWGSNSAGQLGLGDTTDR 209
Query: 169 LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
+P VK L VS+ CG HT+ +S G V+++G G G L N D
Sbjct: 210 FIPTIVKSLSGK-KTVSISCGGEHTATLSKGGTVFTFG-SGGFG-----QLGHNSLKDEH 262
Query: 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
P L++ G K QV CG HT++ D +++S+G G G LG G+ + P
Sbjct: 263 HPRLVAE--LWGSKVS---QVTCGRHHTLVFEDSSNRIYSFGCGMQGQLGNGEQVKQSVP 317
Query: 289 AIVLWPPLTEEFKQDELNTG 308
VL P EF ++L G
Sbjct: 318 LPVLLPTECTEFTMEKLIAG 337
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 79/193 (40%), Gaps = 39/193 (20%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL---VSSFTPSPVWDFHGHTVV 60
+ + AGG S + +G ++ WG S++ G L F P+ V G V
Sbjct: 171 VAQISAGGNHSFVLSLSGVVFGWG------SNSAGQLGLGDTTDRFIPTIVKSLSGKKTV 224
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++CG EH L G +++G+ GQLG + P+++ W
Sbjct: 225 SISCGGEHTATLSKGG--------TVFTFGSGGFGQLGHNSLKDEHHPRLVAEL-----W 271
Query: 121 A--VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V +VTCG HT L N + ++FG G GQLG+G EQVK+
Sbjct: 272 GSKVSQVTCGRHHT--LVFEDSSNRI-----YSFGCGMQGQLGNG--------EQVKQSV 316
Query: 179 QYVYLVSVDCGLF 191
L+ +C F
Sbjct: 317 PLPVLLPTECTEF 329
>gi|30682540|ref|NP_680156.2| regulator of chromosome condensation repeat-containing protein
[Arabidopsis thaliana]
gi|26452773|dbj|BAC43467.1| unknown protein [Arabidopsis thaliana]
gi|28973187|gb|AAO63918.1| putative UVB-resistance protein UVR8 [Arabidopsis thaliana]
gi|332003957|gb|AED91340.1| regulator of chromosome condensation repeat-containing protein
[Arabidopsis thaliana]
Length = 434
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 125/303 (41%), Gaps = 44/303 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHTVV 60
I + AG S AI G L+MWG +SS + G ++ P+ V HG T+
Sbjct: 136 ILHISAGYYHSAAITVDGELYMWGK----NSSGQLGLGKKAARVVRVPTKVEALHGITIQ 191
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQL-GLGDRESRLRPKIIETFNQDSP 119
VA GSEH VA+ GE G + L G+ S P++I+
Sbjct: 192 SVALGSEHSVAVTDGGEVLSWGGGGSGRLGHGHQSSLFGILRSNSEFTPRLIKELEG--- 248
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V V G H+A + FG ++G G ++A P + E+P
Sbjct: 249 IKVTNVAAGLLHSACTDENGSA--------FMFGEKSINKMGFGGVRNATTPSIISEVP- 299
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
Y V CG +HT VV+ G++++WG + N L + + SP+ +
Sbjct: 300 --YAEEVACGGYHTCVVTRGGELYTWGSNE------NGCLGTDSTYVSHSPVRV-----E 346
Query: 240 GPKFQDPV-QVACGAAHTVLVTDDGYKLWSW----------GRGRSGVLGTGKTIDFFAP 288
GP + V QV+CG HT ++D+ W W G G LG G +D+ P
Sbjct: 347 GPFLESTVSQVSCGWKHTAAISDNNVFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYARP 406
Query: 289 AIV 291
A+V
Sbjct: 407 AMV 409
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 105/251 (41%), Gaps = 37/251 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR--PKIIETFNQ 116
++ ++ G H A+ GE Y WG N++GQLGLG + +R+ P +E +
Sbjct: 136 ILHISAGYYHSAAITVDGELYM--------WGKNSSGQLGLGKKAARVVRVPTKVEALHG 187
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQL-GHGTTQSALVPEQVK 175
+ + V GS H+ +T G G L G + S P +K
Sbjct: 188 IT---IQSVALGSEHSVAVTDGGEVLSWGGGGSGRLGHGHQSSLFGILRSNSEFTPRLIK 244
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPI 231
EL + + + +V GL H++ G + +G + G G NA+ +P
Sbjct: 245 EL-EGIKVTNVAAGLLHSACTDENGSAFMFGEKSINKMGFGGVRNAT----------TPS 293
Query: 232 LISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+IS + +VACG HT +VT G +L++WG +G LGT T +P V
Sbjct: 294 IIS-------EVPYAEEVACGGYHTCVVTRGG-ELYTWGSNENGCLGTDSTYVSHSPVRV 345
Query: 292 LWPPLTEEFKQ 302
P L Q
Sbjct: 346 EGPFLESTVSQ 356
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 27/178 (15%)
Query: 89 WGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESM 148
WG+ + G+LGLG+ +S+ P + + S + V CG HT LT +R
Sbjct: 54 WGSGDYGRLGLGNLDSQWTPAVCSALSDHS---ITAVACGGAHTLFLTETRR-------- 102
Query: 149 CWTFGLGENGQLGHGTTQS-ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM 207
+ GL + GQLG +S A+ P +V L + + +S G +H++ ++ G+++ WG
Sbjct: 103 VFATGLNDCGQLGVSDVKSHAMDPLEVSGLDKDILHISA--GYYHSAAITVDGELYMWGK 160
Query: 208 EKG--LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
LGL A+ + + HG Q VA G+ H+V VTD G
Sbjct: 161 NSSGQLGLGKKAA--------RVVRVPTKVEALHGITIQ---SVALGSEHSVAVTDGG 207
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 27/181 (14%)
Query: 25 MWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDL 84
MWG+ D G +L S +TP+ H++ VACG H + L E
Sbjct: 53 MWGS---GDYGRLGLGNLDSQWTPAVCSALSDHSITAVACGGAHTLFLT--------ETR 101
Query: 85 VCYSWGANNNGQLGLGDRESR-LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPND 143
++ G N+ GQLG+ D +S + P + ++D + ++ G +H+A +T
Sbjct: 102 RVFATGLNDCGQLGVSDVKSHAMDPLEVSGLDKD----ILHISAGYYHSAAIT------- 150
Query: 144 MLESMCWTFGLGENGQLGHGTTQSAL--VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
++ + +G +GQLG G + + VP +V+ L + + SV G H+ V+ G+
Sbjct: 151 -VDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEAL-HGITIQSVALGSEHSVAVTDGGE 208
Query: 202 V 202
V
Sbjct: 209 V 209
>gi|403303294|ref|XP_003942271.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 2
[Saimiri boliviensis boliviensis]
Length = 556
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 106/225 (47%), Gaps = 34/225 (15%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
K+AC S H+V + GE + +WG N QLG G L P I T
Sbjct: 104 KIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTTNHGLVPCHIST--N 153
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V EV CGS+H+ +LT E W G +GQ+G G+T + +P +V
Sbjct: 154 LSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGSGSTINQPIPRRVTG 205
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q +V++ CG V +G+V+ WG N L +G+ +P ++
Sbjct: 206 CLQNKVVVTIACGQMCCMAVVDSGEVYVWGYNG------NGQLGLGNSGNQPTPCRVA-- 257
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 258 ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGN 298
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 106/259 (40%), Gaps = 57/259 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 159 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTINQPIPRRVTGCLQNK 210
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + D E W G NGQLG G + + P +V L
Sbjct: 211 --VVVTIACGQMCCMAVV------DSGEVYVW--GYNGNGQLGLGNSGNQPTPCRVAAL- 259
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + V CG HT V++ G V++WG N G L +GN
Sbjct: 260 QGIRVQRVACGYAHTLVLTDEGQVYAWGA--------------NSYGQ-----LGTGNKS 300
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTG 280
+ + PV V AC + HT G ++ WG RG+S +L T
Sbjct: 301 N-QSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTD 359
Query: 281 KTIDFFAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 360 DVFACFATPAVTWRLLSVE 378
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ ++G +++WG + G L +S TP V G V
Sbjct: 212 VVTIACGQMCCMAVVDSGEVYVWG------YNGNGQLGLGNSGNQPTPCRVAALQGIRVQ 265
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + T +D
Sbjct: 266 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPV-TVEKDRII 316
Query: 121 AVYEVTCGSFHTA 133
+ C S HT+
Sbjct: 317 EI--AACHSTHTS 327
>gi|332233496|ref|XP_003265938.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 isoform 1
[Nomascus leucogenys]
Length = 1020
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 115/246 (46%), Gaps = 31/246 (12%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRL 106
P P+ V V+CG EH +A+ G ++WGA + GQLG+G+ +E
Sbjct: 66 PEPIQALETLNVDLVSCGKEHSLAVCHKGRV--------FAWGAGSEGQLGIGELKEISF 117
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT- 165
PK I T N + +V+CG +H+ L+ +S +++G +GQLG G
Sbjct: 118 TPKKITTLNG---IKIIQVSCGHYHSLALSK--------DSQVFSWGKNSHGQLGLGKEF 166
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
S P++V+ L + + L V G H+ +S G + WG L A RN
Sbjct: 167 PSQASPQRVRSL-EGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQL---ALSGRNVPV 222
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ P+ + G V ++CGA HT ++T DG K++++G RSG LG T +
Sbjct: 223 QSNKPLSVGALKNLG-----VVYISCGAEHTAVLTQDG-KVFTFGDNRSGQLGYSPTPEK 276
Query: 286 FAPAIV 291
P +V
Sbjct: 277 RGPQLV 282
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 127/290 (43%), Gaps = 63/290 (21%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHTVVKV 62
V G SLA+ + G ++ WG + +EG + SFTP + +G +++V
Sbjct: 80 VSCGKEHSLAVCHKGRVFAWG------AGSEGQLGIGELKEISFTPKKITTLNGIKIIQV 133
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWA 121
+CG H +AL +D +SWG N++GQLGLG S+ P+ + + + P A
Sbjct: 134 SCGHYHSLAL--------SKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSL-EGIPLA 184
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWT-FGLGEN--GQL---GHGTTQSALVPEQVK 175
+V G H+ L S+C T FG G N GQL G + P V
Sbjct: 185 --QVAAGGAHSFAL-----------SLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVG 231
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILI 233
L + + +V + CG HT+V++ G V+++G + LG P
Sbjct: 232 AL-KNLGVVYISCGAEHTAVLTQDGKVFTFGDNRSGQLGYSPTP---------------- 274
Query: 234 SGNGPHGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
GP + D + QV CG+ HT+ ++ S+G G S TGK
Sbjct: 275 EKRGPQLVEIIDGLVSQVDCGSYHTLAYVHTTGQVVSFGHGPS---DTGK 321
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 12/134 (8%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ G + WG+ + G V S P V VV ++
Sbjct: 183 LAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYIS 242
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG+EH L G+ +++G N +GQLG + P+++E + V
Sbjct: 243 CGAEHTAVLTQDGKV--------FTFGDNRSGQLGYSPTPEKRGPQLVEIID----GLVS 290
Query: 124 EVTCGSFHTALLTH 137
+V CGS+HT H
Sbjct: 291 QVDCGSYHTLAYVH 304
>gi|403347403|gb|EJY73122.1| RCC1 and BTB domaincontaining protein putative [Oxytricha
trifallax]
Length = 685
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 105/219 (47%), Gaps = 21/219 (9%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
+D Y+ G NN GQLG G + + P +++ V V+C +H+ ++T R
Sbjct: 143 QDGKLYTCGYNNYGQLGHGTQSNLSTPTLVQAL---KDTQVTNVSCSYYHSLIVTQDMRQ 199
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
++ ++ G +NGQLG T + P+ ++ L ++ CGL H+ V+ G+
Sbjct: 200 ASNQQTTVYSVGRNDNGQLGQEHTCHEITPKIIRSLNTR-QVIQTACGLHHSVFVTVHGE 258
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+S G L N + +RN+ P+LI K + VQ ACG HT++ D
Sbjct: 259 VFSCGFNDNGQLGHNDTKSRNQ------PVLIE-----SLKNKFIVQAACGYYHTLVRRD 307
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEF 300
G +++++GR G LG I+ A++ P +EF
Sbjct: 308 TG-EIYAFGRNDKGQLG----IETNGQALI-QPKQIQEF 340
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 119/292 (40%), Gaps = 60/292 (20%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
TP+ V V V+C H + + + YS G N+NGQLG +
Sbjct: 168 TPTLVQALKDTQVTNVSCSYYHSLIVTQDMRQASNQQTTVYSVGRNDNGQLGQEHTCHEI 227
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
PKII + N V + CG H+ +T + ++ G +NGQLGH T+
Sbjct: 228 TPKIIRSLN---TRQVIQTACGLHHSVFVT--------VHGEVFSCGFNDNGQLGHNDTK 276
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPN-------- 216
S P ++ L ++V CG +HT V G+++++G +KG LG+ N
Sbjct: 277 SRNQPVLIESLKNK-FIVQAACGYYHTLVRRDTGEIYAFGRNDKGQLGIETNGQALIQPK 335
Query: 217 ------------------------------ASLTRNEAGDAISPILISGN-GPHGPKFQ- 244
+S + E+G + + S N P+ Q
Sbjct: 336 QIQEFLTVSNIQHSGGNQNQLHSGQEHNQPSSQSLGESGAIMQGLAESNNLNNQQPQVQY 395
Query: 245 -----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ ++ACG H++ + + G +L+++GRG G LG G T D P V
Sbjct: 396 LSKKVNISKIACGCYHSIALCESG-QLFTFGRGNHGQLGQGNTEDQKLPKQV 446
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 34/217 (15%)
Query: 85 VCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDM 144
+ + +G N+ G+LGLGD + R P + F++ V ++ G+ H A+LT R D+
Sbjct: 40 LVFVFGQNSYGELGLGDVQERSIPSQVRFFDE---MNVTQIAAGNEHIAVLT---RNGDV 93
Query: 145 LESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY-VYLVSVDCGLFHTSVVSSAGDVW 203
L T G +GQLGHG +S P++++ L + +S G + +++S G ++
Sbjct: 94 L-----TVGFNGSGQLGHGNNKSISTPKKIESLKNIRITHISSANGCENLAIISQDGKLY 148
Query: 204 SWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+ G LG ++L+ +P L+ K V+C H+++VT
Sbjct: 149 TCGYNNYGQLGHGTQSNLS--------TPTLV-----QALKDTQVTNVSCSYYHSLIVTQ 195
Query: 262 DGYK-------LWSWGRGRSGVLGTGKTIDFFAPAIV 291
D + ++S GR +G LG T P I+
Sbjct: 196 DMRQASNQQTTVYSVGRNDNGQLGQEHTCHEITPKII 232
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 83/218 (38%), Gaps = 76/218 (34%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
TP + + V++ ACG H V + GE + S G N+NGQLG D +SR
Sbjct: 227 ITPKIIRSLNTRQVIQTACGLHHSVFVTVHGEVF--------SCGFNDNGQLGHNDTKSR 278
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
+P +IE+ + + CG +HT + R+ ++ + FG + GQLG T
Sbjct: 279 NQPVLIESLKNK---FIVQAACGYYHTLV---RRDTGEI-----YAFGRNDKGQLGIETN 327
Query: 166 QSALV-PEQVKEL----------------------------------------------- 177
AL+ P+Q++E
Sbjct: 328 GQALIQPKQIQEFLTVSNIQHSGGNQNQLHSGQEHNQPSSQSLGESGAIMQGLAESNNLN 387
Query: 178 ---PQYVYLVS------VDCGLFHTSVVSSAGDVWSWG 206
PQ YL + CG +H+ + +G ++++G
Sbjct: 388 NQQPQVQYLSKKVNISKIACGCYHSIALCESGQLFTFG 425
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 77/223 (34%), Gaps = 72/223 (32%)
Query: 29 CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYS 88
C D+ G S P + +V+ ACG H + GE Y +
Sbjct: 262 CGFNDNGQLGHNDTKSRNQPVLIESLKNKFIVQAACGYYHTLVRRDTGEIY--------A 313
Query: 89 WGANNNGQLGL-GDRESRLRPKIIETF--------------------------------- 114
+G N+ GQLG+ + ++ ++PK I+ F
Sbjct: 314 FGRNDKGQLGIETNGQALIQPKQIQEFLTVSNIQHSGGNQNQLHSGQEHNQPSSQSLGES 373
Query: 115 -------------NQDSPWAVY--------EVTCGSFHTALLTHRKRPNDMLESMCWTFG 153
N P Y ++ CG +H+ L +TFG
Sbjct: 374 GAIMQGLAESNNLNNQQPQVQYLSKKVNISKIACGCYHSIALCE--------SGQLFTFG 425
Query: 154 LGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
G +GQLG G T+ +P+QV L ++ + G +HT V+
Sbjct: 426 RGNHGQLGQGNTEDQKLPKQVASLHDK-KVIGIAGGFYHTIVL 467
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+ K+ACG H +AL +G+ +++G N+GQLG G+ E + PK + + +
Sbjct: 401 NISKIACGCYHSIALCESGQ--------LFTFGRGNHGQLGQGNTEDQKLPKQVASLHDK 452
Query: 118 SPWAVYEVTCGSFHTALLTHRKR 140
V + G +HT +L +K+
Sbjct: 453 K---VIGIAGGFYHTIVLVKQKK 472
>gi|322795632|gb|EFZ18311.1| hypothetical protein SINV_02346 [Solenopsis invicta]
Length = 3628
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 127/288 (44%), Gaps = 37/288 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG +LA+ G ++ WG + G + +S P + + +ACG
Sbjct: 2680 AVHSGGKHALALTQDGKVFSWGE---GEDGKLGHGNCISLDKPKLIEILKSKRIRDIACG 2736
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S GE Y+WG G+LG GD ++ RPK+++ V +V
Sbjct: 2737 SGHSAAIASNGE--------LYTWGLGEYGRLGHGDTITQTRPKLVQALVGQR---VVQV 2785
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + +++G G+ G+LG G + P V L + +
Sbjct: 2786 ACGSRDAQTMALT--------TDGCVYSWGDGDFGKLGRGGSDGCYTPLAVDRL-NGLGV 2836
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+ V+CG + ++ G+VW+WG KG L P L+ G G K
Sbjct: 2837 IQVECGAQFSLALTKYGEVWTWG--KG----DYFRLGHGNDHHVRKPTLV--EGLRGKKI 2888
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ VA GA H + VTD G ++++WG G G G T P++V
Sbjct: 2889 ---IHVAVGALHCLAVTDTG-QVYAWGDNDHGQQGNGATSVNRKPSLV 2932
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 108/234 (46%), Gaps = 34/234 (14%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V G +H +AL G+ + SWG +G+LG G+ S +PK+IE
Sbjct: 2679 VAVHSGGKHALALTQDGKVF--------SWGEGEDGKLGHGNCISLDKPKLIEILKSKR- 2729
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ ++ CGS H+A + +T+GLGE G+LGHG T + P+ V+ L
Sbjct: 2730 --IRDIACGSGHSAAIASNGE--------LYTWGLGEYGRLGHGDTITQTRPKLVQALVG 2779
Query: 180 YVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+V V CG T +++ G V+SWG + G L R + +P+ +
Sbjct: 2780 Q-RVVQVACGSRDAQTMALTTDGCVYSWG-DGDFG-----KLGRGGSDGCYTPLAVDRLN 2832
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G +QV CGA ++ +T G ++W+WG+G LG G P +V
Sbjct: 2833 GLG-----VIQVECGAQFSLALTKYG-EVWTWGKGDYFRLGHGNDHHVRKPTLV 2880
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 121/275 (44%), Gaps = 49/275 (17%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
A G LA+ G ++ WGN D G VS P + +V +ACGS +
Sbjct: 154 ADGKHYLALTQDGCVYSWGN---GDGGRLGHGDTVSYDEPKLIESLLDKNIVFIACGSTY 210
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
AL ++GE Y+WG N G+LG G+ + L P ++ T + V V CG
Sbjct: 211 SAALSASGE--------LYTWGRGNYGRLGHGNFDDVLTPTLVTTLKGHT---VVHVACG 259
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
S + L + +++G G+ G+LG G T + P+ V +L + +V V C
Sbjct: 260 SGDSQTLCVTA------SGIVFSWGDGDYGKLGRGGTDGSKTPKIVDKLLD-INVVKVFC 312
Query: 189 GLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH--GPKFQDP 246
G ++ +++ G+V++WG GDA L G+ H PK +
Sbjct: 313 GGQFSAALTAHGEVYTWG-----------------KGDAYR--LGHGSEEHVRYPKVIES 353
Query: 247 VQ------VACGAAHTVLVTDDGYKLWSWGRGRSG 275
++ ++ G H + +T+D + ++ WGR G
Sbjct: 354 LRDKKIKDLSVGTTHILALTEDQF-VYGWGRNDYG 387
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 126/276 (45%), Gaps = 43/276 (15%)
Query: 22 ALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD--FHGHTVVKVACGSEHVVALVSAGETY 79
A+++WG L D GG L S P++ + +A GS+ + + G+
Sbjct: 2590 AVYVWG---LNDKDQLGG--LKGSKIKLPIYSEVLSKLKPIHIAGGSKTLFIVSQEGK-- 2642
Query: 80 KGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRK 139
Y+ G NG+LGLGD + PK I +Q V V G H LT
Sbjct: 2643 ------LYACGEGTNGRLGLGDDNNVCEPKAIPFLSQFVIKKV-AVHSGGKHALALTQ-- 2693
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
+ +++G GE+G+LGHG S P+ + E+ + + + CG H++ ++S
Sbjct: 2694 ------DGKVFSWGEGEDGKLGHGNCISLDKPKLI-EILKSKRIRDIACGSGHSAAIASN 2746
Query: 200 GDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AH 255
G++++WG+ E G LG + TR + A+ Q VQVACG+ A
Sbjct: 2747 GELYTWGLGEYGRLGHGDTITQTRPKLVQALVG-------------QRVVQVACGSRDAQ 2793
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
T+ +T DG ++SWG G G LG G + + P V
Sbjct: 2794 TMALTTDGC-VYSWGDGDFGKLGRGGSDGCYTPLAV 2828
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 107/257 (41%), Gaps = 52/257 (20%)
Query: 43 VSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
V F+ P+ T++ +H +AL +D YSWG + G+LG GD
Sbjct: 139 VHGFSDKPI------TMIASHADGKHYLALT--------QDGCVYSWGNGDGGRLGHGDT 184
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
S PK+IE+ + + + CGS ++A L+ +T+G G G+LGH
Sbjct: 185 VSYDEPKLIESLLDKN---IVFIACGSTYSAALSASGE--------LYTWGRGNYGRLGH 233
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
G L P V L + +V V CG T V+++G V+SWG
Sbjct: 234 GNFDDVLTPTLVTTLKGHT-VVHVACGSGDSQTLCVTASGIVFSWG-------------- 278
Query: 221 RNEAGDAISPILISGNGPHGPKFQDP------VQVACGAAHTVLVTDDGYKLWSWGRGRS 274
GD +G PK D V+V CG + +T G ++++WG+G +
Sbjct: 279 ---DGDYGKLGRGGTDGSKTPKIVDKLLDINVVKVFCGGQFSAALTAHG-EVYTWGKGDA 334
Query: 275 GVLGTGKTIDFFAPAIV 291
LG G P ++
Sbjct: 335 YRLGHGSEEHVRYPKVI 351
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 106/258 (41%), Gaps = 49/258 (18%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G S A+ +G L+ WG + G + TP+ V GHTVV VA
Sbjct: 201 IVFIACGSTYSAALSASGELYTWGR---GNYGRLGHGNFDDVLTPTLVTTLKGHTVVHVA 257
Query: 64 CGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
CGS + + ++G + +SWG + G+LG G + PKI++ +
Sbjct: 258 CGSGDSQTLCVTASG--------IVFSWGDGDYGKLGRGGTDGSKTPKIVDKLLDIN--- 306
Query: 122 VYEVTCG-SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V +V CG F AL H + +T+G G+ +LGHG+ + P+ ++ L
Sbjct: 307 VVKVFCGGQFSAALTAHGE---------VYTWGKGDAYRLGHGSEEHVRYPKVIESLRDK 357
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ + G H ++ V+ WG RN+ G I P L G
Sbjct: 358 -KIKDLSVGTTHILALTEDQFVYGWG--------------RNDYGQ-IDPTL-------G 394
Query: 241 PKFQDPVQVACGAAHTVL 258
P +P ++ TV+
Sbjct: 395 PVVSEPTLCPTLSSKTVI 412
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 14/129 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G SLA+ G +W WG D G + P+ V G ++ VA
Sbjct: 2836 VIQVECGAQFSLALTKYGEVWTWGK---GDYFRLGHGNDHHVRKPTLVEGLRGKKIIHVA 2892
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H +A+ G+ Y+WG N++GQ G G +P ++ V
Sbjct: 2893 VGALHCLAVTDTGQV--------YAWGDNDHGQQGNGATSVNRKPSLVHDLEDAR---VN 2941
Query: 124 EVTCGSFHT 132
V+CGS H+
Sbjct: 2942 RVSCGSSHS 2950
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 25/189 (13%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
C + M+L D G ++ WG+ D G +TP V +G V++V C
Sbjct: 2787 CGSRDAQTMALTTD--GCVYSWGD---GDFGKLGRGGSDGCYTPLAVDRLNGLGVIQVEC 2841
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G++ +AL GE ++WG + +LG G+ +P ++E +
Sbjct: 2842 GAQFSLALTKYGEV--------WTWGKGDYFRLGHGNDHHVRKPTLVEGLRGKK---IIH 2890
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
V G+ H +T D + W G ++GQ G+G T P V +L + +
Sbjct: 2891 VAVGALHCLAVT------DTGQVYAW--GDNDHGQQGNGATSVNRKPSLVHDL-EDARVN 2941
Query: 185 SVDCGLFHT 193
V CG H+
Sbjct: 2942 RVSCGSSHS 2950
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G + LA+ + G ++ WG+ D +G + + PS V D V +V
Sbjct: 2887 KIIHVAVGALHCLAVTDTGQVYAWGD---NDHGQQGNGATSVNRKPSLVHDLEDARVNRV 2943
Query: 63 ACGSEHVVALVSAGETYKG-EDLVCYSWGANNNGQLGLG 100
+CGS H +A V + G +D V + + GQ+ LG
Sbjct: 2944 SCGSSHSIAWVLVDQPSNGNQDPVTFPTVRDPLGQMCLG 2982
>gi|395501386|ref|XP_003755076.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
[Sarcophilus harrisii]
Length = 979
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 107/239 (44%), Gaps = 34/239 (14%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
F V V CG H V ++ G Y+ G N+ GQ LG +SR +P+ +
Sbjct: 31 FINKKVQDVGCGLRHTVFVLDDG--------TVYTCGCNDLGQ--LGHEKSRKKPEQVVA 80
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-HGTTQSALVPE 172
+ + + V+CG HT L ND + W GL +GQLG GT + VP
Sbjct: 81 LDAQN---IVAVSCGEAHTLAL------NDKGQVYAW--GLDTDGQLGLPGTEEYIRVPR 129
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
+K L + +V + CG +H+ +S +V+SWG K L L R + I +L
Sbjct: 130 NIKSLTD-IQIVQIACGYYHSLALSKGSEVFSWGQNKHGQLGLGFELKRQSSPQLIKSLL 188
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G F QVA G AH+ ++T G ++ WGR + G LG D F P ++
Sbjct: 189 -------GIPF---TQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGLNDENDRFVPNLL 236
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI + G SLA+ ++ WG GF L +P + G +V
Sbjct: 138 QIVQIACGYYHSLALSKGSEVFSWGQN--KHGQLGLGFELKRQSSPQLIKSLLGIPFTQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRFVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 131/295 (44%), Gaps = 46/295 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF--TPSPVWDFHGHTVVK 61
I +V G +LA+++ G ++ WG D+ + G + P + +V+
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG----LDTDGQLGLPGTEEYIRVPRNIKSLTDIQIVQ 141
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPW 120
+ACG H +AL E + SWG N +GQLGLG + + + P++I++ P+
Sbjct: 142 IACGYYHSLALSKGSEVF--------SWGQNKHGQLGLGFELKRQSSPQLIKSL-LGIPF 192
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+V G H+ +LT L + +G + GQLG VP +K L +
Sbjct: 193 T--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRFVPNLLKSL-RS 241
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 242 QKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV------- 288
Query: 241 PKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 --FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 17/139 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVQDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLGTGKTIDF 285
++WG G LG T ++
Sbjct: 106 YAWGLDTDGQLGLPGTEEY 124
>gi|410208770|gb|JAA01604.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 1 [Pan troglodytes]
gi|410264080|gb|JAA20006.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 1 [Pan troglodytes]
gi|410293806|gb|JAA25503.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 1 [Pan troglodytes]
gi|410338543|gb|JAA38218.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 1 [Pan troglodytes]
Length = 555
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 31/239 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + +G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 85 STIEPRRLDSLNGKKIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTT 136
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 137 NHGLVPCHIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 186
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q +V++ CG V G+V+ WG N L
Sbjct: 187 GSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNG------NGQLGLG 240
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 241 NSGNQPTPCRVA--ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGN 293
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 116/289 (40%), Gaps = 62/289 (21%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 154 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNK 205
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + D E W G NGQLG G + + P +V L
Sbjct: 206 --VVVTIACGQMCCMAVV------DTGEVYVW--GYNGNGQLGLGNSGNQPTPCRVAAL- 254
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + V CG HT V++ G V++WG N G L +GN
Sbjct: 255 QGIRVQRVACGYAHTLVLTDEGQVYAWGA--------------NSYGQ-----LGTGNKS 295
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTG 280
+ + PV V AC + HT G ++ WG RG+S +L T
Sbjct: 296 N-QSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTD 354
Query: 281 KTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLEGAEERDEKL 329
FA V W L+ E +D L E K+ + E D K
Sbjct: 355 DVFACFATPAVSWRLLSVE-HEDFLTVA----ESLKKEFDSPETADLKF 398
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ + G +++WG + G L +S TP V G V
Sbjct: 207 VVTIACGQMCCMAVVDTGEVYVWG------YNGNGQLGLGNSGNQPTPCRVAALQGIRVQ 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + T +D
Sbjct: 261 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPV-TVEKDRII 311
Query: 121 AVYEVTCGSFHTA 133
+ C S HT+
Sbjct: 312 EI--AACHSTHTS 322
>gi|291408944|ref|XP_002720770.1| PREDICTED: regulator of chromosome condensation and BTB domain
containing protein 2 [Oryctolagus cuniculus]
Length = 551
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 108/236 (45%), Gaps = 34/236 (14%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
K+AC S HVV + GE + +WG N QLG G L P I T
Sbjct: 99 KIACLSYGSGPHVVLATTEGEVF--------TWGHNAYSQLGNGTTNHGLVPCQIST--N 148
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V EV CGS+H+ +LT E W G +GQ+G G T + +P +V
Sbjct: 149 LSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGSGPTANQPIPRRVTG 200
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q +V++ CG + V G+V+ WG N L G+ +P ++
Sbjct: 201 CLQNKVVVNIACGQMCSMAVVDTGEVYVWGYNG------NGQLGLGSGGNQPTPCRVA-- 252
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G + Q +VACG AHT+++TD+G ++++WG G LGTG + P V+
Sbjct: 253 ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNKSNQSYPTPVV 304
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 110/253 (43%), Gaps = 45/253 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 154 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGPTANQPIPRRVTGCLQNK 205
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + D E W G NGQLG G+ + P +V L
Sbjct: 206 --VVVNIACGQMCSMAVV------DTGEVYVW--GYNGNGQLGLGSGGNQPTPCRVAAL- 254
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAI-SPILISG 235
Q + + V CG HT V++ G V++WG LG T N++ + +P+++
Sbjct: 255 QGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLG-------TGNKSNQSYPTPVVVE- 306
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFF 286
K + AC + HT G ++ WG RG+S +L T F
Sbjct: 307 ------KDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACF 360
Query: 287 APAIVLWPPLTEE 299
A V W L+ E
Sbjct: 361 ATPAVSWRLLSVE 373
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 17/108 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS---SFTPSPVWDFHGHTVV 60
+ ++ G M S+A+ + G +++WG + G L S TP V G V
Sbjct: 207 VVNIACGQMCSMAVVDTGEVYVWG------YNGNGQLGLGSGGNQPTPCRVAALQGIRVQ 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 261 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYP 300
>gi|432095949|gb|ELK26864.1| Putative E3 ubiquitin-protein ligase HERC3 [Myotis davidii]
Length = 1031
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIVHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG D S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKDFPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEEDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 108/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG G RE +I +Q
Sbjct: 35 SVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLGHG-REGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IVHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG AS R + + I P
Sbjct: 134 LNQQT-ILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKDFPSQASPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEEDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEEDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|186524238|ref|NP_197443.3| regulator of chromosome condensation-like protein with FYVE zinc
finger domain [Arabidopsis thaliana]
gi|332005320|gb|AED92703.1| regulator of chromosome condensation-like protein with FYVE zinc
finger domain [Arabidopsis thaliana]
Length = 1105
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 113/250 (45%), Gaps = 53/250 (21%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +ACG +H V + GE++ SWG + G+LG G + PK+I+ N +
Sbjct: 314 VQNIACGGQHAVLVTKQGESF--------SWGEESEGRLGHGVDSNVQHPKLIDALNTTN 365
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ V CG +H+ +T L +T+G G+ G LGHG S VP++V L
Sbjct: 366 ---IELVACGEYHSCAVT--------LSGDLYTWGKGDFGILGHGNEVSHWVPKRVNFLM 414
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +++ S+ CG +HT+VV+SAG ++++G + G+ + GD S +
Sbjct: 415 EGIHVSSIACGPYHTAVVTSAGQLFTFG-DGTFGVLGH--------GDRKSVFI------ 459
Query: 239 HGPKFQDP------VQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGK 281
P+ D V+ ACG HT V + KL++WG G LG G
Sbjct: 460 --PREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKSRLGHGD 517
Query: 282 TIDFFAPAIV 291
P V
Sbjct: 518 KEPKLVPTCV 527
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 126/292 (43%), Gaps = 36/292 (12%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G S A+ +G L+ WG D G + VS + P V + G V +ACG
Sbjct: 369 VACGEYHSCAVTLSGDLYTWGKG---DFGILGHGNEVSHWVPKRVNFLMEGIHVSSIACG 425
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ +++G G LG GDR+S P+ +++
Sbjct: 426 PYHTAVVTSAGQ--------LFTFGDGTFGVLGHGDRKSVFIPREVDSLKG---LRTVRA 474
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ +LGHG + LVP V L +
Sbjct: 475 ACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKSRLGHGDKEPKLVPTCVAALVEPN 534
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG T ++++G V++ G P N D P + G
Sbjct: 535 F-CQVACGHSLTVALTTSGHVYTMG-------SPVYGQLGNPHADGKVPTRVDG------ 580
Query: 242 KFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K ++ACGA H ++T ++++WG+G +G LG G D +P +V
Sbjct: 581 KLHKSFVEEIACGAYHVAVLTSR-TEVYTWGKGSNGRLGHGDADDRNSPTLV 631
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 118/296 (39%), Gaps = 51/296 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
+ S+ G + + +AG L+ +G +G F ++ S F P V G
Sbjct: 418 HVSSIACGPYHTAVVTSAGQLFTFG---------DGTFGVLGHGDRKSVFIPREVDSLKG 468
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLV-------CYSWGANNNGQLGLGDRESRLRPK 109
V+ ACG H A+V E G ++WG + +LG GD+E +L P
Sbjct: 469 LRTVRAACGVWHTAAVV---EVMVGSSSSSNCSSGKLFTWGDGDKSRLGHGDKEPKLVPT 525
Query: 110 IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
+ + + +V CG T LT +T G GQLG+
Sbjct: 526 CVAALVEPN---FCQVACGHSLTVALT--------TSGHVYTMGSPVYGQLGNPHADGK- 573
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
VP +V ++ + CG +H +V++S +V++WG KG N L +A D S
Sbjct: 574 VPTRVDGKLHKSFVEEIACGAYHVAVLTSRTEVYTWG--KG----SNGRLGHGDADDRNS 627
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
P L+ K + +ACG+ T V W+ G +S G + +F
Sbjct: 628 PTLV-----ESLKDKQVKSIACGSNFTAAVC---LHKWASGMDQSMCSGCRQPFNF 675
>gi|332233498|ref|XP_003265939.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 isoform 2
[Nomascus leucogenys]
Length = 984
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 115/246 (46%), Gaps = 31/246 (12%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRL 106
P P+ V V+CG EH +A+ G ++WGA + GQLG+G+ +E
Sbjct: 66 PEPIQALETLNVDLVSCGKEHSLAVCHKGRV--------FAWGAGSEGQLGIGELKEISF 117
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT- 165
PK I T N + +V+CG +H+ L+ +S +++G +GQLG G
Sbjct: 118 TPKKITTLNG---IKIIQVSCGHYHSLALSK--------DSQVFSWGKNSHGQLGLGKEF 166
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
S P++V+ L + + L V G H+ +S G + WG L + RN
Sbjct: 167 PSQASPQRVRSL-EGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSG---RNVPV 222
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ P+ + G V ++CGA HT ++T DG K++++G RSG LG T +
Sbjct: 223 QSNKPLSVGALKNLG-----VVYISCGAEHTAVLTQDG-KVFTFGDNRSGQLGYSPTPEK 276
Query: 286 FAPAIV 291
P +V
Sbjct: 277 RGPQLV 282
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 127/290 (43%), Gaps = 63/290 (21%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHTVVKV 62
V G SLA+ + G ++ WG + +EG + SFTP + +G +++V
Sbjct: 80 VSCGKEHSLAVCHKGRVFAWG------AGSEGQLGIGELKEISFTPKKITTLNGIKIIQV 133
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWA 121
+CG H +AL +D +SWG N++GQLGLG S+ P+ + + + P A
Sbjct: 134 SCGHYHSLAL--------SKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSL-EGIPLA 184
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWT-FGLGEN--GQL---GHGTTQSALVPEQVK 175
+V G H+ L S+C T FG G N GQL G + P V
Sbjct: 185 --QVAAGGAHSFAL-----------SLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVG 231
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILI 233
L + + +V + CG HT+V++ G V+++G + LG P
Sbjct: 232 AL-KNLGVVYISCGAEHTAVLTQDGKVFTFGDNRSGQLGYSPTP---------------- 274
Query: 234 SGNGPHGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
GP + D + QV CG+ HT+ ++ S+G G S TGK
Sbjct: 275 EKRGPQLVEIIDGLVSQVDCGSYHTLAYVHTTGQVVSFGHGPS---DTGK 321
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 12/134 (8%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ G + WG+ + G V S P V VV ++
Sbjct: 183 LAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYIS 242
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG+EH L G+ +++G N +GQLG + P+++E + V
Sbjct: 243 CGAEHTAVLTQDGKV--------FTFGDNRSGQLGYSPTPEKRGPQLVEIID----GLVS 290
Query: 124 EVTCGSFHTALLTH 137
+V CGS+HT H
Sbjct: 291 QVDCGSYHTLAYVH 304
>gi|125972780|ref|YP_001036690.1| dockerin type I cellulosome protein [Clostridium thermocellum ATCC
27405]
gi|256004969|ref|ZP_05429941.1| cellulosome protein dockerin type I [Clostridium thermocellum DSM
2360]
gi|281416977|ref|ZP_06247997.1| Dockerin type 1 [Clostridium thermocellum JW20]
gi|385779304|ref|YP_005688469.1| Dockerin type 1 [Clostridium thermocellum DSM 1313]
gi|419721626|ref|ZP_14248784.1| Dockerin type 1 protein [Clostridium thermocellum AD2]
gi|419725441|ref|ZP_14252484.1| Dockerin type 1 protein [Clostridium thermocellum YS]
gi|125713005|gb|ABN51497.1| Dockerin type 1 [Clostridium thermocellum ATCC 27405]
gi|255991038|gb|EEU01148.1| cellulosome protein dockerin type I [Clostridium thermocellum DSM
2360]
gi|281408379|gb|EFB38637.1| Dockerin type 1 [Clostridium thermocellum JW20]
gi|316940984|gb|ADU75018.1| Dockerin type 1 [Clostridium thermocellum DSM 1313]
gi|380771190|gb|EIC05067.1| Dockerin type 1 protein [Clostridium thermocellum YS]
gi|380782322|gb|EIC11962.1| Dockerin type 1 protein [Clostridium thermocellum AD2]
Length = 469
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 127/294 (43%), Gaps = 46/294 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S I V A +L + N G +W++ P+ SS + + P W+ G +K
Sbjct: 216 SDIKYVAAKFSRTLIVKNDGTVWLYSLPPINTSSD-------AEYMP---WEIKGFGDIK 265
Query: 62 VA-CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSP 119
+A G+ H+VAL ED ++WG N GQLG G + + I NQ
Sbjct: 266 MADIGTGHIVALR--------EDGTVWTWGENVWGQLGNGWQQHHNIHTYIYFEPNQAKN 317
Query: 120 WA-VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ + + G H+ L + WT+G NG+LG+GTT L P++V+ L
Sbjct: 318 LSDIVSIAAGDAHSVALKS--------DGTVWTWGSNFNGELGNGTTTYILEPKKVEGLE 369
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+V++D G+ HT + + G VW WG + G N + R+ PI + G
Sbjct: 370 D---IVAIDAGIGHTVALKADGTVWVWG-KNSYGQLGNGTTMRSTV-----PIQVEG--- 417
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ V + G T+ +DG +W+WG+ G LG G + P V
Sbjct: 418 ----LEGIVAIQAGMECTIAYKNDG-TVWAWGKNDFGQLGDGTFENILRPVKVF 466
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 70/179 (39%), Gaps = 32/179 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S I S+ AG S+A+ + G +W WG N L + +T P V
Sbjct: 318 LSDIVSIAAGDAHSVALKSDGTVWTWGSNFNGELGNGTT------TYILEPKKVEGL--E 369
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V + G H VAL + G + WG N+ GQLG G P +E
Sbjct: 370 DIVAIDAGIGHTVALKADG--------TVWVWGKNSYGQLGNGTTMRSTVPIQVEGLE-- 419
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ + G T + + W +G + GQLG GT ++ L P +V E
Sbjct: 420 ---GIVAIQAGMECTIAYKN--------DGTVWAWGKNDFGQLGDGTFENILRPVKVFE 467
>gi|334187769|ref|NP_001190338.1| regulator of chromosome condensation-like protein with FYVE zinc
finger domain [Arabidopsis thaliana]
gi|332005321|gb|AED92704.1| regulator of chromosome condensation-like protein with FYVE zinc
finger domain [Arabidopsis thaliana]
Length = 1139
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 113/250 (45%), Gaps = 53/250 (21%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +ACG +H V + GE++ SWG + G+LG G + PK+I+ N +
Sbjct: 348 VQNIACGGQHAVLVTKQGESF--------SWGEESEGRLGHGVDSNVQHPKLIDALNTTN 399
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ V CG +H+ +T L +T+G G+ G LGHG S VP++V L
Sbjct: 400 ---IELVACGEYHSCAVT--------LSGDLYTWGKGDFGILGHGNEVSHWVPKRVNFLM 448
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +++ S+ CG +HT+VV+SAG ++++G + G+ + GD S +
Sbjct: 449 EGIHVSSIACGPYHTAVVTSAGQLFTFG-DGTFGVLGH--------GDRKSVFI------ 493
Query: 239 HGPKFQDP------VQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGK 281
P+ D V+ ACG HT V + KL++WG G LG G
Sbjct: 494 --PREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKSRLGHGD 551
Query: 282 TIDFFAPAIV 291
P V
Sbjct: 552 KEPKLVPTCV 561
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 126/292 (43%), Gaps = 36/292 (12%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G S A+ +G L+ WG D G + VS + P V + G V +ACG
Sbjct: 403 VACGEYHSCAVTLSGDLYTWGKG---DFGILGHGNEVSHWVPKRVNFLMEGIHVSSIACG 459
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ +++G G LG GDR+S P+ +++
Sbjct: 460 PYHTAVVTSAGQ--------LFTFGDGTFGVLGHGDRKSVFIPREVDSLKG---LRTVRA 508
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ +LGHG + LVP V L +
Sbjct: 509 ACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKSRLGHGDKEPKLVPTCVAALVEPN 568
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG T ++++G V++ G P N D P + G
Sbjct: 569 F-CQVACGHSLTVALTTSGHVYTMG-------SPVYGQLGNPHADGKVPTRVDG------ 614
Query: 242 KFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K ++ACGA H ++T ++++WG+G +G LG G D +P +V
Sbjct: 615 KLHKSFVEEIACGAYHVAVLTSR-TEVYTWGKGSNGRLGHGDADDRNSPTLV 665
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 118/296 (39%), Gaps = 51/296 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
+ S+ G + + +AG L+ +G +G F ++ S F P V G
Sbjct: 452 HVSSIACGPYHTAVVTSAGQLFTFG---------DGTFGVLGHGDRKSVFIPREVDSLKG 502
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLV-------CYSWGANNNGQLGLGDRESRLRPK 109
V+ ACG H A+V E G ++WG + +LG GD+E +L P
Sbjct: 503 LRTVRAACGVWHTAAVV---EVMVGSSSSSNCSSGKLFTWGDGDKSRLGHGDKEPKLVPT 559
Query: 110 IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
+ + + +V CG T LT +T G GQLG+
Sbjct: 560 CVAALVEPN---FCQVACGHSLTVALT--------TSGHVYTMGSPVYGQLGNPHADGK- 607
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
VP +V ++ + CG +H +V++S +V++WG KG N L +A D S
Sbjct: 608 VPTRVDGKLHKSFVEEIACGAYHVAVLTSRTEVYTWG--KG----SNGRLGHGDADDRNS 661
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
P L+ K + +ACG+ T V W+ G +S G + +F
Sbjct: 662 PTLV-----ESLKDKQVKSIACGSNFTAAVC---LHKWASGMDQSMCSGCRQPFNF 709
>gi|255540989|ref|XP_002511559.1| Ran GTPase binding protein, putative [Ricinus communis]
gi|223550674|gb|EEF52161.1| Ran GTPase binding protein, putative [Ricinus communis]
Length = 1028
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 130/302 (43%), Gaps = 46/302 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF----SLVSSFTPSPVW-DFHG 56
S + V G + A+ +G L+ WG D + G+ S VS + P V
Sbjct: 350 SNVVLVACGEFHTCAVTVSGNLYTWG-----DDTHNTGYLGHGSAVSHWIPREVIGQIES 404
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+ V+CG H A+ S G+ + ++G G LG GDR S +P+ +E+
Sbjct: 405 VRISFVSCGPWHTAAVSSQGKLF--------TFGDGTFGALGHGDRSSTSKPREVESLKG 456
Query: 117 DSPWAVYEVTCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPE 172
+V+CG +HTA + R + L +T+G GE GQLGHG + LVP
Sbjct: 457 ---LRTLKVSCGIWHTAAVIDFINESDRLDTSLSGKLFTWGAGERGQLGHGDEEPRLVPS 513
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGL---CPNASLTRNEAGDAIS 229
V +P V V C T ++ G V++ G L C L + GD I
Sbjct: 514 CV-SMPAGV--CQVACAHSMTIALTVLGQVYTMGAADYGQLGSPCSVGKLPIHTDGD-IR 569
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA 289
I Q+ACG+ H V ++ +G +++WG+G +G LG G D P
Sbjct: 570 NCHIK-------------QIACGSHHVVALSSNG-DVYTWGKGINGQLGHGDIKDRHTPT 615
Query: 290 IV 291
+V
Sbjct: 616 LV 617
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 110/248 (44%), Gaps = 47/248 (18%)
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ACGS+H V + G+ + SWG ++ G+LG G +PK+I+ ++ +
Sbjct: 303 IACGSKHAVIVTKQGQIF--------SWGESSGGKLGHGADADVSQPKVIDALSESN--- 351
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFG--LGENGQLGHGTTQSALVPEQVKELPQ 179
V V CG FHT +T + +T+G G LGHG+ S +P +V +
Sbjct: 352 VVLVACGEFHTCAVT--------VSGNLYTWGDDTHNTGYLGHGSAVSHWIPREVIGQIE 403
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
V + V CG +HT+ VSS G ++++ G LG +S ++ +++
Sbjct: 404 SVRISFVSCGPWHTAAVSSQGKLFTFGDGTFGALGHGDRSSTSKPREVESL--------- 454
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDD-----------GYKLWSWGRGRSGVLGTGKTIDFF 286
K ++V+CG HT V D KL++WG G G LG G
Sbjct: 455 ----KGLRTLKVSCGIWHTAAVIDFINESDRLDTSLSGKLFTWGAGERGQLGHGDEEPRL 510
Query: 287 APAIVLWP 294
P+ V P
Sbjct: 511 VPSCVSMP 518
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 14/146 (9%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+C V M++A+ G ++ G D G V D + ++A
Sbjct: 521 VCQVACAHSMTIALTVLGQVYTMG---AADYGQLGSPCSVGKLPIHTDGDIRNCHIKQIA 577
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CGS HVVAL S G+ Y+WG NGQLG GD + R P +++ V
Sbjct: 578 CGSHHVVALSSNGDV--------YTWGKGINGQLGHGDIKDRHTPTLVKALKHKQ---VK 626
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMC 149
V CGS TA++ K + +S+C
Sbjct: 627 SVVCGSNFTAVICPHKCVSSADQSIC 652
>gi|119578073|gb|EAW57669.1| hCG2006901, isoform CRA_f [Homo sapiens]
Length = 1319
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 130/292 (44%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 848 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 904
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 905 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 953
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 954 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGV 1004
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R P + G
Sbjct: 1005 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRR--------PRQV--QGLQ 1052
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 1053 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 1100
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 32/203 (15%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ +ACGS H AL S+GE Y +WG G+LG GD ++L+PK+++
Sbjct: 17 IRDIACGSSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR 68
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V +V CGS L E + +++G G+ G+LG G ++ +P+ ++ L
Sbjct: 69 ---VIQVACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERL- 118
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILIS 234
+ ++CG + ++ +G VW+W + + G N + T N P L+
Sbjct: 119 NGQGVCQIECGAQFSLALTKSGVVWTWQVYAWGDNDHGQQGNGTTTVNR-----KPTLV- 172
Query: 235 GNGPHGPKFQDPVQVACGAAHTV 257
G + Q +VACG++H+V
Sbjct: 173 ----QGLEGQKITRVACGSSHSV 191
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 897 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 950
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 951 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 1001
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 1002 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 1052
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 1053 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 1103
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 1104 -QGKKVN---RVACGSAHTL 1119
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 750 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 806
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ Q V G H
Sbjct: 807 ADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 857
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 858 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 908
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H V +ACG+
Sbjct: 909 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIACGS 957
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 958 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 985
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 37/195 (18%)
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
+P++IE + ++ CGS H+A LT +T+GLGE G+LGHG
Sbjct: 5 KPRLIEALKTKR---IRDIACGSSHSAALTS--------SGELYTWGLGEYGRLGHGDNT 53
Query: 167 SALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWG----MEKGLGLCPNASLT 220
+ L P+ VK L + ++ V CG T ++ G V+SWG + G G ++
Sbjct: 54 TQLKPKMVKVLLGH-RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIP 112
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG----YKLWSWGRGRSGV 276
+N + NG Q Q+ CGA ++ +T G +++++WG G
Sbjct: 113 QN---------IERLNG------QGVCQIECGAQFSLALTKSGVVWTWQVYAWGDNDHGQ 157
Query: 277 LGTGKTIDFFAPAIV 291
G G T P +V
Sbjct: 158 QGNGTTTVNRKPTLV 172
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 83/196 (42%), Gaps = 26/196 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 16 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 72
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 73 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 123
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWT-----FGLGENGQLGHGTTQSALVPEQVKEL 177
++ CG+ + LT + WT +G ++GQ G+GTT P V+ L
Sbjct: 124 CQIECGAQFSLALTK--------SGVVWTWQVYAWGDNDHGQQGNGTTTVNRKPTLVQGL 175
Query: 178 PQYVYLVSVDCGLFHT 193
+ + V CG H+
Sbjct: 176 -EGQKITRVACGSSHS 190
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 760 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 797
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 798 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 856
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 857 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 903
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 904 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 942
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSS--TEGGFSLVSSFTPSPVWDFHGHTVVK 61
+C ++ G SLA+ +G +W W D+ +G + + P+ V G + +
Sbjct: 123 VCQIECGAQFSLALTKSGVVWTWQVYAWGDNDHGQQGNGTTTVNRKPTLVQGLEGQKITR 182
Query: 62 VACGSEHVVA 71
VACGS H VA
Sbjct: 183 VACGSSHSVA 192
>gi|93003290|tpd|FAA00228.1| TPA: zinc finger protein [Ciona intestinalis]
Length = 2334
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 129/281 (45%), Gaps = 41/281 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG+ + G S + TP + F + ++CG
Sbjct: 519 AVHSGGRHAMALTYDGHVYSWGD---GEEGKLGHGSRADALTPRKIETFPEKCIRDISCG 575
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+G Y+WG G+LG G+ + L+PK ++ S V +V
Sbjct: 576 SSHSAAIGSSG--------TLYTWGHGMYGRLGHGNNHTLLKPKPVQAL---SGQQVVQV 624
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L + + + +++G G+ G+LG G + VP+ V+ L +V
Sbjct: 625 ACGSRDAQTLCLTQ------DGLVYSWGDGDFGKLGRGGSDGCCVPKPVERLSGQ-DVVK 677
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + +S G VW+WG KG LG + + R P ++ G H
Sbjct: 678 IECGAQFSLALSRCGLVWTWG--KGDYFRLGHGSDQHVRR--------PQVVEGLREH-- 725
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
V VA GA H + VT+ G ++++WG G G G T
Sbjct: 726 ---KVVDVAVGALHCLAVTEGG-QVFAWGDNDHGQQGNGGT 762
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 120/267 (44%), Gaps = 40/267 (14%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
D A +++WG L D GG TP D V +V GS+ + A+ G+
Sbjct: 426 DCAAKVFVWG---LNDKDQLGGLKGSKHKTPVASKDLQRLKVTQVIGGSKSLFAVTMGGK 482
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
Y+ G + +G+LGLG + F Q P V G H LT+
Sbjct: 483 V--------YACGESTSGRLGLGPVTGSVSRLTQVLFPQ--PIKKLAVHSGGRHAMALTY 532
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
+ +++G GE G+LGHG+ AL P +++ P+ + + CG H++ +
Sbjct: 533 --------DGHVYSWGDGEEGKLGHGSRADALTPRKIETFPEKC-IRDISCGSSHSAAIG 583
Query: 198 SAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA-- 253
S+G +++W GM LG N +L + + A+S Q VQVACG+
Sbjct: 584 SSGTLYTWGHGMYGRLGHGNNHTLLKPKPVQALSG-------------QQVVQVACGSRD 630
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +T DG ++SWG G G LG G
Sbjct: 631 AQTLCLTQDGL-VYSWGDGDFGKLGRG 656
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 129/293 (44%), Gaps = 43/293 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFT-PSPVWDFHGHTVVKV 62
SV AGG LA+ N G ++ WG +G G SS P + G +VKV
Sbjct: 1497 SVNAGGKHILALSNEGEVYSWGE------GVDGKLGHGNRSSLDHPRIIESLRGDLIVKV 1550
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H A+ + G Y+WG G+LG D E +L+PK++ + V
Sbjct: 1551 ATGGSHSAAINATGG--------LYTWGKGRYGRLGHEDSEDQLKPKLVNALKDN---LV 1599
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CG+ L + S+ W++G G+ G+LG G + VP + L +
Sbjct: 1600 VDVACGNGDAQTLCITEGTGG--SSVVWSWGDGDYGKLGRGGSDGCKVPAIIDTL-MGKH 1656
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGP 238
+ V CG + +S AG V++WG KG LG + + R + +++ + +
Sbjct: 1657 ITHVACGSQFSLALSKAGGVYTWG--KGDYYRLGHGSDEHVRRPKLIESLRGMKV----- 1709
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V+V+ G+ H + D+G +++WG G +G G T P +V
Sbjct: 1710 --------VEVSVGSLHCIAAVDNG-DVYTWGDNDEGQIGDGTTQATQIPRLV 1753
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 118/267 (44%), Gaps = 34/267 (12%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G S AI ++G L+ WG+ +L+ P PV G VV+VA
Sbjct: 569 IRDISCGSSHSAAIGSSGTLYTWGHGMYGRLGHGNNHTLLK---PKPVQALSGQQVVQVA 625
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN-QDSPWAV 122
CGS L +D + YSWG + G+LG G + PK +E + QD V
Sbjct: 626 CGSRDAQTLCLT------QDGLVYSWGDGDFGKLGRGGSDGCCVPKPVERLSGQD----V 675
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + L+ + WT+G G+ +LGHG+ Q P+ V+ L ++
Sbjct: 676 VKIECGAQFSLALSRC--------GLVWTWGKGDYFRLGHGSDQHVRRPQVVEGLREH-K 726
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ G V++WG N + G ++ + G G K
Sbjct: 727 VVDVAVGALHCLAVTEGGQVFAWG--------DNDHGQQGNGGTTVNRKPMKVQGLEGVK 778
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSW 269
++ACG++H++ D ++ ++
Sbjct: 779 I---TKLACGSSHSIAFADTSHEAQTF 802
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 110/259 (42%), Gaps = 54/259 (20%)
Query: 42 LVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD 101
L P P+ H+ G H +AL TY G YSWG G+LG G
Sbjct: 506 LTQVLFPQPIKKLAVHS------GGRHAMAL-----TYDGH---VYSWGDGEEGKLGHGS 551
Query: 102 RESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
R L P+ IETF + + +++CGS H+A + +T+G G G+LG
Sbjct: 552 RADALTPRKIETFPEK---CIRDISCGSSHSAAIGS--------SGTLYTWGHGMYGRLG 600
Query: 162 HGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWG------MEKG--LG 212
HG + L P+ V+ L Q V V+ T ++ G V+SWG + +G G
Sbjct: 601 HGNNHTLLKPKPVQALSGQQVVQVACGSRDAQTLCLTQDGLVYSWGDGDFGKLGRGGSDG 660
Query: 213 LCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG 272
C + R +SG QD V++ CGA ++ ++ G +W+WG+G
Sbjct: 661 CCVPKPVER-----------LSG--------QDVVKIECGAQFSLALSRCGL-VWTWGKG 700
Query: 273 RSGVLGTGKTIDFFAPAIV 291
LG G P +V
Sbjct: 701 DYFRLGHGSDQHVRRPQVV 719
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 106/244 (43%), Gaps = 39/244 (15%)
Query: 55 HGH-TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
H H T V V G +H++AL + GE Y SWG +G+LG G+R S P+IIE+
Sbjct: 1490 HVHITQVSVNAGGKHILALSNEGEVY--------SWGEGVDGKLGHGNRSSLDHPRIIES 1541
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
D + +V G H+A + +T+G G G+LGH ++ L P+
Sbjct: 1542 LRGD---LIVKVATGGSHSAAIN--------ATGGLYTWGKGRYGRLGHEDSEDQLKPKL 1590
Query: 174 VKELPQYVYLVSVDCG------LFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDA 227
V L + +V V CG L T + VWSWG L S G
Sbjct: 1591 VNALKDNL-VVDVACGNGDAQTLCITEGTGGSSVVWSWGDGDYGKLGRGGS-----DGCK 1644
Query: 228 ISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
+ I+ + G H VACG+ ++ ++ G +++WG+G LG G
Sbjct: 1645 VPAIIDTLMGKH------ITHVACGSQFSLALSKAG-GVYTWGKGDYYRLGHGSDEHVRR 1697
Query: 288 PAIV 291
P ++
Sbjct: 1698 PKLI 1701
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 102/259 (39%), Gaps = 38/259 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I V GG S AI+ G L+ WG E P V + VV VA
Sbjct: 1547 IVKVATGGSHSAAINATGGLYTWGKGRYGRLGHEDS---EDQLKPKLVNALKDNLVVDVA 1603
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG+ L T G V +SWG + G+LG G + P II+T +
Sbjct: 1604 CGNGDAQTLCITEGT--GGSSVVWSWGDGDYGKLGRGGSDGCKVPAIIDTLMGKH---IT 1658
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
V CGS + L+ +T+G G+ +LGHG+ + P+ ++ L + + +
Sbjct: 1659 HVACGSQFSLALSK--------AGGVYTWGKGDYYRLGHGSDEHVRRPKLIESL-RGMKV 1709
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS-----PILISGNGP 238
V V G H GDV++WG + GD + P L++
Sbjct: 1710 VEVSVGSLHCIAAVDNGDVYTWGDND-----------EGQIGDGTTQATQIPRLVAALQG 1758
Query: 239 HGPKFQDPVQVACGAAHTV 257
H V+CG+AHTV
Sbjct: 1759 HHIS-----HVSCGSAHTV 1772
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 27/219 (12%)
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
T GE V ++ G G+LG+G ES P +IE+ Q V G H L++
Sbjct: 1453 TVTGEGKV-FATGYGAGGRLGIGSNESVAIPTLIESI-QHVHITQVSVNAGGKHILALSN 1510
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
E +++G G +G+LGHG S P ++ L + +V V G H++ ++
Sbjct: 1511 --------EGEVYSWGEGVDGKLGHGNRSSLDHPRIIESL-RGDLIVKVATGGSHSAAIN 1561
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AH 255
+ G +++WG + L ++ D + P L++ K V VACG A
Sbjct: 1562 ATGGLYTWGKGR------YGRLGHEDSEDQLKPKLVN-----ALKDNLVVDVACGNGDAQ 1610
Query: 256 TVLVTD---DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
T+ +T+ +WSWG G G LG G + PAI+
Sbjct: 1611 TLCITEGTGGSSVVWSWGDGDYGKLGRGGSDGCKVPAII 1649
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 83/208 (39%), Gaps = 29/208 (13%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
+ WG N+ QLG G + S+ + + Q V +V GS +T +
Sbjct: 432 FVWGLNDKDQLG-GLKGSKHKTPVASKDLQR--LKVTQVIGGSKSLFAVT--------MG 480
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ G +G+LG G ++ PQ + ++V G H ++ G V+SWG
Sbjct: 481 GKVYACGESTSGRLGLGPVTGSVSRLTQVLFPQPIKKLAVHSGGRHAMALTYDGHVYSWG 540
Query: 207 M-EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV--QVACGAAHTVLVTDDG 263
E+G L DA++P I F + ++CG++H+ + G
Sbjct: 541 DGEEG-------KLGHGSRADALTPRKIE-------TFPEKCIRDISCGSSHSAAIGSSG 586
Query: 264 YKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
L++WG G G LG G P V
Sbjct: 587 -TLYTWGHGMYGRLGHGNNHTLLKPKPV 613
>gi|282395057|ref|NP_598844.3| RCC1 and BTB domain-containing protein 2 [Mus musculus]
gi|282396060|ref|NP_001164165.1| RCC1 and BTB domain-containing protein 2 [Mus musculus]
gi|81880241|sp|Q99LJ7.1|RCBT2_MOUSE RecName: Full=RCC1 and BTB domain-containing protein 2; AltName:
Full=Chromosome condensation 1-like; AltName:
Full=Regulator of chromosome condensation and BTB
domain-containing protein 2
gi|13096854|gb|AAH03224.1| Regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 2 [Mus musculus]
gi|26327151|dbj|BAC27319.1| unnamed protein product [Mus musculus]
gi|148703914|gb|EDL35861.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 2, isoform CRA_a [Mus musculus]
gi|339779805|gb|AEK06433.1| RC/BTB2 [Mus musculus]
gi|339779807|gb|AEK06434.1| RC/BTB2 [Mus musculus]
Length = 551
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 115/250 (46%), Gaps = 31/250 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 85 STIEPRRLDSLTGKKIASLSYGSGPHIVLATTDGEVF--------TWGHNAYSQLGNGTT 136
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 137 NHGLVPCHIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 186
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q ++++ CG + V G+V+ WG N L
Sbjct: 187 GSTANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGYNG------NGQLGLG 240
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 241 SSGNQPTPCRVAA--LQGIRVQ---RVACGYAHTLVLTDEG-QIYAWGANSYGQLGTGNK 294
Query: 283 IDFFAPAIVL 292
+ P V+
Sbjct: 295 SNQSYPTPVV 304
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 110/254 (43%), Gaps = 47/254 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 154 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQPIPRRVTGCLQNK 205
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + D E W G NGQLG G++ + P +V L
Sbjct: 206 --VVMNIACGQMCSMAVV------DTGEVYVW--GYNGNGQLGLGSSGNQPTPCRVAAL- 254
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILIS 234
Q + + V CG HT V++ G +++WG + G G N S +P+++
Sbjct: 255 QGIRVQRVACGYAHTLVLTDEGQIYAWGANSYGQLGTGNKSNQSYP--------TPVVVE 306
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDF 285
K + AC +AHT G ++ WG RG+S +L T
Sbjct: 307 -------KDRIIEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVILPHHTHFCCTDDVFAC 359
Query: 286 FAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 360 FATPAVTWRLLSVE 373
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M S+A+ + G +++WG + G L SS TP V G V
Sbjct: 207 VMNIACGQMCSMAVVDTGEVYVWG------YNGNGQLGLGSSGNQPTPCRVAALQGIRVQ 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 261 RVACGYAHTLVLTDEGQIY--------AWGANSYGQLGTGNKSNQSYP 300
>gi|119626424|gb|EAX06019.1| hect domain and RLD 6, isoform CRA_b [Homo sapiens]
Length = 1028
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 115/246 (46%), Gaps = 31/246 (12%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRL 106
P P+ V V+CG EH +A+ G ++WGA + GQLG+G+ +E
Sbjct: 66 PEPIQALETLIVDLVSCGKEHSLAVCHKGRV--------FAWGAGSEGQLGIGEFKEISF 117
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT- 165
PK I T N + +V+CG +H+ L+ +S +++G +GQLG G
Sbjct: 118 TPKKIMTLND---IKIIQVSCGHYHSLALSK--------DSQVFSWGKNSHGQLGLGKEF 166
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
S P++V+ L + + L V G H+ +S G + WG L + RN
Sbjct: 167 PSQASPQRVRSL-EGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSG---RNVPV 222
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ P+ + G V ++CG AHT ++T DG K++++G RSG LG T +
Sbjct: 223 QSNKPLSVGALKNLG-----VVYISCGDAHTAVLTQDG-KVFTFGDNRSGQLGYSPTPEK 276
Query: 286 FAPAIV 291
P +V
Sbjct: 277 RGPQLV 282
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 123/286 (43%), Gaps = 66/286 (23%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHTVVKV 62
V G SLA+ + G ++ WG + +EG + SFTP + + +++V
Sbjct: 80 VSCGKEHSLAVCHKGRVFAWG------AGSEGQLGIGEFKEISFTPKKIMTLNDIKIIQV 133
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWA 121
+CG H +AL +D +SWG N++GQLGLG S+ P+ + + + P A
Sbjct: 134 SCGHYHSLAL--------SKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSL-EGIPLA 184
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWT-FGLGEN--GQL---GHGTTQSALVPEQVK 175
+V G H+ L S+C T FG G N GQL G + P V
Sbjct: 185 --QVAAGGAHSFAL-----------SLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVG 231
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILI 233
L + + +V + CG HT+V++ G V+++G + LG P
Sbjct: 232 AL-KNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPE--------------- 275
Query: 234 SGNGPHGPKFQDPV-----QVACGAAHTVLVTDDGYKLWSWGRGRS 274
GP+ + + Q+ CG+ HT+ ++ S+G G S
Sbjct: 276 ----KRGPQLVERIDGLVSQIDCGSYHTLAYVHTTGQVVSFGHGPS 317
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 12/134 (8%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ G + WG+ + G V S P V VV ++
Sbjct: 183 LAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYIS 242
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H L G+ +++G N +GQLG + P+++E + V
Sbjct: 243 CGDAHTAVLTQDGKV--------FTFGDNRSGQLGYSPTPEKRGPQLVERID----GLVS 290
Query: 124 EVTCGSFHTALLTH 137
++ CGS+HT H
Sbjct: 291 QIDCGSYHTLAYVH 304
>gi|354487926|ref|XP_003506122.1| PREDICTED: RCC1 and BTB domain-containing protein 2 [Cricetulus
griseus]
gi|344253822|gb|EGW09926.1| RCC1 and BTB domain-containing protein 2 [Cricetulus griseus]
Length = 551
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 115/250 (46%), Gaps = 31/250 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 85 STIEPRRLNSLTGKKIASLSYGSGPHIVLATTDGEVF--------TWGHNAYSQLGNGTT 136
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 137 NHGLVPCHIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 186
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q ++++ CG + V G+V+ WG N L
Sbjct: 187 GSTANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGYNG------NGQLGLG 240
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 241 SSGNQPTPCRVA--ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNK 294
Query: 283 IDFFAPAIVL 292
+ P V+
Sbjct: 295 SNQSYPTPVV 304
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 110/254 (43%), Gaps = 47/254 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 154 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQPIPRRVTGCLQNK 205
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + D E W G NGQLG G++ + P +V L
Sbjct: 206 --VVMNIACGQMCSMAVV------DTGEVYVW--GYNGNGQLGLGSSGNQPTPCRVAAL- 254
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILIS 234
Q + + V CG HT V++ G V++WG + G G N S +P+++
Sbjct: 255 QGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYP--------TPVVVE 306
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDF 285
K + AC +AHT G ++ WG RG+S VL T
Sbjct: 307 -------KDRIIEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVVLPHLTHFCCTDDVFAC 359
Query: 286 FAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 360 FATPAVTWRLLSVE 373
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M S+A+ + G +++WG + G L SS TP V G V
Sbjct: 207 VMNIACGQMCSMAVVDTGEVYVWG------YNGNGQLGLGSSGNQPTPCRVAALQGIRVQ 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 261 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYP 300
>gi|198417628|ref|XP_002119426.1| PREDICTED: hect domain and RLD 2 [Ciona intestinalis]
Length = 2335
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 129/281 (45%), Gaps = 41/281 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG ++A+ G ++ WG+ + G S + TP + F + ++CG
Sbjct: 520 AVHSGGRHAMALTYDGHVYSWGD---GEEGKLGHGSRADALTPRKIETFPEKCIRDISCG 576
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H A+ S+G Y+WG G+LG G+ + L+PK ++ S V +V
Sbjct: 577 SSHSAAIGSSG--------TLYTWGHGMYGRLGHGNNHTLLKPKPVQAL---SGQQVVQV 625
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L + + + +++G G+ G+LG G + VP+ V+ L +V
Sbjct: 626 ACGSRDAQTLCLTQ------DGLVYSWGDGDFGKLGRGGSDGCCVPKPVERLSGQ-DVVK 678
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++CG + +S G VW+WG KG LG + + R P ++ G H
Sbjct: 679 IECGAQFSLALSRCGLVWTWG--KGDYFRLGHGSDQHVRR--------PQVVEGLREH-- 726
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
V VA GA H + VT+ G ++++WG G G G T
Sbjct: 727 ---KVVDVAVGALHCLAVTEGG-QVFAWGDNDHGQQGNGGT 763
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 120/267 (44%), Gaps = 40/267 (14%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
D A +++WG L D GG TP D V +V GS+ + A+ G+
Sbjct: 427 DCAAKVFVWG---LNDKDQLGGLKGSKHKTPVASKDLQRLKVTQVIGGSKSLFAVTMGGK 483
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
Y+ G + +G+LGLG + F Q P V G H LT+
Sbjct: 484 V--------YACGESTSGRLGLGPVTGSVSRLTQVLFPQ--PIKKLAVHSGGRHAMALTY 533
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
+ +++G GE G+LGHG+ AL P +++ P+ + + CG H++ +
Sbjct: 534 --------DGHVYSWGDGEEGKLGHGSRADALTPRKIETFPEKC-IRDISCGSSHSAAIG 584
Query: 198 SAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA-- 253
S+G +++W GM LG N +L + + A+S Q VQVACG+
Sbjct: 585 SSGTLYTWGHGMYGRLGHGNNHTLLKPKPVQALSG-------------QQVVQVACGSRD 631
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +T DG ++SWG G G LG G
Sbjct: 632 AQTLCLTQDGL-VYSWGDGDFGKLGRG 657
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 129/293 (44%), Gaps = 43/293 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFT-PSPVWDFHGHTVVKV 62
SV AGG LA+ N G ++ WG +G G SS P + G +VKV
Sbjct: 1498 SVNAGGKHILALSNEGEVYSWGE------GVDGKLGHGNRSSLDHPRIIESLRGDLIVKV 1551
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H A+ + G Y+WG G+LG D E +L+PK++ + V
Sbjct: 1552 ATGGSHSAAINATGG--------LYTWGKGRYGRLGHEDSEDQLKPKLVNALKDN---LV 1600
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CG+ L + S+ W++G G+ G+LG G + VP + L +
Sbjct: 1601 VDVACGNGDAQTLCITEGTGG--SSVVWSWGDGDYGKLGRGGSDGCKVPAIIDTL-MGKH 1657
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGP 238
+ V CG + +S AG V++WG KG LG + + R + +++ + +
Sbjct: 1658 ITHVACGSQFSLALSKAGGVYTWG--KGDYYRLGHGSDEHVRRPKLIESLRGMKV----- 1710
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V+V+ G+ H + D+G +++WG G +G G T P +V
Sbjct: 1711 --------VEVSVGSLHCIAAVDNG-DVYTWGDNDEGQIGDGTTQATQIPRLV 1754
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 118/267 (44%), Gaps = 34/267 (12%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G S AI ++G L+ WG+ +L+ P PV G VV+VA
Sbjct: 570 IRDISCGSSHSAAIGSSGTLYTWGHGMYGRLGHGNNHTLLK---PKPVQALSGQQVVQVA 626
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN-QDSPWAV 122
CGS L +D + YSWG + G+LG G + PK +E + QD V
Sbjct: 627 CGSRDAQTLCLT------QDGLVYSWGDGDFGKLGRGGSDGCCVPKPVERLSGQD----V 676
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + L+ + WT+G G+ +LGHG+ Q P+ V+ L ++
Sbjct: 677 VKIECGAQFSLALSRC--------GLVWTWGKGDYFRLGHGSDQHVRRPQVVEGLREH-K 727
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V G H V+ G V++WG N + G ++ + G G K
Sbjct: 728 VVDVAVGALHCLAVTEGGQVFAWG--------DNDHGQQGNGGTTVNRKPMKVQGLEGVK 779
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSW 269
++ACG++H++ D ++ ++
Sbjct: 780 I---TKLACGSSHSIAFADTSHEAQTF 803
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 110/259 (42%), Gaps = 54/259 (20%)
Query: 42 LVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD 101
L P P+ H+ G H +AL TY G YSWG G+LG G
Sbjct: 507 LTQVLFPQPIKKLAVHS------GGRHAMAL-----TYDGH---VYSWGDGEEGKLGHGS 552
Query: 102 RESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
R L P+ IETF + + +++CGS H+A + +T+G G G+LG
Sbjct: 553 RADALTPRKIETFPEK---CIRDISCGSSHSAAIGS--------SGTLYTWGHGMYGRLG 601
Query: 162 HGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWG------MEKG--LG 212
HG + L P+ V+ L Q V V+ T ++ G V+SWG + +G G
Sbjct: 602 HGNNHTLLKPKPVQALSGQQVVQVACGSRDAQTLCLTQDGLVYSWGDGDFGKLGRGGSDG 661
Query: 213 LCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG 272
C + R +SG QD V++ CGA ++ ++ G +W+WG+G
Sbjct: 662 CCVPKPVER-----------LSG--------QDVVKIECGAQFSLALSRCGL-VWTWGKG 701
Query: 273 RSGVLGTGKTIDFFAPAIV 291
LG G P +V
Sbjct: 702 DYFRLGHGSDQHVRRPQVV 720
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 106/244 (43%), Gaps = 39/244 (15%)
Query: 55 HGH-TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
H H T V V G +H++AL + GE Y SWG +G+LG G+R S P+IIE+
Sbjct: 1491 HVHITQVSVNAGGKHILALSNEGEVY--------SWGEGVDGKLGHGNRSSLDHPRIIES 1542
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
D + +V G H+A + +T+G G G+LGH ++ L P+
Sbjct: 1543 LRGD---LIVKVATGGSHSAAIN--------ATGGLYTWGKGRYGRLGHEDSEDQLKPKL 1591
Query: 174 VKELPQYVYLVSVDCG------LFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDA 227
V L + +V V CG L T + VWSWG L S G
Sbjct: 1592 VNALKDNL-VVDVACGNGDAQTLCITEGTGGSSVVWSWGDGDYGKLGRGGS-----DGCK 1645
Query: 228 ISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
+ I+ + G H VACG+ ++ ++ G +++WG+G LG G
Sbjct: 1646 VPAIIDTLMGKH------ITHVACGSQFSLALSKAG-GVYTWGKGDYYRLGHGSDEHVRR 1698
Query: 288 PAIV 291
P ++
Sbjct: 1699 PKLI 1702
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 102/259 (39%), Gaps = 38/259 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I V GG S AI+ G L+ WG E P V + VV VA
Sbjct: 1548 IVKVATGGSHSAAINATGGLYTWGKGRYGRLGHEDS---EDQLKPKLVNALKDNLVVDVA 1604
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG+ L T G V +SWG + G+LG G + P II+T +
Sbjct: 1605 CGNGDAQTLCITEGT--GGSSVVWSWGDGDYGKLGRGGSDGCKVPAIIDTLMGKH---IT 1659
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
V CGS + L+ +T+G G+ +LGHG+ + P+ ++ L + + +
Sbjct: 1660 HVACGSQFSLALSK--------AGGVYTWGKGDYYRLGHGSDEHVRRPKLIESL-RGMKV 1710
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS-----PILISGNGP 238
V V G H GDV++WG + GD + P L++
Sbjct: 1711 VEVSVGSLHCIAAVDNGDVYTWGDND-----------EGQIGDGTTQATQIPRLVAALQG 1759
Query: 239 HGPKFQDPVQVACGAAHTV 257
H V+CG+AHTV
Sbjct: 1760 HHIS-----HVSCGSAHTV 1773
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 27/219 (12%)
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
T GE V ++ G G+LG+G ES P +IE+ Q V G H L++
Sbjct: 1454 TVTGEGKV-FATGYGAGGRLGIGSNESVAIPTLIESI-QHVHITQVSVNAGGKHILALSN 1511
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
E +++G G +G+LGHG S P ++ L + +V V G H++ ++
Sbjct: 1512 --------EGEVYSWGEGVDGKLGHGNRSSLDHPRIIESL-RGDLIVKVATGGSHSAAIN 1562
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AH 255
+ G +++WG + L ++ D + P L++ K V VACG A
Sbjct: 1563 ATGGLYTWGKGR------YGRLGHEDSEDQLKPKLVN-----ALKDNLVVDVACGNGDAQ 1611
Query: 256 TVLVTD---DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
T+ +T+ +WSWG G G LG G + PAI+
Sbjct: 1612 TLCITEGTGGSSVVWSWGDGDYGKLGRGGSDGCKVPAII 1650
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 83/208 (39%), Gaps = 29/208 (13%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
+ WG N+ QLG G + S+ + + Q V +V GS +T +
Sbjct: 433 FVWGLNDKDQLG-GLKGSKHKTPVASKDLQR--LKVTQVIGGSKSLFAVT--------MG 481
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ G +G+LG G ++ PQ + ++V G H ++ G V+SWG
Sbjct: 482 GKVYACGESTSGRLGLGPVTGSVSRLTQVLFPQPIKKLAVHSGGRHAMALTYDGHVYSWG 541
Query: 207 M-EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV--QVACGAAHTVLVTDDG 263
E+G L DA++P I F + ++CG++H+ + G
Sbjct: 542 DGEEG-------KLGHGSRADALTPRKIE-------TFPEKCIRDISCGSSHSAAIGSSG 587
Query: 264 YKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
L++WG G G LG G P V
Sbjct: 588 -TLYTWGHGMYGRLGHGNNHTLLKPKPV 614
>gi|145351110|ref|XP_001419929.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580162|gb|ABO98222.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 783
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 109/245 (44%), Gaps = 48/245 (19%)
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G VV+V+CG H + G C++WG + LG GDRE + P+ +ETF
Sbjct: 194 GVKVVQVSCGPCHTACVTETG--------ACFTWGEGSFYALGHGDRECQRAPRELETFR 245
Query: 116 QDSPWAVYEVTCGSFHTALL------THRKRPN-------DMLESMCWTFGLGENGQLGH 162
+D+ V V CG +HTA + T RK P D ++ +T+G GE+GQLG
Sbjct: 246 RDN-RVVLRVACGVWHTAAIVAAVGNTIRKVPVVADDDEFDTVDGELFTWGDGESGQLGI 304
Query: 163 GTTQSALVPEQVKEL--PQYVYLVSVDCGLFHTSVVSSAGDVWSWG----MEKGLGLCPN 216
+ A VP + + +V CG HT ++S GDVW G ++ L +
Sbjct: 305 RGVEEASVPTATSDQLGKPGSEVCNVSCGQHHTVALTSKGDVWLAGCVGKVDNSLRVKVF 364
Query: 217 ASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGV 276
L E G + V G H V T DG +++SWG G++G
Sbjct: 365 TRLPNFETGSVSA-------------------VESGDNHVVAATRDG-RVFSWGVGKNGR 404
Query: 277 LGTGK 281
LG GK
Sbjct: 405 LGHGK 409
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 90/209 (43%), Gaps = 30/209 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ + G LA AGA++ WG G L S+ P+ V + G V
Sbjct: 76 VVEIAIGARHGLARTRAGAVYSWGE------GAGGKLGLPSAQDAEMPTRV-ELDGRAVT 128
Query: 61 KVACGSEHVVALV-SAGETYKGEDLVCYSWGANNNGQLGLGDRESR---LRPKIIETFNQ 116
+ACG H +A+V A + G+ WG N LG E+R P I +F
Sbjct: 129 -LACGVAHSLAVVRDADASSDGDGGDACVWGDPNAAPGLLGRPEARAVTFFPGKI-SFAM 186
Query: 117 DSPWA-----VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
DS A V +V+CG HTA +T C+T+G G LGHG + P
Sbjct: 187 DSISAGGGVKVVQVSCGPCHTACVTE--------TGACFTWGEGSFYALGHGDRECQRAP 238
Query: 172 EQVKELPQYVYLV-SVDCGLFHTSVVSSA 199
+++ + +V V CG++HT+ + +A
Sbjct: 239 RELETFRRDNRVVLRVACGVWHTAAIVAA 267
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S++C+V G ++A+ + G +W+ G D+S V FT P +F +V
Sbjct: 325 SEVCNVSCGQHHTVALTSKGDVWLAGCVGKVDNSLR-----VKVFTRLP--NFETGSVSA 377
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG--DRESRLRPKIIETFNQDSP 119
V G HVVA G +SWG NG+LG G DR+ + P+ IE+ +
Sbjct: 378 VESGDNHVVAATRDGRV--------FSWGVGKNGRLGHGKNDRD-KAAPEEIESLRGRT- 427
Query: 120 WAVYEVTCGSFHTALL 135
V + CG +A +
Sbjct: 428 --VLRIACGPTSSACV 441
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 92/256 (35%), Gaps = 72/256 (28%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS------SFTPSPVWDFH- 55
++ V G + + GA + WG EG F + P + F
Sbjct: 196 KVVQVSCGPCHTACVTETGACFTWG---------EGSFYALGHGDRECQRAPRELETFRR 246
Query: 56 -GHTVVKVACGSEHVVALVSA-GETYKGEDLVC------------YSWGANNNGQLGLGD 101
V++VACG H A+V+A G T + +V ++WG +GQLG+
Sbjct: 247 DNRVVLRVACGVWHTAAIVAAVGNTIRKVPVVADDDEFDTVDGELFTWGDGESGQLGIRG 306
Query: 102 RESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHR----------------------K 139
E P V V+CG HT LT + +
Sbjct: 307 VEEASVPTATSDQLGKPGSEVCNVSCGQHHTVALTSKGDVWLAGCVGKVDNSLRVKVFTR 366
Query: 140 RPN------DMLES------------MCWTFGLGENGQLGHGTT-QSALVPEQVKELPQY 180
PN +ES +++G+G+NG+LGHG + PE+++ L
Sbjct: 367 LPNFETGSVSAVESGDNHVVAATRDGRVFSWGVGKNGRLGHGKNDRDKAAPEEIESLRGR 426
Query: 181 VYLVSVDCGLFHTSVV 196
L + CG ++ V
Sbjct: 427 TVL-RIACGPTSSACV 441
>gi|27882442|gb|AAH44667.1| Herc2 protein, partial [Mus musculus]
Length = 1183
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 392 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 448
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 449 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VIDI 497
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 498 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGV 548
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R G
Sbjct: 549 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRRPR----------QVQGLQ 596
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 597 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 644
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 441 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 494
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 495 IDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 545
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 546 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 596
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 597 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAAL- 647
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 648 -QGKKVN---RVACGSAHTL 663
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 294 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 350
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ V V G H
Sbjct: 351 ADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKV-AVNSGGKHCL 401
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 402 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 452
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H + +ACG+
Sbjct: 453 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVIDIACGS 501
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 502 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 529
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 304 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 341
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 342 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 400
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 401 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 447
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 448 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 486
>gi|403303292|ref|XP_003942270.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 1
[Saimiri boliviensis boliviensis]
Length = 551
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 106/225 (47%), Gaps = 34/225 (15%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
K+AC S H+V + GE + +WG N QLG G L P I T
Sbjct: 99 KIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTTNHGLVPCHIST--N 148
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V EV CGS+H+ +LT E W G +GQ+G G+T + +P +V
Sbjct: 149 LSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGSGSTINQPIPRRVTG 200
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q +V++ CG V +G+V+ WG N L +G+ +P ++
Sbjct: 201 CLQNKVVVTIACGQMCCMAVVDSGEVYVWGYNG------NGQLGLGNSGNQPTPCRVA-- 252
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 253 ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGN 293
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 106/259 (40%), Gaps = 57/259 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 154 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTINQPIPRRVTGCLQNK 205
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + D E W G NGQLG G + + P +V L
Sbjct: 206 --VVVTIACGQMCCMAVV------DSGEVYVW--GYNGNGQLGLGNSGNQPTPCRVAAL- 254
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + V CG HT V++ G V++WG N G L +GN
Sbjct: 255 QGIRVQRVACGYAHTLVLTDEGQVYAWGA--------------NSYGQ-----LGTGNKS 295
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTG 280
+ + PV V AC + HT G ++ WG RG+S +L T
Sbjct: 296 N-QSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTD 354
Query: 281 KTIDFFAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 355 DVFACFATPAVTWRLLSVE 373
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ ++G +++WG + G L +S TP V G V
Sbjct: 207 VVTIACGQMCCMAVVDSGEVYVWG------YNGNGQLGLGNSGNQPTPCRVAALQGIRVQ 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + T +D
Sbjct: 261 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPV-TVEKDRII 311
Query: 121 AVYEVTCGSFHTA 133
+ C S HT+
Sbjct: 312 EI--AACHSTHTS 322
>gi|300122796|emb|CBK23812.2| unnamed protein product [Blastocystis hominis]
Length = 797
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 34/209 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCP-----LPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ VK G S A+ G L+ WG+ P L + + +V P
Sbjct: 139 RLAEVKTTGKASFALATTGELYSWGDGPAGELGLGEPVRQSQAEIVVRLLP--------R 190
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+VKVACG+ HV+AL S G ++WG N GQLGLGDR +R P + +
Sbjct: 191 QIVKVACGASHVLALDSEG--------ALFAWGGNQFGQLGLGDRRNRAEPVRVVALKKQ 242
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ ++ G +A+L + WT GL E GQ G ++ +P V+++
Sbjct: 243 H---IVDIAAGDGFSAVLDD--------HGVVWTMGLNELGQCGSNASREVGIPSAVRQV 291
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
P S+ CG H + G+V +WG
Sbjct: 292 PSAAQ--SLACGQSHVLALCKEGEVVTWG 318
>gi|332841362|ref|XP_003314204.1| PREDICTED: RCC1 and BTB domain-containing protein 2, partial [Pan
troglodytes]
Length = 552
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 115/249 (46%), Gaps = 31/249 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + +G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 88 STIEPRRLDSLNGKKIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTT 139
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT + + +G +GQ+G
Sbjct: 140 NHGLVPCHIST--NLSNKQVIEVACGSYHSLVLTS--------DGEVFAWGYNNSGQVGS 189
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q +V++ CG V G+V+ WG N L
Sbjct: 190 GSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNG------NGQLGLG 243
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 244 NSGNQPTPCRVA--ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNK 297
Query: 283 IDFFAPAIV 291
+ P V
Sbjct: 298 SNQSYPTPV 306
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 106/259 (40%), Gaps = 57/259 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 157 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNK 208
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + D E W G NGQLG G + + P +V L
Sbjct: 209 --VVVTIACGQMCCMAVV------DTGEVYVW--GYNGNGQLGLGNSGNQPTPCRVAAL- 257
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + V CG HT V++ G V++WG N G L +GN
Sbjct: 258 QGIRVQRVACGYAHTLVLTDEGQVYAWGA--------------NSYGQ-----LGTGNKS 298
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTG 280
+ + PV V AC + HT G ++ WG RG+S +L T
Sbjct: 299 N-QSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTD 357
Query: 281 KTIDFFAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 358 DVFACFATPAVTWRLLSVE 376
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ + G +++WG + G L +S TP V G V
Sbjct: 210 VVTIACGQMCCMAVVDTGEVYVWG------YNGNGQLGLGNSGNQPTPCRVAALQGIRVQ 263
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + T +D
Sbjct: 264 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPV-TVEKDRII 314
Query: 121 AVYEVTCGSFHTA 133
+ C S HT+
Sbjct: 315 EI--AACHSTHTS 325
>gi|125821491|ref|XP_698091.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Danio
rerio]
Length = 4846
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 119/453 (26%), Positives = 185/453 (40%), Gaps = 89/453 (19%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLP-----DSSTEGGFSLVSSFTPSPVWDFH 55
+ ++ S K +LA + G ++ WG+ +SST+ L+
Sbjct: 452 IKKVSSSKGSDGHTLAFTSEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQG-------PLQ 504
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G VV V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 505 GKVVVCVSAGYRHSAAVSEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDIS 556
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ V+
Sbjct: 557 N-----VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVVE 604
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q +++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 605 AL-QGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEE 656
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
V ++ G +H + ++ D ++++WG G G G + P
Sbjct: 657 LA-----TTRVVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------P 700
Query: 296 LTEEFKQDELNTGGLDDEIKTKDLEG--------AEERDEKLSS-------AMEEMKLLQ 340
+T+ K GLD + G A RD ++ + +EE
Sbjct: 701 ITKPKK-----VIGLDGVAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSH 755
Query: 341 SKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRS 394
+ S +ERY ++ I PF P S + F + + N L A S
Sbjct: 756 LR-SFLERYCDGINNEIPPLPF------PSSKEHHNFLKLCLRLLSNHLALALAGGVATS 808
Query: 395 KLVRLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
L R R RN+L + D + IQE V E L
Sbjct: 809 ILGRQARPLRNLLFRLMDASVPDEIQEAVIETL 841
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 123/250 (49%), Gaps = 40/250 (16%)
Query: 58 TVVKVACGSE-HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
T + +CGS+ H +AL +GE + SWG + G+LG G+ + + RP+ IE
Sbjct: 4067 TQMVTSCGSDGHSMALTESGEVF--------SWGDGDYGKLGHGNSDRQRRPRQIEALQG 4118
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ V +++CG H+A++T + ++FG G+ G+LG G T + +PE+V
Sbjct: 4119 EE---VVQMSCGFKHSAVVTS--------DGKLFSFGNGDYGRLGLGNTSNKKLPERVSA 4167
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAG-DVWSWGMEK--GLGLCPNASLTRNEAGDAISPILI 233
L + + V CGL HT VS+ G VW++G LGL + + + + D + I I
Sbjct: 4168 LEGH-QVGQVACGLNHTLAVSADGMTVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGI 4226
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
+VACG +V +T DG ++++G+ R L G+ + P V
Sbjct: 4227 K-------------KVACGTQFSVALTKDG-NVYTFGQDRLIGLPEGRARNHNRPQQV-- 4270
Query: 294 PPLTEEFKQD 303
P LT F +D
Sbjct: 4271 PALTGVFIED 4280
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4079 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4135
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + S+G + G+LGLG+ ++ P+ + V +V CG HT
Sbjct: 4136 SDGKLF--------SFGNGDYGRLGLGNTSNKKLPERVSALEGHQ---VGQVACGLNHTL 4184
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ + M W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4185 AVS----ADGM---TVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4236
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G+V+++G ++ +GL P RN P L G +D VA GA
Sbjct: 4237 VALTKDGNVYTFGQDRLIGL-PEGR-ARNHNRPQQVPALT------GVFIED---VAVGA 4285
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ ++ G +++WG G LG G T P ++
Sbjct: 4286 EHTLTLSSTG-DVYAWGSNSEGQLGLGHTNHVREPTLI 4322
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 96/203 (47%), Gaps = 23/203 (11%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGS-FHTALLTHRKRPNDMLESM 148
G + G+LGLGD ++ K + TF + GS HT T E
Sbjct: 423 GKGSYGRLGLGDSNNQSTLKKL-TFEPHRAIKKVSSSKGSDGHTLAFTS--------EGE 473
Query: 149 CWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ VS G++++WG E
Sbjct: 474 VFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVSEDGELYTWG-E 532
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
G L ++ P L+ G +V+CG++HT+ ++ DG +WS
Sbjct: 533 GDFG-----RLGHGDSNSRNIPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWS 580
Query: 269 WGRGRSGVLGTGKTIDFFAPAIV 291
+G G +G LG G T + P +V
Sbjct: 581 FGGGDNGKLGHGDTNRVYKPKVV 603
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 24/213 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + G S + + G L+ +GN D G + + P V GH V +V
Sbjct: 4120 EVVQMSCGFKHSAVVTSDGKLFSFGN---GDYGRLGLGNTSNKKLPERVSALEGHQVGQV 4176
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG H +A+ + G T +++G + G+LGLG+ ++ P+ ++ +
Sbjct: 4177 ACGLNHTLAVSADGMTV-------WAFGDGDYGKLGLGNSTAKSSPQKVDVL---CGIGI 4226
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CG+ + LT + +TFG L G ++ P+QV L V+
Sbjct: 4227 KKVACGTQFSVALTK--------DGNVYTFGQDRLIGLPEGRARNHNRPQQVPAL-TGVF 4277
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGL 213
+ V G HT +SS GDV++WG E LGL
Sbjct: 4278 IEDVAVGAEHTLTLSSTGDVYAWGSNSEGQLGL 4310
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 20/141 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P V G +
Sbjct: 4226 IKKVACGTQFSVALTKDGNVYTFGQDRLIGLPEGRAR------NHNRPQQVPALTGVFIE 4279
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH + L S G+ Y +WG+N+ GQLGLG P +I +
Sbjct: 4280 DVAVGAEHTLTLSSTGDVY--------AWGSNSEGQLGLGHTNHVREPTLISALQGKN-- 4329
Query: 121 AVYEVTCGSFHTALLTHRKRP 141
+ +++ G H+A T P
Sbjct: 4330 -IQQISAGRCHSAAWTAPPVP 4349
>gi|344239412|gb|EGV95515.1| putative E3 ubiquitin-protein ligase HERC2 [Cricetulus griseus]
Length = 958
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 126/288 (43%), Gaps = 37/288 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 314 AVNSGGKHCLALSSEGEVYSWGEA---EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 370
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 371 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VIDI 419
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 420 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGV 470
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
V V+CG + ++ +G V++WG KG + G + G +
Sbjct: 471 VKVECGSQFSVALTKSGAVYTWG--KG---------DYHRLGHGSDDHVRRPRQVQGLQG 519
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 520 KKVIAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 566
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 363 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 416
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 417 IDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 467
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 468 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 518
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 519 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVA--A 568
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 569 LQGKKVN---RVACGSAHTL 585
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 35/269 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+L+ +G ++ WG+ GG P+P V++ G + + A+
Sbjct: 216 TLSAGGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 272
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ Y+ G G+LG+G ES P ++E+ V V G H
Sbjct: 273 ADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKV-AVNSGGKHCL 323
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L+ E +++G E+G+LGHG P ++ L + + +V V G H+
Sbjct: 324 ALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGGAHS 374
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ V++AGD+++WG + L +++ D + P L+ H + +ACG+
Sbjct: 375 ACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVIDIACGS 423
Query: 254 --AHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A T+ +TDD +WSWG G G LG G
Sbjct: 424 GDAQTLCLTDDD-TVWSWGDGDYGKLGRG 451
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG N+ GQLG IE P C + T RP ++
Sbjct: 226 YGWGHNHRGQLG-----------GIEGAKVKVP-----TPCEALATL------RPVQLIG 263
Query: 147 SMCWTFGLGENGQL-----------GHGTTQSALVPEQVKELPQYVYL--VSVDCGLFHT 193
F + +G+L G G T+S P ++ + Q+V++ V+V+ G H
Sbjct: 264 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHC 322
Query: 194 SVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
+SS G+V+SWG E G LG + R +++ I + V VA
Sbjct: 323 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV-------------VDVAA 369
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G AH+ VT G L++WG+GR G LG + D P +V
Sbjct: 370 GGAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLV 408
>gi|297810989|ref|XP_002873378.1| hypothetical protein ARALYDRAFT_487713 [Arabidopsis lyrata subsp.
lyrata]
gi|297319215|gb|EFH49637.1| hypothetical protein ARALYDRAFT_487713 [Arabidopsis lyrata subsp.
lyrata]
Length = 434
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 125/303 (41%), Gaps = 44/303 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHTVV 60
I + AG S AI G L+MWG +SS + G ++ P+ V HG T+
Sbjct: 136 ILHISAGYYHSAAITVDGELYMWGK----NSSGQLGLGKKAARVVRVPTKVEALHGITIQ 191
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQL-GLGDRESRLRPKIIETFNQDSP 119
VA GSEH VA+ GE G + L G+ S P++I+
Sbjct: 192 SVALGSEHSVAVTDGGEVLSWGGGGSGRLGHGHQSSLFGILRSNSEFTPRLIKELE---G 248
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V V G H+A + FG ++G G ++A P + E+P
Sbjct: 249 IKVKNVAAGLLHSACTDE--------NGSAFMFGERSINKMGFGGVRNATTPSIISEVP- 299
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
Y V CG +HT VV+ G++++WG + N L + + SP+ +
Sbjct: 300 --YAEGVACGGYHTCVVTRGGELYTWGSNE------NGCLGTDSTYVSHSPVRV-----E 346
Query: 240 GPKFQDPV-QVACGAAHTVLVTDDGYKLWSW----------GRGRSGVLGTGKTIDFFAP 288
GP + V QV+CG HT ++D+ W W G G LG G +D+ P
Sbjct: 347 GPFLESTVSQVSCGWKHTAAISDNKVFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYARP 406
Query: 289 AIV 291
A+V
Sbjct: 407 AMV 409
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 103/251 (41%), Gaps = 37/251 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR--PKIIETFNQ 116
++ ++ G H A+ GE Y WG N++GQLGLG + +R+ P +E +
Sbjct: 136 ILHISAGYYHSAAITVDGELYM--------WGKNSSGQLGLGKKAARVVRVPTKVEALHG 187
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQL-GHGTTQSALVPEQVK 175
+ + V GS H+ +T G G L G + S P +K
Sbjct: 188 IT---IQSVALGSEHSVAVTDGGEVLSWGGGGSGRLGHGHQSSLFGILRSNSEFTPRLIK 244
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPI 231
EL + + + +V GL H++ G + +G G G NA+ +P
Sbjct: 245 EL-EGIKVKNVAAGLLHSACTDENGSAFMFGERSINKMGFGGVRNAT----------TPS 293
Query: 232 LISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+IS + VACG HT +VT G +L++WG +G LGT T +P V
Sbjct: 294 IIS-------EVPYAEGVACGGYHTCVVTRGG-ELYTWGSNENGCLGTDSTYVSHSPVRV 345
Query: 292 LWPPLTEEFKQ 302
P L Q
Sbjct: 346 EGPFLESTVSQ 356
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 27/178 (15%)
Query: 89 WGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESM 148
WG+ + G+LGLG+ +S+ P + S + V CG HT LT +R
Sbjct: 54 WGSGDYGRLGLGNLDSQWTPAGCSALSDHS---IRAVACGGAHTLFLTETRR-------- 102
Query: 149 CWTFGLGENGQLGHGTTQS-ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM 207
+ GL + GQLG +S A+ P +V L + + +S G +H++ ++ G+++ WG
Sbjct: 103 VFATGLNDCGQLGVSDVKSHAMDPLEVSGLDKDILHISA--GYYHSAAITVDGELYMWGK 160
Query: 208 EKG--LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
LGL A+ + + HG Q VA G+ H+V VTD G
Sbjct: 161 NSSGQLGLGKKAA--------RVVRVPTKVEALHGITIQ---SVALGSEHSVAVTDGG 207
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 27/181 (14%)
Query: 25 MWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDL 84
MWG+ D G +L S +TP+ H++ VACG H + L E
Sbjct: 53 MWGS---GDYGRLGLGNLDSQWTPAGCSALSDHSIRAVACGGAHTLFLT--------ETR 101
Query: 85 VCYSWGANNNGQLGLGDRESR-LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPND 143
++ G N+ GQLG+ D +S + P + ++D + ++ G +H+A +T
Sbjct: 102 RVFATGLNDCGQLGVSDVKSHAMDPLEVSGLDKD----ILHISAGYYHSAAIT------- 150
Query: 144 MLESMCWTFGLGENGQLGHGTTQSAL--VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
++ + +G +GQLG G + + VP +V+ L + + SV G H+ V+ G+
Sbjct: 151 -VDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEAL-HGITIQSVALGSEHSVAVTDGGE 208
Query: 202 V 202
V
Sbjct: 209 V 209
>gi|386724712|ref|YP_006191038.1| hypothetical protein B2K_21665 [Paenibacillus mucilaginosus K02]
gi|384091837|gb|AFH63273.1| hypothetical protein B2K_21665 [Paenibacillus mucilaginosus K02]
Length = 338
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 128/294 (43%), Gaps = 48/294 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ + + AGG S A+ + G W WG+ L D +T TP V H
Sbjct: 29 LDSVIGISAGGAASFAVRSDGTAWAWGSNLFGQLGDGTT------YDRLTPVQVQGL--H 80
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+VV + GS H +A+ + G ++WG N GQLG G +SR P +E +
Sbjct: 81 SVVALEAGSSHSLAVKADGS--------VWAWGWNTYGQLGDGTTDSRSTPVQVEGLD-- 130
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+V V GS H+ + + W +G +GQLG GT + VP QV L
Sbjct: 131 ---SVVAVAAGSGHSLAV--------KADGSVWAWGANWSGQLGDGTYTESTVPVQVTGL 179
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+VSV G +S + S G VW+WG L + A ++ SP+ ++G
Sbjct: 180 GS---VVSVSAGNTFSSALKSDGTVWAWGANDSGQLG-----SETAASNSPSPVQVTG-- 229
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ G+ +++ + +DG +W+WG SG LG G T AP V
Sbjct: 230 -----MASAAAISSGSDYSLALKNDG-TVWAWGYNSSGQLGNGTTTSSSAPVQV 277
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 92/205 (44%), Gaps = 30/205 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
++WGAN+N QLG G + R P I N DS V ++ G A R +
Sbjct: 2 WAWGANSNAQLGDGTKTDRYSP--IPVKNLDS---VIGISAGG--AASFAVRS------D 48
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
W +G GQLG GTT L P QV+ L +V+++ G H+ V + G VW+WG
Sbjct: 49 GTAWAWGSNLFGQLGDGTTYDRLTPVQVQGLHS---VVALEAGSSHSLAVKADGSVWAWG 105
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L + +R+ +P+ + G V VA G+ H++ V DG +
Sbjct: 106 WNTYGQLGDGTTDSRS------TPVQVEG-------LDSVVAVAAGSGHSLAVKADG-SV 151
Query: 267 WSWGRGRSGVLGTGKTIDFFAPAIV 291
W+WG SG LG G + P V
Sbjct: 152 WAWGANWSGQLGDGTYTESTVPVQV 176
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 84/206 (40%), Gaps = 28/206 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + +V AG SLA+ G++W WG S G + S P V +VV
Sbjct: 129 LDSVVAVAAGSGHSLAVKADGSVWAWG---ANWSGQLGDGTYTESTVPVQVTGLG--SVV 183
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V+ G+ AL S D ++WGAN++GQLG ET +SP
Sbjct: 184 SVSAGNTFSSALKS--------DGTVWAWGANDSGQLG------------SETAASNSPS 223
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V S + W +G +GQLG+GTT S+ P QV L
Sbjct: 224 PVQVTGMASAAAISSGSDYSLALKNDGTVWAWGYNSSGQLGNGTTTSSSAPVQVTRLGS- 282
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWG 206
+VSV G H V S G VW WG
Sbjct: 283 --VVSVAAGPLHGLAVQSGGTVWDWG 306
>gi|119629205|gb|EAX08800.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 2, isoform CRA_b [Homo sapiens]
Length = 310
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 114/249 (45%), Gaps = 31/249 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + +G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 85 STIEPRRLDSLNGKKIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTT 136
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 137 NHGLVPCHIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 186
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q +V++ CG V G+V+ WG N L
Sbjct: 187 GSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNG------NGQLGLG 240
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 241 NSGNQPTPCRVAA--LQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNK 294
Query: 283 IDFFAPAIV 291
+ P V
Sbjct: 295 SNQSYPTPV 303
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 17/108 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ + G +++WG + G L +S TP V G V
Sbjct: 207 VVTIACGQMCCMAVVDTGEVYVWG------YNGNGQLGLGNSGNQPTPCRVAALQGIRVQ 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 261 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYP 300
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 15/140 (10%)
Query: 152 FGLGEN--GQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
F LG N G LG G QS + P ++ L + + +S G H + ++ G+V++WG
Sbjct: 68 FVLGTNCCGCLGLGDVQSTIEPRRLDSLNGKKIACLSYGSGP-HIVLATTEGEVFTWGHN 126
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L + P IS N + + ++VACG+ H++++T DG ++++
Sbjct: 127 A------YSQLGNGTTNHGLVPCHISTNLSN----KQVIEVACGSYHSLVLTSDG-EVFA 175
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG SG +G+G T++ P
Sbjct: 176 WGYNNSGQVGSGSTVNQPIP 195
>gi|302804446|ref|XP_002983975.1| hypothetical protein SELMODRAFT_119181 [Selaginella moellendorffii]
gi|300148327|gb|EFJ14987.1| hypothetical protein SELMODRAFT_119181 [Selaginella moellendorffii]
Length = 435
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 115/270 (42%), Gaps = 46/270 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN--------CPLPDSSTEGGFSLVSSFTPSPVWDF 54
+I V AGG S A+ +G L+ WG PD EG S + V
Sbjct: 188 RIVHVSAGGSHSAAVTESGELYTWGRDEGEGRLGHGNPDIMDEGALSRPTKVQALDV--- 244
Query: 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
+ V CG +AL +G+ +SWG N N +LG G R + +PK++
Sbjct: 245 ---PIASVYCGGFFTMALTKSGQ--------LWSWGGNANHELGHGTRANNWKPKVVAAL 293
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
+ + +V CG FH A LT + T+G G NGQLGHGT ++ P V
Sbjct: 294 EDVT---LVQVACGGFHAAALTQ--------DGKVITWGYGGNGQLGHGTLENGKEPAIV 342
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGL-CPNASLTRNEAGDAISPILI 233
+ + + CG T+ ++ GD+++WG + L P + + P+L+
Sbjct: 343 EAMADKT-CTYIACGPAWTAAITENGDLYTWGKNRDYQLGIPGLK------DEQLDPVLV 395
Query: 234 SGNGPHGPKFQDPVQ---VACGAAHTVLVT 260
P + PV+ V+CGA H V +
Sbjct: 396 --QFPQALHEKTPVEVLGVSCGANHGVCIV 423
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 128/308 (41%), Gaps = 47/308 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF--SLVSSFTPSPVWDFHGHT 58
+ ++ AGG+ ++A+ G ++ WG + G + L+ P D
Sbjct: 134 IKRVQMASAGGLHNIALTEVGNVYTWGYGAF-GALGHGSYERELLPRLLEGPWKD----R 188
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGAN-NNGQLGLG-----DRESRLRPKIIE 112
+V V+ G H A+ +GE Y+WG + G+LG G D + RP ++
Sbjct: 189 IVHVSAGGSHSAAVTESGE--------LYTWGRDEGEGRLGHGNPDIMDEGALSRPTKVQ 240
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPE 172
D P + V CG F T LT W++G N +LGHGT + P+
Sbjct: 241 AL--DVP--IASVYCGGFFTMALTK--------SGQLWSWGGNANHELGHGTRANNWKPK 288
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
V L + V LV V CG FH + ++ G V +WG N L + P +
Sbjct: 289 VVAAL-EDVTLVQVACGGFHAAALTQDGKVITWGYGG------NGQLGHGTLENGKEPAI 341
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT-GKTIDFFAPAIV 291
+ + +ACG A T +T++G L++WG+ R LG G + P +V
Sbjct: 342 VEAMADKTCTY-----IACGPAWTAAITENG-DLYTWGKNRDYQLGIPGLKDEQLDPVLV 395
Query: 292 LWPPLTEE 299
+P E
Sbjct: 396 QFPQALHE 403
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 120/303 (39%), Gaps = 72/303 (23%)
Query: 73 VSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET-----FNQDSP-------- 119
VS+GE +L ++WG +GQ+G G ++ P +I T F +P
Sbjct: 27 VSSGEP---AELEVWAWGRGTHGQVGHGSEDTEKLPVLISTLKLAAFTGMAPIQGRMPAK 83
Query: 120 --WAVYEVTCGSFHTALLT-----------------------HRKRPNDMLESM------ 148
VTCG FH+ L ++ N ++ +
Sbjct: 84 PRLGNVGVTCGLFHSVLFAEQDVFVWGKGDGGRLGIDTEFNQYKPYVNPRIKRVQMASAG 143
Query: 149 ------------CWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
+T+G G G LGHG+ + L+P ++ E P +V V G H++ V
Sbjct: 144 GLHNIALTEVGNVYTWGYGAFGALGHGSYERELLP-RLLEGPWKDRIVHVSAGGSHSAAV 202
Query: 197 SSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV-QVACGAAH 255
+ +G++++WG ++G G + + + G P + P+ V CG
Sbjct: 203 TESGELYTWGRDEGEGRLGHGNPDIMDEGALSRPTKVQ-------ALDVPIASVYCGGFF 255
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIK 315
T+ +T G +LWSWG + LG G + + P +V E+ ++ GG
Sbjct: 256 TMALTKSG-QLWSWGGNANHELGHGTRANNWKPKVV---AALEDVTLVQVACGGFHAAAL 311
Query: 316 TKD 318
T+D
Sbjct: 312 TQD 314
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 32/177 (18%)
Query: 135 LTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL----------- 183
L R + E W +G G +GQ+GHG+ + +P + L +
Sbjct: 23 LADRVSSGEPAELEVWAWGRGTHGQVGHGSEDTEKLPVLISTLKLAAFTGMAPIQGRMPA 82
Query: 184 ------VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
V V CGLFH SV+ + DV+ WG G L + + + P +
Sbjct: 83 KPRLGNVGVTCGLFH-SVLFAEQDVFVWGKGDGGRLGIDTEFNQYK------PYV----- 130
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
P+ + + G H + +T+ G +++WG G G LG G P ++ P
Sbjct: 131 --NPRIKRVQMASAGGLHNIALTEVG-NVYTWGYGAFGALGHGSYERELLPRLLEGP 184
>gi|148703915|gb|EDL35862.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 2, isoform CRA_b [Mus musculus]
gi|148703916|gb|EDL35863.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 2, isoform CRA_b [Mus musculus]
Length = 560
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 115/250 (46%), Gaps = 31/250 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 94 STIEPRRLDSLTGKKIASLSYGSGPHIVLATTDGEVF--------TWGHNAYSQLGNGTT 145
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 146 NHGLVPCHIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 195
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q ++++ CG + V G+V+ WG N L
Sbjct: 196 GSTANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGYNG------NGQLGLG 249
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 250 SSGNQPTPCRVAA--LQGIRVQ---RVACGYAHTLVLTDEG-QIYAWGANSYGQLGTGNK 303
Query: 283 IDFFAPAIVL 292
+ P V+
Sbjct: 304 SNQSYPTPVV 313
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 110/254 (43%), Gaps = 47/254 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 163 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQPIPRRVTGCLQNK 214
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + D E W G NGQLG G++ + P +V L
Sbjct: 215 --VVMNIACGQMCSMAVV------DTGEVYVW--GYNGNGQLGLGSSGNQPTPCRVAAL- 263
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILIS 234
Q + + V CG HT V++ G +++WG + G G N S +P+++
Sbjct: 264 QGIRVQRVACGYAHTLVLTDEGQIYAWGANSYGQLGTGNKSNQSYP--------TPVVVE 315
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDF 285
K + AC +AHT G ++ WG RG+S +L T
Sbjct: 316 -------KDRIIEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVILPHHTHFCCTDDVFAC 368
Query: 286 FAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 369 FATPAVTWRLLSVE 382
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M S+A+ + G +++WG + G L SS TP V G V
Sbjct: 216 VMNIACGQMCSMAVVDTGEVYVWG------YNGNGQLGLGSSGNQPTPCRVAALQGIRVQ 269
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 270 RVACGYAHTLVLTDEGQIY--------AWGANSYGQLGTGNKSNQSYP 309
>gi|47216552|emb|CAG04730.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1036
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 113/244 (46%), Gaps = 44/244 (18%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
FHG V V CG +H V L+ G Y + G N+ GQLG +SR +P+ +
Sbjct: 31 FHGKRVCDVGCGLKHTVFLLDDGTVY--------TCGCNDLGQLG--HEKSRKKPEHVVA 80
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL-VPE 172
+ + V+CG HT L ND + W GLG NGQLG + + VP
Sbjct: 81 LDAQ---IIVAVSCGESHTLAL------NDKGQVFSW--GLGSNGQLGLNNFEECVRVPR 129
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAI 228
+K L V + V CG +H+ +S G V+SWG + GLG+ G +I
Sbjct: 130 NIKCLSD-VQIAQVACGYWHSHALSKGGQVFSWGQNQFGQLGLGM----------HGSSI 178
Query: 229 S-PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
S P +I G F Q++ G AH+ +T G ++ WG+ + G LG T D +
Sbjct: 179 STPQII--QSLQGIPF---AQLSAGGAHSFAITLSG-AVFGWGKNKFGQLGLNDTKDRWF 232
Query: 288 PAIV 291
PA++
Sbjct: 233 PALL 236
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 78/187 (41%), Gaps = 22/187 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G S A+ G ++ WG S +S TP + G ++
Sbjct: 138 QIAQVACGYWHSHALSKGGQVFSWGQNQFGQLGLGMHGSSIS--TPQIIQSLQGIPFAQL 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H A+ +G + WG N GQLGL D + R P ++++ V
Sbjct: 196 SAGGAHSFAITLSGAVF--------GWGKNKFGQLGLNDTKDRWFPALLKSLRSQR---V 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
V+CG HTA LT + +TFG G GQLGH T + P +V EL V
Sbjct: 245 IFVSCGEDHTAALTKLRG--------VFTFGAGGYGQLGHNCTNHEINPRKVFELMGNV- 295
Query: 183 LVSVDCG 189
+ + CG
Sbjct: 296 VTQISCG 302
>gi|395502621|ref|XP_003755677.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Sarcophilus
harrisii]
Length = 4865
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 118/453 (26%), Positives = 184/453 (40%), Gaps = 89/453 (19%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLP-----DSSTEGGFSLVSSFTPSPVWDFH 55
+ ++ S K +LA G ++ WG+ +SST+ L+
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQG-------PLQ 509
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G VV V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 510 GKVVVCVSAGYRHSAAVSEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDIS 561
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++
Sbjct: 562 N-----VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIE 609
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q +++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 610 AL-QGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEE 661
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
V ++ G +H + ++ D ++++WG G G G + P
Sbjct: 662 LAA-----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------P 705
Query: 296 LTEEFKQDELNTGGLDDEIKTKDLEG--------AEERDEKLSS-------AMEEMKLLQ 340
+T+ K GLD + G A RD ++ + +EE
Sbjct: 706 ITKPKK-----VSGLDGVAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSH 760
Query: 341 SKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRS 394
+ S +ERY ++ I PF P S + F + K N L A S
Sbjct: 761 LR-SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVATS 813
Query: 395 KLVRLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
L R RN+L + D + IQE+V E L
Sbjct: 814 ILGRQAGPLRNLLFRLMDSSVPDEIQEVVIETL 846
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G V++++CG +H +
Sbjct: 4098 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVIQMSCGFKHSAVVT 4154
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4155 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4203
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4204 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4255
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4256 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 4304
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P ++
Sbjct: 4305 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLI 4341
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ VS G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVSEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4245 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 4298
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P +I +
Sbjct: 4299 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLITVLQGKN-- 4348
Query: 121 AVYEVTCGSFHTALLTHRKRP 141
+ +++ G H+A T P
Sbjct: 4349 -IRQISAGRCHSAAWTASPVP 4368
>gi|74144437|dbj|BAE36068.1| unnamed protein product [Mus musculus]
Length = 527
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 115/250 (46%), Gaps = 31/250 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 61 STIEPRRLDSLTGKKIASLSYGSGPHIVLATTDGEVF--------TWGHNAYSQLGNGTT 112
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 113 NHGLVPCHIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 162
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q ++++ CG + V G+V+ WG N L
Sbjct: 163 GSTANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGYNG------NGQLGLG 216
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 217 SSGNQPTPCRVAA--LQGIRVQ---RVACGYAHTLVLTDEG-QIYAWGANSYGQLGTGNK 270
Query: 283 IDFFAPAIVL 292
+ P V+
Sbjct: 271 SNQSYPTPVV 280
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 112/253 (44%), Gaps = 45/253 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 130 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQPIPRRVTGCLQNK 181
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + D E W G NGQLG G++ + P +V L
Sbjct: 182 --VVMNIACGQMCSMAVV------DTGEVYVW--GYNGNGQLGLGSSGNQPTPCRVAAL- 230
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAI-SPILISG 235
Q + + V CG HT V++ G +++WG LG T N++ + +P+++
Sbjct: 231 QGIRVQRVACGYAHTLVLTDEGQIYAWGANSYGQLG-------TGNKSNQSYPTPVVVE- 282
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFF 286
K + AC +AHT G ++ WG RG+S +L T F
Sbjct: 283 ------KDRIIEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVILPHHTHFCCTDDVFACF 336
Query: 287 APAIVLWPPLTEE 299
A V W L+ E
Sbjct: 337 ATPAVTWRLLSVE 349
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M S+A+ + G +++WG + G L SS TP V G V
Sbjct: 183 VMNIACGQMCSMAVVDTGEVYVWG------YNGNGQLGLGSSGNQPTPCRVAALQGIRVQ 236
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 237 RVACGYAHTLVLTDEGQIY--------AWGANSYGQLGTGNKSNQSYP 276
>gi|440796629|gb|ELR17738.1| ubiquitin ligase, putative [Acanthamoeba castellanii str. Neff]
Length = 1287
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 131/329 (39%), Gaps = 68/329 (20%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSST----EGGFSL--------VSSFTP 48
+ S+ AGG S + G L+ +G L + EGG +L S F P
Sbjct: 665 VVSIAAGGYHSALVTADGELYTFGRGGEFQLGHDTVMALGEGGNALHYRSNSAQTSYFQP 724
Query: 49 SP--VWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
P + +G V +VACG H + G Y+WG NGQLG GD +
Sbjct: 725 KPTRLSALNGQVVKQVACGRFHSACVTEEG--------ALYTWGRGANGQLGHGDMTDQA 776
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-- 164
PK +E +D + +V CG H+A + + +T G E+GQLG G
Sbjct: 777 TPKRVEAGIKDK--IMVKVACGENHSAAVDS--------AGVIYTTGGDESGQLGKGDEW 826
Query: 165 --------------TQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+ +P + L ++V V + CG + +++ G +++WG
Sbjct: 827 ICATHGEGCTGSGWSCQERIPTFLSILSVRHVQFVDIACGHGFCAAITNRGLLYTWGKGT 886
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
LGL P+ GD P H V VACG H +TD G +L+ W
Sbjct: 887 ALGLGPS--------GDVSEPT-------HLSSIDGVVSVACGDIHAAALTDKG-QLYMW 930
Query: 270 GRGRSGVLGTGKTIDFFAPAIVLWPPLTE 298
G +G LG G++ + L P +
Sbjct: 931 GSSEAGRLGDGRSTEGVTRTPKLVPAFAD 959
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 125/313 (39%), Gaps = 41/313 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG-----NCPLPDSSTEGGFSLVSSFTPSPVW---DF 54
Q+ V AG SL + G + +G C P + L + P P+ D
Sbjct: 601 QVKMVAAGEFHSLCLTENGEVTSFGLNDQGQCGQPITKIAESSDLAAVARPRPIVLPDDL 660
Query: 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET- 113
TVV +A G H + + GE Y + G + LG G R +T
Sbjct: 661 RKKTVVSIAAGGYHSALVTADGELYTFGRGGEFQLGHDTVMALGEGGNALHYRSNSAQTS 720
Query: 114 FNQDSP--------WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
+ Q P V +V CG FH+A +T E +T+G G NGQLGHG
Sbjct: 721 YFQPKPTRLSALNGQVVKQVACGRFHSACVTE--------EGALYTWGRGANGQLGHGDM 772
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
P++V+ + +V V CG H++ V SAG +++ G ++ L G
Sbjct: 773 TDQATPKRVEAGIKDKIMVKVACGENHSAAVDSAGVIYTTGGDESGQLGKGDEWICATHG 832
Query: 226 DAIS----------PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSG 275
+ + P +S +F V +ACG +T+ G L++WG+G +
Sbjct: 833 EGCTGSGWSCQERIPTFLSILSVRHVQF---VDIACGHGFCAAITNRGL-LYTWGKGTA- 887
Query: 276 VLGTGKTIDFFAP 288
LG G + D P
Sbjct: 888 -LGLGPSGDVSEP 899
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 102/230 (44%), Gaps = 45/230 (19%)
Query: 88 SWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLES 147
SWGAN++G LG +L P IE+ S V V G FH+ LT
Sbjct: 571 SWGANSDGVLGHTGGIEQLWPLAIESL---SSVQVKMVAAGEFHSLCLTENGEVT----- 622
Query: 148 MCWTFGLGENGQLGHGTTQSA--------------LVPEQVKELPQYVYLVSVDCGLFHT 193
+FGL + GQ G T+ A ++P+ +++ +VS+ G +H+
Sbjct: 623 ---SFGLNDQGQCGQPITKIAESSDLAAVARPRPIVLPDDLRKKT----VVSIAAGGYHS 675
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ-DPV----- 247
++V++ G+++++G L + + E G+A+ N FQ P
Sbjct: 676 ALVTADGELYTFGRGGEFQLGHDTVMALGEGGNALH---YRSNSAQTSYFQPKPTRLSAL 732
Query: 248 ------QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
QVACG H+ VT++G L++WGRG +G LG G D P V
Sbjct: 733 NGQVVKQVACGRFHSACVTEEG-ALYTWGRGANGQLGHGDMTDQATPKRV 781
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 100/266 (37%), Gaps = 55/266 (20%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKV 62
+ V G S + GAL+ WG + G + TP V +VKV
Sbjct: 737 VKQVACGRFHSACVTEEGALYTWGRGA---NGQLGHGDMTDQATPKRVEAGIKDKIMVKV 793
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-----------------ESR 105
ACG H A+ SAG V Y+ G + +GQLG GD + R
Sbjct: 794 ACGENHSAAVDSAG--------VIYTTGGDESGQLGKGDEWICATHGEGCTGSGWSCQER 845
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
+ P + + V ++ CG A +T+R + +T+G G LG G +
Sbjct: 846 I-PTFLSILSVRHVQFV-DIACGHGFCAAITNR--------GLLYTWGKGT--ALGLGPS 893
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
P + + +VSV CG H + ++ G ++ WG + L R+ G
Sbjct: 894 GDVSEPTHLSSIDG---VVSVACGDIHAAALTDKGQLYMWGSSEAGRLGDG----RSTEG 946
Query: 226 DAISPILISGNGPHGPKFQDPVQVAC 251
+P L+ P F D Q C
Sbjct: 947 VTRTPKLV-------PAFADIHQARC 965
>gi|432104195|gb|ELK31017.1| RCC1 and BTB domain-containing protein 2 [Myotis davidii]
Length = 526
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 110/236 (46%), Gaps = 35/236 (14%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
K+AC S H+V + GE + +WG N QLG G L P I T
Sbjct: 75 KIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTTNHGLVPCHIST--N 124
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V EV CGS+H+ +LT E W G +GQ+G G+T + +P +V
Sbjct: 125 LSNKHVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGSGSTANQPIPRRVTS 176
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q +V++ CG + V G+V+ WG N L +G+ +P ++
Sbjct: 177 SLQNKVVVNIACGQMCSMAVVDNGEVYVWGYNG------NGQLGLGSSGNQSTPCRLA-- 228
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G + Q +VACG AHT+++TD+G ++++WG G LGTG + P V+
Sbjct: 229 -LQGVRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNKSNQSYPTPVV 279
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 129/294 (43%), Gaps = 54/294 (18%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G LV + + + H V++VACGS H + L S GE
Sbjct: 94 GEVFTWGHNAYSQLGNGTTNHG--LVPCHISTNLSNKH---VIEVACGSYHSLVLTSDGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
+ +WG NN+GQ+G G ++ P+ + + Q+ V + CG + +
Sbjct: 149 VF--------AWGYNNSGQVGSGSTANQPIPRRVTSSLQNK--VVVNIACGQMCSMAVV- 197
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G++ + P ++ Q V + V CG HT V++
Sbjct: 198 -----DNGEVYVW--GYNGNGQLGLGSSGNQSTPCRLA--LQGVRVQRVACGYAHTLVLT 248
Query: 198 SAGDVWSWGMEK--GLGLCPNASLTRNEAGDAI-SPILISGNGPHGPKFQDPVQVACGAA 254
G V++WG LG T N++ + +P+++ K + AC +A
Sbjct: 249 DEGQVYAWGANSYGQLG-------TGNKSNQSYPTPVVVE-------KDRIIEIAACHSA 294
Query: 255 HTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEE 299
HT G ++ WG RG+S VL T FA V W L+ E
Sbjct: 295 HTSAAKTQGGHVYMWGQCRGQSVVLPHLTHLSCTDDVFACFATPTVSWRLLSVE 348
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 18/108 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS---FTPSPVWDFHGHTVV 60
+ ++ G M S+A+ + G +++WG + G L SS TP + G V
Sbjct: 183 VVNIACGQMCSMAVVDNGEVYVWG------YNGNGQLGLGSSGNQSTPCRL-ALQGVRVQ 235
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P
Sbjct: 236 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYP 275
>gi|149033226|gb|EDL88027.1| hect domain and RLD 3 (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 909
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIIHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQTSPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLL 239
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 240 -RTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSVNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ + ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHTCNVKCPSPV 341
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 106/241 (43%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
++ +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SIKEVACGGNHSVFLLEDGEVY--------TCGVNTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IIHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q L V CG +H +++ G ++WG + GLG S R + + I P
Sbjct: 134 LNQQTIL-QVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEKDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSVNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT L P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLALV----PSS---GLIYAFGCGAKGQLGTGHTCNVKCPSPVK 342
>gi|55725019|emb|CAH89377.1| hypothetical protein [Pongo abelii]
Length = 451
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 114/249 (45%), Gaps = 31/249 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + +G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 90 STIEPRRLDSLNGKKIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTT 141
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 142 NHGLVPCHIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 191
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q +V++ CG V G+V+ WG N L
Sbjct: 192 GSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNG------NGQLGLG 245
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 246 NSGNQPTPCRVA--ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNK 299
Query: 283 IDFFAPAIV 291
+ P V
Sbjct: 300 SNQSYPTPV 308
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 106/259 (40%), Gaps = 57/259 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 159 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNK 210
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + D E W G NGQLG G + + P +V L
Sbjct: 211 --VVVTIACGQMCCMAVV------DTGEVYVW--GYNGNGQLGLGNSGNQPTPCRVAAL- 259
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + V CG HT V++ G V++WG N G L +GN
Sbjct: 260 QGIRVQRVACGYAHTLVLTDEGQVYAWGA--------------NSYGQ-----LGTGNKS 300
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTG 280
+ + PV V AC + HT G ++ WG RG+S +L T
Sbjct: 301 N-QSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTD 359
Query: 281 KTIDFFAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 360 DVFACFATPAVTWRLLSVE 378
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ + G +++WG + G L +S TP V G V
Sbjct: 212 VVTIACGQMCCMAVVDTGEVYVWG------YNGNGQLGLGNSGNQPTPCRVAALQGIRVQ 265
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + T +D
Sbjct: 266 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPV-TVEKDRII 316
Query: 121 AVYEVTCGSFHTA 133
+ C S HT+
Sbjct: 317 EI--AACHSTHTS 327
>gi|47212899|emb|CAF90789.1| unnamed protein product [Tetraodon nigroviridis]
Length = 3089
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 126/283 (44%), Gaps = 38/283 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 467 IKKVSSSKGSDGHTLAFTTEGEVFSWGDG---DYGKLGHGNSSTQKYPKLIQGPLQGKVV 523
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y+WG + G+LG GD SR P +++ +
Sbjct: 524 VCVSAGYRHSAAVSEDGE--------LYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 572
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ V+ L Q
Sbjct: 573 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVVEAL-Q 622
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 623 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELA-- 673
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
V ++ G +H + ++ D ++++WG G G G +
Sbjct: 674 ---TTRVVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNS 712
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 23/203 (11%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF-HTALLTHRKRPNDMLESM 148
G + G+LGLGD ++ K + TF + GS HT T E
Sbjct: 438 GKGSYGRLGLGDSNNQSTLKKL-TFEPHRAIKKVSSSKGSDGHTLAFT--------TEGE 488
Query: 149 CWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ VS G++++WG
Sbjct: 489 VFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVSEDGELYTWGEG 548
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
L S +RN P L+ G +V+CG++HT+ ++ DG +WS
Sbjct: 549 DFGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWS 595
Query: 269 WGRGRSGVLGTGKTIDFFAPAIV 291
+G G +G LG G T + P +V
Sbjct: 596 FGGGDNGKLGHGDTNRVYKPKVV 618
>gi|148666329|gb|EDK98745.1| hect domain and RLD 3, isoform CRA_a [Mus musculus]
Length = 913
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIIHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQTSPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSVNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ + ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHTCNVKCPSPV 341
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 106/241 (43%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
++ +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SIKEVACGGNHSVFLLEDGEVY--------TCGVNTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IIHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q L V CG +H +++ G ++WG + GLG S R + + I P
Sbjct: 134 LNQQTIL-QVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEKDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSVNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT L P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLALV----PSS---GLIYAFGCGAKGQLGTGHTCNVKCPSPVK 342
>gi|291401438|ref|XP_002717008.1| PREDICTED: hect domain and RLD 3 [Oryctolagus cuniculus]
Length = 1504
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 139/297 (46%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 539 HIVHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 592
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG S+ P+ + + +
Sbjct: 593 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQTSPQRVRSL-EG 643
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 644 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLL 693
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 694 -RTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 746
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 747 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 795
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 106/241 (43%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 489 SVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLG-HEREGNKPEQIGALADQH 539
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 540 ----IVHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 587
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q L V CG +H +++ G ++WG + GLG S R + + I P
Sbjct: 588 LNQQTIL-QVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGI-P 645
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 646 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEKDRESPCH 689
Query: 291 V 291
V
Sbjct: 690 V 690
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 646 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 702
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 703 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 750
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 751 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 796
>gi|188035869|ref|NP_082981.3| hect domain and RLD 3 [Mus musculus]
gi|148666330|gb|EDK98746.1| hect domain and RLD 3, isoform CRA_b [Mus musculus]
gi|148666331|gb|EDK98747.1| hect domain and RLD 3, isoform CRA_b [Mus musculus]
gi|148666332|gb|EDK98748.1| hect domain and RLD 3, isoform CRA_b [Mus musculus]
gi|148877724|gb|AAI45981.1| Hect domain and RLD 3 [Mus musculus]
gi|148877951|gb|AAI45979.1| Hect domain and RLD 3 [Mus musculus]
Length = 1050
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIIHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQTSPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSVNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ + ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHTCNVKCPSPV 341
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 107/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
++ +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SIKEVACGGNHSVFLLEDGEVY--------TCGVNTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IIHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG S R + + I P
Sbjct: 134 LNQQT-ILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEKDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSVNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT L P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLALV----PSS---GLIYAFGCGAKGQLGTGHTCNVKCPSPVK 342
>gi|27503689|gb|AAH42574.1| Hect domain and RLD 3 [Mus musculus]
Length = 1050
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIIHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQTSPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSVNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ + ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHTCNVKCPSPV 341
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 107/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
++ +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SIKEVACGGNHSVFLLEDGEVY--------TCGVNTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IIHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG S R + + I P
Sbjct: 134 LNQQT-ILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEKDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSVNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT L P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLALV----PSS---GLIYAFGCGAKGQLGTGHTCNVKCPSPVK 342
>gi|320162832|gb|EFW39731.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 591
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 127/281 (45%), Gaps = 39/281 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ + G ++WG EG +P+ + G VV ACG+ + ++
Sbjct: 256 SVAVADNGEAYVWGRGIDGSLGVEGD----KHVSPTQIHALDGKRVVHAACGAAFTLFVI 311
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+GE Y + G N +GQLG+G E+ P ++ P + + CG+ H
Sbjct: 312 ESGEVY--------ACGNNEHGQLGIGSNEAMSEPTLVTNL----PERIVRIACGNSHAV 359
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGT-TQSALVPEQVKELPQYVYLVSVDCGLFH 192
L+ R + +G +GQLG G + L P +V+ + CG H
Sbjct: 360 ALSETGR--------LYAWGAHSSGQLGVGEPLEDRLSPVRVESNVVRDDVADFACGGNH 411
Query: 193 TSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
T ++S++G ++++G + LGL P A T+N+A A P P G K+ ++
Sbjct: 412 TIILSNSGLLYAFGSGAQGQLGLGPLA--TKNQATPAALP------NPEGRKY---TAIS 460
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
CG + V+D G K+++WG G S LG +AP ++
Sbjct: 461 CGQDISAAVSDRG-KIYTWGSGASNALGLPDGRTKYAPTLI 500
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 98/236 (41%), Gaps = 34/236 (14%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL-GDRES 104
FTP + G + +AC H VA+ GE Y WG +G LG+ GD+
Sbjct: 233 FTPLRLAGLRGFDITHIACNENHSVAVADNGEA--------YVWGRGIDGSLGVEGDKH- 283
Query: 105 RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
+ P I + V CG+ T + + G E+GQLG G+
Sbjct: 284 -VSPTQIHALDGKR---VVHAACGAAFTLFVIE--------SGEVYACGNNEHGQLGIGS 331
Query: 165 TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA 224
++ P V LP+ + V + CG H +S G +++WG L L
Sbjct: 332 NEAMSEPTLVTNLPERI--VRIACGNSHAVALSETGRLYAWGAHSSGQLGVGEPLE---- 385
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
D +SP+ + N D ACG HT+++++ G L+++G G G LG G
Sbjct: 386 -DRLSPVRVESNVVR----DDVADFACGGNHTIILSNSGL-LYAFGSGAQGQLGLG 435
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 89/212 (41%), Gaps = 31/212 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIET-FNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y+WG G LG G+ + P+++E D + + GS HT L +
Sbjct: 162 YTWGEGTRGMLGHGEEDPEASPRVVEALLGHD----IKMLCLGSGHTMALA--------V 209
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD--VW 203
+++GLG G+LG G + P ++ L + + + C H+ V+ G+ VW
Sbjct: 210 SGEVYSWGLGLGGRLGQGRERDRFTPLRLAGLRGF-DITHIACNENHSVAVADNGEAYVW 268
Query: 204 SWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
G++ LG+ E +SP I H + V ACGAA T+ V + G
Sbjct: 269 GRGIDGSLGV---------EGDKHVSPTQI-----HALDGKRVVHAACGAAFTLFVIESG 314
Query: 264 YKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
++++ G G LG G P +V P
Sbjct: 315 -EVYACGNNEHGQLGIGSNEAMSEPTLVTNLP 345
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL-----VSSFTPSPVWDFHGHT 58
+ GG ++ + N+G L+ +G S +G L + TP+ + + G
Sbjct: 402 VADFACGGNHTIILSNSGLLYAFG------SGAQGQLGLGPLATKNQATPAALPNPEGRK 455
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
++CG + +SA + +G+ Y+WG+ + LGL D ++ P +IE+
Sbjct: 456 YTAISCGQD-----ISAAVSDRGK---IYTWGSGASNALGLPDGRTKYAPTLIESMADKR 507
Query: 119 PWAVYEVTCGSFH-TALLTHRKRPND 143
V CG FH A + H P+D
Sbjct: 508 ---CRTVACGFFHMAATIIHGWVPDD 530
>gi|379721973|ref|YP_005314104.1| hypothetical protein PM3016_4177 [Paenibacillus mucilaginosus 3016]
gi|378570645|gb|AFC30955.1| hypothetical protein PM3016_4177 [Paenibacillus mucilaginosus 3016]
Length = 337
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 128/294 (43%), Gaps = 48/294 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ + + AGG S A+ + G W WG+ L D +T TP V H
Sbjct: 28 LDSVIGISAGGAASFAVRSDGTAWAWGSNLFGQLGDGTT------YDRLTPVQVQGL--H 79
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+VV + GS H +A+ + G ++WG N GQLG G +SR P ++ +
Sbjct: 80 SVVALEAGSSHSLAVKADGS--------VWAWGWNTYGQLGDGTTDSRSTPVQVQALD-- 129
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+V V GS H+ + + W +G +GQLG GT + VP QV L
Sbjct: 130 ---SVVAVAAGSGHSLAV--------KADGSVWAWGANWSGQLGDGTYTESTVPVQVTGL 178
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+VSV G +S + S G VW+WG L + A ++ SP+ ++G
Sbjct: 179 GS---VVSVSAGNTFSSALKSDGTVWAWGANDSGQLG-----SETAASNSPSPVQVTG-- 228
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ G+ +++ + +DG +W+WG SG LG G T AP V
Sbjct: 229 -----MASAAAISSGSDYSLALKNDG-TVWAWGYNSSGQLGNGTTTSSSAPVQV 276
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 101/234 (43%), Gaps = 40/234 (17%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
++P PV + +V+ ++ G A+ S D ++WG+N GQLG G R
Sbjct: 20 YSPIPVKNLD--SVIGISAGGAASFAVRS--------DGTAWAWGSNLFGQLGDGTTYDR 69
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
L P ++ + +V + GS H+ + + W +G GQLG GTT
Sbjct: 70 LTPVQVQGLH-----SVVALEAGSSHSLAV--------KADGSVWAWGWNTYGQLGDGTT 116
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
S P QV+ L +V+V G H+ V + G VW+WG + L
Sbjct: 117 DSRSTPVQVQALDS---VVAVAAGSGHSLAVKADGSVWAWGANW------SGQLGDGTYT 167
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
++ P+ ++G G V V+ G + + DG +W+WG SG LG+
Sbjct: 168 ESTVPVQVTGLG-------SVVSVSAGNTFSSALKSDG-TVWAWGANDSGQLGS 213
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 84/206 (40%), Gaps = 28/206 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + +V AG SLA+ G++W WG S G + S P V +VV
Sbjct: 128 LDSVVAVAAGSGHSLAVKADGSVWAWGANW---SGQLGDGTYTESTVPVQVTGLG--SVV 182
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V+ G+ AL S D ++WGAN++GQLG ET +SP
Sbjct: 183 SVSAGNTFSSALKS--------DGTVWAWGANDSGQLG------------SETAASNSPS 222
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V S + W +G +GQLG+GTT S+ P QV L
Sbjct: 223 PVQVTGMASAAAISSGSDYSLALKNDGTVWAWGYNSSGQLGNGTTTSSSAPVQVTRLGS- 281
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWG 206
+VSV G H V S G VW WG
Sbjct: 282 --VVSVAAGPLHGLAVQSGGTVWDWG 305
>gi|282722854|gb|ADA84473.1| retinitis pigmentosa GTPase regulator protein 2 1-17 isoform [Danio
rerio]
Length = 708
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 134/301 (44%), Gaps = 51/301 (16%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHTVVKVA 63
+ G + + G L+M+G S+ G L + T P+ V V A
Sbjct: 41 ISCGDEHTALVTENGKLFMFG------SNNWGQLGLGTKTTVNKPTCVKALRSERVKLTA 94
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H + S G Y+ G NN GQLGLGD R ++E FN+ P +
Sbjct: 95 CGRTHTLVFTSRGN--------LYACGGNNEGQLGLGDCNDRTSFHLVEFFNKQGPIKM- 145
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
+ GS +A LT R + G GQ+G G +AL P++V + + V+
Sbjct: 146 -LAAGSNTSAALTQDGR--------LYMRGDNSEGQIGLGKESNALTPQEVS-VGKRVFW 195
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
VS CG +H++ V+ G ++++G + LGL L ++ ++ I
Sbjct: 196 VS--CGYYHSAFVTVDGALYTFGEKDSGKLGLS-TEKLANHKVPQQVTDIP--------- 243
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFK 301
VQVACG HTV +T++ +++S+G G+ G LG G I F + P + E F+
Sbjct: 244 --DRVVQVACGGGHTVALTEN--EVYSFGLGQFGQLGHGTFI--FESRL---PRVVEHFR 294
Query: 302 Q 302
+
Sbjct: 295 K 295
>gi|327268361|ref|XP_003218966.1| PREDICTED: x-linked retinitis pigmentosa GTPase regulator-like
[Anolis carolinensis]
Length = 788
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 126/273 (46%), Gaps = 56/273 (20%)
Query: 27 GNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVC 86
G L D+ F L+S FT H + ++A GS L G+ LV
Sbjct: 117 GQLGLGDTEERSTFHLISFFTKQ-------HKIKQLAAGSYTSAVLTEDGQ------LVM 163
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG N+ GQ+GLGD+ P + D V ++CG +H+AL+T +
Sbjct: 164 --WGDNSEGQIGLGDKAYVSVPHQV-----DIGKPVSCISCGYYHSALITQ--------D 208
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVK--ELPQYVYLVS-----VDCGLFHTSVVSSA 199
+TFG ENG+LG L P+Q+K +LPQ V +S V CG HT VV +
Sbjct: 209 GELYTFGEPENGKLG-------LSPKQLKNHKLPQLVSGISGKVSKVACGGGHT-VVLAE 260
Query: 200 GDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLV 259
GDV+++G+ + G + + + P + G H +ACG HT L+
Sbjct: 261 GDVYTFGLGQ-YGQLGHGTFVF----ETSEPKTVDHLGKH-----KICHIACGENHTALI 310
Query: 260 TDDGYKLWSWGRGRSGVLGTGKT--IDFFAPAI 290
T++G ++++G GR G LG G+ + F P +
Sbjct: 311 TENGL-MYTFGDGRHGKLGLGEENYTNQFVPTL 342
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 32/208 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFTPSPVWDFHGHTVVK 61
+I + AG S + G L MWG+ ++EG L ++ P G V
Sbjct: 141 KIKQLAAGSYTSAVLTEDGQLVMWGD------NSEGQIGLGDKAYVSVPHQVDIGKPVSC 194
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR--PKIIETFNQDSP 119
++CG H + GE Y++G NG+LGL ++ + P+++ +
Sbjct: 195 ISCGYYHSALITQDGE--------LYTFGEPENGKLGLSPKQLKNHKLPQLVSGIS---- 242
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-TQSALVPEQVKELP 178
V +V CG HT +L E +TFGLG+ GQLGHGT P+ V L
Sbjct: 243 GKVSKVACGGGHTVVLA---------EGDVYTFGLGQYGQLGHGTFVFETSEPKTVDHLG 293
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
++ + + CG HT++++ G ++++G
Sbjct: 294 KH-KICHIACGENHTALITENGLMYTFG 320
>gi|12856817|dbj|BAB30794.1| unnamed protein product [Mus musculus]
Length = 913
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIIHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQTSPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLL 239
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 240 -RTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSVNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ + ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHTCNVKCPSPV 341
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 106/241 (43%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
++ +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SIKEVACGGNHSVFLLEDGEVY--------TCGVNTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IIHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q L V CG +H +++ G ++WG + GLG S R + + I P
Sbjct: 134 LNQQTIL-QVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEKDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSVNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT L P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLALV----PSS---GLIYAFGCGAKGQLGTGHTCNVKCPSPVK 342
>gi|196012989|ref|XP_002116356.1| hypothetical protein TRIADDRAFT_60369 [Trichoplax adhaerens]
gi|190580947|gb|EDV21026.1| hypothetical protein TRIADDRAFT_60369 [Trichoplax adhaerens]
Length = 4253
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 124/284 (43%), Gaps = 42/284 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTV 59
+ + S K +LAI + G ++ WG+ D G + V+ +P + G V
Sbjct: 468 IKNLVSSKGSDGHTLAIASDGRIYSWGD---GDYGKLGHGNHVTQKSPKLILGPMQGKVV 524
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++A G H A+ S G + Y+WG + G+LG GD SR P +++
Sbjct: 525 RQIAVGYRHSAAITSEG--------LLYTWGDGDYGRLGHGDNHSRSIPTLVKDIT---- 572
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V V+CGS T +++ + W+FG G+NG+LGHG T P+ + L Q
Sbjct: 573 -GVGSVSCGSSFTVVISQDA-------TTVWSFGAGDNGKLGHGDTSRVYRPKVISNL-Q 623
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ + V C + ++S G V+ WG LG G A + L+
Sbjct: 624 GLLIRKVCCASQSSLALTSIGQVFVWGSGPCLGY-----------GQADATFLVP---KR 669
Query: 240 GPKFQD--PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+FQD + +A G H + +T D ++SWG SG G G
Sbjct: 670 LDEFQDLQIIDIAVGDNHCLALTCDN-DVYSWGNNASGQCGLGN 712
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 99/219 (45%), Gaps = 35/219 (15%)
Query: 79 YKGEDLVCYSWGANNNGQLGLGDRES--RLRPKIIETFNQDSPWAVYEVTCGSFHTALLT 136
+ G L C G + G+LG G+ + RLRP + + VT + T L
Sbjct: 3454 HDGTVLAC---GEGSYGRLGQGNSDDLPRLRPI--------TALQGFVVTELATSTGLEG 3502
Query: 137 HRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
H + E W G G+ G+LGHG ++ P Q++ L + ++ V CG H+++V
Sbjct: 3503 HSLALTETGEVFSW--GDGDYGKLGHGNSERQRRPRQIEAL-RGEDVLHVACGHKHSAIV 3559
Query: 197 SSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACG 252
+ G ++++G GLG N L A+ PI++ +ACG
Sbjct: 3560 TVDGKLFTFGASDLGRLGLGNTSNKKLPAQVT--ALQPIMVE-------------LIACG 3604
Query: 253 AAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
A HTV+VT D +W++G G G LG G+T P V
Sbjct: 3605 ANHTVVVTTDRESVWTFGEGEYGQLGLGRTTAKMTPQYV 3643
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 114/295 (38%), Gaps = 84/295 (28%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
SLA+ G ++ WG+ D G + P + G V+ VACG +H
Sbjct: 3504 SLALTETGEVFSWGD---GDYGKLGHGNSERQRRPRQIEALRGEDVLHVACGHKH----- 3555
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
SA T G+ +++GA++ G+LGLG+ ++ P + P V + CG+ HT
Sbjct: 3556 SAIVTVDGK---LFTFGASDLGRLGLGNTSNKKLPAQVTALQ---PIMVELIACGANHTV 3609
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL---------------- 177
++T + ES+ WTFG GE GQLG G T + + P+ V
Sbjct: 3610 VVTTDR------ESV-WTFGEGEYGQLGLGRTTAKMTPQYVDAFSKLNIKKICCGARFTL 3662
Query: 178 ------------------------------PQYVYLVS------VDCGLFHTSVVSSAGD 201
PQ V +S + G H ++ GD
Sbjct: 3663 ALTKEGKVYSCGHNRCNGIFEVDTQHADYYPQQVMALSEQFIEDIAAGYEHALALTKEGD 3722
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHT 256
VWSWG + L +L + E P LIS G + Q++ G H+
Sbjct: 3723 VWSWGNDTDGQLGLGQTLPQRE------PCLISSLQGKGIR-----QISAGHNHS 3766
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 35/206 (16%)
Query: 93 NNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF-HTALLTHRKRPNDMLESMCWT 151
N G+LGLGD ++ RPK+I F + + GS HT + R ++
Sbjct: 442 NYGRLGLGDSSNQNRPKLIR-FEHECKIKNLVSSKGSDGHTLAIASDGR--------IYS 492
Query: 152 FGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
+G G+ G+LGHG + P+ + Q + + G H++ ++S G +++WG
Sbjct: 493 WGDGDYGKLGHGNHVTQKSPKLILGPMQGKVVRQIAVGYRHSAAITSEGLLYTWG----- 547
Query: 212 GLCPNASLTRNEAGDAIS---PIL---ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
+ R GD S P L I+G G V+CG++ TV+++ D
Sbjct: 548 ----DGDYGRLGHGDNHSRSIPTLVKDITGVG----------SVSCGSSFTVVISQDATT 593
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIV 291
+WS+G G +G LG G T + P ++
Sbjct: 594 VWSFGAGDNGKLGHGDTSRVYRPKVI 619
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 20/140 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I V SLA+ + G +++WG+ P LV P + +F ++ +A
Sbjct: 627 IRKVCCASQSSLALTSIGQVFVWGSGPCLGYGQADATFLV----PKRLDEFQDLQIIDIA 682
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES-RLRPKIIETFNQDSPWAV 122
G H +AL + Y SWG N +GQ GLG+ S L P+ + F+ +
Sbjct: 683 VGDNHCLALTCDNDVY--------SWGNNASGQCGLGNNNSPVLLPRKVTGFDNH---VI 731
Query: 123 YEVTCGSFH----TALLTHR 138
Y+++ G+ H TAL T R
Sbjct: 732 YQISVGTSHSIAWTALPTDR 751
>gi|426379401|ref|XP_004056386.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Gorilla
gorilla gorilla]
Length = 4502
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 128/287 (44%), Gaps = 46/287 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLP-----DSSTEGGFSLVSSFTPSPVWDFH 55
+ ++ S K +LA G ++ WG+ +SST+ L+
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQG-------PLQ 509
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G VV V+ G H A+ GE Y+WG + G+LG GD SR P +++ +
Sbjct: 510 GKVVVCVSAGYRHSAAVTEDGE--------LYTWGEGDFGRLGHGDSNSRNIPTLVKDIS 561
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++
Sbjct: 562 N-----VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIE 609
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q +++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 610 AL-QGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEE 661
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
V V+ G +H + ++ D ++++WG G G G +
Sbjct: 662 LAA-----TRIVDVSIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNS 702
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 3735 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 3791
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ +++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 3792 SDGK--------LFTFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 3840
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P+++ L + + V CG +
Sbjct: 3841 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCG-IGIKKVACGTQFS 3892
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 3893 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVIIED---VAVGA 3941
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + +G +++WG G LG G T P +V
Sbjct: 3942 EHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTVV 3978
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 3882 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVIIE 3935
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 3936 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTVVTGLQGKN-- 3985
Query: 121 AVYEVTCGSFHTA 133
V +++ G H+A
Sbjct: 3986 -VRQISAGRCHSA 3997
>gi|328865201|gb|EGG13587.1| hypothetical protein DFA_11348 [Dictyostelium fasciculatum]
Length = 628
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 133/298 (44%), Gaps = 45/298 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
SV G S+A+ N G L+ WG C + G S S +P V G + +A G
Sbjct: 188 SVSCGAQHSMALSNYGELYSWG-CGTGGRTGHG--SEAPSLSPQVVSALVGKQITSMAGG 244
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H SA +G Y+WG N GQLG + L P + + V +V
Sbjct: 245 MLH-----SAATDLRGS---VYTWGWNKYGQLGNNTAKKHLSPNKLRDMEKHH---VVKV 293
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
TCG HT LLT E ++FG GQLG G + P++V +LP++ V
Sbjct: 294 TCGKNHTHLLT--------AEGHIYSFGFNVCGQLGVGGYADSQQPKKV-DLPEHA--VD 342
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEK----GLG----------LCPNASLTRN--EAGDAIS 229
+ G +HT +++ G+V+SWG GLG L P + + N ++ D+ +
Sbjct: 343 IVSGYYHTLCLTNKGNVYSWGYMSDGALGLGDIAGHQSKPKLIPLSHIRHNYSDSMDSYN 402
Query: 230 PILISGNGPHGPKFQD---PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
I SG P++ ++A GA ++ ++T G KL+ +G G S +G G +
Sbjct: 403 SIYESGGEGTNPRYAKGDVAEKIAAGAWNSAIITTSG-KLYCFGFGDSYRIGNGTNTE 459
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 106/236 (44%), Gaps = 31/236 (13%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+ +A G HV+A+V G Y+WG N GQLG GD+ +R P I +
Sbjct: 133 VLAMASGDSHVLAIVHPGNQ-------VYAWGCNRWGQLGTGDQTNRATPTPIAIA---T 182
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P V+CG+ H+ L++ +++G G G+ GHG+ +L P+ V L
Sbjct: 183 PTVFTSVSCGAQHSMALSNYGE--------LYSWGCGTGGRTGHGSEAPSLSPQVVSALV 234
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ S+ G+ H++ G V++WG K L N A +SP +
Sbjct: 235 G-KQITSMAGGMLHSAATDLRGSVYTWGWNK------YGQLGNNTAKKHLSPNKLRDMEK 287
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
H V+V CG HT L+T +G+ ++S+G G LG G D P V P
Sbjct: 288 H-----HVVKVTCGKNHTHLLTAEGH-IYSFGFNVCGQLGVGGYADSQQPKKVDLP 337
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 106/234 (45%), Gaps = 34/234 (14%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
TP+P+ V+CG++H +AL + GE YSWG G+ G G L
Sbjct: 174 TPTPIAIATPTVFTSVSCGAQHSMALSNYGE--------LYSWGCGTGGRTGHGSEAPSL 225
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P+++ + + G H+A L +T+G + GQLG+ T +
Sbjct: 226 SPQVVSALVGKQ---ITSMAGGMLHSAATD--------LRGSVYTWGWNKYGQLGNNTAK 274
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD 226
L P +++++ ++ ++V V CG HT ++++ G ++S+G +C L D
Sbjct: 275 KHLSPNKLRDMEKH-HVVKVTCGKNHTHLLTAEGHIYSFGFN----VC--GQLGVGGYAD 327
Query: 227 AISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ P + + P + V + G HT+ +T+ G ++SWG G LG G
Sbjct: 328 SQQPKKV--DLP-----EHAVDIVSGYYHTLCLTNKG-NVYSWGYMSDGALGLG 373
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 24/161 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI S+ G + S A D G+++ WG G + +P+ + D H VVKV
Sbjct: 237 QITSMAGGMLHSAATDLRGSVYTWG---WNKYGQLGNNTAKKHLSPNKLRDMEKHHVVKV 293
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
CG H L + G YS+G N GQLG+G +PK + D P
Sbjct: 294 TCGKNHTHLLTAEGH--------IYSFGFNVCGQLGVGGYADSQQPKKV-----DLPEHA 340
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
++ G +HT LT++ +++G +G LG G
Sbjct: 341 VDIVSGYYHTLCLTNKGN--------VYSWGYMSDGALGLG 373
>gi|337749002|ref|YP_004643164.1| hypothetical protein KNP414_04764 [Paenibacillus mucilaginosus
KNP414]
gi|336300191|gb|AEI43294.1| hypothetical protein KNP414_04764 [Paenibacillus mucilaginosus
KNP414]
Length = 388
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 128/294 (43%), Gaps = 48/294 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ + + AGG S A+ + G W WG+ L D +T TP V H
Sbjct: 79 LDSVIGISAGGAASFAVRSDGTAWAWGSNLFGQLGDGTT------YDRLTPVQVQGL--H 130
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+VV + GS H +A+ + G ++WG N GQLG G +SR P ++ +
Sbjct: 131 SVVALEAGSSHSLAVKADGS--------VWAWGWNTYGQLGDGTTDSRSTPVQVQALD-- 180
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+V V GS H+ + + W +G +GQLG GT + VP QV L
Sbjct: 181 ---SVVAVAAGSGHSLAV--------KADGSVWAWGANWSGQLGDGTYTESTVPVQVTGL 229
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+VSV G +S + S G VW+WG L + A ++ SP+ ++G
Sbjct: 230 GS---VVSVSAGNTFSSALKSDGTVWAWGANDSGQLG-----SETAASNSPSPVQVTG-- 279
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ G+ +++ + +DG +W+WG SG LG G T AP V
Sbjct: 280 -----MASAAAISSGSDYSLALKNDG-TVWAWGYNSSGQLGNGTTTSSSAPVQV 327
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 116/275 (42%), Gaps = 50/275 (18%)
Query: 9 AGGM-MSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
AGG SL + G +W WG N L D + ++P PV + +V+ ++
Sbjct: 36 AGGTGHSLFLQKDGTVWAWGANSNAQLGDGTK------TDRYSPIPVKNLD--SVIGISA 87
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G A+ S D ++WG+N GQLG G RL P ++ + +V
Sbjct: 88 GGAASFAVRS--------DGTAWAWGSNLFGQLGDGTTYDRLTPVQVQGLH-----SVVA 134
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
+ GS H+ + + W +G GQLG GTT S P QV+ L +V
Sbjct: 135 LEAGSSHSLAV--------KADGSVWAWGWNTYGQLGDGTTDSRSTPVQVQALDS---VV 183
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
+V G H+ V + G VW+WG + L ++ P+ ++G G
Sbjct: 184 AVAAGSGHSLAVKADGSVWAWGANW------SGQLGDGTYTESTVPVQVTGLG------- 230
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
V V+ G + + DG +W+WG SG LG+
Sbjct: 231 SVVSVSAGNTFSSALKSDG-TVWAWGANDSGQLGS 264
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 84/206 (40%), Gaps = 28/206 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + +V AG SLA+ G++W WG S G + S P V +VV
Sbjct: 179 LDSVVAVAAGSGHSLAVKADGSVWAWGANW---SGQLGDGTYTESTVPVQVTGLG--SVV 233
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V+ G+ AL S D ++WGAN++GQLG ET +SP
Sbjct: 234 SVSAGNTFSSALKS--------DGTVWAWGANDSGQLG------------SETAASNSPS 273
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V S + W +G +GQLG+GTT S+ P QV L
Sbjct: 274 PVQVTGMASAAAISSGSDYSLALKNDGTVWAWGYNSSGQLGNGTTTSSSAPVQVTRLGS- 332
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWG 206
+VSV G H V S G VW WG
Sbjct: 333 --VVSVAAGPLHGLAVQSGGTVWDWG 356
>gi|242066354|ref|XP_002454466.1| hypothetical protein SORBIDRAFT_04g031600 [Sorghum bicolor]
gi|241934297|gb|EES07442.1| hypothetical protein SORBIDRAFT_04g031600 [Sorghum bicolor]
Length = 1003
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 138/301 (45%), Gaps = 52/301 (17%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL---VSSFTPSPVWDFH------- 55
++ G + A+ +G L+ WG EG SL + SP W H
Sbjct: 288 TIAFGAKYTCAVSVSGELYEWG---------EGIHSLGFGKNQCQRSP-WFPHKLISTSD 337
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G +V+K+ACG H + S G+ Y ++G G LG GD S + PK +E+
Sbjct: 338 GISVLKIACGQWHTAIISSLGKLY--------TYGYGTFGVLGHGDTHSVVHPKEVESLR 389
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC-----WTFGLGENGQLGHGTTQSALV 170
V CG +HTA + + L+S +T+G G+LGH +S LV
Sbjct: 390 GSR---AKSVACGPWHTAAIVE---TSGTLKSSAPGGKLFTWGDAGGGKLGHTNKKSKLV 443
Query: 171 PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP 230
P +V+ L + V CG+ T+V++ G V++ G ++ L N D S
Sbjct: 444 PTRVESLIDCDF-TQVSCGMSLTAVLTITGVVFTIGSKEHGQL-------GNSRSDNTSI 495
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
++ GP +F ++CG++H ++T +G K+++WG+G G LG G +D +P +
Sbjct: 496 CMV--EGPLKTEFVK--DISCGSSHVAVLTMNG-KVFTWGKGTEGQLGLGDYVDRSSPTL 550
Query: 291 V 291
V
Sbjct: 551 V 551
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 46/186 (24%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
W LG GH + +P +K Q + + S+ CG H ++V+ G V+SWG E
Sbjct: 202 WGDVLGRMSDHGHVPATNISLPRLLKS-SQILNVQSIACGEKHAAIVTKQGQVFSWGEEN 260
Query: 210 G--LGLCPNASLTRNEAGDAISPILIS---------------------GNGPHGPKF--- 243
G LG + S++ + D+++ + G G H F
Sbjct: 261 GGRLGHKTSDSVSDPKIIDSLASTPVKTIAFGAKYTCAVSVSGELYEWGEGIHSLGFGKN 320
Query: 244 ---QDP---------------VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ P +++ACG HT +++ G KL+++G G GVLG G T
Sbjct: 321 QCQRSPWFPHKLISTSDGISVLKIACGQWHTAIISSLG-KLYTYGYGTFGVLGHGDTHSV 379
Query: 286 FAPAIV 291
P V
Sbjct: 380 VHPKEV 385
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V ++CGS HV L G+ + +WG GQLGLGD R P ++E
Sbjct: 507 VKDISCGSSHVAVLTMNGKVF--------TWGKGTEGQLGLGDYVDRSSPTLVEALEDKQ 558
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG 155
V + C S TA+ + + +S+C + L
Sbjct: 559 ---VDSIACSSNFTAVTCVHREISSKDQSVCSSCRLA 592
>gi|329928889|ref|ZP_08282703.1| regulator of chromosome condensation (RCC1) repeat protein
[Paenibacillus sp. HGF5]
gi|328937260|gb|EGG33685.1| regulator of chromosome condensation (RCC1) repeat protein
[Paenibacillus sp. HGF5]
Length = 719
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 102/232 (43%), Gaps = 39/232 (16%)
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
K+ G H +LVS+GE YSWG + GQLG G +R P + + N
Sbjct: 37 KLVAGYYHTASLVSSGE--------VYSWGYGDRGQLGDGTWNTRTTPVMAKNLNH---- 84
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++ G + L + WT+G ENGQLG GT + P QV P
Sbjct: 85 -VIDIHSGVRSSMALRQ--------DGTVWTWGANENGQLGIGTITNVNAPAQV---PGL 132
Query: 181 VYLVSVDCGL-FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ ++ GL +H +S G VW+WG G N + T+ SP+L++G
Sbjct: 133 SGIKAISGGLAYHGMALSENGTVWTWGKNDN-GELGNGTTTQQN-----SPVLVAG---- 182
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D +A G +++ + DG +W+WG SG LG G T + P V
Sbjct: 183 ---LSDVTAIAAGGYYSLALKSDG-TVWAWGVNGSGELGDGTTTERHVPVQV 230
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 119/286 (41%), Gaps = 54/286 (18%)
Query: 1 MSQICSVKAG-GMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHG 56
+S I ++ G +A+ G +W WG N L + +T + SPV
Sbjct: 132 LSGIKAISGGLAYHGMALSENGTVWTWGKNDNGELGNGTT--------TQQNSPVLVAGL 183
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
V +A G + +AL S D ++WG N +G+LG G R P +
Sbjct: 184 SDVTAIAAGGYYSLALKS--------DGTVWAWGVNGSGELGDGTTTERHVPVQVAGLTD 235
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V + G H+ + + W +G G LG GT P QV+
Sbjct: 236 -----VMAIAAGGSHSLAIRQ--------DGTVWAWGNNTYGTLGDGTRTHRTRPVQVRN 282
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILIS 234
L ++V+V G +H+ V AG+VWSWG ++ LGL NAS ++ P+ ++
Sbjct: 283 LQ---HIVAVAGGGYHSLAVDQAGNVWSWGDNSQQQLGLSSNAS--------SLIPVPVT 331
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
G + +++ G H+V + DG +W WG G LG G
Sbjct: 332 G-------IEHVREISAGGFHSVAMKKDG-TVWGWGYNSGGQLGDG 369
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 68/164 (41%), Gaps = 26/164 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ AGG SLAI G +W WGN T G + P V + +V
Sbjct: 233 LTDVMAIAAGGSHSLAIRQDGTVWAWGNNTY---GTLGDGTRTHRTRPVQVRNL--QHIV 287
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H +A+ AG +SWG N+ QLGL S L P +
Sbjct: 288 AVAGGGYHSLAVDQAGN--------VWSWGDNSQQQLGLSSNASSLIPVPVTGIEH---- 335
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
V E++ G FH+ + + W +G GQLG GT
Sbjct: 336 -VREISAGGFHSVAMKK--------DGTVWGWGYNSGGQLGDGT 370
>gi|157820833|ref|NP_001102101.1| probable E3 ubiquitin-protein ligase HERC3 [Rattus norvegicus]
gi|149033223|gb|EDL88024.1| hect domain and RLD 3 (predicted), isoform CRA_a [Rattus
norvegicus]
gi|149033224|gb|EDL88025.1| hect domain and RLD 3 (predicted), isoform CRA_a [Rattus
norvegicus]
gi|149033225|gb|EDL88026.1| hect domain and RLD 3 (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 1050
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIIHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQTSPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSVNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ + ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHTCNVKCPSPV 341
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 107/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
++ +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SIKEVACGGNHSVFLLEDGEVY--------TCGVNTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IIHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG S R + + I P
Sbjct: 134 LNQQT-ILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEKDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSVNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT L P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLALV----PSS---GLIYAFGCGAKGQLGTGHTCNVKCPSPVK 342
>gi|282722852|gb|ADA84472.1| retinitis pigmentosa GTPase regulator protein 2 ORF15 [Danio rerio]
Length = 1413
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 134/301 (44%), Gaps = 51/301 (16%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHTVVKVA 63
+ G + + G L+M+G S+ G L + T P+ V V A
Sbjct: 41 ISCGDEHTALVTENGKLFMFG------SNNWGQLGLGTKTTVNKPTCVKALRSERVKLTA 94
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H + S G Y+ G NN GQLGLGD R ++E FN+ P +
Sbjct: 95 CGRTHTLVFTSRGN--------LYACGGNNEGQLGLGDCNDRTSFHLVEFFNKQGPIKM- 145
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
+ GS +A LT R + G GQ+G G +AL P++V + + V+
Sbjct: 146 -LAAGSNTSAALTQDGR--------LYMRGDNSEGQIGLGKESNALTPQEV-SVGKRVFW 195
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
VS CG +H++ V+ G ++++G + LGL L ++ ++ I
Sbjct: 196 VS--CGYYHSAFVTVDGALYTFGEKDSGKLGLS-TEKLANHKVPQQVTDIP--------- 243
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFK 301
VQVACG HTV +T++ +++S+G G+ G LG G I F + P + E F+
Sbjct: 244 --DRVVQVACGGGHTVALTEN--EVYSFGLGQFGQLGHGTFI--FESRL---PRVVEHFR 294
Query: 302 Q 302
+
Sbjct: 295 K 295
>gi|326673186|ref|XP_685685.5| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 [Danio rerio]
Length = 1053
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 118/273 (43%), Gaps = 47/273 (17%)
Query: 26 WGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLV 85
WGN GG P F G V V CG H V L+ ED
Sbjct: 4 WGNASFGQLGL-GGIDEEVLLEPRRCEFFEGKRVRDVGCGRRHTVFLL--------EDGT 54
Query: 86 CYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y+ G N+ GQLG ++R +P+ + + + + + V+CG HT L ND
Sbjct: 55 VYTCGCNDLGQLG--HEKARKKPEQVVSLDAQN---IVAVSCGEAHTLAL------NDKG 103
Query: 146 ESMCWTFGLGENGQLGHGTTQSAL-VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+ W GLG +GQLG + L VP VK L + V++ V CG +H+ ++ G+++S
Sbjct: 104 QVFAW--GLGSDGQLGLSIVEDCLRVPRTVKSLSE-VHITQVACGYWHSLALARGGEIFS 160
Query: 205 WGMEK----GLGLCPNASLTRNEAGDAISPILISG--NGPHGPKFQDPVQVACGAAHTVL 258
WG K GLG + SP +I P G Q++ G AH+
Sbjct: 161 WGQNKYGQLGLG---------QQGACVCSPQVIQSLQGIPFG-------QISAGGAHSFG 204
Query: 259 VTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+T G ++ WGR + G LG G D P ++
Sbjct: 205 LTLSG-AIFGWGRNKFGQLGLGDNDDRRFPVLL 236
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 131/295 (44%), Gaps = 46/295 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF--TPSPVWDFHGHTVVK 61
I +V G +LA+++ G ++ WG S + G S+V P V + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVFAWG----LGSDGQLGLSIVEDCLRVPRTVKSLSEVHITQ 141
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL-RPKIIETFNQDSPW 120
VACG H +AL GE + SWG N GQLGLG + + + P++I++ Q P+
Sbjct: 142 VACGYWHSLALARGGEIF--------SWGQNKYGQLGLGQQGACVCSPQVIQSL-QGIPF 192
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL--P 178
+++ G H+ LT L + +G + GQLG G P +K L
Sbjct: 193 G--QISAGGAHSFGLT--------LSGAIFGWGRNKFGQLGLGDNDDRRFPVLLKTLRSQ 242
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q VY+ CG HT+ ++ G V+++G G G L N ++P +
Sbjct: 243 QVVYIC---CGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTNHEVNPRKVF---- 289
Query: 239 HGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ V Q+ACG HT+ K+ S+G G +G LGT T + +P V
Sbjct: 290 ---ELMGSVVSQIACGRQHTLAFIPSSGKIDSFGLGGNGQLGTRSTCNRISPTPV 341
>gi|320163137|gb|EFW40036.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 2579
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 27/171 (15%)
Query: 43 VSSFTPSPVWDFH--GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG 100
V S P+ H + + ++CG+EH VA+ + G + Y+WGAN GQLGLG
Sbjct: 1513 VGSLPPARCETLHMNSNRIASISCGAEHTVAITNEG--------MVYAWGANGYGQLGLG 1564
Query: 101 DRESRLRPKIIETFNQDSPWAVYE-----VTCGSFHTALLTHRKRPNDMLESMCWTFGLG 155
D + R +P ++ P ++E V CG FHT LT + W G G
Sbjct: 1565 DTDKRTKPTMLSRLE---PVVMHESRIIQVACGYFHTLFLTDKGE--------VWACGWG 1613
Query: 156 ENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
GQLG G+T +AL+P VK L +V + G H+ V++ +G ++++G
Sbjct: 1614 AQGQLGVGSTSNALLPVHVKILDNK-GIVGLAAGFCHSVVLTESGTLYAFG 1663
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 24/175 (13%)
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT---QSALVPEQVKELPQ 179
Y + CGS H + + + +T+G NGQLGHG +L P + + L
Sbjct: 1476 YVIACGSTHASF---------VYDGDVYTWGSSHNGQLGHGDMIDGVGSLPPARCETLHM 1526
Query: 180 YV-YLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGN 236
+ S+ CG HT +++ G V++WG LGL T+ + P+++
Sbjct: 1527 NSNRIASISCGAEHTVAITNEGMVYAWGANGYGQLGLGDTDKRTKPTMLSRLEPVVM--- 1583
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
H + +QVACG HT+ +TD G ++W+ G G G LG G T + P V
Sbjct: 1584 --HESRI---IQVACGYFHTLFLTDKG-EVWACGWGAQGQLGVGSTSNALLPVHV 1632
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 29/201 (14%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMW-----GNCPLPDSSTEGGFSLVSSFTPSPVWDFHG 56
++I S+ G ++AI N G ++ W G L D+ +++S P + H
Sbjct: 1529 NRIASISCGAEHTVAITNEGMVYAWGANGYGQLGLGDTDKRTKPTMLSRLEPVVM---HE 1585
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+++VACG H + L T KGE C WGA GQLG+G + L P ++ +
Sbjct: 1586 SRIIQVACGYFHTLFL-----TDKGEVWAC-GWGA--QGQLGVGSTSNALLPVHVKILDN 1637
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-HGTTQSALVPEQVK 175
+ + G H+ +LT + FG GQLG GT ++L P V
Sbjct: 1638 K---GIVGLAAGFCHSVVLTE--------SGTLYAFGGNSYGQLGAAGTVLTSLTPFPVA 1686
Query: 176 ELPQYVYLVSVDCGLFHTSVV 196
L V++ + CG F T+ V
Sbjct: 1687 GLAD-VHVTWISCGTFQTACV 1706
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 20/131 (15%)
Query: 39 GFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG 98
F+ VS P+ + H VV+V CG H++ L S G Y C GAN +GQLG
Sbjct: 1826 AFATVSGGIPAALAAADEH-VVQVVCGDWHMLMLTSRGSVY------CL--GANEHGQLG 1876
Query: 99 LGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN 157
+ R PK I F+ P + + G +A + W +G +N
Sbjct: 1877 INSLRPRQEIPKRIGAFDHVPP--IIALAAGEDFSACVD--------AAGQTWIWGRADN 1926
Query: 158 GQLGHGTTQSA 168
GQLG +T +A
Sbjct: 1927 GQLGQESTPNA 1937
Score = 38.1 bits (87), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL-VPEQVKELPQY 180
V +V CG +H +LT R + G E+GQLG + + +P+++
Sbjct: 1845 VVQVVCGDWHMLMLTSRGS--------VYCLGANEHGQLGINSLRPRQEIPKRIGAFDHV 1896
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNAS 218
++++ G ++ V +AG W WG + G PNAS
Sbjct: 1897 PPIIALAAGEDFSACVDAAGQTWIWGRADNGQLGQESTPNAS 1938
>gi|326671858|ref|XP_685964.5| PREDICTED: hypothetical protein LOC557752 [Danio rerio]
Length = 1413
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 135/301 (44%), Gaps = 51/301 (16%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHTVVKVA 63
+ G + + G L+M+G S+ G L + T P+ V V A
Sbjct: 41 ISCGDEHTALVTENGKLFMFG------SNNWGQLGLGTKTTVNKPTCVKALKSERVKLTA 94
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H + S G Y+ G NN GQLGLGD R ++E FN+ P +
Sbjct: 95 CGRTHTLVFTSRGN--------LYACGGNNEGQLGLGDCNDRTSFHLVEFFNKQGPIKM- 145
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
+ GS +A LT R + +G GQ+G G +AL P++V + + V+
Sbjct: 146 -LAAGSNTSAALTQDGR--------LYMWGDNSEGQIGLGKESNALTPQEV-SVGKRVFW 195
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
VS CG +H++ V+ G ++++G + LGL L ++ ++ I
Sbjct: 196 VS--CGYYHSAFVTVDGALYTFGEKDSGKLGLS-TEKLANHKVPQQVTDIP--------- 243
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFK 301
VQVACG HTV +T++ +++S+G G+ G LG G I F + P + E F+
Sbjct: 244 --DRVVQVACGGGHTVALTEN--EVYSFGLGQFGQLGHGTFI--FESRL---PRVVEHFR 294
Query: 302 Q 302
+
Sbjct: 295 K 295
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 109/233 (46%), Gaps = 39/233 (16%)
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+A GS AL G Y WG N+ GQ+GLG + L P+ + +
Sbjct: 146 LAAGSNTSAALTQDGR--------LYMWGDNSEGQIGLGKESNALTPQEVSVGKR----- 192
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA--LVPEQVKELPQ 179
V+ V+CG +H+A +T ++ +TFG ++G+LG T + A VP+QV ++P
Sbjct: 193 VFWVSCGYYHSAFVT--------VDGALYTFGEKDSGKLGLSTEKLANHKVPQQVTDIPD 244
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
V V V CG HT V + +V+S+G+ + G + + + G H
Sbjct: 245 RV--VQVACGGGHT-VALTENEVYSFGLGQ-FGQLGHGTFIFESRLPRVVEHFRKGRVKH 300
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT--IDFFAPAI 290
ACG HT L+TD+G L+++G GR G LG G+ + F P +
Sbjct: 301 ---------AACGENHTALITDNGL-LYTFGDGRHGKLGLGEENFTNQFKPTL 343
>gi|403332050|gb|EJY65013.1| hypothetical protein OXYTRI_14837 [Oxytricha trifallax]
gi|403356523|gb|EJY77858.1| hypothetical protein OXYTRI_00501 [Oxytricha trifallax]
Length = 489
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 131/303 (43%), Gaps = 51/303 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFS-----LVSSFTPSPVWDFHGHT 58
I V A G +S A+ + G ++ WG S + S L+ + +P F
Sbjct: 133 IIQVNASGDISAAVTSQGQIYTWGKTRGGSLSQQKSLSRATNLLLPTLIVAPEVQF---- 188
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG---DRESRLR---PKIIE 112
V+VACG H+ + G+ +WG + G+LG +ES+ + P+
Sbjct: 189 -VQVACGKTHLAGVTKDGK--------LITWGNPDQGKLGHNAQLQQESKNKSYSPRSYA 239
Query: 113 TFNQDS-------PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
+N + + + +CG HTA LT + +T+G G+NG LGHG
Sbjct: 240 DYNAINFVGGALESKKIIQASCGFQHTACLTQ--------DGEVYTWGFGKNGALGHGNW 291
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
+P++V+ L +V +DCG+ +T + G+++SWG + L T++
Sbjct: 292 DQVDLPKKVEGLSN---IVKIDCGMDYTFALDKDGNIYSWGSNRYGQL----GTTQSNIN 344
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
PI + PHG V ++CG H+ + D G + + WG G G LG + +
Sbjct: 345 KHNVPIQLQ--LPHGSSH--VVDISCGEEHSAFLNDKG-EAFIWGYGNDGQLGHKEKTNL 399
Query: 286 FAP 288
P
Sbjct: 400 NQP 402
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 128/308 (41%), Gaps = 66/308 (21%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS------SFTPSPVWDFHG 56
Q V G + G L WGN PD G + + S++P D++
Sbjct: 187 QFVQVACGKTHLAGVTKDGKLITWGN---PDQGKLGHNAQLQQESKNKSYSPRSYADYNA 243
Query: 57 ----------HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
+++ +CG +H L GE Y +WG NG LG G+ +
Sbjct: 244 INFVGGALESKKIIQASCGFQHTACLTQDGEVY--------TWGFGKNGALGHGNWDQVD 295
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
PK +E + + ++ CG +T L + +++G GQLG TTQ
Sbjct: 296 LPKKVEGLSN-----IVKIDCGMDYTFALDK--------DGNIYSWGSNRYGQLG--TTQ 340
Query: 167 SAL----VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD--VWSWGMEKGLGLCPNASLT 220
S + VP Q++ ++V + CG H++ ++ G+ +W +G + LG +L
Sbjct: 341 SNINKHNVPIQLQLPHGSSHVVDISCGEEHSAFLNDKGEAFIWGYGNDGQLGHKEKTNL- 399
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
N P +F +P++ V CG HT ++T G KL+ +GRGR G LG
Sbjct: 400 ---------------NQPKKLEFTEPLRRVVCGGGHTGVITTAG-KLFLFGRGRDGQLGR 443
Query: 280 GKTIDFFA 287
G + A
Sbjct: 444 GDVNESMA 451
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 11/134 (8%)
Query: 146 ESMCWTFGLGENGQLGHGT-TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+ + ++G G+NGQLG+G T S +P V+ L ++ V+ ++ V+S G +++
Sbjct: 96 QKLLLSWGNGQNGQLGNGNETLSLSIPSPVQVLSDED-IIQVNASGDISAAVTSQGQIYT 154
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG +G L SL+R A + + P LI P+ Q VQVACG H VT DG
Sbjct: 155 WGKTRGGSLSQQKSLSR--ATNLLLPTLIV-----APEVQ-FVQVACGKTHLAGVTKDG- 205
Query: 265 KLWSWGRGRSGVLG 278
KL +WG G LG
Sbjct: 206 KLITWGNPDQGKLG 219
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 28/185 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT-V 59
+S I + G + A+D G ++ WG+ T ++ P + HG + V
Sbjct: 303 LSNIVKIDCGMDYTFALDKDGNIYSWGSNRYGQLGTTQS-NINKHNVPIQLQLPHGSSHV 361
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V ++CG EH L GE + WG N+GQLG ++ + +PK +E F +
Sbjct: 362 VDISCGEEHSAFLNDKGE--------AFIWGYGNDGQLGHKEKTNLNQPKKLE-FTE--- 409
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALV-----PEQV 174
+ V CG HT ++T + + FG G +GQLG G ++ P++V
Sbjct: 410 -PLRRVVCGGGHTGVITTAGK--------LFLFGRGRDGQLGRGDVNESMAAFRIEPKEV 460
Query: 175 KELPQ 179
+ Q
Sbjct: 461 VNISQ 465
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 30/206 (14%)
Query: 88 SWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
SWG NGQLG G+ L P ++ + + + +V +A +T +
Sbjct: 101 SWGNGQNGQLGNGNETLSLSIPSPVQVLSDED---IIQVNASGDISAAVTS--------Q 149
Query: 147 SMCWTFGLGENGQLGHGTTQSA----LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV 202
+T+G G L + S L+P + + V V V CG H + V+ G +
Sbjct: 150 GQIYTWGKTRGGSLSQQKSLSRATNLLLPTLI--VAPEVQFVQVACGKTHLAGVTKDGKL 207
Query: 203 WSWGMEKGLGLCPNASLTRNEAGDAISP--------ILISGNGPHGPKFQDPVQVACGAA 254
+WG L NA L + + SP I G K +Q +CG
Sbjct: 208 ITWGNPDQGKLGHNAQLQQESKNKSYSPRSYADYNAINFVGGALESKKI---IQASCGFQ 264
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTG 280
HT +T DG ++++WG G++G LG G
Sbjct: 265 HTACLTQDG-EVYTWGFGKNGALGHG 289
>gi|118095631|ref|XP_413753.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Gallus
gallus]
Length = 4860
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 128/287 (44%), Gaps = 46/287 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLP-----DSSTEGGFSLVSSFTPSPVWDFH 55
+ ++ S K +LA G ++ WG+ +SST+ L+
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQG-------PLQ 509
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G VV V+ G H A+ GE Y+WG + G+LG GD SR P +++ +
Sbjct: 510 GKVVVCVSAGYRHSAAVTEDGE--------LYTWGEGDFGRLGHGDSNSRNIPTLVKDIS 561
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++
Sbjct: 562 N-----VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIE 609
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q +++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 610 AL-QGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEE 661
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
V ++ G +H + ++ D ++++WG G G G +
Sbjct: 662 LAA-----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNS 702
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 124/250 (49%), Gaps = 40/250 (16%)
Query: 58 TVVKVACGSE-HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
T + +CGS+ H +AL +GE + SWG + G+LG G+ + + RP+ IE
Sbjct: 4081 TQLVTSCGSDGHSMALTESGEVF--------SWGDGDYGKLGHGNSDRQRRPRQIEALQG 4132
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ V +++CG H+A++T + +TFG G+ G+LG G T + +PE+V
Sbjct: 4133 EE---VVQMSCGFKHSAVVT--------ADGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4181
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGD-VWSWGMEK--GLGLCPNASLTRNEAGDAISPILI 233
L Y + V CGL HT VS+ G VW++G LGL + + + + D + I I
Sbjct: 4182 LEGY-QIGQVACGLNHTVAVSTDGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDILCGIGI 4240
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
+VACG +V +T DG+ ++++G+ R L G+ + P V
Sbjct: 4241 K-------------KVACGTQFSVALTKDGH-VYTFGQDRLIGLPEGRARNHNRPQQV-- 4284
Query: 294 PPLTEEFKQD 303
P L+ F +D
Sbjct: 4285 PVLSGVFIED 4294
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4093 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4149
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ +++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4150 ADGK--------LFTFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTV 4198
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4199 AVSTDG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDILCG-IGIKKVACGTQFS 4250
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D +A GA
Sbjct: 4251 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQVPVL------SGVFIED---IAVGA 4299
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ ++ G +++WG G LG G T P ++
Sbjct: 4300 EHTLALSSTG-DVYAWGSNSEGQLGLGHTNHVREPTLI 4336
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 24/213 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + G S + G L+ +GN D G + + P V G+ + +V
Sbjct: 4134 EVVQMSCGFKHSAVVTADGKLFTFGN---GDYGRLGLGNTSNKKLPERVTALEGYQIGQV 4190
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG H VA+ + G + +++G + G+LGLG+ ++ P+ ++ +
Sbjct: 4191 ACGLNHTVAVSTDGS-------MVWAFGDGDYGKLGLGNSTAKSSPQKVDIL---CGIGI 4240
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CG+ + LT + +TFG L G ++ P+QV L V+
Sbjct: 4241 KKVACGTQFSVALTK--------DGHVYTFGQDRLIGLPEGRARNHNRPQQVPVL-SGVF 4291
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGL 213
+ + G HT +SS GDV++WG E LGL
Sbjct: 4292 IEDIAVGAEHTLALSSTGDVYAWGSNSEGQLGL 4324
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P V G +
Sbjct: 4240 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQVPVLSGVFIE 4293
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G+EH +AL S G+ Y +WG+N+ GQLGLG P +I +
Sbjct: 4294 DIAVGAEHTLALSSTGDVY--------AWGSNSEGQLGLGHTNHVREPTLITVLQGKN-- 4343
Query: 121 AVYEVTCGSFHTA 133
+ +++ G H+A
Sbjct: 4344 -IRQISAGRCHSA 4355
>gi|417407155|gb|JAA50202.1| Putative e3 ubiquitin-protein ligase herc1 [Desmodus rotundus]
Length = 4853
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLSLTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V ++ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4086 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4142
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4143 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4191
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ S+ W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4192 AVSADG-------SVVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4243
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4244 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 4292
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P +V
Sbjct: 4293 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4329
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4233 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 4286
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4287 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4336
Query: 121 AVYEVTCGSFHTA 133
+ +++ G H+A
Sbjct: 4337 -IRQISAGRCHSA 4348
>gi|417407153|gb|JAA50201.1| Putative e3 ubiquitin-protein ligase herc1 [Desmodus rotundus]
Length = 4846
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLSLTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V ++ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4079 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4135
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4136 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4184
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ S+ W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4185 AVSADG-------SVVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4236
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4237 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 4285
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P +V
Sbjct: 4286 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4322
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4226 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 4279
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4280 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4329
Query: 121 AVYEVTCGSFHTA 133
+ +++ G H+A
Sbjct: 4330 -IRQISAGRCHSA 4341
>gi|380792513|gb|AFE68132.1| RCC1 and BTB domain-containing protein 2, partial [Macaca mulatta]
Length = 369
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 31/249 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + G + ++ GS H+V + GE + +WG N QLG G
Sbjct: 85 STIEPRRLDSLSGKKIASLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTT 136
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P I T S V EV CGS+H+ +LT E W G +GQ+G
Sbjct: 137 NHGLVPCQIST--NLSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGS 186
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + +P +V Q +V++ CG V G+V+ WG N L
Sbjct: 187 GSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNG------NGQLGLG 240
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+G+ +P ++ G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 241 SSGNQPTPCRVAA--LQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGNK 294
Query: 283 IDFFAPAIV 291
+ P V
Sbjct: 295 SNQSYPTPV 303
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 99/230 (43%), Gaps = 50/230 (21%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 154 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTVNQPIPRRVTGCLQNK 205
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + D E W G NGQLG G++ + P +V L
Sbjct: 206 --VVVTIACGQMCCMAVV------DTGEVYVW--GYNGNGQLGLGSSGNQPTPCRVAAL- 254
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + V CG HT V++ G V++WG N G L +GN
Sbjct: 255 QGIRVQRVACGYAHTLVLTDEGQVYAWGA--------------NSYGQ-----LGTGNKS 295
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL 277
+ + PV + AC + HT G ++ WG RG+S +L
Sbjct: 296 N-QSYPTPVTMEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVIL 344
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 22/134 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ + G +++WG + G L SS TP V G V
Sbjct: 207 VVTIACGQMCCMAVVDTGEVYVWG------YNGNGQLGLGSSGNQPTPCRVAALQGIRVQ 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + T +D
Sbjct: 261 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPV-TMEKDR-- 309
Query: 121 AVYEV-TCGSFHTA 133
+ E+ C S HT+
Sbjct: 310 -IIEIAACHSTHTS 322
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 15/140 (10%)
Query: 152 FGLGEN--GQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
F LG N G LG G QS + P ++ L + + +S G H + ++ G+V++WG
Sbjct: 68 FVLGTNCCGCLGLGDVQSTIEPRRLDSLSGKKIASLSYGSGP-HIVLATTEGEVFTWGHN 126
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L + P IS N + + ++VACG+ H++++T DG ++++
Sbjct: 127 A------YSQLGNGTTNHGLVPCQISTNLSN----KQVIEVACGSYHSLVLTSDG-EVFA 175
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG SG +G+G T++ P
Sbjct: 176 WGYNNSGQVGSGSTVNQPIP 195
>gi|224061683|ref|XP_002192615.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Taeniopygia
guttata]
Length = 4864
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 182/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDIIN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V ++ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GGLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VGGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +E Y ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLEHYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSSVPDEIQEVVIETL 846
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4097 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4153
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4154 ADGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTV 4202
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4203 AVSTDG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDILCG-IGIKKVACGTQFS 4254
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D +A GA
Sbjct: 4255 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQVPLLA------GVFIED---IAVGA 4303
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ ++ G +++WG G LG G T P +V
Sbjct: 4304 EHTLALSSTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4340
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG E
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWG-EG 538
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
G + + I+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 539 DFGRLGHGDSNSRNIPTLVKDIINVG------------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 24/213 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + G S + G L+ +GN D G + + P V G+ + +V
Sbjct: 4138 EVVQMSCGFKHSAVVTADGKLFTFGN---GDYGRLGLGNTSNKKLPERVTALEGYQIGQV 4194
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG H VA+ + G + +++G + G+LGLG+ ++ P+ ++ +
Sbjct: 4195 ACGLNHTVAVSTDGS-------MVWAFGDGDYGKLGLGNSTAKSSPQKVDIL---CGIGI 4244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CG+ + LT + +TFG L G ++ P+QV L V+
Sbjct: 4245 KKVACGTQFSVALTK--------DGHVYTFGQDRLIGLPEGRARNHNRPQQVPLLAG-VF 4295
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGL 213
+ + G HT +SS GDV++WG E LGL
Sbjct: 4296 IEDIAVGAEHTLALSSTGDVYAWGSNSEGQLGL 4328
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P V G +
Sbjct: 4244 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQVPLLAGVFIE 4297
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4298 DIAVGAEHTLALSSTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4347
Query: 121 AVYEVTCGSFHTALLTHRKRP 141
V +++ G H+A T P
Sbjct: 4348 -VRQISAGRCHSAAWTAPPVP 4367
>gi|219847607|ref|YP_002462040.1| chromosome condensation regulator RCC1 [Chloroflexus aggregans DSM
9485]
gi|219541866|gb|ACL23604.1| regulator of chromosome condensation RCC1 [Chloroflexus aggregans
DSM 9485]
Length = 776
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 122/292 (41%), Gaps = 43/292 (14%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV-SSFTPSPVWDFHGHTVV 60
S + ++ AGG+ + A+ +G + WG + S + G L TP V V
Sbjct: 257 SGVTAIAAGGVHTCALTGSGGVRCWG----ANYSGQLGNGLTFGRSTPGAVSGLP-SGVT 311
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H AL +G + WG N +GQLG G +R P + P
Sbjct: 312 AIAAGDYHTCALTGSGGVW--------CWGGNYSGQLGDGTTTARSTPVAVSGL----PS 359
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G +HT L CW G + GQLG GTT + P V LP
Sbjct: 360 GVETIAAGDYHTCALMSSG------GVRCW--GHNDRGQLGDGTTTARSTPVAVSGLPSG 411
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
V ++ G HT +S+G VW WG + G + S T D+ +P+ +SG
Sbjct: 412 VTAIAA--GRLHTCARTSSGGVWCWG-DNSDGQLGDGSFT-----DSSTPVAVSG----- 458
Query: 241 PKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V+ +A G HT +T G +W WGR SG LG G TI P V
Sbjct: 459 --LASGVETIAAGGWHTCALTGSG-GVWCWGRNNSGQLGDGSTIYHITPVAV 507
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 117/291 (40%), Gaps = 39/291 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + ++ AGG + A ++G +W WG D G S S TP V V
Sbjct: 52 LQGVTAIAAGGGHTCARTSSGGVWCWGG---NDFGRLGDGSYTDSSTPVAVSGLP-SGVT 107
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H AL S+GE + WG+N GQLG G +R P + P
Sbjct: 108 AIAAGGAHTCALTSSGEVW--------CWGSNFYGQLGDGSYTTRSTPVAVSGL----PS 155
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G +HT T W +G GQLG GTT P V LP
Sbjct: 156 GVTAIAAGGWHTCARTS--------SGGVWCWGGNYRGQLGDGTTTDRSTPVAVSGLPSE 207
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
V ++ G HT S+G+VW WG G + S T D+ +P+ +SG P G
Sbjct: 208 VTAIAA--GDAHTCARMSSGEVWCWGGNN-YGQLGDGSYT-----DSSTPVAVSGL-PSG 258
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A G HT +T G + WG SG LG G T P V
Sbjct: 259 VT-----AIAAGGVHTCALTGSG-GVRCWGANYSGQLGNGLTFGRSTPGAV 303
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 116/290 (40%), Gaps = 40/290 (13%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S + ++ AGG + A+ +G +W WG +S G S + TP V V
Sbjct: 461 SGVETIAAGGWHTCALTGSGGVWCWGR---NNSGQLGDGSTIYHITPVAVSGLP-SGVTA 516
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+A G H AL +G + WG N GQLG G R P + P
Sbjct: 517 IAAGGVHTCALTGSGGVW--------CWGGNFAGQLGDGTTTDRSTPVAVSGL----PSG 564
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V + G HT LT W +G + GQLG GTT + P V LP V
Sbjct: 565 VTAIAAGDIHTCALTG--------SGGVWCWGGNDFGQLGDGTTTNRSTPVAVSGLPSGV 616
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++ GL +T ++ +G VW WG G + + +R+ +P+ +SG P G
Sbjct: 617 TAIAA--GLRYTCALTGSGGVWCWGYNL-SGQLDDGTTSRS------TPVAVSGL-PSGV 666
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A G +T T G + WG SG LG G T P V
Sbjct: 667 T-----AIAAGGWYTCARTSSG-GVRCWGANGSGQLGDGTTTKRSTPVAV 710
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 86/338 (25%), Positives = 124/338 (36%), Gaps = 84/338 (24%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGN--------------------CPLPDSST---EG 38
S + ++ AGG + A+ ++G +W WG+ LP T G
Sbjct: 104 SGVTAIAAGGAHTCALTSSGEVWCWGSNFYGQLGDGSYTTRSTPVAVSGLPSGVTAIAAG 163
Query: 39 GFSLVSSFTPSPVWDFHGHT------------------------VVKVACGSEHVVALVS 74
G+ + + VW + G+ V +A G H A +S
Sbjct: 164 GWHTCARTSSGGVWCWGGNYRGQLGDGTTTDRSTPVAVSGLPSEVTAIAAGDAHTCARMS 223
Query: 75 AGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTAL 134
+GE + WG NN GQLG G P + P V + G HT
Sbjct: 224 SGEV--------WCWGGNNYGQLGDGSYTDSSTPVAVSGL----PSGVTAIAAGGVHTCA 271
Query: 135 LTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTS 194
LT CW G +GQLG+G T P V LP V ++ G +HT
Sbjct: 272 LTGSG------GVRCW--GANYSGQLGNGLTFGRSTPGAVSGLPSGVTAIAA--GDYHTC 321
Query: 195 VVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAA 254
++ +G VW WG L + R+ +P+ +SG P G + +A G
Sbjct: 322 ALTGSGGVWCWGGNYSGQLGDGTTTARS------TPVAVSGL-PSGVE-----TIAAGDY 369
Query: 255 HT-VLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT L++ G + WG G LG G T P V
Sbjct: 370 HTCALMSSGGVRC--WGHNDRGQLGDGTTTARSTPVAV 405
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 82/205 (40%), Gaps = 27/205 (13%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S + ++ AG + + A+ +G +W WG D G + + TP V V
Sbjct: 563 SGVTAIAAGDIHTCALTGSGGVWCWGG---NDFGQLGDGTTTNRSTPVAVSGLP-SGVTA 618
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+A G + AL +G + WG N +GQL G SR P + P
Sbjct: 619 IAAGLRYTCALTGSGGVW--------CWGYNLSGQLDDG-TTSRSTPVAVSGL----PSG 665
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V + G ++T T CW G +GQLG GTT P V LP V
Sbjct: 666 VTAIAAGGWYTCARTSSG------GVRCW--GANGSGQLGDGTTTKRSTPVAVSGLPSGV 717
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWG 206
++ G HT + S+G VW WG
Sbjct: 718 TAIAA--GGEHTCALMSSGGVWCWG 740
>gi|270001313|gb|EEZ97760.1| hect domain and RLD 2-like protein [Tribolium castaneum]
Length = 816
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 116/264 (43%), Gaps = 36/264 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I V+ GG S AI GAL+ WG + G + TP+ + ++KVA
Sbjct: 569 IIDVECGGTYSAAISANGALYTWGR---GNYGRLGHGTAEDCLTPTMISALSDEHIIKVA 625
Query: 64 CGS--EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
CGS H + + S G+ Y SWG + G+LG G + P++IE
Sbjct: 626 CGSFYAHTLCITSQGKVY--------SWGDGDYGKLGRGGSDGSKLPRLIEKLQNVK--- 674
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ +V CG+ + L+ + +T+G GE +LGH T ++ PE V E+ +
Sbjct: 675 IVQVYCGAQFSVALSE--------DGHVYTWGKGEGWKLGHPTEENVRFPEMV-EVLRDR 725
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+V V G+ H ++ G+V+ WG + +C ++ L + P LI
Sbjct: 726 KVVGVSLGVSHVLALTDQGEVYGWGKNENKQICDSSELFVQQ------PRLI-----EAL 774
Query: 242 KFQDPVQVACGAAHTVLVTDDGYK 265
K Q V V CG A + TDD +
Sbjct: 775 KGQKVVGVCCGPAQSFAWTDDNER 798
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 40/226 (17%)
Query: 59 VVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
V+K+A E H +AL +D YSWG + G+LG GD ++ P +I+
Sbjct: 515 VIKIAAHPEGKHYLALT--------KDYEVYSWGNGDGGRLGHGDTSTKEEPTLIQALKG 566
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ +V CG ++A ++ N L +T+G G G+LGHGT + L P +
Sbjct: 567 KD---IIDVECGGTYSAAIS----ANGAL----YTWGRGNYGRLGHGTAEDCLTPTMISA 615
Query: 177 LPQYVYLVSVDCGLF--HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS 234
L +++ V CG F HT ++S G V+SWG + G L R + + P LI
Sbjct: 616 LSDE-HIIKVACGSFYAHTLCITSQGKVYSWG-DGDYG-----KLGRGGSDGSKLPRLIE 668
Query: 235 GNGPHGPKFQDP--VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
K Q+ VQV CGA +V +++DG+ +++WG+G LG
Sbjct: 669 -------KLQNVKIVQVYCGAQFSVALSEDGH-VYTWGKGEGWKLG 706
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 15/133 (11%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG T + P ++ L + ++ V+CG +++ +S+ G +++WG
Sbjct: 537 YSWGNGDGGRLGHGDTSTKEEPTLIQAL-KGKDIIDVECGGTYSAAISANGALYTWGRGN 595
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGYKLW 267
L A D ++P +IS + ++VACG+ AHT+ +T G K++
Sbjct: 596 ------YGRLGHGTAEDCLTPTMISALSD-----EHIIKVACGSFYAHTLCITSQG-KVY 643
Query: 268 SWGRGRSGVLGTG 280
SWG G G LG G
Sbjct: 644 SWGDGDYGKLGRG 656
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
H ++ +V+SWG G L + T+ E P LI K +D + V C
Sbjct: 526 HYLALTKDYEVYSWGNGDGGRLGHGDTSTKEE------PTLI-----QALKGKDIIDVEC 574
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G ++ ++ +G L++WGRG G LG G D P ++
Sbjct: 575 GGTYSAAISANG-ALYTWGRGNYGRLGHGTAEDCLTPTMI 613
>gi|296189286|ref|XP_002742716.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 3
[Callithrix jacchus]
Length = 556
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 105/225 (46%), Gaps = 34/225 (15%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
K+AC S H+V + GE + +WG N QLG G L P I T
Sbjct: 104 KIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTTNHGLVPCHIST--N 153
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V EV CGS+H+ +LT E W G +GQ+G G+T + P +V
Sbjct: 154 LSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGSGSTVNQPTPRRVTG 205
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q +V++ CG V +G+V+ WG N L +G+ +P ++
Sbjct: 206 CLQNKVVVTIACGQMCCMAVVDSGEVYVWGYNG------NGQLGLGNSGNQPTPCRVA-- 257
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 258 ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGN 298
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 106/259 (40%), Gaps = 57/259 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 159 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTVNQPTPRRVTGCLQNK 210
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + D E W G NGQLG G + + P +V L
Sbjct: 211 --VVVTIACGQMCCMAVV------DSGEVYVW--GYNGNGQLGLGNSGNQPTPCRVAAL- 259
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + V CG HT V++ G V++WG N G L +GN
Sbjct: 260 QGIRVQRVACGYAHTLVLTDEGQVYAWGA--------------NSYGQ-----LGTGNKS 300
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTG 280
+ + PV V AC + HT G ++ WG RG+S +L T
Sbjct: 301 N-QSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTD 359
Query: 281 KTIDFFAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 360 DVFACFATPAVTWRLLSVE 378
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ ++G +++WG + G L +S TP V G V
Sbjct: 212 VVTIACGQMCCMAVVDSGEVYVWG------YNGNGQLGLGNSGNQPTPCRVAALQGIRVQ 265
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + T +D
Sbjct: 266 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPV-TVEKDRII 316
Query: 121 AVYEVTCGSFHTA 133
+ C S HT+
Sbjct: 317 EI--AACHSTHTS 327
>gi|431911482|gb|ELK13688.1| Putative E3 ubiquitin-protein ligase HERC3 [Pteropus alecto]
Length = 1017
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 139/296 (46%), Gaps = 48/296 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I V G SLA+ + G L+ WG + ++G L+++ P + + T+
Sbjct: 133 IVHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQTI 186
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDS 118
++V+CG+ H +AL + G+ + +WG N++GQLGLG S+ P+ + + +
Sbjct: 187 LQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQASPQRVRSL-EGI 237
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 238 PLA--QVAAGGAHSFALS--------LSGAVFAWGMNNAGQLGLSDEEDRESPCHVK-LL 286
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILISG 235
+ +V + CG HT+V++ +G V+++G G C L + D ++P + + G
Sbjct: 287 RTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELMG 340
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 341 S--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 388
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 109/241 (45%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG +RE +I +Q+
Sbjct: 82 SVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLG-HEREGNKPEQIGALADQN 132
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 133 ----IVHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 180
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q L V CG +H +++ G ++WG + GLG AS R + + I P
Sbjct: 181 LNQQTIL-QVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGI-P 238
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G +++WG +G LG D +P
Sbjct: 239 L---------------AQVAAGGAHSFALSLSG-AVFAWGMNNAGQLGLSDEEDRESPCH 282
Query: 291 V 291
V
Sbjct: 283 V 283
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 239 LAQVAAGGAHSFALSLSGAVFAWG---MNNAGQLGLSDEEDRESPCHVKLLRTQKVVYIS 295
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 296 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 343
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 344 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 389
>gi|338530520|ref|YP_004663854.1| RCC1 repeat-containing protein [Myxococcus fulvus HW-1]
gi|337256616|gb|AEI62776.1| RCC1 repeat-containing protein [Myxococcus fulvus HW-1]
Length = 1457
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 123/295 (41%), Gaps = 49/295 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + +V AG SLA+ G +W WG + L TE G TP PV G
Sbjct: 149 LTDVVAVAAGDFHSLALRGDGTVWAWGTNFHGQLGRGHTEPGL------TPEPVPGLEG- 201
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +A G + +A++ +D +WGAN++GQLG G RL P + +
Sbjct: 202 -VVALAAGFDFTLAVM--------DDGTVRAWGANSSGQLGDGTFTQRLAPVEVAHIS-- 250
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ VT G++H L + WT+G +GQLG G VP +V L
Sbjct: 251 ---GISAVTAGTYHAVALGK--------DGGVWTWGANSSGQLGDGAWSDRAVPARVPGL 299
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ + S+D + AG V +WG L + + R G+
Sbjct: 300 ERVKAVASMDASSL---ALLEAGSVLAWGANGSGQLGDSGTDDRATPGEV---------- 346
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
P + V GA H + + DG LW+WG G +G LG G + PA +L
Sbjct: 347 ---PGLRSVAAVVGGAQHALALRGDG-TLWAWGGGLAGQLGHGGSERHVVPAPLL 397
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 121/301 (40%), Gaps = 53/301 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + S+ AG SLA G +W WG L D +T + V G
Sbjct: 399 LADVASMAAGSFHSLAALGDGTVWSWGRNTYGQLGDGTTAERHAAVR---------VEGL 449
Query: 58 TVVK-VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+ ++ VA H +A+ G D ++WG N GQLG G R RP +
Sbjct: 450 SGIRGVAASGHHSLAV--------GADGTVWAWGRNAAGQLGDGSTRDRARPVAVSGLT- 500
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+V V G HT L + W +G GQLG GTT L P +V
Sbjct: 501 ----SVVAVATGGSHTMALRG--------DGTVWAWGYNALGQLGDGTTVDRLTPVRVAR 548
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L +V+V G + + + G VW+WG + + R + P+ ++G
Sbjct: 549 LDS---VVAVAAGTYFSMALRGDGTVWTWGEGFEGQVGDGGGVQR------LFPVQVAG- 598
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPL 296
+ +VA G+AH + V DG +W+WG G LG G D F P V P L
Sbjct: 599 ------LTNVTRVAAGSAHALAVRGDG-TVWAWGDNGEGQLGDGTWSDRFRPVQV--PGL 649
Query: 297 T 297
T
Sbjct: 650 T 650
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 118/300 (39%), Gaps = 55/300 (18%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFS-----LVSSFTPSPVWDFHGHTVVK 61
+ AG SL + GA+W WG S GG + L + PSP +V
Sbjct: 54 IAAGSQHSLYVSPTGAVWAWGGN---TSGQLGGEATPLQRLAPAPLPSP------RDIVS 104
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
V G H +AL AG ++WG N++GQLG G R+ P +
Sbjct: 105 VVSGEAHSLALDEAG--------TVWAWGGNSSGQLGDGTTTDRVTPMQVAGLTD----- 151
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V V G FH+ L + W +G +GQLG G T+ L PE V P
Sbjct: 152 VVAVAAGDFHSLALRG--------DGTVWAWGTNFHGQLGRGHTEPGLTPEPV---PGLE 200
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+V++ G T V G V +WG G + + T+ ++P+ ++
Sbjct: 201 GVVALAAGFDFTLAVMDDGTVRAWGANSS-GQLGDGTFTQR-----LAPVEVA------- 247
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFK 301
V G H V + DG +W+WG SG LG G D PA V P E K
Sbjct: 248 HISGISAVTAGTYHAVALGKDG-GVWTWGANSSGQLGDGAWSDRAVPARV---PGLERVK 303
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 133/336 (39%), Gaps = 64/336 (19%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + +V G SLA+ + G +W WG L D +T +S TP V
Sbjct: 1155 LTGVVAVSTGAWHSLALRSDGTVWAWGANGFGQLGDGTT------LSRTTPVRVAGL--Q 1206
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV + G H +A+ S G ++WG N GQLG G ESRL P +E +
Sbjct: 1207 KVVAIGAGGYHALAVRSDGS--------VWAWGYNAFGQLGDGTAESRLLPVRVEGLSN- 1257
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V V G H+ L + + +G GQLG GT + VK +
Sbjct: 1258 ----VTSVAGGDHHSLAL--------LADGSLGAWGNNAAGQLGDGTGTTRYSRVWVKGV 1305
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISG 235
+V V G HT + G VW+WG LG +++ TR I P +
Sbjct: 1306 DG---VVEVRAGAAHTLALRGDGTVWTWGDNTHSQLGAGDDSTRTR------IVPRPV-- 1354
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
P + GA H+ V G +W+WGR G LG G + P V
Sbjct: 1355 -----PGLSGVTAIGAGARHSFAVGPKG-TVWAWGRNSHGQLGLGDNANRAEPLRV---- 1404
Query: 296 LTEEFKQDELNTGGLDDEIKTKDLEGAEERDEKLSS 331
+E + + +GG D + A +RD +SS
Sbjct: 1405 --KELAEVSVVSGGADFSL-------AMQRDGTVSS 1431
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 118/300 (39%), Gaps = 53/300 (17%)
Query: 3 QICSVK------AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHG 56
Q+ SVK AG +A+ GA+W WG+ L + T +P W +
Sbjct: 995 QVTSVKRVRAMSAGAHHVVALGEDGAVWTWGDNTLGQ---------LGDGTSAPTWMWPR 1045
Query: 57 HT-----VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
V VA G + VA++ G ++WG+N GQLG G RL P +
Sbjct: 1046 QVPELRDVEAVAAGEQFSVAVLVGGG--------AHAWGSNEYGQLGDGKTGPRLTPVQV 1097
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
V V + H L M + +G +GQLG GTT+ P
Sbjct: 1098 RIEASKLRQPVRTVRAWAQHAVAL--------MADGTVQAWGDNAHGQLGDGTTERRAAP 1149
Query: 172 EQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPI 231
V+ L +V+V G +H+ + S G VW+WG L +L+R +P+
Sbjct: 1150 VVVRGL---TGVVAVSTGAWHSLALRSDGTVWAWGANGFGQLGDGTTLSRT------TPV 1200
Query: 232 LISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++G Q V + G H + V DG +W+WG G LG G P V
Sbjct: 1201 RVAG-------LQKVVAIGAGGYHALAVRSDG-SVWAWGYNAFGQLGDGTAESRLLPVRV 1252
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 117/292 (40%), Gaps = 45/292 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S I +V AG ++A+ G +W WG S G + P+ V V
Sbjct: 249 ISGISAVTAGTYHAVALGKDGGVWTWGAN---SSGQLGDGAWSDRAVPARVPGLE--RVK 303
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA +AL+ AG +WGAN +GQLG + R P +
Sbjct: 304 AVASMDASSLALLEAGS--------VLAWGANGSGQLGDSGTDDRATPGEVPGLR----- 350
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+V V G+ H L + W +G G GQLGHG ++ +VP + L
Sbjct: 351 SVAAVVGGAQHALALRG--------DGTLWAWGGGLAGQLGHGGSERHVVPAPLLRLAD- 401
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG-NGPH 239
+ S+ G FH+ G VWSWG L + R+ A + + G +G
Sbjct: 402 --VASMAAGSFHSLAALGDGTVWSWGRNTYGQLGDGTTAERHAA------VRVEGLSGIR 453
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G VA H++ V DG +W+WGR +G LG G T D P V
Sbjct: 454 G--------VAASGHHSLAVGADG-TVWAWGRNAAGQLGDGSTRDRARPVAV 496
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 125/298 (41%), Gaps = 53/298 (17%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
S I SV G LA GALW WG + L + ST TPSP T
Sbjct: 900 SNIMSVALGETHGLAAGEDGALWAWGANGSGQLGEGST----------TPSP-------T 942
Query: 59 VVKVACGSEHVVALVSAGETYK---GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
V+V G E V A VSAG + +D ++WGAN +GQLG G S+ PK + +
Sbjct: 943 PVRVK-GLEGV-ASVSAGRAFSLAVRQDGTAWAWGANPSGQLGDGTNHSQRVPKQVTSVK 1000
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA-LVPEQV 174
+ V ++ G+ H L + WT+G GQLG GT+ + P QV
Sbjct: 1001 R-----VRAMSAGAHHVVALGE--------DGAVWTWGDNTLGQLGDGTSAPTWMWPRQV 1047
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS 234
EL + +V G + V G +WG + L + G ++P+ +
Sbjct: 1048 PELRD---VEAVAAGEQFSVAVLVGGGAHAWGSNE------YGQLGDGKTGPRLTPVQVR 1098
Query: 235 GNGPHGPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + PV+ V A H V + DG + +WG G LG G T AP +V
Sbjct: 1099 ---IEASKLRQPVRTVRAWAQHAVALMADG-TVQAWGDNAHGQLGDGTTERRAAPVVV 1152
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 95/231 (41%), Gaps = 41/231 (17%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE--SRLRPKIIETFNQD 117
+++A GS+H + Y ++WG N +GQLG G+ RL P +
Sbjct: 52 MRIAAGSQHSL--------YVSPTGAVWAWGGNTSGQLG-GEATPLQRLAPAPLP----- 97
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
SP + V G H+ L W +G +GQLG GTT + P QV L
Sbjct: 98 SPRDIVSVVSGEAHSLALDE--------AGTVWAWGGNSSGQLGDGTTTDRVTPMQVAGL 149
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+V+V G FH+ + G VW+WG + L R ++P +
Sbjct: 150 TD---VVAVAAGDFHSLALRGDGTVWAWGTNF------HGQLGRGHTEPGLTPEPV---- 196
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
P + V +A G T+ V DDG + +WG SG LG G AP
Sbjct: 197 ---PGLEGVVALAAGFDFTLAVMDDG-TVRAWGANSSGQLGDGTFTQRLAP 243
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 121/301 (40%), Gaps = 55/301 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ ++ ++ AGG +LA+ + G++W WG L D + E S P V
Sbjct: 1205 LQKVVAIGAGGYHALAVRSDGSVWAWGYNAFGQLGDGTAE------SRLLPVRVEGL--S 1256
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V VA G H +AL++ G +WG N GQLG G +R ++ +
Sbjct: 1257 NVTSVAGGDHHSLALLADGS--------LGAWGNNAAGQLGDGTGTTRYSRVWVKGVD-- 1306
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG--TTQSALVPEQVK 175
V EV G+ HT L + WT+G + QLG G +T++ +VP +
Sbjct: 1307 ---GVVEVRAGAAHTLALRG--------DGTVWTWGDNTHSQLGAGDDSTRTRIVP---R 1352
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILI 233
+P + ++ G H+ V G VW+WG LGL NA+ R E P+ +
Sbjct: 1353 PVPGLSGVTAIGAGARHSFAVGPKGTVWAWGRNSHGQLGLGDNAN--RAE------PLRV 1404
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
K V V G A L + SWG G LG G +P V
Sbjct: 1405 --------KELAEVSVVSGGADFSLAMQRDGTVSSWGSSLHGALGLGTAGQRSSPGQVAL 1456
Query: 294 P 294
P
Sbjct: 1457 P 1457
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 116/280 (41%), Gaps = 49/280 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ +V+A ++A+ G + WG+ L D +TE P V G VV
Sbjct: 1108 VRTVRAWAQHAVALMADGTVQAWGDNAHGQLGDGTTE------RRAAPVVVRGLTG--VV 1159
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V+ G+ H +AL S D ++WGAN GQLG G SR P + +
Sbjct: 1160 AVSTGAWHSLALRS--------DGTVWAWGANGFGQLGDGTTLSRTTPVRVAGLQK---- 1207
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G +H L R + W +G GQLG GT +S L+P +V+ L
Sbjct: 1208 -VVAIGAGGYHA--LAVRS------DGSVWAWGYNAFGQLGDGTAESRLLPVRVEGLSN- 1257
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ SV G H+ + + G + +WG L TR S + + G
Sbjct: 1258 --VTSVAGGDHHSLALLADGSLGAWGNNAAGQLGDGTGTTR------YSRVWVKG----- 1304
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
V+V GAAHT+ + DG +W+WG LG G
Sbjct: 1305 --VDGVVEVRAGAAHTLALRGDG-TVWTWGDNTHSQLGAG 1341
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 114/312 (36%), Gaps = 53/312 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPS-----PVWDFH 55
+ + +V AG S+A+ G +W WG GF PV
Sbjct: 549 LDSVVAVAAGTYFSMALRGDGTVWTWGE----------GFEGQVGDGGGVQRLFPVQVAG 598
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
V +VA GS H +A+ D ++WG N GQLG G R RP +
Sbjct: 599 LTNVTRVAAGSAHALAVRG--------DGTVWAWGDNGEGQLGDGTWSDRFRPVQVPGLT 650
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
+ V+ G H+ L + +G GQLG GT S + P V
Sbjct: 651 -----GITAVSGGRSHSMALHG--------DGSVRAWGYNGYGQLGDGTFTSRVRPAVV- 696
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
P + ++ H + + G + WG + L AG + P+ + G
Sbjct: 697 --PGLTGIQALHPSHLHVLALHADGTLRGWGYNR------FGQLGLGAAGWSSRPVQVRG 748
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
G ++A G AHT++V DG L +WG SG LG G T P +V P
Sbjct: 749 LG-------RVDRLAVGRAHTLMVRPDGAVL-AWGENASGQLGDGTTTHRAGPVLVRGVP 800
Query: 296 LTEEFKQDELNT 307
L++
Sbjct: 801 CVRSVASGVLHS 812
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 90/222 (40%), Gaps = 38/222 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V VA G H +AL G ++WGAN GQLG G SR+ P ++
Sbjct: 802 VRSVASGVLHSLALACDGS--------VWAWGANGRGQLGDGTTASRVIPARVDGLQGAV 853
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
G ALL + W +G +GQLG G+T VP Q+K LP
Sbjct: 854 ----AVAAGGDASLALLA---------DGTAWAWGANAHGQLGDGSTSDRAVPGQLK-LP 899
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +SV G H G +W+WG G G S T + +P+ + G
Sbjct: 900 SNI--MSVALGETHGLAAGEDGALWAWG-ANGSGQLGEGSTTPSP-----TPVRVKG--- 948
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ V+ G A ++ V DG W+WG SG LG G
Sbjct: 949 ----LEGVASVSAGRAFSLAVRQDGTA-WAWGANPSGQLGDG 985
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 109/287 (37%), Gaps = 60/287 (20%)
Query: 14 SLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVV 70
SLA+ G W WG + L D ST PS ++ VA G H +
Sbjct: 862 SLALLADGTAWAWGANAHGQLGDGSTSDRAVPGQLKLPS--------NIMSVALGETHGL 913
Query: 71 ALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF 130
A GED ++WGAN +GQLG G P ++ V V+ G
Sbjct: 914 A--------AGEDGALWAWGANGSGQLGEGSTTPSPTPVRVKGLE-----GVASVSAGRA 960
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
+ L R+ + W +G +GQLG GT S VP+QV + + + ++ G
Sbjct: 961 FS--LAVRQ------DGTAWAWGANPSGQLGDGTNHSQRVPKQVTSVKR---VRAMSAGA 1009
Query: 191 FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS------PILISGNGPHGPKFQ 244
H + G VW+WG T + GD S P + P+ +
Sbjct: 1010 HHVVALGEDGAVWTWGDN-----------TLGQLGDGTSAPTWMWPRQV-------PELR 1051
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D VA G +V V G +WG G LG GKT P V
Sbjct: 1052 DVEAVAAGEQFSVAVLVGGGAH-AWGSNEYGQLGDGKTGPRLTPVQV 1097
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 124/335 (37%), Gaps = 87/335 (25%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + V AG +LA+ G +W WG+ G + F P V G +
Sbjct: 599 LTNVTRVAAGSAHALAVRGDGTVWAWGDN---GEGQLGDGTWSDRFRPVQVPGLTG--IT 653
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII--------- 111
V+ G H +AL G +WG N GQLG G SR+RP ++
Sbjct: 654 AVSGGRSHSMALHGDGS--------VRAWGYNGYGQLGDGTFTSRVRPAVVPGLTGIQAL 705
Query: 112 ---------------------ETFNQ----DSPWA-----------VYEVTCGSFHTALL 135
F Q + W+ V + G HT ++
Sbjct: 706 HPSHLHVLALHADGTLRGWGYNRFGQLGLGAAGWSSRPVQVRGLGRVDRLAVGRAHTLMV 765
Query: 136 THRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
RP+ + + W GEN GQLG GTT P V+ +P + SV G+ H+
Sbjct: 766 ----RPDGAV--LAW----GENASGQLGDGTTTHRAGPVLVRGVP---CVRSVASGVLHS 812
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G VW+WG L + +R + P + G Q V VA G
Sbjct: 813 LALACDGSVWAWGANGRGQLGDGTTASR------VIPARVDG-------LQGAVAVAAGG 859
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
++ + DG W+WG G LG G T D P
Sbjct: 860 DASLALLADGTA-WAWGANAHGQLGDGSTSDRAVP 893
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 78/209 (37%), Gaps = 30/209 (14%)
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPN 142
D +WG N +GQLG G R P ++ V V G H+ L
Sbjct: 768 DGAVLAWGENASGQLGDGTTTHRAGPVLVRGVP-----CVRSVASGVLHSLALA------ 816
Query: 143 DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV 202
+ W +G GQLG GTT S ++P +V L V + + + + G
Sbjct: 817 --CDGSVWAWGANGRGQLGDGTTASRVIPARVDGLQGAVAVAAGGDASL---ALLADGTA 871
Query: 203 WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
W+WG L ++ R G P I + VA G H + +D
Sbjct: 872 WAWGANAHGQLGDGSTSDRAVPGQLKLPSNI-------------MSVALGETHGLAAGED 918
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G LW+WG SG LG G T P V
Sbjct: 919 G-ALWAWGANGSGQLGEGSTTPSPTPVRV 946
>gi|147857410|emb|CAN82853.1| hypothetical protein VITISV_028768 [Vitis vinifera]
Length = 1156
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 132/298 (44%), Gaps = 45/298 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-------DFHGHT 58
SV G + A+ ++G L+ WG+ G LV W +G +
Sbjct: 363 SVSCGEYQTCALTHSGELYTWGD-------NGSGIDLVGERRKRSQWIPSRLSGPLNGTS 415
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ VACG H+ + ++G+ + ++G G LG G ES +PK +E+ S
Sbjct: 416 ISNVACGEWHMAIVSTSGQLF--------TYGDGTFGVLGHGKLESISQPKEVESL---S 464
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESM---CWTFGLGENGQLGHGTTQSALVPEQVK 175
V CG +HTA + + + +T+G G+ G+LGHG + L+P V
Sbjct: 465 GLWVKAAACGPWHTAAIVEVRADRLKFNTKGGKLFTWGDGDKGRLGHGDQERKLLPTCVA 524
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
+L + + V V CG T ++ G V++ +G + L +A D I+
Sbjct: 525 QLVDHDF-VQVSCGRMLTVGLTCLGTVYT------MGSAVHGQLGNPQAKDKSIAIV--- 574
Query: 236 NGPHGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K +D +++ G+ H +T G L++WG G +G LG G T D +PA+V
Sbjct: 575 ----GGKLKDEFVKEISSGSYHVAALTSKG-SLYTWGMGANGQLGLGDTEDRNSPAVV 627
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 95/206 (46%), Gaps = 29/206 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y +G N G + L PK++E+ + V E++ G H AL+T E
Sbjct: 283 YRFGNQN------GMQSDALLPKLLES---TTMLDVREISLGGKHAALVTKHG------E 327
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
CW G G G LGH P+ V+ L V + SV CG + T ++ +G++++WG
Sbjct: 328 VFCW--GEGSGGXLGHKVNMDMGNPKIVESLTG-VLVKSVSCGEYQTCALTHSGELYTWG 384
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGP-HGPKFQDPVQVACGAAHTVLVTDDGYK 265
+ G G+ + R + I L +GP +G + VACG H +V+ G +
Sbjct: 385 -DNGSGI--DLVGERRKRSQWIPSRL---SGPLNGTSISN---VACGEWHMAIVSTSG-Q 434
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIV 291
L+++G G GVLG GK P V
Sbjct: 435 LFTYGDGTFGVLGHGKLESISQPKEV 460
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +++ GS HV AL S G Y +WG NGQLGLGD E R P ++E
Sbjct: 583 VKEISSGSYHVAALTSKGSLY--------TWGMGANGQLGLGDTEDRNSPAVVEALRDRQ 634
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
V + CGS TA + K + +S C
Sbjct: 635 ---VESIACGSGFTAAICLHKSISSTDQSAC 662
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 98/254 (38%), Gaps = 48/254 (18%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80
G L+ WG+ D G P+ V H V+V+CG V L G Y
Sbjct: 496 GKLFTWGD---GDKGRLGHGDQERKLLPTCVAQLVDHDFVQVSCGRMLTVGLTCLGTVY- 551
Query: 81 GEDLVCYSWGANNNGQLGLGDRESR----LRPKIIETFNQDSPWAVYEVTCGSFHTALLT 136
+ G+ +GQLG + + + K+ + F V E++ GS+H A LT
Sbjct: 552 -------TMGSAVHGQLGNPQAKDKSIAIVGGKLKDEF-------VKEISSGSYHVAALT 597
Query: 137 HRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCG------- 189
+ +T+G+G NGQLG G T+ P V+ L + S+ CG
Sbjct: 598 SK--------GSLYTWGMGANGQLGLGDTEDRNSPAVVEALRDR-QVESIACGSGFTAAI 648
Query: 190 LFHTSVVSS-----AGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
H S+ S+ +G ++G + C N L A + N P +
Sbjct: 649 CLHKSISSTDQSACSGCRMAFGFTRKKHNCYNCGLLFCRACSNKKVL----NASLAPNKK 704
Query: 245 DPVQVACGAAHTVL 258
P +V C +T L
Sbjct: 705 KPFRV-CDPCYTYL 717
>gi|310819121|ref|YP_003951479.1| regulator of chromosome condensation-like protein [Stigmatella
aurantiaca DW4/3-1]
gi|309392193|gb|ADO69652.1| regulator of chromosome condensation-like protein [Stigmatella
aurantiaca DW4/3-1]
Length = 732
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 124/299 (41%), Gaps = 59/299 (19%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S+ +V AG SL + + G +W WG + L D +T P V G
Sbjct: 131 LSEAEAVAAGDGHSLVVRSDGTVWAWGWNSDGQLGDGTTR------ERHVPVQVAGLSGG 184
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VKVA G H +A+ D ++WG N++GQLG G R P + +
Sbjct: 185 --VKVAAGDGHSLAVC--------LDGTVWAWGRNDSGQLGDGTTVQRSAPVQVAGLS-- 232
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V V GS H+ L R + W +G +GQLG GTT + L P QV L
Sbjct: 233 ---GVVAVAAGSSHS--LAVRS------DGTVWAWGRNSDGQLGDGTTSARLTPVQVTGL 281
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD-----AISPIL 232
V+V G+FH+ V S G VW+WG TR + GD +++P+
Sbjct: 282 SGG---VAVAAGMFHSLAVRSDGTVWAWGQN-----------TRGQLGDGSMTASLTPVQ 327
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G + VA G H+++ DG +W+WG G G G AP V
Sbjct: 328 AIG-------LSEGEAVAAGETHSLVARSDG-TVWAWGNNIEGQRGDGSAKTSTAPVQV 378
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 119/291 (40%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S +V AG +LA+ + G +W WG G + + P V G V
Sbjct: 381 LSGGFTVAAGKAHALAVRSDGTVWAWGQNLFGQ---LGDGTRMQRTAPVQVTGLSGG--V 435
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G +H + L D ++WG N +GQLG G R P + +
Sbjct: 436 AVAAGDDHSLGLC--------LDGTVWAWGQNTSGQLGDGTTAQRPAPVQVTELS----- 482
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V G+ H+ ++ + W +G +GQLG GTT++ L P QV L
Sbjct: 483 GVVAVAAGTSHSLAVSS--------DGTVWAWGSNASGQLGDGTTRARLTPVQVAGLSG- 533
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V+V G FH+ V S G VW+WG L + R +P+ +
Sbjct: 534 --VVAVAAGYFHSLAVRSDGTVWAWGNNSFFQLGDGTNTQRP------TPVRV------- 578
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P V A G H++++ DG +W WG G LG G F+P V
Sbjct: 579 PGLSGGVAAAAGYFHSLVLRSDG-TVWGWGNNAYGQLGNGTANASFSPVQV 628
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 121/288 (42%), Gaps = 49/288 (17%)
Query: 7 VKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ AGG SLAI G +W G + L D +T P+ V V VA
Sbjct: 37 LAAGGSHSLAIRPDGTVWAAGSNTSGQLGDGTTS------ERRVPAQVVGL--SDAVLVA 88
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H +A+ S D ++WG N +G+LG G R RP + ++
Sbjct: 89 AGSSHSLAIRS--------DGTAWAWGHNGSGELGDGTTFRRTRPVQVTGLSE-----AE 135
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
V G H+ ++ + W +G +GQLG GTT+ VP QV L V +
Sbjct: 136 AVAAGDGHSLVVRS--------DGTVWAWGWNSDGQLGDGTTRERHVPVQVAGLSGGVKV 187
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+ D H+ V G VW+WG L ++ R+ +P+ ++G
Sbjct: 188 AAGDG---HSLAVCLDGTVWAWGRNDSGQLGDGTTVQRS------APVQVAG-------L 231
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA G++H++ V DG +W+WGR G LG G T P V
Sbjct: 232 SGVVAVAAGSSHSLAVRSDG-TVWAWGRNSDGQLGDGTTSARLTPVQV 278
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 111/270 (41%), Gaps = 43/270 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S+ +V AG SL + G +W WGN G S +S P V G
Sbjct: 331 LSEGEAVAAGETHSLVARSDGTVWAWGNNI---EGQRGDGSAKTSTAPVQVTALSGG--F 385
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H +A+ S D ++WG N GQLG G R R P + +
Sbjct: 386 TVAAGKAHALAVRS--------DGTVWAWGQNLFGQLGDGTRMQRTAPVQVTGLSGG--- 434
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V G H+ L L+ W +G +GQLG GTT P QV EL
Sbjct: 435 --VAVAAGDDHSLGL--------CLDGTVWAWGQNTSGQLGDGTTAQRPAPVQVTELSG- 483
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V+V G H+ VSS G VW+WG L + R ++P+ ++G
Sbjct: 484 --VVAVAAGTSHSLAVSSDGTVWAWGSNASGQLGDGTTRAR------LTPVQVAG----- 530
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWG 270
V VA G H++ V DG +W+WG
Sbjct: 531 --LSGVVAVAAGYFHSLAVRSDG-TVWAWG 557
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 120/294 (40%), Gaps = 49/294 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S + +V AG SLA+ + G +W WG + L D +T + TP V G
Sbjct: 231 LSGVVAVAAGSSHSLAVRSDGTVWAWGRNSDGQLGDGTTS------ARLTPVQVTGLSGG 284
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V VA G H +A+ S D ++WG N GQLG G + L P ++
Sbjct: 285 --VAVAAGMFHSLAVRS--------DGTVWAWGQNTRGQLGDGSMTASLTPVQAIGLSEG 334
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V G H+ L R + W +G GQ G G+ +++ P QV L
Sbjct: 335 EA-----VAAGETHS--LVARS------DGTVWAWGNNIEGQRGDGSAKTSTAPVQVTAL 381
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+V G H V S G VW+WG L + R +P+ ++G
Sbjct: 382 SGGF---TVAAGKAHALAVRSDGTVWAWGQNLFGQLGDGTRMQRT------APVQVTG-- 430
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V VA G H++ + DG +W+WG+ SG LG G T AP V
Sbjct: 431 -----LSGGVAVAAGDDHSLGLCLDG-TVWAWGQNTSGQLGDGTTAQRPAPVQV 478
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 116/288 (40%), Gaps = 43/288 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S V AG SLAI + G W WG+ + S E G T PV
Sbjct: 81 LSDAVLVAAGSSHSLAIRSDGTAWAWGH----NGSGELGDGTTFRRT-RPVQVTGLSEAE 135
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H + + S D ++WG N++GQLG G R P + +
Sbjct: 136 AVAAGDGHSLVVRS--------DGTVWAWGWNSDGQLGDGTTRERHVPVQVAGLSGG--- 184
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+V G H+ + L+ W +G ++GQLG GTT P QV L
Sbjct: 185 --VKVAAGDGHSLAV--------CLDGTVWAWGRNDSGQLGDGTTVQRSAPVQVAGLSG- 233
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V+V G H+ V S G VW+WG L + R ++P+ ++G
Sbjct: 234 --VVAVAAGSSHSLAVRSDGTVWAWGRNSDGQLGDGTTSAR------LTPVQVTG----- 280
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
V VA G H++ V DG +W+WG+ G LG G P
Sbjct: 281 --LSGGVAVAAGMFHSLAVRSDG-TVWAWGQNTRGQLGDGSMTASLTP 325
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 120/293 (40%), Gaps = 49/293 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S + +V AG SLA+ + G +W WG+ L D +T + TP V G
Sbjct: 481 LSGVVAVAAGTSHSLAVSSDGTVWAWGSNASGQLGDGTTR------ARLTPVQVAGLSG- 533
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV VA G H +A+ S D ++WG N+ QLG G R P + +
Sbjct: 534 -VVAVAAGYFHSLAVRS--------DGTVWAWGNNSFFQLGDGTNTQRPTPVRVPGLSGG 584
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
G FH+ +L + W +G GQLG+GT ++ P QV L
Sbjct: 585 -----VAAAAGYFHSLVLRS--------DGTVWGWGNNAYGQLGNGTANASFSPVQVTGL 631
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
V+V G F + V S G V +WG + G + ++T ++P+ ++G
Sbjct: 632 SGG---VAVAAGDFQSLAVRSDGTVRAWG-DNIYGQLGDGTVTTR-----LAPVGVNG-- 680
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ VA G ++ V G L +WG G LG G + A+
Sbjct: 681 -----LSGGMAVAAGNGFSLAVHSGGM-LHAWGYNTDGQLGHGGPSVYVTAAV 727
>gi|296189284|ref|XP_002742715.1| PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 2
[Callithrix jacchus]
Length = 577
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 105/225 (46%), Gaps = 34/225 (15%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
K+AC S H+V + GE + +WG N QLG G L P I T
Sbjct: 125 KIACLSYGSGPHIVLATTEGEVF--------TWGHNAYSQLGNGTTNHGLVPCHIST--N 174
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V EV CGS+H+ +LT E W G +GQ+G G+T + P +V
Sbjct: 175 LSNKQVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGSGSTVNQPTPRRVTG 226
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q +V++ CG V +G+V+ WG N L +G+ +P ++
Sbjct: 227 CLQNKVVVTIACGQMCCMAVVDSGEVYVWGYNG------NGQLGLGNSGNQPTPCRVA-- 278
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
G + Q +VACG AHT+++TD+G ++++WG G LGTG
Sbjct: 279 ALQGIRVQ---RVACGYAHTLVLTDEG-QVYAWGANSYGQLGTGN 319
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 106/259 (40%), Gaps = 57/259 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 180 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTVNQPTPRRVTGCLQNK 231
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + D E W G NGQLG G + + P +V L
Sbjct: 232 --VVVTIACGQMCCMAVV------DSGEVYVW--GYNGNGQLGLGNSGNQPTPCRVAAL- 280
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + V CG HT V++ G V++WG N G L +GN
Sbjct: 281 QGIRVQRVACGYAHTLVLTDEGQVYAWGA--------------NSYGQ-----LGTGNKS 321
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTG 280
+ + PV V AC + HT G ++ WG RG+S +L T
Sbjct: 322 N-QSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTD 380
Query: 281 KTIDFFAPAIVLWPPLTEE 299
FA V W L+ E
Sbjct: 381 DVFACFATPAVTWRLLSVE 399
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M +A+ ++G +++WG + G L +S TP V G V
Sbjct: 233 VVTIACGQMCCMAVVDSGEVYVWG------YNGNGQLGLGNSGNQPTPCRVAALQGIRVQ 286
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACG H + L G+ Y +WGAN+ GQLG G++ ++ P + T +D
Sbjct: 287 RVACGYAHTLVLTDEGQVY--------AWGANSYGQLGTGNKSNQSYPTPV-TVEKDRII 337
Query: 121 AVYEVTCGSFHTA 133
+ C S HT+
Sbjct: 338 EI--AACHSTHTS 348
>gi|242008674|ref|XP_002425127.1| hect E3 ubiquitin ligase, putative [Pediculus humanus corporis]
gi|212508801|gb|EEB12389.1| hect E3 ubiquitin ligase, putative [Pediculus humanus corporis]
Length = 1044
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 96/206 (46%), Gaps = 27/206 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF--TPSPVWDFHGHTVV 60
I + G SLA+ N G L+ WG + + G + S + P+ + G +
Sbjct: 136 HIVQISCGKNHSLALTNNGELYSWGG----NYDGQLGLGMRSEYEKQPTLIKSLLGIPIA 191
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+ACGS H AL +G Y WG N GQLGL D E++L P ++T
Sbjct: 192 FIACGSNHSFALSKSG--------AIYGWGKNTYGQLGLNDEENKLHPTQLKTLRS---I 240
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + CG +A L+ + +T G G GQLGHG+T + ++P ++ EL
Sbjct: 241 RVKYIACGEDFSAFLS--------ADGGVFTCGAGMYGQLGHGSTSNEILPRKIMELMGS 292
Query: 181 VYLVSVDCGLFHT-SVVSSAGDVWSW 205
+ V CG HT ++V S G V+S+
Sbjct: 293 T-VTQVSCGKRHTLALVPSRGRVYSF 317
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 135/299 (45%), Gaps = 48/299 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + GG +LA + G L+ WG+ DS + GF+ + P + +V++
Sbjct: 85 RITKISCGGNHTLAFNEWGQLFGWGS----DSHGQLGFNGTTQPLPKIIKSLATFHIVQI 140
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWA 121
+CG H +AL + GE YSWG N +GQLGLG R E +P +I++ P A
Sbjct: 141 SCGKNHSLALTNNGE--------LYSWGGNYDGQLGLGMRSEYEKQPTLIKSL-LGIPIA 191
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKELPQ 179
+ CGS H+ L+ +G G+N GQLG ++ L P Q+K L +
Sbjct: 192 F--IACGSNHSFALSKSGA----------IYGWGKNTYGQLGLNDEENKLHPTQLKTL-R 238
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
+ + + CG ++ +S+ G V++ G + G G N L R S +
Sbjct: 239 SIRVKYIACGEDFSAFLSADGGVFTCGAGMYGQLGHGSTSNEILPRKIMELMGSTV---- 294
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
QV+CG HT+ + +++S+G G G LGT + P +VL P
Sbjct: 295 -----------TQVSCGKRHTLALVPSRGRVYSFGLGGGGQLGTRVKTNCSTPQVVLGP 342
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 89/197 (45%), Gaps = 31/197 (15%)
Query: 87 YSWGANNNGQLGLGDRE-SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y WG+ +G+LGLG E ++ I TF S V +VT G HT +LT
Sbjct: 2 YCWGSTVHGELGLGGIEHDQIFAPIEHTFKYAS--NVSQVTMGENHTVMLTKSGE----- 54
Query: 146 ESMCWTFGLGEN--GQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVW 203
F G N QLGH ++ PE+V+ L Y + + CG HT + G ++
Sbjct: 55 -----VFSCGNNDLDQLGHKKQRTK--PEKVEGLDFY-RITKISCGGNHTLAFNEWGQLF 106
Query: 204 SWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
WG + + L N + I+ S H VQ++CG H++ +T++G
Sbjct: 107 GWGSDS------HGQLGFNGTTQPLPKIIKSLATFH------IVQISCGKNHSLALTNNG 154
Query: 264 YKLWSWGRGRSGVLGTG 280
+L+SWG G LG G
Sbjct: 155 -ELYSWGGNYDGQLGLG 170
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 110/245 (44%), Gaps = 42/245 (17%)
Query: 38 GGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQL 97
GG F P + V +V G H V L +GE +S G N+ Q
Sbjct: 15 GGIEHDQIFAPIEHTFKYASNVSQVTMGENHTVMLTKSGEV--------FSCGNNDLDQ- 65
Query: 98 GLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN 157
LG ++ R +P+ +E + + + +++CG HT N+ + W G +
Sbjct: 66 -LGHKKQRTKPEKVEGLDF---YRITKISCGGNHTLAF------NEWGQLFGW--GSDSH 113
Query: 158 GQLG-HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLC 214
GQLG +GTTQ +P+ +K L + ++V + CG H+ +++ G+++SWG + LGL
Sbjct: 114 GQLGFNGTTQP--LPKIIKSLATF-HIVQISCGKNHSLALTNNGELYSWGGNYDGQLGLG 170
Query: 215 PNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGR 273
+ + P LI P+ +ACG+ H+ ++ G ++ WG+
Sbjct: 171 MRSEYEK-------QPTLIKS------LLGIPIAFIACGSNHSFALSKSG-AIYGWGKNT 216
Query: 274 SGVLG 278
G LG
Sbjct: 217 YGQLG 221
>gi|47219890|emb|CAF97160.1| unnamed protein product [Tetraodon nigroviridis]
Length = 4588
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 132/283 (46%), Gaps = 51/283 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS------FTPSPVWDF 54
+SQ V G S I + GA+ G EG + + F P+ + F
Sbjct: 3710 LSQTQQVVCGQNCSFLIQSNGAVMAVG---------EGQYGRLGQGNSDDLFVPTIISAF 3760
Query: 55 HGHTVVKV--ACGSE-HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
G+ V ++ +CGS+ H +AL GE + SWG + G+LG G+ E + RPK I
Sbjct: 3761 QGYVVTQLVTSCGSDGHSMALTETGEVF--------SWGDGDFGKLGHGNNERQRRPKQI 3812
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
E + V ++ CG H+A++T + +TFG GE+G+LG +T + + P
Sbjct: 3813 EALQGED---VVQLACGFRHSAVVT--------ADGKLFTFGSGESGRLGQRSTSNKMQP 3861
Query: 172 EQVKELPQYVYLVSVDCGLFHTSVVSSAG-DVWSWGMEKGLGLCPNASLTRNEAGDAISP 230
E+V L Y ++ V CGL HT V+S G VW++G + G S T +
Sbjct: 3862 ERVAALEGY-HVGQVSCGLNHTLVLSLDGMAVWAFG-DGDYGKLGAGSSTAKYYPQKVEQ 3919
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGR 273
+ G +V CGA +V++ DG+ ++++G+ R
Sbjct: 3920 LCNKGMK----------KVCCGAQFSVVLATDGH-VYTFGQER 3951
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 27/205 (13%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ PK + + V+ HT +T ++
Sbjct: 394 GKGSYGRLGLGDSNNQSMPKKLVLEPHRNIKKVFSSKGSDGHTLAIT--------VDGEV 445
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G GE G+LGHG + + P+ V+ +VS G H++ V++ G++++WG
Sbjct: 446 FSWGDGEYGKLGHGNSATQKYPKIVQGPLFSKIVVSASAGYRHSAAVTNDGELYTWGEGD 505
Query: 210 GLGLCPNASLTRNEAGDAISPIL---ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L + S +RN +P L ISG G QVACG++HT+ V DG +
Sbjct: 506 FGRLGHSDSQSRN------TPTLVKDISGVG----------QVACGSSHTIAVAQDGRTM 549
Query: 267 WSWGRGRSGVLGTGKTIDFFAPAIV 291
WS+G G +G LG G T + P ++
Sbjct: 550 WSFGGGDNGKLGHGDTNRVYRPKVI 574
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 34/224 (15%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV + G H A+ + GE Y +WG + G+LG D +SR P +++ +
Sbjct: 479 VVSASAGYRHSAAVTNDGELY--------TWGEGDFGRLGHSDSQSRNTPTLVKDIS--- 527
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V +V CGS HT + R W+FG G+NG+LGHG T P+ ++ L
Sbjct: 528 --GVGQVACGSSHTIAVAQDGR-------TMWSFGGGDNGKLGHGDTNRVYRPKVIEALH 578
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
++ + V G + ++SAG V++WG LG C ++ T ++ P +
Sbjct: 579 GFI-IRKVCAGSQSSLALTSAGQVFAWGCGSCLG-CGSSETT------SLRPRFV----- 625
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+ ++CG +H + ++ + ++++WG G G G T
Sbjct: 626 EDLSITKIIDISCGDSHCLALSHEN-EVYAWGNNTMGQCGQGHT 668
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 24/204 (11%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF-HTALLTHRKRPNDMLESM 148
G G+LG G+ + P II F Q +CGS H+ LT
Sbjct: 3736 GEGQYGRLGQGNSDDLFVPTIISAF-QGYVVTQLVTSCGSDGHSMALTETGE-------- 3786
Query: 149 CWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+++G G+ G+LGHG + P+Q++ L Q +V + CG H++VV++ G ++++G
Sbjct: 3787 VFSWGDGDFGKLGHGNNERQRRPKQIEAL-QGEDVVQLACGFRHSAVVTADGKLFTFGSG 3845
Query: 209 KGLGLCPNASLTRNEAGDAISPILISG-NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLW 267
+ + L + + + P ++ G H QV+CG HT++++ DG +W
Sbjct: 3846 E------SGRLGQRSTSNKMQPERVAALEGYHVG------QVSCGLNHTLVLSLDGMAVW 3893
Query: 268 SWGRGRSGVLGTGKTIDFFAPAIV 291
++G G G LG G + + P V
Sbjct: 3894 AFGDGDYGKLGAGSSTAKYYPQKV 3917
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 23/136 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
M ++C G S+ + G ++ +G LPDS L + P V G
Sbjct: 3925 MKKVC---CGAQFSVVLATDGHVYTFGQERLIGLPDSM------LKNRSNPQVVPSLEGL 3975
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+ +A G EHV+AL S G+ Y +WG N+ GQLGLG P +I
Sbjct: 3976 FIEDIAVGCEHVLALSSTGDIY--------AWGCNSEGQLGLGHCNLVKEPTLITALQGK 4027
Query: 118 SPWAVYEVTCGSFHTA 133
+ + +++ G H++
Sbjct: 4028 N---IKQISAGRCHSS 4040
>gi|312622781|ref|YP_004024394.1| regulator of chromosome condensation rcc1 [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203248|gb|ADQ46575.1| regulator of chromosome condensation RCC1 [Caldicellulosiruptor
kronotskyensis 2002]
Length = 743
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 133/296 (44%), Gaps = 53/296 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + +V AG SLA+ G++W+WG+ ++ + FT +PV +V
Sbjct: 91 LKDVVAVSAGTFHSLALKKDGSVWIWGHTNYGQRKSD----VYRDFT-TPVKVKELKNIV 145
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G + +A+ G D ++WG NN+G+LG+G + P ++
Sbjct: 146 AIAAGWDFSLAV--------GSDGSVWAWGINNHGELGIGSLKPSAVPVKVKGLKD---- 193
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ--SALVPEQVKELP 178
V V+ G +H+ L KR + W++G E+G+LG+ T+ + VP +VK L
Sbjct: 194 -VVAVSAGLYHSLAL---KR-----DGTVWSWGYNEDGELGNRPTEDYTVSVPVRVKGLS 244
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWG---MEKGLGLCPNASLTRNEAGDAISPILISG 235
++++ G FH+ ++ G VW WG +EK G N+ + P+ I
Sbjct: 245 D---VIAISAGGFHSIALNKDGAVWIWGGGIIEKN-GKIDNSYI----------PVRIRW 290
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V +A G H++ + DDG +W WG GVLG+ F P V
Sbjct: 291 -------LNKVVAIAAGYRHSIALKDDG-TVWVWGHNSYGVLGSNVGEHSFLPVQV 338
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 91/208 (43%), Gaps = 30/208 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + S+ AG SLA+ G +W WG+ L + FS P + G VV
Sbjct: 544 IKNVRSIAAGYFHSLAVRTDGTVWSWGDTNLDNKEKYLNFSE----KPVKIKGLSG--VV 597
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
KVA G H +AL +D +SWG N GQLG G RE+ P ++ N
Sbjct: 598 KVAAGKYHSLAL--------KKDGTVWSWGYNAYGQLGNGTRETSFVPVRVKGLNN---- 645
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G +H+ L + W +G GQLG + + VP +V++L
Sbjct: 646 -VVAIAAGDYHSMALKK--------DGTVWVWGSNIRGQLGRRNIEFSTVPLKVEKLDN- 695
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+V++ G H+ + G VW WG+E
Sbjct: 696 --VVAIAAGDTHSVALKKDGTVWVWGIE 721
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 114/290 (39%), Gaps = 49/290 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTV 59
+S + ++ AGG S+A++ GA+W+WG + E + +S+ P + W + V
Sbjct: 243 LSDVIAISAGGFHSIALNKDGAVWIWGGGII-----EKNGKIDNSYIPVRIRWL---NKV 294
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +A G H +AL +D + WG N+ G LG E P ++
Sbjct: 295 VAIAAGYRHSIAL--------KDDGTVWVWGHNSYGVLGSNVGEHSFLPVQVKGLKN--- 343
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL-VPEQVKELP 178
V V G H+ LT W +G GQLG +L +P +VK L
Sbjct: 344 --VVAVAAGRLHSVALTK--------NGTIWAWGNNAFGQLGRENNSFSLNLPYKVKWLD 393
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+V++ G HT + G VWSWG L + P + G
Sbjct: 394 N---VVAIAAGGSHTLAIKRDGTVWSWGANN------KGQLGNGTYKSSYIPTCVKG--- 441
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
V V G+ H++ V DG +W WG S V T D +P
Sbjct: 442 ----LNKAVLVEAGSQHSLAVDKDG-TVWVWGFIES-VWSEKNTKDILSP 485
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 125/332 (37%), Gaps = 73/332 (21%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGG-FSLVSSFTPSPVWDFHGHTV 59
+ + +V AG + S+A+ G +W WGN E FSL + + V
Sbjct: 341 LKNVVAVAAGRLHSVALTKNGTIWAWGNNAFGQLGRENNSFSLNLPYKVKWL-----DNV 395
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ--- 116
V +A G H +A+ D +SWGANN GQLG G +S P ++ N+
Sbjct: 396 VAIAAGGSHTLAI--------KRDGTVWSWGANNKGQLGNGTYKSSYIPTCVKGLNKAVL 447
Query: 117 -----------------------DSPWAVYEVTCGSFHTALLTHRKRPNDMLE---SMCW 150
+S W+ E + L + ND+ E + +
Sbjct: 448 VEAGSQHSLAVDKDGTVWVWGFIESVWS--EKNTKDILSPLPIKIGKLNDITEIAGGLDY 505
Query: 151 TFGLGENGQL-GHG--------TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
L ++G + G G T S ++ L + S+ G FH+ V + G
Sbjct: 506 ILVLRKDGNIWGCGNDFYFRKFTDSSVSSVTKLIRLDNIKNVRSIAAGYFHSLAVRTDGT 565
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAIS--PILISGNGPHGPKFQDPVQVACGAAHTVLV 259
VWSWG + +L E S P+ I G V+VA G H++ +
Sbjct: 566 VWSWG---------DTNLDNKEKYLNFSEKPVKIKG-------LSGVVKVAAGKYHSLAL 609
Query: 260 TDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
DG +WSWG G LG G F P V
Sbjct: 610 KKDG-TVWSWGYNAYGQLGNGTRETSFVPVRV 640
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 117/296 (39%), Gaps = 52/296 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPS-PVWDFHGHTV 59
+ + +V AG SLA+ G +W WG + E G +T S PV V
Sbjct: 191 LKDVVAVSAGLYHSLALKRDGTVWSWG----YNEDGELGNRPTEDYTVSVPVRVKGLSDV 246
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGAN---NNGQLGLGDRESRLRPKIIETFNQ 116
+ ++ G H +AL +D + WG NG++ ++ P I N+
Sbjct: 247 IAISAGGFHSIAL--------NKDGAVWIWGGGIIEKNGKI-----DNSYIPVRIRWLNK 293
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V + G H+ L + W +G G LG + + +P QVK
Sbjct: 294 -----VVAIAAGYRHSIALKD--------DGTVWVWGHNSYGVLGSNVGEHSFLPVQVKG 340
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L +V+V G H+ ++ G +W+WG NA ++ S N
Sbjct: 341 LKN---VVAVAAGRLHSVALTKNGTIWAWG--------NNAFGQLGRENNSFSL-----N 384
Query: 237 GPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P+ K+ D V +A G +HT+ + DG +WSWG G LG G + P V
Sbjct: 385 LPYKVKWLDNVVAIAAGGSHTLAIKRDG-TVWSWGANNKGQLGNGTYKSSYIPTCV 439
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 119/294 (40%), Gaps = 49/294 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ S AG + +LAI + G +W WG G + S P V VV V
Sbjct: 43 KVISSGAGSLHTLAIKDDGTVWAWGYNGF---GQLGNGTYKDSCIPVRVKGLK--DVVAV 97
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G+ H +AL G + WG N GQ R+S + +
Sbjct: 98 SAGTFHSLALKKDGS--------VWIWGHTNYGQ-----RKSDVYRDFTTPVKVKELKNI 144
Query: 123 YEVTCG-SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ G F A+ + + W +G+ +G+LG G+ + + VP +VK L
Sbjct: 145 VAIAAGWDFSLAVGS---------DGSVWAWGINNHGELGIGSLKPSAVPVKVKGLKD-- 193
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGNGPH 239
+V+V GL+H+ + G VWSWG + LG P T + P+ + G
Sbjct: 194 -VVAVSAGLYHSLALKRDGTVWSWGYNEDGELGNRPTEDYTVS------VPVRVKG---- 242
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
D + ++ G H++ + DG +W WG G + GK + + P + W
Sbjct: 243 ---LSDVIAISAGGFHSIALNKDG-AVWIWGGGI--IEKNGKIDNSYIPVRIRW 290
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 122/321 (38%), Gaps = 94/321 (29%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNC--------------PLP------DSSTE--G 38
+++ V+AG SLA+D G +W+WG PLP + TE G
Sbjct: 442 LNKAVLVEAGSQHSLAVDKDGTVWVWGFIESVWSEKNTKDILSPLPIKIGKLNDITEIAG 501
Query: 39 GFSLV------------------SSFTPSPVWDF-------HGHTVVKVACGSEHVVALV 73
G + FT S V + V +A G H +A+
Sbjct: 502 GLDYILVLRKDGNIWGCGNDFYFRKFTDSSVSSVTKLIRLDNIKNVRSIAAGYFHSLAVR 561
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRL----RPKIIETFNQDSPWAVYEVTCGS 129
+ G +SWG N L ++E L +P I+ + V +V G
Sbjct: 562 TDG--------TVWSWGDTN-----LDNKEKYLNFSEKPVKIKGLS-----GVVKVAAGK 603
Query: 130 FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCG 189
+H+ L + W++G GQLG+GT +++ VP +VK L +V++ G
Sbjct: 604 YHSLALKK--------DGTVWSWGYNAYGQLGNGTRETSFVPVRVKGLNN---VVAIAAG 652
Query: 190 LFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV 249
+H+ + G VW WG L R + P+ + K + V +
Sbjct: 653 DYHSMALKKDGTVWVWGSN------IRGQLGRRNIEFSTVPLKV-------EKLDNVVAI 699
Query: 250 ACGAAHTVLVTDDGYKLWSWG 270
A G H+V + DG +W WG
Sbjct: 700 AAGDTHSVALKKDG-TVWVWG 719
>gi|431911480|gb|ELK13686.1| Putative E3 ubiquitin-protein ligase HERC5 [Pteropus alecto]
Length = 923
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 94/204 (46%), Gaps = 23/204 (11%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G SLA+ G L+ WG F S+ P V G + +++
Sbjct: 38 IIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGKIFD--STTAPQIVEHLSGVPLAQIS 95
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G H +AL +G YSWG N+ GQLGLG + + P +IE V
Sbjct: 96 AGKSHSMALSVSGNI--------YSWGRNDFGQLGLGHTDDKDFPSLIEALENQK---VE 144
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
+ CG HTALLT + + +TFG G+ GQLGH +TQ+ L P V +L +
Sbjct: 145 FLACGGSHTALLTK--------DGLVFTFGAGKYGQLGHNSTQNELRPCLVTKLAGN-RV 195
Query: 184 VSVDCGLFHT-SVVSSAGDVWSWG 206
V CG HT + VS G V+S+G
Sbjct: 196 TQVACGRQHTLAYVSDLGKVFSFG 219
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 116/249 (46%), Gaps = 41/249 (16%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRLRPKIIETFNQ 116
++++ CG H +AL GE ++WG N +GQLG+G +S P+I+E +
Sbjct: 37 NIIQITCGDYHSLALSKGGE--------LFAWGQNLHGQLGVGKIFDSTTAPQIVEHLS- 87
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
P A +++ G H+ L+ + +++G + GQLG G T P ++
Sbjct: 88 GVPLA--QISAGKSHSMALS--------VSGNIYSWGRNDFGQLGLGHTDDKDFPSLIEA 137
Query: 177 LP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS- 234
L Q V ++ CG HT++++ G V+++G K L N + + P L++
Sbjct: 138 LENQKVEFLA--CGGSHTALLTKDGLVFTFGAGK------YGQLGHNSTQNELRPCLVTK 189
Query: 235 --GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
GN QVACG HT+ D K++S+G G G LG G T + P + +
Sbjct: 190 LAGN--------RVTQVACGRQHTLAYVSDLGKVFSFGSGEEGQLGNGGTHNQLIP-LPM 240
Query: 293 WPPLTEEFK 301
P EE K
Sbjct: 241 KLPSNEELK 249
>gi|383456202|ref|YP_005370191.1| RCC1 repeat-containing protein [Corallococcus coralloides DSM 2259]
gi|380729703|gb|AFE05705.1| RCC1 repeat-containing protein [Corallococcus coralloides DSM 2259]
Length = 806
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 127/291 (43%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ +G SLA+ G +W WG L + G + VS PV V
Sbjct: 542 LTGVTALASGTYHSLALKQDGTVWAWG---LNNLGQLGDGTTVSRTEQMPVPGLT--DVT 596
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A + H +AL +D ++WG N++GQLG G SRL P +
Sbjct: 597 ALAASTYHSLALK--------QDGTVWTWGYNSSGQLGDGTTASRLTPAQVPGLT----- 643
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G H+ L + W +G +GQLG+G ++ VP QV+ L
Sbjct: 644 GVSAIAAGLVHSLALKQ--------DGTVWAWGRNTDGQLGNGAAVNSPVPVQVQGL--- 692
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ ++ G +H+ + G WSWG G G N ++T +++P+ + G
Sbjct: 693 TGVSAIAAGSYHSLALKQDGTAWSWG-RNGTGQLGNETIT-----GSLTPVQVQG----- 741
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A G AH++ + DG +W+WG G LG G T+D AP V
Sbjct: 742 --LTAVTALAGGDAHSMALLRDG-TVWTWGYNAEGELGDGTTLDRTAPVRV 789
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 119/291 (40%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ ++ A +LA+ G +W WG DS G + TP+P+ G V
Sbjct: 492 LTGATALSATAYHTLALAQDGTVWGWG---YNDSGQLGDTVDMVRVTPAPLPGLTG--VT 546
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G+ H +AL +D ++WG NN GQLG G SR +
Sbjct: 547 ALASGTYHSLALK--------QDGTVWAWGLNNLGQLGDGTTVSRTEQMPVPGLTD---- 594
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + ++H+ L + WT+G +GQLG GTT S L P QV P
Sbjct: 595 -VTALAASTYHSLALKQ--------DGTVWTWGYNSSGQLGDGTTASRLTPAQV---PGL 642
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ ++ GL H+ + G VW+WG + L A ++ P+ + G
Sbjct: 643 TGVSAIAAGLVHSLALKQDGTVWAWGRNT------DGQLGNGAAVNSPVPVQVQG----- 691
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A G+ H++ + DG WSWGR +G LG P V
Sbjct: 692 --LTGVSAIAAGSYHSLALKQDGTA-WSWGRNGTGQLGNETITGSLTPVQV 739
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 86/216 (39%), Gaps = 30/216 (13%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
+D +WG N GQLG G R P ++ A+ ++HT L
Sbjct: 458 QDGTADAWGHNGYGQLGDGTSVDRFLPGPVQVQGLTGATALSAT---AYHTLALAQ---- 510
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ W +G ++GQLG + P LP + ++ G +H+ + G
Sbjct: 511 ----DGTVWGWGYNDSGQLGDTVDMVRVTP---APLPGLTGVTALASGTYHSLALKQDGT 563
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
VW+WG+ L +++R E P+ P D +A H++ +
Sbjct: 564 VWAWGLNNLGQLGDGTTVSRTEQ----MPV---------PGLTDVTALAASTYHSLALKQ 610
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
DG +W+WG SG LG G T PA V P LT
Sbjct: 611 DG-TVWTWGYNSSGQLGDGTTASRLTPAQV--PGLT 643
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 77/180 (42%), Gaps = 32/180 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF---SLVSSFTPSPVWDFHGH 57
++ + ++ AG + SLA+ G +W WG +T+G + V+S P V G
Sbjct: 642 LTGVSAIAAGLVHSLALKQDGTVWAWGR------NTDGQLGNGAAVNSPVPVQVQGLTG- 694
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V +A GS H +AL +D +SWG N GQLG L P ++
Sbjct: 695 -VSAIAAGSYHSLALK--------QDGTAWSWGRNGTGQLGNETITGSLTPVQVQGLT-- 743
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
AV + G H+ L + + WT+G G+LG GTT P +V+ L
Sbjct: 744 ---AVTALAGGDAHSMAL--------LRDGTVWTWGYNAEGELGDGTTLDRTAPVRVQGL 792
>gi|344284757|ref|XP_003414131.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Loxodonta
africana]
Length = 1050
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIVHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG + S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +VT G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVTAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKNGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 116/278 (41%), Gaps = 66/278 (23%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IVHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG AS R + + I
Sbjct: 134 LNQQT-ILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192
Query: 231 ILISGNGPH-------GPKF-----------------------------QDPVQVACGAA 254
++ G H G F Q V ++CG
Sbjct: 193 AQVTAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEE 252
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
HT ++T +G ++++G G G LG D P VL
Sbjct: 253 HTAVLTKNG-GVFTFGAGSCGQLGHDSMNDEVNPRRVL 289
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVTAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKNGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|327286813|ref|XP_003228124.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
ligase HERC1-like [Anolis carolinensis]
Length = 4963
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 126/283 (44%), Gaps = 38/283 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 459 IKKVSSSKGSDGHTLAFTTEGEVFSWGDG---DYGKLGHGNSSTQKYPKLIQGPLQGKVV 515
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 516 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 564
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 565 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 614
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 615 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 666
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
V ++ G +H + ++ D ++++WG G G G +
Sbjct: 667 ----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNS 704
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 126/280 (45%), Gaps = 38/280 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4185 SMALTESGEVFSWGDG---DYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4241
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ + ++G + G+LGLG+ ++ P+ + + + EV CG HT
Sbjct: 4242 ADGKLF--------TFGNGDYGRLGLGNTSNKKLPERVAALEG---YQIGEVACGLNHTL 4290
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
+++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4291 VVSTDG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDILCG-IGIKKVACGTQFS 4342
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD--AISPILISGNGPHGPKFQDPVQVAC 251
++ G V+++G ++ +GL + N A+S + + +A
Sbjct: 4343 VALTKDGHVYTFGQDRLIGLPEGRARNHNRPQQVPALSGVFVE-------------DIAV 4389
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
GA HT+ ++ G +++WG G LG G T P +V
Sbjct: 4390 GAEHTLALSASG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4428
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 430 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 481
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 482 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 541
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 542 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 588
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 589 GGGDNGKLGHGDTNRVYKPKVI 610
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P V G V
Sbjct: 4332 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQVPALSGVFVE 4385
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G+EH +AL ++G+ Y +WG+N+ GQLGLG P ++ + S
Sbjct: 4386 DIAVGAEHTLALSASGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTSLQGKS-- 4435
Query: 121 AVYEVTCGSFHTA 133
V +++ G H+A
Sbjct: 4436 -VRQISAGRCHSA 4447
>gi|348542108|ref|XP_003458528.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Oreochromis
niloticus]
Length = 4936
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 118/453 (26%), Positives = 184/453 (40%), Gaps = 89/453 (19%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLP-----DSSTEGGFSLVSSFTPSPVWDFH 55
+ ++ S K +LA G ++ WG+ +SST+ L+
Sbjct: 464 IKKVSSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQG-------PLQ 516
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G VV V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 517 GKVVVCVSAGYRHSAAVSEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDIS 568
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ V+
Sbjct: 569 N-----VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVVE 616
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q +++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 617 AL-QGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEE 668
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
V ++ G +H + ++ D ++++WG G G G + P
Sbjct: 669 LAT-----TRVVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------P 712
Query: 296 LTEEFKQDELNTGGLDDEIKTKDLEG--------AEERDEKLSS-------AMEEMKLLQ 340
+T+ K GLD + G A RD ++ + +EE
Sbjct: 713 ITKPKK-----VIGLDGVAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSH 767
Query: 341 SKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRS 394
+ S +ERY ++ + PF P S + F + + N L A S
Sbjct: 768 LR-SFLERYCDGINSEVPPLPF------PSSREHHNFLKLCLRLLSNHLALALAGGVATS 820
Query: 395 KLVRLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
L R R RN+L + D + IQE V E L
Sbjct: 821 ILGRQARPLRNLLFRLMDSSVPDEIQEAVIETL 853
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4169 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4225
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ + ++G + G+LGLG+ ++ P+ + + V +V CG HT
Sbjct: 4226 ADGKLF--------TFGNGDYGRLGLGNTSNKKLPEKVTALEG---YHVGQVACGLNHTL 4274
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
+++ + M M W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4275 VVS----ADGM---MVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4326
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL + N G G QD VA GA
Sbjct: 4327 VALTKDGKVFTFGQDRLIGLPEGRARNHNRPQQV--------PGLSGIHIQD---VAVGA 4375
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT++++ G +++WG G LG G T P +V
Sbjct: 4376 EHTLVLSSTG-DVYTWGSNSEGQLGLGHTNHVREPTLV 4412
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 96/203 (47%), Gaps = 23/203 (11%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF-HTALLTHRKRPNDMLESM 148
G + G+LGLGD ++ K + TF + GS HT T E
Sbjct: 435 GKGSYGRLGLGDSNNQSTLKKL-TFEPHRAIKKVSSSKGSDGHTLAFT--------TEGE 485
Query: 149 CWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ VS G++++WG E
Sbjct: 486 VFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVSEDGELYTWG-E 544
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
G L ++ P L+ G +V+CG++HT+ ++ DG +WS
Sbjct: 545 GDFG-----RLGHGDSNSRNIPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWS 592
Query: 269 WGRGRSGVLGTGKTIDFFAPAIV 291
+G G +G LG G T + P +V
Sbjct: 593 FGGGDNGKLGHGDTNRVYKPKVV 615
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 24/213 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + G S + G L+ +GN D G + + P V G+ V +V
Sbjct: 4210 EVVQMSCGFKHSAVVTADGKLFTFGN---GDYGRLGLGNTSNKKLPEKVTALEGYHVGQV 4266
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG H + + + G ++ +++G + G+LGLG+ ++ P+ ++ +
Sbjct: 4267 ACGLNHTLVVSADG-------MMVWAFGDGDYGKLGLGNSTAKSSPQKVDVL---CGIGI 4316
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CG+ + LT + +TFG L G ++ P+QV L ++
Sbjct: 4317 KKVACGTQFSVALTK--------DGKVFTFGQDRLIGLPEGRARNHNRPQQVPGL-SGIH 4367
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGL 213
+ V G HT V+SS GDV++WG E LGL
Sbjct: 4368 IQDVAVGAEHTLVLSSTGDVYTWGSNSEGQLGL 4400
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 20/141 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P V G +
Sbjct: 4316 IKKVACGTQFSVALTKDGKVFTFGQDRLIGLPEGRAR------NHNRPQQVPGLSGIHIQ 4369
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH + L S G+ Y +WG+N+ GQLGLG P ++ T +
Sbjct: 4370 DVAVGAEHTLVLSSTGDVY--------TWGSNSEGQLGLGHTNHVREPTLVTTLQGKN-- 4419
Query: 121 AVYEVTCGSFHTALLTHRKRP 141
+++++ G H+A T P
Sbjct: 4420 -IHQISAGRCHSAAWTAPSVP 4439
>gi|345323388|ref|XP_001508293.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC4
[Ornithorhynchus anatinus]
Length = 1006
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 105/249 (42%), Gaps = 32/249 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ ++ WG GF +P + G +++
Sbjct: 87 QIVQVSCGYYHSLALSKGSEVFSWGQNKYGQLGL--GFEFKKQTSPQLIKSLLGIPFMQI 144
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 145 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 194
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 195 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 244
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN-GPHG 240
+ V CG HTS V S+G ++S+ GL N L + SP + GN P+
Sbjct: 245 VTQVACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGNWFPYS 298
Query: 241 PKFQDPVQV 249
QDP +
Sbjct: 299 E--QDPSNI 305
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 138/317 (43%), Gaps = 55/317 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG T+G L + P + +
Sbjct: 35 IVAVSCGDAHTLALNDKGQVYAWG------LDTDGQLGLPGTEECIRVPRNIKSLSDIQI 88
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+V+CG H +AL E + SWG N GQLGLG + + + P++I++
Sbjct: 89 VQVSCGYYHSLALSKGSEVF--------SWGQNKYGQLGLGFEFKKQTSPQLIKSL-LGI 139
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ ++ G H+ +LT L + +G + GQLG VP +K L
Sbjct: 140 PFM--QIAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 188
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 189 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 237
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL-- 292
F+ QVACG HT +++S+G G +G LGTG T + +P V
Sbjct: 238 ----FELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGN 293
Query: 293 WPPLTEEFKQDELNTGG 309
W P +E QD N G
Sbjct: 294 WFPYSE---QDPSNIDG 307
>gi|340502171|gb|EGR28884.1| hypothetical protein IMG5_167380 [Ichthyophthirius multifiliis]
Length = 267
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 101/196 (51%), Gaps = 29/196 (14%)
Query: 87 YSWGANNNGQLGL-GDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
+SWG+ G+LG D + + PKIIETF+ + V ++ G+ H+A T++ +
Sbjct: 80 FSWGSGEFGRLGYEKDVKYQKYPKIIETFSIQNI-IVTKIALGTHHSAACTNQGK----- 133
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSW 205
+T+G G NGQLGHG+ Q+ +P++VKE Q + ++ + CG HT + S V+ W
Sbjct: 134 ---LYTWGQGVNGQLGHGSNQNEEIPKKVKEF-QDIRVLEIACGDSHTMAIISGNLVYGW 189
Query: 206 GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF---QDPVQVACGAAHTVLVTDD 262
G N+AG L N P F ++ VQ+ CG H++ +T +
Sbjct: 190 GF--------------NQAGQLGFQDLSRVNLPKKIMFFNQKEVVQIQCGKKHSIALTVE 235
Query: 263 GYKLWSWGRGRSGVLG 278
G +++SWG G LG
Sbjct: 236 G-QVYSWGSNEYGQLG 250
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT-PSPVWDFHGHTVVK 61
++ + G ++AI + ++ WG + + + GF +S P + F+ VV+
Sbjct: 166 RVLEIACGDSHTMAIISGNLVYGWG----FNQAGQLGFQDLSRVNLPKKIMFFNQKEVVQ 221
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL 99
+ CG +H +AL G+ YSWG+N GQLG+
Sbjct: 222 IQCGKKHSIALTVEGQV--------YSWGSNEYGQLGI 251
>gi|255549098|ref|XP_002515604.1| Williams-Beuren syndrome chromosome region 16 protein, putative
[Ricinus communis]
gi|223545242|gb|EEF46749.1| Williams-Beuren syndrome chromosome region 16 protein, putative
[Ricinus communis]
Length = 374
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 136/304 (44%), Gaps = 52/304 (17%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHG--HTVVKVA 63
S+ GG +L + G ++ G L D + G S S+T PV G +++++
Sbjct: 60 SIACGGAHTLFLTETGCVYATG---LNDFG-QLGISGNLSYTTEPV-KVSGLQKEIMQIS 114
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL--RPKIIETFNQDSPWA 121
G H A+ GE Y WG N+NGQLGLG + R+ P +E N +
Sbjct: 115 AGYHHSCAITVDGELYM--------WGRNSNGQLGLGKKAQRIVPLPTKVEYLNGLT--- 163
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG---------TTQSALVPE 172
+ V GS H+ +T R E++ W GLG G+LGH T+ S P
Sbjct: 164 IKLVALGSEHSIAVTDRG------EALSW--GLGGFGRLGHSNQSGTFRFWTSTSEYTPR 215
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
+K+L + V + SV GL H++ + G V+ +G S+ R G+AI +
Sbjct: 216 SIKKLEE-VKVKSVAAGLLHSACIDVNGSVFVFG---------EVSVDRTGFGEAIGAEI 265
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
S G K +V+CG HT +VT G +L++WG +G LG G AP V
Sbjct: 266 PSMVG----KLPCANEVSCGGYHTCVVTSGG-ELYAWGVNENGCLGIGSFNSLHAPERVQ 320
Query: 293 WPPL 296
P L
Sbjct: 321 GPFL 324
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 105/261 (40%), Gaps = 49/261 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHTV 59
+I + AG S AI G L+MWG +S+ + G + P+ V +G T+
Sbjct: 109 EIMQISAGYHHSCAITVDGELYMWGR----NSNGQLGLGKKAQRIVPLPTKVEYLNGLTI 164
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR---------PKI 110
VA GSEH +A+ GE SWG G+LG ++ R P+
Sbjct: 165 KLVALGSEHSIAVTDRGEA--------LSWGLGGFGRLGHSNQSGTFRFWTSTSEYTPRS 216
Query: 111 IETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALV 170
I+ + V V G H+A + + + FG + G G A +
Sbjct: 217 IKKLEEVK---VKSVAAGLLHSACID--------VNGSVFVFGEVSVDRTGFGEAIGAEI 265
Query: 171 PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP 230
P V +LP V CG +HT VV+S G++++WG+ + N L +P
Sbjct: 266 PSMVGKLP---CANEVSCGGYHTCVVTSGGELYAWGVNE------NGCLGIGSFNSLHAP 316
Query: 231 ILISGNGPHGPKFQDPVQVAC 251
+ GP + PV+ C
Sbjct: 317 ERV-----QGPFLRSPVEKVC 332
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 85/194 (43%), Gaps = 28/194 (14%)
Query: 89 WGANNNGQLGLGDRESRLRPKII--ETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + G+LG G +S+ RPK++ F S + + CG HT LT E
Sbjct: 26 WGNGDFGRLGTGSLDSQWRPKLLLSSCFANHS---LKSIACGGAHTLFLT---------E 73
Query: 147 SMC-WTFGLGENGQLG-HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+ C + GL + GQLG G P +V L + + +S G H+ ++ G+++
Sbjct: 74 TGCVYATGLNDFGQLGISGNLSYTTEPVKVSGLQKEIMQISA--GYHHSCAITVDGELYM 131
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG N L + I P+ +G + VA G+ H++ VTD G
Sbjct: 132 WGRNS------NGQLGLGKKAQRIVPLPTKVEYLNGLTIK---LVALGSEHSIAVTDRGE 182
Query: 265 KLWSWGRGRSGVLG 278
L SWG G G LG
Sbjct: 183 AL-SWGLGGFGRLG 195
>gi|224099911|ref|XP_002311672.1| predicted protein [Populus trichocarpa]
gi|222851492|gb|EEE89039.1| predicted protein [Populus trichocarpa]
Length = 1109
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 138/306 (45%), Gaps = 52/306 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF----SLVSSFTPSPVW-DFH 55
++ I V G + AI +G L+ WG D S G + VS + P V
Sbjct: 316 VTNIDYVACGEYHTCAISTSGDLFTWG-----DGSNNSGLLGHGTDVSHWIPKRVSGPLE 370
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G V+ +ACG+ H S G+ +++G G LG GDR+S PK +++ N
Sbjct: 371 GLQVLSIACGTWHSALATSNGK--------LFTFGDGTFGALGHGDRKSVSSPKELQSLN 422
Query: 116 QDSPWAVYEVTCGSFHTALLTH--RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
+V CG +HTA + + +++ +T+G G+ +LGHG + L+P
Sbjct: 423 G---LKTIKVACGVWHTAAIVEVMSQSGSNISSRKLFTWGDGDKHRLGHGNKDAYLLPTC 479
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPI 231
V L Y + + CG T ++++G V++ G LG N + + P
Sbjct: 480 VSSLIDYNFQ-QLACGHTMTVALTTSGHVFTMGGSAYGQLG---------NPSSNGKIPC 529
Query: 232 LISGNGPHGPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
L+ QD + +++CGA HT ++T ++++WGRG +G LG G T D
Sbjct: 530 LV----------QDRLVGEFVEEISCGAYHTAVLTSRS-EVFTWGRGANGQLGHGDTEDR 578
Query: 286 FAPAIV 291
P +V
Sbjct: 579 KLPTLV 584
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 127/289 (43%), Gaps = 43/289 (14%)
Query: 17 IDNAGALWMWGNC----PLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVAL 72
I++ G +++WG PD S + TP P+ V +++CG HV +
Sbjct: 221 IESLGDVYIWGEIWSDGVFPDGSVSSVPTKNDVLTPKPLESNVVLDVHQISCGVRHVALV 280
Query: 73 VSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHT 132
GE + +WG + G+LG G + PK++E+ + + V CG +HT
Sbjct: 281 TRQGEVF--------TWGEESGGRLGHGIEDHFTHPKLVESLAVTN---IDYVACGEYHT 329
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFH 192
++ D+ W G +G LGHGT S +P++V + + ++S+ CG +H
Sbjct: 330 CAISTS---GDLF---TWGDGSNNSGLLGHGTDVSHWIPKRVSGPLEGLQVLSIACGTWH 383
Query: 193 TSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPI-LISGNGPHGPKFQDPVQVAC 251
+++ +S G ++++G + G +L + SP L S NG ++VAC
Sbjct: 384 SALATSNGKLFTFG-DGTFG-----ALGHGDRKSVSSPKELQSLNG------LKTIKVAC 431
Query: 252 GAAHTVLVTD---------DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G HT + + KL++WG G LG G + P V
Sbjct: 432 GVWHTAAIVEVMSQSGSNISSRKLFTWGDGDKHRLGHGNKDAYLLPTCV 480
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 31/178 (17%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
L+ WG+ D G + + P+ V + ++ACG VAL ++G +
Sbjct: 455 LFTWGDG---DKHRLGHGNKDAYLLPTCVSSLIDYNFQQLACGHTMTVALTTSGHVF--- 508
Query: 83 DLVCYSWGANNNGQLGLGDRESRL----RPKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
+ G + GQLG ++ + +++ F V E++CG++HTA+LT R
Sbjct: 509 -----TMGGSAYGQLGNPSSNGKIPCLVQDRLVGEF-------VEEISCGAYHTAVLTSR 556
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
S +T+G G NGQLGHG T+ +P V+ L + ++ ++ CG TS +
Sbjct: 557 --------SEVFTWGRGANGQLGHGDTEDRKLPTLVEALKER-HVKNLSCGANFTSSI 605
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 23/134 (17%)
Query: 10 GGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWD-FHGHTVVKVACG 65
G M++A+ +G ++ G L + S+ G P V D G V +++CG
Sbjct: 494 GHTMTVALTTSGHVFTMGGSAYGQLGNPSSNGKI-------PCLVQDRLVGEFVEEISCG 546
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
+ H L S E + +WG NGQLG GD E R P ++E + V +
Sbjct: 547 AYHTAVLTSRSEVF--------TWGRGANGQLGHGDTEDRKLPTLVEALKERH---VKNL 595
Query: 126 TCGS-FHTALLTHR 138
+CG+ F +++ H+
Sbjct: 596 SCGANFTSSICIHK 609
>gi|348529614|ref|XP_003452308.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Oreochromis
niloticus]
Length = 1004
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 105/241 (43%), Gaps = 37/241 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL----VSSFTPSPVWDFHGHT 58
+I V G +A+ G L+ WG +T G L S P P+ G
Sbjct: 137 RISQVMCGNQHCVALSRDGQLFTWGQ------NTSGQLGLGKGEPSKLFPHPLKSLAGIP 190
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ ++ G +H AL +G + WG N GQLGL D++ R P I+
Sbjct: 191 LAQITAGGDHSFALSLSG--------AVFGWGKNRAGQLGLNDKQDRAVPCHIKFLRSQK 242
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V ++CG HTA LT + +TFG G GQLGHG+T S L+P +V EL
Sbjct: 243 ---VVYISCGDEHTAALTK--------DGGLFTFGDGSWGQLGHGSTNSELLPRRVLEL- 290
Query: 179 QYVYLVSVDCGLFHT-SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ + CG HT + V S+G V+++G + L GDA SP + +
Sbjct: 291 MGTEVSQIACGRHHTLAFVPSSGVVYAFGCNS------HGQLGTGILGDARSPFPVKTSV 344
Query: 238 P 238
P
Sbjct: 345 P 345
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 132/309 (42%), Gaps = 52/309 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTVVK 61
+I V G S+A++ G L+ WG D G G + + P V H + +
Sbjct: 84 KITMVSCGRGHSMAVNEQGQLFAWGA---GDGGQLGLGTTETTVRIPRLVKRLCDHRISQ 140
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE-SRLRPKIIETFNQDSPW 120
V CG++H VAL G+ ++WG N +GQLGLG E S+L P +++ P
Sbjct: 141 VMCGNQHCVALSRDGQ--------LFTWGQNTSGQLGLGKGEPSKLFPHPLKSL-AGIPL 191
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
A ++T G H+ L+ L + +G GQLG Q VP +K L +
Sbjct: 192 A--QITAGGDHSFALS--------LSGAVFGWGKNRAGQLGLNDKQDRAVPCHIKFL-RS 240
Query: 181 VYLVSVDCGLFHTSVVSSAGDVW-----SWGMEKGLGLCPNASLTRNE---AGDAISPIL 232
+V + CG HT+ ++ G ++ SWG + G G + L R G +S
Sbjct: 241 QKVVYISCGDEHTAALTKDGGLFTFGDGSWG-QLGHGSTNSELLPRRVLELMGTEVS--- 296
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
Q+ACG HT+ ++++G G LGTG D +P V
Sbjct: 297 ---------------QIACGRHHTLAFVPSSGVVYAFGCNSHGQLGTGILGDARSPFPVK 341
Query: 293 WPPLTEEFK 301
+E+F+
Sbjct: 342 TSVPSEDFR 350
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 121/314 (38%), Gaps = 76/314 (24%)
Query: 26 WGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETY------ 79
WGN D G F P F G + +V CG +H V L+ G Y
Sbjct: 4 WGNAK--DGQLGIGVEKNPVFEPRNCHVFSGRGLKEVGCGGQHSVFLMHDGSVYTCGSNS 61
Query: 80 ------------------------------KGEDLVC------YSWGANNNGQLGLGDRE 103
+G + ++WGA + GQLGLG E
Sbjct: 62 CGQLGHDKAGISPEVVGALDTQKITMVSCGRGHSMAVNEQGQLFAWGAGDGGQLGLGTTE 121
Query: 104 SRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
+ +R P++++ + +V CG+ H L+ + +T+G +GQLG
Sbjct: 122 TTVRIPRLVKRLCDHR---ISQVMCGNQHCVALSR--------DGQLFTWGQNTSGQLGL 170
Query: 163 GTTQ-SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTR 221
G + S L P +K L + L + G H+ +S +G V+ WG + L
Sbjct: 171 GKGEPSKLFPHPLKSLAG-IPLAQITAGGDHSFALSLSGAVFGWGKNRA------GQLGL 223
Query: 222 NEAGDAISPILISGNGPHGPKF---QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
N+ D P I KF Q V ++CG HT +T DG L+++G G G LG
Sbjct: 224 NDKQDRAVPCHI--------KFLRSQKVVYISCGDEHTAALTKDG-GLFTFGDGSWGQLG 274
Query: 279 TGKTIDFFAPAIVL 292
G T P VL
Sbjct: 275 HGSTNSELLPRRVL 288
>gi|345795744|ref|XP_535653.3| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Canis lupus
familiaris]
Length = 1050
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIVHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG + S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEYPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEEDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGAKGQLGTGHTCNVKCPSPV 341
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 108/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IVHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG AS R + + I P
Sbjct: 134 LNQQT-ILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEYPSQASPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEEDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEEDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGAKGQLGTGHTCNVKCPSPVK 342
>gi|432092257|gb|ELK24881.1| Putative E3 ubiquitin-protein ligase HERC1 [Myotis davidii]
Length = 4856
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 183/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLSLTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V ++ G +H + ++ D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQVSAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHSFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 126/284 (44%), Gaps = 37/284 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4080 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4136
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF------NQDSPWAVYEVTC 127
S G+ + ++G + G+LGLG+ ++ P+ + + + V C
Sbjct: 4137 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQARNKSIICSVAC 4188
Query: 128 GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVD 187
G HT ++ SM W FG G+ G+LG G + + P++V L + + V
Sbjct: 4189 GLNHTLAVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVA 4240
Query: 188 CGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV 247
CG + ++ G V+++G ++ +GL P RN P+L G +D
Sbjct: 4241 CGTQFSVALTKDGQVYTFGQDRLIGL-PEGR-ARNHNRPQQVPVLA------GVVIED-- 4290
Query: 248 QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
VA GA HT+ +T G +++WG G LG G T P +V
Sbjct: 4291 -VAVGAEHTLALTSTG-DIYAWGSNSEGQLGLGHTNHVREPTLV 4332
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P V G +
Sbjct: 4236 IKKVACGTQFSVALTKDGQVYTFGQDRLIGLPEGRAR------NHNRPQQVPVLAGVVIE 4289
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4290 DVAVGAEHTLALTSTGDIY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4339
Query: 121 AVYEVTCGSFHTA 133
V +++ G H+A
Sbjct: 4340 -VRQISAGRCHSA 4351
>gi|326926479|ref|XP_003209427.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like
[Meleagris gallopavo]
Length = 4334
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 128/287 (44%), Gaps = 46/287 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLP-----DSSTEGGFSLVSSFTPSPVWDFH 55
+ ++ S K +LA G ++ WG+ +SST+ L+
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQG-------PLQ 509
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G VV V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 510 GKVVVCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDIS 561
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ ++
Sbjct: 562 N-----VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVIE 609
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L Q +++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 610 AL-QGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEE 661
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
V ++ G +H + ++ D ++++WG G G G +
Sbjct: 662 LAA-----TRIVDISIGDSHCLALSHDN-EVYAWGNNSMGQCGQGNS 702
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 123/250 (49%), Gaps = 40/250 (16%)
Query: 58 TVVKVACGSE-HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
T + +CGS+ H +AL +GE + SWG + G+LG G+ + + RP+ IE
Sbjct: 3555 TQLVTSCGSDGHSMALTESGEVF--------SWGDGDYGKLGHGNSDRQRRPRQIEALQG 3606
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ V +++CG H+A++T + +TFG G+ G+LG G T + +PE+V
Sbjct: 3607 EE---VVQMSCGFKHSAVVT--------ADGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 3655
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGD-VWSWGMEK--GLGLCPNASLTRNEAGDAISPILI 233
L Y + V CGL HT VS G VW++G LGL + + + + D + I I
Sbjct: 3656 LEGY-QIGQVACGLNHTVAVSMDGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDILCGIGI 3714
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
+VACG +V +T DG+ ++++G+ R L G+ + P V
Sbjct: 3715 K-------------KVACGTQFSVALTKDGH-VYTFGQDRLIGLPEGRARNHNRPQQV-- 3758
Query: 294 PPLTEEFKQD 303
P L+ F +D
Sbjct: 3759 PVLSGVFIED 3768
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 128/278 (46%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 3567 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 3623
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 3624 ADGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTV 3672
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ M SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 3673 AVS-------MDGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDILCG-IGIKKVACGTQFS 3724
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D +A GA
Sbjct: 3725 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQVPVL------SGVFIED---IAVGA 3773
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ ++ G +++WG G LG G T P ++
Sbjct: 3774 EHTLALSSTG-DVYAWGSNSEGQLGLGHTNHVREPTLI 3810
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P ++
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVI 608
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 24/213 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + G S + G L+ +GN D G + + P V G+ + +V
Sbjct: 3608 EVVQMSCGFKHSAVVTADGKLFTFGN---GDYGRLGLGNTSNKKLPERVTALEGYQIGQV 3664
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG H VA+ G + +++G + G+LGLG+ ++ P+ ++ +
Sbjct: 3665 ACGLNHTVAVSMDGS-------MVWAFGDGDYGKLGLGNSTAKSSPQKVDIL---CGIGI 3714
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CG+ + LT + +TFG L G ++ P+QV L V+
Sbjct: 3715 KKVACGTQFSVALTK--------DGHVYTFGQDRLIGLPEGRARNHNRPQQVPVLSG-VF 3765
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGL 213
+ + G HT +SS GDV++WG E LGL
Sbjct: 3766 IEDIAVGAEHTLALSSTGDVYAWGSNSEGQLGL 3798
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P V G +
Sbjct: 3714 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQVPVLSGVFIE 3767
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G+EH +AL S G+ Y +WG+N+ GQLGLG P +I +
Sbjct: 3768 DIAVGAEHTLALSSTGDVY--------AWGSNSEGQLGLGHTNHVREPTLITVLQGKN-- 3817
Query: 121 AVYEVTCGSFHTA 133
+ +++ G H+A
Sbjct: 3818 -IRQISAGRCHSA 3829
>gi|27923073|gb|AAO27475.1| HERC2 [Homo sapiens]
Length = 328
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 123/265 (46%), Gaps = 33/265 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG + A+ G ++ WG D G FS ++ P + + +ACG
Sbjct: 89 AVHSGGRHATALTVDGKVFWWGE---GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACG 145
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H AL S+GE Y +WG G+LG GD ++L+PK+++ V +V
Sbjct: 146 SSHSAALTSSGELY--------TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHR---VIQV 194
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CGS L E + +++G G+ G+LG G ++ +P+ ++ L +
Sbjct: 195 ACGSRDAQTLALTD------EGLVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ-GVCQ 247
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
++CG + ++ +G VW+WG L + + + P ++ G G K
Sbjct: 248 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK------PQVV--EGLRGKKI-- 297
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWG 270
V VA GA H + VTD G ++++WG
Sbjct: 298 -VHVAVGALHCLAVTDSG-QVYAWG 320
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 116/263 (44%), Gaps = 46/263 (17%)
Query: 39 GFSLVSSFTPSP--VWDFHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNN 94
G + S P P + + V KVA G H AL G+ + WG ++
Sbjct: 63 GLGISSGTVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVF--------WWGEGDD 114
Query: 95 GQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGL 154
G+LG R + +P++IE + ++ CGS H+A LT +T+GL
Sbjct: 115 GKLGHFSRMNCDKPRLIEALKTKR---IRDIACGSSHSAALTS--------SGELYTWGL 163
Query: 155 GENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSWG----ME 208
GE G+LGHG + L P+ VK L + ++ V CG T ++ G V+SWG +
Sbjct: 164 GEYGRLGHGDNTTQLKPKMVKVLLGH-RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGK 222
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
G G ++ +N I + NG Q Q+ CGA ++ +T G +W+
Sbjct: 223 LGRGGSEGCNIPQN-----IERL----NG------QGVCQIECGAQFSLALTKSGV-VWT 266
Query: 269 WGRGRSGVLGTGKTIDFFAPAIV 291
WG+G LG G + P +V
Sbjct: 267 WGKGDYFRLGHGSDVHVRKPQVV 289
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 21/204 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G S A+ ++G L+ WG L + G + P V GH V++V
Sbjct: 138 RIRDIACGSSHSAALTSSGELYTWG---LGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQV 194
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS L E + +SWG + G+LG G E P+ IE N V
Sbjct: 195 ACGSRDAQTLALTDEG------LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQ---GV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ CG+ + LT + WT+G G+ +LGHG+ P+ V+ L +
Sbjct: 246 CQIECGAQFSLALTK--------SGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGL-RGKK 296
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG 206
+V V G H V+ +G V++WG
Sbjct: 297 IVHVAVGALHCLAVTDSGQVYAWG 320
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+C ++ G SLA+ +G +W WG D G S V P V G +V VA
Sbjct: 245 VCQIECGAQFSLALTKSGVVWTWGK---GDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVA 301
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG 98
G+ H +A+ +G+ Y+WG N++GQ G
Sbjct: 302 VGALHCLAVTDSGQV--------YAWGDNDHGQQG 328
>gi|149730315|ref|XP_001489590.1| PREDICTED: RCC1 and BTB domain-containing protein 2 [Equus
caballus]
Length = 551
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 109/237 (45%), Gaps = 36/237 (15%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
KVAC S HVV S GE + +WG N QLG G L P I T
Sbjct: 99 KVACLSYGSGPHVVLATSEGEVF--------TWGHNAYSQLGNGTTNHGLVPCHIST--N 148
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V EV CGS+H+ +LT E W G +GQ+G G+T + +P +V
Sbjct: 149 LSNKRVIEVACGSYHSLVLTSDG------EVFAW--GYNNSGQVGSGSTANQPIPRRVTG 200
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q +V++ CG + V G+V+ WG N L +G+ +P ++
Sbjct: 201 CLQNKVVVNIACGQMCSMAVVDTGEVYVWGYSG------NGQLGLGGSGNQPTPCRVA-- 252
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID--FFAPAIV 291
G + Q + ACG AHT+++TD+G +++ WG G LGTG + + P IV
Sbjct: 253 ALQGIRVQ---RAACGYAHTLVLTDEG-QVYVWGANSYGQLGTGNKSNQPYPTPIIV 305
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 106/259 (40%), Gaps = 57/259 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE ++WG NN+GQ+G G ++ P+ + Q+
Sbjct: 154 VIEVACGSYHSLVLTSDGEV--------FAWGYNNSGQVGSGSTANQPIPRRVTGCLQNK 205
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + D E W G NGQLG G + + P +V L
Sbjct: 206 --VVVNIACGQMCSMAVV------DTGEVYVW--GYSGNGQLGLGGSGNQPTPCRVAAL- 254
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + CG HT V++ G V+ WG N G L +GN
Sbjct: 255 QGIRVQRAACGYAHTLVLTDEGQVYVWGA--------------NSYGQ-----LGTGNKS 295
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTG 280
+ P + P+ V AC + HT G ++ WG RG+S VL T
Sbjct: 296 NQP-YPTPIIVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVVLPHLTHFSCTD 354
Query: 281 KTIDFFAPAIVLWPPLTEE 299
FA V W LT E
Sbjct: 355 DVFACFASPAVSWRLLTVE 373
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVV 60
+ ++ G M S+A+ + G +++WG S G L S TP V G V
Sbjct: 207 VVNIACGQMCSMAVVDTGEVYVWG------YSGNGQLGLGGSGNQPTPCRVAALQGIRVQ 260
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
+ ACG H + L G+ Y WGAN+ GQLG G++ ++ P I
Sbjct: 261 RAACGYAHTLVLTDEGQVY--------VWGANSYGQLGTGNKSNQPYPTPI 303
>gi|440792615|gb|ELR13824.1| BTB/POZ domain containing protein [Acanthamoeba castellanii str.
Neff]
Length = 1825
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 101/238 (42%), Gaps = 57/238 (23%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ S+ G M S A+ G LW +G PL G ++ P V G VV VA
Sbjct: 115 VASIAVGQMYSAAVTTDGGLWTFGIGPL-------GHAISVKQDPEQVEALRGKKVVAVA 167
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQL----------------GLGDRESRLR 107
CGS H+ + +GE Y+WG++ QL G G+R++ +
Sbjct: 168 CGSFHMGCVTESGE--------LYTWGSSVWHQLGGQAAHITIIACYSTAGHGERKNVVE 219
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
P+ + V EV+CG++HTA+ T R +TFG G G LGHG
Sbjct: 220 PRRVTALEGKR---VVEVSCGAYHTAVRTDAGR--------VYTFGAGSLGALGHGDLVD 268
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
+P V L + V CG +HT+VV +G+ PN SL R+E G
Sbjct: 269 QEIPRLVDSLVNRC-VQHVSCGWYHTTVV--------------VGMDPNISLLRDEMG 311
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 31/157 (19%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
WTFG+G LGH + PEQV+ L + +V+V CG FH V+ +G++++WG
Sbjct: 135 WTFGIGP---LGHAISVKQ-DPEQVEAL-RGKKVVAVACGSFHMGCVTESGELYTWG--- 186
Query: 210 GLGLCPNASLTRNEAGDA--ISPILISGNGPHGPKFQ--DP-----------VQVACGAA 254
+S+ G A I+ I HG + +P V+V+CGA
Sbjct: 187 -------SSVWHQLGGQAAHITIIACYSTAGHGERKNVVEPRRVTALEGKRVVEVSCGAY 239
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT + TD G +++++G G G LG G +D P +V
Sbjct: 240 HTAVRTDAG-RVYTFGAGSLGALGHGDLVDQEIPRLV 275
>gi|301122653|ref|XP_002909053.1| RCC1 and BTB domain-containing protein, putative [Phytophthora
infestans T30-4]
gi|262099815|gb|EEY57867.1| RCC1 and BTB domain-containing protein, putative [Phytophthora
infestans T30-4]
Length = 611
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 36/244 (14%)
Query: 51 VWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKI 110
V + G VV VAC H ++ G+ + + G N+ GQLG+GD L P+
Sbjct: 166 VEELAGKRVVDVACSYFHTAIVMDNGDLH--------ACGCNDYGQLGMGDHSGHLVPRP 217
Query: 111 IETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-HGTTQSAL 169
++ F + V V CG +T + + FG ++GQLG ++ L
Sbjct: 218 VDYFFR---HPVLAVACGQHYTVA--------SLRDGGVVAFGKNDHGQLGLDRVSEPVL 266
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDA 227
+P ++ + + CG HT++V+ G V+++G LGL + R ++
Sbjct: 267 LPTRLAPPLDRAVVPQLSCGYHHTAIVTEDGAVYTFGRNDYGQLGLGHKLHMARPTPVES 326
Query: 228 ISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
+S + I+ QVACG HT+ ++DDG K++ +GR G LG ++D +
Sbjct: 327 LSRMRIT-------------QVACGCYHTLALSDDG-KVFPFGRNNHGQLGLETSMDCLS 372
Query: 288 PAIV 291
P ++
Sbjct: 373 PQLI 376
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 87/196 (44%), Gaps = 38/196 (19%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES- 104
P PV F H V+ VACG + VA + G ++G N++GQLGL DR S
Sbjct: 213 LVPRPVDYFFRHPVLAVACGQHYTVASLRDGGV--------VAFGKNDHGQLGL-DRVSE 263
Query: 105 ------RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENG 158
RL P + V +++CG HTA++T + +TFG + G
Sbjct: 264 PVLLPTRLAPPLDRA-------VVPQLSCGYHHTAIVTE--------DGAVYTFGRNDYG 308
Query: 159 QLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNAS 218
QLG G P V+ L + + + V CG +HT +S G V+ +G +
Sbjct: 309 QLGLGHKLHMARPTPVESLSR-MRITQVACGCYHTLALSDDGKVFPFGRNN------HGQ 361
Query: 219 LTRNEAGDAISPILIS 234
L + D +SP LIS
Sbjct: 362 LGLETSMDCLSPQLIS 377
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 111/296 (37%), Gaps = 95/296 (32%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL----------- 135
+S+G N G+L LGD R P ++ + V +V CG+ T +L
Sbjct: 33 FSFGQNTYGELALGDTNDRSTPTRVDLGRINDTKHVVDVACGNEQTTILFENGDVFTCGY 92
Query: 136 ---------THRKRP---------------------NDMLESMC-----WTFGLGENGQL 160
T + P ++ L ++C +T G GQL
Sbjct: 93 NDSGQCAIGTTERVPSLRFSPGLSSHHTVRLFSGNGSEHLAALCANGFLYTVGFNMRGQL 152
Query: 161 GHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG---- 212
G GT + V+EL +V V C FHT++V GD+ + G + G+G
Sbjct: 153 GLGTATTVTEATLVEELAGK-RVVDVACSYFHTAIVMDNGDLHACGCNDYGQLGMGDHSG 211
Query: 213 -LCPN---------------------ASLT--------RNEAG----DAIS-PILISGNG 237
L P ASL +N+ G D +S P+L+
Sbjct: 212 HLVPRPVDYFFRHPVLAVACGQHYTVASLRDGGVVAFGKNDHGQLGLDRVSEPVLLPTR- 270
Query: 238 PHGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P V Q++CG HT +VT+DG ++++GR G LG G + P V
Sbjct: 271 -LAPPLDRAVVPQLSCGYHHTAIVTEDG-AVYTFGRNDYGQLGLGHKLHMARPTPV 324
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 19/119 (15%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +++CG H A+V+ ED Y++G N+ GQLGLG + RP +E+ ++
Sbjct: 280 VPQLSCGYHHT-AIVT-------EDGAVYTFGRNDYGQLGLGHKLHMARPTPVESLSR-- 329
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ +V CG +HT L+ + + FG +GQLG T+ L P+ + L
Sbjct: 330 -MRITQVACGCYHTLALSD--------DGKVFPFGRNNHGQLGLETSMDCLSPQLISTL 379
>gi|442319170|ref|YP_007359191.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
gi|441486812|gb|AGC43507.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
Length = 1095
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 115/284 (40%), Gaps = 50/284 (17%)
Query: 12 MMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS-E 67
+ SL + + G +W WG+ L D + E P V G VV VA GS +
Sbjct: 308 LHSLVLKSDGTVWTWGSNQRGQLGDGTQE------QRLVPVQVMGLSG--VVAVAAGSGQ 359
Query: 68 HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC 127
H VA+++ GE ++WG N GQLG G PK + + V
Sbjct: 360 HSVAVMANGE--------VWTWGHNVEGQLGEGSSSYSAVPKRSHALVERT-----SVAA 406
Query: 128 GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVD 187
G +H +P + W +G GQLG GTT L+P QV P +V+V
Sbjct: 407 GRYHGLA----SKP----DGTVWAWGDNAKGQLGDGTTAQRLLPTQV---PGLTNMVAVA 455
Query: 188 CGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV 247
G + + + G VW+WG N L D +P + P V
Sbjct: 456 AGHHSSLALKADGTVWAWGDNA------NGQLGNGSTTDRSNPTQV-------PGLTGVV 502
Query: 248 QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A G H + V DG LW+WG +G LG G T+D P V
Sbjct: 503 SIAAGPGHALAVKADG-TLWTWGDNNTGQLGDGTTVDRPIPTQV 545
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 115/290 (39%), Gaps = 43/290 (14%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S++ V AG +LA+ + G +W WG+ G SL P W +
Sbjct: 48 SRLGLVAAGRHHTLAVRSDGTVWAWGDNAY---GQLGNGSLQDQRVPVRAWGLW--NISA 102
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
V G H +A+ S D ++WG NN GQLG G R P + +
Sbjct: 103 VGAGDLHSLAMKS--------DGTVWTWGGNNFGQLGDGTTTGRQAPVQVPGLGE----- 149
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V V G H+ L + W +G G+LG GTT L+P QV+ LP
Sbjct: 150 VVRVAAGFSHSLAL--------KTDGTVWAWGSNGAGRLGDGTTTQRLMPVQVQGLPT-- 199
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ ++ G H+ + G VW+WG N L AG + P L+ P
Sbjct: 200 -IKAIAAGNAHSLALDGTGRVWAWGSNS------NGQLGDTTAGYRMLPALV-------P 245
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ ++ G+ H+++ DG W WG G LG G T AP V
Sbjct: 246 GLTNATGLSAGSNHSLVRQADG-TTWVWGANTYGQLGDGTTTSRSAPQQV 294
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 123/307 (40%), Gaps = 62/307 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ I ++ AG SLA+D G +W WG N L D T G+ ++ + P
Sbjct: 197 LPTIKAIAAGNAHSLALDGTGRVWAWGSNSNGQLGD--TTAGYRMLPALVPGLT------ 248
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
++ GS H + + G T+ WGAN GQLG G SR P+ +
Sbjct: 249 NATGLSAGSNHSLVRQADGTTWV--------WGANTYGQLGDGTTTSRSAPQQVSGLA-- 298
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V V H+ +L + WT+G + GQLG GT + LVP QV L
Sbjct: 299 ---GVDGVLGAELHSLVLKS--------DGTVWTWGSNQRGQLGDGTQEQRLVPVQVMGL 347
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISG 235
V V+ G H+ V + G+VW+WG +E LG E + S +
Sbjct: 348 SG-VVAVAAGSGQ-HSVAVMANGEVWTWGHNVEGQLG----------EGSSSYSAV---- 391
Query: 236 NGPHGPK----FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
PK + VA G H + DG +W+WG G LG G T P V
Sbjct: 392 -----PKRSHALVERTSVAAGRYHGLASKPDG-TVWAWGDNAKGQLGDGTTAQRLLPTQV 445
Query: 292 LWPPLTE 298
P LT
Sbjct: 446 --PGLTN 450
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 111/290 (38%), Gaps = 49/290 (16%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
SV AG LA G +W WG+ L D +T L+ + P +V
Sbjct: 402 TSVAAGRYHGLASKPDGTVWAWGDNAKGQLGDGTTA--QRLLPTQVPGLT------NMVA 453
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VA G +AL + D ++WG N NGQLG G R P +
Sbjct: 454 VAAGHHSSLALKA--------DGTVWAWGDNANGQLGNGSTTDRSNPTQVPGLT-----G 500
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V + G H + + WT+G GQLG GTT +P QV P
Sbjct: 501 VVSIAAGPGHALAV--------KADGTLWTWGDNNTGQLGDGTTVDRPIPTQV---PGVT 549
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+VSV GL+H+ VV G VW+WG G + T I P+ P
Sbjct: 550 GVVSVAAGLYHSLVVKVDGTVWAWGSNY-EGQLGGGTTT-------IRPVP-----SQTP 596
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V + G H++ + DG +W+WG G LG G T P V
Sbjct: 597 NLTGVVAITAGLYHSLALKTDG-TVWAWGYNLHGQLGNGNTTTQQVPTQV 645
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 121/291 (41%), Gaps = 60/291 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ ++ V AG SLA+ G +W WG+ L D +T P V
Sbjct: 147 LGEVVRVAAGFSHSLALKTDGTVWAWGSNGAGRLGDGTT------TQRLMPVQVQGL--P 198
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
T+ +A G+ H +AL G ++WG+N+NGQLG R+ P ++
Sbjct: 199 TIKAIAAGNAHSLALDGTGR--------VWAWGSNSNGQLGDTTAGYRMLPALVPGLTNA 250
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ ++ GS H+ + + W +G GQLG GTT S P+QV L
Sbjct: 251 T-----GLSAGSNHSLV--------RQADGTTWVWGANTYGQLGDGTTTSRSAPQQVSGL 297
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDA-----ISPIL 232
++ + H+ V+ S G VW+WG + R + GD + P+
Sbjct: 298 AGVDGVLGAE---LHSLVLKSDGTVWTWGSNQ-----------RGQLGDGTQEQRLVPVQ 343
Query: 233 ISGNGPHGPKFQDPVQVACGAA-HTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+ G V VA G+ H+V V +G ++W+WG G LG G +
Sbjct: 344 VMG-------LSGVVAVAAGSGQHSVAVMANG-EVWTWGHNVEGQLGEGSS 386
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 95/212 (44%), Gaps = 37/212 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + +V AG SLA+ G +W WG L D +T P+ G
Sbjct: 847 LTGVVAVAAGYAHSLALKADGTVWGWGENIYGQLGDGTT------TQRVAPT---QAQGL 897
Query: 58 TVV-KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
TVV +A G+ H +A + D ++WG N +GQLG+G +RL P ++ + +
Sbjct: 898 TVVLSMASGTYHGLA--------RKADGTLWAWGYNAHGQLGIGTTTTRLAPTLVPSLS- 948
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V ++ H+ L +P + W +G NGQLG GTT + VP Q
Sbjct: 949 ----GVVSLSATHQHSLAL----KP----DGTVWAWGYNSNGQLGDGTTTTRHVPTQA-- 994
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
P + +V G ++ V + G VWSWG+
Sbjct: 995 -PSLSSVKAVSAGFEYSLAVKADGTVWSWGIN 1025
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 122/328 (37%), Gaps = 76/328 (23%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSL--VSSFTPSPVWDFHGHTV 59
S+ AG SLAI G++W WG L D +T + V+ FT V
Sbjct: 652 VSLGAGIYHSLAIKTDGSVWTWGYNYRGQLGDGTTTSRTTPTQVAGFTG----------V 701
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF----- 114
+A G H VAL + D ++WG+N+ GQLG G P +
Sbjct: 702 SFLAAGEFHSVALRT--------DGTAWAWGSNDKGQLGDGSARWHYAPTLSRLVGARGL 753
Query: 115 -----------NQDSPWAVYEVTCGSFHTALLTHRKRPNDM------------------- 144
+ + WA + T G + P +
Sbjct: 754 AAGDRFTAARKSDGTVWAWGDNTYGQLGDGTTLATRSPAQVSGLTDVEGLAAGEGHVVVV 813
Query: 145 -LESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVW 203
++ WT+G GQLG GTT LVP QV P +V+V G H+ + + G VW
Sbjct: 814 KMDGTVWTWGNNAKGQLGDGTTTRRLVPTQV---PGLTGVVAVAAGYAHSLALKADGTVW 870
Query: 204 SWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
WG E G + + T+ ++P G + +A G H + DG
Sbjct: 871 GWG-ENIYGQLGDGTTTQR-----VAPTQAQG-------LTVVLSMASGTYHGLARKADG 917
Query: 264 YKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
LW+WG G LG G T AP +V
Sbjct: 918 -TLWAWGYNAHGQLGIGTTTTRLAPTLV 944
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 118/300 (39%), Gaps = 52/300 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + ++ AG SLA+ G +W WG + L + +T + P+ V F G
Sbjct: 598 LTGVVAITAGLYHSLALKTDGTVWAWGYNLHGQLGNGNT------TTQQVPTQVPGFSGG 651
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V + G H +A+ + G ++WG N GQLG G SR P + F
Sbjct: 652 --VSLGAGIYHSLAIKTDGS--------VWTWGYNYRGQLGDGTTTSRTTPTQVAGFT-- 699
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + G FH+ L + W +G + GQLG G+ + P L
Sbjct: 700 ---GVSFLAAGEFHSVAL--------RTDGTAWAWGSNDKGQLGDGSARWHYAP----TL 744
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ V + G T+ S G VW+WG L +L SP +SG
Sbjct: 745 SRLVGARGLAAGDRFTAARKSDGTVWAWGDNTYGQLGDGTTLATR------SPAQVSG-- 796
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
D +A G H V+V DG +W+WG G LG G T P V P LT
Sbjct: 797 -----LTDVEGLAAGEGHVVVVKMDG-TVWTWGNNAKGQLGDGTTTRRLVPTQV--PGLT 848
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 17/166 (10%)
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSW 205
+ W +G GQLG+G+ Q VP + L + +V G H+ + S G VW+W
Sbjct: 66 DGTVWAWGDNAYGQLGNGSLQDQRVPVRAWGLWN---ISAVGAGDLHSLAMKSDGTVWTW 122
Query: 206 GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
G G + + T +A P+ + P + V+VA G +H++ + DG
Sbjct: 123 GGNN-FGQLGDGTTTGRQA-----PVQV-------PGLGEVVRVAAGFSHSLALKTDG-T 168
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLD 311
+W+WG +G LG G T P V P + ++ LD
Sbjct: 169 VWAWGSNGAGRLGDGTTTQRLMPVQVQGLPTIKAIAAGNAHSLALD 214
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 68/177 (38%), Gaps = 32/177 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S + S+ A SLA+ G +W WG N L D +T V + PS
Sbjct: 947 LSGVVSLSATHQHSLALKPDGTVWAWGYNSNGQLGDGTTT--TRHVPTQAPSL------S 998
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V V+ G E+ +A+ + D +SWG N+ GQLG G R P + N
Sbjct: 999 SVKAVSAGFEYSLAVKA--------DGTVWSWGINDRGQLGSGTATPRATPTQVAGLN-- 1048
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
VT A M FG E GQLG G T L P QV
Sbjct: 1049 ------SVTLLLAARAHALVVSADGTMRG-----FGDNEAGQLGAGDTLIRLAPNQV 1094
>gi|327273047|ref|XP_003221294.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6-like [Anolis
carolinensis]
Length = 1081
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES 104
S+ P + VV V+CG EH +A+ + G Y SWGA GQLG G+
Sbjct: 81 SYGPELIQALETQKVVHVSCGKEHSLAVCNKGRVY--------SWGAGTFGQLGTGELGD 132
Query: 105 RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
RL PK T N S + V +V CG H+ LT+ R +++G +GQLG G
Sbjct: 133 RLIPK---TINALSKYKVIQVACGHDHSIALTNDGR--------IFSWGQNIHGQLGLGK 181
Query: 165 -TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE 223
S P+QV L + L V G H+ +S +G V+ WG L L++ +
Sbjct: 182 DISSQASPQQVSAL-DGIPLAQVAAGGAHSFALSLSGVVYGWGRNNAHQL----GLSQAK 236
Query: 224 AGDAI-SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+ I P I+ + D V+CGA HT ++T +G ++++G +G LG +
Sbjct: 237 PKEQIFKPYSIAAL-----RSLDVAFVSCGAEHTAVLTQNG-SVYTFGDDSAGQLGRNSS 290
Query: 283 ID-FFAPAIVLW 293
F P V W
Sbjct: 291 SSPKFGPQKVEW 302
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 94/208 (45%), Gaps = 34/208 (16%)
Query: 85 VCYSWGANNNGQLGLGDRES-----RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRK 139
+ Y WG + GQLGLG E RP +Q AV V CG HT LL
Sbjct: 1 MLYCWGEGSAGQLGLGKGEGVSGPVPFRPGPRAPADQ----AVVLVACGERHTLLLR--- 53
Query: 140 RPNDMLESMCWTFGLGENGQLGH----GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
+D + C G GQLG G + + PE ++ L + +V V CG H+
Sbjct: 54 --DDGGVASC---GDNSRGQLGRRLPSGQEKRSYGPELIQAL-ETQKVVHVSCGKEHSLA 107
Query: 196 VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
V + G V+SWG L E GD + P I+ + +QVACG H
Sbjct: 108 VCNKGRVYSWGAGTF------GQLGTGELGDRLIPKTINALSKY-----KVIQVACGHDH 156
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
++ +T+DG +++SWG+ G LG GK I
Sbjct: 157 SIALTNDG-RIFSWGQNIHGQLGLGKDI 183
>gi|403356078|gb|EJY77629.1| Hect E3 ubiquitin ligase [Oxytricha trifallax]
Length = 1178
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 129/305 (42%), Gaps = 53/305 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPL-----PDSSTEGGFSLVSSFTPSP--VWDFH 55
++ + G ++A+ G L+ WG PD+S + P P +
Sbjct: 86 KVIQIACGDAHTVALTQDGKLYSWGGGGCGQLGHPDTSAMPKDEDGCPYQPKPKLIVVLK 145
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES----------R 105
V +VACG H VA+++ G YSWGA GQLG D S +
Sbjct: 146 NLEVKQVACGKAHTVAVLNNGH--------LYSWGAGACGQLGHPDTSSFPADEDGYPYQ 197
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT- 164
P+ + P+ + +CG HT +LT D E C FG G GQLG G
Sbjct: 198 PIPRCVTAL---KPFKLIHASCGDVHTMVLT------DQGEIYC--FGGGSCGQLGFGNI 246
Query: 165 TQSAL---------VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGL 213
+Q L VP++++ L Q +++VS+ CG H+ +S G V++WG LGL
Sbjct: 247 SQMPLDVDSCPFMPVPKKIESL-QGIFIVSLSCGDSHSMALSREGHVYAWGEATYGQLGL 305
Query: 214 CPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGR 273
L +N P K V ++CG HT+ +T+ G+ L+S+G
Sbjct: 306 DDIRDLPKNTDNKPYQPFPQKVVALMNKKI---VAISCGETHTLALTEGGH-LYSFGGNT 361
Query: 274 SGVLG 278
G LG
Sbjct: 362 CGQLG 366
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 110/264 (41%), Gaps = 58/264 (21%)
Query: 46 FTPSP--VWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
F P P + + +VA G H VA+ G Y SWGA+ GQLGL +
Sbjct: 10 FQPHPLEIDMLRNKGIYQVAGGDGHTVAVDIKGNVY--------SWGASACGQLGLASMK 61
Query: 104 S----------RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFG 153
+ P+IIE V ++ CG HT LT + +++G
Sbjct: 62 DLPTDVEGYPYQPTPRIIELL---QSVKVIQIACGDAHTVALTQ--------DGKLYSWG 110
Query: 154 LGENGQLGHGTTQSAL------VPEQVKELPQYVYLV------SVDCGLFHTSVVSSAGD 201
G GQLGH T SA+ P Q K P+ + ++ V CG HT V + G
Sbjct: 111 GGGCGQLGHPDT-SAMPKDEDGCPYQPK--PKLIVVLKNLEVKQVACGKAHTVAVLNNGH 167
Query: 202 VWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP---VQVACGAAHT 256
++SWG LG +S +E G PI P P + +CG HT
Sbjct: 168 LYSWGAGACGQLGHPDTSSFPADEDGYPYQPI------PRCVTALKPFKLIHASCGDVHT 221
Query: 257 VLVTDDGYKLWSWGRGRSGVLGTG 280
+++TD G +++ +G G G LG G
Sbjct: 222 MVLTDQG-EIYCFGGGSCGQLGFG 244
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 77/173 (44%), Gaps = 15/173 (8%)
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPE-QVKELPQY 180
+Y+V G HT + + S C GL L P ++ EL Q
Sbjct: 25 IYQVAGGDGHTVAVDIKGNVYSWGASACGQLGLASMKDLPTDVEGYPYQPTPRIIELLQS 84
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLC-PNAS-LTRNEAGDAISP----ILIS 234
V ++ + CG HT ++ G ++SWG L P+ S + ++E G P I++
Sbjct: 85 VKVIQIACGDAHTVALTQDGKLYSWGGGGCGQLGHPDTSAMPKDEDGCPYQPKPKLIVVL 144
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
N + QVACG AHTV V ++G+ L+SWG G G LG T F A
Sbjct: 145 KN-------LEVKQVACGKAHTVAVLNNGH-LYSWGAGACGQLGHPDTSSFPA 189
>gi|262368177|pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 130/292 (44%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 111 AVNSGGKHCLALSSEGEVYSWGE---AEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 167
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 168 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 216
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 217 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGV 267
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R P + G
Sbjct: 268 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRR--------PRQV--QGLQ 315
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 316 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 363
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 160 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 213
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 214 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 264
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 265 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 315
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 316 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVA--A 365
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 366 LQGKKVN---RVACGSAHTL 382
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 121/280 (43%), Gaps = 35/280 (12%)
Query: 11 GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVV 70
G +L +G ++ WG+ GG P+P V++ G + +
Sbjct: 10 GRENLYFQGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLF 66
Query: 71 ALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF 130
A+ + G+ Y+ G G+LG+G ES P ++E+ V V G
Sbjct: 67 AVTADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKV-AVNSGGK 117
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
H L+ E +++G E+G+LGHG P ++ L + + +V V G
Sbjct: 118 HCLALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGG 168
Query: 191 FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
H++ V++AGD+++WG + L +++ D + P L+ H V +A
Sbjct: 169 AHSACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIA 217
Query: 251 CGA--AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
CG+ A T+ +TDD +WSWG G G LG G + P
Sbjct: 218 CGSGDAQTLCLTDDD-TVWSWGDGDYGKLGRGGSDGCKVP 256
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 19/131 (14%)
Query: 165 TQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWSWG-MEKG-LGLCPNASLT 220
T+S P ++ + Q+V++ V+V+ G H +SS G+V+SWG E G LG +
Sbjct: 90 TESVSTPTLLESI-QHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCD 148
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
R +++ I + V VA G AH+ VT G L++WG+GR G LG
Sbjct: 149 RPRVIESLRGIEV-------------VDVAAGGAHSACVTAAG-DLYTWGKGRYGRLGHS 194
Query: 281 KTIDFFAPAIV 291
+ D P +V
Sbjct: 195 DSEDQLKPKLV 205
>gi|146169381|ref|XP_001471365.1| regulator of chromosome condensation [Tetrahymena thermophila]
gi|146145109|gb|EDK31655.1| regulator of chromosome condensation [Tetrahymena thermophila
SB210]
Length = 448
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 125/306 (40%), Gaps = 83/306 (27%)
Query: 41 SLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG 100
SL +SF P V + V++V+CG H A++ +GE +SWG ++ GQLG+
Sbjct: 60 SLQNSFQPQLVSALSKYKVMQVSCGHSHTCAIIDSGEL--------FSWGDSSEGQLGIN 111
Query: 101 DRESRLRPKI--------IETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTF 152
S P++ I TF V +V+CG +HT + + +C +F
Sbjct: 112 SNGSHYNPQLVNFSDLKGINTF-------VTDVSCGYYHTVAVLKNGQ-------VC-SF 156
Query: 153 GLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM--EKG 210
G G+ GQLG G P + L Q ++ V CG +HT + +G V+S G+ E
Sbjct: 157 GSGKKGQLGTGNQNKQYKPFLLNSLSQ---IIKVKCGFYHTLFLDESGRVYSCGLNDEGQ 213
Query: 211 LGLCPNASLTRNEAGDAISPILISG----------NGPHGPKFQDP-------------- 246
LG N G+ SP L+ G H D
Sbjct: 214 LGQGHN-------EGNISSPRLVLELEHSFIKKIFAGSHSAAITDANEIYFFGKSQLGQF 266
Query: 247 -------------VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
+++ G V VT DG K++SWG + G LG G + P++V
Sbjct: 267 LYPQLVRICQGDVNEISIGNHFGVAVTYDG-KVYSWGINQQGQLGQGDSDVRIIPSLV-- 323
Query: 294 PPLTEE 299
PL E+
Sbjct: 324 EPLNEK 329
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 101/241 (41%), Gaps = 39/241 (16%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR--ESRLRPKIIETFN 115
+ ++ACG +H + G Y+ G+N G+LG+G + ++ +P+++
Sbjct: 23 VIHQLACGLDHTAFVAKNG--------YLYTMGSNALGKLGIGQQSLQNSFQPQLVSAL- 73
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
S + V +V+CG HT + D E W G GQLG + S P+ V
Sbjct: 74 --SKYKVMQVSCGHSHTCAII------DSGELFSW--GDSSEGQLGINSNGSHYNPQLVN 123
Query: 176 --ELPQY-VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
+L ++ V CG +HT V G V S+G K L P L
Sbjct: 124 FSDLKGINTFVTDVSCGYYHTVAVLKNGQVCSFGSGK------KGQLGTGNQNKQYKPFL 177
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI-DFFAPAIV 291
++ ++V CG HT+ + + G +++S G G LG G + +P +V
Sbjct: 178 LN-------SLSQIIKVKCGFYHTLFLDESG-RVYSCGLNDEGQLGQGHNEGNISSPRLV 229
Query: 292 L 292
L
Sbjct: 230 L 230
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 69/171 (40%), Gaps = 43/171 (25%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+SQI VK G +L +D +G ++ +C L D G G + + +P V + +
Sbjct: 181 LSQIIKVKCGFYHTLFLDESGRVY---SCGLNDEGQLGQGHNEGNISSPRLVLELEHSFI 237
Query: 60 VKVACGSEHVVALVSAGETY------KGEDL------VC--------------------- 86
K+ GS H A+ A E Y G+ L +C
Sbjct: 238 KKIFAGS-HSAAITDANEIYFFGKSQLGQFLYPQLVRICQGDVNEISIGNHFGVAVTYDG 296
Query: 87 --YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL 135
YSWG N GQLG GD + R+ P ++E N+ V TCG + L
Sbjct: 297 KVYSWGINQQGQLGQGDSDVRIIPSLVEPLNEKK---VISATCGENYVICL 344
>gi|298714154|emb|CBJ33856.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 669
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 126/299 (42%), Gaps = 54/299 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF------TPSPVWDF 54
+ Q+C GG + + + G ++ WG GGF + +P +
Sbjct: 273 VQQVC---CGGQHAAVLTDCGEIFTWGR---------GGFGRLGHGNREGLESPRRIEAL 320
Query: 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
G V+VACG + A+ ++GE Y+WGA NG+LGLGD R P +E
Sbjct: 321 EGIPCVQVACGFAYTAAVTASGE--------LYTWGAGENGRLGLGDVADRHTPSRVEGL 372
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
+ V EV GS H+ +LT E + FG E GHG + L P +
Sbjct: 373 HSK----VKEVYAGSVHSCVLTR--------EGTVYAFGKHE--YTGHGDHEDVLDPRLI 418
Query: 175 KELP----QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAI 228
V +SV G +HT ++ G V++WG + LG+ + ++ RN G
Sbjct: 419 PTFSGGSGALVRQISVGPGGYHTMALTCQGQVYAWGHNRVAQLGIGNSFTVPRNMEGAYF 478
Query: 229 --SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
SP L+ + V+V G H+ +T DG +L+ GR G LG G F
Sbjct: 479 LPSPQLVE-----SLVGMNIVKVVAGWGHSAALTVDG-QLYVCGRNYQGQLGLGSPQGF 531
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 102/240 (42%), Gaps = 30/240 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
S +P V G +V +V CG +H L GE ++WG G+LG G+RE
Sbjct: 258 SDVSPVVVQGLLGLSVQQVCCGGQHAAVLTDCGEI--------FTWGRGGFGRLGHGNRE 309
Query: 104 SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
P+ IE + P +V CG +TA +T +T+G GENG+LG G
Sbjct: 310 GLESPRRIEAL-EGIP--CVQVACGFAYTAAVT--------ASGELYTWGAGENGRLGLG 358
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE 223
P +V+ L V V G H+ V++ G V+++G + G +
Sbjct: 359 DVADRHTPSRVEGLHSKVK--EVYAGSVHSCVLTREGTVYAFGKHEYTG--------HGD 408
Query: 224 AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
D + P LI + V G HT+ +T G ++++WG R LG G +
Sbjct: 409 HEDVLDPRLIPTFSGGSGALVRQISVGPGGYHTMALTCQG-QVYAWGHNRVAQLGIGNSF 467
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 81/199 (40%), Gaps = 31/199 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS-----FTPSP--VWDFHGHT 58
SV GG ++A+ G ++ WG+ + F++ + F PSP V G
Sbjct: 433 SVGPGGYHTMALTCQGQVYAWGHNRVAQLGIGNSFTVPRNMEGAYFLPSPQLVESLVGMN 492
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD- 117
+VKV G H AL G+ Y VC G N GQLGLG + + + F D
Sbjct: 493 IVKVVAGWGHSAALTVDGQLY-----VC---GRNYQGQLGLGSPQGFPQNERGHPFQADF 544
Query: 118 ------SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
+ ++ CG H+ + W+FG G+ GQLGH +T P
Sbjct: 545 CLIDRLQHLKIKQIACGGEHSVAVAENGE--------VWSFGAGQKGQLGHESTTREDFP 596
Query: 172 EQVKELPQYVY-LVSVDCG 189
V+ L ++ V CG
Sbjct: 597 RLVQALKSTRREIMHVACG 615
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 12/106 (11%)
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
V CG H +V++ G++++WG G G + + E+ I + +
Sbjct: 276 VCCGGQHAAVLTDCGEIFTWG-RGGFGRLGHGNREGLESPRRIEAL----------EGIP 324
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
VQVACG A+T VT G +L++WG G +G LG G D P+ V
Sbjct: 325 CVQVACGFAYTAAVTASG-ELYTWGAGENGRLGLGDVADRHTPSRV 369
>gi|417405695|gb|JAA49551.1| Putative e3 ubiquitin-protein ligase herc3 [Desmodus rotundus]
Length = 1050
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 139/297 (46%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIVHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEEDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 108/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IVHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG AS R + + I P
Sbjct: 134 LNQQT-ILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEEDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEEDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|148700108|gb|EDL32055.1| hect domain and RLD 4, isoform CRA_e [Mus musculus]
Length = 928
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCQKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ V CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQVACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 130/297 (43%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L S P + +
Sbjct: 86 IVAVACGEAHTLALNDKGQVYAWG------LDSDGQLGLQGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCQKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ QVACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 103/252 (40%), Gaps = 68/252 (26%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL----------- 135
WG + GQLGLG D E L P+ + F V +V CG HT +
Sbjct: 4 WGNASYGQLGLGGIDEEIVLEPRRSDFFVNKK---VRDVGCGLRHTVFVLDDGTVYTCGC 60
Query: 136 ---------THRKRPNDML----------------------ESMCWTFGLGENGQLG-HG 163
RK+P ++ + + +GL +GQLG G
Sbjct: 61 NDLGQLGHEKSRKKPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQLGLQG 120
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASL 219
+ + VP +K L + +V V CG +H+ +S A +V+ WG K GLG+
Sbjct: 121 SEECIRVPRNIKSLSD-IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGI------ 173
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
+ SP LI G F +QVA G AH+ ++T G ++ WGR + G LG
Sbjct: 174 ---DCQKQTSPQLIK--SLLGIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGL 224
Query: 280 GKTIDFFAPAIV 291
D + P ++
Sbjct: 225 NDENDRYVPNLL 236
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E + + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASYGQLGLGGIDEEIVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V VACG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVACGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|449280356|gb|EMC87683.1| RCC1 and BTB domain-containing protein 1 [Columba livia]
Length = 531
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 109/250 (43%), Gaps = 31/250 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + G + ++ GS HVV GE Y +WG N QLG G
Sbjct: 61 STIVPKKLEALCGKKISSLSYGSGPHVVLCTEDGEVY--------AWGHNGYSQLGNGTT 112
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
+ P ++ V EV CGS H+ L+ + + +G GQ+G
Sbjct: 113 NQGITP--VQVCTNLLIKKVVEVACGSHHSMALS--------FDGDLYAWGYNNCGQVGS 162
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + P +V Q +V + CG + V S G+V+ WG N L
Sbjct: 163 GSTANQPTPRRVSNCLQGKMVVGIACGQTSSMAVVSNGEVYGWGYNG------NGQLGLG 216
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
G+ ++P ++ HG +Q+ACG AHT+ +TD+G L++WG G LGTG
Sbjct: 217 NNGNQLTPCRVA--ALHGVCI---LQIACGYAHTLALTDEGL-LYAWGANTYGQLGTGNK 270
Query: 283 IDFFAPAIVL 292
+ +P ++
Sbjct: 271 SNQLSPVQIM 280
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 131/322 (40%), Gaps = 54/322 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + V T + VV+VACGS H +AL G+
Sbjct: 94 GEVYAWGHNGYSQLGNGTTNQGITPVQVCTNLLI-----KKVVEVACGSHHSMALSFDGD 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
Y +WG NN GQ+G G ++ P+ + Q V + CG + +
Sbjct: 149 LY--------AWGYNNCGQVGSGSTANQPTPRRVSNCLQGK--MVVGIACGQTSSMAVVS 198
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
+ +G NGQLG G + L P +V L V ++ + CG HT ++
Sbjct: 199 NGEV--------YGWGYNGNGQLGLGNNGNQLTPCRVAAL-HGVCILQIACGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA-CGAAHT 256
G +++WG L + +SP+ I + + V++A C +AHT
Sbjct: 250 DEGLLYAWGANT------YGQLGTGNKSNQLSPVQIM------MEKERVVEIAACHSAHT 297
Query: 257 VLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNT 307
+++ WG RG+S +L T FA V+W L+ E +D L
Sbjct: 298 SAAKTQSGQVYMWGQCRGQSVILPHLTHFACTDDVFACFATPAVMWRLLSVE-HEDFLTV 356
Query: 308 GGLDDEIKTKDLEGAEERDEKL 329
E K+ + E D K
Sbjct: 357 A----ESLKKEFDSPETSDLKF 374
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS +VP++++ L + + +S G H + + G+V++WG
Sbjct: 44 FVFGLNCSNCLGTGDNQSTIVPKKLEALCGKKISSLSYGSGP-HVVLCTEDGEVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+P+ + N + V+VACG+ H++ ++ DG L++
Sbjct: 103 G------YSQLGNGTTNQGITPVQVCTN----LLIKKVVEVACGSHHSMALSFDG-DLYA 151
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 152 WGYNNCGQVGSGSTANQPTP 171
>gi|443715597|gb|ELU07510.1| hypothetical protein CAPTEDRAFT_122289, partial [Capitella teleta]
Length = 477
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 118/254 (46%), Gaps = 38/254 (14%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRL 106
P+ + V +VACG H + +G+ Y S+G NN+ QLGLG D E
Sbjct: 68 PTRIKSLKAEKVHQVACGRSHTLLATESGKIY--------SFGCNNDRQLGLGLDDEKVC 119
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P +I+ AV ++ G +H+ +LT + + +G GE GQLG G +
Sbjct: 120 SPTVIKGLESH---AVKMLSAGMYHSCVLTDK--------GSVYLWGGGEEGQLGFG--E 166
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTR-NEAG 225
E + L +V + CG +HT++V++ G + ++G L R ++ G
Sbjct: 167 DVTKHETPERLDVDDEVVCIACGYYHTALVTAGGKLLTFGETD------EGKLGRGSDTG 220
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT-ID 284
D P ++ G H V VACG AHTV +T G+ ++++G G SG LG G +
Sbjct: 221 DNCLPKVVDGIEGH------VVSVACGGAHTVAIT--GWLVYTFGNGSSGQLGHGNMLLQ 272
Query: 285 FFAPAIVLWPPLTE 298
P ++W T+
Sbjct: 273 ADTPHKIVWQKPTK 286
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 107/258 (41%), Gaps = 47/258 (18%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSPVWDFHGHTVVKVAC 64
+ AG S + + G++++WG EG GF + +P VV +AC
Sbjct: 135 LSAGMYHSCVLTDKGSVYLWG------GGEEGQLGFGEDVTKHETPERLDVDDEVVCIAC 188
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPWAVY 123
G H ALV+AG ++G + G+LG G D PK+++ V
Sbjct: 189 GYYHT-ALVTAGGKL-------LTFGETDEGKLGRGSDTGDNCLPKVVDGIEGH----VV 236
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT-QSALVPEQVK-ELPQYV 181
V CG HT +T + +TFG G +GQLGHG A P ++ + P V
Sbjct: 237 SVACGGAHTVAITGW---------LVYTFGNGSSGQLGHGNMLLQADTPHKIVWQKPTKV 287
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
S CG HT++V+ G +W+ G G +L + P H
Sbjct: 288 R--SASCGENHTALVTDRGQLWTCGD----GRHGKLALGEENFANQFKPC-------HSV 334
Query: 242 KFQDPV--QVACGAAHTV 257
+F V QV+CG HT+
Sbjct: 335 RFSKFVVEQVSCGGCHTL 352
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 28/166 (16%)
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V ++CG HT+LL R +TFG GQLG G T+ P ++K L +
Sbjct: 27 VLHISCGDEHTSLLAGDGR--------VFTFGDNAWGQLGLGHTKPVTKPTRIKSL-KAE 77
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGNG 237
+ V CG HT + + +G ++S+G GLGL + SP +I G
Sbjct: 78 KVHQVACGRSHTLLATESGKIYSFGCNNDRQLGLGL---------DDEKVCSPTVIKGLE 128
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
H K ++ G H+ ++TD G ++ WG G G LG G+ +
Sbjct: 129 SHAVKM-----LSAGMYHSCVLTDKG-SVYLWGGGEEGQLGFGEDV 168
>gi|348563446|ref|XP_003467518.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like [Cavia
porcellus]
Length = 1050
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIIHVACGESHSLALSDQGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG + S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALATDGQFF--------TWGKNSHGQLGLGKEFPSQTSPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 108/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG +H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SVKEVACGGDHCVFLLEDGEVY--------TCGLNTKGQLG-HEREGNQPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ + + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IIHVACGESHSLALSDQGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG S R + + I P
Sbjct: 134 LNQQT-ILQVSCGNWHCLALATDGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEKDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|444729789|gb|ELW70193.1| putative E3 ubiquitin-protein ligase HERC3 [Tupaia chinensis]
Length = 983
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIIHVACGESHSLALSDQGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG + S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 108/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ + + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IIHVACGESHSLALSDQGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG AS R + + I P
Sbjct: 134 LNQQT-ILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEKDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|255585556|ref|XP_002533468.1| Ran GTPase binding protein, putative [Ricinus communis]
gi|223526683|gb|EEF28920.1| Ran GTPase binding protein, putative [Ricinus communis]
Length = 1097
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 133/296 (44%), Gaps = 44/296 (14%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTVVKVACG 65
V G + A+ +G L+ WG+ ++ G + VS + P V G V +ACG
Sbjct: 322 VACGEYHTCAVTTSGDLYTWGDGTR-NAGLLGQGTDVSHWIPKRVSGPLEGLQVFSIACG 380
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
+ H S G+ +++G G LG GDRES PK ++ S +V
Sbjct: 381 TWHSALATSNGK--------LFTFGDGAFGVLGHGDRESLSFPKEVQLL---SGLKTIKV 429
Query: 126 TCGSFHTALLTH--RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CG +HTA + + ++ +T+G G+ +LGHG+ + L+P V L Y +
Sbjct: 430 ACGVWHTAAIVEVMSQSGANVSSRKLFTWGDGDKNRLGHGSKDTYLLPTCVSSLIDYNFH 489
Query: 184 VSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ CG T ++++G V++ G LG N A D P L+
Sbjct: 490 -QIACGQTLTVALTTSGHVFTMGGTAHGQLG---------NPASDGKMPTLV-------- 531
Query: 242 KFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
QD + +V+CGA H ++T +L++WG+G +G LG G T D P +V
Sbjct: 532 --QDSLVGEFVEEVSCGAHHVAVLTSRS-ELYTWGKGANGRLGHGDTEDRRTPTLV 584
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 122/295 (41%), Gaps = 41/295 (13%)
Query: 10 GGMMSLAIDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
GG I++ G +++WG + PD S TP P+ V ++ACG
Sbjct: 214 GGSGPDDIESLGDVYLWGEVWSDAVFPDGSMSSVPIKNDVLTPKPLESNVVLDVQQIACG 273
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
HV + GE + +WG + G+LG G P+++E + V V
Sbjct: 274 VRHVALVTRQGEVF--------TWGEESGGRLGHGFETDFSCPRLVEFLAVTN---VDFV 322
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CG +HT +T D+ W G G LG GT S +P++V + + + S
Sbjct: 323 ACGEYHTCAVT---TSGDL---YTWGDGTRNAGLLGQGTDVSHWIPKRVSGPLEGLQVFS 376
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
+ CG +H+++ +S G ++++G + G+ + R L+SG
Sbjct: 377 IACGTWHSALATSNGKLFTFG-DGAFGVLGHGD--RESLSFPKEVQLLSG--------LK 425
Query: 246 PVQVACGAAHTVLVTD---------DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++VACG HT + + KL++WG G LG G + P V
Sbjct: 426 TIKVACGVWHTAAIVEVMSQSGANVSSRKLFTWGDGDKNRLGHGSKDTYLLPTCV 480
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 28/176 (15%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
L+ WG+ D + G S + P+ V + ++ACG VAL ++G +
Sbjct: 455 LFTWGDG---DKNRLGHGSKDTYLLPTCVSSLIDYNFHQIACGQTLTVALTTSGHVF--- 508
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA--VYEVTCGSFHTALLTHRKR 140
+ G +GQLG + ++ T QDS V EV+CG+ H A+LT R
Sbjct: 509 -----TMGGTAHGQLGNPASDGKM-----PTLVQDSLVGEFVEEVSCGAHHVAVLTSR-- 556
Query: 141 PNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL-FHTSV 195
S +T+G G NG+LGHG T+ P V+ L ++ ++ CG F TS+
Sbjct: 557 ------SELYTWGKGANGRLGHGDTEDRRTPTLVEALKDR-HVKNISCGSNFTTSI 605
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 23/137 (16%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWD-FHGHTVVKV 62
+ G +++A+ +G ++ G L + +++G P+ V D G V +V
Sbjct: 491 IACGQTLTVALTTSGHVFTMGGTAHGQLGNPASDGKM-------PTLVQDSLVGEFVEEV 543
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+CG+ HV L S E Y+WG NG+LG GD E R P ++E V
Sbjct: 544 SCGAHHVAVLTSRSE--------LYTWGKGANGRLGHGDTEDRRTPTLVEALKDRH---V 592
Query: 123 YEVTCGS-FHTALLTHR 138
++CGS F T++ H+
Sbjct: 593 KNISCGSNFTTSICIHK 609
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
+ CG+ H ++V+ G+V++WG E G L D P L+ F
Sbjct: 270 IACGVRHVALVTRQGEVFTWGEESG------GRLGHGFETDFSCPRLVEFLAVTNVDF-- 321
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTGKTIDFFAPAIVLWP 294
VACG HT VT G L++WG G +G+LG G + + P V P
Sbjct: 322 ---VACGEYHTCAVTTSG-DLYTWGDGTRNAGLLGQGTDVSHWIPKRVSGP 368
>gi|440800955|gb|ELR21981.1| regulator of chromosome condensation (RCC1) repeat domain
containing protein [Acanthamoeba castellanii str. Neff]
Length = 447
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 128/286 (44%), Gaps = 48/286 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ + K GG++S +A + + G D T+ P PV G +VKVA
Sbjct: 122 LVATKDGGLLSFGYGSANVV-VDGRLGHGDQRTQ--------MIPRPVLSLSGVRIVKVA 172
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ H + L G +S+G +G LG GD+ +L PK+I + ++ V
Sbjct: 173 AGAHHSLVLSDQGN--------VFSFGVGIDGSLGHGDQARQLVPKLISSLQREK---VV 221
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
++ GS H+ ++ ++FGLG G LGHG T +LVP++++ Q
Sbjct: 222 DIAAGSAHSLVVAE--------SGDVYSFGLGSEGALGHGDTDMSLVPKKIEHFVQRPA- 272
Query: 184 VSVDCGLFHTSVVS------SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
V V G H+ V+S G V S+G + G +R A A + +
Sbjct: 273 VKVAAGGSHSLVLSKLYVLEQEGRVLSFG-QNSYGQLGLGHFSRMIASPAQVQVEAA--- 328
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
V++ GA H++++T+DG +++S+G + G LG G +
Sbjct: 329 --------AVEIEAGAHHSLVLTNDG-RVYSFGLAQHGQLGHGNDL 365
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 35/210 (16%)
Query: 98 GLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGE- 156
G GD +LRPK +E ++ V +V+ G +H+ + T + +FG G
Sbjct: 90 GHGDHVDKLRPKCVEALARER---VRDVSAGLYHSLVATK--------DGGLLSFGYGSA 138
Query: 157 ----NGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLG 212
+G+LGHG ++ ++P V L V +V V G H+ V+S G+V+S+G+
Sbjct: 139 NVVVDGRLGHGDQRTQMIPRPVLSLSG-VRIVKVAAGAHHSLVLSDQGNVFSFGV----- 192
Query: 213 LCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG 272
+ SL + + P LIS + + V +A G+AH+++V + G ++S+G G
Sbjct: 193 -GIDGSLGHGDQARQLVPKLIS-----SLQREKVVDIAAGSAHSLVVAESG-DVYSFGLG 245
Query: 273 RSGVLGTGKTIDFFAPAIVLWPPLTEEFKQ 302
G LG G T + L P E F Q
Sbjct: 246 SEGALGHGDT------DMSLVPKKIEHFVQ 269
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 78/195 (40%), Gaps = 24/195 (12%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSPVWDFHGHTVVKV 62
V AGG SL + L G ++ G G S SP V++
Sbjct: 273 VKVAAGGSHSLVLSKLYVLEQEGRVLSFGQNSYGQLGLGHFSRMIASPAQVQVEAAAVEI 332
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPWA 121
G+ H + L + G YS+G +GQLG G D P +I++ ++
Sbjct: 333 EAGAHHSLVLTNDGR--------VYSFGLAQHGQLGHGNDLRDNPEPTLIQSLERER--- 381
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ +V G+ + +L+ E ++FG G+NG+LG G +A P V V
Sbjct: 382 IVDVAAGNNFSLVLS--------AEGTVFSFGCGKNGRLGKGDESNATQPTVVFAAGHTV 433
Query: 182 YLVSVDCGLFHTSVV 196
+S G H+ VV
Sbjct: 434 SAIS--AGYSHSLVV 446
>gi|307178981|gb|EFN67497.1| Probable E3 ubiquitin-protein ligase HERC4 [Camponotus floridanus]
Length = 1048
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 128/297 (43%), Gaps = 50/297 (16%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHTVVKV 62
+ G +LA++ G L+ WG + +G L S TP V +V++
Sbjct: 89 IACGSCHTLAVNEWGQLFSWG------CNMKGQLGLNSVDCTERTPRMVKALGTSVIVQI 142
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE-SRLRPKIIETFNQDSPWA 121
ACG EH +AL + GE Y SWG+N GQLG+G + ++PK I T +
Sbjct: 143 ACGIEHSIALTNDGELY--------SWGSNREGQLGIGSHTVTEIKPKRIITL---AAVP 191
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ + CG +HT +++ + + +G GQLG TQ +VP Q++ L +
Sbjct: 192 IAFIACGGYHTVVISK--------SGVVFAWGRNTFGQLGLNDTQQRIVPCQLRTL-RNA 242
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ CG + ++ G V++ G + G G N L R S +
Sbjct: 243 KVCYAACGEEFSVFLTLDGGVFTCGAGMYGQLGHGNGMNEILPRQVMELMGSTV------ 296
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
Q++CG HT+ + ++++WG G +G LG + P +VL P
Sbjct: 297 ---------TQISCGKRHTLALVPSRGRVYAWGLGGAGQLGNRASRSATTPLVVLGP 344
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 118/274 (43%), Gaps = 46/274 (16%)
Query: 38 GGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQL 97
GG + F P V + V ++ACG + V + + G+ YS G N+ GQ
Sbjct: 15 GGIEDENIFMPRQVDFAKANEVEQIACGENYTVTITNDGQV--------YSCGNNDYGQ- 65
Query: 98 GLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN 157
LG ++R R ++I + + ++ CGS HT + N+ + W G
Sbjct: 66 -LGHEKARKRLQLIPGLD---AFVFKKIACGSCHTLAV------NEWGQLFSW--GCNMK 113
Query: 158 GQLGHGTTQ-SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLC 214
GQLG + + P VK L V +V + CG+ H+ +++ G+++SWG E LG+
Sbjct: 114 GQLGLNSVDCTERTPRMVKALGTSV-IVQIACGIEHSIALTNDGELYSWGSNREGQLGI- 171
Query: 215 PNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRS 274
S T E I P I F +ACG HTV+++ G +++WGR
Sbjct: 172 --GSHTVTE----IKPKRIITLAAVPIAF-----IACGGYHTVVISKSGV-VFAWGRNTF 219
Query: 275 GVLGTGKTIDFFAP--------AIVLWPPLTEEF 300
G LG T P A V + EEF
Sbjct: 220 GQLGLNDTQQRIVPCQLRTLRNAKVCYAACGEEF 253
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 31/198 (15%)
Query: 87 YSWGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDM 144
+ WG+ +G+LGLG + E+ P+ ++ + V ++ CG +T +T+
Sbjct: 2 FCWGSTIHGELGLGGIEDENIFMPRQVDFAKANE---VEQIACGENYTVTITN------- 51
Query: 145 LESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+ ++ G + GQLGH + L + + L +V+ + CG HT V+ G ++S
Sbjct: 52 -DGQVYSCGNNDYGQLGHEKARKRL--QLIPGLDAFVF-KKIACGSCHTLAVNEWGQLFS 107
Query: 205 WG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG M+ LGL R +P ++ G VQ+ACG H++ +T+D
Sbjct: 108 WGCNMKGQLGLNSVDCTER-------TPRMVKALGT-----SVIVQIACGIEHSIALTND 155
Query: 263 GYKLWSWGRGRSGVLGTG 280
G +L+SWG R G LG G
Sbjct: 156 G-ELYSWGSNREGQLGIG 172
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 29/172 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS---FTPSPVWDFHGHTVV 60
I + GG ++ I +G ++ WG +T G L + P + V
Sbjct: 192 IAFIACGGYHTVVISKSGVVFAWGR------NTFGQLGLNDTQQRIVPCQLRTLRNAKVC 245
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
ACG E V L G ++ GA GQLG G+ + + P+ + +
Sbjct: 246 YAACGEEFSVFLTLDGGV--------FTCGAGMYGQLGHGNGMNEILPRQVMELMGST-- 295
Query: 121 AVYEVTCGSFHT-ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
V +++CG HT AL+ R R + +GLG GQLG+ ++SA P
Sbjct: 296 -VTQISCGKRHTLALVPSRGR--------VYAWGLGGAGQLGNRASRSATTP 338
>gi|387019663|gb|AFJ51949.1| putative E3 ubiquitin-protein ligase HERC4-like [Crotalus
adamanteus]
Length = 1052
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 112/267 (41%), Gaps = 35/267 (13%)
Query: 26 WGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLV 85
WGN GG P F V V CG H V ++ G
Sbjct: 4 WGNASFGQLGL-GGIDEEIVLEPRRCSFFVNKKVQDVGCGLRHTVFVLDDG--------T 54
Query: 86 CYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y+ G N+ GQLG +SR RP+ + + + + V+CG HT L ND
Sbjct: 55 VYTCGCNDLGQLG--HEKSRKRPEQVGALDAQN---IVTVSCGEAHTLAL------NDKG 103
Query: 146 ESMCWTFGLGENGQLG-HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+ W F + +GQLG GT + VP +K L + +V V CG FH+ +S +V+S
Sbjct: 104 QVYAWGFAV--DGQLGLSGTEEYTRVPRNIKSLSD-IQIVQVACGYFHSLALSKGSEVFS 160
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG K L + + I +L G F Q+A G AH+ ++T G
Sbjct: 161 WGQNKYGQLGLGYEYKKQASPQIIKSLL-------GIPF---AQIAAGGAHSFVLTLSG- 209
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ WGR + G LG D + P ++
Sbjct: 210 AVFGWGRNKFGQLGLNDENDRYVPNLL 236
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 142/329 (43%), Gaps = 49/329 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT--PSPVWDFHGHTVVK 61
I +V G +LA+++ G ++ WG + G S +T P + +V+
Sbjct: 86 IVTVSCGEAHTLALNDKGQVYAWGFA----VDGQLGLSGTEEYTRVPRNIKSLSDIQIVQ 141
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPW 120
VACG H +AL E + SWG N GQLGLG + + + P+II++ P+
Sbjct: 142 VACGYFHSLALSKGSEVF--------SWGQNKYGQLGLGYEYKKQASPQIIKSL-LGIPF 192
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
A ++ G H+ +LT L + +G + GQLG VP +K L +
Sbjct: 193 A--QIAAGGAHSFVLT--------LSGAVFGWGRNKFGQLGLNDENDRYVPNLLKSL-RS 241
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILISGNG 237
+V + CG HT+ ++ G V+++G G G L N I+P + GN
Sbjct: 242 QKIVYISCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTAHEINPRKVFELMGN- 294
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL--WPP 295
Q+ACG HT +++S+G G +G LG G T + +P V W P
Sbjct: 295 -------IVTQIACGRQHTSAFVPSTGRIYSFGLGGNGQLGMGTTSNRKSPFPVKGNWLP 347
Query: 296 LTEEFKQDELNTGGLDDEIKTKDLEGAEE 324
Q LN+ G D + G ++
Sbjct: 348 YN---GQIPLNSDGEDYYCVKRIFSGGDQ 373
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 98/235 (41%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ ++ WG G+ +P + G ++
Sbjct: 138 QIVQVACGYFHSLALSKGSEVFSWGQNKYGQLGL--GYEYKKQASPQIIKSLLGIPFAQI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AVFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y ++CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ISCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTAHEINPRKVFELMGNI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSTGRIYSF------GLGGNGQLGMGTTSNRKSPFPVKGN 344
>gi|66818759|ref|XP_643039.1| hypothetical protein DDB_G0276695 [Dictyostelium discoideum AX4]
gi|60471137|gb|EAL69105.1| hypothetical protein DDB_G0276695 [Dictyostelium discoideum AX4]
Length = 646
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 109/256 (42%), Gaps = 54/256 (21%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ ++ACG H +A+ A + Y YSWG N GQLG GD+ +R +P ++ S
Sbjct: 135 IKQIACGDSHSLAI--AEQPYG-----VYSWGVNRWGQLGHGDQLNRNQPTLLSNIGSGS 187
Query: 119 PWAVYE----VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
V CGS H+ ++++ +TFG G G+LGHG Q P V
Sbjct: 188 GSGNSISFSMVACGSQHSMIVSNYGE--------LYTFGCGTTGRLGHGDEQPKFKPTPV 239
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS 234
L +VSV G+ H+S V S G ++SWG + G N S+
Sbjct: 240 SSLVGKS-IVSVAAGVMHSSCVDSNGKIYSWGWNR-YGQLGNGSVKSQTL---------- 287
Query: 235 GNGPHGPKFQDP-------------------VQVACGAAHTVLVTDDGYKLWSWGRGRSG 275
P PKFQ+P ++V CG HT+ ++ G ++ +G G
Sbjct: 288 ---PTPPKFQNPKLSDIQQQQQQHHLMKLNFIKVVCGKNHTLALSSSG-EVVGFGFNACG 343
Query: 276 VLGTGKTIDFFAPAIV 291
LG G +D P +
Sbjct: 344 QLGNGNHMDQLYPVKI 359
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 92/222 (41%), Gaps = 37/222 (16%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
V G S+ + N G L+ +G C G F P+PV G ++V VA G
Sbjct: 198 VACGSQHSMIVSNYGELYTFG-CGTTGRLGHG--DEQPKFKPTPVSSLVGKSIVSVAAGV 254
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL--------RPKIIETFNQDS 118
H + S G+ YSWG N GQLG G +S+ PK+ + Q
Sbjct: 255 MHSSCVDSNGKI--------YSWGWNRYGQLGNGSVKSQTLPTPPKFQNPKLSDIQQQQQ 306
Query: 119 PWAV-----YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
+ +V CG HT L+ FG GQLG+G L P +
Sbjct: 307 QHHLMKLNFIKVVCGKNHTLALSSSGE--------VVGFGFNACGQLGNGNHMDQLYPVK 358
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG-MEKG-LGL 213
+ E ++V + + G +H+ ++ G+ +SWG M G LGL
Sbjct: 359 I-EFNEHV--IDIASGYYHSLCLTDNGEAYSWGYMSDGSLGL 397
>gi|115463633|ref|NP_001055416.1| Os05g0384800 [Oryza sativa Japonica Group]
gi|113578967|dbj|BAF17330.1| Os05g0384800 [Oryza sativa Japonica Group]
Length = 1086
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 133/290 (45%), Gaps = 30/290 (10%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ +G L+ WGN +S G + VS + P V G V ++CG
Sbjct: 367 VACGEYHTCAVTLSGDLYTWGNG-TSNSGLLGHGNEVSHWVPKRVNGPLEGIHVSAISCG 425
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ + ++G + G LG GDR+S P+ +E+
Sbjct: 426 PWHTAIVTSAGQLF--------TFGDGSFGVLGHGDRQSLSVPREVESLKG---LRTVRA 474
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ G+LGHG + LVP V L +
Sbjct: 475 ACGVWHTAAVVEVMVGNSSSSNCSSGKIFTWGDGDKGRLGHGDKDTRLVPTCVAALVEPN 534
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ + CG T ++++G V++ G P N D + P+ + G
Sbjct: 535 F-CQIACGHCMTVALTTSGHVYTMG-------SPVYGQLGNPQADGMLPVRVEGK--LHK 584
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F + +++CGA H ++T ++++WG+G +G LG G T D +P +V
Sbjct: 585 NFVE--EISCGAYHVAVLTSR-TEVYTWGKGANGRLGHGDTDDRSSPTLV 631
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 104/246 (42%), Gaps = 43/246 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V ++CG H + GE Y SWG + G+LG G +PK+I+
Sbjct: 312 VQNISCGGRHATLVTKQGEIY--------SWGEESGGRLGHGVDCDVPQPKLIDALAN-- 361
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ V CG +HT +T D+ W G +G LGHG S VP++V
Sbjct: 362 -MNIELVACGEYHTCAVT---LSGDL---YTWGNGTSNSGLLGHGNEVSHWVPKRVNGPL 414
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGN 236
+ +++ ++ CG +HT++V+SAG ++++G LG SL+ +++ +
Sbjct: 415 EGIHVSAISCGPWHTAIVTSAGQLFTFGDGSFGVLGHGDRQSLSVPREVESLKGLRT--- 471
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGKTIDF 285
V+ ACG HT V + K+++WG G G LG G
Sbjct: 472 ----------VRAACGVWHTAAVVEVMVGNSSSSNCSSGKIFTWGDGDKGRLGHGDKDTR 521
Query: 286 FAPAIV 291
P V
Sbjct: 522 LVPTCV 527
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80
G ++ WG+ D G + P+ V ++ACG VAL ++G Y
Sbjct: 500 GKIFTWGDG---DKGRLGHGDKDTRLVPTCVAALVEPNFCQIACGHCMTVALTTSGHVY- 555
Query: 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKR 140
+ G+ GQLG + L ++ +++ V E++CG++H A+LT R
Sbjct: 556 -------TMGSPVYGQLGNPQADGMLPVRVEGKLHKN---FVEEISCGAYHVAVLTSR-- 603
Query: 141 PNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
+ +T+G G NG+LGHG T P V+ L + +V CG+ T+ +
Sbjct: 604 ------TEVYTWGKGANGRLGHGDTDDRSSPTLVEALKDK-QVRTVVCGINFTAAI 652
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 16/148 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVK 61
C + G M++A+ +G ++ G+ P+ + G P V H + V +
Sbjct: 534 NFCQIACGHCMTVALTTSGHVYTMGS-PV---YGQLGNPQADGMLPVRVEGKLHKNFVEE 589
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
++CG+ HV L S E Y +WG NG+LG GD + R P ++E
Sbjct: 590 ISCGAYHVAVLTSRTEVY--------TWGKGANGRLGHGDTDDRSSPTLVEALKDKQ--- 638
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMC 149
V V CG TA + K + + +SMC
Sbjct: 639 VRTVVCGINFTAAICIHKWVSGVDQSMC 666
>gi|428178045|gb|EKX46922.1| hypothetical protein GUITHDRAFT_86569 [Guillardia theta CCMP2712]
Length = 306
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 111/245 (45%), Gaps = 32/245 (13%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
TP+ V G V +VACG H AL+ G+ Y+WG+ G+LG GD +
Sbjct: 83 TPALVSALQGKHVKQVACGWHHTCALIDNGQ--------LYTWGSGEYGRLGHGDEVRQA 134
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
PK++E+ V V G FH++++ ++L T+G G GQLGHG
Sbjct: 135 SPKLVESLQGKE---VTFVAAGGFHSSVII---EGGNLL-----TWGGGYFGQLGHGDET 183
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD 226
P+ VK + Q + V CG HT +++ + +VW+WG + L +
Sbjct: 184 DRKTPKMVKGVQQCIAH-EVACGTHHTLMLTQSQEVWTWGSGE------FGKLGIGDEEK 236
Query: 227 AISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFF 286
PI+I+ + + ++ G H+ +T +G L++WG G G LG G
Sbjct: 237 HAEPIMIT-----ALQGVGVIHISTGGFHSAALTSEGV-LYTWGGGDKGQLGHGDENSQN 290
Query: 287 APAIV 291
P +V
Sbjct: 291 IPVVV 295
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 109/248 (43%), Gaps = 38/248 (15%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR-- 105
P V F G V +V+CG++H L+ GE +++G N GQLG G +
Sbjct: 30 PRLVVAFLGFNVRQVSCGNQHTAILMENGEV--------FTFGRGNFGQLGQGASVTANV 81
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
P ++ V +V CG HT L N L +T+G GE G+LGHG
Sbjct: 82 STPALVSALQGKH---VKQVACGWHHTCALI----DNGQL----YTWGSGEYGRLGHGDE 130
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
P+ V+ L Q + V G FH+SV+ G++ +WG L +
Sbjct: 131 VRQASPKLVESL-QGKEVTFVAAGGFHSSVIIEGGNLLTWGGGY------FGQLGHGDET 183
Query: 226 DAISPILISGNGPHGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
D +P ++ G Q + +VACG HT+++T ++W+WG G G LG G
Sbjct: 184 DRKTPKMVKG-------VQQCIAHEVACGTHHTLMLTQS-QEVWTWGSGEFGKLGIGDEE 235
Query: 284 DFFAPAIV 291
P ++
Sbjct: 236 KHAEPIMI 243
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 99/210 (47%), Gaps = 32/210 (15%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
YSWG GQLG GD +++ +P+++ F + V +V+CG+ HTA+L M
Sbjct: 9 YSWGQGVLGQLGHGDEKTQRQPRLVVAF---LGFNVRQVSCGNQHTAIL--------MEN 57
Query: 147 SMCWTFGLGENGQLGHGTTQSALV--PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+TFG G GQLG G + +A V P V L Q ++ V CG HT + G +++
Sbjct: 58 GEVFTFGRGNFGQLGQGASVTANVSTPALVSAL-QGKHVKQVACGWHHTCALIDNGQLYT 116
Query: 205 WGMEKGLGLCPNASLTRNEAGDAI---SPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
WG + R GD + SP L+ + ++ VA G H+ ++ +
Sbjct: 117 WG---------SGEYGRLGHGDEVRQASPKLVE-----SLQGKEVTFVAAGGFHSSVIIE 162
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G L +WG G G LG G D P +V
Sbjct: 163 GG-NLLTWGGGYFGQLGHGDETDRKTPKMV 191
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 76/185 (41%), Gaps = 29/185 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V AGG S I G L WG G TP V +V
Sbjct: 146 EVTFVAAGGFHSSVIIEGGNLLTWGGGYFGQL---GHGDETDRKTPKMVKGVQQCIAHEV 202
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG+ H + L + E + +WG+ G+LG+GD E P +I V
Sbjct: 203 ACGTHHTLMLTQSQEVW--------TWGSGEFGKLGIGDEEKHAEPIMITALQ---GVGV 251
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++ G FH+A LT E + +T+G G+ GQLGHG E + +P V
Sbjct: 252 IHISTGGFHSAALTS--------EGVLYTWGGGDKGQLGHG-------DENSQNIPVVVE 296
Query: 183 LVSVD 187
++S D
Sbjct: 297 VISCD 301
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 13/146 (8%)
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
S +++G G GQLGHG ++ P V + + V CG HT+++ G+V+++G
Sbjct: 6 SEVYSWGQGVLGQLGHGDEKTQRQPRLVVAFLGF-NVRQVSCGNQHTAILMENGEVFTFG 64
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISG-NGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
L AS+T N + +P L+S G H QVACG HT + D+G +
Sbjct: 65 RGNFGQLGQGASVTANVS----TPALVSALQGKH------VKQVACGWHHTCALIDNG-Q 113
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIV 291
L++WG G G LG G + +P +V
Sbjct: 114 LYTWGSGEYGRLGHGDEVRQASPKLV 139
>gi|218193272|gb|EEC75699.1| hypothetical protein OsI_12517 [Oryza sativa Indica Group]
Length = 555
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 136/348 (39%), Gaps = 96/348 (27%)
Query: 10 GGMMSLAIDNAGALWMWGNCPLPDSSTEGG---FSLVSSFTPSPV-W-DFHGHTVVKVAC 64
GG+ + A+++WG ++ +G + S P W D + VAC
Sbjct: 84 GGLRVAGVPTKSAIYLWGYNHSGQTARKGKECHLRIPKSLPPKLFKWQDGKNLRWIDVAC 143
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G H A+ S G Y +WGAN+ GQLG G ES P+ ++ + V
Sbjct: 144 GRGHTAAVASDGSLY--------TWGANDFGQLGDGTEESAKEPQKVKALETE---FVKS 192
Query: 125 VTCGSFHTALLTHRKRPNDML-ESMCWTFG------------------------------ 153
V+CG+ TA + + N + S W +G
Sbjct: 193 VSCGAHCTAAVAEPRENNGTISRSRLWVWGQNQGSDYPRLFWGALAPNTVIRQVSCGAVH 252
Query: 154 --------------LGENGQLGHGTTQSALVPEQV--------KELPQYVYLVSVDCGLF 191
E GQLG G T L +V E P+ V +V V CG +
Sbjct: 253 VMALSEDGLLQAWGYNEYGQLGRGCTSEGLQGARVLNAYARFLDEAPELVKIVRVSCGEY 312
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD---------AISPILISGNGPHGPK 242
HT+ +S G+V++WG+ +G + SL ++GD A+ +I
Sbjct: 313 HTAAISENGEVYTWGL-GSMGQLGHCSL---QSGDKELIPRRVVALDRTVIR-------- 360
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
V+CG H+ VT+DG L++WG G G LG G FF+ A+
Sbjct: 361 -----DVSCGGVHSCAVTEDG-ALYAWGGGHVGQLGLGPQSGFFSCAL 402
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 39/164 (23%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL-----GDRESRLRPKIIET 113
+V+V+CG H A+ GE Y +WG + GQLG GD+E L P+ +
Sbjct: 304 IVRVSCGEYHTAAISENGEVY--------TWGLGSMGQLGHCSLQSGDKE--LIPRRVVA 353
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ------- 166
++ + +V+CG H+ +T + + +G G GQLG G
Sbjct: 354 LDRT---VIRDVSCGGVHSCAVTE--------DGALYAWGGGHVGQLGLGPQSGFFSCAL 402
Query: 167 --SALVPEQVKEL--PQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
S ++ + L P V LV+ CG HT V ++ WG
Sbjct: 403 NGSDMLLRNIPVLIIPSGVQLVT--CGHSHTLVSMKDSRIYGWG 444
>gi|350587982|ref|XP_003129374.3| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Sus scrofa]
Length = 1050
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIVHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEESVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG + S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEEDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 239 LRAQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 110/241 (45%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG +H V L+ GE Y + G N GQLG +RE +P+ I +
Sbjct: 35 SVKEVACGGDHSVFLLEDGEVY--------TCGLNTKGQLG-HEREGN-KPEQIGALADE 84
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT-QSALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT +S VP +++
Sbjct: 85 H---IVHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEESVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG AS R + + I P
Sbjct: 134 LNQQT-ILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEEDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEEDRESPCHVKLLRAQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|222631437|gb|EEE63569.1| hypothetical protein OsJ_18386 [Oryza sativa Japonica Group]
Length = 1132
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 133/290 (45%), Gaps = 30/290 (10%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ +G L+ WGN +S G + VS + P V G V ++CG
Sbjct: 413 VACGEYHTCAVTLSGDLYTWGNG-TSNSGLLGHGNEVSHWVPKRVNGPLEGIHVSAISCG 471
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ + ++G + G LG GDR+S P+ +E+
Sbjct: 472 PWHTAIVTSAGQLF--------TFGDGSFGVLGHGDRQSLSVPREVESLKG---LRTVRA 520
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ G+LGHG + LVP V L +
Sbjct: 521 ACGVWHTAAVVEVMVGNSSSSNCSSGKIFTWGDGDKGRLGHGDKDTRLVPTCVAALVEPN 580
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ + CG T ++++G V++ G P N D + P+ + G
Sbjct: 581 F-CQIACGHCMTVALTTSGHVYTMG-------SPVYGQLGNPQADGMLPVRVEGK--LHK 630
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F + +++CGA H ++T ++++WG+G +G LG G T D +P +V
Sbjct: 631 NFVE--EISCGAYHVAVLTSR-TEVYTWGKGANGRLGHGDTDDRSSPTLV 677
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 104/246 (42%), Gaps = 43/246 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V ++CG H + GE Y SWG + G+LG G +PK+I+
Sbjct: 358 VQNISCGGRHATLVTKQGEIY--------SWGEESGGRLGHGVDCDVPQPKLIDALAN-- 407
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ V CG +HT +T D+ W G +G LGHG S VP++V
Sbjct: 408 -MNIELVACGEYHTCAVT---LSGDL---YTWGNGTSNSGLLGHGNEVSHWVPKRVNGPL 460
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGN 236
+ +++ ++ CG +HT++V+SAG ++++G LG SL+ +++ +
Sbjct: 461 EGIHVSAISCGPWHTAIVTSAGQLFTFGDGSFGVLGHGDRQSLSVPREVESLKGLRT--- 517
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGKTIDF 285
V+ ACG HT V + K+++WG G G LG G
Sbjct: 518 ----------VRAACGVWHTAAVVEVMVGNSSSSNCSSGKIFTWGDGDKGRLGHGDKDTR 567
Query: 286 FAPAIV 291
P V
Sbjct: 568 LVPTCV 573
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80
G ++ WG+ D G + P+ V ++ACG VAL ++G Y
Sbjct: 546 GKIFTWGDG---DKGRLGHGDKDTRLVPTCVAALVEPNFCQIACGHCMTVALTTSGHVY- 601
Query: 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKR 140
+ G+ GQLG + L ++ +++ V E++CG++H A+LT R
Sbjct: 602 -------TMGSPVYGQLGNPQADGMLPVRVEGKLHKN---FVEEISCGAYHVAVLTSR-- 649
Query: 141 PNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
+ +T+G G NG+LGHG T P V+ L + +V CG+ T+ +
Sbjct: 650 ------TEVYTWGKGANGRLGHGDTDDRSSPTLVEALKDK-QVRTVVCGINFTAAI 698
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 16/148 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVK 61
C + G M++A+ +G ++ G+ P+ + G P V H + V +
Sbjct: 580 NFCQIACGHCMTVALTTSGHVYTMGS-PV---YGQLGNPQADGMLPVRVEGKLHKNFVEE 635
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
++CG+ HV L S E Y +WG NG+LG GD + R P ++E
Sbjct: 636 ISCGAYHVAVLTSRTEVY--------TWGKGANGRLGHGDTDDRSSPTLVEALKDKQ--- 684
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMC 149
V V CG TA + K + + +SMC
Sbjct: 685 VRTVVCGINFTAAICIHKWVSGVDQSMC 712
>gi|281344274|gb|EFB19858.1| hypothetical protein PANDA_001437 [Ailuropoda melanoleuca]
Length = 1050
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIVHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG + S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEEDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 108/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IVHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG AS R + + I P
Sbjct: 134 LNQQT-ILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEEDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEEDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|413946332|gb|AFW78981.1| putative regulator of chromosome condensation (RCC1) family protein
[Zea mays]
Length = 1009
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 138/300 (46%), Gaps = 40/300 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTV 59
+S + V G + AI +G L+ WG+ ++ G + S + P V G V
Sbjct: 294 VSNVEYVACGEFHTCAITASGDLYTWGD-GYYNAGLLGHGAGTSHWLPKRVSGPLEGVQV 352
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ V+CGS H S+G+ + ++G G LG G+R + PK +ET S
Sbjct: 353 LSVSCGSWHSALTTSSGKVF--------TFGDGTFGALGHGNRHTVAYPKEVETL---SG 401
Query: 120 WAVYEVTCGSFHTALL--THRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ +V CG +H+A + T + +++ +T+G G+ LGHG + LVP V+ L
Sbjct: 402 FRTIKVACGLWHSAAIVETTNQAGVNVISRKLFTWGAGDKNPLGHGDKDARLVPTCVQSL 461
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
Y + V CG T +S++G V++ G S + + G+ S +G
Sbjct: 462 IDYNFH-QVACGHSMTIALSTSGHVFTMG-----------SSSNGQLGNPKS------DG 503
Query: 238 PHGPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
H QD + +++CG+ H ++T ++++WG G +G LG G D P +V
Sbjct: 504 KHPTPVQDRLAGELVEEISCGSCHVAVLTSRS-EVYTWGMGANGRLGHGGVEDKKKPTLV 562
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 119/290 (41%), Gaps = 45/290 (15%)
Query: 17 IDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTVVKVACGSEHVVAL 72
I++ G +++WG EG + + S P P+ V ++ACG H+
Sbjct: 199 IESLGDVYVWGEVWTDMIPAEGSANYLCSKADILIPKPLESDVVLDVQQIACGYRHIALT 258
Query: 73 VSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHT 132
GE + +WG G+LG G RPK++E + V V CG FHT
Sbjct: 259 TRQGEVF--------AWGEELGGRLGHGTDADISRPKLVEALAVSN---VEYVACGEFHT 307
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFH 192
+T D+ W G G LGHG S +P++V + V ++SV CG +H
Sbjct: 308 CAIT---ASGDLYT---WGDGYYNAGLLGHGAGTSHWLPKRVSGPLEGVQVLSVSCGSWH 361
Query: 193 TSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
+++ +S+G V+++ G LG ++ + + +S ++VA
Sbjct: 362 SALTTSSGKVFTFGDGTFGALGHGNRHTVAYPKEVETLSGFRT-------------IKVA 408
Query: 251 CGAAHTVLVTDD---------GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
CG H+ + + KL++WG G LG G P V
Sbjct: 409 CGLWHSAAIVETTNQAGVNVISRKLFTWGAGDKNPLGHGDKDARLVPTCV 458
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 100/250 (40%), Gaps = 73/250 (29%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHTV 59
Q+ SV G S ++G ++ +G+ T G + T P V G
Sbjct: 351 QVLSVSCGSWHSALTTSSGKVFTFGD------GTFGALGHGNRHTVAYPKEVETLSGFRT 404
Query: 60 VKVACGSEHVVALV----SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET-- 113
+KVACG H A+V AG L ++WGA + LG GD+++RL P +++
Sbjct: 405 IKVACGLWHSAAIVETTNQAGVNVISRKL--FTWGAGDKNPLGHGDKDARLVPTCVQSLI 462
Query: 114 ---FNQ----------------------------DSPWA----------------VYEVT 126
F+Q +P + V E++
Sbjct: 463 DYNFHQVACGHSMTIALSTSGHVFTMGSSSNGQLGNPKSDGKHPTPVQDRLAGELVEEIS 522
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSV 186
CGS H A+LT R S +T+G+G NG+LGHG + P V+ L ++ S+
Sbjct: 523 CGSCHVAVLTSR--------SEVYTWGMGANGRLGHGGVEDKKKPTLVEALKDR-HVKSI 573
Query: 187 DCGLFHTSVV 196
CG T+ +
Sbjct: 574 ACGSNFTTCI 583
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 23/137 (16%)
Query: 7 VKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWD-FHGHTVVKV 62
V G M++A+ +G ++ G N L + ++G P+PV D G V ++
Sbjct: 469 VACGHSMTIALSTSGHVFTMGSSSNGQLGNPKSDGKH-------PTPVQDRLAGELVEEI 521
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+CGS HV L S E Y +WG NG+LG G E + +P ++E V
Sbjct: 522 SCGSCHVAVLTSRSEVY--------TWGMGANGRLGHGGVEDKKKPTLVEALKDRH---V 570
Query: 123 YEVTCGS-FHTALLTHR 138
+ CGS F T + H+
Sbjct: 571 KSIACGSNFTTCICIHK 587
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 18/113 (15%)
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+ CG H ++ + G+V++WG E G LG +A ++R + +A++
Sbjct: 248 IACGYRHIALTTRQGEVFAWGEELGGRLGHGTDADISRPKLVEALA-------------V 294
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTGKTIDFFAPAIVLWP 294
+ VACG HT +T G L++WG G +G+LG G + P V P
Sbjct: 295 SNVEYVACGEFHTCAITASG-DLYTWGDGYYNAGLLGHGAGTSHWLPKRVSGP 346
>gi|313221348|emb|CBY32102.1| unnamed protein product [Oikopleura dioica]
Length = 1199
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 125/283 (44%), Gaps = 46/283 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSP-VWDFHGH-TVV 60
+I V AG S+AI +G L+ WG S G P + D H +VV
Sbjct: 82 EIFHVAAGDFFSIAIAESGLLFGWGR------SLNGELMCKQDSLHEPKLLDKIMHWSVV 135
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR-LRPKIIETFNQDSP 119
+VACG++H +AL G SWG+N GQLGLG E L P II + N
Sbjct: 136 QVACGAQHCIALTEEG--------TILSWGSNTQGQLGLGSSEIEFLEPTIIASLN---A 184
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ + ++ G++H+ +L+ P+ L +T+G GQLGHG + S ++ + +
Sbjct: 185 FPISQICAGAYHSGVLS----PSGTL----FTWGKNNWGQLGHGNSDSFQSSPRLVKTLR 236
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILISGN 236
+ +V V G H+ + G V+SWG N L N + P + + G
Sbjct: 237 HQEVVFVAMGEEHSVCRTRNGGVFSWGHGG------NGQLGHNSMANVTQPKKIMELMGT 290
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
Q+ CG HT+ +TD KL +G + LGT
Sbjct: 291 --------TVCQICCGRRHTISLTDK-RKLLGFGLNSNNQLGT 324
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 92/215 (42%), Gaps = 47/215 (21%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y WG N+ GQLGLG + P I D+ +V + G HT LT ++
Sbjct: 2 YGWGKNDYGQLGLGSENMLISCPSPI-----DANQSVISIASGLRHTVYLTSTRK----- 51
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKEL-PQYVYLVSVDCGLFHTSVVSSAGDVWS 204
++ G E GQLG +Q P V + ++ V+ G F + ++ +G ++
Sbjct: 52 ---VYSCGSNEFGQLGQQKSQCR--PSLVTGFGAEEIFHVAA--GDFFSIAIAESGLLFG 104
Query: 205 WGME-KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP------VQVACGAAHTV 257
WG G +C SL H PK D VQVACGA H +
Sbjct: 105 WGRSLNGELMCKQDSL-------------------HEPKLLDKIMHWSVVQVACGAQHCI 145
Query: 258 LVTDDGYKLWSWGRGRSGVLGTGKT-IDFFAPAIV 291
+T++G + SWG G LG G + I+F P I+
Sbjct: 146 ALTEEG-TILSWGSNTQGQLGLGSSEIEFLEPTII 179
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 107/247 (43%), Gaps = 35/247 (14%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
PS V F + VA G +A+ +G + + WG + NG+L + ++S
Sbjct: 72 PSLVTGFGAEEIFHVAAGDFFSIAIAESG--------LLFGWGRSLNGEL-MCKQDSLHE 122
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
PK+++ W+V +V CG+ H LT E ++G GQLG G+++
Sbjct: 123 PKLLDKIMH---WSVVQVACGAQHCIALTE--------EGTILSWGSNTQGQLGLGSSEI 171
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAG 225
+ + + + G +H+ V+S +G +++WG LG + S
Sbjct: 172 EFLEPTIIASLNAFPISQICAGAYHSGVLSPSGTLFTWGKNNWGQLGHGNSDSFQS---- 227
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
SP L+ + Q+ V VA G H+V T +G ++SWG G +G LG +
Sbjct: 228 ---SPRLVKT-----LRHQEVVFVAMGEEHSVCRTRNG-GVFSWGHGGNGQLGHNSMANV 278
Query: 286 FAPAIVL 292
P ++
Sbjct: 279 TQPKKIM 285
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 72/174 (41%), Gaps = 30/174 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSP--VWDFHGHT 58
+SQIC AG S + +G L+ WG ++ + G SF SP V
Sbjct: 187 ISQIC---AGAYHSGVLSPSGTLFTWGK----NNWGQLGHGNSDSFQSSPRLVKTLRHQE 239
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQD 117
VV VA G EH V G + SWG NGQLG + +PK I+E
Sbjct: 240 VVFVAMGEEHSVCRTRNGGVF--------SWGHGGNGQLGHNSMANVTQPKKIMELMGT- 290
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
V ++ CG HT LT +++ FGL N QLG SA +P
Sbjct: 291 ---TVCQICCGRRHTISLTDKRK--------LLGFGLNSNNQLGTHNDTSARLP 333
>gi|296196017|ref|XP_002745644.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 2
[Callithrix jacchus]
Length = 1050
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIIHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG + S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 108/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IIHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG AS R + + I P
Sbjct: 134 LNQQT-ILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEKDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|334183781|ref|NP_177129.2| regulator of chromosome condensation and FYVE zinc finger
domain-containing protein [Arabidopsis thaliana]
gi|332196844|gb|AEE34965.1| regulator of chromosome condensation and FYVE zinc finger
domain-containing protein [Arabidopsis thaliana]
Length = 1041
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 130/300 (43%), Gaps = 47/300 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTVV 60
S+ G + AI +G L+ WG N L E S + P V D G V
Sbjct: 356 SLACGDFHTCAITQSGDLYSWGDGTHNVDLLGHGNES-----SCWIPKRVTGDLQGLYVS 410
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VACG H + S+G+ +++G G LG GDR S P+ +E+
Sbjct: 411 DVACGPWHTAVVASSGQ--------LFTFGDGTFGALGHGDRRSTSVPREVESL---IGL 459
Query: 121 AVYEVTCGSFHTALLTH-----RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V +V CG +HTA + + D +T+G GE GQLGHG + L+PE V
Sbjct: 460 IVTKVACGVWHTAAVVEVTNEASEAEVDSSRGQVFTWGDGEKGQLGHGDNDTKLLPECVI 519
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L + V CG T +S G V++ G S + G+ + G
Sbjct: 520 SLTNE-NICQVACGHSLTVSRTSRGHVYTMG-----------STAYGQLGNPTA----KG 563
Query: 236 NGP---HGPKFQDPV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
N P G + V ++ACG+ H ++T ++++WG+G +G LG G + PA+V
Sbjct: 564 NFPERVEGDIVEASVEEIACGSYHVAVLTSKS-EIYTWGKGLNGQLGHGNVENKREPAVV 622
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 125/295 (42%), Gaps = 50/295 (16%)
Query: 17 IDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTVV----KVACGSEHVVA 71
D G +++WG + D G G SL S+ + + T+V +ACG H V
Sbjct: 256 FDALGDVFVWGE-SISDGVLSGTGNSLNSTTEDALLPKALESTIVLDAQNIACGKCHAVL 314
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
+ GE + SWG G+LG G +PK I + + CG FH
Sbjct: 315 VTKQGEIF--------SWGEGKGGKLGHGLETDAQKPKFISSVRG---LGFKSLACGDFH 363
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF 191
T +T + D+ W G LGHG S +P++V Q +Y+ V CG +
Sbjct: 364 TCAIT---QSGDLYS---WGDGTHNVDLLGHGNESSCWIPKRVTGDLQGLYVSDVACGPW 417
Query: 192 HTSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV 249
HT+VV+S+G ++++ G LG S + +++ ++++ +V
Sbjct: 418 HTAVVASSGQLFTFGDGTFGALGHGDRRSTSVPREVESLIGLIVT-------------KV 464
Query: 250 ACGAAHT---VLVTDDGY---------KLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
ACG HT V VT++ ++++WG G G LG G P V+
Sbjct: 465 ACGVWHTAAVVEVTNEASEAEVDSSRGQVFTWGDGEKGQLGHGDNDTKLLPECVI 519
>gi|301755552|ref|XP_002913643.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like
[Ailuropoda melanoleuca]
Length = 1129
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 139/297 (46%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 164 HIVHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 217
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG S+ P+ + + +
Sbjct: 218 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQASPQRVRSL-EG 268
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 269 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEEDRESPCHVK-L 317
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 318 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 371
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 372 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 420
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 108/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 114 SVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLG-HEREGNKPEQIGALADQH 164
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 165 ----IVHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 212
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG AS R + + I P
Sbjct: 213 LNQQT-ILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGI-P 270
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 271 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEEDRESPCH 314
Query: 291 V 291
V
Sbjct: 315 V 315
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 271 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEEDRESPCHVKLLRTQKVVYIS 327
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 328 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 375
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 376 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 421
>gi|302753472|ref|XP_002960160.1| hypothetical protein SELMODRAFT_73640 [Selaginella moellendorffii]
gi|300171099|gb|EFJ37699.1| hypothetical protein SELMODRAFT_73640 [Selaginella moellendorffii]
Length = 435
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 115/270 (42%), Gaps = 46/270 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN--------CPLPDSSTEGGFSLVSSFTPSPVWDF 54
+I V AGG + A+ +G L+ WG PD EG S + V
Sbjct: 188 RIVHVSAGGSHTAAVTESGELYTWGRDEGEGRLGHGNPDIMDEGALSRPTKVQALDV--- 244
Query: 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
+ V CG +AL +G+ +SWG N N +LG G R + +PK++
Sbjct: 245 ---PIALVYCGGFFTMALTKSGQ--------LWSWGGNANHELGHGTRANNWKPKVVAAL 293
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
+ + +V CG FH A LT + T+G G NGQLGHGT ++ P V
Sbjct: 294 EDVT---LVQVACGGFHAAALTQ--------DGKVITWGYGGNGQLGHGTLENGKEPAIV 342
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGL-CPNASLTRNEAGDAISPILI 233
+ + + CG T+ ++ GD+++WG + L P + + P+L+
Sbjct: 343 EAMADKT-CTYIACGPAWTAAITENGDLYTWGKNRDYQLGIPGLK------DEQLDPVLV 395
Query: 234 SGNGPHGPKFQDPVQ---VACGAAHTVLVT 260
P + PV+ V+CGA H V +
Sbjct: 396 --QFPQALHEKTPVEVLGVSCGANHGVCIV 423
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 129/308 (41%), Gaps = 47/308 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF--SLVSSFTPSPVWDFHGHT 58
+ ++ AGG+ ++A+ G ++ WG + G + L+ P D
Sbjct: 134 IKRVQMASAGGLHNIALTEVGNVYTWGYGAF-GALGHGSYERELLPRLLEGPWKD----R 188
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGAN-NNGQLGLG-----DRESRLRPKIIE 112
+V V+ G H A+ +GE Y+WG + G+LG G D + RP ++
Sbjct: 189 IVHVSAGGSHTAAVTESGE--------LYTWGRDEGEGRLGHGNPDIMDEGALSRPTKVQ 240
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPE 172
D P A+ V CG F T LT W++G N +LGHGT + P+
Sbjct: 241 AL--DVPIAL--VYCGGFFTMALTK--------SGQLWSWGGNANHELGHGTRANNWKPK 288
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
V L + V LV V CG FH + ++ G V +WG N L + P +
Sbjct: 289 VVAAL-EDVTLVQVACGGFHAAALTQDGKVITWGYGG------NGQLGHGTLENGKEPAI 341
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT-GKTIDFFAPAIV 291
+ + +ACG A T +T++G L++WG+ R LG G + P +V
Sbjct: 342 VEAMADKTCTY-----IACGPAWTAAITENG-DLYTWGKNRDYQLGIPGLKDEQLDPVLV 395
Query: 292 LWPPLTEE 299
+P E
Sbjct: 396 QFPQALHE 403
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 110/260 (42%), Gaps = 35/260 (13%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V CG H V +D+ + WG + G+LG+ ++ +P + +
Sbjct: 89 VGVTCGLFHSVLFAE-------QDV--FVWGKGDGGRLGIDTEFNQYKPYVNPRIKR--- 136
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V + G H LT +T+G G G LGHG+ + L+P ++ E P
Sbjct: 137 --VQMASAGGLHNIALTEVGN--------VYTWGYGAFGALGHGSYERELLP-RLLEGPW 185
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+V V G HT+ V+ +G++++WG ++G G + + + G P +
Sbjct: 186 KDRIVHVSAGGSHTAAVTESGELYTWGRDEGEGRLGHGNPDIMDEGALSRPTKVQ----- 240
Query: 240 GPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTE 298
P+ V CG T+ +T G +LWSWG + LG G + + P +V E
Sbjct: 241 --ALDVPIALVYCGGFFTMALTKSG-QLWSWGGNANHELGHGTRANNWKPKVV---AALE 294
Query: 299 EFKQDELNTGGLDDEIKTKD 318
+ ++ GG T+D
Sbjct: 295 DVTLVQVACGGFHAAALTQD 314
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 32/177 (18%)
Query: 135 LTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL----------- 183
L R + E W +G G +GQ+GHG+ + +P + L +
Sbjct: 23 LADRVSSGEPAELEVWAWGRGTHGQVGHGSEDTEKLPVLISTLKLAAFTGMAPIQGRMPA 82
Query: 184 ------VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
V V CGLFH SV+ + DV+ WG G L + + + P +
Sbjct: 83 KPRLGNVGVTCGLFH-SVLFAEQDVFVWGKGDGGRLGIDTEFNQYK------PYV----- 130
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
P+ + + G H + +T+ G +++WG G G LG G P ++ P
Sbjct: 131 --NPRIKRVQMASAGGLHNIALTEVG-NVYTWGYGAFGALGHGSYERELLPRLLEGP 184
>gi|421871589|ref|ZP_16303210.1| regulator of chromosome condensation family protein [Brevibacillus
laterosporus GI-9]
gi|372459473|emb|CCF12759.1| regulator of chromosome condensation family protein [Brevibacillus
laterosporus GI-9]
Length = 392
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 132/320 (41%), Gaps = 46/320 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTV 59
+S + V G ++A+ G +W WG + E S + TP V W V
Sbjct: 82 LSDVLMVDTGTSHTVALQKDGTVWTWGWSAYGELGNEKAKS--TEKTPHHVKWL---SDV 136
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+V G +AL ED +++G N +GQLG G E+R++P +
Sbjct: 137 KQVRAGENFTLALK--------EDGTVWAFGKNRSGQLGDGTTETRVKPVQVSGLTD--- 185
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ + G + L+ + W +G GQLG+GT + AL P QV EL
Sbjct: 186 --IVAIDAGEEFSLALSE--------DGTVWAWGNNSVGQLGNGTREKALQPVQVSELTD 235
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
++++ G V+S GDV+ WG +G L + SP+LI G
Sbjct: 236 ---VIAISTGEKQGYAVTSNGDVYGWGYNQG-------KLGDGTKKSSNSPVLIDG---- 281
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
D + V G HT+ + +DG +W+WG G LG G +++ ++ TE
Sbjct: 282 ---IYDVIAVDSGKQHTLALKEDG-TVWAWGTNTHGQLGYGTPVNYSMTPNQVFLESTEP 337
Query: 300 FKQD-ELNTGGLDDEIKTKD 318
Q ++ GG KD
Sbjct: 338 LNQIVAIDAGGFHSHAIKKD 357
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 124/299 (41%), Gaps = 54/299 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S + V+AG +LA+ G +W +G + L D +TE + V S + D
Sbjct: 133 LSDVKQVRAGENFTLALKEDGTVWAFGKNRSGQLGDGTTE---TRVKPVQVSGLTD---- 185
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V + G E +AL ED ++WG N+ GQLG G RE L+P +
Sbjct: 186 -IVAIDAGEEFSLAL--------SEDGTVWAWGNNSVGQLGNGTREKALQPVQVSELTD- 235
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN-GQLGHGTTQSALVPEQVKE 176
V ++ G +T +G G N G+LG GT +S+ P +
Sbjct: 236 ----VIAISTGEKQGYAVTSNGD----------VYGWGYNQGKLGDGTKKSSNSPVLIDG 281
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPIL 232
+ +++VD G HT + G VW+WG G G N S+T N+ +
Sbjct: 282 IYD---VIAVDSGKQHTLALKEDGTVWAWGTNTHGQLGYGTPVNYSMTPNQ-------VF 331
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ P V + G H+ + DG +WSWG +G LG G + PA +
Sbjct: 332 LESTEP----LNQIVAIDAGGFHSHAIKKDG-TVWSWGFNSNGELGLGHSKKQMYPAKI 385
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 37/185 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG--NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
++ + ++ G A+ + G ++ WG L D + + + SPV +
Sbjct: 233 LTDVIAISTGEKQGYAVTSNGDVYGWGYNQGKLGDGTKKS--------SNSPVLIDGIYD 284
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRLRPKII-----E 112
V+ V G +H +AL ED ++WG N +GQLG G + P + E
Sbjct: 285 VIAVDSGKQHTLALK--------EDGTVWAWGTNTHGQLGYGTPVNYSMTPNQVFLESTE 336
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPE 172
NQ + + G FH+ + + W++G NG+LG G ++ + P
Sbjct: 337 PLNQ-----IVAIDAGGFHSHAIKK--------DGTVWSWGFNSNGELGLGHSKKQMYPA 383
Query: 173 QVKEL 177
+++ +
Sbjct: 384 KIETI 388
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 21/119 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSPVWDFHGHT--- 58
+ +V +G +LA+ G +W WG ++T G G+ +++ +P F T
Sbjct: 285 VIAVDSGKQHTLALKEDGTVWAWG------TNTHGQLGYGTPVNYSMTPNQVFLESTEPL 338
Query: 59 --VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
+V + G H A+ +D +SWG N+NG+LGLG + ++ P IET N
Sbjct: 339 NQIVAIDAGGFHSHAIK--------KDGTVWSWGFNSNGELGLGHSKKQMYPAKIETIN 389
>gi|426231463|ref|XP_004009758.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Ovis aries]
Length = 1050
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIVHVACGESHSLALSDQGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG + S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGRNSHGQLGLGKEFPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVVAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 115/278 (41%), Gaps = 66/278 (23%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + GAN GQLG +RE +I +Q
Sbjct: 35 SVKEVACGGNHSVFLLEDGEVY--------TCGANTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ + + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IVHVACGESHSLALSDQGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG AS R + + I
Sbjct: 134 LNQQT-ILQVSCGNWHCLALAADGQFFTWGRNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192
Query: 231 ILISGNGPH-------GPKF-----------------------------QDPVQVACGAA 254
+ G H G F Q V ++CG
Sbjct: 193 AQVVAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEE 252
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
HT ++T G ++++G G G LG D P VL
Sbjct: 253 HTAVLTKSG-GVFTFGAGSCGQLGHDSMNDEVNPRRVL 289
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVVAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|149043903|gb|EDL97354.1| rCG61079, isoform CRA_c [Rattus norvegicus]
Length = 928
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIECQKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 130/297 (43%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLQGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG + + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIECQKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 103/252 (40%), Gaps = 68/252 (26%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL----------- 135
WG + GQLGLG D E L P+ + F V +V CG HT +
Sbjct: 4 WGNASYGQLGLGGIDEEIVLEPRKSDFFVNKK---VRDVGCGLRHTVFVLDDGTVYTCGC 60
Query: 136 ---------THRKRPNDML----------------------ESMCWTFGLGENGQLG-HG 163
RK+P ++ + + +GL +GQLG G
Sbjct: 61 NDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLQG 120
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASL 219
+ + VP +K L + +V V CG +H+ +S A +V+ WG K GLG+
Sbjct: 121 SEECIRVPRNIKSLSD-IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGI------ 173
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
E SP LI G F +QVA G AH+ ++T G ++ WGR + G LG
Sbjct: 174 ---ECQKQTSPQLIK--SLLGIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGL 224
Query: 280 GKTIDFFAPAIV 291
D + P ++
Sbjct: 225 NDENDRYVPNLL 236
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASYGQLGLGGIDEEIVLEPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|356501809|ref|XP_003519716.1| PREDICTED: uncharacterized protein LOC100778984 [Glycine max]
Length = 1122
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 138/300 (46%), Gaps = 40/300 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL-----VSSFTPSPVW-DF 54
++ + V G S A+ ++G L+ WG+ T G L VS + P V
Sbjct: 354 ITNVTFVACGEYHSCAVSSSGDLFTWGD------GTHGAGLLGHGTDVSYWIPKRVSGPL 407
Query: 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
G VV VACG+ H S G+ ++ G G LG GDR+S PK ++
Sbjct: 408 EGLQVVSVACGTWHSALATSNGK--------LFTIGDGRFGVLGHGDRDSVAYPKEVQLL 459
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPN--DMLESMCWTFGLGENGQLGHGTTQSALVPE 172
S +V CG +H+A + P+ + +T+G G+ +LGH ++ L P
Sbjct: 460 ---SGHKAIKVACGVWHSAAIIEVMGPSGSNTSAKRLFTWGDGDQYRLGHVNKETYLEPT 516
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG-MEKGLGLCPNASLTRNEAGDAISPI 231
V + +Y + V CG T ++++G V++ G G PN+ D PI
Sbjct: 517 CVAAVAEYNFH-QVACGYTMTVALTTSGHVFTMGGTAYGQLGNPNS--------DGKVPI 567
Query: 232 LISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
L+ G +F + +++CGA H ++T +L++WGRG +G LG G T D +P +V
Sbjct: 568 LVRGKLVG--EFVE--EISCGANHVAVLTSRS-ELYTWGRGANGRLGHGDTDDQKSPTMV 622
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 128/288 (44%), Gaps = 41/288 (14%)
Query: 17 IDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTVVKVACGSEHVVAL 72
I++ G +++WG + +S++G SL S TP P+ V ++ G H+ +
Sbjct: 259 IESLGDVYIWGEVWVDGNSSDGLGSLASCKTDVLTPKPLESDVVLDVHQIGPGDRHIALV 318
Query: 73 VSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHT 132
GE + +WG ++ G+LG G + RP ++E+ + V V CG +H+
Sbjct: 319 TRQGEVF--------TWGEDSGGRLGHGFEKDFGRPHLVESL---AITNVTFVACGEYHS 367
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFH 192
++ D+ W G G LGHGT S +P++V + + +VSV CG +H
Sbjct: 368 CAVS---SSGDLF---TWGDGTHGAGLLGHGTDVSYWIPKRVSGPLEGLQVVSVACGTWH 421
Query: 193 TSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACG 252
+++ +S G +++ G + G+ + R+ L+SG+ ++VACG
Sbjct: 422 SALATSNGKLFTIG-DGRFGVLGHGD--RDSVAYPKEVQLLSGH--------KAIKVACG 470
Query: 253 AAHTVLVTD---------DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
H+ + + +L++WG G LG + P V
Sbjct: 471 VWHSAAIIEVMGPSGSNTSAKRLFTWGDGDQYRLGHVNKETYLEPTCV 518
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 31/182 (17%)
Query: 19 NAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGET 78
+A L+ WG+ D G + + P+ V + +VACG VAL ++G
Sbjct: 489 SAKRLFTWGDG---DQYRLGHVNKETYLEPTCVAAVAEYNFHQVACGYTMTVALTTSGHV 545
Query: 79 YKGEDLVCYSWGANNNGQLGLGDRESRL----RPKIIETFNQDSPWAVYEVTCGSFHTAL 134
+ + G GQLG + + ++ R K++ F V E++CG+ H A+
Sbjct: 546 F--------TMGGTAYGQLGNPNSDGKVPILVRGKLVGEF-------VEEISCGANHVAV 590
Query: 135 LTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTS 194
LT R S +T+G G NG+LGHG T P V+ L ++ ++ CG TS
Sbjct: 591 LTSR--------SELYTWGRGANGRLGHGDTDDQKSPTMVEALKDR-HIKNISCGSTFTS 641
Query: 195 VV 196
+
Sbjct: 642 CI 643
>gi|357470133|ref|XP_003605351.1| Serine/threonine protein kinase Nek9 [Medicago truncatula]
gi|355506406|gb|AES87548.1| Serine/threonine protein kinase Nek9 [Medicago truncatula]
Length = 1096
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 133/296 (44%), Gaps = 42/296 (14%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDF-HGHTVVKVACG 65
V G + A+ + WG+ + G + +S + P V F G VV VACG
Sbjct: 148 VACGEFHTSAVSKCDNFFTWGD-GTHNVGLLGHGNEISHWIPKSVNGFLDGLRVVSVACG 206
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S H S G+ +++G G LG GD+ES + PK ++ S +V
Sbjct: 207 SWHSALATSNGK--------LFTFGDGTFGVLGHGDQESVMYPKEVQLL---SGLKTVKV 255
Query: 126 TCGSFHTALLTHRKRPNDMLES--MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CG +HTA + + S +T+G G+ +LGHG L P +V L +Y +
Sbjct: 256 ACGVWHTAAIIEVAFQSGSNASSWKLFTWGDGDKFRLGHGNKDMYLKPTRVSPLIEYNFQ 315
Query: 184 VSVDCGLFHTSVVSSAGDVWSWG-MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+ CG T ++++G V++ G E G PNA AG P L+
Sbjct: 316 -QIACGHTMTVALTTSGHVFTMGSTENGQLGNPNA------AGKV--PTLV--------- 357
Query: 243 FQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
QD + +++CGA H VT +L++WG+G +G LG G T D +P +VL
Sbjct: 358 -QDKLLGEFIEEISCGAHHVAAVTSRS-ELYTWGKGSNGRLGHGDTDDRKSPTLVL 411
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 131/308 (42%), Gaps = 55/308 (17%)
Query: 10 GGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHV 69
GG + I++ G +++WG + +G S TP + V + G+ H+
Sbjct: 49 GGSEADDIESKGDVYIWG-----EVFADGFPSKTDVLTPRLLESTVVLDVRDIVSGTHHL 103
Query: 70 VALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE--VTC 127
+ G+ + +WG + G+LG G + +P ++E P V V C
Sbjct: 104 AIVSREGKVF--------TWGEESGGRLGHGIDKDFGKPHLVEF-----PDVVTLDIVAC 150
Query: 128 GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVD 187
G FHT+ ++ + ++ W G G LGHG S +P+ V + +VSV
Sbjct: 151 GEFHTSAVS---KCDNFF---TWGDGTHNVGLLGHGNEISHWIPKSVNGFLDGLRVVSVA 204
Query: 188 CGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPI---LISGNGPHGPKFQ 244
CG +H+++ +S G ++++G + G+ L + + P L+SG
Sbjct: 205 CGSWHSALATSNGKLFTFG-DGTFGV-----LGHGDQESVMYPKEVQLLSG--------L 250
Query: 245 DPVQVACGAAHTVLVTDDGY---------KLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
V+VACG HT + + + KL++WG G LG G + P V P
Sbjct: 251 KTVKVACGVWHTAAIIEVAFQSGSNASSWKLFTWGDGDKFRLGHGNKDMYLKPTRV--SP 308
Query: 296 LTE-EFKQ 302
L E F+Q
Sbjct: 309 LIEYNFQQ 316
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 28/153 (18%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG----LGDRE 103
P+ V + ++ACG VAL ++G + + G+ NGQLG G
Sbjct: 303 PTRVSPLIEYNFQQIACGHTMTVALTTSGHVF--------TMGSTENGQLGNPNAAGKVP 354
Query: 104 SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
+ ++ K++ F + E++CG+ H A +T R S +T+G G NG+LGHG
Sbjct: 355 TLVQDKLLGEF-------IEEISCGAHHVAAVTSR--------SELYTWGKGSNGRLGHG 399
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
T P V L +L ++ CG TS V
Sbjct: 400 DTDDRKSPTLVLALKDR-HLKNISCGSNFTSCV 431
>gi|313236983|emb|CBY12230.1| unnamed protein product [Oikopleura dioica]
Length = 1048
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 125/283 (44%), Gaps = 46/283 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSP-VWDFHGH-TVV 60
+I V AG S+AI +G L+ WG S G P + D H +VV
Sbjct: 82 EIFHVAAGDFFSIAIAESGLLFGWGR------SLNGELMCKQDSLHEPKLLDKIMHWSVV 135
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR-LRPKIIETFNQDSP 119
+VACG++H +AL G SWG+N GQLGLG E L P II + N
Sbjct: 136 QVACGAQHCIALTEEG--------TILSWGSNTQGQLGLGSSEIEFLEPTIIASLN---A 184
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ + ++ G++H+ +L+ P+ L +T+G GQLGHG + S ++ + +
Sbjct: 185 FPISQICAGAYHSGVLS----PSGTL----FTWGKNNWGQLGHGNSDSFQSSPRLVKTLR 236
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILISGN 236
+ +V V G H+ + G V+SWG N L N + P + + G
Sbjct: 237 HQEVVFVAMGEEHSVCRTRNGGVFSWGHGG------NGQLGHNSMANVTQPKKIMELMGT 290
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
Q+ CG HT+ +TD KL +G + LGT
Sbjct: 291 --------TVCQICCGRRHTISLTDK-RKLLGFGLNSNNQLGT 324
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 89/214 (41%), Gaps = 45/214 (21%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y WG N+ GQLGLG + P I D+ +V + G HT LT ++
Sbjct: 2 YGWGKNDYGQLGLGSENMLISCPSPI-----DANQSVISIASGLRHTVYLTSTRK----- 51
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSW 205
++ G E GQLG +Q P V + V G F + ++ +G ++ W
Sbjct: 52 ---VYSCGSNEFGQLGQQKSQCR--PSLVTGFGAE-EIFHVAAGDFFSIAIAESGLLFGW 105
Query: 206 GME-KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP------VQVACGAAHTVL 258
G G +C SL H PK D VQVACGA H +
Sbjct: 106 GRSLNGELMCKQDSL-------------------HEPKLLDKIMHWSVVQVACGAQHCIA 146
Query: 259 VTDDGYKLWSWGRGRSGVLGTGKT-IDFFAPAIV 291
+T++G + SWG G LG G + I+F P I+
Sbjct: 147 LTEEG-TILSWGSNTQGQLGLGSSEIEFLEPTII 179
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 107/247 (43%), Gaps = 35/247 (14%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
PS V F + VA G +A+ +G + + WG + NG+L + ++S
Sbjct: 72 PSLVTGFGAEEIFHVAAGDFFSIAIAESG--------LLFGWGRSLNGEL-MCKQDSLHE 122
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
PK+++ W+V +V CG+ H LT E ++G GQLG G+++
Sbjct: 123 PKLLDKIMH---WSVVQVACGAQHCIALTE--------EGTILSWGSNTQGQLGLGSSEI 171
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAG 225
+ + + + G +H+ V+S +G +++WG LG + S
Sbjct: 172 EFLEPTIIASLNAFPISQICAGAYHSGVLSPSGTLFTWGKNNWGQLGHGNSDSFQS---- 227
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
SP L+ + Q+ V VA G H+V T +G ++SWG G +G LG +
Sbjct: 228 ---SPRLVKT-----LRHQEVVFVAMGEEHSVCRTRNG-GVFSWGHGGNGQLGHNSMANV 278
Query: 286 FAPAIVL 292
P ++
Sbjct: 279 TQPKKIM 285
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 72/174 (41%), Gaps = 30/174 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSP--VWDFHGHT 58
+SQIC AG S + +G L+ WG ++ + G SF SP V
Sbjct: 187 ISQIC---AGAYHSGVLSPSGTLFTWGK----NNWGQLGHGNSDSFQSSPRLVKTLRHQE 239
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQD 117
VV VA G EH V G + SWG NGQLG + +PK I+E
Sbjct: 240 VVFVAMGEEHSVCRTRNGGVF--------SWGHGGNGQLGHNSMANVTQPKKIMELMGT- 290
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
V ++ CG HT LT +++ FGL N QLG SA +P
Sbjct: 291 ---TVCQICCGRRHTISLTDKRK--------LLGFGLNSNNQLGTHNDTSARLP 333
>gi|115374127|ref|ZP_01461415.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
gi|115368903|gb|EAU67850.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
Length = 479
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 118/278 (42%), Gaps = 43/278 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + +V G M SLA+ G +W WG D G + V S TP PV VV
Sbjct: 219 LQGVVAVAGGYMHSLALCADGTVWAWG---FNDYGQLGNGTTVHSPTPVPVPGLS--QVV 273
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H +AL + D ++WG N GQLG R +P +E +
Sbjct: 274 SVAAGGFHSLALCA--------DGTVWAWGNNGFGQLGEAVSTQRTKPGRVEGLRE---- 321
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V G +H+ + R L W++G +GQLG+G+ S+ P V+ L
Sbjct: 322 -VVAVAGGFYHSLAV----RAGGSL----WSWGNNYSGQLGNGSFSSSARPAPVQGLGA- 371
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ SV G H+ V + G VW+WG + L A + +P+ +
Sbjct: 372 --VTSVAAGGMHSVAVQADGTVWAWGRNE------EGQLGHERAPERATPVRV------- 416
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
P Q V VA G H++ V G LW+WG G LG
Sbjct: 417 PGLQGEVAVAAGFYHSLSVQAGG-SLWAWGLNDFGQLG 453
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 119/291 (40%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S+ +V AGG +LA+ G +W WGN G S TP V G VV
Sbjct: 169 LSRAVAVAAGGSHALALCADGTVWAWGNN---GYGQLGNGSTAHRATPVQVPGLQG--VV 223
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H +AL + D ++WG N+ GQLG G P + +Q
Sbjct: 224 AVAGGYMHSLALCA--------DGTVWAWGFNDYGQLGNGTTVHSPTPVPVPGLSQ---- 271
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V G FH+ L + W +G GQLG + P +V+ L +
Sbjct: 272 -VVSVAAGGFHSLALC--------ADGTVWAWGNNGFGQLGEAVSTQRTKPGRVEGLRE- 321
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V+V G +H+ V + G +WSWG G N S + + P + G G
Sbjct: 322 --VVAVAGGFYHSLAVRAGGSLWSWGNNYS-GQLGNGSFS-----SSARPAPVQGLG--- 370
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
VA G H+V V DG +W+WGR G LG + + P V
Sbjct: 371 ----AVTSVAAGGMHSVAVQADG-TVWAWGRNEEGQLGHERAPERATPVRV 416
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 114/288 (39%), Gaps = 43/288 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ +V G SLA+ G +W C + G + + P PV V VA
Sbjct: 122 VRAVAGGYQYSLALHADGTVWA---CGSNSAGQLGNGTTAARSAPRPVPGLS--RAVAVA 176
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G H +AL + D ++WG N GQLG G R P + V
Sbjct: 177 AGGSHALALCA--------DGTVWAWGNNGYGQLGNGSTAHRATPVQVPGLQ-----GVV 223
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
V G H+ L + W +G + GQLG+GTT + P V L Q +
Sbjct: 224 AVAGGYMHSLALC--------ADGTVWAWGFNDYGQLGNGTTVHSPTPVPVPGLSQ---V 272
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
VSV G FH+ + + G VW+WG G G A T+ P + G
Sbjct: 273 VSVAAGGFHSLALCADGTVWAWG-NNGFGQLGEAVSTQR-----TKPGRVEG-------L 319
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ V VA G H++ V G LWSWG SG LG G PA V
Sbjct: 320 REVVAVAGGFYHSLAVRAGG-SLWSWGNNYSGQLGNGSFSSSARPAPV 366
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 70/171 (40%), Gaps = 28/171 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ ++ +V G SLA+ G+LW WGN S G S SS P+PV V
Sbjct: 319 LREVVAVAGGFYHSLAVRAGGSLWSWGNN---YSGQLGNGSFSSSARPAPVQGLG--AVT 373
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H VA+ + D ++WG N GQLG R P + +
Sbjct: 374 SVAAGGMHSVAVQA--------DGTVWAWGRNEEGQLGHERAPERATPVRVPGLQGE--- 422
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
V G +H+ + W +GL + GQLG +++ L+P
Sbjct: 423 --VAVAAGFYHSLSV--------QAGGSLWAWGLNDFGQLGD--SEAPLMP 461
>gi|7657152|ref|NP_055421.1| probable E3 ubiquitin-protein ligase HERC3 isoform 1 [Homo sapiens]
gi|397480079|ref|XP_003811323.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 1
[Pan paniscus]
gi|426344933|ref|XP_004039158.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 1
[Gorilla gorilla gorilla]
gi|2495699|sp|Q15034.1|HERC3_HUMAN RecName: Full=Probable E3 ubiquitin-protein ligase HERC3; AltName:
Full=HECT domain and RCC1-like domain-containing protein
3
gi|119626429|gb|EAX06024.1| hect domain and RLD 3 [Homo sapiens]
gi|158261003|dbj|BAF82679.1| unnamed protein product [Homo sapiens]
gi|168274306|dbj|BAG09573.1| E3 ubiquitin-protein ligase HERC3 [synthetic construct]
gi|187252515|gb|AAI66672.1| Hect domain and RLD 3 [synthetic construct]
gi|410211922|gb|JAA03180.1| hect domain and RLD 3 [Pan troglodytes]
gi|410261200|gb|JAA18566.1| hect domain and RLD 3 [Pan troglodytes]
gi|410295580|gb|JAA26390.1| hect domain and RLD 3 [Pan troglodytes]
gi|410339519|gb|JAA38706.1| hect domain and RLD 3 [Pan troglodytes]
Length = 1050
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIIHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG + S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 108/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IIHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG AS R + + I P
Sbjct: 134 LNQQT-ILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEKDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|386780812|ref|NP_001248295.1| probable E3 ubiquitin-protein ligase HERC3 [Macaca mulatta]
gi|355687450|gb|EHH26034.1| Putative E3 ubiquitin-protein ligase HERC3 [Macaca mulatta]
gi|355749437|gb|EHH53836.1| Putative E3 ubiquitin-protein ligase HERC3 [Macaca fascicularis]
gi|380817668|gb|AFE80708.1| putative E3 ubiquitin-protein ligase HERC3 [Macaca mulatta]
gi|383408291|gb|AFH27359.1| putative E3 ubiquitin-protein ligase HERC3 [Macaca mulatta]
Length = 1050
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIIHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG + S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 108/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IIHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG AS R + + I P
Sbjct: 134 LNQQT-ILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEKDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|627469|pir||B38919 hypothetical protein 2 - human (fragment)
gi|40788957|dbj|BAA04945.2| KIAA0032 [Homo sapiens]
Length = 1054
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 89 HIIHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 142
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG + S+ P+ + + +
Sbjct: 143 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQASPQRVRSL-EG 193
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 194 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-L 242
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 243 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 296
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 297 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 345
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 108/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 39 SVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLG-HEREGNKPEQIGALADQH 89
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 90 ----IIHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 137
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG AS R + + I P
Sbjct: 138 LNQQT-ILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGI-P 195
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 196 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEKDRESPCH 239
Query: 291 V 291
V
Sbjct: 240 V 240
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 196 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 252
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 253 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 300
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 301 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 346
>gi|402869928|ref|XP_003898995.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 1
[Papio anubis]
Length = 1050
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIIHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG + S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 108/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IIHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG AS R + + I P
Sbjct: 134 LNQQT-ILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEKDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|332233510|ref|XP_003265945.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 1
[Nomascus leucogenys]
Length = 1050
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIIHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG + S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 108/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IIHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG AS R + + I P
Sbjct: 134 LNQQT-ILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEKDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|310825568|ref|YP_003957926.1| bnr repeat domain-containing protein [Stigmatella aurantiaca
DW4/3-1]
gi|309398640|gb|ADO76099.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
Length = 482
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 118/278 (42%), Gaps = 43/278 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + +V G M SLA+ G +W WG D G + V S TP PV VV
Sbjct: 222 LQGVVAVAGGYMHSLALCADGTVWAWG---FNDYGQLGNGTTVHSPTPVPVPGLS--QVV 276
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H +AL + D ++WG N GQLG R +P +E +
Sbjct: 277 SVAAGGFHSLALCA--------DGTVWAWGNNGFGQLGEAVSTQRTKPGRVEGLRE---- 324
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V G +H+ + R L W++G +GQLG+G+ S+ P V+ L
Sbjct: 325 -VVAVAGGFYHSLAV----RAGGSL----WSWGNNYSGQLGNGSFSSSARPAPVQGLGA- 374
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ SV G H+ V + G VW+WG + L A + +P+ +
Sbjct: 375 --VTSVAAGGMHSVAVQADGTVWAWGRNE------EGQLGHERAPERATPVRV------- 419
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
P Q V VA G H++ V G LW+WG G LG
Sbjct: 420 PGLQGEVAVAAGFYHSLSVQAGG-SLWAWGLNDFGQLG 456
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 119/291 (40%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S+ +V AGG +LA+ G +W WGN G S TP V G VV
Sbjct: 172 LSRAVAVAAGGSHALALCADGTVWAWGNN---GYGQLGNGSTAHRATPVQVPGLQG--VV 226
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H +AL + D ++WG N+ GQLG G P + +Q
Sbjct: 227 AVAGGYMHSLALCA--------DGTVWAWGFNDYGQLGNGTTVHSPTPVPVPGLSQ---- 274
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V G FH+ L + W +G GQLG + P +V+ L +
Sbjct: 275 -VVSVAAGGFHSLALC--------ADGTVWAWGNNGFGQLGEAVSTQRTKPGRVEGLRE- 324
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V+V G +H+ V + G +WSWG G N S + + P + G G
Sbjct: 325 --VVAVAGGFYHSLAVRAGGSLWSWGNNYS-GQLGNGSFS-----SSARPAPVQGLG--- 373
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
VA G H+V V DG +W+WGR G LG + + P V
Sbjct: 374 ----AVTSVAAGGMHSVAVQADG-TVWAWGRNEEGQLGHERAPERATPVRV 419
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 114/288 (39%), Gaps = 43/288 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ +V G SLA+ G +W C + G + + P PV V VA
Sbjct: 125 VRAVAGGYQYSLALHADGTVWA---CGSNSAGQLGNGTTAARSAPRPVPGLS--RAVAVA 179
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G H +AL + D ++WG N GQLG G R P + V
Sbjct: 180 AGGSHALALCA--------DGTVWAWGNNGYGQLGNGSTAHRATPVQVPGLQ-----GVV 226
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
V G H+ L + W +G + GQLG+GTT + P V L Q +
Sbjct: 227 AVAGGYMHSLALC--------ADGTVWAWGFNDYGQLGNGTTVHSPTPVPVPGLSQ---V 275
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
VSV G FH+ + + G VW+WG G G A T+ P + G
Sbjct: 276 VSVAAGGFHSLALCADGTVWAWG-NNGFGQLGEAVSTQR-----TKPGRVEG-------L 322
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ V VA G H++ V G LWSWG SG LG G PA V
Sbjct: 323 REVVAVAGGFYHSLAVRAGG-SLWSWGNNYSGQLGNGSFSSSARPAPV 369
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 70/171 (40%), Gaps = 28/171 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ ++ +V G SLA+ G+LW WGN S G S SS P+PV V
Sbjct: 322 LREVVAVAGGFYHSLAVRAGGSLWSWGNN---YSGQLGNGSFSSSARPAPVQGLG--AVT 376
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H VA+ + D ++WG N GQLG R P + +
Sbjct: 377 SVAAGGMHSVAVQA--------DGTVWAWGRNEEGQLGHERAPERATPVRVPGLQGE--- 425
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
V G +H+ + W +GL + GQLG +++ L+P
Sbjct: 426 --VAVAAGFYHSLSV--------QAGGSLWAWGLNDFGQLGD--SEAPLMP 464
>gi|403263478|ref|XP_003924058.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Saimiri
boliviensis boliviensis]
Length = 1050
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 139/297 (46%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIIHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 108/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
TV +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 TVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IIHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG AS R + + I P
Sbjct: 134 LNQQT-ILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEKDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|50511409|gb|AAT77332.1| unknown prtein [Oryza sativa Japonica Group]
Length = 901
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 138/306 (45%), Gaps = 36/306 (11%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ +G L+ WGN +S G + VS + P V G V ++CG
Sbjct: 367 VACGEYHTCAVTLSGDLYTWGN-GTSNSGLLGHGNEVSHWVPKRVNGPLEGIHVSAISCG 425
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ + ++G + G LG GDR+S P+ +E+
Sbjct: 426 PWHTAIVTSAGQLF--------TFGDGSFGVLGHGDRQSLSVPREVESLKG---LRTVRA 474
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ G+LGHG + LVP V L +
Sbjct: 475 ACGVWHTAAVVEVMVGNSSSSNCSSGKIFTWGDGDKGRLGHGDKDTRLVPTCVAALVEPN 534
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ + CG T ++++G V++ G P N D + P+ + G
Sbjct: 535 F-CQIACGHCMTVALTTSGHVYTMGS-------PVYGQLGNPQADGMLPVRVEGK--LHK 584
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFK 301
F + +++CGA H ++T ++++WG+G +G LG G T D +P +V E K
Sbjct: 585 NFVE--EISCGAYHVAVLTSR-TEVYTWGKGANGRLGHGDTDDRSSPTLV------EALK 635
Query: 302 QDELNT 307
++ T
Sbjct: 636 DKQVRT 641
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 102/244 (41%), Gaps = 39/244 (15%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V ++CG H + GE Y SWG + G+LG G +PK+I+
Sbjct: 312 VQNISCGGRHATLVTKQGEIY--------SWGEESGGRLGHGVDCDVPQPKLIDALAN-- 361
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ V CG +HT +T D+ W G +G LGHG S VP++V
Sbjct: 362 -MNIELVACGEYHTCAVT---LSGDLYT---WGNGTSNSGLLGHGNEVSHWVPKRVNGPL 414
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +++ ++ CG +HT++V+SAG ++++G + G+ + + +
Sbjct: 415 EGIHVSAISCGPWHTAIVTSAGQLFTFG-DGSFGVLGHGDRQSLSVPREVESL------- 466
Query: 239 HGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGKTIDFFA 287
K V+ ACG HT V + K+++WG G G LG G
Sbjct: 467 ---KGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKIFTWGDGDKGRLGHGDKDTRLV 523
Query: 288 PAIV 291
P V
Sbjct: 524 PTCV 527
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80
G ++ WG+ D G + P+ V ++ACG VAL ++G Y
Sbjct: 500 GKIFTWGD---GDKGRLGHGDKDTRLVPTCVAALVEPNFCQIACGHCMTVALTTSGHVY- 555
Query: 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKR 140
+ G+ GQLG + L ++ +++ V E++CG++H A+LT R
Sbjct: 556 -------TMGSPVYGQLGNPQADGMLPVRVEGKLHKN---FVEEISCGAYHVAVLTSR-- 603
Query: 141 PNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
+ +T+G G NG+LGHG T P V+ L + +V CG+ T+ +
Sbjct: 604 ------TEVYTWGKGANGRLGHGDTDDRSSPTLVEALKDK-QVRTVVCGINFTAAI 652
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 16/148 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVK 61
C + G M++A+ +G ++ G+ P+ + G P V H + V +
Sbjct: 534 NFCQIACGHCMTVALTTSGHVYTMGS-PV---YGQLGNPQADGMLPVRVEGKLHKNFVEE 589
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
++CG+ HV L S E Y +WG NG+LG GD + R P ++E
Sbjct: 590 ISCGAYHVAVLTSRTEVY--------TWGKGANGRLGHGDTDDRSSPTLVEALKDKQ--- 638
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMC 149
V V CG TA + K + + +SMC
Sbjct: 639 VRTVVCGINFTAAICIHKWVSGVDQSMC 666
>gi|328701601|ref|XP_001942852.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC1
[Acyrthosiphon pisum]
Length = 4257
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 132/283 (46%), Gaps = 36/283 (12%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTV 59
+ Q+ S K SLA+ + G ++ WG+ D G + + P + F G +
Sbjct: 425 IKQVSSSKGCDGHSLALSDTGEVYSWGD---GDYGKLGHGDVATHKEPKLIQGPFIGKVI 481
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V+ G H A+ S G+ Y+WG ++G+LG GD R P ++++ + D P
Sbjct: 482 ELVSAGYRHSAAVTSDGQ--------LYTWGEGDHGRLGHGDCNPRFIPTLVKSLS-DMP 532
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V V CGS HT L + N + W+FG G+NG+LGHG T P++++ L
Sbjct: 533 --VGYVACGSTHT--LACSRDGNTV-----WSFGSGDNGKLGHGNTIRLYKPQKIEGLRH 583
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
Y + V G+ + ++ G+V++WG LG C ++ +T SP ++
Sbjct: 584 Y-KIKKVAAGIHFSVALTCTGEVFTWGQGSNLG-CGSSEIT------LFSPAVVEDLMQ- 634
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
Q + ++ G +H + +T + +++WG G G G +
Sbjct: 635 ----QMIIDISVGDSHCLALTRNC-AVYAWGSNGKGQCGQGHS 672
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 123/292 (42%), Gaps = 38/292 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++Q+ + SLA+ G ++ WG+ D G + P + + V+
Sbjct: 3480 ITQVSTSIGSDGHSLALTETGEVFSWGD---GDFGKLGHGNNERQRKPKLIESLYDVVVI 3536
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP-KIIETFNQDSP 119
+VACG +H L GE Y +G+ +G+LGLG ++ RP KI+
Sbjct: 3537 QVACGHKHSAVLSQDGEVY--------VFGSAEHGKLGLGGHINKKRPTKIV----HKGF 3584
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ + CG HT + E++ W FG GE G+LG G+ + VP+++ L
Sbjct: 3585 LNIKYIACGQNHTICIG---------ENVVWAFGEGEGGKLGIGSKKDIYVPQEIITL-N 3634
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ CG T +S G+++S G S +A D + +
Sbjct: 3635 GKNIKKAYCGNGFTMFLSEDGELYSCG-----------SDNLQDATDVLYTEKLIPEKIF 3683
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ Q VA G H +++T G+ +W+WG G+LG G + P I+
Sbjct: 3684 EFQGQIVTDVATGPDHVLVLTARGH-VWAWGNNCEGILGFGHDLPVQKPMII 3734
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 93/203 (45%), Gaps = 29/203 (14%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G N+ G+LGLG+ ++ PK I N C AL +D E
Sbjct: 398 GKNSYGRLGLGNSSNQPVPKRI-NINCKIKQVSSSKGCDGHSLAL-------SDTGEVYS 449
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVK--ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM 207
W G G+ G+LGHG + P+ ++ + + + LVS G H++ V+S G +++WG
Sbjct: 450 W--GDGDYGKLGHGDVATHKEPKLIQGPFIGKVIELVSA--GYRHSAAVTSDGQLYTWG- 504
Query: 208 EKGLGLCPNASLTRNEAGDAISPILISG--NGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
+G + L + P L+ + P G VACG+ HT+ + DG
Sbjct: 505 -EG----DHGRLGHGDCNPRFIPTLVKSLSDMPVG-------YVACGSTHTLACSRDGNT 552
Query: 266 LWSWGRGRSGVLGTGKTIDFFAP 288
+WS+G G +G LG G TI + P
Sbjct: 553 VWSFGSGDNGKLGHGNTIRLYKP 575
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 111/271 (40%), Gaps = 36/271 (13%)
Query: 24 WMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGED 83
++WGN ++ ++P + +F ++ CG L S G
Sbjct: 3395 YLWGNGRNGQLGDTAVGQCINIWSPIKIQNFK--IAQRIVCGQNCTFVLTSQG------- 3445
Query: 84 LVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPND 143
S G N G+LG G +S +I V H+ LT
Sbjct: 3446 -TVLSCGEGNYGRLGHGHSDSLPNLTMISALQGFVITQVSTSIGSDGHSLALTETGE--- 3501
Query: 144 MLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVW 203
+++G G+ G+LGHG + P+ ++ L V ++ V CG H++V+S G+V+
Sbjct: 3502 -----VFSWGDGDFGKLGHGNNERQRKPKLIESLYDVV-VIQVACGHKHSAVLSQDGEVY 3555
Query: 204 SWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+G E G LGL + + R P I G K+ +ACG HT+ + +
Sbjct: 3556 VFGSAEHGKLGLGGHINKKR--------PTKIVHKGFLNIKY-----IACGQNHTICIGE 3602
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ +W++G G G LG G D + P ++
Sbjct: 3603 N--VVWAFGEGEGGKLGIGSKKDIYVPQEII 3631
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 89/206 (43%), Gaps = 26/206 (12%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
+ WG+N++ Q G E P+++ + + V +V G + T ++ +
Sbjct: 345 FMWGSNSSNQHAEGATEVTDIPRLVRSLSD-----VQQVEAGQYCTFIIDTKG-----CV 394
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
S C G G+LG G + + VP+++ + + S H+ +S G+V+SWG
Sbjct: 395 SAC---GKNSYGRLGLGNSSNQPVPKRININCKIKQVSSSKGCDGHSLALSDTGEVYSWG 451
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ-VACGAAHTVLVTDDGYK 265
+ G L + P LI GP ++ V+ G H+ VT DG +
Sbjct: 452 -DGDYG-----KLGHGDVATHKEPKLI-----QGPFIGKVIELVSAGYRHSAAVTSDG-Q 499
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIV 291
L++WG G G LG G F P +V
Sbjct: 500 LYTWGEGDHGRLGHGDCNPRFIPTLV 525
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 14/111 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V AG S+A+ G ++ WG S+ G S ++ F+P+ V D ++ +
Sbjct: 585 KIKKVAAGIHFSVALTCTGEVFTWGQ----GSNLGCGSSEITLFSPAVVEDLMQQMIIDI 640
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL-RP-KII 111
+ G H +AL + Y+WG+N GQ G G S + RP K+I
Sbjct: 641 SVGDSHCLALT--------RNCAVYAWGSNGKGQCGQGHSTSPVSRPSKVI 683
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
Query: 10 GGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHV 69
G ++ + G L+ G+ L D++ P +++F G V VA G +HV
Sbjct: 3644 GNGFTMFLSEDGELYSCGSDNLQDAT---DVLYTEKLIPEKIFEFQGQIVTDVATGPDHV 3700
Query: 70 VALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
+ L + G + +WG N G LG G +P II+
Sbjct: 3701 LVLTARGHVW--------AWGNNCEGILGFGHDLPVQKPMIIQIL 3737
>gi|222632434|gb|EEE64566.1| hypothetical protein OsJ_19418 [Oryza sativa Japonica Group]
Length = 1002
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 134/304 (44%), Gaps = 48/304 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF----SLVSSFTPSPVWD-FH 55
+S + + G + + +G L+ WG D S G + VS + P V
Sbjct: 276 VSNVEYIACGEFHTCVVTASGDLYDWG-----DGSYNAGLLGHGTGVSHWLPKRVSGPLE 330
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G V+ VACGS H +S+G+ + ++G G LG GDRES PK +E
Sbjct: 331 GLQVLSVACGSWHSALTMSSGKLF--------TFGDGTFGSLGHGDRESVAYPKEVEAL- 381
Query: 116 QDSPWAVYEVTCGSFHTALLTH--RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
S + +V CG +H+A + + + + +T+G G+ +LGHG ++ LVP
Sbjct: 382 --SGFRAMKVACGVWHSAAIVEISGQASTNAMSRKLFTWGDGDKNRLGHGDKEAKLVPTC 439
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
V+ L + + V CG T ++++G V++ G N N D P ++
Sbjct: 440 VQALVDHNFH-QVACGHSMTVALATSGHVFTMGSS-------NNGQLGNPKADGKQPCMV 491
Query: 234 SGNGPHGPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
QD + +++CG+ H +T ++++WG G +G LG G D
Sbjct: 492 ----------QDKLGNELVEEISCGSNHVAALTSRS-EVYTWGMGANGRLGHGSVEDKKK 540
Query: 288 PAIV 291
P +V
Sbjct: 541 PTLV 544
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 41/242 (16%)
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++ACGS H+ GE + +WG G+LG G RPK++E+ +
Sbjct: 229 QIACGSRHIGLTTRQGEVF--------TWGEELGGRLGHGTDTDICRPKLVESLAVSN-- 278
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + CG FHT ++T D+ + W G G LGHGT S +P++V +
Sbjct: 279 -VEYIACGEFHTCVVT---ASGDLYD---WGDGSYNAGLLGHGTGVSHWLPKRVSGPLEG 331
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ ++SV CG +H+++ S+G ++++ G LG S+ + +A+S
Sbjct: 332 LQVLSVACGSWHSALTMSSGKLFTFGDGTFGSLGHGDRESVAYPKEVEALSGF------- 384
Query: 239 HGPKFQDPVQVACGAAHTVLVTDD---------GYKLWSWGRGRSGVLGTGKTIDFFAPA 289
++VACG H+ + + KL++WG G LG G P
Sbjct: 385 ------RAMKVACGVWHSAAIVEISGQASTNAMSRKLFTWGDGDKNRLGHGDKEAKLVPT 438
Query: 290 IV 291
V
Sbjct: 439 CV 440
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 23/174 (13%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
L+ WG+ D + G + P+ V H +VACG VAL ++G +
Sbjct: 415 LFTWGD---GDKNRLGHGDKEAKLVPTCVQALVDHNFHQVACGHSMTVALATSGHVF--- 468
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPN 142
+ G++NNGQLG + + +P +++ ++ V E++CGS H A LT R
Sbjct: 469 -----TMGSSNNGQLGNPKADGK-QPCMVQ--DKLGNELVEEISCGSNHVAALTSR---- 516
Query: 143 DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
S +T+G+G NG+LGHG+ + P V L ++ S+ CG T+ +
Sbjct: 517 ----SEVYTWGMGANGRLGHGSVEDKKKPTLVDALKDR-HVKSISCGSNFTTCI 565
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 102/259 (39%), Gaps = 28/259 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
Q+ SV G S ++G L+ +G+ + G S P V G +KV
Sbjct: 333 QVLSVACGSWHSALTMSSGKLFTFGDGTF---GSLGHGDRESVAYPKEVEALSGFRAMKV 389
Query: 63 ACGSEHVVALV--SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
ACG H A+V S + ++WG + +LG GD+E++L P ++ +
Sbjct: 390 ACGVWHSAAIVEISGQASTNAMSRKLFTWGDGDKNRLGHGDKEAKLVPTCVQALVDHN-- 447
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
++V CG T L +T G NGQLG+ P V++
Sbjct: 448 -FHQVACGHSMTVALA--------TSGHVFTMGSSNNGQLGNPKADGKQ-PCMVQDKLGN 497
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ + CG H + ++S +V++WGM N L D P L+
Sbjct: 498 ELVEEISCGSNHVAALTSRSEVYTWGMG------ANGRLGHGSVEDKKKPTLVD-----A 546
Query: 241 PKFQDPVQVACGAAHTVLV 259
K + ++CG+ T +
Sbjct: 547 LKDRHVKSISCGSNFTTCI 565
>gi|222528951|ref|YP_002572833.1| chromosome condensation regulator RCC1 [Caldicellulosiruptor bescii
DSM 6725]
gi|222455798|gb|ACM60060.1| regulator of chromosome condensation RCC1 [Caldicellulosiruptor
bescii DSM 6725]
Length = 743
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 130/284 (45%), Gaps = 53/284 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + +V AG SLA+ G++W+WG+ ++ + FT +PV +V
Sbjct: 91 LKDVVAVSAGTFHSLALKKDGSVWIWGHTNYGQRKSD----VYRDFT-TPVKVKELKNIV 145
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G + +A+ G D ++WG NN+G+LG+G + P ++
Sbjct: 146 AIAAGWDFSLAV--------GSDGSVWAWGINNHGELGIGSLKPSAVPVKVKGLKD---- 193
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ--SALVPEQVKELP 178
V V+ G +H+ L KR + W++G E+G+LG+ T+ + VP +VK L
Sbjct: 194 -VVAVSAGLYHSLAL---KR-----DGTVWSWGYNEDGELGNRPTEDYTVSVPVRVKGLS 244
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWG---MEKGLGLCPNASLTRNEAGDAISPILISG 235
++++ G FH+ ++ G VW WG +EK G N+ + P+ I
Sbjct: 245 D---VIAISAGGFHSIALNKDGAVWIWGGGIIEKN-GKIDNSYI----------PVRIRW 290
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
V +A G H++ + DDG +W WG GVLG+
Sbjct: 291 -------LNKVVAIAAGYRHSIALKDDG-TVWVWGHNSYGVLGS 326
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 91/208 (43%), Gaps = 30/208 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + S+ AG SLA+ G +W WG+ L + FS P + G VV
Sbjct: 544 IKNVRSIAAGYFHSLAVRTDGTVWSWGDTNLDNKKKYLNFSE----KPVKIKGLSG--VV 597
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
KVA G H +AL +D +SWG N GQLG G RE+ P ++ N
Sbjct: 598 KVAAGKYHSLAL--------KKDGTVWSWGYNAYGQLGNGTRETSFVPVRVKGLNN---- 645
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G +H+ L + W +G GQLG + + VP +V++L
Sbjct: 646 -VVAIAAGDYHSMALKK--------DGTVWVWGSNIRGQLGRRNIEFSTVPLKVEKLDN- 695
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+V++ G H+ + G VW WG+E
Sbjct: 696 --VVAIAAGDTHSVALKKDGTVWVWGIE 721
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 114/290 (39%), Gaps = 49/290 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTV 59
+S + ++ AGG S+A++ GA+W+WG + E + +S+ P + W + V
Sbjct: 243 LSDVIAISAGGFHSIALNKDGAVWIWGGGII-----EKNGKIDNSYIPVRIRWL---NKV 294
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +A G H +AL +D + WG N+ G LG E ++
Sbjct: 295 VAIAAGYRHSIAL--------KDDGTVWVWGHNSYGVLGSNVGEHSFLLVQVKGLKN--- 343
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL-VPEQVKELP 178
V V G H+ LT W +G GQLG +L +P +VK L
Sbjct: 344 --VVAVAAGRLHSVALTK--------NGTIWAWGNNAFGQLGRENNSFSLNLPYKVKWLD 393
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+V++ G HT + G VWSWG L + P + G
Sbjct: 394 N---VVAIATGGSHTLAIKRDGTVWSWGANN------KGQLGNGTYKSSYIPTCVKG--- 441
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ V V G+ H++ V DG +W WG S V T D +P
Sbjct: 442 ----LNNAVLVEAGSQHSLAVDKDG-TVWVWGFIES-VWSEKNTKDILSP 485
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 122/330 (36%), Gaps = 69/330 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGG-FSLVSSFTPSPVWDFHGHTV 59
+ + +V AG + S+A+ G +W WGN E FSL + + V
Sbjct: 341 LKNVVAVAAGRLHSVALTKNGTIWAWGNNAFGQLGRENNSFSLNLPYKVKWL-----DNV 395
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ--- 116
V +A G H +A+ D +SWGANN GQLG G +S P ++ N
Sbjct: 396 VAIATGGSHTLAI--------KRDGTVWSWGANNKGQLGNGTYKSSYIPTCVKGLNNAVL 447
Query: 117 -----------------------DSPWAVYEVTCGSFHTALLTHRKRPNDMLE---SMCW 150
+S W+ E + L + ND+ E + +
Sbjct: 448 VEAGSQHSLAVDKDGTVWVWGFIESVWS--EKNTKDILSPLPIKIGKLNDITEIAGGLDY 505
Query: 151 TFGLGENGQL-GHG--------TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
L ++G + G G T S ++ L + S+ G FH+ V + G
Sbjct: 506 ILVLRKDGNIWGCGNDFYFRKFTDSSVSSVTKLIRLDNIKNVRSIAAGYFHSLAVRTDGT 565
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
VWSWG N + + P+ I G V+VA G H++ +
Sbjct: 566 VWSWG-------DTNLDNKKKYLNFSEKPVKIKG-------LSGVVKVAAGKYHSLALKK 611
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
DG +WSWG G LG G F P V
Sbjct: 612 DG-TVWSWGYNAYGQLGNGTRETSFVPVRV 640
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 119/294 (40%), Gaps = 49/294 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ S AG + +LAI + G +W WG G + S P V VV V
Sbjct: 43 KVISSGAGSLHTLAIKDDGTVWAWGYNGF---GQLGNGTYKDSCIPVRVKGLK--DVVAV 97
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G+ H +AL G + WG N GQ R+S + +
Sbjct: 98 SAGTFHSLALKKDGS--------VWIWGHTNYGQ-----RKSDVYRDFTTPVKVKELKNI 144
Query: 123 YEVTCG-SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ G F A+ + + W +G+ +G+LG G+ + + VP +VK L
Sbjct: 145 VAIAAGWDFSLAVGS---------DGSVWAWGINNHGELGIGSLKPSAVPVKVKGLKD-- 193
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGNGPH 239
+V+V GL+H+ + G VWSWG + LG P T + P+ + G
Sbjct: 194 -VVAVSAGLYHSLALKRDGTVWSWGYNEDGELGNRPTEDYTVS------VPVRVKG---- 242
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
D + ++ G H++ + DG +W WG G + GK + + P + W
Sbjct: 243 ---LSDVIAISAGGFHSIALNKDG-AVWIWGGGI--IEKNGKIDNSYIPVRIRW 290
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 116/296 (39%), Gaps = 52/296 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPS-PVWDFHGHTV 59
+ + +V AG SLA+ G +W WG + E G +T S PV V
Sbjct: 191 LKDVVAVSAGLYHSLALKRDGTVWSWG----YNEDGELGNRPTEDYTVSVPVRVKGLSDV 246
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGAN---NNGQLGLGDRESRLRPKIIETFNQ 116
+ ++ G H +AL +D + WG NG++ ++ P I N+
Sbjct: 247 IAISAGGFHSIAL--------NKDGAVWIWGGGIIEKNGKI-----DNSYIPVRIRWLNK 293
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V + G H+ L + W +G G LG + + + QVK
Sbjct: 294 -----VVAIAAGYRHSIALKD--------DGTVWVWGHNSYGVLGSNVGEHSFLLVQVKG 340
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L +V+V G H+ ++ G +W+WG NA ++ S N
Sbjct: 341 LKN---VVAVAAGRLHSVALTKNGTIWAWG--------NNAFGQLGRENNSFSL-----N 384
Query: 237 GPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P+ K+ D V +A G +HT+ + DG +WSWG G LG G + P V
Sbjct: 385 LPYKVKWLDNVVAIATGGSHTLAIKRDG-TVWSWGANNKGQLGNGTYKSSYIPTCV 439
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 121/321 (37%), Gaps = 94/321 (29%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNC--------------PLP------DSSTE--G 38
++ V+AG SLA+D G +W+WG PLP + TE G
Sbjct: 442 LNNAVLVEAGSQHSLAVDKDGTVWVWGFIESVWSEKNTKDILSPLPIKIGKLNDITEIAG 501
Query: 39 GFSLV------------------SSFTPSPVWDF-------HGHTVVKVACGSEHVVALV 73
G + FT S V + V +A G H +A+
Sbjct: 502 GLDYILVLRKDGNIWGCGNDFYFRKFTDSSVSSVTKLIRLDNIKNVRSIAAGYFHSLAVR 561
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRL----RPKIIETFNQDSPWAVYEVTCGS 129
+ G +SWG N L +++ L +P I+ + V +V G
Sbjct: 562 TDG--------TVWSWGDTN-----LDNKKKYLNFSEKPVKIKGLS-----GVVKVAAGK 603
Query: 130 FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCG 189
+H+ L + W++G GQLG+GT +++ VP +VK L +V++ G
Sbjct: 604 YHSLALKK--------DGTVWSWGYNAYGQLGNGTRETSFVPVRVKGLNN---VVAIAAG 652
Query: 190 LFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV 249
+H+ + G VW WG L R + P+ + K + V +
Sbjct: 653 DYHSMALKKDGTVWVWGSN------IRGQLGRRNIEFSTVPLKV-------EKLDNVVAI 699
Query: 250 ACGAAHTVLVTDDGYKLWSWG 270
A G H+V + DG +W WG
Sbjct: 700 AAGDTHSVALKKDG-TVWVWG 719
>gi|139948634|ref|NP_001077132.1| probable E3 ubiquitin-protein ligase HERC3 [Bos taurus]
gi|124829040|gb|AAI33342.1| HERC3 protein [Bos taurus]
gi|296486686|tpg|DAA28799.1| TPA: hect domain and RLD 3 [Bos taurus]
Length = 1050
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 139/297 (46%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV----SSFTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+ S P + + T
Sbjct: 85 HIVHVACGESHSLALSDQGQLFSWG------AGSDGQLGLMTIEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG + S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGRNSHGQLGLGKEFPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVVAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 118/279 (42%), Gaps = 68/279 (24%)
Query: 58 TVVKVACGSEHVVALVSAGETY------KGE----------------------DLVC--- 86
+V +VACG H V L+ GE Y KG+ + C
Sbjct: 35 SVKEVACGGNHSVFLLEDGEVYTCGVNTKGQLGHEREGNKPEQIGALADQHIVHVACGES 94
Query: 87 -----------YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTAL 134
+SWGA ++GQLGL E + P++I+ NQ + + +V+CG++H
Sbjct: 95 HSLALSDQGQLFSWGAGSDGQLGLMTIEDSVAVPRLIQKLNQQT---ILQVSCGNWHCLA 151
Query: 135 LTHRKRPNDMLESMCWTFGLGENGQLGHGTT-QSALVPEQVKELPQYVYLVSVDCGLFHT 193
L + +T+G +GQLG G S P++V+ L + + L V G H+
Sbjct: 152 LA--------ADGQFFTWGRNSHGQLGLGKEFPSQASPQRVRSL-EGIPLAQVVAGGAHS 202
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+S +G V+ WGM L ++ D SP + + Q V ++CG
Sbjct: 203 FALSLSGAVFGWGMNNA------GQLGLSDEKDRESPCHVK-----LLRTQKVVYISCGE 251
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
HT ++T G ++++G G G LG D P VL
Sbjct: 252 EHTAVLTKSG-GVFTFGAGSCGQLGHDSMNDEVNPRRVL 289
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVVAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|431902378|gb|ELK08879.1| RCC1 and BTB domain-containing protein 2 [Pteropus alecto]
Length = 621
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 108/235 (45%), Gaps = 34/235 (14%)
Query: 61 KVACGS----EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
K+AC S HV+ + GE + +WG N QLG G L P I T
Sbjct: 169 KIACFSYGSGPHVILATTEGEIF--------TWGHNAYSQLGNGTTNHGLVPCHIST--N 218
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V EV CGS+H+ +LT + + +G +GQ+G G+T + +P +V
Sbjct: 219 LSNKQVIEVACGSYHSLVLTS--------DGEVFAWGYNNSGQVGSGSTANQPIPRRVTG 270
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q +V++ CG + V G+V+ WG N L +G+ +P I+
Sbjct: 271 CLQNKVVVNIACGQMCSVAVVDNGEVYVWGYNG------NGQLGLGSSGNQSTPCRIAA- 323
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G Q +VACG AHT+++TD+G +++ WG G LGTG + P V
Sbjct: 324 -LQGICVQ---RVACGYAHTLVLTDEG-QVYVWGANSYGQLGTGNKSNQSYPTPV 373
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 105/254 (41%), Gaps = 47/254 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 224 VIEVACGSYHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQPIPRRVTGCLQNK 275
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + D E W G NGQLG G++ + P ++ L
Sbjct: 276 --VVVNIACGQMCSVAVV------DNGEVYVW--GYNGNGQLGLGSSGNQSTPCRIAAL- 324
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILIS 234
Q + + V CG HT V++ G V+ WG G G N S A + I I+
Sbjct: 325 QGICVQRVACGYAHTLVLTDEGQVYVWGANSYGQLGTGNKSNQSYPTPVAVEKDRIIEIA 384
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDF 285
AC + HT G ++ WG RG+S +L T
Sbjct: 385 ---------------ACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTSFSCTDDVFAC 429
Query: 286 FAPAIVLWPPLTEE 299
FA V W LT E
Sbjct: 430 FATPAVSWRLLTVE 443
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 83/210 (39%), Gaps = 25/210 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD-FHGHTVVK 61
Q+ V G SL + + G ++ WG +S G S + P V VV
Sbjct: 223 QVIEVACGSYHSLVLTSDGEVFAWG---YNNSGQVGSGSTANQPIPRRVTGCLQNKVVVN 279
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ACG VA+V GE Y WG N NGQLGLG ++ P I
Sbjct: 280 IACGQMCSVAVVDNGEVY--------VWGYNGNGQLGLGSSGNQSTPCRIAALQG---IC 328
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V V CG HT +LT E + +G GQLG G + P V +
Sbjct: 329 VQRVACGYAHTLVLTD--------EGQVYVWGANSYGQLGTGNKSNQSYPTPVAVEKDRI 380
Query: 182 YLVSVDCGLFHTSVV-SSAGDVWSWGMEKG 210
++ C HTS + G V+ WG +G
Sbjct: 381 IEIAA-CHSTHTSAAKTQGGHVYMWGQCRG 409
>gi|395521023|ref|XP_003764621.1| PREDICTED: RCC1 and BTB domain-containing protein 2 [Sarcophilus
harrisii]
Length = 552
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 118/274 (43%), Gaps = 35/274 (12%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS-E 67
AG + + +N + NC S G ++ S P V G + ++ GS
Sbjct: 55 AGNEVLYSTENDEVFVLGTNC----SGCLGTGDILHSIEPRRVDHLCGKKIACLSYGSGP 110
Query: 68 HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC 127
HVV GE Y +WG N QLG G L P I T + V EV C
Sbjct: 111 HVVIATDEGEVY--------TWGHNAYNQLGNGTTNHGLVPTHISTNLGNRK--VIEVAC 160
Query: 128 GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVD 187
GS H+ +LT E W G +GQ+G G+T + +P +V Q ++
Sbjct: 161 GSHHSLVLTSDG------EVFAW--GYNNSGQVGSGSTANQPIPRKVTGCLQNKIATTIA 212
Query: 188 CGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV 247
CG + V +G+V+ WG N L +G+ +P I+ G +
Sbjct: 213 CGQMCSMAVVESGEVYVWGYNG------NGQLGLGSSGNQPTPCRIA--ALQGIRVH--- 261
Query: 248 QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
++ CG AHT+++TD+G+ L++WG G LGTG
Sbjct: 262 KIVCGYAHTLVLTDEGH-LYAWGANSYGQLGTGN 294
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 93/383 (24%), Positives = 150/383 (39%), Gaps = 67/383 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H + L S GE + +WG NN+GQ+G G ++ P+ + Q+
Sbjct: 155 VIEVACGSHHSLVLTSDGEVF--------AWGYNNSGQVGSGSTANQPIPRKVTGCLQNK 206
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ CG + + + +G NGQLG G++ + P ++ L
Sbjct: 207 --IATTIACGQMCSMAVVESGE--------VYVWGYNGNGQLGLGSSGNQPTPCRIAAL- 255
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q + + + CG HT V++ G +++WG N G L +GN
Sbjct: 256 QGIRVHKIVCGYAHTLVLTDEGHLYAWGA--------------NSYGQ-----LGTGNKS 296
Query: 239 HGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTG 280
+ + PV V AC +AHT ++ WG RG+S L T
Sbjct: 297 N-QSYPTPVSVEKDRVIEIAACHSAHTSAAKTQSGHIYMWGQCRGQSVTLPHLTHFSCTD 355
Query: 281 KTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQ 340
FA V W L+ E D L + K+ + E D K + + + +
Sbjct: 356 DVFACFATPAVSWRLLSVE-PDDHLTVA----QSLKKEFDNPETADLKFLVDGKYIYVHK 410
Query: 341 SKLSV-MERYASILHGSIFGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRL 399
L + E + S+L+G+ E P+ F + L D L+ L
Sbjct: 411 VLLKIRCEHFRSVLNGNEDDIVEMDEFSYPVY---RAFLEYLYTDCINLSPEDAIGLLDL 467
Query: 400 ERFYR-NMLAGVKDKLMKRRIQE 421
FYR N L + + +K+ I E
Sbjct: 468 ATFYRDNRLKKLCQQTIKQGICE 490
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 20/131 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVVKV 62
++ G M S+A+ +G +++WG + G L SS TP + G V K+
Sbjct: 210 TIACGQMCSMAVVESGEVYVWG------YNGNGQLGLGSSGNQPTPCRIAALQGIRVHKI 263
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
CG H + L G Y +WGAN+ GQLG G++ ++ P + + +
Sbjct: 264 VCGYAHTLVLTDEGHLY--------AWGANSYGQLGTGNKSNQSYPTPVSV---EKDRVI 312
Query: 123 YEVTCGSFHTA 133
C S HT+
Sbjct: 313 EIAACHSAHTS 323
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 15/136 (11%)
Query: 152 FGLGEN--GQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
F LG N G LG G ++ P +V L + + +S G H + + G+V++WG
Sbjct: 69 FVLGTNCSGCLGTGDILHSIEPRRVDHLCGKKIACLSYGSGP-HVVIATDEGEVYTWGHN 127
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
L + P IS N + + ++VACG+ H++++T DG ++++
Sbjct: 128 ------AYNQLGNGTTNHGLVPTHISTNLGN----RKVIEVACGSHHSLVLTSDG-EVFA 176
Query: 269 WGRGRSGVLGTGKTID 284
WG SG +G+G T +
Sbjct: 177 WGYNNSGQVGSGSTAN 192
>gi|403377072|gb|EJY88530.1| hypothetical protein OXYTRI_12294 [Oxytricha trifallax]
Length = 709
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 137/304 (45%), Gaps = 37/304 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + +GG S + G LWM G+ L D G + S T PV + +V
Sbjct: 118 KVIFLSSGGKHSGLVTEDGKLWMCGS-NLHDKLGLEGITTGSKKTFKPVELLTQIFIKQV 176
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE----SRLRPKIIETFNQDS 118
ACG H +AL G+ Y WG + + + G +E ++ +P ++++F +
Sbjct: 177 ACGDYHTLALSKEGQVY--------VWGGSLHNKRGDRSQERKDNAKYKPVLLQSF---A 225
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ ++ CG FH+ L +++G+GE G+ GHG + P+++K
Sbjct: 226 GKKIKQIDCGDFHSLALDDN--------GTLYSWGVGEKGECGHGKFEDQETPQRIKFFD 277
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTR----NEAGDAISP 230
+ + ++ G HT +++ V++WG + G G N ++ + G+ S
Sbjct: 278 GKI-ITQIEAGNHHTLAITADNQVYAWGDGRYGQCGFGEFENTAIPQLVNFPSQGNNTSY 336
Query: 231 ILISGNGPHGPKFQDP---VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
+ S F+DP Q+A G HT+++T G +++S+G + G LG ++
Sbjct: 337 LDDSVQQEILEFFKDPPKIKQIAAGEMHTLVLTSSG-QIFSFGYNQQGQLGHNTVDNYCR 395
Query: 288 PAIV 291
P +V
Sbjct: 396 PKLV 399
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 42/232 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + G SLA+D+ G L+ WG + + G TP + F G + ++
Sbjct: 228 KIKQIDCGDFHSLALDDNGTLYSWG---VGEKGECGHGKFEDQETPQRIKFFDGKIITQI 284
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE---------- 112
G+ H +A+ + D Y+WG GQ G G+ E+ P+++
Sbjct: 285 EAGNHHTLAITA--------DNQVYAWGDGRYGQCGFGEFENTAIPQLVNFPSQGNNTSY 336
Query: 113 ----------TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
F +D P + ++ G HT +LT ++FG + GQLGH
Sbjct: 337 LDDSVQQEILEFFKDPP-KIKQIAAGEMHTLVLTS--------SGQIFSFGYNQQGQLGH 387
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLC 214
T + P+ V+ + + V V G H+ +++ DV++ G + G C
Sbjct: 388 NTVDNYCRPKLVEGMLNHK-TVQVAAGRNHSLCLTNKNDVYACGNNQ-YGQC 437
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 89/211 (42%), Gaps = 26/211 (12%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
+S+G N G+LG G L P+ + V ++ G H+ L+T +
Sbjct: 87 WSFGQNTKGELGTGHYNEVLMPERVRGL---PKLKVIFLSSGGKHSGLVTE--------D 135
Query: 147 SMCWTFGLGENGQLG-HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSW 205
W G + +LG G T + + EL +++ V CG +HT +S G V+ W
Sbjct: 136 GKLWMCGSNLHDKLGLEGITTGSKKTFKPVELLTQIFIKQVACGDYHTLALSKEGQVYVW 195
Query: 206 GMEKGLGLCPNASLTRNEA---GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
G G N R++ P+L+ G K + Q+ CG H++ + D+
Sbjct: 196 G-----GSLHNKRGDRSQERKDNAKYKPVLLQSFA--GKKIK---QIDCGDFHSLALDDN 245
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
G L+SWG G G G GK D P + +
Sbjct: 246 G-TLYSWGVGEKGECGHGKFEDQETPQRIKF 275
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 109/263 (41%), Gaps = 46/263 (17%)
Query: 70 VALVSAGETYKG---EDLVCYSWGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYE 124
V +S+G + G ED + G+N + +LGL S+ K +E Q + +
Sbjct: 119 VIFLSSGGKHSGLVTEDGKLWMCGSNLHDKLGLEGITTGSKKTFKPVELLTQ---IFIKQ 175
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV--- 181
V CG +HT L+ E + +G + + G + + + L Q
Sbjct: 176 VACGDYHTLALSK--------EGQVYVWGGSLHNKRGDRSQERKDNAKYKPVLLQSFAGK 227
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGM-EKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ +DCG FH+ + G ++SWG+ EK G C + E P
Sbjct: 228 KIKQIDCGDFHSLALDDNGTLYSWGVGEK--GECGHGKFEDQET-------------PQR 272
Query: 241 PKFQDP---VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
KF D Q+ G HT+ +T D ++++WG GR G G G+ + P +V +P
Sbjct: 273 IKFFDGKIITQIEAGNHHTLAITADN-QVYAWGDGRYGQCGFGEFENTAIPQLVNFPSQG 331
Query: 298 EEFKQDELNTGGLDDEIKTKDLE 320
NT LDD ++ + LE
Sbjct: 332 N-------NTSYLDDSVQQEILE 347
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 87/220 (39%), Gaps = 55/220 (25%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWG-------------NCPLPD----SSTEGGFSLVSSF 46
I ++AG +LAI ++ WG N +P S S +
Sbjct: 281 ITQIEAGNHHTLAITADNQVYAWGDGRYGQCGFGEFENTAIPQLVNFPSQGNNTSYLDDS 340
Query: 47 TPSPVWDFHGH--TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES 104
+ +F + ++A G H + L S+G+ +S+G N GQLG ++
Sbjct: 341 VQQEILEFFKDPPKIKQIAAGEMHTLVLTSSGQ--------IFSFGYNQQGQLGHNTVDN 392
Query: 105 RLRPKIIE-TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
RPK++E N + +V G H+ LT++ ND+ + G + GQ G
Sbjct: 393 YCRPKLVEGMLNHKTV----QVAAGRNHSLCLTNK---NDV-----YACGNNQYGQCG-- 438
Query: 164 TTQSALVP--EQVKELPQYVYLVSVD-----CGLFHTSVV 196
+P E K + L+SV+ G FH+ VV
Sbjct: 439 ------LPDREMRKTFSHVLSLLSVNSFKLYAGGFHSWVV 472
>gi|330798916|ref|XP_003287495.1| hypothetical protein DICPUDRAFT_151599 [Dictyostelium purpureum]
gi|325082514|gb|EGC35994.1| hypothetical protein DICPUDRAFT_151599 [Dictyostelium purpureum]
Length = 1935
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 144/356 (40%), Gaps = 74/356 (20%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV---------WD 53
+I ++ AG ++ + +G L+ +G D G S S P+ +
Sbjct: 1231 KIQAIAAGFAHNIVLKKSGELFSFG---YGDFGQLGTGSFHSKNIPTRIEINAIMGGLQH 1287
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
G + ++ACG H V GE YSWG GQLG E+ +P++IET
Sbjct: 1288 HDGGKITQIACGFGHSVICSENGE--------VYSWGLGKQGQLGHKVFENISKPRLIET 1339
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
V +++CG FHT T K +++G GE+ +LGH + + VP+
Sbjct: 1340 LR-----GVTKISCGHFHTVATTDLKN--------VYSWGSGEHMKLGHSSDKDESVPKV 1386
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
V Q + V CG HT ++ D+ + + N G + SPI
Sbjct: 1387 VDFFIQ-KNVSKVVCGQNHTMTITFPDDLNNSNQDD--------EDEENMNGKSSSPIYA 1437
Query: 234 SGNGPHG----------PKFQDPV-------------QVACGAAHTVLVTDDGYKLWSWG 270
G+ HG P F P+ ++CG+ + ++T + ++ WG
Sbjct: 1438 WGSAEHGKLGLGGDLKSPFFDKPIPTAIKGVNSLNLIDISCGSDFSAMITSNN-AIYVWG 1496
Query: 271 RGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGL--DDEIKTKDLEGAEE 324
GR G +G GK D + P + T+ N GGL D++ + EG EE
Sbjct: 1497 CGRFGQIGNGKNDDVWVPTRISLNDSTKP------NFGGLQADNKKQRYSQEGLEE 1546
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 139/326 (42%), Gaps = 67/326 (20%)
Query: 16 AIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHT-VVKVACGSEHVVA 71
I + G L+ WG+ + S + G L + T P V F G + + V CG EH +A
Sbjct: 1136 VITDDGELYTWGS----NQSGQLGHGLEVNKTLSLPKRVDFFRGKSPIFMVECGGEHTIA 1191
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRE-SRLRPKIIETFNQDSPWAVYEVTCGSF 130
+ S + YSWG++ GQLG G + ++ RPK+IE + + + G
Sbjct: 1192 VDS--------NYFVYSWGSDKFGQLGHGTKAVNQSRPKVIEEL---TGQKIQAIAAGFA 1240
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV--------- 181
H +L K+ ++ ++FG G+ GQLG G+ S +P ++ E+ +
Sbjct: 1241 HNIVL---KKSGEL-----FSFGYGDFGQLGTGSFHSKNIPTRI-EINAIMGGLQHHDGG 1291
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ + CG H+ + S G+V+SWG+ K L + P LI
Sbjct: 1292 KITQIACGFGHSVICSENGEVYSWGLGK------QGQLGHKVFENISKPRLIET------ 1339
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG--------KTIDFFAPAIV-- 291
+ +++CG HTV TD ++SWG G LG K +DFF V
Sbjct: 1340 -LRGVTKISCGHFHTVATTDLK-NVYSWGSGEHMKLGHSSDKDESVPKVVDFFIQKNVSK 1397
Query: 292 ----LWPPLTEEFKQDELNTGGLDDE 313
+T F D+LN DDE
Sbjct: 1398 VVCGQNHTMTITFP-DDLNNSNQDDE 1422
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 108/226 (47%), Gaps = 33/226 (14%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL--RPKIIETFNQD 117
+KV+CG +H+ + GE Y+WG+N +GQLG G ++ PK ++ F
Sbjct: 1125 IKVSCGWDHIAVITDDGE--------LYTWGSNQSGQLGHGLEVNKTLSLPKRVDFFRGK 1176
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT---TQSALVPEQV 174
SP ++ V CG HT + +++G + GQLGHGT QS P+ +
Sbjct: 1177 SP--IFMVECGGEHTIAVDSN--------YFVYSWGSDKFGQLGHGTKAVNQSR--PKVI 1224
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS 234
+EL + ++ G H V+ +G+++S+G G S I I
Sbjct: 1225 EELTGQK-IQAIAAGFAHNIVLKKSGELFSFGY-GDFGQLGTGSFHSKNIPTRIEINAIM 1282
Query: 235 GNGPH--GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
G H G K Q+ACG H+V+ +++G +++SWG G+ G LG
Sbjct: 1283 GGLQHHDGGKI---TQIACGFGHSVICSENG-EVYSWGLGKQGQLG 1324
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 24/116 (20%)
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAI---SPILISGN 236
+ V CG H +V++ G++++WG + G GL N +L+ + D SPI +
Sbjct: 1125 IKVSCGWDHIAVITDDGELYTWGSNQSGQLGHGLEVNKTLSLPKRVDFFRGKSPIFM--- 1181
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG-KTIDFFAPAIV 291
V CG HT+ V D Y ++SWG + G LG G K ++ P ++
Sbjct: 1182 ------------VECGGEHTIAV-DSNYFVYSWGSDKFGQLGHGTKAVNQSRPKVI 1224
>gi|218779101|ref|YP_002430419.1| chromosome condensation regulator RCC1 [Desulfatibacillum
alkenivorans AK-01]
gi|218760485|gb|ACL02951.1| regulator of chromosome condensation RCC1 [Desulfatibacillum
alkenivorans AK-01]
Length = 671
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 124/324 (38%), Gaps = 67/324 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-------- 52
+S + S+ G SLA+ G++W WG S G V S TP+ V
Sbjct: 37 LSNVVSLAGGEKHSLAVSGDGSVWSWG-------SNSAGQLGVESLTPASVLAPVHALYS 89
Query: 53 --DFH--------GHTVVKVAC------------GSEHVVALVSAGETYK---GEDLVCY 87
DFH G + C G + V +++AG + D +
Sbjct: 90 GDDFHLFYDTDGDGTGDICDDCPYDPFKTAPGLSGCGNAVPMLAAGTQFSLGLKTDGTVW 149
Query: 88 SWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLES 147
SWG N LGLGDR R P+ +E + + G HT LT +
Sbjct: 150 SWGCNTYATLGLGDRVDRNTPQKVEALSN-----AVALAAGDDHTLALTR--------DG 196
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM 207
W++G NGQLG G+ K++ + ++ +HT ++ G+VWSWG
Sbjct: 197 SVWSWGWNYNGQLGLGSIHEDTYESTPKKVEAISNVTAIAAQTYHTQALTRDGNVWSWGS 256
Query: 208 EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLW 267
L + D +P + + V + G H++ VT DG ++W
Sbjct: 257 ND------FGQLGMGDQNDRDAPQKVE-------ALSNVVAINAGGNHSLAVTRDG-QVW 302
Query: 268 SWGRGRSGVLGTGKTIDFFAPAIV 291
+WG G LG G D AP V
Sbjct: 303 AWGENSEGQLGLGDLWDRDAPQKV 326
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 120/280 (42%), Gaps = 50/280 (17%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
+ AG SL + G +W WG C +T G V TP V V +A G
Sbjct: 132 LAAGTQFSLGLKTDGTVWSWG-CNT--YATLGLGDRVDRNTPQKVEALS--NAVALAAGD 186
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG---DRESRLRPKIIETFNQDSPWAVY 123
+H +AL G + SWG N NGQLGLG + PK +E + V
Sbjct: 187 DHTLALTRDGSVW--------SWGWNYNGQLGLGSIHEDTYESTPKKVEAISN-----VT 233
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
+ ++HT LT + W++G + GQLG G P++V+ L +
Sbjct: 234 AIAAQTYHTQALTR--------DGNVWSWGSNDFGQLGMGDQNDRDAPQKVEALSN---V 282
Query: 184 VSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V+++ G H+ V+ G VW+WG E LGL + D +P +
Sbjct: 283 VAINAGGNHSLAVTRDGQVWAWGENSEGQLGL--------GDLWDRDAPQKVE------- 327
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+ V + G HT+ +T DG +W+WG+ G +GTG+
Sbjct: 328 ALSNVVAINAGGDHTLALTRDG-SVWAWGKNGRGQIGTGE 366
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 34/210 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHG 56
+S ++ AG +LA+ G++W WG + G L S ++ +P
Sbjct: 176 LSNAVALAAGDDHTLALTRDGSVWSWG------WNYNGQLGLGSIHEDTYESTPKKVEAI 229
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
V +A + H AL G + SWG+N+ GQLG+GD+ R P+ +E +
Sbjct: 230 SNVTAIAAQTYHTQALTRDGNVW--------SWGSNDFGQLGMGDQNDRDAPQKVEALSN 281
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V + G H+ +T + W +G GQLG G P++V+
Sbjct: 282 -----VVAINAGGNHSLAVTR--------DGQVWAWGENSEGQLGLGDLWDRDAPQKVEA 328
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
L +V+++ G HT ++ G VW+WG
Sbjct: 329 LSN---VVAINAGGDHTLALTRDGSVWAWG 355
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 66/167 (39%), Gaps = 26/167 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + ++ A + A+ G +W WG+ D G P V VV
Sbjct: 229 ISNVTAIAAQTYHTQALTRDGNVWSWGS---NDFGQLGMGDQNDRDAPQKVEALS--NVV 283
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+ G H +A+ G+ + +WG N+ GQLGLGD R P+ +E +
Sbjct: 284 AINAGGNHSLAVTRDGQVW--------AWGENSEGQLGLGDLWDRDAPQKVEALSN---- 331
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
V + G HT LT + W +G GQ+G G QS
Sbjct: 332 -VVAINAGGDHTLALTR--------DGSVWAWGKNGRGQIGTGEGQS 369
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 63/169 (37%), Gaps = 32/169 (18%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
WT+G ++G+LG G T +P Q+ L V L G H+ VS G VWSWG
Sbjct: 10 WTWGGNDDGRLGIGATGDQNLPVQLSYLSNVVSLAG---GEKHSLAVSGDGSVWSWGSNS 66
Query: 210 G--LG---LCPNASLTRNEA--------------GDAISPILISGNGPHGPKFQDPVQVA 250
LG L P + L A GD I + P+ P P
Sbjct: 67 AGQLGVESLTPASVLAPVHALYSGDDFHLFYDTDGDGTGDIC--DDCPYDPFKTAPGLSG 124
Query: 251 CGAAHTVLVTDDGYKL--------WSWGRGRSGVLGTGKTIDFFAPAIV 291
CG A +L + L WSWG LG G +D P V
Sbjct: 125 CGNAVPMLAAGTQFSLGLKTDGTVWSWGCNTYATLGLGDRVDRNTPQKV 173
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 27/130 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHG---- 56
+S + ++ AGG SLA+ G +W WG ++EG L +WD
Sbjct: 279 LSNVVAINAGGNHSLAVTRDGQVWAWG------ENSEGQLGL------GDLWDRDAPQKV 326
Query: 57 ---HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
VV + G +H +AL G + +WG N GQ+G G+ +S +
Sbjct: 327 EALSNVVAINAGGDHTLALTRDGSVW--------AWGKNGRGQIGTGEGQSLYNEPVHVI 378
Query: 114 FNQDSPWAVY 123
++ ++ + Y
Sbjct: 379 YSDENFYLFY 388
>gi|313221384|emb|CBY32137.1| unnamed protein product [Oikopleura dioica]
Length = 1586
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 128/288 (44%), Gaps = 65/288 (22%)
Query: 47 TPSPVWDFHGHTVVKVA--CGSE-HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
PS V G V ++ GS+ H +A+ +GE ++WG + G+LG G+ E
Sbjct: 805 VPSLVSALQGFIVTHLSSSVGSDGHTLAITESGE--------LFTWGDGDYGKLGHGNSE 856
Query: 104 SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
+ RP+++ET ++ V + CG HTA++T +TFG G+ G+LGHG
Sbjct: 857 RQRRPRLVETLVGET---VVDGCCGYKHTAVVT--------ATGYLYTFGYGDYGRLGHG 905
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAG-DVWSWGM----EKGLG-----L 213
T S P V + +VSV CGL HT +S G VW++G + GLG
Sbjct: 906 NTTSKKTPTLVHDCQN---IVSVSCGLNHTLALSRDGMTVWAFGDGDFGKLGLGNTLAVQ 962
Query: 214 CPNASLTRNEAGD-------------AIS-PILISG----NGPHGP-------KFQD--- 245
PN G AI+ + +SG NG GP K +
Sbjct: 963 SPNKIAALENVGIKSVHCGHQWSVFLAINGDVYVSGQDAFNGIGGPGQTVIPTKLETIKK 1022
Query: 246 -PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
Q++CGA +T+ + +DG +WSWG G +G G P + L
Sbjct: 1023 RVFQISCGAEYTLALDEDG-NVWSWGNNSDGQVGCGHFNKVHEPLLTL 1069
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 29/219 (13%)
Query: 77 ETYKGEDLVCYSWGANNNGQLGLGDRESR--LRPKIIETFNQDSPWAVYEVTCGSFHTAL 134
E+++G Y WG +GQLGL R P+ +E F+ + + G T L
Sbjct: 723 ESWRGVKAKAYVWGGVRHGQLGLNMNVGRHCALPRRLEAFDN-----MQTIELGLNCTFL 777
Query: 135 LTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV--YLVSVDCGLFH 192
+ + G G G+LGHG + VP V L ++ +L S H
Sbjct: 778 CS--------ASGAVTSTGEGSYGRLGHGNSDDLSVPSLVSALQGFIVTHLSSSVGSDGH 829
Query: 193 TSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACG 252
T ++ +G++++WG + G + + R + ++ + V CG
Sbjct: 830 TLAITESGELFTWG-DGDYGKLGHGNSERQRRPRLVETLV----------GETVVDGCCG 878
Query: 253 AAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT +VT GY L+++G G G LG G T P +V
Sbjct: 879 YKHTAVVTATGY-LYTFGYGDYGRLGHGNTTSKKTPTLV 916
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 84/241 (34%), Gaps = 71/241 (29%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+LAI +G L+ WG+ D G + P V G TVV CG +H +
Sbjct: 830 TLAITESGELFTWGD---GDYGKLGHGNSERQRRPRLVETLVGETVVDGCCGYKHTAVVT 886
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G Y++G + G+LG G+ S+ P ++ + V+CG HT
Sbjct: 887 ATG--------YLYTFGYGDYGRLGHGNTTSKKTPTLVHDCQN-----IVSVSCGLNHTL 933
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY------------- 180
L+ W FG G+ G+LG G T + P ++ L
Sbjct: 934 ALSRDGM-------TVWAFGDGDFGKLGLGNTLAVQSPNKIAALENVGIKSVHCGHQWSV 986
Query: 181 -------VYL----------------------------VSVDCGLFHTSVVSSAGDVWSW 205
VY+ + CG +T + G+VWSW
Sbjct: 987 FLAINGDVYVSGQDAFNGIGGPGQTVIPTKLETIKKRVFQISCGAEYTLALDEDGNVWSW 1046
Query: 206 G 206
G
Sbjct: 1047 G 1047
>gi|348676014|gb|EGZ15832.1| hypothetical protein PHYSODRAFT_315997 [Phytophthora sojae]
Length = 614
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 125/281 (44%), Gaps = 40/281 (14%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHTVVKVACGSEHVVALVS 74
++ AL GN + G L SS T + V + G V V C H ++
Sbjct: 131 EHLAALHANGNLYTVGFNMRGQLGLGSSTTVMEATLVEELAGKRVADVGCSYFHTAIVMD 190
Query: 75 AGETYKGEDLVCYSWGANNNGQLGLGD-RESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
G+ Y + G N+ GQLGLGD R L P+ +E F + V V CG +T
Sbjct: 191 NGDLY--------ACGCNDYGQLGLGDHRNGELVPRPVEYFFR---RPVLAVACGQHYTI 239
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLG-HGTTQSALVPEQVKELPQYVYLVSVDCGLFH 192
+ + FG ++GQLG T++ P ++ + + + CG H
Sbjct: 240 --------ASLRDGGVVAFGKNDHGQLGLDSTSEPVSQPTRLAAPLDRLVVPQLSCGYHH 291
Query: 193 TSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
T+VV+ G V+++G LGL + R ++++ + I+ QVA
Sbjct: 292 TAVVTEDGAVYTFGRNDYGQLGLGHKMHMARPARVESLARMRIT-------------QVA 338
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
CG HT++++DDG K++ +GR G LG ++D +P ++
Sbjct: 339 CGCYHTLVLSDDG-KVFPFGRNNHGQLGLETSVDCLSPQLI 378
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 109/281 (38%), Gaps = 63/281 (22%)
Query: 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
HG VV VACG+E L G+ Y+ G N++GQ +G E +
Sbjct: 65 HGRRVVDVACGNEQTAILFEDGDV--------YTCGYNDSGQCAIGTTERVPTLRFSPGL 116
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
+ + ++ GS H A L N L +T G GQLG G++ + + V
Sbjct: 117 SSNRTVRIFSGN-GSEHLAAL----HANGNL----YTVGFNMRGQLGLGSSTTVMEATLV 167
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLT-RNEAGDAIS 229
+EL + V C FHT++V GD+++ G + GLG N L R
Sbjct: 168 EELAGK-RVADVGCSYFHTAIVMDNGDLYACGCNDYGQLGLGDHRNGELVPRPVEYFFRR 226
Query: 230 PILISGNGPHGP-----------------------KFQDPV----------------QVA 250
P+L G H +PV Q++
Sbjct: 227 PVLAVACGQHYTIASLRDGGVVAFGKNDHGQLGLDSTSEPVSQPTRLAAPLDRLVVPQLS 286
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
CG HT +VT+DG ++++GR G LG G + PA V
Sbjct: 287 CGYHHTAVVTEDG-AVYTFGRNDYGQLGLGHKMHMARPARV 326
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 36/192 (18%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT--PSPVWDFHGHTVVK 61
I S++ GG+++ ++ G L + DS++E VS T +P+ V +
Sbjct: 239 IASLRDGGVVAFGKNDHGQLGL-------DSTSEP----VSQPTRLAAPLDRL---VVPQ 284
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
++CG H + ED Y++G N+ GQLGLG + RP +E+ +
Sbjct: 285 LSCGYHHTAVVT--------EDGAVYTFGRNDYGQLGLGHKMHMARPARVESLAR---MR 333
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ +V CG +HT +L+ + + FG +GQLG T+ L P+ + L
Sbjct: 334 ITQVACGCYHTLVLSD--------DGKVFPFGRNNHGQLGLETSVDCLSPQLISTLRNKT 385
Query: 182 YLVSVDCGLFHT 193
+ V G +H+
Sbjct: 386 -VTKVAAGFYHS 396
>gi|218197208|gb|EEC79635.1| hypothetical protein OsI_20852 [Oryza sativa Indica Group]
Length = 1038
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 134/304 (44%), Gaps = 48/304 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF----SLVSSFTPSPVW-DFH 55
+S + + G + + +G L+ WG D S G + VS + P V
Sbjct: 312 VSNVEYIACGEFHTCVVTASGDLYDWG-----DGSYNAGLLGHGTGVSHWLPKRVSGPLE 366
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G V+ VACGS H +S+G+ + ++G G LG GDRES PK +E
Sbjct: 367 GLQVLSVACGSWHSALTMSSGKLF--------TFGDGTFGSLGHGDRESVAYPKEVEAL- 417
Query: 116 QDSPWAVYEVTCGSFHTALLTH--RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
S + +V CG +H+A + + + + +T+G G+ +LGHG ++ LVP
Sbjct: 418 --SGFRAMKVACGVWHSAAIVEISGQASTNAMSRKLFTWGDGDKNRLGHGDKEAKLVPTC 475
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
V+ L + + V CG T ++++G V++ G N N D P ++
Sbjct: 476 VQALVDHNFH-QVACGHSMTVALATSGHVFTMGSS-------NNGQLGNPKADGKQPCMV 527
Query: 234 SGNGPHGPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
QD + +++CG+ H +T ++++WG G +G LG G D
Sbjct: 528 ----------QDKLGNELVEEISCGSNHVAALTSRS-EVYTWGMGANGRLGHGSVEDKKK 576
Query: 288 PAIV 291
P +V
Sbjct: 577 PTLV 580
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 126/290 (43%), Gaps = 45/290 (15%)
Query: 17 IDNAGALWMWGNCPLPDSSTEGGFSLVSSFT----PSPVWDFHGHTVVKVACGSEHVVAL 72
I++ G +++WG +EG + + S T P P+ V ++ACGS H+
Sbjct: 217 IESLGDVYVWGEVWTEVLPSEGSSNYLCSKTDFLIPKPLESDVVLDVQQIACGSRHIGLT 276
Query: 73 VSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHT 132
GE + +WG G+LG G RPK++E+ + V + CG FHT
Sbjct: 277 TRQGEVF--------TWGEELGGRLGHGTDTDICRPKLVESLAVSN---VEYIACGEFHT 325
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFH 192
++T D+ + W G G LGHGT S +P++V + + ++SV CG +H
Sbjct: 326 CVVT---ASGDLYD---WGDGSYNAGLLGHGTGVSHWLPKRVSGPLEGLQVLSVACGSWH 379
Query: 193 TSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
+++ S+G ++++ G LG S+ + +A+S ++VA
Sbjct: 380 SALTMSSGKLFTFGDGTFGSLGHGDRESVAYPKEVEALSGF-------------RAMKVA 426
Query: 251 CGAAHTVLVTDD---------GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
CG H+ + + KL++WG G LG G P V
Sbjct: 427 CGVWHSAAIVEISGQASTNAMSRKLFTWGDGDKNRLGHGDKEAKLVPTCV 476
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 23/174 (13%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
L+ WG+ D + G + P+ V H +VACG VAL ++G +
Sbjct: 451 LFTWGD---GDKNRLGHGDKEAKLVPTCVQALVDHNFHQVACGHSMTVALATSGHVF--- 504
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPN 142
+ G++NNGQLG + + +P +++ ++ V E++CGS H A LT R
Sbjct: 505 -----TMGSSNNGQLGNPKADGK-QPCMVQ--DKLGNELVEEISCGSNHVAALTSR---- 552
Query: 143 DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
S +T+G+G NG+LGHG+ + P V L ++ S+ CG T+ +
Sbjct: 553 ----SEVYTWGMGANGRLGHGSVEDKKKPTLVDALKDR-HVKSISCGSNFTTCI 601
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 102/259 (39%), Gaps = 28/259 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
Q+ SV G S ++G L+ +G+ + G S P V G +KV
Sbjct: 369 QVLSVACGSWHSALTMSSGKLFTFGDGTF---GSLGHGDRESVAYPKEVEALSGFRAMKV 425
Query: 63 ACGSEHVVALV--SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
ACG H A+V S + ++WG + +LG GD+E++L P ++ +
Sbjct: 426 ACGVWHSAAIVEISGQASTNAMSRKLFTWGDGDKNRLGHGDKEAKLVPTCVQALVDHN-- 483
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
++V CG T L +T G NGQLG+ P V++
Sbjct: 484 -FHQVACGHSMTVALA--------TSGHVFTMGSSNNGQLGNPKADGKQ-PCMVQDKLGN 533
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ + CG H + ++S +V++WGM N L D P L+
Sbjct: 534 ELVEEISCGSNHVAALTSRSEVYTWGMG------ANGRLGHGSVEDKKKPTLVD-----A 582
Query: 241 PKFQDPVQVACGAAHTVLV 259
K + ++CG+ T +
Sbjct: 583 LKDRHVKSISCGSNFTTCI 601
>gi|218196711|gb|EEC79138.1| hypothetical protein OsI_19792 [Oryza sativa Indica Group]
Length = 1385
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 138/306 (45%), Gaps = 36/306 (11%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ +G L+ WGN +S G + VS + P V G V ++CG
Sbjct: 412 VACGEYHTCAVTLSGDLYTWGNG-TSNSGLLGHGNEVSHWVPKRVNGPLEGIHVSAISCG 470
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ +++G + G LG GDR+S P+ +E+
Sbjct: 471 PWHTAIVTSAGQ--------LFTFGDGSFGVLGHGDRQSLSVPREVESLKG---LRTVRA 519
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ G+LGHG + LVP V L +
Sbjct: 520 ACGVWHTAAVVEVMVGNSSSSNCSSGKIFTWGDGDKGRLGHGDKDTRLVPTCVAALVEPN 579
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ + CG T ++++G V++ G P N D + P+ + G
Sbjct: 580 F-CQIACGHCMTVALTTSGHVYTMG-------SPVYGQLGNPQADGMLPVRVEGK--LHK 629
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFK 301
F + +++CGA H ++T ++++WG+G +G LG G T D +P +V E K
Sbjct: 630 NFVE--EISCGAYHVAVLTSR-TEVYTWGKGANGRLGHGDTDDRSSPTLV------ESLK 680
Query: 302 QDELNT 307
++ T
Sbjct: 681 DKQVRT 686
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 104/246 (42%), Gaps = 43/246 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V ++CG H + GE Y SWG + G+LG G +PK+I+
Sbjct: 357 VQNISCGGRHATLVTKQGEIY--------SWGEESGGRLGHGVDCDVPQPKLIDALAN-- 406
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ V CG +HT +T D+ W G +G LGHG S VP++V
Sbjct: 407 -MNIELVACGEYHTCAVTLS---GDL---YTWGNGTSNSGLLGHGNEVSHWVPKRVNGPL 459
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGN 236
+ +++ ++ CG +HT++V+SAG ++++G LG SL+ +++
Sbjct: 460 EGIHVSAISCGPWHTAIVTSAGQLFTFGDGSFGVLGHGDRQSLSVPREVESL-------- 511
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGKTIDF 285
K V+ ACG HT V + K+++WG G G LG G
Sbjct: 512 -----KGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKIFTWGDGDKGRLGHGDKDTR 566
Query: 286 FAPAIV 291
P V
Sbjct: 567 LVPTCV 572
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 23/176 (13%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80
G ++ WG+ D G + P+ V ++ACG VAL ++G Y
Sbjct: 545 GKIFTWGDG---DKGRLGHGDKDTRLVPTCVAALVEPNFCQIACGHCMTVALTTSGHVY- 600
Query: 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKR 140
+ G+ GQLG + L ++ +++ V E++CG++H A+LT R
Sbjct: 601 -------TMGSPVYGQLGNPQADGMLPVRVEGKLHKN---FVEEISCGAYHVAVLTSR-- 648
Query: 141 PNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
+ +T+G G NG+LGHG T P V+ L + + +V CG+ T+ +
Sbjct: 649 ------TEVYTWGKGANGRLGHGDTDDRSSPTLVESL-KDKQVRTVVCGINFTAAI 697
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 16/148 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVK 61
C + G M++A+ +G ++ G+ P+ + G P V H + V +
Sbjct: 579 NFCQIACGHCMTVALTTSGHVYTMGS-PV---YGQLGNPQADGMLPVRVEGKLHKNFVEE 634
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
++CG+ HV L S E Y +WG NG+LG GD + R P ++E+
Sbjct: 635 ISCGAYHVAVLTSRTEVY--------TWGKGANGRLGHGDTDDRSSPTLVESLKDKQ--- 683
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMC 149
V V CG TA + K + + +SMC
Sbjct: 684 VRTVVCGINFTAAICIHKWVSGVDQSMC 711
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 20/143 (13%)
Query: 157 NGQLGH-GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGL 213
N ++G+ G L+P+ + E + + ++ CG H ++V+ G+++SWG E G LG
Sbjct: 331 NSRVGNSGVKMDCLIPKPL-EFAVKLDVQNISCGGRHATLVTKQGEIYSWGEESGGRLGH 389
Query: 214 CPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG- 272
+ + + + DA++ + I VACG HT VT G L++WG G
Sbjct: 390 GVDCDVPQPKLIDALANMNIE-------------LVACGEYHTCAVTLSG-DLYTWGNGT 435
Query: 273 -RSGVLGTGKTIDFFAPAIVLWP 294
SG+LG G + + P V P
Sbjct: 436 SNSGLLGHGNEVSHWVPKRVNGP 458
>gi|12325184|gb|AAG52535.1|AC013289_2 putative regulator of chromosome condensation; 48393-44372
[Arabidopsis thaliana]
Length = 1028
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 130/300 (43%), Gaps = 47/300 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTVV 60
S+ G + AI +G L+ WG N L E S + P V D G V
Sbjct: 343 SLACGDFHTCAITQSGDLYSWGDGTHNVDLLGHGNES-----SCWIPKRVTGDLQGLYVS 397
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VACG H + S+G+ +++G G LG GDR S P+ +E+
Sbjct: 398 DVACGPWHTAVVASSGQ--------LFTFGDGTFGALGHGDRRSTSVPREVESL---IGL 446
Query: 121 AVYEVTCGSFHTALLTH-----RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V +V CG +HTA + + D +T+G GE GQLGHG + L+PE V
Sbjct: 447 IVTKVACGVWHTAAVVEVTNEASEAEVDSSRGQVFTWGDGEKGQLGHGDNDTKLLPECVI 506
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L + V CG T +S G V++ G S + G+ + G
Sbjct: 507 SLTNE-NICQVACGHSLTVSRTSRGHVYTMG-----------STAYGQLGNPTA----KG 550
Query: 236 NGP---HGPKFQDPV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
N P G + V ++ACG+ H ++T ++++WG+G +G LG G + PA+V
Sbjct: 551 NFPERVEGDIVEASVEEIACGSYHVAVLTSKS-EIYTWGKGLNGQLGHGNVENKREPAVV 609
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 125/295 (42%), Gaps = 50/295 (16%)
Query: 17 IDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTVV----KVACGSEHVVA 71
D G +++WG + D G G SL S+ + + T+V +ACG H V
Sbjct: 243 FDALGDVFVWGES-ISDGVLSGTGNSLNSTTEDALLPKALESTIVLDAQNIACGKCHAVL 301
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
+ GE + SWG G+LG G +PK I + + CG FH
Sbjct: 302 VTKQGEIF--------SWGEGKGGKLGHGLETDAQKPKFISSVRG---LGFKSLACGDFH 350
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF 191
T +T + D+ W G LGHG S +P++V Q +Y+ V CG +
Sbjct: 351 TCAIT---QSGDLYS---WGDGTHNVDLLGHGNESSCWIPKRVTGDLQGLYVSDVACGPW 404
Query: 192 HTSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV 249
HT+VV+S+G ++++ G LG S + +++ ++++ +V
Sbjct: 405 HTAVVASSGQLFTFGDGTFGALGHGDRRSTSVPREVESLIGLIVT-------------KV 451
Query: 250 ACGAAHT---VLVTDDGY---------KLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
ACG HT V VT++ ++++WG G G LG G P V+
Sbjct: 452 ACGVWHTAAVVEVTNEASEAEVDSSRGQVFTWGDGEKGQLGHGDNDTKLLPECVI 506
>gi|281207411|gb|EFA81594.1| hypothetical protein PPL_05585 [Polysphondylium pallidum PN500]
Length = 624
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 110/244 (45%), Gaps = 41/244 (16%)
Query: 50 PVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK 109
P G V +ACG H +A++ D SWG N GQLGLGD+ +R P
Sbjct: 131 PTLIKQGLIVSMIACGDSHALAVLP-------NDATVLSWGCNRWGQLGLGDQVNRCHPT 183
Query: 110 IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
I +Q P V+ V GS H+ +L+ ++FG G G+LGHG +
Sbjct: 184 PISGLSQSIP--VF-VAAGSQHSFVLSKFGE--------LFSFGCGTFGRLGHGNELPSF 232
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASL-TRNEA 224
P + L ++VSV GL H++ V S G +++WG + GLG +L +N+
Sbjct: 233 NPRPISTLVGK-HIVSVAAGLMHSAAVDSQGALYTWGWNRYGQLGLGTVKKHTLPNKNKE 291
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
+ + V+V CG HT+++ +G+ ++S+G G LG G D
Sbjct: 292 LERF----------------NIVKVVCGKNHTLVLDVNGH-VYSFGFNVCGQLGIGSYTD 334
Query: 285 FFAP 288
P
Sbjct: 335 SIKP 338
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 113/277 (40%), Gaps = 39/277 (14%)
Query: 26 WGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLV 85
WG L D V+ P+P+ V VA GS+H L GE
Sbjct: 168 WGQLGLGDQ--------VNRCHPTPISGLSQSIPVFVAAGSQHSFVLSKFGE-------- 211
Query: 86 CYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
+S+G G+LG G+ P+ I T + V G H+A +
Sbjct: 212 LFSFGCGTFGRLGHGNELPSFNPRPISTL---VGKHIVSVAAGLMHSAAVDS-------- 260
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSW 205
+ +T+G GQLG GT + +P + KEL ++ +V V CG HT V+ G V+S+
Sbjct: 261 QGALYTWGWNRYGQLGLGTVKKHTLPNKNKELERF-NIVKVVCGKNHTLVLDVNGHVYSF 319
Query: 206 GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
G +C L D+I P I + + D +A G H +L+T G
Sbjct: 320 GFN----VC--GQLGIGSYTDSIKPNRIDLDLKQNDEIID---IAAGYYHVLLLTKKGC- 369
Query: 266 LWSWGRGRSGVLGTGKTIDFFA-PAIVLWPPLTEEFK 301
++S+G G LG G + + P ++ + EF
Sbjct: 370 VYSFGYISDGALGLGDVVGHQSRPKLMPFSHFNHEFN 406
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 103/252 (40%), Gaps = 51/252 (20%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT-PSPVWDFHGHTVVK 61
I SV AG M S A+D+ GAL+ WG + + G V T P+ + +VK
Sbjct: 244 HIVSVAAGLMHSAAVDSQGALYTWG----WNRYGQLGLGTVKKHTLPNKNKELERFNIVK 299
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
V CG H + L G YS+G N GQLG+G ++P I+ +
Sbjct: 300 VVCGKNHTLVLDVNGHV--------YSFGFNVCGQLGIGSYTDSIKPNRID-LDLKQNDE 350
Query: 122 VYEVTCGSFHTALLT-----------------------HRKRP------------NDMLE 146
+ ++ G +H LLT H+ RP ND ++
Sbjct: 351 IIDIAAGYYHVLLLTKKGCVYSFGYISDGALGLGDVVGHQSRPKLMPFSHFNHEFNDSID 410
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV--YLVSVDCGLFHTSVVSSAGDVWS 204
S +G + +A +P +V EL + V + G +H+++++S+G +++
Sbjct: 411 SYKEIYGEYNSDSENDINNNNAKLPPKVVELHNEIGDVAVKIAAGGWHSAIITSSGRLYT 470
Query: 205 WGMEKGLGLCPN 216
+G+ L N
Sbjct: 471 FGLGDNFRLGNN 482
>gi|270002050|gb|EEZ98497.1| hypothetical protein TcasGA2_TC000997 [Tribolium castaneum]
Length = 1042
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 27/206 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF--TPSPVWDFHGHTVV 60
Q+ + AG S+A+ NAG +++WG + + G ++ + TP+ V G
Sbjct: 138 QVVQIAAGQRHSVALTNAGEIFVWG----ANDFGQLGLGTITPYESTPTTVCSLSGIPFA 193
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+ACG+ H A+ +G + WG N NGQLGL D S+ P + T
Sbjct: 194 LIACGANHTFAVSKSG--------AVFGWGKNINGQLGLNDTVSKKFPTQLRTLRNSR-- 243
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++CG + LT L+ ++ G G GQLGHG T + ++P QV EL
Sbjct: 244 -VRFISCGDEFSTFLT--------LDGGVFSCGAGMYGQLGHGGTSNEILPRQVLELMGS 294
Query: 181 VYLVSVDCGLFHT-SVVSSAGDVWSW 205
+ + CG H+ + V S G V+S+
Sbjct: 295 T-ITQISCGRQHSLAFVPSRGRVYSY 319
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 114/254 (44%), Gaps = 48/254 (18%)
Query: 38 GGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQL 97
GG FTP + F +V+K A G+ H + L G+ YS G+N+ GQ
Sbjct: 15 GGIEEEHVFTPKALDWFEAKSVMKAALGANHTLFLTKDGKV--------YSCGSNDYGQ- 65
Query: 98 GLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN 157
LG + R RP+++ + +++ V CG H+ L+ E W G
Sbjct: 66 -LGHDQPRKRPQLVSGLDA---YSIINVACGEMHSLALSRWG------EVFSW--GSDNY 113
Query: 158 GQLGH---GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKG 210
GQLGH GT Q +VP+ +K L +Y +V + G H+ +++AG+++ WG + G
Sbjct: 114 GQLGHQLGGTLQ--IVPKLIKSLAKY-QVVQIAAGQRHSVALTNAGEIFVWGANDFGQLG 170
Query: 211 LG-LCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
LG + P S + P + +ACGA HT V+ G ++ W
Sbjct: 171 LGTITPYESTPTTVCSLSGIPFAL---------------IACGANHTFAVSKSG-AVFGW 214
Query: 270 GRGRSGVLGTGKTI 283
G+ +G LG T+
Sbjct: 215 GKNINGQLGLNDTV 228
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 125/299 (41%), Gaps = 48/299 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL--VSSFTPSPVWDFHGHTVVK 61
I +V G M SLA+ G ++ WG+ D+ + G L P + + VV+
Sbjct: 86 IINVACGEMHSLALSRWGEVFSWGS----DNYGQLGHQLGGTLQIVPKLIKSLAKYQVVQ 141
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+A G H VAL +AGE + WGAN+ GQLGLG P+A
Sbjct: 142 IAAGQRHSVALTNAGEIF--------VWGANDFGQLGLGTITPYESTPTTVCSLSGIPFA 193
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKELPQ 179
+ + CG+ HT ++ FG G+N GQLG T S P Q++ L +
Sbjct: 194 L--IACGANHTFAVSKSGA----------VFGWGKNINGQLGLNDTVSKKFPTQLRTL-R 240
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
+ + CG ++ ++ G V+S G + G G N L R S I
Sbjct: 241 NSRVRFISCGDEFSTFLTLDGGVFSCGAGMYGQLGHGGTSNEILPRQVLELMGSTI---- 296
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
Q++CG H++ +++S+G G +G LG K + P +VL P
Sbjct: 297 -----------TQISCGRQHSLAFVPSRGRVYSYGLGGAGQLGLRKPSNASTPQVVLGP 344
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 93/198 (46%), Gaps = 31/198 (15%)
Query: 87 YSWGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDM 144
+ WG+ +G+LGLG + E PK ++ F S V + G+ HT LT
Sbjct: 2 FGWGSTIHGELGLGGIEEEHVFTPKALDWFEAKS---VMKAALGANHTLFLTK------- 51
Query: 145 LESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+ ++ G + GQLGH Q P+ V L Y +++V CG H+ +S G+V+S
Sbjct: 52 -DGKVYSCGSNDYGQLGHD--QPRKRPQLVSGLDAYS-IINVACGEMHSLALSRWGEVFS 107
Query: 205 WGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG + LG +L I P LI K+Q VQ+A G H+V +T+
Sbjct: 108 WGSDNYGQLGHQLGGTL-------QIVPKLIKSLA----KYQ-VVQIAAGQRHSVALTNA 155
Query: 263 GYKLWSWGRGRSGVLGTG 280
G +++ WG G LG G
Sbjct: 156 G-EIFVWGANDFGQLGLG 172
>gi|354477678|ref|XP_003501046.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
[Cricetulus griseus]
Length = 1057
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCKKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ V CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQVACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 113/245 (46%), Gaps = 43/245 (17%)
Query: 53 DFHGHTVVK-VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
DF + V+ V CG H V ++ G Y+ G N+ GQ LG +SR +P+ +
Sbjct: 29 DFFANKKVRDVGCGLRHTVFVLDDG--------TVYTCGCNDLGQ--LGHEKSRKKPEQV 78
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-HGTTQSALV 170
+ + + V+CG HT L ND + W GL +GQLG G+ + V
Sbjct: 79 VALDAQN---IVAVSCGEAHTLAL------NDKGQVYSW--GLDSDGQLGLLGSEEYIRV 127
Query: 171 PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGD 226
P +K L + +V V CG +H+ +S A +V+ WG K GLG+ +
Sbjct: 128 PRNIKSLSD-IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGI---------DCKK 177
Query: 227 AISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFF 286
SP LI G F +QVA G AH+ ++T G ++ WGR + G LG D +
Sbjct: 178 QTSPQLIK--SLLGIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGLNDENDRY 231
Query: 287 APAIV 291
P ++
Sbjct: 232 VPNLL 236
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYSWG------LDSDGQLGLLGSEEYIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCKKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ QVACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASYGQLGLGGIDEEIVLEPRKSDFFANKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V+SWG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYSWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEEYIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASYGQLGLGGIDEEIVLEPRKSDFFANKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
+SWG G LG
Sbjct: 106 YSWGLDSDGQLG 117
>gi|48475110|gb|AAT44179.1| putative regulator of chromosome condensation protein [Oryza sativa
Japonica Group]
gi|52353417|gb|AAU43985.1| putative regulator of chromosome condensation protein [Oryza sativa
Japonica Group]
Length = 1064
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 134/304 (44%), Gaps = 48/304 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF----SLVSSFTPSPVW-DFH 55
+S + + G + + +G L+ WG D S G + VS + P V
Sbjct: 326 VSNVEYIACGEFHTCVVTASGDLYDWG-----DGSYNAGLLGHGTGVSHWLPKRVSGPLE 380
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G V+ VACGS H +S+G+ + ++G G LG GDRES PK +E
Sbjct: 381 GLQVLSVACGSWHSALTMSSGKLF--------TFGDGTFGSLGHGDRESVAYPKEVEAL- 431
Query: 116 QDSPWAVYEVTCGSFHTALLTH--RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
S + +V CG +H+A + + + + +T+G G+ +LGHG ++ LVP
Sbjct: 432 --SGFRAMKVACGVWHSAAIVEISGQASTNAMSRKLFTWGDGDKNRLGHGDKEAKLVPTC 489
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
V+ L + + V CG T ++++G V++ G N N D P ++
Sbjct: 490 VQALVDHNFH-QVACGHSMTVALATSGHVFTMGSS-------NNGQLGNPKADGKQPCMV 541
Query: 234 SGNGPHGPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
QD + +++CG+ H +T ++++WG G +G LG G D
Sbjct: 542 ----------QDKLGNELVEEISCGSNHVAALTSRS-EVYTWGMGANGRLGHGSVEDKKK 590
Query: 288 PAIV 291
P +V
Sbjct: 591 PTLV 594
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 126/290 (43%), Gaps = 45/290 (15%)
Query: 17 IDNAGALWMWGNCPLPDSSTEGGFSLVSSFT----PSPVWDFHGHTVVKVACGSEHVVAL 72
I++ G +++WG +EG + + S T P P+ V ++ACGS H+
Sbjct: 231 IESLGDVYVWGEVWTEVLPSEGSSNYLCSKTDFLIPKPLESDVVLDVQQIACGSRHIGLT 290
Query: 73 VSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHT 132
GE + +WG G+LG G RPK++E+ + V + CG FHT
Sbjct: 291 TRQGEVF--------TWGEELGGRLGHGTDTDICRPKLVESLAVSN---VEYIACGEFHT 339
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFH 192
++T D+ + W G G LGHGT S +P++V + + ++SV CG +H
Sbjct: 340 CVVT---ASGDLYD---WGDGSYNAGLLGHGTGVSHWLPKRVSGPLEGLQVLSVACGSWH 393
Query: 193 TSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
+++ S+G ++++ G LG S+ + +A+S ++VA
Sbjct: 394 SALTMSSGKLFTFGDGTFGSLGHGDRESVAYPKEVEALSGF-------------RAMKVA 440
Query: 251 CGAAHTVLVTDD---------GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
CG H+ + + KL++WG G LG G P V
Sbjct: 441 CGVWHSAAIVEISGQASTNAMSRKLFTWGDGDKNRLGHGDKEAKLVPTCV 490
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 23/174 (13%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
L+ WG+ D + G + P+ V H +VACG VAL ++G +
Sbjct: 465 LFTWGD---GDKNRLGHGDKEAKLVPTCVQALVDHNFHQVACGHSMTVALATSGHVF--- 518
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPN 142
+ G++NNGQLG + + +P +++ ++ V E++CGS H A LT R
Sbjct: 519 -----TMGSSNNGQLGNPKADGK-QPCMVQ--DKLGNELVEEISCGSNHVAALTSR---- 566
Query: 143 DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
S +T+G+G NG+LGHG+ + P V L ++ S+ CG T+ +
Sbjct: 567 ----SEVYTWGMGANGRLGHGSVEDKKKPTLVDALKDR-HVKSISCGSNFTTCI 615
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 102/259 (39%), Gaps = 28/259 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
Q+ SV G S ++G L+ +G+ + G S P V G +KV
Sbjct: 383 QVLSVACGSWHSALTMSSGKLFTFGDGTF---GSLGHGDRESVAYPKEVEALSGFRAMKV 439
Query: 63 ACGSEHVVALV--SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
ACG H A+V S + ++WG + +LG GD+E++L P ++ +
Sbjct: 440 ACGVWHSAAIVEISGQASTNAMSRKLFTWGDGDKNRLGHGDKEAKLVPTCVQALVDHN-- 497
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
++V CG T L +T G NGQLG+ P V++
Sbjct: 498 -FHQVACGHSMTVALA--------TSGHVFTMGSSNNGQLGNPKADGKQ-PCMVQDKLGN 547
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ + CG H + ++S +V++WGM N L D P L+
Sbjct: 548 ELVEEISCGSNHVAALTSRSEVYTWGMG------ANGRLGHGSVEDKKKPTLVD-----A 596
Query: 241 PKFQDPVQVACGAAHTVLV 259
K + ++CG+ T +
Sbjct: 597 LKDRHVKSISCGSNFTTCI 615
>gi|354477676|ref|XP_003501045.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
[Cricetulus griseus]
Length = 1049
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCKKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ V CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQVACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 113/245 (46%), Gaps = 43/245 (17%)
Query: 53 DFHGHTVVK-VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
DF + V+ V CG H V ++ G Y+ G N+ GQ LG +SR +P+ +
Sbjct: 29 DFFANKKVRDVGCGLRHTVFVLDDG--------TVYTCGCNDLGQ--LGHEKSRKKPEQV 78
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-HGTTQSALV 170
+ + + V+CG HT L ND + W GL +GQLG G+ + V
Sbjct: 79 VALDAQN---IVAVSCGEAHTLAL------NDKGQVYSW--GLDSDGQLGLLGSEEYIRV 127
Query: 171 PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGD 226
P +K L + +V V CG +H+ +S A +V+ WG K GLG+ +
Sbjct: 128 PRNIKSLSD-IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGI---------DCKK 177
Query: 227 AISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFF 286
SP LI G F +QVA G AH+ ++T G ++ WGR + G LG D +
Sbjct: 178 QTSPQLIK--SLLGIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGLNDENDRY 231
Query: 287 APAIV 291
P ++
Sbjct: 232 VPNLL 236
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYSWG------LDSDGQLGLLGSEEYIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCKKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ QVACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASYGQLGLGGIDEEIVLEPRKSDFFANKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V+SWG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYSWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEEYIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASYGQLGLGGIDEEIVLEPRKSDFFANKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
+SWG G LG
Sbjct: 106 YSWGLDSDGQLG 117
>gi|218782845|ref|YP_002434163.1| chromosome condensation regulator RCC1 [Desulfatibacillum
alkenivorans AK-01]
gi|218764229|gb|ACL06695.1| regulator of chromosome condensation RCC1 [Desulfatibacillum
alkenivorans AK-01]
Length = 437
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 126/287 (43%), Gaps = 44/287 (15%)
Query: 10 GGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHG-----HTVVKVAC 64
GG SL + N G +W WG+ +SS + G + + SPV H + V+KVA
Sbjct: 63 GGYHSLVVKNDGTVWAWGD----NSSGQLGIG-TNKASLSPVRVMHKSGAPLNGVLKVAA 117
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G H +AL + GE ++WG N+ GQLG G R P + + +
Sbjct: 118 GERHSLALTAKGEV--------WTWGDNSKGQLGDGFFYERRSPVKVRHIRTNPLENIVG 169
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
CG H+ + + W +G +GQ+G GT ++ P QV + + V
Sbjct: 170 AACGGKHSLAVAS--------DGTVWAWGSNSDGQIGDGTLKNRQNPRQVMRFGKPLAGV 221
Query: 185 -SVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILI--SGNGPH 239
+V G H+ +S G VW+WG + LG C + D +P+ + S + P
Sbjct: 222 KAVAAGFAHSLALSVDGTVWAWGDNEFGQLGDCSDY--------DRKAPVQVMHSVDRP- 272
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFF 286
+ V +A G A ++ +T DG ++W+WG G LG G F
Sbjct: 273 ---LDNVVAIAAGRAFSLALTRDG-EVWAWGNNGVGQLGMGPHNGFV 315
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 126/290 (43%), Gaps = 43/290 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT-- 58
++ + V AG SLA+ G +W WG+ +S + G SPV H T
Sbjct: 109 LNGVLKVAAGERHSLALTAKGEVWTWGD----NSKGQLGDGFFYERR-SPVKVRHIRTNP 163
Query: 59 ---VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
+V ACG +H +A+ S D ++WG+N++GQ+G G ++R P+ + F
Sbjct: 164 LENIVGAACGGKHSLAVAS--------DGTVWAWGSNSDGQIGDGTLKNRQNPRQVMRFG 215
Query: 116 QDSPWA-VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
+ P A V V G H+ L+ ++ W +G E GQLG + P QV
Sbjct: 216 K--PLAGVKAVAAGFAHSLALS--------VDGTVWAWGDNEFGQLGDCSDYDRKAPVQV 265
Query: 175 KELPQYVY--LVSVDCGLFHTSVVSSAGDVWSWGME--KGLGLCPNASLTRNEAGDAISP 230
+V++ G + ++ G+VW+WG LG+ P+ R+ P
Sbjct: 266 MHSVDRPLDNVVAIAAGRAFSLALTRDGEVWAWGNNGVGQLGMGPHNGFVRD-------P 318
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ + +G + + H++ + +DG L +WG G G LG G
Sbjct: 319 LPV--RAANGVPLKGVRAITANGRHSLALMNDGSVL-AWGAGDRGQLGQG 365
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 108/267 (40%), Gaps = 43/267 (16%)
Query: 32 PDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGA 91
P S E S P PVW A G H + + + D ++WG
Sbjct: 37 PRPSEEARTSARHRNAPHPVWGI-------AAGGGYHSLVVKN--------DGTVWAWGD 81
Query: 92 NNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWT 151
N++GQLG+G ++ L P + + V +V G H+ LT + WT
Sbjct: 82 NSSGQLGIGTNKASLSPVRVMHKSGAPLNGVLKVAAGERHSLALTAKGE--------VWT 133
Query: 152 FGLGENGQLGHGTTQSALVPEQVKELPQYVY--LVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+G GQLG G P +V+ + +V CG H+ V+S G VW+WG
Sbjct: 134 WGDNSKGQLGDGFFYERRSPVKVRHIRTNPLENIVGAACGGKHSLAVASDGTVWAWGSNS 193
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV----QVACGAAHTVLVTDDGYK 265
G + +L + +P + +F P+ VA G AH++ ++ DG
Sbjct: 194 D-GQIGDGTLKNRQ-----NPRQVM-------RFGKPLAGVKAVAAGFAHSLALSVDG-T 239
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+W+WG G LG D AP V+
Sbjct: 240 VWAWGDNEFGQLGDCSDYDRKAPVQVM 266
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 88/259 (33%), Gaps = 71/259 (27%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHG--HT 58
+ I GG SLA+ + G +W WG+ G +L + P V F
Sbjct: 164 LENIVGAACGGKHSLAVASDGTVWAWGSN---SDGQIGDGTLKNRQNPRQVMRFGKPLAG 220
Query: 59 VVKVACGSEHVVAL--------------------------------------------VS 74
V VA G H +AL ++
Sbjct: 221 VKAVAAGFAHSLALSVDGTVWAWGDNEFGQLGDCSDYDRKAPVQVMHSVDRPLDNVVAIA 280
Query: 75 AGETYK---GEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAVYEVTCGSF 130
AG + D ++WG N GQLG+G +R P + N V +T
Sbjct: 281 AGRAFSLALTRDGEVWAWGNNGVGQLGMGPHNGFVRDPLPVRAANGVPLKGVRAITANGR 340
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC-- 188
H+ L M + +G G+ GQLG G + ++ P L SV C
Sbjct: 341 HSLAL--------MNDGSVLAWGAGDRGQLGQGA-------QNHEDHPTLASLHSVICLA 385
Query: 189 -GLFHTSVVSSAGDVWSWG 206
G +H+ V+ G V +WG
Sbjct: 386 AGRYHSLAVAENGAVLAWG 404
>gi|145597074|ref|YP_001161371.1| hypothetical protein Strop_4565 [Salinispora tropica CNB-440]
gi|145306411|gb|ABP56993.1| hypothetical protein Strop_4565 [Salinispora tropica CNB-440]
Length = 477
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 125/302 (41%), Gaps = 53/302 (17%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
+ I ++ AG SLA+ +AG WGN L D ST S TP V G T
Sbjct: 105 TTITAIAAGHDHSLAVTSAGTALAWGNNLFGQLGDGST------TDSSTPIAVDLPAGTT 158
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +A G +H +A+ SAG +WG N+ G+LG G R P + D
Sbjct: 159 VTAIAAGDDHSLAVTSAG--------TALAWGDNDRGELGDGTTTRRDTP-----VDVDL 205
Query: 119 P--WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
P V + G H+ LT T+GL +GQLG GTT + P V +
Sbjct: 206 PAGTTVTAIAAGIGHSLALTS--------AGTVLTWGLNSDGQLGDGTTTDSSTPIAV-D 256
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPIL 232
LP + ++ G H+ V++AG + +WG G G N+S +PI
Sbjct: 257 LPAGTTVTAIAAGSLHSLAVTTAGTILAWGNNSDGQLGDGTTTNSS----------TPIA 306
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ + P + G H++ VT G L +WG G LG G T + P V
Sbjct: 307 V-----NLPASTTITAIDGGRDHSLAVTSAGSAL-AWGDNDDGQLGDGTTTNSSTPIAVN 360
Query: 293 WP 294
P
Sbjct: 361 LP 362
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 123/297 (41%), Gaps = 43/297 (14%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+ + ++ AG SLA+ +AG WG+ D G + TP V G TV
Sbjct: 157 TTVTAIAAGDDHSLAVTSAGTALAWGDN---DRGELGDGTTTRRDTPVDVDLPAGTTVTA 213
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+A G H +AL SAG +WG N++GQLG G P ++ +
Sbjct: 214 IAAGIGHSLALTSAG--------TVLTWGLNSDGQLGDGTTTDSSTPIAVDLPAGTT--- 262
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V + GS H+ +T + W G +GQLG GTT ++ P V LP
Sbjct: 263 VTAIAAGSLHSLAVTTAG------TILAW--GNNSDGQLGDGTTTNSSTPIAVN-LPAST 313
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWG----MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ ++D G H+ V+SAG +WG + G G N+S +PI +
Sbjct: 314 TITAIDGGRDHSLAVTSAGSALAWGDNDDGQLGDGTTTNSS----------TPIAV---- 359
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
+ P G+ H++ VT G L +WG G LG G T + P V P
Sbjct: 360 -NLPADTTVTATTAGSLHSLAVTTAGTIL-AWGNNSDGRLGDGTTTNSSTPIAVNLP 414
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 110/266 (41%), Gaps = 32/266 (12%)
Query: 38 GGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQL 97
G + S TP V G T+ +A G +H +A+ SAG +WG N GQL
Sbjct: 86 GDGTTTDSSTPIAVDLPAGTTITAIAAGHDHSLAVTSAG--------TALAWGNNLFGQL 137
Query: 98 GLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN 157
G G P ++ + V + G H+ +T ++ W G +
Sbjct: 138 GDGSTTDSSTPIAVDLPAGTT---VTAIAAGDDHSLAVTSAG------TALAW--GDNDR 186
Query: 158 GQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNA 217
G+LG GTT P V +LP + ++ G+ H+ ++SAG V +WG+ +
Sbjct: 187 GELGDGTTTRRDTPVDV-DLPAGTTVTAIAAGIGHSLALTSAGTVLTWGLNS------DG 239
Query: 218 SLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
L D+ +PI + + P G +A G+ H++ VT G L +WG G L
Sbjct: 240 QLGDGTTTDSSTPIAV--DLPAGTTV---TAIAAGSLHSLAVTTAGTIL-AWGNNSDGQL 293
Query: 278 GTGKTIDFFAPAIVLWPPLTEEFKQD 303
G G T + P V P T D
Sbjct: 294 GDGTTTNSSTPIAVNLPASTTITAID 319
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 35/224 (15%)
Query: 76 GETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL 135
G + D V +WG N +G+LG G T + +P AV ++ G+ TA+
Sbjct: 65 GPSRDASDTV-LAWGDNKDGELGDG-----------TTTDSSTPIAV-DLPAGTTITAIA 111
Query: 136 T---HRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
H ++ W G N GQLG G+T + P V +LP + ++ G
Sbjct: 112 AGHDHSLAVTSAGTALAW----GNNLFGQLGDGSTTDSSTPIAV-DLPAGTTVTAIAAGD 166
Query: 191 FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
H+ V+SAG +WG + G + + TR + +P+ + + P G +A
Sbjct: 167 DHSLAVTSAGTALAWG-DNDRGELGDGTTTRRD-----TPVDV--DLPAGTTV---TAIA 215
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
G H++ +T G L +WG G LG G T D P V P
Sbjct: 216 AGIGHSLALTSAGTVL-TWGLNSDGQLGDGTTTDSSTPIAVDLP 258
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 23/192 (11%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+ + ++ AG + SLA+ AG + WGN G + +S TP V T+
Sbjct: 261 TTVTAIAAGSLHSLAVTTAGTILAWGNN---SDGQLGDGTTTNSSTPIAVNLPASTTITA 317
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ G +H +A+ SAG +WG N++GQLG G + P + N +
Sbjct: 318 IDGGRDHSLAVTSAGS--------ALAWGDNDDGQLGDGTTTNSSTPIAV---NLPADTT 366
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V T GS H+ +T + W G +G+LG GTT ++ P V LP
Sbjct: 367 VTATTAGSLHSLAVTTAG------TILAW--GNNSDGRLGDGTTTNSSTPIAVN-LPADT 417
Query: 182 YLVSVDCGLFHT 193
+ + G H+
Sbjct: 418 TVTATTAGSAHS 429
>gi|148700105|gb|EDL32052.1| hect domain and RLD 4, isoform CRA_b [Mus musculus]
Length = 1066
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 147 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCQKQTSPQLIKSLLGIPFMQV 204
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 205 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 254
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 255 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 304
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ V CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 305 VTQVACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 353
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 130/297 (43%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L S P + +
Sbjct: 95 IVAVACGEAHTLALNDKGQVYAWG------LDSDGQLGLQGSEECIRVPRNIKSLSDIQI 148
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 149 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCQKQTSPQLIKSL-LGI 199
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 200 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 248
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 249 RSQKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV----- 297
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ QVACG HT +++S+G G +G LGTG T + +P V
Sbjct: 298 ----FELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 350
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 103/252 (40%), Gaps = 68/252 (26%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL----------- 135
WG + GQLGLG D E L P+ + F V +V CG HT +
Sbjct: 13 WGNASYGQLGLGGIDEEIVLEPRRSDFFVNKK---VRDVGCGLRHTVFVLDDGTVYTCGC 69
Query: 136 ---------THRKRPNDML----------------------ESMCWTFGLGENGQLG-HG 163
RK+P ++ + + +GL +GQLG G
Sbjct: 70 NDLGQLGHEKSRKKPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQLGLQG 129
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASL 219
+ + VP +K L + +V V CG +H+ +S A +V+ WG K GLG+
Sbjct: 130 SEECIRVPRNIKSLSD-IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGI------ 182
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
+ SP LI G F +QVA G AH+ ++T G ++ WGR + G LG
Sbjct: 183 ---DCQKQTSPQLIK--SLLGIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGL 233
Query: 280 GKTIDFFAPAIV 291
D + P ++
Sbjct: 234 NDENDRYVPNLL 245
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E + + + V CGL HT V G V++ G
Sbjct: 11 LCW--GNASYGQLGLGGIDEEIVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 68
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V VACG AHT+ + D G ++
Sbjct: 69 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVACGEAHTLALNDKG-QV 114
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 115 YAWGLDSDGQLG 126
>gi|312433980|ref|NP_084390.1| probable E3 ubiquitin-protein ligase HERC4 isoform 1 [Mus musculus]
gi|126215720|sp|Q6PAV2.2|HERC4_MOUSE RecName: Full=Probable E3 ubiquitin-protein ligase HERC4; AltName:
Full=HECT domain and RCC1-like domain-containing protein
4
Length = 1057
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCQKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ V CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQVACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 130/297 (43%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L S P + +
Sbjct: 86 IVAVACGEAHTLALNDKGQVYAWG------LDSDGQLGLQGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCQKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ QVACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 103/252 (40%), Gaps = 68/252 (26%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL----------- 135
WG + GQLGLG D E L P+ + F V +V CG HT +
Sbjct: 4 WGNASYGQLGLGGIDEEIVLEPRRSDFFVNKK---VRDVGCGLRHTVFVLDDGTVYTCGC 60
Query: 136 ---------THRKRPNDML----------------------ESMCWTFGLGENGQLG-HG 163
RK+P ++ + + +GL +GQLG G
Sbjct: 61 NDLGQLGHEKSRKKPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQLGLQG 120
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASL 219
+ + VP +K L + +V V CG +H+ +S A +V+ WG K GLG+
Sbjct: 121 SEECIRVPRNIKSLSD-IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGI------ 173
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
+ SP LI G F +QVA G AH+ ++T G ++ WGR + G LG
Sbjct: 174 ---DCQKQTSPQLIK--SLLGIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGL 224
Query: 280 GKTIDFFAPAIV 291
D + P ++
Sbjct: 225 NDENDRYVPNLL 236
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E + + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASYGQLGLGGIDEEIVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V VACG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVACGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|345795045|ref|XP_544717.3| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
ligase HERC1 isoform 1 [Canis lupus familiaris]
Length = 4861
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 181/450 (40%), Gaps = 83/450 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ ++ S K +LA G ++ WG+ D G G S + G V
Sbjct: 457 IKKVSSSKGSDGHTLAFTTEGEVFSWGD---GDYGKLGHGNSSTQKYPKLIQGPLQGKVV 513
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ GE Y +WG + G+LG GD SR P +++ +
Sbjct: 514 VCVSAGYRHSAAVTEDGELY--------TWGEGDFGRLGHGDSNSRNIPTLVKDISN--- 562
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V EV+CGS HT L+ R W+FG G+NG+LGHG T P+ V+ L Q
Sbjct: 563 --VGEVSCGSSHTIALSKDGR-------TVWSFGGGDNGKLGHGDTNRVYKPKVVEAL-Q 612
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ V G + ++S G V++WG LG C ++ T A+ P LI
Sbjct: 613 GMFIRKVCAGSQSSLALTSTGQVYAWGCGACLG-CGSSEAT------ALRPKLIEELAA- 664
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V ++ G + + + D ++++WG G G G + P+T+
Sbjct: 665 ----TRIVDISIGDSXCLALRHDN-EVYAWGNNSMGQCGQGNSTG----------PITKP 709
Query: 300 FKQDELNTGGLDDEIKTKDLEG---------AEERDEKLSS-------AMEEMKLLQSKL 343
K GLD I + + A RD ++ + +EE +
Sbjct: 710 KK-----VSGLDG-IAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLR- 762
Query: 344 SVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDIT-KEWENMLESA-----DRSKLV 397
S +ERY ++ I PF P S + F + K N L A S L
Sbjct: 763 SFLERYCDKINSEIPPLPF------PSSREHHNFLKLCLKLLSNHLALALAGGVATSILG 816
Query: 398 RLERFYRNMLAGVKDKLMKRRIQEIVNECL 427
R RN+L + D + IQE+V E L
Sbjct: 817 RQAGPLRNLLFRLMDSTVPDEIQEVVIETL 846
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 4094 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 4150
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 4151 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 4199
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 4200 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 4251
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 4252 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 4300
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P +V
Sbjct: 4301 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 4337
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 21/202 (10%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ K + S V HT T E
Sbjct: 428 GKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFT--------TEGEV 479
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ Q +V V G H++ V+ G++++WG
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGD 539
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L S +RN P L+ G +V+CG++HT+ ++ DG +WS+
Sbjct: 540 FGRLGHGDSNSRN------IPTLVKDISNVG-------EVSCGSSHTIALSKDGRTVWSF 586
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G +G LG G T + P +V
Sbjct: 587 GGGDNGKLGHGDTNRVYKPKVV 608
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 4241 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 4294
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 4295 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 4344
Query: 121 AVYEVTCGSFHTALLT 136
+ +++ G H+A T
Sbjct: 4345 -IRQISAGRCHSAAWT 4359
>gi|74226109|dbj|BAE25272.1| unnamed protein product [Mus musculus]
Length = 1057
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCQKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ V CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQVACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 130/297 (43%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L S P + +
Sbjct: 86 IVAVACGEAHTLALNDKGQVYAWG------LDSDGQLGLQGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCQKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ QVACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 103/252 (40%), Gaps = 68/252 (26%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL----------- 135
WG + GQLGLG D E L P+ + F V +V CG HT +
Sbjct: 4 WGNASYGQLGLGGIDEEIVLEPRRSDFFVNKK---VRDVGCGLRHTVFVLDDGTVYTCGC 60
Query: 136 ---------THRKRPNDML----------------------ESMCWTFGLGENGQLG-HG 163
RK+P ++ + + +GL +GQLG G
Sbjct: 61 NDLGQLGHEKSRKKPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQLGLQG 120
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASL 219
+ + VP +K L + +V V CG +H+ +S A +V+ WG K GLG+
Sbjct: 121 SEECIRVPRNIKSLSD-IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGI------ 173
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
+ SP LI G F +QVA G AH+ ++T G ++ WGR + G LG
Sbjct: 174 ---DCQKQTSPQLIK--SLLGIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGL 224
Query: 280 GKTIDFFAPAIV 291
D + P ++
Sbjct: 225 NDENDRYVPNLL 236
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E + + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASYGQLGLGGIDEEIVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V VACG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVACGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|281207647|gb|EFA81827.1| putative protein serine/threonine kinase [Polysphondylium pallidum
PN500]
Length = 1626
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 122/260 (46%), Gaps = 37/260 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ ++ AG + ID++GAL+ WG D G + + P+ V +GH VV V
Sbjct: 238 RLVALDAGASRAAVIDSSGALFTWGRG---DHGRLGHGDTENRYQPTLVSSLYGHVVVAV 294
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES-RLRPKIIETFNQDSPWA 121
A G H +AL AGE +SWG NGQLG G +S +L PK ++ F D P
Sbjct: 295 ALGGGHSLALTKAGE--------LFSWGRGENGQLGHGSYQSQQLAPKQLQFF-VDMP-K 344
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL--VPEQVKELPQ 179
+ ++ G +H+ + + + +G+ + G LG G + +P+++ +P+
Sbjct: 345 IIGISAGGYHSVA--------QLDDGSVYAWGMSDYGILGTGDSDDGAINIPQRIL-MPR 395
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ ++ CG HT ++S ++SWG GLG L + +PI +
Sbjct: 396 GIRFKTISCGFQHTVALTSDNTIYSWGC--GLG----GRLGTFNEKNQCAPI-----ACN 444
Query: 240 GPKFQDPVQVACGAAHTVLV 259
P +Q PV + G T+++
Sbjct: 445 IPNYQ-PVVFSAGEISTIVI 463
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 125/287 (43%), Gaps = 37/287 (12%)
Query: 7 VKAGGMMSLAIDNAGA--LWMWGNCPLPDSSTEGGFSLVSSFT--PSPVWDFHGHTVVKV 62
V GG ++A+ + L+ WGN G FT P V +V +
Sbjct: 186 VFCGGRSTIALSHTAGSGLYTWGNNEF---GQLGRGDCGDDFTCLPESVAVPGAKRLVAL 242
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
G+ + S+G ++WG ++G+LG GD E+R +P ++ + V
Sbjct: 243 DAGASRAAVIDSSG--------ALFTWGRGDHGRLGHGDTENRYQPTLVSSL---YGHVV 291
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA-LVPEQVKELPQYV 181
V G H+ LT +++G GENGQLGHG+ QS L P+Q++
Sbjct: 292 VAVALGGGHSLALTKAGE--------LFSWGRGENGQLGHGSYQSQQLAPKQLQFFVDMP 343
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++ + G +H+ G V++WGM G+ L ++ D I P G
Sbjct: 344 KIIGISAGGYHSVAQLDDGSVYAWGMS-DYGI-----LGTGDSDDGAINIPQRILMPRGI 397
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+F+ ++CG HTV +T D ++SWG G G LGT + AP
Sbjct: 398 RFK---TISCGFQHTVALTSDN-TIYSWGCGLGGRLGTFNEKNQCAP 440
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 110/246 (44%), Gaps = 43/246 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
++ V G+ H+ + +G+ ++WG G+LG GD ES PK + +
Sbjct: 131 IILVNAGAAHIAMISQSGK--------LFTWGEGQYGRLGHGDEESISTPKQVVAL---A 179
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL--VPEQVKE 176
+ V CG T L+H S +T+G E GQLG G +PE V
Sbjct: 180 NIPMKYVFCGGRSTIALSHTAG------SGLYTWGNNEFGQLGRGDCGDDFTCLPESVA- 232
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+P LV++D G +V+ S+G +++WG +G + L + + P L+S
Sbjct: 233 VPGAKRLVALDAGASRAAVIDSSGALFTWG--RG----DHGRLGHGDTENRYQPTLVSSL 286
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG---------KTIDFFA 287
H V VA G H++ +T G +L+SWGRG +G LG G K + FF
Sbjct: 287 YGHV-----VVAVALGGGHSLALTKAG-ELFSWGRGENGQLGHGSYQSQQLAPKQLQFFV 340
Query: 288 --PAIV 291
P I+
Sbjct: 341 DMPKII 346
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 17/112 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPL----PDSSTEGGFSLVSSFTPSPVWDFHG 56
M +I + AGG S+A + G+++ WG S +G ++ P + G
Sbjct: 342 MPKIIGISAGGYHSVAQLDDGSVYAWGMSDYGILGTGDSDDGAINI-----PQRILMPRG 396
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
++CG +H VAL S D YSWG G+LG + +++ P
Sbjct: 397 IRFKTISCGFQHTVALTS--------DNTIYSWGCGLGGRLGTFNEKNQCAP 440
>gi|149689920|ref|XP_001503636.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
2 [Equus caballus]
Length = 1057
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDYKKQASPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ +
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYFPNLLKSLRTQK---I 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 245 VYICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 130/297 (43%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDYKKQASPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG P +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYFPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RTQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 93/202 (46%), Gaps = 35/202 (17%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + H +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFVLH--------D 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTGKTIDF 285
+++ WG+ + G LG G ID+
Sbjct: 156 SEVFCWGQNKYGQLGLG--IDY 175
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLHDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWG---RGRSGVLGTGKTI 283
++WG G+ G+LG+ + I
Sbjct: 106 YAWGLDSDGQLGLLGSEECI 125
>gi|32451488|ref|NP_080377.2| probable E3 ubiquitin-protein ligase HERC4 isoform 2 [Mus musculus]
gi|29144941|gb|AAH43082.1| Hect domain and RLD 4 [Mus musculus]
gi|74188723|dbj|BAE28095.1| unnamed protein product [Mus musculus]
gi|148700106|gb|EDL32053.1| hect domain and RLD 4, isoform CRA_c [Mus musculus]
Length = 1049
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCQKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ V CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQVACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 130/297 (43%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L S P + +
Sbjct: 86 IVAVACGEAHTLALNDKGQVYAWG------LDSDGQLGLQGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCQKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ QVACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 103/252 (40%), Gaps = 68/252 (26%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL----------- 135
WG + GQLGLG D E L P+ + F V +V CG HT +
Sbjct: 4 WGNASYGQLGLGGIDEEIVLEPRRSDFFVNKK---VRDVGCGLRHTVFVLDDGTVYTCGC 60
Query: 136 ---------THRKRPNDML----------------------ESMCWTFGLGENGQLG-HG 163
RK+P ++ + + +GL +GQLG G
Sbjct: 61 NDLGQLGHEKSRKKPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQLGLQG 120
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASL 219
+ + VP +K L + +V V CG +H+ +S A +V+ WG K GLG+
Sbjct: 121 SEECIRVPRNIKSLSD-IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGI------ 173
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
+ SP LI G F +QVA G AH+ ++T G ++ WGR + G LG
Sbjct: 174 ---DCQKQTSPQLIK--SLLGIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGL 224
Query: 280 GKTIDFFAPAIV 291
D + P ++
Sbjct: 225 NDENDRYVPNLL 236
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E + + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASYGQLGLGGIDEEIVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V VACG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVACGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|348508280|ref|XP_003441682.1| PREDICTED: leucine-rich repeat and WD repeat-containing protein
KIAA1239-like [Oreochromis niloticus]
Length = 2697
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 138/311 (44%), Gaps = 56/311 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV----SSFTPSPVWDFHG 56
+ + ++ G LA+ +G ++ WG + +G L+ SS PS V
Sbjct: 1760 LGSVVAMACGQDHCLAVSASGHVFSWG------AGEDGQLGLLPTPSSSHRPSKVPIPLP 1813
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFN 115
+++VACG+ H +AL G+ + SWG N++GQLGLG + P II
Sbjct: 1814 IPIIQVACGNSHSLALTKGGDVF--------SWGLNSHGQLGLGKEVPVQHTPVIICAL- 1864
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG------HGTTQSAL 169
+ AV ++ G H+ LT L + + G + GQLG G +
Sbjct: 1865 --AGVAVTQIAAGGTHSLFLT--------LADLVYCCGANKCGQLGVNRVDEKGRFNICM 1914
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
VP P V +S CG H++V++ G V+++G L + + + +
Sbjct: 1915 VPAL---RPLSVSFIS--CGESHSAVLTKDGKVYTFGDGS------QGQLGHSTSANEVK 1963
Query: 230 PILISG-NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
P L++G +GP Q+ACG HT+++ G +LW++G G G G G P
Sbjct: 1964 PKLVAGLDGPAS-------QIACGRHHTLVLGSSG-QLWAFGSGAKGQTGNGHNDSCLTP 2015
Query: 289 AIVLWPPLTEE 299
+V +P T++
Sbjct: 2016 TLVQFPWTTDD 2026
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 94/218 (43%), Gaps = 35/218 (16%)
Query: 77 ETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLT 136
E G D+ + WG +++GQ G S + + P + ++ CG HT L
Sbjct: 1676 EDPSGGDMQLFCWGDSSSGQFGPQAAPSPVSWTV--------PGVITKICCGDRHTLFLN 1727
Query: 137 HRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
+ + G GQLG ++ + QV+ L +V++ CG H V
Sbjct: 1728 --------ADGNVLSCGHNSQGQLGRQKKKNGKIIAQVEALGS---VVAMACGQDHCLAV 1776
Query: 197 SSAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAA 254
S++G V+SWG E G LGL P S + + I + +QVACG +
Sbjct: 1777 SASGHVFSWGAGEDGQLGLLPTPSSSHRPSKVPIPLPIPI------------IQVACGNS 1824
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF-FAPAIV 291
H++ +T G ++SWG G LG GK + P I+
Sbjct: 1825 HSLALTKGG-DVFSWGLNSHGQLGLGKEVPVQHTPVII 1861
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 134/315 (42%), Gaps = 78/315 (24%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACGSEHVVALVSAGETYKG 81
L+ WG+ S+ G F ++ PSPV W G + K+ CG H + L + G
Sbjct: 1685 LFCWGD------SSSGQFGPQAA--PSPVSWTVPG-VITKICCGDRHTLFLNADGNVL-- 1733
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
S G N+ GQLG R+ + KII ++ +V + CG H ++
Sbjct: 1734 ------SCGHNSQGQLG---RQKKKNGKIIAQV--EALGSVVAMACGQDHCLAVS----- 1777
Query: 142 NDMLESMCWTFGLGENGQLGH-GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAG 200
+++G GE+GQLG T S+ P +V + ++ V CG H+ ++ G
Sbjct: 1778 ---ASGHVFSWGAGEDGQLGLLPTPSSSHRPSKVPIP-LPIPIIQVACGNSHSLALTKGG 1833
Query: 201 DVWSWGM----EKGLG-----------LCPNA--SLTRNEAGDAISPILISGN------- 236
DV+SWG+ + GLG +C A ++T+ AG S L +
Sbjct: 1834 DVFSWGLNSHGQLGLGKEVPVQHTPVIICALAGVAVTQIAAGGTHSLFLTLADLVYCCGA 1893
Query: 237 ---GPHGPKFQD--------------PVQV---ACGAAHTVLVTDDGYKLWSWGRGRSGV 276
G G D P+ V +CG +H+ ++T DG K++++G G G
Sbjct: 1894 NKCGQLGVNRVDEKGRFNICMVPALRPLSVSFISCGESHSAVLTKDG-KVYTFGDGSQGQ 1952
Query: 277 LGTGKTIDFFAPAIV 291
LG + + P +V
Sbjct: 1953 LGHSTSANEVKPKLV 1967
>gi|149689922|ref|XP_001503631.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
1 [Equus caballus]
Length = 1049
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDYKKQASPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ +
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYFPNLLKSLRTQK---I 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 245 VYICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 130/297 (43%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDYKKQASPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG P +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYFPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RTQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 93/202 (46%), Gaps = 35/202 (17%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + H +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFVLH--------D 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTGKTIDF 285
+++ WG+ + G LG G ID+
Sbjct: 156 SEVFCWGQNKYGQLGLG--IDY 175
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLHDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWG---RGRSGVLGTGKTI 283
++WG G+ G+LG+ + I
Sbjct: 106 YAWGLDSDGQLGLLGSEECI 125
>gi|428172054|gb|EKX40966.1| hypothetical protein GUITHDRAFT_46944, partial [Guillardia theta
CCMP2712]
Length = 355
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 133/341 (39%), Gaps = 81/341 (23%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG--GFSLVSS--FTPSPVWDFHGHTVVK 61
S+ AG S I G ++ WG EG G +V+ P V
Sbjct: 40 SIGAGKSHSAVIAEDGDVYTWGR------GWEGQLGHDVVTEIELEPHIVPKMENRGSSA 93
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET-FNQDSPW 120
VACG H V + G + Y+WG N GQLG GD +S P +I++ N S
Sbjct: 94 VACGRNHTVVVTDNG--------LIYTWGENKAGQLGTGDLKSSNSPVLIDSALNLPS-- 143
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + CG FHT + +E W++G + GQLGHG T++ P QV + +
Sbjct: 144 -VLSIACGEFHTVAIC--------IEGTIWSWGRNQCGQLGHGNTKTCYFPTQVVGMAKK 194
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGL------------------------- 211
+ + CG HT V++ A +++WG + GL
Sbjct: 195 I-CIRAACGGQHTLVLTDANKIYAWGSNAYGQLGLNRSDKAVLQPDIVDHLRRSGACHVL 253
Query: 212 -GLCPNASLTRNEA----GDAISPILISGNGPHGP--------KFQDPVQVACGAAHTVL 258
G + +L +NE G L G+ H P + Q+ACG H V
Sbjct: 254 CGYSHSMALMKNEQIYTWGRNDCGQLGLGHYTHSPVPELVTALRSVRVQQIACGYDHCVA 313
Query: 259 VTDDGYK--------LWSWGRGRSGVLGTGKTIDFFAPAIV 291
D + ++SWGRG G LG + + P IV
Sbjct: 314 FVADEVEPGMPPLEHVYSWGRGEEGQLGHNELLSRCTPRIV 354
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 94/208 (45%), Gaps = 22/208 (10%)
Query: 87 YSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
YSWG N GQLGLG + P I+ + + V + G H+A++
Sbjct: 2 YSWGKNKYGQLGLGHTNNVPLPTGILSLSDPLNRKNVRSIGAGKSHSAVIAE-------- 53
Query: 146 ESMCWTFGLGENGQLGHGT-TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+ +T+G G GQLGH T+ L P V ++ +V CG HT VV+ G +++
Sbjct: 54 DGDVYTWGRGWEGQLGHDVVTEIELEPHIVPKMENRGS-SAVACGRNHTVVVTDNGLIYT 112
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG K L + + SP+LI + +ACG HTV + +G
Sbjct: 113 WGENKA------GQLGTGDLKSSNSPVLIDS----ALNLPSVLSIACGEFHTVAICIEG- 161
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+WSWGR + G LG G T + P V+
Sbjct: 162 TIWSWGRNQCGQLGHGNTKTCYFPTQVV 189
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 32/237 (13%)
Query: 70 VALVSAGETYKG---EDLVCYSWGANNNGQLGLGD-RESRLRPKIIETFNQDSPWAVYEV 125
V + AG+++ ED Y+WG GQLG E L P I+ AV
Sbjct: 38 VRSIGAGKSHSAVIAEDGDVYTWGRGWEGQLGHDVVTEIELEPHIVPKMENRGSSAV--- 94
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CG HT ++T + +T+G + GQLG G +S+ P + ++S
Sbjct: 95 ACGRNHTVVVTD--------NGLIYTWGENKAGQLGTGDLKSSNSPVLIDSALNLPSVLS 146
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
+ CG FHT + G +WSWG + C L P + G +
Sbjct: 147 IACGEFHTVAICIEGTIWSWGRNQ----C--GQLGHGNTKTCYFPTQVVGMAK-----KI 195
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQ 302
++ ACG HT+++T D K+++WG G LG ++ VL P + + ++
Sbjct: 196 CIRAACGGQHTLVLT-DANKIYAWGSNAYGQLGLNRS-----DKAVLQPDIVDHLRR 246
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 24/193 (12%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + S+ G ++AI G +W WG G + + + P+ V +
Sbjct: 141 LPSVLSIACGEFHTVAICIEGTIWSWGR---NQCGQLGHGNTKTCYFPTQVVGMAKKICI 197
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE-SRLRPKIIETFNQDSP 119
+ ACG +H + L A + Y+WG+N GQLGL + + L+P I++ +
Sbjct: 198 RAACGGQHTLVLTDANKI--------YAWGSNAYGQLGLNRSDKAVLQPDIVDHLRRS-- 247
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V CG H+ L M +T+G + GQLG G + VPE V L +
Sbjct: 248 -GACHVLCGYSHSMAL--------MKNEQIYTWGRNDCGQLGLGHYTHSPVPELVTAL-R 297
Query: 180 YVYLVSVDCGLFH 192
V + + CG H
Sbjct: 298 SVRVQQIACGYDH 310
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 73/179 (40%), Gaps = 23/179 (12%)
Query: 3 QICSVKA-GGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGH 57
+IC A GG +L + +A ++ WG S+ G L S P V
Sbjct: 194 KICIRAACGGQHTLVLTDANKIYAWG------SNAYGQLGLNRSDKAVLQPDIVDHLRRS 247
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V CG H +AL+ K E + Y+WG N+ GQLGLG P+++
Sbjct: 248 GACHVLCGYSHSMALM------KNEQI--YTWGRNDCGQLGLGHYTHSPVPELVTALRSV 299
Query: 118 SPWAVYEVTCGSFH-TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V ++ CG H A + P +++G GE GQLGH S P V+
Sbjct: 300 R---VQQIACGYDHCVAFVADEVEPGMPPLEHVYSWGRGEEGQLGHNELLSRCTPRIVE 355
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S C V G S+A+ ++ WG D G S P V V +
Sbjct: 247 SGACHVLCGYSHSMALMKNEQIYTWGR---NDCGQLGLGHYTHSPVPELVTALRSVRVQQ 303
Query: 62 VACGSEHVVALVSAGETYKGEDLV--CYSWGANNNGQLGLGDRESRLRPKIIE 112
+ACG +H VA V A E G + YSWG GQLG + SR P+I+E
Sbjct: 304 IACGYDHCVAFV-ADEVEPGMPPLEHVYSWGRGEEGQLGHNELLSRCTPRIVE 355
>gi|115461450|ref|NP_001054325.1| Os04g0686200 [Oryza sativa Japonica Group]
gi|38345822|emb|CAD41927.2| OSJNBa0070M12.5 [Oryza sativa Japonica Group]
gi|113565896|dbj|BAF16239.1| Os04g0686200 [Oryza sativa Japonica Group]
gi|222629813|gb|EEE61945.1| hypothetical protein OsJ_16701 [Oryza sativa Japonica Group]
Length = 1057
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 133/295 (45%), Gaps = 34/295 (11%)
Query: 4 ICSVKA---GGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTV 59
IC+V+ G + AI G L+ WG+ ++ G S VS + P V G V
Sbjct: 312 ICNVETIACGEFHTCAITATGDLYTWGD-GTHNAGLLGHGSNVSHWIPKRVSGPLEGLQV 370
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V+CG+ H + S+G+ Y++G G LG G+RE+ PK +E+
Sbjct: 371 SAVSCGTWHTALITSSGK--------LYTFGDGTFGVLGHGNRETISYPKEVESLKG--- 419
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLES-MCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V+CG +HTA + S +T+G G+ +LGHG S L P V L
Sbjct: 420 LRTISVSCGVWHTAAVVEVIMAQSNTSSGKLFTWGDGDKYRLGHGDRSSKLKPTCVPSLI 479
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGN 236
Y + +V CG T ++++G +++ G + LG N D P L+
Sbjct: 480 DYNFHKAV-CGHTLTIGLTTSGHIFTAGSSVYGQLG---------NPNNDGRYPRLVEEK 529
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G V+VACGA H ++T G ++++WG+G +G LG G D P V
Sbjct: 530 LGGG----GVVEVACGAYHVAVLTQSG-EVYTWGKGANGRLGHGDIADRKTPTFV 579
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 119/286 (41%), Gaps = 43/286 (15%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFT-------PSPVWDFHGHTVVKVACGSEHVVALV 73
G +++WG + +G S S T P P+ V VACG +H +
Sbjct: 218 GDVYVWGEVMCDTTCRQGSDSNAYSATAATDILVPKPLESNVMLDVSYVACGVKHAALVT 277
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
E + +WG +G+LG G S +P+++E+ S V + CG FHT
Sbjct: 278 RQAEVF--------TWGEECSGRLGHGAGTSIFQPRLVESL---SICNVETIACGEFHTC 326
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
+T D+ W G G LGHG+ S +P++V + + + +V CG +HT
Sbjct: 327 AIT---ATGDLY---TWGDGTHNAGLLGHGSNVSHWIPKRVSGPLEGLQVSAVSCGTWHT 380
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++++S+G ++++G + G+ + + + + K + V+CG
Sbjct: 381 ALITSSGKLYTFG-DGTFGVLGHGNRETISYPKEVESL----------KGLRTISVSCGV 429
Query: 254 AHTVLVTD--------DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT V + KL++WG G LG G P V
Sbjct: 430 WHTAAVVEVIMAQSNTSSGKLFTWGDGDKYRLGHGDRSSKLKPTCV 475
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G VV+VACG+ HV L +GE Y +WG NG+LG GD R P +E
Sbjct: 532 GGGVVEVACGAYHVAVLTQSGEVY--------TWGKGANGRLGHGDIADRKTPTFVEALR 583
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
S V + CGS TA + K + M +S C
Sbjct: 584 DRS---VKRIACGSGFTAAICQHKSVSGMEQSQC 614
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK------FQDPVQVAC 251
S GDV+ WG C S + + A + IL+ PK D VAC
Sbjct: 216 SFGDVYVWGEVMCDTTCRQGSDSNAYSATAATDILV-------PKPLESNVMLDVSYVAC 268
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G H LVT ++++WG SG LG G F P +V
Sbjct: 269 GVKHAALVTRQA-EVFTWGEECSGRLGHGAGTSIFQPRLV 307
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
V CG+ H ++V+ +V++WG E LG S+ + +++S +
Sbjct: 266 VACGVKHAALVTRQAEVFTWGEECSGRLGHGAGTSIFQPRLVESLSICNVE--------- 316
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTGKTIDFFAPAIVLWP 294
+ACG HT +T G L++WG G +G+LG G + + P V P
Sbjct: 317 ----TIACGEFHTCAITATG-DLYTWGDGTHNAGLLGHGSNVSHWIPKRVSGP 364
>gi|149043902|gb|EDL97353.1| rCG61079, isoform CRA_b [Rattus norvegicus]
Length = 1049
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIECQKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 130/297 (43%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLQGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG + + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIECQKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 103/252 (40%), Gaps = 68/252 (26%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL----------- 135
WG + GQLGLG D E L P+ + F V +V CG HT +
Sbjct: 4 WGNASYGQLGLGGIDEEIVLEPRKSDFFVNKK---VRDVGCGLRHTVFVLDDGTVYTCGC 60
Query: 136 ---------THRKRPNDML----------------------ESMCWTFGLGENGQLG-HG 163
RK+P ++ + + +GL +GQLG G
Sbjct: 61 NDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLQG 120
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASL 219
+ + VP +K L + +V V CG +H+ +S A +V+ WG K GLG+
Sbjct: 121 SEECIRVPRNIKSLSD-IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGI------ 173
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
E SP LI G F +QVA G AH+ ++T G ++ WGR + G LG
Sbjct: 174 ---ECQKQTSPQLIK--SLLGIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGL 224
Query: 280 GKTIDFFAPAIV 291
D + P ++
Sbjct: 225 NDENDRYVPNLL 236
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASYGQLGLGGIDEEIVLEPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|432906474|ref|XP_004077549.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Oryzias
latipes]
Length = 1059
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 109/243 (44%), Gaps = 42/243 (17%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
FHG V V CG H L+ ED Y+ G N+ GQ LG +SR +P+ +
Sbjct: 31 FHGKRVRDVGCGRRHTAFLL--------EDGTVYTCGCNDLGQ--LGHEKSRKKPEQVVA 80
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL-VPE 172
+ + ++CG HT L ND + W GLG +GQLG + + VP
Sbjct: 81 LDAQ---IIVALSCGESHTLAL------NDKGQVFSW--GLGSDGQLGLNNFEECIRVPR 129
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAI 228
+K L V + V CG +H+ +S G ++SWG + GLG+ G +I
Sbjct: 130 NIKSLSD-VQVAQVACGYWHSLALSKGGHIFSWGQNRYGQLGLGM----------TGQSI 178
Query: 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
S + G F Q+A G AH+ +T G ++ WGR + G LG T D P
Sbjct: 179 S-VPQHLQSLQGIPF---AQIAAGGAHSFALTLSG-AVFGWGRNKFGQLGLNDTNDRCFP 233
Query: 289 AIV 291
A++
Sbjct: 234 ALL 236
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 90/208 (43%), Gaps = 27/208 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV--SSFTPSPVWDFHGHTVV 60
Q+ V G SLA+ G ++ WG + + G + S P + G
Sbjct: 138 QVAQVACGYWHSLALSKGGHIFSWGQ----NRYGQLGLGMTGQSISVPQHLQSLQGIPFA 193
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++A G H AL +G + WG N GQLGL D R P +++
Sbjct: 194 QIAAGGAHSFALTLSG--------AVFGWGRNKFGQLGLNDTNDRCFPALLKALRSQR-- 243
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++CG HTA LT E +TFG G GQLGH +T + P +V EL
Sbjct: 244 -VIYISCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTNHEVNPRKVFELMGN 294
Query: 181 VYLVSVDCGLFHT-SVVSSAGDVWSWGM 207
V + + CG HT + S+G + S+G+
Sbjct: 295 V-VTQIACGRQHTLAFTPSSGKMDSFGL 321
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 132/300 (44%), Gaps = 50/300 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF-----TPSPVWDFHGHT 58
I ++ G +LA+++ G ++ WG ++G L ++F P +
Sbjct: 86 IVALSCGESHTLALNDKGQVFSWG------LGSDGQLGL-NNFEECIRVPRNIKSLSDVQ 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
V +VACG H +AL G + SWG N GQLGLG +S P+ +++ Q
Sbjct: 139 VAQVACGYWHSLALSKGGHIF--------SWGQNRYGQLGLGMTGQSISVPQHLQSL-QG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P+A ++ G H+ LT L + +G + GQLG T P +K L
Sbjct: 190 IPFA--QIAAGGAHSFALT--------LSGAVFGWGRNKFGQLGLNDTNDRCFPALLKAL 239
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ ++ + CG HT+ ++ G V+++G G G L N ++P +
Sbjct: 240 -RSQRVIYISCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTNHEVNPRKVFELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
GN Q+ACG HT+ T K+ S+G G +G LGT T + +PA V P
Sbjct: 293 GNVV--------TQIACGRQHTLAFTPSSGKMDSFGLGGNGQLGTRSTCNRKSPAPVKGP 344
>gi|357520081|ref|XP_003630329.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
gi|355524351|gb|AET04805.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
Length = 230
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 115/236 (48%), Gaps = 35/236 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN-QD 117
V+ ++ G+ H VAL++ ++VC SWG +GQLG GD + RL P + F+ QD
Sbjct: 14 VLLISAGASHTVALLTG-------NVVC-SWGRGEDGQLGHGDTDDRLLPTKLSAFDGQD 65
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ VTCG+ +T + K D+ CW G +NG+LG GTT+ + VP+++
Sbjct: 66 ----IVSVTCGADYT--VARSKSGKDVYSWGCW--GRNQNGELGLGTTKDSHVPQKILAF 117
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
+ + + V G H+ ++ GD+ W WG LGL + D + P ++
Sbjct: 118 -EGIRIKMVAAGAEHSVAITEDGDLYGWGWGRYGNLGL--------GDTNDRLIPEKVNI 168
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+G V V+CG HT+ ++ G L++ G + G LG G D P V
Sbjct: 169 DG------DKIVMVSCGWRHTISISSSG-GLYTHGWSKYGQLGHGDFEDCLVPRKV 217
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 19/165 (11%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYS-WGANNNGQLGLGDRES 104
P+ + F G +V V CG+++ VA + G+D+ + WG N NG+LGLG +
Sbjct: 53 LLPTKLSAFDGQDIVSVTCGADYTVA-----RSKSGKDVYSWGCWGRNQNGELGLGTTKD 107
Query: 105 RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
P+ I F + V G+ H+ +T + + +G G G LG G
Sbjct: 108 SHVPQKILAFEGIR---IKMVAAGAEHSVAITE--------DGDLYGWGWGRYGNLGLGD 156
Query: 165 TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
T L+PE+V + +VS CG HT +SS+G +++ G K
Sbjct: 157 TNDRLIPEKVNIDGDKIVMVS--CGWRHTISISSSGGLYTHGWSK 199
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 77/176 (43%), Gaps = 23/176 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGA-LWMWGNCPLPDSSTEGGFSLVS-SFTPSPVWDFHGHTVVK 61
I SV G ++A +G ++ WG C + + E G S P + F G +
Sbjct: 66 IVSVTCGADYTVARSKSGKDVYSWG-CWGRNQNGELGLGTTKDSHVPQKILAFEGIRIKM 124
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VA G+EH VA+ G+ Y WG G LGLGD RL P E N D
Sbjct: 125 VAAGAEHSVAITEDGD--------LYGWGWGRYGNLGLGDTNDRLIP---EKVNIDGD-K 172
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ V+CG HT ++ +T G + GQLGHG + LVP +V+ L
Sbjct: 173 IVMVSCGWRHTISISS--------SGGLYTHGWSKYGQLGHGDFEDCLVPRKVQAL 220
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P +V L+S G HT + + V SWG + + L + D + P +S
Sbjct: 11 PPHVLLISA--GASHTVALLTGNVVCSWGRGE------DGQLGHGDTDDRLLPTKLSAF- 61
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG---RGRSGVLGTGKTIDFFAPAIVL 292
QD V V CGA +TV + G ++SWG R ++G LG G T D P +L
Sbjct: 62 ----DGQDIVSVTCGADYTVARSKSGKDVYSWGCWGRNQNGELGLGTTKDSHVPQKIL 115
>gi|115373190|ref|ZP_01460491.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
gi|115369791|gb|EAU68725.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
Length = 859
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 124/294 (42%), Gaps = 43/294 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + +V+AG S+A+ G +W+WGN D G ++ S P V G V
Sbjct: 609 LSAMRAVEAGPAHSVAVHLNGTVWVWGNN---DFGQLGDGTVTSRAMPVQVSGLTG--VT 663
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H +AL D ++WG NN GQLG G + P +
Sbjct: 664 AVAVGVYHSLALR--------NDGTLWAWGYNNVGQLGNGTSGIQSTPAQVPGLT----- 710
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G+ H+ L + W +G GQLG GTT P QV P
Sbjct: 711 GVIALAAGNGHSLAL--------RTDGTVWGWGANSFGQLGDGTTTPRSTPTQV---PGL 759
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+++++ G F+T + S VW WG K G + ++T+ +P+ +SG
Sbjct: 760 TNVIALNAGAFYTVALRSERSVWEWG-SKSAGQLGDGTVTQK-----TTPVQVSG----- 808
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
D +A G AH + + D +W+WG + G +G G AP V +P
Sbjct: 809 --LTDVTALAAGNAHALALRTD-RTVWAWGGNQRGQIGDGTASIMPAPVNVSFP 859
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 112/288 (38%), Gaps = 38/288 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + +V A SLA+ + G +W WG+ G + TP V G V
Sbjct: 192 LTSVMAVAASEAHSLALRSDGTVWAWGDNGY---GQLGDGTKAQRTTPVQVLGLAG--VT 246
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G +SA D ++WG N+ GQLG G R P +
Sbjct: 247 ALAAGGNGTTVAISAHSLALRSDGTVWAWGDNSAGQLGDGTTTERATPVQVLGLT----- 301
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+V + G+FH+ L + W +G +GQLG GTT + P QV L
Sbjct: 302 SVTALAAGAFHSLALRD--------DGTVWAWGNNSSGQLGDGTTTARPTPVQVPGLTSV 353
Query: 181 VYLV------SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS 234
+ + S+ H+ + S G VW+WG TR +P+ +S
Sbjct: 354 IAVAAGGGDDSLGMRGDHSLALKSDGTVWAWGYNLSRQFGDGMPATRT------TPVQVS 407
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+ + G H V++ DG +W+WG SG LG G T
Sbjct: 408 -------ELTGGTALVAGDLHAVVLKSDG-TVWAWGDNSSGQLGEGVT 447
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 125/307 (40%), Gaps = 54/307 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ AG SLA+ + G +W WGN +SS + G ++ P+PV +V+
Sbjct: 300 LTSVTALAAGAFHSLALRDDGTVWAWGN----NSSGQLGDGTTTAR-PTPVQVPGLTSVI 354
Query: 61 KVACGS---------EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
VA G +H +AL S D ++WG N + Q G G +R P +
Sbjct: 355 AVAAGGGDDSLGMRGDHSLALKS--------DGTVWAWGYNLSRQFGDGMPATRTTPVQV 406
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
+ + G H +L + W +G +GQLG G T P
Sbjct: 407 SELTGGT-----ALVAGDLHAVVLKS--------DGTVWAWGDNSSGQLGEGVTPVRAKP 453
Query: 172 EQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPI 231
QV L L + D H+ V S G +W+WG + L + TR P+
Sbjct: 454 MQVSGLAAITALATGDG---HSVAVGSDGGIWAWGDNRRGQLGIGITATREI------PV 504
Query: 232 LISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+G +A G +H++ + +G +W+WG G LG G ID A V
Sbjct: 505 QATG-------LASISALAAGDSHSLALRGNG-SVWTWGSNAYGQLGDGTAIDRATAAQV 556
Query: 292 LWPPLTE 298
P LT+
Sbjct: 557 --PGLTD 561
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 105/283 (37%), Gaps = 55/283 (19%)
Query: 40 FSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL 99
F+L ++ P+P V+ +H +AL D ++WG N +GQLG
Sbjct: 136 FTLTANACPAP----------AVSAAGDHTLALR--------RDGTVWAWGFNGSGQLGN 177
Query: 100 GDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQ 159
G R P + +V V H+ L + W +G GQ
Sbjct: 178 GTATDRATPVQVPGLT-----SVMAVAASEAHSLALRS--------DGTVWAWGDNGYGQ 224
Query: 160 LGHGTTQSALVPEQVKELPQYVYLVSVDCGL-----FHTSVVSSAGDVWSWGMEKGLGLC 214
LG GT P QV L L + G H+ + S G VW+WG L
Sbjct: 225 LGDGTKAQRTTPVQVLGLAGVTALAAGGNGTTVAISAHSLALRSDGTVWAWGDNSAGQLG 284
Query: 215 PNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRS 274
+ R +P+ + G +A GA H++ + DDG +W+WG S
Sbjct: 285 DGTTTER------ATPVQVLG-------LTSVTALAAGAFHSLALRDDG-TVWAWGNNSS 330
Query: 275 GVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTK 317
G LG G T P V P LT + GG DD + +
Sbjct: 331 GQLGDGTTTARPTPVQV--PGLTSVIA---VAAGGGDDSLGMR 368
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 104/295 (35%), Gaps = 44/295 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V A G +LA+ G +W WG S G + TP V +V+ VA
Sbjct: 147 AVSAAGDHTLALRRDGTVWAWG---FNGSGQLGNGTATDRATPVQVPGL--TSVMAVAAS 201
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H +AL S D ++WG N GQLG G + R P + V +
Sbjct: 202 EAHSLALRS--------DGTVWAWGDNGYGQLGDGTKAQRTTPVQVLGLA-----GVTAL 248
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
G T + + W +G GQLG GTT P QV L L
Sbjct: 249 AAGGNGTTVAISAHSLALRSDGTVWAWGDNSAGQLGDGTTTERATPVQVLGLTSVTALA- 307
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
G FH+ + G VW+WG L + R +P+ + P
Sbjct: 308 --AGAFHSLALRDDGTVWAWGNNSSGQLGDGTTTARP------TPVQV-------PGLTS 352
Query: 246 PVQVACGAA---------HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ VA G H++ + DG +W+WG S G G P V
Sbjct: 353 VIAVAAGGGDDSLGMRGDHSLALKSDG-TVWAWGYNLSRQFGDGMPATRTTPVQV 406
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 117/287 (40%), Gaps = 43/287 (14%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
++ AG + ++ + + G +W WG+ +SS + G V+ P+ + +A
Sbjct: 413 TALVAGDLHAVVLKSDGTVWAWGD----NSSGQLGEG-VTPVRAKPMQVSGLAAITALAT 467
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G H VA+ G D ++WG N GQLG+G +R P ++
Sbjct: 468 GDGHSVAV--------GSDGGIWAWGDNRRGQLGIGITATREIPVQATGLA-----SISA 514
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
+ G H+ L R N + WT+G GQLG GT A+ ++P +
Sbjct: 515 LAAGDSHSLAL----RGNGSV----WTWGSNAYGQLGDGT---AIDRATAAQVPGLTDIT 563
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
++ G H+ + + G VW WG G + ++T + +P+ +SG
Sbjct: 564 ALAAGNHHSLALRNDGTVWVWGSND-FGQLGDGTVTSRK-----TPVQVSG-------LS 610
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V G AH+V V +G +W WG G LG G P V
Sbjct: 611 AMRAVEAGPAHSVAVHLNG-TVWVWGNNDFGQLGDGTVTSRAMPVQV 656
>gi|330837467|ref|YP_004412108.1| chromosome condensation regulator RCC1 [Sphaerochaeta coccoides DSM
17374]
gi|329749370|gb|AEC02726.1| regulator of chromosome condensation RCC1 [Sphaerochaeta coccoides
DSM 17374]
Length = 781
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 121/294 (41%), Gaps = 35/294 (11%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
M ++ SV AGG +L + G LW GN ++ S TP V V
Sbjct: 417 MVKVKSVSAGGFHTLILKMDGTLWATGNNEYGQLGVGTSGTVNSKSTPVQVM----TDVA 472
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V+ G H + L + G ++ G N GQLG+GD +R P + + D
Sbjct: 473 AVSAGWSHTMILKNDG--------TLWATGRNKVGQLGVGDNTNRSTPVQVSSMGSD--- 521
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V+ G +T ++ + W G GQLG GTT P QVK L
Sbjct: 522 -VAAVSTGESYTMIVKK--------DGTLWATGQNTAGQLGDGTTDDRNKPVQVKGLNGV 572
Query: 181 VYLVSVD---CGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++ V+ G FHT ++ G +W+ G LC + R +P+ + +
Sbjct: 573 GFMTDVEDVFAGGFHTMILKKNGTLWATGFNYFGQLCDGTTTIRT------TPVQVQDSS 626
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G D V+ G AHT+++ DG LW+ G+ G LG I+ PA V
Sbjct: 627 GVG-FMTDVATVSAGWAHTMILKKDG-TLWAIGKNEQGQLGVSDKINRSTPAQV 678
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 127/296 (42%), Gaps = 48/296 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
M+ + +V AG ++ + N G LW G + G + + S T V
Sbjct: 468 MTDVAAVSAGWSHTMILKNDGTLWATGRNKV------GQLGVGDNTNRS--------TPV 513
Query: 61 KVAC-GSEHVVALVSAGETYK---GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+V+ GS+ VA VS GE+Y +D ++ G N GQLG G + R +P ++ N
Sbjct: 514 QVSSMGSD--VAAVSTGESYTMIVKKDGTLWATGQNTAGQLGDGTTDDRNKPVQVKGLNG 571
Query: 117 DSPWA-VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V +V G FHT +L + N L W G GQL GTT P QV+
Sbjct: 572 VGFMTDVEDVFAGGFHTMIL----KKNGTL----WATGFNYFGQLCDGTTTIRTTPVQVQ 623
Query: 176 ELPQYVYLV---SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
+ ++ +V G HT ++ G +W+ G + L + + R+ +P
Sbjct: 624 DSSGVGFMTDVATVSAGWAHTMILKKDGTLWAIGKNEQGQLGVSDKINRS------TPAQ 677
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+S N V+ G ++T+++ DG LW+ G SG LG G D +P
Sbjct: 678 VSSN---------VASVSAGESYTMILKKDG-TLWATGSNDSGRLGVGDNNDRSSP 723
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 84/212 (39%), Gaps = 37/212 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNC---PLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
M+ + V AGG ++ + G LW G L D +T TP V D G
Sbjct: 575 MTDVEDVFAGGFHTMILKKNGTLWATGFNYFGQLCDGTT------TIRTTPVQVQDSSG- 627
Query: 58 TVVKVACGSEHVVALVSAGETYK---GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
G VA VSAG + +D ++ G N GQLG+ D+ +R P + +
Sbjct: 628 ------VGFMTDVATVSAGWAHTMILKKDGTLWAIGKNEQGQLGVSDKINRSTPAQVSS- 680
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
V V+ G +T +L + W G ++G+LG G P QV
Sbjct: 681 ------NVASVSAGESYTMILKK--------DGTLWATGSNDSGRLGVGDNNDRSSPMQV 726
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ V VS FHT ++ G +W+ G
Sbjct: 727 SSMGSDVAAVSAG---FHTMILKKNGTLWATG 755
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 77/180 (42%), Gaps = 37/180 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
M+ + +V AG ++ + G LW G + G ++ TP+ V
Sbjct: 631 MTDVATVSAGWAHTMILKKDGTLWAIGKN---EQGQLGVSDKINRSTPAQV--------- 678
Query: 61 KVACGSEHVVALVSAGETYK---GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VA VSAGE+Y +D ++ G+N++G+LG+GD R P + + D
Sbjct: 679 ------SSNVASVSAGESYTMILKKDGTLWATGSNDSGRLGVGDNNDRSSPMQVSSMGSD 732
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL---VPEQV 174
V V+ G FHT +L + N L W G GQLG G + S PEQV
Sbjct: 733 ----VAAVSAG-FHTMIL----KKNGTL----WATGYNFLGQLGLGDSGSGTDRSTPEQV 779
>gi|408681156|ref|YP_006880983.1| LPXTG-motif cell wall anchor domain [Streptomyces venezuelae ATCC
10712]
gi|328885485|emb|CCA58724.1| LPXTG-motif cell wall anchor domain [Streptomyces venezuelae ATCC
10712]
Length = 408
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 133/302 (44%), Gaps = 55/302 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ I V AGG +LA+D +G ++ WG+ L ++ T ++ P
Sbjct: 131 LTDIKDVAAGGKHALALDTSGQVYSWGDNSYGQLGNNRTGDSRTVPDRVQGMP------- 183
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V +++ G + +AL+ G+ Y+WG +GQLG G+R + P+ ++
Sbjct: 184 KVKQISAGCDFSLALLENGK--------VYAWGRGIHGQLGTGNRATSSVPRQVQGLEN- 234
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ E+ G +H LT +D ++S W + L GQLG+ +T+S+ +P V +
Sbjct: 235 ----IVEIDAGCYHALALT----ADDTVKS--WGYNL--YGQLGNSSTKSSTLPVDVDWI 282
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG-------MEKGLGLCPNASLTRNEAGDAISP 230
+ ++ G FH V +S VW WG +E N S T A P
Sbjct: 283 EG---VSDIEAGAFHNYVKTSDSHVWGWGNNQYGQLLESDEAFDANVSRTNRTA-----P 334
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ I P+ + +A GA H V VT D +++WG G LG G T+ +
Sbjct: 335 VEI-------PRLEGVQHLAAGARHGVAVTAD--DVFTWGHNGEGQLGNGTTVARYESVK 385
Query: 291 VL 292
+L
Sbjct: 386 IL 387
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 27/206 (13%)
Query: 88 SWGANNNGQLGLGDRESRLRPKIIET-FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
SWGA GQLG G L P + + F D V +++ G +A R + ++
Sbjct: 49 SWGAGRTGQLGNGTLSDSLSPSSVTSLFRGD----VDQMSAGGTSSADSFALARTDKTVK 104
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
S +G +GQLG+G + VP V P+ + V G H + ++G V+SWG
Sbjct: 105 S----WGHNSSGQLGNGGNTNQTVPTTV---PRLTDIKDVAAGGKHALALDTSGQVYSWG 157
Query: 207 MEKGLGLCPNASLTRNEAGDAIS-PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
L N GD+ + P + G PK + Q++ G ++ + ++G K
Sbjct: 158 DNS------YGQLGNNRTGDSRTVPDRVQGM----PKVK---QISAGCDFSLALLENG-K 203
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIV 291
+++WGRG G LGTG P V
Sbjct: 204 VYAWGRGIHGQLGTGNRATSSVPRQV 229
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 125/319 (39%), Gaps = 46/319 (14%)
Query: 38 GGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQL 97
G +L S +PS V V +++ G + T D SWG N++GQL
Sbjct: 59 GNGTLSDSLSPSSVTSLFRGDVDQMSAGGTSSADSFALART----DKTVKSWGHNSSGQL 114
Query: 98 GLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN 157
G G ++ P + + +V G H L +++G
Sbjct: 115 GNGGNTNQTVPTTVPRLTD-----IKDVAAGGKHALALD--------TSGQVYSWGDNSY 161
Query: 158 GQLGHGTT-QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLC 214
GQLG+ T S VP++V+ +P+ V +S C F +++ + G V++WG + LG
Sbjct: 162 GQLGNNRTGDSRTVPDRVQGMPK-VKQISAGCD-FSLALLEN-GKVYAWGRGIHGQLG-- 216
Query: 215 PNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT-DDGYKLWSWGRGR 273
T N A ++ P + G ++ V++ G H + +T DD K SWG
Sbjct: 217 -----TGNRATSSV-PRQVQG-------LENIVEIDAGCYHALALTADDTVK--SWGYNL 261
Query: 274 SGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLEGAEERDEKLSSAM 333
G LG T P V W + + G + +KT D + + +
Sbjct: 262 YGQLGNSSTKSSTLPVDVDWIEGVSDIE-----AGAFHNYVKTSDSHVWGWGNNQYGQLL 316
Query: 334 EEMKLLQSKLSVMERYASI 352
E + + +S R A +
Sbjct: 317 ESDEAFDANVSRTNRTAPV 335
>gi|395820632|ref|XP_003783667.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 [Otolemur
garnettii]
Length = 1049
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GLDCKKQTSPQLIKSLVGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGLDCKKQTSPQLIKSL-VGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 103/252 (40%), Gaps = 68/252 (26%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL----------- 135
WG + GQLGLG D E L P+ + F V +V CG HT +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFVLDDGTVYTCGC 60
Query: 136 ---------THRKRPNDML----------------------ESMCWTFGLGENGQLG-HG 163
RK+P ++ + + +GL +GQLG G
Sbjct: 61 NDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLLG 120
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASL 219
+ + VP +K L + +V V CG +H+ +S A +V+ WG K GLGL
Sbjct: 121 SEECIRVPRNIKSLSD-IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGL------ 173
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
+ SP LI G F +QVA G AH+ ++T G ++ WGR + G LG
Sbjct: 174 ---DCKKQTSPQLIK--SLVGIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGL 224
Query: 280 GKTIDFFAPAIV 291
D + P ++
Sbjct: 225 NDENDRYVPNLL 236
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWG---RGRSGVLGTGKTI 283
++WG G+ G+LG+ + I
Sbjct: 106 YAWGLDSDGQLGLLGSEECI 125
>gi|291408963|ref|XP_002720777.1| PREDICTED: regulator of chromosome condensation (RCC1) and BTB
(POZ) domain containing protein 1 [Oryctolagus
cuniculus]
Length = 531
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P I+ V EV CGS H+ +L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGIAP--IQVCTNLLIKQVVEVACGSHHSMVLA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V G+
Sbjct: 145 ---ADGEVYAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V++WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYAWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA V+
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLSPAHVM 280
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 125/321 (38%), Gaps = 52/321 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + VV+VACGS H + L + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLI-----KQVVEVACGSHHSMVLAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
Y+WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 V--------YAWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKRVVGIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDNGEVYAW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTV 257
G +++WG T + G L+S K + AC +AHT
Sbjct: 250 DEGLLYAWGAN-----------TYGQLGTGNKNNLLSPAHVMVEKERVVEIAACHSAHTS 298
Query: 258 LVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNTG 308
G ++ WG RG+S +L T FA V W L+ E +D L
Sbjct: 299 AAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACFATPAVSWRLLSVE-HEDFLTVA 357
Query: 309 GLDDEIKTKDLEGAEERDEKL 329
E K+ + E D K
Sbjct: 358 ----ESLRKEFDSPETADLKF 374
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSNCLGTGDNQSTLVPKKLEALCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+PI + N + V+VACG+ H++++ DG ++++
Sbjct: 103 G------YSQLGNGTTNQGIAPIQVCTN----LLIKQVVEVACGSHHSMVLAADG-EVYA 151
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 152 WGYNNCGQVGSGSTANQPTP 171
>gi|357520079|ref|XP_003630328.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
gi|355524350|gb|AET04804.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
Length = 316
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 101/210 (48%), Gaps = 26/210 (12%)
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRP 141
++VC SWG +GQLG GD + RL P + F+ QD + VTCG+ +T + K
Sbjct: 68 NVVC-SWGRGEDGQLGHGDTDDRLLPTKLSAFDGQD----IVSVTCGADYT--VARSKSG 120
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
D+ +++G G+ G+LGHG +P ++ L Q + + + CG H V+
Sbjct: 121 KDV-----YSWGWGDFGRLGHGDPSDLFIPHPIRAL-QGLRIKQISCGDCHCLAVTMENK 174
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V SWG + N L D+ P I G + + VA GA H+V +T+
Sbjct: 175 VLSWGRNQ------NGELGLGTTKDSHVPQKILAF--EGIRIK---MVAAGAEHSVAITE 223
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
DG L+ WG GR G LG G T D P V
Sbjct: 224 DG-DLYGWGWGRYGNLGLGDTNDRLIPEKV 252
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 113/248 (45%), Gaps = 36/248 (14%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P+ + F G +V V CG+++ VA + G+D+ YSWG + G+LG GD
Sbjct: 90 LLPTKLSAFDGQDIVSVTCGADYTVA-----RSKSGKDV--YSWGWGDFGRLGHGDPSDL 142
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
P I + +++CG H +T +E+ ++G +NG+LG GTT
Sbjct: 143 FIPHPIRALQG---LRIKQISCGDCHCLAVT--------MENKVLSWGRNQNGELGLGTT 191
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNE 223
+ + VP+++ + + + V G H+ ++ GD+ W WG LGL +
Sbjct: 192 KDSHVPQKILAF-EGIRIKMVAAGAEHSVAITEDGDLYGWGWGRYGNLGL--------GD 242
Query: 224 AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
D + P ++ +G V V+CG HT+ ++ G L++ G + G LG G
Sbjct: 243 TNDRLIPEKVNIDG------DKIVMVSCGWRHTISISSSG-GLYTHGWSKYGQLGHGDFE 295
Query: 284 DFFAPAIV 291
D P V
Sbjct: 296 DCLVPRKV 303
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 88/209 (42%), Gaps = 29/209 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGA---LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I SV G ++A +G W WG D G F P P+ G +
Sbjct: 103 IVSVTCGADYTVARSKSGKDVYSWGWG-----DFGRLGHGDPSDLFIPHPIRALQGLRIK 157
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+++CG H +A+ + SWG N NG+LGLG + P+ I F
Sbjct: 158 QISCGDCHCLAVTMENKVL--------SWGRNQNGELGLGTTKDSHVPQKILAFEGIR-- 207
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ V G+ H+ +T + + +G G G LG G T L+PE+V
Sbjct: 208 -IKMVAAGAEHSVAITE--------DGDLYGWGWGRYGNLGLGDTNDRLIPEKVNIDGDK 258
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+ +VS CG HT +SS+G +++ G K
Sbjct: 259 IVMVS--CGWRHTISISSSGGLYTHGWSK 285
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 73/176 (41%), Gaps = 25/176 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS-SFTPSPVWDFHGHTVVK 61
+I + G LA+ + WG + + E G S P + F G +
Sbjct: 155 RIKQISCGDCHCLAVTMENKVLSWGR----NQNGELGLGTTKDSHVPQKILAFEGIRIKM 210
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VA G+EH VA+ G+ Y WG G LGLGD RL P E N D
Sbjct: 211 VAAGAEHSVAITEDGDLY--------GWGWGRYGNLGLGDTNDRLIP---EKVNIDGD-K 258
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ V+CG HT ++ +T G + GQLGHG + LVP +V+ L
Sbjct: 259 IVMVSCGWRHTISISS--------SGGLYTHGWSKYGQLGHGDFEDCLVPRKVQAL 306
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 70/143 (48%), Gaps = 14/143 (9%)
Query: 151 TFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAG-DVWSWGMEK 209
++G GE+GQLGHG T L+P ++ +VSV CG +T S +G DV+SWG
Sbjct: 72 SWGRGEDGQLGHGDTDDRLLPTKLSAFDGQ-DIVSVTCGADYTVARSKSGKDVYSWGWGD 130
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
L + D P I G + + Q++CG H + VT + K+ SW
Sbjct: 131 ------FGRLGHGDPSDLFIPHPI--RALQGLRIK---QISCGDCHCLAVTMEN-KVLSW 178
Query: 270 GRGRSGVLGTGKTIDFFAPAIVL 292
GR ++G LG G T D P +L
Sbjct: 179 GRNQNGELGLGTTKDSHVPQKIL 201
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 72/181 (39%), Gaps = 39/181 (21%)
Query: 110 IIETFNQDSPWAVYEVTCGSFHT-ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA 168
+I + SP V ++ G+ HT ALL+ + ++ML +
Sbjct: 2 MIMSEKSASPPHVLLISAGASHTVALLSKQFESSEMLARF---------------LISTP 46
Query: 169 LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV-WSWGMEKGLGLCPNASLTRNEAGDA 227
L+PE + C + S V+ G+V SWG + + L + D
Sbjct: 47 LLPESWRL-----------CSKVNASAVNFPGNVVCSWGRGE------DGQLGHGDTDDR 89
Query: 228 ISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
+ P +S QD V V CGA +TV + G ++SWG G G LG G D F
Sbjct: 90 LLPTKLSAF-----DGQDIVSVTCGADYTVARSKSGKDVYSWGWGDFGRLGHGDPSDLFI 144
Query: 288 P 288
P
Sbjct: 145 P 145
>gi|310817521|ref|YP_003949879.1| regulator of chromosome condensation, rcc1 [Stigmatella aurantiaca
DW4/3-1]
gi|309390593|gb|ADO68052.1| Regulator of chromosome condensation, RCC1 [Stigmatella aurantiaca
DW4/3-1]
Length = 860
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 124/294 (42%), Gaps = 43/294 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + +V+AG S+A+ G +W+WGN D G ++ S P V G V
Sbjct: 610 LSAMRAVEAGPAHSVAVHLNGTVWVWGNN---DFGQLGDGTVTSRAMPVQVSGLTG--VT 664
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H +AL D ++WG NN GQLG G + P +
Sbjct: 665 AVAVGVYHSLALR--------NDGTLWAWGYNNVGQLGNGTSGIQSTPAQVPGLT----- 711
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G+ H+ L + W +G GQLG GTT P QV P
Sbjct: 712 GVIALAAGNGHSLAL--------RTDGTVWGWGANSFGQLGDGTTTPRSTPTQV---PGL 760
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+++++ G F+T + S VW WG K G + ++T+ +P+ +SG
Sbjct: 761 TNVIALNAGAFYTVALRSERSVWEWG-SKSAGQLGDGTVTQKT-----TPVQVSG----- 809
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
D +A G AH + + D +W+WG + G +G G AP V +P
Sbjct: 810 --LTDVTALAAGNAHALALRTD-RTVWAWGGNQRGQIGDGTASIMPAPVNVSFP 860
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 122/324 (37%), Gaps = 60/324 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + +V A SLA+ + G +W WG+ G + TP V G V
Sbjct: 193 LTSVMAVAASEAHSLALRSDGTVWAWGDNGY---GQLGDGTKAQRTTPVQVLGLAG--VT 247
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G +SA D ++WG N+ GQLG G R P +
Sbjct: 248 ALAAGGNGTTVAISAHSLALRSDGTVWAWGDNSAGQLGDGTTTERATPVQVLGLT----- 302
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+V + G+FH+ L + W +G +GQLG GTT + P QV L
Sbjct: 303 SVTALAAGAFHSLALRD--------DGTVWAWGNNSSGQLGDGTTTARPTPVQVPGLTSV 354
Query: 181 VYLV------SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE----------- 223
+ + S+ H+ + S G VW+WG TR
Sbjct: 355 IAVAAGGGDDSLGMRGDHSLALKSDGTVWAWGYNLSRQFGDGMPATRTTPVQVSELTGGT 414
Query: 224 ---AGDAISPILIS-------GNGPHG-------PKFQDPVQVACGAAHTVLVTDDGYK- 265
AGD + +L S G+ G P P+QV+ AA T L T DG+
Sbjct: 415 ALVAGDLHAVVLKSDGTVWAWGDNSSGQLGEGVTPVRAKPMQVSGLAAITALATGDGHSV 474
Query: 266 -------LWSWGRGRSGVLGTGKT 282
+W+WG R G LG G T
Sbjct: 475 AVGSDGGIWAWGDNRRGQLGIGIT 498
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 125/307 (40%), Gaps = 54/307 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ AG SLA+ + G +W WGN +SS + G ++ P+PV +V+
Sbjct: 301 LTSVTALAAGAFHSLALRDDGTVWAWGN----NSSGQLGDGTTTAR-PTPVQVPGLTSVI 355
Query: 61 KVACGS---------EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
VA G +H +AL S D ++WG N + Q G G +R P +
Sbjct: 356 AVAAGGGDDSLGMRGDHSLALKS--------DGTVWAWGYNLSRQFGDGMPATRTTPVQV 407
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
+ + G H +L + W +G +GQLG G T P
Sbjct: 408 SELTGGT-----ALVAGDLHAVVLKS--------DGTVWAWGDNSSGQLGEGVTPVRAKP 454
Query: 172 EQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPI 231
QV L L + D H+ V S G +W+WG + L + TR P+
Sbjct: 455 MQVSGLAAITALATGDG---HSVAVGSDGGIWAWGDNRRGQLGIGITATREI------PV 505
Query: 232 LISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+G +A G +H++ + +G +W+WG G LG G ID A V
Sbjct: 506 QATG-------LASISALAAGDSHSLALRGNG-SVWTWGSNAYGQLGDGTAIDRATAAQV 557
Query: 292 LWPPLTE 298
P LT+
Sbjct: 558 --PGLTD 562
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 105/283 (37%), Gaps = 55/283 (19%)
Query: 40 FSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL 99
F+L ++ P+P V+ +H +AL D ++WG N +GQLG
Sbjct: 137 FTLTANACPAP----------AVSAAGDHTLALR--------RDGTVWAWGFNGSGQLGN 178
Query: 100 GDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQ 159
G R P + +V V H+ L + W +G GQ
Sbjct: 179 GTATDRATPVQVPGLT-----SVMAVAASEAHSLALRS--------DGTVWAWGDNGYGQ 225
Query: 160 LGHGTTQSALVPEQVKELPQYVYLVSVDCGLF-----HTSVVSSAGDVWSWGMEKGLGLC 214
LG GT P QV L L + G H+ + S G VW+WG L
Sbjct: 226 LGDGTKAQRTTPVQVLGLAGVTALAAGGNGTTVAISAHSLALRSDGTVWAWGDNSAGQLG 285
Query: 215 PNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRS 274
+ R +P+ + G +A GA H++ + DDG +W+WG S
Sbjct: 286 DGTTTER------ATPVQVLG-------LTSVTALAAGAFHSLALRDDG-TVWAWGNNSS 331
Query: 275 GVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTK 317
G LG G T P V P LT + GG DD + +
Sbjct: 332 GQLGDGTTTARPTPVQV--PGLTSVIA---VAAGGGDDSLGMR 369
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 104/295 (35%), Gaps = 44/295 (14%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V A G +LA+ G +W WG S G + TP V +V+ VA
Sbjct: 148 AVSAAGDHTLALRRDGTVWAWG---FNGSGQLGNGTATDRATPVQVPGL--TSVMAVAAS 202
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H +AL S D ++WG N GQLG G + R P + V +
Sbjct: 203 EAHSLALRS--------DGTVWAWGDNGYGQLGDGTKAQRTTPVQVLGLA-----GVTAL 249
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
G T + + W +G GQLG GTT P QV L L
Sbjct: 250 AAGGNGTTVAISAHSLALRSDGTVWAWGDNSAGQLGDGTTTERATPVQVLGLTSVTALA- 308
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
G FH+ + G VW+WG L + R +P+ + P
Sbjct: 309 --AGAFHSLALRDDGTVWAWGNNSSGQLGDGTTTARP------TPVQV-------PGLTS 353
Query: 246 PVQVACGAA---------HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ VA G H++ + DG +W+WG S G G P V
Sbjct: 354 VIAVAAGGGDDSLGMRGDHSLALKSDG-TVWAWGYNLSRQFGDGMPATRTTPVQV 407
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 117/287 (40%), Gaps = 43/287 (14%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
++ AG + ++ + + G +W WG+ +SS + G V+ P+ + +A
Sbjct: 414 TALVAGDLHAVVLKSDGTVWAWGD----NSSGQLGEG-VTPVRAKPMQVSGLAAITALAT 468
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G H VA+ G D ++WG N GQLG+G +R P ++
Sbjct: 469 GDGHSVAV--------GSDGGIWAWGDNRRGQLGIGITATREIPVQATGLA-----SISA 515
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
+ G H+ L R N + WT+G GQLG GT A+ ++P +
Sbjct: 516 LAAGDSHSLAL----RGNGSV----WTWGSNAYGQLGDGT---AIDRATAAQVPGLTDIT 564
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
++ G H+ + + G VW WG G + ++T + +P+ +SG
Sbjct: 565 ALAAGNHHSLALRNDGTVWVWGSND-FGQLGDGTVTSRK-----TPVQVSG-------LS 611
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V G AH+V V +G +W WG G LG G P V
Sbjct: 612 AMRAVEAGPAHSVAVHLNG-TVWVWGNNDFGQLGDGTVTSRAMPVQV 657
>gi|444725178|gb|ELW65756.1| putative E3 ubiquitin-protein ligase HERC4 [Tupaia chinensis]
Length = 870
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 12 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCKKQTSPQLIKSLLGIPFMQV 69
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 70 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 119
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 120 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 169
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 170 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 218
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 108/238 (45%), Gaps = 40/238 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 13 IVQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCKKQTSPQLIKSL-LG 63
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 64 IPFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL 113
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 114 -RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV---- 162
Query: 238 PHGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 163 -----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 215
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 19/115 (16%)
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGN 236
+ +V V CG +H+ +S A +V+ WG K GLG+ + SP LI
Sbjct: 11 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGI---------DCKKQTSPQLIK-- 59
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G F +QVA G AH+ ++T G ++ WGR + G LG D + P ++
Sbjct: 60 SLLGIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGLNDENDRYVPNLL 110
>gi|260802292|ref|XP_002596026.1| hypothetical protein BRAFLDRAFT_113678 [Branchiostoma floridae]
gi|229281280|gb|EEN52038.1| hypothetical protein BRAFLDRAFT_113678 [Branchiostoma floridae]
Length = 1015
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 124/286 (43%), Gaps = 40/286 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF-SLVSSFTPSPVWDFHGHTVVK 61
QI V GG SLA+ N G ++ WGN +S + G S + P + G +
Sbjct: 140 QIVQVACGGKHSLALSNDGRIFSWGN----NSHGQLGIGSTKNQPKPQELTSLTGIPFCQ 195
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ G H L +G + +G N GQLGLGD R P +++
Sbjct: 196 IVAGGSHSFVLSKSG--------AVFGFGRNTFGQLGLGDTGDRKYPTHVKSLRS---LK 244
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V ++CG HTA+LT L+ TFG G GQLGH + +P +V EL +
Sbjct: 245 VTHISCGEEHTAVLT--------LDGGVLTFGAGSYGQLGHNSNNHEALPRKVFEL-MGL 295
Query: 182 YLVSVDCGLFHT-SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ + CG HT + V S+G ++S+ GL N L + +PI + +GP
Sbjct: 296 EVTQLACGRMHTMAYVESSGRIYSF------GLGGNGQLGSKGTTNCNTPITV--DGPFV 347
Query: 241 PKFQD-PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
P D ++ C +T G + ++ S + GT K +DF
Sbjct: 348 PFAGDNSLEEQCYVVQA--ITAGGDQAFALA---SKLQGTPKPLDF 388
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 95/214 (44%), Gaps = 57/214 (26%)
Query: 87 YSWGANNNGQLGLG--DRESRLRPKIIETFNQDSPW----AVYEVTCGSFHTALLTHRKR 140
+ WGA NG+LGLG + + L PK + P+ A+ EV+CG HT +
Sbjct: 2 FCWGAARNGELGLGGIEEDVILAPK-------EQPFGATKAMREVSCGRQHTVFV----- 49
Query: 141 PNDMLESMCWTFGLGENGQLGHG------TTQSALVPEQVKELPQYVYLVSVDCGLFHTS 194
+ E +T G + GQLG T +AL + +++ V CG +H
Sbjct: 50 ---LAEGTVYTCGSNDYGQLGQDKGHKRPTVITALDTQSIQQ---------VSCGDYHNL 97
Query: 195 VVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP------VQ 248
VV+ V+SWG + C T EAG GN P+ VQ
Sbjct: 98 VVNDKYQVFSWGYDD----CGQLGHTL-EAG---------GNNSRRPRMVKELSSLQIVQ 143
Query: 249 VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
VACG H++ +++DG +++SWG G LG G T
Sbjct: 144 VACGGKHSLALSNDG-RIFSWGNNSHGQLGIGST 176
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 41/236 (17%)
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+V+CG +H V +++ G Y+ G+N+ GQ LG + RP +I + S
Sbjct: 38 EVSCGRQHTVFVLAEG--------TVYTCGSNDYGQ--LGQDKGHKRPTVITALDTQS-- 85
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT---QSALVPEQVKEL 177
+ +V+CG +H ++ ND + W G + GQLGH ++ P VKEL
Sbjct: 86 -IQQVSCGDYHNLVV------NDKYQVFSW--GYDDCGQLGHTLEAGGNNSRRPRMVKEL 136
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISG 235
+ +V V CG H+ +S+ G ++SWG LG+ + + + +++ I
Sbjct: 137 SS-LQIVQVACGGKHSLALSNDGRIFSWGNNSHGQLGIGSTKNQPKPQELTSLTGIPF-- 193
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
Q+ G +H+ +++ G ++ +GR G LG G T D P V
Sbjct: 194 -----------CQIVAGGSHSFVLSKSG-AVFGFGRNTFGQLGLGDTGDRKYPTHV 237
>gi|58865718|ref|NP_001012074.1| probable E3 ubiquitin-protein ligase HERC4 [Rattus norvegicus]
gi|81883244|sp|Q5PQN1.1|HERC4_RAT RecName: Full=Probable E3 ubiquitin-protein ligase HERC4; AltName:
Full=HECT domain and RCC1-like domain-containing protein
4
gi|56269464|gb|AAH87104.1| Hect domain and RLD 4 [Rattus norvegicus]
Length = 1057
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIECQKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 130/297 (43%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLQGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG + + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIECQKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 103/252 (40%), Gaps = 68/252 (26%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL----------- 135
WG + GQLGLG D E L P+ + F V +V CG HT +
Sbjct: 4 WGNASYGQLGLGGIDEEIVLEPRKSDFFVNKK---VRDVGCGLRHTVFVLDDGTVYTCGC 60
Query: 136 ---------THRKRPNDML----------------------ESMCWTFGLGENGQLG-HG 163
RK+P ++ + + +GL +GQLG G
Sbjct: 61 NDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLQG 120
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASL 219
+ + VP +K L + +V V CG +H+ +S A +V+ WG K GLG+
Sbjct: 121 SEECIRVPRNIKSLSD-IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGI------ 173
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
E SP LI G F +QVA G AH+ ++T G ++ WGR + G LG
Sbjct: 174 ---ECQKQTSPQLIK--SLLGIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGL 224
Query: 280 GKTIDFFAPAIV 291
D + P ++
Sbjct: 225 NDENDRYVPNLL 236
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASYGQLGLGGIDEEIVLEPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|118351057|ref|XP_001008807.1| Kinesin motor domain containing protein [Tetrahymena thermophila]
gi|89290574|gb|EAR88562.1| Kinesin motor domain containing protein [Tetrahymena thermophila
SB210]
Length = 1264
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 138/328 (42%), Gaps = 55/328 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
Q C V G S I N G + WG + G S + P+PV F ++V V
Sbjct: 891 QACQVSLGYHHSACISNQGQILTWGR---GNRGQLGHSSFENCLLPTPVNFFSKMSIVSV 947
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
CG +H +AL + G + SWG +GQLGLGD +S+ P+ I + + V
Sbjct: 948 GCGWQHTLALSNDGRVF--------SWGFGEDGQLGLGDYQSQNSPQFINSL---EGYFV 996
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP--EQVKELPQY 180
++ G H++++T E + FG + +L + T Q+ +P +++ L Q
Sbjct: 997 TQINAGHSHSSVITS--------EGIFMMFGCNIDHRLMNKTNQNQFLPCITELEFLRQE 1048
Query: 181 ----VYLVSVDCGLFHTSVVSSAGDVWSWGM--EKGLGL-----CPNASLTRNEAGD--- 226
V G+ H++V++ G++++ G+ E LG PN+ + + + +
Sbjct: 1049 YGSDYNAVKASLGVNHSAVITKNGNLYTSGLGNEGQLGSFISEDTPNSLMIQKNSNEMSE 1108
Query: 227 -------------AISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGR 273
I K +QV+CG + T LV ++ +++S+G+G
Sbjct: 1109 YSKFEEEQQENQDQFDRICYFNKVNFFNKKNKAIQVSCGDSFT-LVINEQSQVYSFGKGS 1167
Query: 274 SGVLGTGKTIDFFAPAIVLWPPLTEEFK 301
LG +D V P L E K
Sbjct: 1168 YYRLG---HLDIQTNQNVYEPKLIESLK 1192
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 43/227 (18%)
Query: 85 VCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDM 144
+ Y WG +G+LG+ + P+II +V+ G H+A +++
Sbjct: 861 IIYIWGNGKDGRLGIEGEKPFKFPQIIPNI------QACQVSLGYHHSACISN------- 907
Query: 145 LESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+ T+G G GQLGH + ++ L+P V + + +VSV CG HT +S+ G V+S
Sbjct: 908 -QGQILTWGRGNRGQLGHSSFENCLLPTPVNFFSK-MSIVSVGCGWQHTLALSNDGRVFS 965
Query: 205 WGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV------QVACGAAHT 256
WG E G LGL GD S + P+F + + Q+ G +H+
Sbjct: 966 WGFGEDGQLGL-----------GDYQS--------QNSPQFINSLEGYFVTQINAGHSHS 1006
Query: 257 VLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQD 303
++T +G +G L + F P I L +E+ D
Sbjct: 1007 SVITSEGI-FMMFGCNIDHRLMNKTNQNQFLPCITELEFLRQEYGSD 1052
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
+ P + + V+ G H VA+ + G+ Y +WG N QLGLGD E
Sbjct: 1183 YEPKLIESLKNFKITSVSTGCRHAVAITNDGKVY--------TWGFNFYDQLGLGDSEKD 1234
Query: 106 L-RPKIIETFNQDSPWAVYEVTCGSFHTALL 135
+P + S V + +CG FHT++L
Sbjct: 1235 YQQPTKVTKL---SGLNVKQSSCGYFHTSVL 1262
>gi|118396198|ref|XP_001030441.1| Regulator of chromosome condensation (RCC1) [Tetrahymena thermophila]
gi|89284744|gb|EAR82778.1| Regulator of chromosome condensation (RCC1) [Tetrahymena thermophila
SB210]
Length = 1984
Score = 85.9 bits (211), Expect = 4e-14, Method: Composition-based stats.
Identities = 75/260 (28%), Positives = 120/260 (46%), Gaps = 39/260 (15%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V VACG +H VA+ AG +WG N++ QLGLG++ P F
Sbjct: 1544 VTSVACGYQHSVAITYAG--------TVLAWGDNSHSQLGLGEKSPSSVP-----FPTPI 1590
Query: 119 P--WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
P + V+CGS HT L + + +++G GE G LGHG P+ ++
Sbjct: 1591 PALTNIQSVSCGSEHTLALDYIGQ--------VFSWGNGEGGLLGHGNEDVCPSPKIIEA 1642
Query: 177 LPQYVYLVSVD---CGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
L ++VD CG H+ V++ V+SWG +G L + L NE +P +
Sbjct: 1643 LKG----LNVDFIVCGGLHSLVLTKNRQVYSWGRNEGGQLGIDKKLFTNEKCYLTTPKRV 1698
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
GN + +Q+A G AH++ + +G +++ WG +G +G G D + V
Sbjct: 1699 KGN----LEGVGVIQIAAGEAHSLALALNG-QVYGWGYNMNGQIGLGMQTDTYP---VYE 1750
Query: 294 PPLTEEF-KQDELNTGGLDD 312
P L + K +++ GL+D
Sbjct: 1751 PQLIPKLNKIEKIFCCGLND 1770
Score = 61.6 bits (148), Expect = 7e-07, Method: Composition-based stats.
Identities = 60/214 (28%), Positives = 90/214 (42%), Gaps = 45/214 (21%)
Query: 85 VCYSWGANNNGQLG--LGDRESRLRPKIIETFNQ------DSPWAVYEVTCGSFHTALLT 136
V +SWG N GQ+G +++ L KI F + D+ V V CG H+ +T
Sbjct: 1501 VMFSWGQNTEGQMGNVYDPKQNLLSKKIKVNFPKLIVPLKDT--IVTSVACGYQHSVAIT 1558
Query: 137 HRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
+ + W G + QLG G + VP +P + SV CG HT +
Sbjct: 1559 YAG------TVLAW--GDNSHSQLGLGEKSPSSVPFPTP-IPALTNIQSVSCGSEHTLAL 1609
Query: 197 SSAGDVWSWGMEKG--LG-----LCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV 249
G V+SWG +G LG +CP SP +I F +
Sbjct: 1610 DYIGQVFSWGNGEGGLLGHGNEDVCP-------------SPKIIEALKGLNVDF-----I 1651
Query: 250 ACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
CG H++++T + +++SWGR G LG K +
Sbjct: 1652 VCGGLHSLVLTKN-RQVYSWGRNEGGQLGIDKKL 1684
Score = 55.8 bits (133), Expect = 4e-05, Method: Composition-based stats.
Identities = 82/309 (26%), Positives = 121/309 (39%), Gaps = 69/309 (22%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF--SLVSSFTPSP--VWDFHG 56
++ I SV G +LA+D G ++ WGN EGG PSP + G
Sbjct: 1593 LTNIQSVSCGSEHTLALDYIGQVFSWGN-------GEGGLLGHGNEDVCPSPKIIEALKG 1645
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
V + CG H + L + YSWG N GQLG+ D++ K T +
Sbjct: 1646 LNVDFIVCGGLHSLVLTKNRQV--------YSWGRNEGGQLGI-DKKLFTNEKCYLTTPK 1696
Query: 117 D-----SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT---TQSA 168
V ++ G H+ L L + +G NGQ+G G T
Sbjct: 1697 RVKGNLEGVGVIQIAAGEAHSLALA--------LNGQVYGWGYNMNGQIGLGMQTDTYPV 1748
Query: 169 LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK---GLGLCPNASLTRNEAG 225
P+ + +L + + CGL D G+EK + N L + +
Sbjct: 1749 YEPQLIPKLNKIEKIFC--CGL---------NDSNQLGLEKEPIKITSTTNNILDQYKPQ 1797
Query: 226 D---AISPILISGNGPHGPKFQD-----PV-QVACGAAHTV-LVTDDG--YKLWSWGRGR 273
D A++ + I PK D PV V+CG H++ LV D Y L++WG +
Sbjct: 1798 DQKRAVTDVFI-------PKKMDCFHQIPVLHVSCGHNHSLALVVADTKHYMLFAWGMHK 1850
Query: 274 SGVLGTGKT 282
G LG G+T
Sbjct: 1851 HGQLGIGET 1859
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ES 104
F P + FH V+ V+CG H +ALV A + + ++WG + +GQLG+G+ ++
Sbjct: 1807 FIPKKMDCFHQIPVLHVSCGHNHSLALVVADTKH----YMLFAWGMHKHGQLGIGETGQN 1862
Query: 105 RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
P+ I T+ QD Y + CGS+H+ ++ +
Sbjct: 1863 SSVPRPI-TYLQDV--TTYSMACGSYHSLVVAN 1892
Score = 45.4 bits (106), Expect = 0.053, Method: Composition-based stats.
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 33/181 (18%)
Query: 152 FGLGEN--GQLGH-GTTQSALVPEQVK-ELPQYVY------LVSVDCGLFHTSVVSSAGD 201
F G+N GQ+G+ + L+ +++K P+ + + SV CG H+ ++ AG
Sbjct: 1503 FSWGQNTEGQMGNVYDPKQNLLSKKIKVNFPKLIVPLKDTIVTSVACGYQHSVAITYAGT 1562
Query: 202 VWSWG----MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTV 257
V +WG + GLG +S+ +PI P + V+CG+ HT+
Sbjct: 1563 VLAWGDNSHSQLGLGEKSPSSVPFP------TPI---------PALTNIQSVSCGSEHTL 1607
Query: 258 LVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTK 317
+ G +++SWG G G+LG G +P I+ + D + GGL + TK
Sbjct: 1608 ALDYIG-QVFSWGNGEGGLLGHGNEDVCPSPKII---EALKGLNVDFIVCGGLHSLVLTK 1663
Query: 318 D 318
+
Sbjct: 1664 N 1664
>gi|297815950|ref|XP_002875858.1| regulator of chromosome condensation family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297321696|gb|EFH52117.1| regulator of chromosome condensation family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 962
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 141/335 (42%), Gaps = 75/335 (22%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL---VSSFTPSP--VWDFHGHTVV 60
S+ G ++ + G L+ WG E G L V S+ P P + +F G TV
Sbjct: 308 SISCGTNYAVLVTKQGQLYSWGE--------ESGGRLGHGVCSYVPHPKLIDEFDGSTVE 359
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
CG H A+ ++G+ Y D G +N G LGLG S +P + Q
Sbjct: 360 LADCGEFHTCAVTTSGDLYAWGD------GDHNAGLLGLGSGASHWKP--VRILGQMEGI 411
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++CG +HTA +T + +TFG G G LGHG S +P +V+ L
Sbjct: 412 NVRTISCGPWHTAFVTSAGK--------LFTFGDGTFGALGHGDRISTNIPREVEAL-NG 462
Query: 181 VYLVSVDCGLFHTSVV-------SSAGDVWSW--GMEKGLG-------LCP-------NA 217
+ CG++H++ V SS+G +++W G + LG L P
Sbjct: 463 CRTIRTACGVWHSAAVVSVFGEASSSGKLFTWGDGDDGKLGHGDIASRLIPLSVTELDTT 522
Query: 218 SLTRNEAGDAISPIL-ISGN----GPHGPKFQDPV----------------QVACGAAHT 256
S + G +I+ L +SG G P D V +VACG H
Sbjct: 523 SFQQVACGQSITVALSMSGQVYAMGTADPSQDDVVRAPSCIEGGLGKSFVQEVACGYHH- 581
Query: 257 VLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ V + ++++WG+G +G LG G T P +V
Sbjct: 582 IAVLNSKAEVYTWGKGSNGQLGHGDTEYRRMPTLV 616
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 106/259 (40%), Gaps = 40/259 (15%)
Query: 42 LVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD 101
+ SF P + ++CG+ + V + G+ YSWG + G+LG G
Sbjct: 289 MTDSFLPKVLKSHVALDAQSISCGTNYAVLVTKQGQL--------YSWGEESGGRLGHGV 340
Query: 102 RESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
PK+I+ F+ + V CG FHT +T D+ W G G LG
Sbjct: 341 CSYVPHPKLIDEFDGST---VELADCGEFHTCAVT---TSGDL---YAWGDGDHNAGLLG 391
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTR 221
G+ S P ++ + + + ++ CG +HT+ V+SAG ++++G + +
Sbjct: 392 LGSGASHWKPVRILGQMEGINVRTISCGPWHTAFVTSAGKLFTFG---------DGTFGA 442
Query: 222 NEAGDAISPILISGNGPHGPKFQD---PVQVACGAAHTVLVT------DDGYKLWSWGRG 272
GD IS N P + + ++ ACG H+ V KL++WG G
Sbjct: 443 LGHGDRIST-----NIPREVEALNGCRTIRTACGVWHSAAVVSVFGEASSSGKLFTWGDG 497
Query: 273 RSGVLGTGKTIDFFAPAIV 291
G LG G P V
Sbjct: 498 DDGKLGHGDIASRLIPLSV 516
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 88/226 (38%), Gaps = 60/226 (26%)
Query: 17 IDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSA- 75
+ +AG L+ +G+ G +S+ P V +G ++ ACG H A+VS
Sbjct: 426 VTSAGKLFTFGDGTF---GALGHGDRISTNIPREVEALNGCRTIRTACGVWHSAAVVSVF 482
Query: 76 GETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS----------------- 118
GE L ++WG ++G+LG GD SRL P + + S
Sbjct: 483 GEASSSGKL--FTWGDGDDGKLGHGDIASRLIPLSVTELDTTSFQQVACGQSITVALSMS 540
Query: 119 ----------------------------PWAVYEVTCGSFHTALLTHRKRPNDMLESMCW 150
V EV CG H A+L + + +
Sbjct: 541 GQVYAMGTADPSQDDVVRAPSCIEGGLGKSFVQEVACGYHHIAVLNSK--------AEVY 592
Query: 151 TFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
T+G G NGQLGHG T+ +P VK L + + V CG +T+ +
Sbjct: 593 TWGKGSNGQLGHGDTEYRRMPTLVKAL-KGKQVRKVVCGSNYTATI 637
>gi|55832768|gb|AAV66897.1| truncated HERC6 [Homo sapiens]
Length = 322
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 115/246 (46%), Gaps = 31/246 (12%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRL 106
P P+ V V+CG EH +A+ G + +WGA + GQLG+G+ +E
Sbjct: 66 PEPIQALETLIVDLVSCGKEHSLAVCHKGRVF--------AWGAGSEGQLGIGEFKEISF 117
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT- 165
PK I T N + +V+CG +H+ L+ +S +++G +GQLG G
Sbjct: 118 TPKKIMTLND---IKIIQVSCGHYHSLALSK--------DSQVFSWGKNSHGQLGLGKEF 166
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
S P++V+ L + + L V G H+ +S G + WG L A RN
Sbjct: 167 PSQASPQRVRSL-EGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQL---ALSGRNVPV 222
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ P+ + K V ++CG AHT ++T DG K++++G RSG LG T +
Sbjct: 223 QSNKPLSVGA-----LKNLGVVYISCGDAHTAVLTQDG-KVFTFGDNRSGQLGYSPTPEK 276
Query: 286 FAPAIV 291
P +V
Sbjct: 277 RGPQLV 282
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 99/211 (46%), Gaps = 40/211 (18%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHTVVKV 62
V G SLA+ + G ++ WG + +EG + SFTP + + +++V
Sbjct: 80 VSCGKEHSLAVCHKGRVFAWG------AGSEGQLGIGEFKEISFTPKKIMTLNDIKIIQV 133
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWA 121
+CG H +AL +D +SWG N++GQLGLG S+ P+ + + + P A
Sbjct: 134 SCGHYHSLAL--------SKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSL-EGIPLA 184
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWT-FGLGEN--GQL---GHGTTQSALVPEQVK 175
+V G H+ L S+C T FG G N GQL G + P V
Sbjct: 185 --QVAAGGAHSFAL-----------SLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVG 231
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
L + + +V + CG HT+V++ G V+++G
Sbjct: 232 AL-KNLGVVYISCGDAHTAVLTQDGKVFTFG 261
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 90/221 (40%), Gaps = 34/221 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF----TPSPVWDFHGHT 58
+I V G SLA+ ++ WG ++ G L F +P V G
Sbjct: 129 KIIQVSCGHYHSLALSKDSQVFSWGK------NSHGQLGLGKEFPSQASPQRVRSLEGIP 182
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ +VA G H AL G ++ WG+N+ GQL L R ++ +
Sbjct: 183 LAQVAAGGAHSFALSLCGTSF--------GWGSNSAGQLALSGRNVPVQSNKPLSVGALK 234
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V ++CG HTA+LT + +TFG +GQLG+ T P+ V+ +
Sbjct: 235 NLGVVYISCGDAHTAVLTQ--------DGKVFTFGDNRSGQLGYSPTPEKRGPQLVERID 286
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
V +DCG S+ + W + + LC N+S+
Sbjct: 287 GLVS--QIDCGRLRG---CSSQTHFCWNICQ---LCDNSSV 319
>gi|297812127|ref|XP_002873947.1| hypothetical protein ARALYDRAFT_488831 [Arabidopsis lyrata subsp.
lyrata]
gi|297319784|gb|EFH50206.1| hypothetical protein ARALYDRAFT_488831 [Arabidopsis lyrata subsp.
lyrata]
Length = 1100
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 112/250 (44%), Gaps = 53/250 (21%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +ACG +H V + GE++ SWG + G+LG G + PK+I+ S
Sbjct: 309 VQYIACGGQHAVLVTKQGESF--------SWGEESEGRLGHGVDSNVQHPKLIDAL---S 357
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ V CG +H+ +T L +T+G G+ G LGHG S VP++V L
Sbjct: 358 TTNIELVACGEYHSCAVT--------LSGDLYTWGKGDFGILGHGNEVSHWVPKRVNFLM 409
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +++ S+ CG +HT+VV+SAG ++++G + G+ + GD S +
Sbjct: 410 EGIHVSSIACGPYHTAVVTSAGQLFTFG-DGTFGVLGH--------GDRKSVFI------ 454
Query: 239 HGPKFQDP------VQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGK 281
P+ D V+ ACG HT V + KL++WG G LG G
Sbjct: 455 --PREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKSRLGHGD 512
Query: 282 TIDFFAPAIV 291
P V
Sbjct: 513 KEPKLVPTCV 522
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 126/292 (43%), Gaps = 36/292 (12%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G S A+ +G L+ WG D G + VS + P V + G V +ACG
Sbjct: 364 VACGEYHSCAVTLSGDLYTWGKG---DFGILGHGNEVSHWVPKRVNFLMEGIHVSSIACG 420
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ +++G G LG GDR+S P+ +++
Sbjct: 421 PYHTAVVTSAGQ--------LFTFGDGTFGVLGHGDRKSVFIPREVDSLKG---LRTVRA 469
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ +LGHG + LVP V L +
Sbjct: 470 ACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKSRLGHGDKEPKLVPTCVAALVEPN 529
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG T ++++G V++ G P N D P + G
Sbjct: 530 F-CQVACGHSLTVALTTSGHVYTMG-------SPVYGQLGNPHADGKVPTRVEG------ 575
Query: 242 KFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K ++ACGA H ++T ++++WG+G +G LG G D +P +V
Sbjct: 576 KLHKSFVEEIACGAYHVAVLTSR-TEVYTWGKGSNGRLGHGDADDRNSPTLV 626
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 119/296 (40%), Gaps = 51/296 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
+ S+ G + + +AG L+ +G +G F ++ S F P V G
Sbjct: 413 HVSSIACGPYHTAVVTSAGQLFTFG---------DGTFGVLGHGDRKSVFIPREVDSLKG 463
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLV-------CYSWGANNNGQLGLGDRESRLRPK 109
V+ ACG H A+V E G ++WG + +LG GD+E +L P
Sbjct: 464 LRTVRAACGVWHTAAVV---EVMVGSSSSSNCSSGKLFTWGDGDKSRLGHGDKEPKLVPT 520
Query: 110 IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
+ + + +V CG T LT +T G GQLG+
Sbjct: 521 CVAALVEPN---FCQVACGHSLTVALT--------TSGHVYTMGSPVYGQLGNPHADGK- 568
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
VP +V+ ++ + CG +H +V++S +V++WG KG N L +A D S
Sbjct: 569 VPTRVEGKLHKSFVEEIACGAYHVAVLTSRTEVYTWG--KG----SNGRLGHGDADDRNS 622
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
P L+ K + +ACG+ T V W+ G +S G + +F
Sbjct: 623 PTLV-----ESLKDKQVKSIACGSNFTAAVC---LHKWASGMDQSMCSGCRQPFNF 670
>gi|357520085|ref|XP_003630331.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
gi|355524353|gb|AET04807.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
Length = 371
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 101/210 (48%), Gaps = 26/210 (12%)
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFN-QDSPWAVYEVTCGSFHTALLTHRKRP 141
++VC SWG +GQLG GD + RL P + F+ QD + VTCG+ +T + K
Sbjct: 123 NVVC-SWGRGEDGQLGHGDTDDRLLPTKLSAFDGQD----IVSVTCGADYT--VARSKSG 175
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
D+ +++G G+ G+LGHG +P ++ L Q + + + CG H V+
Sbjct: 176 KDV-----YSWGWGDFGRLGHGDPSDLFIPHPIRAL-QGLRIKQISCGDCHCLAVTMENK 229
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V SWG + N L D+ P I G + + VA GA H+V +T+
Sbjct: 230 VLSWGRNQ------NGELGLGTTKDSHVPQKILAF--EGIRIK---MVAAGAEHSVAITE 278
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
DG L+ WG GR G LG G T D P V
Sbjct: 279 DG-DLYGWGWGRYGNLGLGDTNDRLIPEKV 307
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 113/246 (45%), Gaps = 36/246 (14%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+ + F G +V V CG+++ VA + G+D+ YSWG + G+LG GD
Sbjct: 147 PTKLSAFDGQDIVSVTCGADYTVA-----RSKSGKDV--YSWGWGDFGRLGHGDPSDLFI 199
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
P I + +++CG H +T +E+ ++G +NG+LG GTT+
Sbjct: 200 PHPIRALQG---LRIKQISCGDCHCLAVT--------MENKVLSWGRNQNGELGLGTTKD 248
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEAG 225
+ VP+++ + + + V G H+ ++ GD+ W WG LGL +
Sbjct: 249 SHVPQKILAF-EGIRIKMVAAGAEHSVAITEDGDLYGWGWGRYGNLGL--------GDTN 299
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
D + P ++ +G V V+CG HT+ ++ G L++ G + G LG G D
Sbjct: 300 DRLIPEKVNIDG------DKIVMVSCGWRHTISISSSG-GLYTHGWSKYGQLGHGDFEDC 352
Query: 286 FAPAIV 291
P V
Sbjct: 353 LVPRKV 358
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 88/209 (42%), Gaps = 29/209 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGA---LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I SV G ++A +G W WG D G F P P+ G +
Sbjct: 158 IVSVTCGADYTVARSKSGKDVYSWGWG-----DFGRLGHGDPSDLFIPHPIRALQGLRIK 212
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+++CG H +A+ + SWG N NG+LGLG + P+ I F
Sbjct: 213 QISCGDCHCLAVTMENKVL--------SWGRNQNGELGLGTTKDSHVPQKILAFEGIR-- 262
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ V G+ H+ +T + + +G G G LG G T L+PE+V
Sbjct: 263 -IKMVAAGAEHSVAITE--------DGDLYGWGWGRYGNLGLGDTNDRLIPEKVNIDGDK 313
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+ +VS CG HT +SS+G +++ G K
Sbjct: 314 IVMVS--CGWRHTISISSSGGLYTHGWSK 340
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 73/176 (41%), Gaps = 25/176 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS-SFTPSPVWDFHGHTVVK 61
+I + G LA+ + WG + + E G S P + F G +
Sbjct: 210 RIKQISCGDCHCLAVTMENKVLSWGR----NQNGELGLGTTKDSHVPQKILAFEGIRIKM 265
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VA G+EH VA+ G+ Y WG G LGLGD RL P E N D
Sbjct: 266 VAAGAEHSVAITEDGD--------LYGWGWGRYGNLGLGDTNDRLIP---EKVNIDGD-K 313
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ V+CG HT ++ +T G + GQLGHG + LVP +V+ L
Sbjct: 314 IVMVSCGWRHTISISS--------SGGLYTHGWSKYGQLGHGDFEDCLVPRKVQAL 361
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAG- 200
N + ++ ++G GE+GQLGHG T L+P ++ +VSV CG +T S +G
Sbjct: 118 NQVSGNVVCSWGRGEDGQLGHGDTDDRLLPTKLSAFDGQ-DIVSVTCGADYTVARSKSGK 176
Query: 201 DVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT 260
DV+SWG L + D P I G + + Q++CG H + VT
Sbjct: 177 DVYSWGWGD------FGRLGHGDPSDLFIPHPI--RALQGLRIK---QISCGDCHCLAVT 225
Query: 261 DDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ K+ SWGR ++G LG G T D P +L
Sbjct: 226 MEN-KVLSWGRNQNGELGLGTTKDSHVPQKIL 256
>gi|449481389|ref|XP_004156168.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
1 [Cucumis sativus]
Length = 485
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 131/287 (45%), Gaps = 53/287 (18%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
LW+WG + + +FTP + + +V+CG+ HVVAL G+
Sbjct: 142 LWIWGQ----NQGSNFPRLFWGAFTPQTI-------IRQVSCGAVHVVALSDDGQLQ--- 187
Query: 83 DLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQ---DSP--WAVYEVTCGSFHTALLT 136
+WG N GQLG G L+ +II F + ++P + +V+CG +H+A ++
Sbjct: 188 -----AWGYNEYGQLGRGVTSEGLQGARIINAFAKFLDEAPELVTITKVSCGEYHSAAIS 242
Query: 137 HRKRPNDMLESMCWTFGLGENGQLGHGTTQSA---LVPEQVKELPQYVYLVSVDCGLFHT 193
+T+GLG GQLGH + QSA L+P +V L + + + CG HT
Sbjct: 243 ENGE--------VYTWGLGSMGQLGHCSLQSADKELIPRRVVALDG-ICVKDIACGGVHT 293
Query: 194 SVVSSAGDVWSWGMEKGLGLC--PNASLTRNEAGDAIS-----PILISGNGPHGPKFQDP 246
++ G +++WG + L P AGD+ + P+++ +G
Sbjct: 294 CAITQNGSLYAWGGGQVGQLGVGPQTGFFSCIAGDSETFLRNLPVVVVSDGVQ------- 346
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
VACG +HT++ T DG ++ WG G K+ + P+ V W
Sbjct: 347 -HVACGHSHTLVSTKDG-RIHGWGYNSYGQAANEKSTYAWYPSPVDW 391
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 104/263 (39%), Gaps = 73/263 (27%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ +ACG EH A+ S G + +WGAN+ GQLG G E PK + NQ
Sbjct: 63 LDIACGREHTAAVASDGSLF--------TWGANDFGQLGDGTEEKSKLPKKV---NQLQG 111
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLES----------------MCW------------- 150
V V+CG+ TA + + + L + + W
Sbjct: 112 EFVKSVSCGAHCTAAIAEPRENDGTLSTRRLWIWGQNQGSNFPRLFWGAFTPQTIIRQVS 171
Query: 151 ----------------TFGLGENGQLGHGTTQSALVPEQV--------KELPQYVYLVSV 186
+G E GQLG G T L ++ E P+ V + V
Sbjct: 172 CGAVHVVALSDDGQLQAWGYNEYGQLGRGVTSEGLQGARIINAFAKFLDEAPELVTITKV 231
Query: 187 DCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 246
CG +H++ +S G+V++WG+ +G + SL A + P + G +D
Sbjct: 232 SCGEYHSAAISENGEVYTWGLGS-MGQLGHCSL--QSADKELIPRRVV--ALDGICVKD- 285
Query: 247 VQVACGAAHTVLVTDDGYKLWSW 269
+ACG HT +T +G L++W
Sbjct: 286 --IACGGVHTCAITQNG-SLYAW 305
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 100/220 (45%), Gaps = 43/220 (19%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAV----YEVTCGSFHTALLTHRKRP 141
Y WG N +GQ G ++ +LR P+ + P + ++ CG HTA +
Sbjct: 22 YVWGYNQSGQTGRKGKDHQLRVPRQLHPDLFGCPGEINSRWLDIACGREHTAAVAS---- 77
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS---- 197
+ +T+G + GQLG GT + + +P++V +L Q ++ SV CG T+ ++
Sbjct: 78 ----DGSLFTWGANDFGQLGDGTEEKSKLPKKVNQL-QGEFVKSVSCGAHCTAAIAEPRE 132
Query: 198 -----SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACG 252
S +W WG +G ++ R G A +P I QV+CG
Sbjct: 133 NDGTLSTRRLWIWGQNQG------SNFPRLFWG-AFTPQTI------------IRQVSCG 173
Query: 253 AAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
A H V ++DDG +L +WG G LG G T + A ++
Sbjct: 174 AVHVVALSDDG-QLQAWGYNEYGQLGRGVTSEGLQGARII 212
>gi|73952751|ref|XP_860006.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 9
[Canis lupus familiaris]
Length = 1054
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 96/235 (40%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ G + WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKEGEFFCWGQNKYGQLGL--GIDCKKQASPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ +
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLRTQK---I 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 245 VYICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL GE + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKEGEFF--------CWGQNKYGQLGLGIDCKKQASPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RTQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 93/197 (47%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H++ ++ +G
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHSLALSKEG 156
Query: 264 YKLWSWGRGRSGVLGTG 280
+ + WG+ + G LG G
Sbjct: 157 -EFFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|357502467|ref|XP_003621522.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
gi|355496537|gb|AES77740.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
Length = 476
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 136/299 (45%), Gaps = 69/299 (23%)
Query: 19 NAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD-FHGHTVVK-VACGSEHVVALVSAG 76
+ G LW+WG +G S P W F +T +K V+CG+ HVVAL
Sbjct: 140 STGRLWVWGQ-------NQG------SNLPRLFWGAFEPNTTIKQVSCGAVHVVAL---- 182
Query: 77 ETYKGEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQ---DSPWAV--YEVTCGSF 130
ED + +WG N GQLG G L+ +II ++ + ++P V V+CG +
Sbjct: 183 ----SEDGLLQAWGYNEQGQLGRGVTCEGLQGARIISSYAKFLDEAPELVKITRVSCGEY 238
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ---SALVPEQVKELPQYVYLVSVD 187
HTA ++ + +T+GLG GQLGH + Q L+P +V L +++
Sbjct: 239 HTAAISDKGE--------VYTWGLGNMGQLGHTSLQYGDKELIPRRVVSLDS-IFIKDAA 289
Query: 188 CGLFHTSVVSSAGDVWSWGM----------EKGLGLC-PNASLT--RNEAGDAISPILIS 234
CG HT ++ G +++WG + GL C PN S T RN P+L+
Sbjct: 290 CGGVHTCALTQEGALYAWGGGQSGQLGLGPDTGLFSCIPNDSRTFFRN------IPVLVV 343
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
P G + VACG +HT++ DG ++ WG G K+ + P+ V W
Sbjct: 344 ---PKGVQL-----VACGHSHTLICMRDG-RIHGWGYNSYGQAANEKSTYAWYPSPVDW 393
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 98/220 (44%), Gaps = 43/220 (19%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAV----YEVTCGSFHTALLTHRKRP 141
Y WG N +GQ G +++ +LR PK + P + ++ CG HTA +
Sbjct: 24 YVWGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGLNTRWLDIACGREHTAAIAS---- 79
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS---- 197
+ + +T+G E GQLG GT + P++VK+L + ++ SV CG ++ ++
Sbjct: 80 ----DGLLFTWGANEFGQLGDGTEERRKHPKKVKQL-ESEFVKSVACGAHCSACIAEPRE 134
Query: 198 -----SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACG 252
S G +W WG +G L P L G + QV+CG
Sbjct: 135 NDGTVSTGRLWVWGQNQGSNL----------------PRLFWGAFEPNTTIK---QVSCG 175
Query: 253 AAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
A H V +++DG L +WG G LG G T + A ++
Sbjct: 176 AVHVVALSEDGL-LQAWGYNEQGQLGRGVTCEGLQGARII 214
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 106/268 (39%), Gaps = 83/268 (30%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF----- 114
+ +ACG EH A+ S G + ++WGAN GQLG G E R PK ++
Sbjct: 65 LDIACGREHTAAIASDG--------LLFTWGANEFGQLGDGTEERRKHPKKVKQLESEFV 116
Query: 115 ---------------------------------NQDSP-----WAVYE-------VTCGS 129
NQ S W +E V+CG+
Sbjct: 117 KSVACGAHCSACIAEPRENDGTVSTGRLWVWGQNQGSNLPRLFWGAFEPNTTIKQVSCGA 176
Query: 130 FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV--------KELPQYV 181
H L+ + + +G E GQLG G T L ++ E P+ V
Sbjct: 177 VHVVALSE--------DGLLQAWGYNEQGQLGRGVTCEGLQGARIISSYAKFLDEAPELV 228
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG +HT+ +S G+V++WG+ +G + SL + + I ++S +
Sbjct: 229 KITRVSCGEYHTAAISDKGEVYTWGLGN-MGQLGHTSLQYGDK-ELIPRRVVSLDSIF-- 284
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSW 269
+D ACG HT +T +G L++W
Sbjct: 285 -IKD---AACGGVHTCALTQEG-ALYAW 307
>gi|301755908|ref|XP_002913790.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
3 [Ailuropoda melanoleuca]
Length = 1054
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCKKQASPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ +
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLRTQK---I 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 245 VYICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 134/305 (43%), Gaps = 52/305 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCKKQASPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RTQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL-- 292
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGN 344
Query: 293 WPPLT 297
W P T
Sbjct: 345 WFPYT 349
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|291404281|ref|XP_002718504.1| PREDICTED: hect domain and RLD 4 isoform 1 [Oryctolagus cuniculus]
Length = 1057
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCKKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCKKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWG---RGRSGVLGTGKTI 283
++WG G+ G+LG+ + I
Sbjct: 106 YAWGLDSDGQLGLLGSEECI 125
>gi|351702482|gb|EHB05401.1| Putative E3 ubiquitin-protein ligase HERC4 [Heterocephalus glaber]
Length = 1057
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVSCGYYHSLALSKASEVFSWGQNKYGQLGL--GIDCKKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 132/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+V+CG H +AL A E + SWG N GQLGLG D + + P++I++
Sbjct: 140 VQVSCGYYHSLALSKASEVF--------SWGQNKYGQLGLGIDCKKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 104/252 (41%), Gaps = 68/252 (26%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL----------- 135
WG + GQLGLG D E L P+ + F V +V CG HT +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFVLDDGTVYTCGC 60
Query: 136 ---------THRKRPNDML----------------------ESMCWTFGLGENGQLG-HG 163
RK+P ++ + + +GL +GQLG G
Sbjct: 61 NDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLLG 120
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASL 219
+ + VP +K L + +V V CG +H+ +S A +V+SWG K GLG+
Sbjct: 121 SEECIRVPRNIKSLSD-IQIVQVSCGYYHSLALSKASEVFSWGQNKYGQLGLGI------ 173
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
+ SP LI G F +QVA G AH+ ++T G ++ WGR + G LG
Sbjct: 174 ---DCKKQTSPQLIK--SLLGIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGL 224
Query: 280 GKTIDFFAPAIV 291
D + P ++
Sbjct: 225 NDENDRYVPNLL 236
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWG---RGRSGVLGTGKTI 283
++WG G+ G+LG+ + I
Sbjct: 106 YAWGLDSDGQLGLLGSEECI 125
>gi|449447434|ref|XP_004141473.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
1 [Cucumis sativus]
Length = 485
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 131/287 (45%), Gaps = 53/287 (18%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
LW+WG + + +FTP + + +V+CG+ HVVAL G+
Sbjct: 142 LWIWGQ----NQGSNFPRLFWGAFTPQTI-------IRQVSCGAVHVVALSDDGQLQ--- 187
Query: 83 DLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQ---DSP--WAVYEVTCGSFHTALLT 136
+WG N GQLG G L+ +II F + ++P + +V+CG +H+A ++
Sbjct: 188 -----AWGYNEYGQLGRGVTSEGLQGARIINAFAKFLDEAPELVTITKVSCGEYHSAAIS 242
Query: 137 HRKRPNDMLESMCWTFGLGENGQLGHGTTQSA---LVPEQVKELPQYVYLVSVDCGLFHT 193
+T+GLG GQLGH + QSA L+P +V L + + + CG HT
Sbjct: 243 ENGE--------VYTWGLGSMGQLGHCSLQSADKELIPRRVVALDG-ICVKDIACGGVHT 293
Query: 194 SVVSSAGDVWSWGMEKGLGLC--PNASLTRNEAGDAIS-----PILISGNGPHGPKFQDP 246
++ G +++WG + L P AGD+ + P+++ +G
Sbjct: 294 CAITQNGSLYAWGGGQVGQLGVGPQTGFFSCIAGDSETFLRNLPVVVVSDGVQ------- 346
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
VACG +HT++ T DG ++ WG G K+ + P+ V W
Sbjct: 347 -HVACGHSHTLVSTKDG-RIHGWGYNSYGQAANEKSTYAWYPSPVDW 391
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 104/264 (39%), Gaps = 75/264 (28%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ +ACG EH A+ S G + +WGAN+ GQLG G E PK + NQ
Sbjct: 63 LDIACGREHTAAVASDGSLF--------TWGANDFGQLGDGTEEKSKLPKKV---NQLQG 111
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMC-----------------W------------ 150
V V+CG+ TA + R ND S C W
Sbjct: 112 EFVKSVSCGAHCTAAIA-EPRENDGTLSTCRLWIWGQNQGSNFPRLFWGAFTPQTIIRQV 170
Query: 151 -----------------TFGLGENGQLGHGTTQSALVPEQV--------KELPQYVYLVS 185
+G E GQLG G T L ++ E P+ V +
Sbjct: 171 SCGAVHVVALSDDGQLQAWGYNEYGQLGRGVTSEGLQGARIINAFAKFLDEAPELVTITK 230
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
V CG +H++ +S G+V++WG+ +G + SL A + P + G +D
Sbjct: 231 VSCGEYHSAAISENGEVYTWGLGS-MGQLGHCSL--QSADKELIPRRVV--ALDGICVKD 285
Query: 246 PVQVACGAAHTVLVTDDGYKLWSW 269
+ACG HT +T +G L++W
Sbjct: 286 ---IACGGVHTCAITQNG-SLYAW 305
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 100/220 (45%), Gaps = 43/220 (19%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAV----YEVTCGSFHTALLTHRKRP 141
Y WG N +GQ G ++ +LR P+ + P + ++ CG HTA +
Sbjct: 22 YVWGYNQSGQTGRKGKDHQLRVPRQLHPDLFGCPGEINSRWLDIACGREHTAAVAS---- 77
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS---- 197
+ +T+G + GQLG GT + + +P++V +L Q ++ SV CG T+ ++
Sbjct: 78 ----DGSLFTWGANDFGQLGDGTEEKSKLPKKVNQL-QGEFVKSVSCGAHCTAAIAEPRE 132
Query: 198 -----SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACG 252
S +W WG +G ++ R G A +P I QV+CG
Sbjct: 133 NDGTLSTCRLWIWGQNQG------SNFPRLFWG-AFTPQTI------------IRQVSCG 173
Query: 253 AAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
A H V ++DDG +L +WG G LG G T + A ++
Sbjct: 174 AVHVVALSDDG-QLQAWGYNEYGQLGRGVTSEGLQGARII 212
>gi|291404283|ref|XP_002718505.1| PREDICTED: hect domain and RLD 4 isoform 2 [Oryctolagus cuniculus]
Length = 1049
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCKKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCKKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWG---RGRSGVLGTGKTI 283
++WG G+ G+LG+ + I
Sbjct: 106 YAWGLDSDGQLGLLGSEECI 125
>gi|440230900|ref|YP_007344693.1| RCC1 domain-containing protein, alpha-tubulin suppressor [Serratia
marcescens FGI94]
gi|440052605|gb|AGB82508.1| RCC1 domain-containing protein, alpha-tubulin suppressor [Serratia
marcescens FGI94]
Length = 1812
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 125/299 (41%), Gaps = 39/299 (13%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
S +G S AID+ G LW WG ++ + D + +V +A
Sbjct: 1487 ISTGSGASRSQAIDDQGRLWAWG------------YNFAGALGDGTGIDRNRPVLVDLAS 1534
Query: 65 GSEHVVALVSAGETYK---GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
V V+AG + + ++WG N +GQLG G R + P I+ P A
Sbjct: 1535 LGSSKVTAVAAGRYHNLVLDDQSRLWAWGHNGDGQLGDGTRTNVAYPLPIQV--DLEPLA 1592
Query: 122 VYEVT---CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
VT G FH+ +L R W +G + G+LG GTT P V LP
Sbjct: 1593 GSTVTGVWAGDFHSIILDDLGR--------LWVWGKNKYGELGDGTTTYQTRPVLVDLLP 1644
Query: 179 -QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+++V G HT + G +W+WG+ L ++ R+ P+ +
Sbjct: 1645 LNGRKVMAVSAGEHHTVALDEQGGLWAWGLNDSGRLGDGSTTDRHR------PVQVDLTS 1698
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPL 296
G K V ++ G +TV + + G +LW+WG SG+LG G TI+ P V PL
Sbjct: 1699 LDGHKV---VAISAGGWNTVALDELG-RLWAWGPNESGLLGDGTTINQHRPVQVDLTPL 1753
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 128/298 (42%), Gaps = 49/298 (16%)
Query: 7 VKAGGMMSLAIDNAGALWMWG---NCPLPD-SSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+ AG + SL +DN +W WG + L D ++ + +++ TP G TVV +
Sbjct: 1433 MAAGSLHSLILDNKDRIWSWGFNRDGMLGDGTNRDRTRPVLTDLTP-----LGGSTVVSI 1487
Query: 63 ACGSEHVVALVSAGETYKGEDL-VCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ GS A + +D ++WG N G LG G R RP +++ + S
Sbjct: 1488 STGS-------GASRSQAIDDQGRLWAWGYNFAGALGDGTGIDRNRPVLVDLASLGSS-K 1539
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL--VPEQVKELPQ 179
V V G +H +L + R W +G +GQLG GT + +P QV P
Sbjct: 1540 VTAVAAGRYHNLVLDDQSR--------LWAWGHNGDGQLGDGTRTNVAYPLPIQVDLEPL 1591
Query: 180 YVYLVS-VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS-----PILI 233
V+ V G FH+ ++ G +W WG K E GD + P+L+
Sbjct: 1592 AGSTVTGVWAGDFHSIILDDLGRLWVWGKNK-----------YGELGDGTTTYQTRPVLV 1640
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+G K + V+ G HTV + + G LW+WG SG LG G T D P V
Sbjct: 1641 DLLPLNGRKV---MAVSAGEHHTVALDEQG-GLWAWGLNDSGRLGDGSTTDRHRPVQV 1694
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 96/213 (45%), Gaps = 33/213 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPV----WDF 54
S + V AG S+ +D+ G LW+WG L D +T ++ PV
Sbjct: 1594 STVTGVWAGDFHSIILDDLGRLWVWGKNKYGELGDGTT--------TYQTRPVLVDLLPL 1645
Query: 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
+G V+ V+ G H VAL G ++WG N++G+LG G R RP ++
Sbjct: 1646 NGRKVMAVSAGEHHTVALDEQGG--------LWAWGLNDSGRLGDGSTTDRHRPVQVDLT 1697
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
+ D V ++ G ++T L R W +G E+G LG GTT + P QV
Sbjct: 1698 SLDG-HKVVAISAGGWNTVALDELGR--------LWAWGPNESGLLGDGTTINQHRPVQV 1748
Query: 175 KELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
P +V+V G F+ VV G++W+WG
Sbjct: 1749 DLTPLNGRKVVAVSAGSFYFFVVDDRGELWAWG 1781
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 124/295 (42%), Gaps = 35/295 (11%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMW---GNCPLPDSS-TEGGFSLVSSFTPSPVWDFHGH 57
S++ +V AG +L +D+ LW W G+ L D + T + L P+ G
Sbjct: 1538 SKVTAVAAGRYHNLVLDDQSRLWAWGHNGDGQLGDGTRTNVAYPLPIQVDLEPL---AGS 1594
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
TV V G H + L G + WG N G+LG G + RP +++ +
Sbjct: 1595 TVTGVWAGDFHSIILDDLGR--------LWVWGKNKYGELGDGTTTYQTRPVLVDLLPLN 1646
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V V+ G HT L + W +GL ++G+LG G+T P QV
Sbjct: 1647 G-RKVMAVSAGEHHTVALDE--------QGGLWAWGLNDSGRLGDGSTTDRHRPVQVDLT 1697
Query: 178 PQYVY-LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ +V++ G ++T + G +W+WG + L ++ ++ P+ +
Sbjct: 1698 SLDGHKVVAISAGGWNTVALDELGRLWAWGPNESGLLGDGTTINQHR------PVQVDLT 1751
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+G K V V+ G+ + +V D G +LW+WG G LG G P V
Sbjct: 1752 PLNGRKV---VAVSAGSFYFFVVDDRG-ELWAWGSNSYGQLGDGTKTRRLKPVRV 1802
>gi|307106699|gb|EFN54944.1| hypothetical protein CHLNCDRAFT_134694 [Chlorella variabilis]
Length = 434
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 117/233 (50%), Gaps = 28/233 (12%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+ +ACGS H +AL+S T G + SWG +GQLG GD E R P+ + +
Sbjct: 9 VIGLACGSSHSLALIS---TPSGS--MVLSWGRGEDGQLGHGDAEDRQEPQAVFSLLHRG 63
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+V+ CG+ ++ + + +++G G+ G+LG G + +P + L
Sbjct: 64 ATSVH---CGAEYSMAVAGGDK-------QVYSWGWGDFGRLGTGDVKDVFIPCPLPALA 113
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ SV CG HT V ++ G ++++G + G C S+ D + P L++
Sbjct: 114 GR-RVASVACGDTHTLVATAEGQLFAFGRNQN-GQCGLGSIQ-----DCLEPQLVT---- 162
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ ++ V VACGA H++ VT +G +++ WG GR G +G G++ D P +
Sbjct: 163 -ALQGKEVVAVACGAEHSMCVTSEG-EVYCWGWGRYGNIGDGESQDRHLPTLA 213
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 111/284 (39%), Gaps = 42/284 (14%)
Query: 6 SVKAGGMMSLAI---DNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
SV G S+A+ D W WG D G + F P P+ G V V
Sbjct: 66 SVHCGAEYSMAVAGGDKQVYSWGWG-----DFGRLGTGDVKDVFIPCPLPALAGRRVASV 120
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG H + + G+ +++G N NGQ GLG + L P+++ V
Sbjct: 121 ACGDTHTLVATAEGQL--------FAFGRNQNGQCGLGSIQDCLEPQLVTALQGKE---V 169
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
V CG+ H+ +T E CW G G G +G G +Q +P K L + V
Sbjct: 170 VAVACGAEHSMCVTSEG------EVYCW--GWGRYGNIGDGESQDRHLPTLAKGL-EGVK 220
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+ V+CG H+ V G +++WG A L + + D P +
Sbjct: 221 VAQVNCGWRHSIAVDEGGAMYTWGWGA------YAQLMQGDRKDHYVPKRVE-------A 267
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFF 286
Q VA G HT+ G +L++ G + G G G D
Sbjct: 268 VQQVATVAGGWRHTMAADSQG-RLFASGWNKFGQCGVGHNEDVV 310
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 125/289 (43%), Gaps = 43/289 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF-SLVSSFTPSPVWDFHGHTVVK 61
++ SV G +L G L+ +G + + + G S+ P V G VV
Sbjct: 116 RVASVACGDTHTLVATAEGQLFAFGR----NQNGQCGLGSIQDCLEPQLVTALQGKEVVA 171
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VACG+EH + + S GE Y C+ WG G +G G+ + R P + +
Sbjct: 172 VACGAEHSMCVTSEGEVY------CWGWG--RYGNIGDGESQDRHLPTLAKGLEGVK--- 220
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V +V CG H+ + D +M +T+G G QL G + VP++V+ + Q
Sbjct: 221 VAQVNCGWRHSIAV-------DEGGAM-YTWGWGAYAQLMQGDRKDHYVPKRVEAVQQ-- 270
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ +V G HT S G +++ G K G+ N + R + +A++ +
Sbjct: 271 -VATVAGGWRHTMAADSQGRLFASGWNKFGQCGVGHNEDVVRVQQVEALAGERV------ 323
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
VQV G HT+ VT G K +SWGR +G LG D +P
Sbjct: 324 -------VQVKSGWKHTMAVTHTG-KFFSWGRNVNGQLGHSGMQDSNSP 364
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 72/181 (39%), Gaps = 36/181 (19%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
++ V G S+A+D GA++ WG G ++ + + P V
Sbjct: 220 KVAQVNCGWRHSIAVDEGGAMYTWG---------WGAYAQLMQGDRKDHYVPKRVEAVQ- 269
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
V VA G H +A S G + G N GQ G+G E +R + +E
Sbjct: 270 -QVATVAGGWRHTMAADSQGRLFAS--------GWNKFGQCGVGHNEDVVRVQQVEALAG 320
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ V +V G HT +TH + +++G NGQLGH Q + P ++
Sbjct: 321 ER---VVQVKSGWKHTMAVTHTGK--------FFSWGRNVNGQLGHSGMQDSNSPVELAA 369
Query: 177 L 177
L
Sbjct: 370 L 370
>gi|417405688|gb|JAA49548.1| Putative e3 ubiquitin-protein ligase herc4 [Desmodus rotundus]
Length = 1049
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 130/297 (43%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + SWG N GQLGLG D + P++I++ +
Sbjct: 140 VQVACGYYHSLALSKASEVF--------SWGQNKYGQLGLGIDCNKQASPQLIKSL---T 188
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 189 GIPFMQVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RTQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFSWGQNKYGQLGL--GIDCNKQASPQLIKSLTGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ +
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLRTQK---I 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 245 VYICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 104/252 (41%), Gaps = 68/252 (26%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL----------- 135
WG + GQLGLG D E L P+ + F V +V CG HT +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFVLDDGTVYTCGC 60
Query: 136 ---------THRKRPNDML----------------------ESMCWTFGLGENGQLG-HG 163
RK+P ++ + + +GL +GQLG G
Sbjct: 61 NDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLLG 120
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASL 219
+ + VP +K L + +V V CG +H+ +S A +V+SWG K GLG+
Sbjct: 121 SEECIRVPRNIKSLSD-IQIVQVACGYYHSLALSKASEVFSWGQNKYGQLGLGI------ 173
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
+ SP LI G F +QVA G AH+ ++T G ++ WGR + G LG
Sbjct: 174 ---DCNKQASPQLIK--SLTGIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGL 224
Query: 280 GKTIDFFAPAIV 291
D + P ++
Sbjct: 225 NDENDRYVPNLL 236
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|354500120|ref|XP_003512150.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like, partial
[Cricetulus griseus]
Length = 631
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 138/297 (46%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIVHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQTSPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHGSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 115/278 (41%), Gaps = 66/278 (23%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
++ +VACG H V L+ GE Y + G N+ GQLG +RE +I +Q
Sbjct: 35 SIKEVACGGNHSVFLLEDGEVY--------TCGVNSKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IVHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q L V CG +H +++ G ++WG + GLG S R + + I
Sbjct: 134 LNQQTIL-QVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGIPL 192
Query: 231 ILISGNGPH-------GPKF-----------------------------QDPVQVACGAA 254
++ G H G F Q V ++CG
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEE 252
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
HT ++T G ++++G G G LG G D P VL
Sbjct: 253 HTAVLTKSG-GVFTFGAGSCGQLGHGSMNDEVNPRRVL 289
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG G + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHGSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|330797026|ref|XP_003286564.1| hypothetical protein DICPUDRAFT_77429 [Dictyostelium purpureum]
gi|325083469|gb|EGC36921.1| hypothetical protein DICPUDRAFT_77429 [Dictyostelium purpureum]
Length = 1440
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 29/216 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPL---------PDSSTEGGFSLVSSFTPSPVWD 53
+ +KAG +S AI + G L++WG P S+ +++ F D
Sbjct: 127 NVIKIKAGNNISAAITDKGDLYIWGTSSFGQLGNGKMNPKSNQFIPTTILEPFISEQEKD 186
Query: 54 ---FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKI 110
+ V G++H +A+ + G +SWG+N GQLGLG ++L P
Sbjct: 187 NPIYQNIQYSNVCFGAQHTIAVSTTG--------TIFSWGSNQYGQLGLGHCNTKLVPVP 238
Query: 111 IETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALV 170
+ FN+ S V ++ G+FH++LLT LE + +G + GQLG G T V
Sbjct: 239 VR-FNRHSTRIVVDIASGNFHSSLLT--------LEGDVYLWGSNQYGQLGQGDTIDLNV 289
Query: 171 PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
P++VK ++ + + G HT +++ DV+++G
Sbjct: 290 PKKVKGSIEFKKINRMALGNNHTILLTKDQDVYTFG 325
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 107/251 (42%), Gaps = 51/251 (20%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV V+CG H + L S YK +S G N GQLG+ + P ++T +
Sbjct: 76 VVSVSCGFNHTLLLTSE---YK-----IFSMGFNQVGQLGIENVVDSAVPLPVDTLQK-- 125
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG------------TTQ 166
V ++ G+ +A +T + + +G GQLG+G T
Sbjct: 126 -CNVIKIKAGNNISAAITDKGD--------LYIWGTSSFGQLGNGKMNPKSNQFIPTTIL 176
Query: 167 SALVPEQVKELPQY--VYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLT 220
+ EQ K+ P Y + +V G HT VS+ G ++SWG + GLG C N L
Sbjct: 177 EPFISEQEKDNPIYQNIQYSNVCFGAQHTIAVSTTGTIFSWGSNQYGQLGLGHC-NTKLV 235
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
P+ + N H + V +A G H+ L+T +G ++ WG + G LG G
Sbjct: 236 ---------PVPVRFNR-HSTRIV--VDIASGNFHSSLLTLEG-DVYLWGSNQYGQLGQG 282
Query: 281 KTIDFFAPAIV 291
TID P V
Sbjct: 283 DTIDLNVPKKV 293
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 119/276 (43%), Gaps = 51/276 (18%)
Query: 41 SLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG 100
++V S P PV V+K+ G+ +SA T KG+ Y WG ++ GQLG G
Sbjct: 110 NVVDSAVPLPVDTLQKCNVIKIKAGNN-----ISAAITDKGD---LYIWGTSSFGQLGNG 161
Query: 101 DRESRLRPK--------IIETF--NQDSPWAVYE------VTCGSFHTALLTHRKRPNDM 144
++ PK I+E F Q+ +Y+ V G+ HT ++
Sbjct: 162 ----KMNPKSNQFIPTTILEPFISEQEKDNPIYQNIQYSNVCFGAQHTIAVS-------- 209
Query: 145 LESMCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVW 203
+++G + GQLG G + LVP V+ +V + G FH+S+++ GDV+
Sbjct: 210 TTGTIFSWGSNQYGQLGLGHCNTKLVPVPVRFNRHSTRIVVDIASGNFHSSLLTLEGDVY 269
Query: 204 SWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
WG + L + + D P + G +F+ ++A G HT+L+T D
Sbjct: 270 LWGSNQY------GQLGQGDTIDLNVPKKVKG----SIEFKKINRMALGNNHTILLTKD- 318
Query: 264 YKLWSWGRGRSGVLGTGK---TIDFFAPAIVLWPPL 296
++++G LG G + P ++ P L
Sbjct: 319 QDVYTFGNNEFYQLGHGSMGGKNKIYFPTLIQKPRL 354
>gi|444729790|gb|ELW70194.1| putative E3 ubiquitin-protein ligase HERC6 [Tupaia chinensis]
Length = 1378
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 97/199 (48%), Gaps = 29/199 (14%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLV--SSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGET 78
G L+ WG +S + G + SS TP V G +V+++ G H +AL G
Sbjct: 913 GELFAWGQ----NSHGQLGLGRIFPSSPTPQIVEHLAGVPLVQISAGEAHSMALSMTGNV 968
Query: 79 YKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
Y SWG N+ GQLGLG ES+ P ++ + V + CG HTALLT
Sbjct: 969 Y--------SWGKNDFGQLGLGHTESKDSPSLLRALDSQK---VDFLACGGSHTALLTQ- 1016
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT-SVVS 197
+ + +TFG G+ GQLGH +T+ L P V EL + + CG +HT + VS
Sbjct: 1017 -------DGLVFTFGAGKYGQLGHSSTRDELRPCLVTELLGN-RVTQIACGRWHTLAYVS 1068
Query: 198 SAGDVWSWGMEKG--LGLC 214
G V+++G K LG C
Sbjct: 1069 ELGKVFAFGSGKNGQLGNC 1087
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 106/238 (44%), Gaps = 31/238 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF--SLVSSFTPSPVWDFHGHTVV 60
+I V G SLA+ G ++ WG +S + G + S +P V G +
Sbjct: 151 KIIQVSCGYYHSLALSEDGQVFSWGK----NSHGQLGLGKEVPSQTSPQRVRSLEGIPLA 206
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL-GDRESRLRPKIIETFNQDSP 119
+VA G H AL +G + + WG+N+ GQL L G + R K + +
Sbjct: 207 QVAAGGAHSFALSLSGTS--------FGWGSNSAGQLALSGTKAPVQRYKPLSVGALKTL 258
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
VY ++CGS HTA+LT +TFG +GQLGH Q P+ V+ +
Sbjct: 259 GVVY-ISCGSEHTAVLTQ--------NGAVYTFGANSSGQLGHSAEQRG--PQCVERIDG 307
Query: 180 YVYLVSVDCGLFHT-SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
V +DCG +HT + V + G V S+G G N++ + +A LIS +
Sbjct: 308 LV--SQIDCGSYHTLAYVYTTGQVVSFG--HGPSCTSNSTHSETVTDNADISCLISAD 361
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 31/233 (13%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRL 106
P + F V V+CG EH +A+ G ++WGA + GQLG+G+ +E
Sbjct: 88 PEQIQAFETLRVDLVSCGKEHSLAVCHKGRV--------FAWGAGSEGQLGIGEFKERSF 139
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-T 165
P+ I+ + + +V+CG +H+ L+ + +++G +GQLG G
Sbjct: 140 TPQKIKAL---AGIKIIQVSCGYYHSLALSE--------DGQVFSWGKNSHGQLGLGKEV 188
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
S P++V+ L + + L V G H+ +S +G + WG L + + +
Sbjct: 189 PSQTSPQRVRSL-EGIPLAQVAAGGAHSFALSLSGTSFGWGSNSAGQLALSGTKAPVQRY 247
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
+S + G V ++CG+ HT ++T +G ++++G SG LG
Sbjct: 248 KPLSVGALKTLG--------VVYISCGSEHTAVLTQNG-AVYTFGANSSGQLG 291
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 121/276 (43%), Gaps = 48/276 (17%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL----VSSFTPSPVWDFHGHTVVKV 62
V G SLA+ + G ++ WG + +EG + SFTP + G +++V
Sbjct: 102 VSCGKEHSLAVCHKGRVFAWG------AGSEGQLGIGEFKERSFTPQKIKALAGIKIIQV 155
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWA 121
+CG H +AL ED +SWG N++GQLGLG S+ P+ + + + P A
Sbjct: 156 SCGYYHSLAL--------SEDGQVFSWGKNSHGQLGLGKEVPSQTSPQRVRSL-EGIPLA 206
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALV---PEQVKELP 178
+V G H+ L+ L + +G GQL T++ + P V L
Sbjct: 207 --QVAAGGAHSFALS--------LSGTSFGWGSNSAGQLALSGTKAPVQRYKPLSVGAL- 255
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ + +V + CG HT+V++ G V+++G L +A + + I ++
Sbjct: 256 KTLGVVYISCGSEHTAVLTQNGAVYTFGANSSGQLGHSAEQRGPQCVERIDGLV------ 309
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRS 274
Q+ CG+ HT+ ++ S+G G S
Sbjct: 310 --------SQIDCGSYHTLAYVYTTGQVVSFGHGPS 337
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 32/201 (15%)
Query: 87 YSWGANNNGQLGLGD-RESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
++WG N++GQLGLG S P+I+E + + +++ G H+ L+ +
Sbjct: 916 FAWGQNSHGQLGLGRIFPSSPTPQIVEHL---AGVPLVQISAGEAHSMALS--------M 964
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKEL-PQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+++G + GQLG G T+S P ++ L Q V ++ CG HT++++ G V++
Sbjct: 965 TGNVYSWGKNDFGQLGLGHTESKDSPSLLRALDSQKVDFLA--CGGSHTALLTQDGLVFT 1022
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILIS---GNGPHGPKFQDPVQVACGAAHTVLVTD 261
+G K L + D + P L++ GN Q+ACG HT+
Sbjct: 1023 FGAGK------YGQLGHSSTRDELRPCLVTELLGN--------RVTQIACGRWHTLAYVS 1068
Query: 262 DGYKLWSWGRGRSGVLGTGKT 282
+ K++++G G++G LG T
Sbjct: 1069 ELGKVFAFGSGKNGQLGNCGT 1089
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 23/188 (12%)
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLT-----HRKRPNDMLESMC---WTFGLGENGQLGHG 163
E F ++S VYE H +L H+ + ++ + +C + +G +GQLG G
Sbjct: 873 EQFEKNS---VYEQEYHRSHPTILMFWKAFHKLKLDEKKKFLCGELFAWGQNSHGQLGLG 929
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE 223
+ Q+ E V LV + G H+ +S G+V+SWG + G L E
Sbjct: 930 RIFPSSPTPQIVEHLAGVPLVQISAGEAHSMALSMTGNVYSWG-KNDFG---QLGLGHTE 985
Query: 224 AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
+ D SP L+ F +ACG +HT L+T DG ++++G G+ G LG T
Sbjct: 986 SKD--SPSLLRALDSQKVDF-----LACGGSHTALLTQDGL-VFTFGAGKYGQLGHSSTR 1037
Query: 284 DFFAPAIV 291
D P +V
Sbjct: 1038 DELRPCLV 1045
>gi|356526924|ref|XP_003532065.1| PREDICTED: uncharacterized protein LOC100797527 [Glycine max]
Length = 1099
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 133/291 (45%), Gaps = 32/291 (10%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ +G L+ WG+ + G + VS + P V G V ++CG
Sbjct: 362 VACGEYHTCAVTLSGDLYTWGDGTY-NYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCG 420
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + S+G+ +++G G LG GDR+S P+ IE+ +
Sbjct: 421 PWHTAVVTSSGQ--------LFTFGDGTFGVLGHGDRKSVSLPREIESLKG---LRTVQA 469
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ G+LGHG +S LVP +V L +
Sbjct: 470 ACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTRVVTLDEPN 529
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA-GDAISPILISGNGPHG 240
+ V CG T +S G V++ +G C L +A G +P+ G
Sbjct: 530 F-CQVACGHSMTVALSRLGHVYT------MGSCVYGHLGNTQADGKLPTPV----EGKLS 578
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F + ++ACGA H ++T ++++WG+G +G LG G T D P +V
Sbjct: 579 KSFVE--EIACGAYHVAVLTSR-TEVFTWGKGANGCLGHGDTNDRNTPTLV 626
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 109/251 (43%), Gaps = 51/251 (20%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +ACG EH + GE + SWG + G+LG G PK+IE+ + +
Sbjct: 307 VQNIACGGEHAAMVTKQGEVF--------SWGGESGGRLGHGVDSDVPHPKLIESLSNTN 358
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG--ENGQLGHGTTQSALVPEQVKE 176
+ V CG +HT +T L +T+G G G LGHG S VP++V
Sbjct: 359 ---IELVACGEYHTCAVT--------LSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNG 407
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPIL 232
+ +++ S+ CG +HT+VV+S+G ++++G G G + SL R I +
Sbjct: 408 PLEGIHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDRKSVSLPRE-----IESL- 461
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGK 281
K VQ ACG HT V + KL++WG G G LG G
Sbjct: 462 ---------KGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGD 512
Query: 282 TIDFFAPAIVL 292
P V+
Sbjct: 513 KESKLVPTRVV 523
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 109/267 (40%), Gaps = 42/267 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
+ S+ G + + ++G L+ +G +G F ++ S P + G
Sbjct: 413 HVSSISCGPWHTAVVTSSGQLFTFG---------DGTFGVLGHGDRKSVSLPREIESLKG 463
Query: 57 HTVVKVACGSEHVVA----LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE 112
V+ ACG H A +V + ++WG + G+LG GD+ES+L P +
Sbjct: 464 LRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTRVV 523
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPE 172
T ++ + +V CG T L+ +T G G LG+ T +P
Sbjct: 524 TLDEPN---FCQVACGHSMTVALSRL--------GHVYTMGSCVYGHLGN-TQADGKLPT 571
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
V+ ++ + CG +H +V++S +V++WG KG C L + D +P L
Sbjct: 572 PVEGKLSKSFVEEIACGAYHVAVLTSRTEVFTWG--KGANGC----LGHGDTNDRNTPTL 625
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLV 259
+ K + +ACG T +
Sbjct: 626 V-----EALKDKQVKSIACGTNFTAAI 647
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G +L+P+ + E + + ++ CG H ++V+ G+V+SWG E G L
Sbjct: 288 GVKMDSLLPKAL-ESAVVLDVQNIACGGEHAAMVTKQGEVFSWGGESG------GRLGHG 340
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTG 280
D P LI + VACG HT VT G L++WG G G+LG G
Sbjct: 341 VDSDVPHPKLIESLSNTNIEL-----VACGEYHTCAVTLSG-DLYTWGDGTYNYGLLGHG 394
Query: 281 KTIDFFAPAIVLWP 294
+ + P V P
Sbjct: 395 NQVSHWVPKRVNGP 408
>gi|297673957|ref|XP_002815007.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 2
[Pongo abelii]
Length = 1050
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 138/297 (46%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIIHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+++V+CG+ H +AL S G+ + +WG N++GQLGLG + S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALASDGQFF--------TWGKNSHGQLGLGKEFPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGAGS------YGQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 108/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IIHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H ++S G ++WG + GLG AS R + + I P
Sbjct: 134 LNQQT-ILQVSCGNWHCLALASDGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEKDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSYGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|242091255|ref|XP_002441460.1| hypothetical protein SORBIDRAFT_09g027250 [Sorghum bicolor]
gi|241946745|gb|EES19890.1| hypothetical protein SORBIDRAFT_09g027250 [Sorghum bicolor]
Length = 1020
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 134/300 (44%), Gaps = 40/300 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTV 59
+S + + G + A+ +G L+ WG+ + G + S + P V G V
Sbjct: 306 VSNVEYIACGEFHTCAVTASGDLYTWGD-GYYNVGLLGNGAGASHWLPKRVSGPLEGVQV 364
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ V+CGS H S+G+ + ++G G LG G RE+ PK +E S
Sbjct: 365 LSVSCGSWHSALTTSSGKVF--------TFGDGTFGALGHGKRETVGYPKEVEAL---SG 413
Query: 120 WAVYEVTCGSFHTALLTHRKR--PNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ +V CG +H+A + +++ +T+G G+ QLGHG S LVP V+ L
Sbjct: 414 FRTMKVACGLWHSAAIVESSNHVSINVISRKLYTWGAGDKNQLGHGDKDSRLVPTCVQSL 473
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
Y + V CG T +S++G V++ +G N L N D PI +
Sbjct: 474 IDYSFH-QVACGHSMTIALSTSGHVFT------MGSSSNGQLG-NPKSDGKQPIPV---- 521
Query: 238 PHGPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
QD + +++CG+ H ++T ++++WG G +G LG G D P +V
Sbjct: 522 ------QDRLSGELVEEISCGSCHVAVLTSRS-EVYTWGMGANGRLGHGGVEDKKKPTLV 574
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 120/290 (41%), Gaps = 45/290 (15%)
Query: 17 IDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTVVKVACGSEHVVAL 72
I++ G +++WG EG + + S P P+ V ++ACG H+
Sbjct: 211 IESLGDVYVWGEVWTDVIPAEGSTNYLCSKADILIPKPLESDVVLDVQQIACGYRHIALT 270
Query: 73 VSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHT 132
GE + +WG G+LG G RPK++E + V + CG FHT
Sbjct: 271 TRQGEVF--------AWGEELGGRLGHGTDADISRPKLVEALAVSN---VEYIACGEFHT 319
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFH 192
+T D+ W G G LG+G S +P++V + V ++SV CG +H
Sbjct: 320 CAVT---ASGDL---YTWGDGYYNVGLLGNGAGASHWLPKRVSGPLEGVQVLSVSCGSWH 373
Query: 193 TSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
+++ +S+G V+++ G LG ++ + +A+S ++VA
Sbjct: 374 SALTTSSGKVFTFGDGTFGALGHGKRETVGYPKEVEALSGFRT-------------MKVA 420
Query: 251 CGAAHTVLVTDD---------GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
CG H+ + + KL++WG G LG G P V
Sbjct: 421 CGLWHSAAIVESSNHVSINVISRKLYTWGAGDKNQLGHGDKDSRLVPTCV 470
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 108/262 (41%), Gaps = 34/262 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHTV 59
Q+ SV G S ++G ++ +G+ T G T P V G
Sbjct: 363 QVLSVSCGSWHSALTTSSGKVFTFGD------GTFGALGHGKRETVGYPKEVEALSGFRT 416
Query: 60 VKVACGSEHVVALVSAGETYKGEDLV--CYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+KVACG H A+V + + Y+WGA + QLG GD++SRL P +++
Sbjct: 417 MKVACGLWHSAAIVESSNHVSINVISRKLYTWGAGDKNQLGHGDKDSRLVPTCVQSLID- 475
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
++ ++V CG T L+ +T G NGQLG+ + P V++
Sbjct: 476 --YSFHQVACGHSMTIALS--------TSGHVFTMGSSSNGQLGNPKSDGKQ-PIPVQDR 524
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ + CG H +V++S +V++WGM N L D P L+
Sbjct: 525 LSGELVEEISCGSCHVAVLTSRSEVYTWGMG------ANGRLGHGGVEDKKKPTLV---- 574
Query: 238 PHGPKFQDPVQVACGAAHTVLV 259
K + +ACG+ T +
Sbjct: 575 -EALKDRHVKSIACGSNFTTCI 595
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 18/113 (15%)
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+ CG H ++ + G+V++WG E G LG +A ++R + +A++
Sbjct: 260 IACGYRHIALTTRQGEVFAWGEELGGRLGHGTDADISRPKLVEALA-------------V 306
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTGKTIDFFAPAIVLWP 294
+ +ACG HT VT G L++WG G G+LG G + P V P
Sbjct: 307 SNVEYIACGEFHTCAVTASG-DLYTWGDGYYNVGLLGNGAGASHWLPKRVSGP 358
>gi|449481391|ref|XP_004156169.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
2 [Cucumis sativus]
Length = 472
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 131/287 (45%), Gaps = 53/287 (18%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
LW+WG + + +FTP + + +V+CG+ HVVAL G+
Sbjct: 142 LWIWGQ----NQGSNFPRLFWGAFTPQTI-------IRQVSCGAVHVVALSDDGQLQ--- 187
Query: 83 DLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQ---DSP--WAVYEVTCGSFHTALLT 136
+WG N GQLG G L+ +II F + ++P + +V+CG +H+A ++
Sbjct: 188 -----AWGYNEYGQLGRGVTSEGLQGARIINAFAKFLDEAPELVTITKVSCGEYHSAAIS 242
Query: 137 HRKRPNDMLESMCWTFGLGENGQLGHGTTQSA---LVPEQVKELPQYVYLVSVDCGLFHT 193
+T+GLG GQLGH + QSA L+P +V L + + + CG HT
Sbjct: 243 ENGE--------VYTWGLGSMGQLGHCSLQSADKELIPRRVVALDG-ICVKDIACGGVHT 293
Query: 194 SVVSSAGDVWSWGMEKGLGLC--PNASLTRNEAGDAIS-----PILISGNGPHGPKFQDP 246
++ G +++WG + L P AGD+ + P+++ +G
Sbjct: 294 CAITQNGSLYAWGGGQVGQLGVGPQTGFFSCIAGDSETFLRNLPVVVVSDGVQ------- 346
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
VACG +HT++ T DG ++ WG G K+ + P+ V W
Sbjct: 347 -HVACGHSHTLVSTKDG-RIHGWGYNSYGQAANEKSTYAWYPSPVDW 391
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 104/263 (39%), Gaps = 73/263 (27%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ +ACG EH A+ S G + +WGAN+ GQLG G E PK + NQ
Sbjct: 63 LDIACGREHTAAVASDGSLF--------TWGANDFGQLGDGTEEKSKLPKKV---NQLQG 111
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLES----------------MCW------------- 150
V V+CG+ TA + + + L + + W
Sbjct: 112 EFVKSVSCGAHCTAAIAEPRENDGTLSTRRLWIWGQNQGSNFPRLFWGAFTPQTIIRQVS 171
Query: 151 ----------------TFGLGENGQLGHGTTQSALVPEQV--------KELPQYVYLVSV 186
+G E GQLG G T L ++ E P+ V + V
Sbjct: 172 CGAVHVVALSDDGQLQAWGYNEYGQLGRGVTSEGLQGARIINAFAKFLDEAPELVTITKV 231
Query: 187 DCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 246
CG +H++ +S G+V++WG+ +G + SL A + P + G +D
Sbjct: 232 SCGEYHSAAISENGEVYTWGL-GSMGQLGHCSL--QSADKELIPRRVV--ALDGICVKD- 285
Query: 247 VQVACGAAHTVLVTDDGYKLWSW 269
+ACG HT +T +G L++W
Sbjct: 286 --IACGGVHTCAITQNG-SLYAW 305
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 100/220 (45%), Gaps = 43/220 (19%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAV----YEVTCGSFHTALLTHRKRP 141
Y WG N +GQ G ++ +LR P+ + P + ++ CG HTA +
Sbjct: 22 YVWGYNQSGQTGRKGKDHQLRVPRQLHPDLFGCPGEINSRWLDIACGREHTAAVAS---- 77
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS---- 197
+ +T+G + GQLG GT + + +P++V +L Q ++ SV CG T+ ++
Sbjct: 78 ----DGSLFTWGANDFGQLGDGTEEKSKLPKKVNQL-QGEFVKSVSCGAHCTAAIAEPRE 132
Query: 198 -----SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACG 252
S +W WG +G ++ R G A +P I QV+CG
Sbjct: 133 NDGTLSTRRLWIWGQNQG------SNFPRLFWG-AFTPQTI------------IRQVSCG 173
Query: 253 AAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
A H V ++DDG +L +WG G LG G T + A ++
Sbjct: 174 AVHVVALSDDG-QLQAWGYNEYGQLGRGVTSEGLQGARII 212
>gi|449447436|ref|XP_004141474.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
2 [Cucumis sativus]
Length = 472
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 131/287 (45%), Gaps = 53/287 (18%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
LW+WG + + +FTP + + +V+CG+ HVVAL G+
Sbjct: 142 LWIWGQ----NQGSNFPRLFWGAFTPQTI-------IRQVSCGAVHVVALSDDGQLQ--- 187
Query: 83 DLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQ---DSP--WAVYEVTCGSFHTALLT 136
+WG N GQLG G L+ +II F + ++P + +V+CG +H+A ++
Sbjct: 188 -----AWGYNEYGQLGRGVTSEGLQGARIINAFAKFLDEAPELVTITKVSCGEYHSAAIS 242
Query: 137 HRKRPNDMLESMCWTFGLGENGQLGHGTTQSA---LVPEQVKELPQYVYLVSVDCGLFHT 193
+T+GLG GQLGH + QSA L+P +V L + + + CG HT
Sbjct: 243 ENGE--------VYTWGLGSMGQLGHCSLQSADKELIPRRVVALDG-ICVKDIACGGVHT 293
Query: 194 SVVSSAGDVWSWGMEKGLGLC--PNASLTRNEAGDAIS-----PILISGNGPHGPKFQDP 246
++ G +++WG + L P AGD+ + P+++ +G
Sbjct: 294 CAITQNGSLYAWGGGQVGQLGVGPQTGFFSCIAGDSETFLRNLPVVVVSDGVQ------- 346
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
VACG +HT++ T DG ++ WG G K+ + P+ V W
Sbjct: 347 -HVACGHSHTLVSTKDG-RIHGWGYNSYGQAANEKSTYAWYPSPVDW 391
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 104/264 (39%), Gaps = 75/264 (28%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ +ACG EH A+ S G + +WGAN+ GQLG G E PK + NQ
Sbjct: 63 LDIACGREHTAAVASDGSLF--------TWGANDFGQLGDGTEEKSKLPKKV---NQLQG 111
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMC-----------------W------------ 150
V V+CG+ TA + R ND S C W
Sbjct: 112 EFVKSVSCGAHCTAAIA-EPRENDGTLSTCRLWIWGQNQGSNFPRLFWGAFTPQTIIRQV 170
Query: 151 -----------------TFGLGENGQLGHGTTQSALVPEQV--------KELPQYVYLVS 185
+G E GQLG G T L ++ E P+ V +
Sbjct: 171 SCGAVHVVALSDDGQLQAWGYNEYGQLGRGVTSEGLQGARIINAFAKFLDEAPELVTITK 230
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
V CG +H++ +S G+V++WG+ +G + SL A + P + G +D
Sbjct: 231 VSCGEYHSAAISENGEVYTWGL-GSMGQLGHCSL--QSADKELIPRRVV--ALDGICVKD 285
Query: 246 PVQVACGAAHTVLVTDDGYKLWSW 269
+ACG HT +T +G L++W
Sbjct: 286 ---IACGGVHTCAITQNG-SLYAW 305
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 100/220 (45%), Gaps = 43/220 (19%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAV----YEVTCGSFHTALLTHRKRP 141
Y WG N +GQ G ++ +LR P+ + P + ++ CG HTA +
Sbjct: 22 YVWGYNQSGQTGRKGKDHQLRVPRQLHPDLFGCPGEINSRWLDIACGREHTAAVAS---- 77
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS---- 197
+ +T+G + GQLG GT + + +P++V +L Q ++ SV CG T+ ++
Sbjct: 78 ----DGSLFTWGANDFGQLGDGTEEKSKLPKKVNQL-QGEFVKSVSCGAHCTAAIAEPRE 132
Query: 198 -----SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACG 252
S +W WG +G ++ R G A +P I QV+CG
Sbjct: 133 NDGTLSTCRLWIWGQNQG------SNFPRLFWG-AFTPQTI------------IRQVSCG 173
Query: 253 AAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
A H V ++DDG +L +WG G LG G T + A ++
Sbjct: 174 AVHVVALSDDG-QLQAWGYNEYGQLGRGVTSEGLQGARII 212
>gi|23503098|sp|Q92834.2|RPGR_HUMAN RecName: Full=X-linked retinitis pigmentosa GTPase regulator;
Flags: Precursor
gi|119579846|gb|EAW59442.1| retinitis pigmentosa GTPase regulator, isoform CRA_b [Homo sapiens]
Length = 1020
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 127/278 (45%), Gaps = 50/278 (17%)
Query: 10 GGMMSLAIDNAGALWM-----WGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
G S + L+M WG L G S +S P+ V V AC
Sbjct: 43 GDEHSAVVTGNNKLYMFGSNNWGQLGL------GSKSAISK--PTCVKALKPEKVKLAAC 94
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G H + G Y+ G NN GQLGLGD E R +I F S + +
Sbjct: 95 GRNHTLVSTEGGN--------VYATGGNNEGQLGLGDTEERNTFHVISFFT--SEHKIKQ 144
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
++ GS +A LT R + +G GQ+G + VP+QV + + V +
Sbjct: 145 LSAGSNTSAALTEDGR--------LFMWGDNSEGQIGLKNVSNVCVPQQVT-IGKPVSWI 195
Query: 185 SVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
S CG +H++ V++ G+++ +G E G LGL PN L G+ +P L+S P
Sbjct: 196 S--CGYYHSAFVTTDGELYVFGEPENGKLGL-PNQLL-----GNHRTPQLVS----EIP- 242
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ +QVACG HTV++T++ ++++G G+ G LG G
Sbjct: 243 -EKVIQVACGGEHTVVLTENA--VYTFGLGQFGQLGLG 277
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 126/291 (43%), Gaps = 52/291 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ S + G + + +N G L L D+ F ++S FT H + +++
Sbjct: 100 LVSTEGGNVYATGGNNEGQLG------LGDTEERNTFHVISFFTSE-------HKIKQLS 146
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS AL ED + WG N+ GQ+GL + + P+ + T + W
Sbjct: 147 AGSNTSAALT--------EDGRLFMWGDNSEGQIGLKNVSNVCVPQQV-TIGKPVSW--- 194
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG--HGTTQSALVPEQVKELPQYV 181
++CG +H+A +T + + FG ENG+LG + + P+ V E+P+ V
Sbjct: 195 -ISCGYYHSAFVT--------TDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSEIPEKV 245
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG HT VV + V+++G+ + L L I I
Sbjct: 246 --IQVACGGEHT-VVLTENAVYTFGLGQFGQLGLGTFLFETSEPKVIENI---------- 292
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG--KTIDFFAPAI 290
+ Q ++CG HT L+TD G ++++G GR G LG G + F P +
Sbjct: 293 RDQTISYISCGENHTALITDIGL-MYTFGDGRHGKLGLGLENFTNHFIPTL 342
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 42/222 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF-TPSPVWDFHGHTVVK 61
+I + AG S A+ G L+MWG+ +S + G VS+ P V G V
Sbjct: 141 KIKQLSAGSNTSAALTEDGRLFMWGD----NSEGQIGLKNVSNVCVPQQVT--IGKPVSW 194
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR--ESRLRPKIIETFNQDSP 119
++CG H + + GE Y +G NG+LGL ++ + P+++ P
Sbjct: 195 ISCGYYHSAFVTTDGE--------LYVFGEPENGKLGLPNQLLGNHRTPQLVSEI----P 242
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT----TQSALVPEQVK 175
V +V CG HT +LT E+ +TFGLG+ GQLG GT T V E ++
Sbjct: 243 EKVIQVACGGEHTVVLT---------ENAVYTFGLGQFGQLGLGTFLFETSEPKVIENIR 293
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGL 213
+ Q + +S CG HT++++ G ++++G + GLGL
Sbjct: 294 D--QTISYIS--CGENHTALITDIGLMYTFGDGRHGKLGLGL 331
>gi|301755904|ref|XP_002913788.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
1 [Ailuropoda melanoleuca]
gi|281346973|gb|EFB22557.1| hypothetical protein PANDA_001627 [Ailuropoda melanoleuca]
Length = 1057
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCKKQASPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ +
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLRTQK---I 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 245 VYICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 134/305 (43%), Gaps = 52/305 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCKKQASPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RTQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL-- 292
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGN 344
Query: 293 WPPLT 297
W P T
Sbjct: 345 WFPYT 349
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|73952755|ref|XP_536367.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
[Canis lupus familiaris]
Length = 1049
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCKKQASPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ +
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLRTQK---I 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 245 VYICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCKKQASPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RTQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|55832766|gb|AAV66896.1| truncated HERC6 [Homo sapiens]
Length = 364
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 115/246 (46%), Gaps = 31/246 (12%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRL 106
P P+ V V+CG EH +A+ G ++WGA + GQLG+G+ +E
Sbjct: 66 PEPIQALETLIVDLVSCGKEHSLAVCHKGRV--------FAWGAGSEGQLGIGEFKEISF 117
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT- 165
PK I T N + +V+CG +H+ L+ +S +++G +GQLG G
Sbjct: 118 TPKKIMTLND---IKIIQVSCGHYHSLALSK--------DSQVFSWGKNSHGQLGLGKEF 166
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
S P++V+ L + + L V G H+ +S G + WG L + RN
Sbjct: 167 PSQASPQRVRSL-EGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSG---RNVPV 222
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ P+ + K V ++CG AHT ++T DG K++++G RSG LG T +
Sbjct: 223 QSNKPLSVG-----ALKNLGVVYISCGDAHTAVLTQDG-KVFTFGDNRSGQLGYSPTPEK 276
Query: 286 FAPAIV 291
P +V
Sbjct: 277 RGPQLV 282
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 123/286 (43%), Gaps = 66/286 (23%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHTVVKV 62
V G SLA+ + G ++ WG + +EG + SFTP + + +++V
Sbjct: 80 VSCGKEHSLAVCHKGRVFAWG------AGSEGQLGIGEFKEISFTPKKIMTLNDIKIIQV 133
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWA 121
+CG H +AL +D +SWG N++GQLGLG S+ P+ + + + P A
Sbjct: 134 SCGHYHSLAL--------SKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSL-EGIPLA 184
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWT-FGLGEN--GQL---GHGTTQSALVPEQVK 175
+V G H+ L S+C T FG G N GQL G + P V
Sbjct: 185 --QVAAGGAHSFAL-----------SLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVG 231
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILI 233
L + + +V + CG HT+V++ G V+++G + LG P
Sbjct: 232 AL-KNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPE--------------- 275
Query: 234 SGNGPHGPKFQDPV-----QVACGAAHTVLVTDDGYKLWSWGRGRS 274
GP+ + + Q+ CG+ HT+ ++ S+G G S
Sbjct: 276 ----KRGPQLVERIDGLVSQIDCGSYHTLAYVHTTGQVVSFGHGPS 317
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 12/134 (8%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ G + WG+ + G V S P V VV ++
Sbjct: 183 LAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYIS 242
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H L G+ +++G N +GQLG + P+++E + V
Sbjct: 243 CGDAHTAVLTQDGKV--------FTFGDNRSGQLGYSPTPEKRGPQLVERID----GLVS 290
Query: 124 EVTCGSFHTALLTH 137
++ CGS+HT H
Sbjct: 291 QIDCGSYHTLAYVH 304
>gi|119626423|gb|EAX06018.1| hect domain and RLD 6, isoform CRA_a [Homo sapiens]
Length = 385
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 115/246 (46%), Gaps = 31/246 (12%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRL 106
P P+ V V+CG EH +A+ G ++WGA + GQLG+G+ +E
Sbjct: 66 PEPIQALETLIVDLVSCGKEHSLAVCHKGRV--------FAWGAGSEGQLGIGEFKEISF 117
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT- 165
PK I T N + +V+CG +H+ L+ +S +++G +GQLG G
Sbjct: 118 TPKKIMTLND---IKIIQVSCGHYHSLALSK--------DSQVFSWGKNSHGQLGLGKEF 166
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
S P++V+ L + + L V G H+ +S G + WG L + RN
Sbjct: 167 PSQASPQRVRSL-EGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSG---RNVPV 222
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ P+ + K V ++CG AHT ++T DG K++++G RSG LG T +
Sbjct: 223 QSNKPLSVG-----ALKNLGVVYISCGDAHTAVLTQDG-KVFTFGDNRSGQLGYSPTPEK 276
Query: 286 FAPAIV 291
P +V
Sbjct: 277 RGPQLV 282
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 123/286 (43%), Gaps = 66/286 (23%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHTVVKV 62
V G SLA+ + G ++ WG + +EG + SFTP + + +++V
Sbjct: 80 VSCGKEHSLAVCHKGRVFAWG------AGSEGQLGIGEFKEISFTPKKIMTLNDIKIIQV 133
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWA 121
+CG H +AL +D +SWG N++GQLGLG S+ P+ + + + P A
Sbjct: 134 SCGHYHSLAL--------SKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSL-EGIPLA 184
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWT-FGLGEN--GQL---GHGTTQSALVPEQVK 175
+V G H+ L S+C T FG G N GQL G + P V
Sbjct: 185 --QVAAGGAHSFAL-----------SLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVG 231
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILI 233
L + + +V + CG HT+V++ G V+++G + LG P
Sbjct: 232 AL-KNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPE--------------- 275
Query: 234 SGNGPHGPKFQDPV-----QVACGAAHTVLVTDDGYKLWSWGRGRS 274
GP+ + + Q+ CG+ HT+ ++ S+G G S
Sbjct: 276 ----KRGPQLVERIDGLVSQIDCGSYHTLAYVHTTGQVVSFGHGPS 317
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 12/134 (8%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ G + WG+ + G V S P V VV ++
Sbjct: 183 LAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYIS 242
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H L G+ +++G N +GQLG + P+++E + V
Sbjct: 243 CGDAHTAVLTQDGKV--------FTFGDNRSGQLGYSPTPEKRGPQLVERID----GLVS 290
Query: 124 EVTCGSFHTALLTH 137
++ CGS+HT H
Sbjct: 291 QIDCGSYHTLAYVH 304
>gi|410918052|ref|XP_003972500.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
ligase HERC3-like [Takifugu rubripes]
Length = 1031
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 115/265 (43%), Gaps = 37/265 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL----VSSFTPSPVWDFHGHT 58
+I V G +A+ G L+ WG +T G L S P P+ G
Sbjct: 137 RIAQVMCGNQHCIALSKDGQLFTWGQ------NTSGQLGLGKGEPSKLFPQPLKSLAGIP 190
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ K+ G +H AL +G + WG N GQLGL D + R P I+
Sbjct: 191 LAKITAGGDHSFALSLSG--------AVFGWGKNKAGQLGLNDIQDRAVPCHIKFLRSQK 242
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V ++CG HTA LT + +TFG G GQLGHG+T + L+P +V EL
Sbjct: 243 ---VVHISCGEEHTAALTK--------DGGLFTFGDGSWGQLGHGSTANELLPRRVLEL- 290
Query: 179 QYVYLVSVDCGLFHT-SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ + CG HT + S+G V+++G G L+ +++ + +SG+
Sbjct: 291 MGTEVSQITCGRHHTLAFAPSSGGVYAFGCNSH-GQLGTGVLSADKSPYPLKTSFLSGS- 348
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDD 262
HG ++ CG H+ L+ +
Sbjct: 349 IHGTV----TKITCGGDHSFLLYSN 369
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 112/251 (44%), Gaps = 40/251 (15%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
TP V + V+CG H +A+ G+ + +WGA GQLGLG E+ +
Sbjct: 73 TPEFVGALDTQKITLVSCGQAHSLAVNEQGQVF--------AWGAGEEGQLGLGTTETAV 124
Query: 107 R-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
R P++I+ + +V CG+ H L+ + +T+G +GQLG G
Sbjct: 125 RIPRLIKRLCDHR---IAQVMCGNQHCIALSK--------DGQLFTWGQNTSGQLGLGKG 173
Query: 166 Q-SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA 224
+ S L P+ +K L + L + G H+ +S +G V+ WG K L N+
Sbjct: 174 EPSKLFPQPLKSLAG-IPLAKITAGGDHSFALSLSGAVFGWGKNKA------GQLGLNDI 226
Query: 225 GDAISPILISGNGPHGPKF---QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
D P I KF Q V ++CG HT +T DG L+++G G G LG G
Sbjct: 227 QDRAVPCHI--------KFLRSQKVVHISCGEEHTAALTKDG-GLFTFGDGSWGQLGHGS 277
Query: 282 TIDFFAPAIVL 292
T + P VL
Sbjct: 278 TANELLPRRVL 288
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 126/291 (43%), Gaps = 58/291 (19%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT----PSPVWDFHGHT 58
+I V G SLA++ G ++ WG + EG L ++ T P + H
Sbjct: 84 KITLVSCGQAHSLAVNEQGQVFAWG------AGEEGQLGLGTTETAVRIPRLIKRLCDHR 137
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE-SRLRPKIIETFNQD 117
+ +V CG++H +AL G+ ++WG N +GQLGLG E S+L P+ +++
Sbjct: 138 IAQVMCGNQHCIALSKDGQ--------LFTWGQNTSGQLGLGKGEPSKLFPQPLKSL-AG 188
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A ++T G H+ L+ L + +G + GQLG Q VP +K L
Sbjct: 189 IPLA--KITAGGDHSFALS--------LSGAVFGWGKNKAGQLGLNDIQDRAVPCHIKFL 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVW-----SWGMEKGLGLCPNASLTRNE---AGDAIS 229
+ +V + CG HT+ ++ G ++ SWG + G G N L R G +S
Sbjct: 239 -RSQKVVHISCGEEHTAALTKDGGLFTFGDGSWG-QLGHGSTANELLPRRVLELMGTEVS 296
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
Q+ CG HT+ ++++G G LGTG
Sbjct: 297 ------------------QITCGRHHTLAFAPSSGGVYAFGCNSHGQLGTG 329
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 89/197 (45%), Gaps = 32/197 (16%)
Query: 89 WGANNNGQLGLG-DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLES 147
WG +GQLG+G +R P+ F + + E+ CG H+ L H +
Sbjct: 4 WGKAKDGQLGIGVERNPMFEPRNCNVF---TGRGLKEIVCGGQHSVFLLH--------DG 52
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVKEL-PQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G GQLGH + + PE V L Q + LVS CG H+ V+ G V++WG
Sbjct: 53 SVYTCGSNSCGQLGH--NKPGITPEFVGALDTQKITLVS--CGQAHSLAVNEQGQVFAWG 108
Query: 207 M--EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
E LGL + R P LI H QV CG H + ++ DG
Sbjct: 109 AGEEGQLGLGTTETAVR-------IPRLIKRLCDH-----RIAQVMCGNQHCIALSKDG- 155
Query: 265 KLWSWGRGRSGVLGTGK 281
+L++WG+ SG LG GK
Sbjct: 156 QLFTWGQNTSGQLGLGK 172
>gi|326677630|ref|XP_003200872.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Danio
rerio]
Length = 4647
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 127/283 (44%), Gaps = 38/283 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
M ++ S K +LA+ G ++ WG+ D G G S + G V
Sbjct: 455 MRKVSSSKGSDGHTLAVTAEGEVFSWGDG---DYGKLGHGNSATQKYPKIIQGPLLGKVV 511
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V+ G H A+ + GE Y+WG + G+LG D SR P +++ +
Sbjct: 512 VCVSAGYRHSAAVTNDGE--------LYTWGEGDFGRLGHSDSHSRNVPTLVKDIS---- 559
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS HT + R + W+FG G+NG+LGHG T P+ ++ L
Sbjct: 560 -GVGQVACGSSHTIAVAQDGR-------IVWSFGGGDNGKLGHGDTNRVYRPKVIEALHG 611
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
++ + V G + ++SAG V++WG LG C ++ T ++ P LI
Sbjct: 612 FI-IRKVCAGSQSSLALTSAGQVFAWGCGSCLG-CGSSETT------SLRPRLI-----E 658
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+ ++CG +H + ++ + ++++WG G G G T
Sbjct: 659 ELSITKIIDISCGDSHCLALSHEN-EVFAWGNNAMGQCGQGHT 700
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 27/205 (13%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ PK + + V HT +T E
Sbjct: 426 GKGSYGRLGLGDSNNQSMPKKLVLEPPRTMRKVSSSKGSDGHTLAVT--------AEGEV 477
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHG + + P+ ++ +V V G H++ V++ G++++WG
Sbjct: 478 FSWGDGDYGKLGHGNSATQKYPKIIQGPLLGKVVVCVSAGYRHSAAVTNDGELYTWGEGD 537
Query: 210 GLGLCPNASLTRNEAGDAISPIL---ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L + S +RN P L ISG G QVACG++HT+ V DG +
Sbjct: 538 FGRLGHSDSHSRN------VPTLVKDISGVG----------QVACGSSHTIAVAQDGRIV 581
Query: 267 WSWGRGRSGVLGTGKTIDFFAPAIV 291
WS+G G +G LG G T + P ++
Sbjct: 582 WSFGGGDNGKLGHGDTNRVYRPKVI 606
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 52/201 (25%)
Query: 46 FTPSPVWDFHGHTVVKVAC--GSE-HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+TP+ + G+ V ++ GS+ H +AL GE + SWG + G+LG G+
Sbjct: 3931 YTPTIISALQGYVVTQLVTSYGSDGHSLALTETGEVF--------SWGDGDYGKLGHGNS 3982
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
E + RPK IE + V ++ CG H+A++T + +TFG G++G+LG
Sbjct: 3983 ERQRRPKQIEGLQGEE---VVQLACGFKHSAVVT--------ADGKLFTFGSGDSGRLGQ 4031
Query: 163 GTTQSALVPEQVKEL----------------------PQY------VYLVSVDCGLFHTS 194
+T + ++PE+V L PQ V++ + G H
Sbjct: 4032 RSTSNKMIPERVTALDGHHIGQRLIGLPDAMLKNHNRPQIIPALEGVFIEDIAVGCEHIL 4091
Query: 195 VVSSAGDVWSWG--MEKGLGL 213
+S+ GDV++WG E LGL
Sbjct: 4092 ALSNTGDVYAWGCNCEAQLGL 4112
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 86/207 (41%), Gaps = 28/207 (13%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y WG +GQL + + P + + +Q +V CG T L+
Sbjct: 3863 YLWGNGRHGQLADAGTSASV-PTLAPSLSQ-----TQQVVCGQNCTFLV--------QAN 3908
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY--LVSVDCGLFHTSVVSSAGDVWS 204
G G G+LG G + P + L YV LV+ H+ ++ G+V+S
Sbjct: 3909 GTVLAVGEGSYGRLGQGNSDDLYTPTIISALQGYVVTQLVTSYGSDGHSLALTETGEVFS 3968
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG + G + + R I G + ++ VQ+ACG H+ +VT DG
Sbjct: 3969 WG-DGDYGKLGHGNSERQRRPKQI----------EGLQGEEVVQLACGFKHSAVVTADG- 4016
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
KL+++G G SG LG T + P V
Sbjct: 4017 KLFTFGSGDSGRLGQRSTSNKMIPERV 4043
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P + G + +A G EH++AL + G+ Y +WG N QLGLG
Sbjct: 4069 PQIIPALEGVFIEDIAVGCEHILALSNTGDVY--------AWGCNCEAQLGLGHSNPVKE 4120
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTA 133
P ++ T + + +++ G H++
Sbjct: 4121 PILVTTLQGKN---IRQISAGRCHSS 4143
>gi|73952739|ref|XP_849808.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
[Canis lupus familiaris]
Length = 1057
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCKKQASPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ +
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLRTQK---I 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 245 VYICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCKKQASPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RTQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|301755906|ref|XP_002913789.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
2 [Ailuropoda melanoleuca]
Length = 1049
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCKKQASPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ +
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLRTQK---I 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 245 VYICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 134/305 (43%), Gaps = 52/305 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCKKQASPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RTQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL-- 292
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGN 344
Query: 293 WPPLT 297
W P T
Sbjct: 345 WFPYT 349
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|224053260|ref|XP_002297742.1| predicted protein [Populus trichocarpa]
gi|222845000|gb|EEE82547.1| predicted protein [Populus trichocarpa]
Length = 1063
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 130/297 (43%), Gaps = 44/297 (14%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-------DFHGHTV 59
V G +S A+ +G L++WG F L+ + + W G V
Sbjct: 328 VACGEYLSCAVTLSGDLYIWGGNAY-------NFGLLGCGSEATQWVPRKLSGPLEGIHV 380
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V+CG H + SAG+ +++G G LG GDR S P+ +E+
Sbjct: 381 SSVSCGPWHTAVVTSAGQ--------LFTFGDGTFGVLGHGDRSSVSTPREVESLKG--- 429
Query: 120 WAVYEVTCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V CG +HTA ++ ++ +T+G G+ G+LGHG ++ LVP V
Sbjct: 430 LRTMRVACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGDKEARLVPTYVA 489
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L + + V CG T ++++G V++ G P N D P + G
Sbjct: 490 TLVEPSF-CQVACGHSLTVALTTSGQVYTMG-------SPVYGQLGNPQADGKVPTRVEG 541
Query: 236 NGPHGPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ V+ +ACGA H ++T ++++WG+G +G LG G T D P+IV
Sbjct: 542 K-----LMKNFVEELACGAYHVAVLTSR-TEVYTWGKGANGRLGHGDTDDRNFPSIV 592
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 37/217 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
+ SV G + + +AG L+ +G +G F ++ S TP V G
Sbjct: 379 HVSSVSCGPWHTAVVTSAGQLFTFG---------DGTFGVLGHGDRSSVSTPREVESLKG 429
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLV-------CYSWGANNNGQLGLGDRESRLRPK 109
++VACG H A+V E G ++WG + G+LG GD+E+RL P
Sbjct: 430 LRTMRVACGVWHTAAVV---EVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGDKEARLVPT 486
Query: 110 IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
+ T + S +V CG T LT +T G GQLG+
Sbjct: 487 YVATLVEPS---FCQVACGHSLTVALT--------TSGQVYTMGSPVYGQLGNPQADGK- 534
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
VP +V+ ++ + CG +H +V++S +V++WG
Sbjct: 535 VPTRVEGKLMKNFVEELACGAYHVAVLTSRTEVYTWG 571
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 107/262 (40%), Gaps = 43/262 (16%)
Query: 43 VSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ SF P + V +ACG +H + GE + SWG G+LG G
Sbjct: 257 MDSFVPKALESAVLLDVQAIACGRQHAALVTKQGEVF--------SWGEELGGRLGHGVD 308
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML--ESMCWTFGLGENGQL 160
PK ++ + V V CG + + +T D+ + FGL L
Sbjct: 309 SDVSHPKFVDGLKN---FNVELVACGEYLSCAVT---LSGDLYIWGGNAYNFGL-----L 357
Query: 161 GHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
G G+ + VP ++ + +++ SV CG +HT+VV+SAG ++++G + G+ L
Sbjct: 358 GCGSEATQWVPRKLSGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFG-DGTFGV-----LG 411
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSW 269
+ +P + K ++VACG HT V + KL++W
Sbjct: 412 HGDRSSVSTPREV-----ESLKGLRTMRVACGVWHTAAVVEVMVGSSSSSNCSSGKLFTW 466
Query: 270 GRGRSGVLGTGKTIDFFAPAIV 291
G G G LG G P V
Sbjct: 467 GDGDKGRLGHGDKEARLVPTYV 488
>gi|224011731|ref|XP_002295640.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209583671|gb|ACI64357.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 277
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 116/233 (49%), Gaps = 27/233 (11%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
+SWG +GQLG+GD + P ++ + VTCGS+HTA + D+
Sbjct: 2 FSWGRGEDGQLGIGDTSDQDEPTYVDALR--GVGIITHVTCGSYHTAAVA---SNGDL-- 54
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T+G G G+LGHG P +V+ L + +V + CG HT+VV+S G +++WG
Sbjct: 55 ---YTWGGGMYGKLGHGNESGHSTPRRVEALVG-LSIVDIACGSRHTAVVTSKGCLYTWG 110
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISG-NGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
+K G+ + + G +P L+ NG + VQ++ HT +TDD ++
Sbjct: 111 -DKENGVAGHG----DTEGHQYTPKLLERLNG------KKVVQLSACGFHTACLTDD-HE 158
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKD 318
++WG G+ G LG G + +P ++ L ++ ++ GG + T+D
Sbjct: 159 TFAWGEGKFGRLGNGTERNCHSPRLI--ESLIGKYPC-QVACGGFHSAVITRD 208
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 31/233 (13%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ V CGS H A+ S G+ Y +WG G+LG G+ P+ +E
Sbjct: 35 ITHVTCGSYHTAAVASNGDLY--------TWGGGMYGKLGHGNESGHSTPRRVEAL---V 83
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
++ ++ CGS HTA++T + +T+G ENG GHG T+ ++ E
Sbjct: 84 GLSIVDIACGSRHTAVVTSK--------GCLYTWGDKENGVAGHGDTEGHQYTPKLLERL 135
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+V + FHT+ ++ + ++WG K G N + RN + LI
Sbjct: 136 NGKKVVQLSACGFHTACLTDDHETFAWGEGK-FGRLGNGT-ERNCHSPRLIESLIG---- 189
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ P QVACG H+ ++T DG K++++G G G LG ++ P +V
Sbjct: 190 -----KYPCQVACGGFHSAVITRDG-KMYTFGGGEHGQLGHADKVNKLKPTLV 236
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 119/266 (44%), Gaps = 45/266 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPD--SSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
I V G + A+ + G L+ WG E G S TP V G ++V
Sbjct: 35 ITHVTCGSYHTAAVASNGDLYTWGGGMYGKLGHGNESGHS-----TPRRVEALVGLSIVD 89
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES-RLRPKIIETFNQDSPW 120
+ACGS H + S G Y+WG NG G GD E + PK++E N
Sbjct: 90 IACGSRHTAVVTSKG--------CLYTWGDKENGVAGHGDTEGHQYTPKLLERLNGKK-- 139
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V +++ FHTA LT D E+ W G G+ G+LG+GT ++ P ++ L
Sbjct: 140 -VVQLSACGFHTACLT------DDHETFAW--GEGKFGRLGNGTERNCHSPRLIESLIGK 190
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
Y V CG FH++V++ G ++++G + + L + + + P L+
Sbjct: 191 -YPCQVACGGFHSAVITRDGKMYTFGGGE------HGQLGHADKVNKLKPTLV------- 236
Query: 241 PKFQDPV---QVACGAAHTVLVTDDG 263
+ D V Q+ CG +H+V +T +G
Sbjct: 237 -EALDGVVVKQITCGWSHSVALTSEG 261
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 28/201 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I + G + + + G L+ WG N TEG +TP + +G VV
Sbjct: 87 IVDIACGSRHTAVVTSKGCLYTWGDKENGVAGHGDTEG-----HQYTPKLLERLNGKKVV 141
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+++ H L ET+ +WG G+LG G + P++IE+ P
Sbjct: 142 QLSACGFHTACLTDDHETF--------AWGEGKFGRLGNGTERNCHSPRLIESLIGKYPC 193
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+V CG FH+A++T R M +TFG GE+GQLGH + L P V+ L
Sbjct: 194 ---QVACGGFHSAVIT---RDGKM-----YTFGGGEHGQLGHADKVNKLKPTLVEALDG- 241
Query: 181 VYLVSVDCGLFHTSVVSSAGD 201
V + + CG H+ ++S G+
Sbjct: 242 VVVKQITCGWSHSVALTSEGE 262
>gi|148700104|gb|EDL32051.1| hect domain and RLD 4, isoform CRA_a [Mus musculus]
Length = 546
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCQKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSGAI--------FGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ V CG HTS V S+G ++S+G+ N L + SP + GN
Sbjct: 296 VTQVACGRQHTSAFVPSSGRIYSFGLGG------NGQLGTGSTSNRKSPFTVKGN 344
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 130/297 (43%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L S P + +
Sbjct: 86 IVAVACGEAHTLALNDKGQVYAWG------LDSDGQLGLQGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCQKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ QVACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 104/252 (41%), Gaps = 68/252 (26%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTAL------------ 134
WG + GQLGLG D E L P+ + F V +V CG HT
Sbjct: 4 WGNASYGQLGLGGIDEEIVLEPRRSDFFVNKK---VRDVGCGLRHTVFVLDDGTVYTCGC 60
Query: 135 -----LTH---RKRPNDML----------------------ESMCWTFGLGENGQLG-HG 163
L H RK+P ++ + + +GL +GQLG G
Sbjct: 61 NDLGQLGHEKSRKKPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQLGLQG 120
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASL 219
+ + VP +K L + +V V CG +H+ +S A +V+ WG K GLG+
Sbjct: 121 SEECIRVPRNIKSLSD-IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGI------ 173
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
+ SP LI G F +QVA G AH+ ++T G ++ WGR + G LG
Sbjct: 174 ---DCQKQTSPQLI--KSLLGIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGL 224
Query: 280 GKTIDFFAPAIV 291
D + P ++
Sbjct: 225 NDENDRYVPNLL 236
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E + + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASYGQLGLGGIDEEIVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V VACG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVACGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|55727310|emb|CAH90411.1| hypothetical protein [Pongo abelii]
Length = 975
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 138/297 (46%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIIHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+++V+CG+ H +AL S G+ + +WG N++GQLGLG + S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALASDGQFF--------TWGKNSHGQLGLGKEFPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGAGS------YGQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 107/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG RE +I +Q
Sbjct: 35 SVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLG-HVREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IIHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H ++S G ++WG + GLG AS R + + I P
Sbjct: 134 LNQQT-ILQVSCGNWHCLALASDGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEKDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSYGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|338723767|ref|XP_001496703.3| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Equus
caballus]
Length = 1050
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 139/297 (46%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G +LA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIVHVACGESHNLALSDRGQLFSWG------AGSDGQLGLMTTEDAVAVPRVIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG S+ P+ + + +
Sbjct: 139 ILQVSCGNWHSLALAADGQFF--------TWGKNSHGQLGLGKEFPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEEDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL-VPEQVKE 176
+ V CG H L+ R + +++G G +GQLG TT+ A+ VP +++
Sbjct: 86 ----IVHVACGESHNLALSDRGQ--------LFSWGAGSDGQLGLMTTEDAVAVPRVIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H+ +++ G ++WG + GLG AS R + + I P
Sbjct: 134 LNQQT-ILQVSCGNWHSLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEEDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 76/221 (34%), Gaps = 66/221 (29%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF----TPSPVWDFHGHTV 59
I V G SLA+ G + WG ++ G L F +P V G +
Sbjct: 139 ILQVSCGNWHSLALAADGQFFTWGK------NSHGQLGLGKEFPSQASPQRVRSLEGIPL 192
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+VA G H AL +G + WG NN GQLGL D E R P ++
Sbjct: 193 AQVAAGGAHSFALSLSGAVF--------GWGMNNAGQLGLSDEEDRESPCHVKLLRTQK- 243
Query: 120 WAVYEVTCGSFHTALLTH----------------------RKRPNDMLESM--------- 148
V ++CG HTA+LT P +LE M
Sbjct: 244 --VVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIAC 301
Query: 149 --------------CWTFGLGENGQLGHGTTQSALVPEQVK 175
+ FG G GQLG G T + P VK
Sbjct: 302 GRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|395834129|ref|XP_003790065.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Otolemur
garnettii]
Length = 1050
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 137/297 (46%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L ++ P + + T
Sbjct: 85 HIIHVACGESHSLALSDRGQLFSWG------AGSDGQLGLTTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLGLSDEKDRESPCHVK-L 238
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ G V+++G G C L + D ++P + +
Sbjct: 239 LRTQKVVYISCGEEHTAVLTKNGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 116/278 (41%), Gaps = 66/278 (23%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SVKEVACGGNHSVFLLEGGEVY--------TCGLNTKGQLG-HEREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IIHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLTTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q ++ V CG +H +++ G ++WG + GLG AS R + + I
Sbjct: 134 LNQQT-ILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192
Query: 231 ILISGNGPH-------GPKF-----------------------------QDPVQVACGAA 254
++ G H G F Q V ++CG
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEE 252
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
HT ++T +G ++++G G G LG D P VL
Sbjct: 253 HTAVLTKNG-GVFTFGAGSCGQLGHDSMNDEVNPRRVL 289
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKNGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|356567509|ref|XP_003551961.1| PREDICTED: uncharacterized protein LOC100791947 [Glycine max]
Length = 1106
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 132/290 (45%), Gaps = 31/290 (10%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ +G L+ WG+ + G + VS + P V G V ++CG
Sbjct: 369 VACGEYHTCAVTLSGDLYTWGDGTY-NYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCG 427
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + S+G+ +++G G LG GDR+S P+ IE+ +
Sbjct: 428 PWHTAVVTSSGQ--------LFTFGDGTFGALGHGDRKSVSLPREIESLKG---LRTVQA 476
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ G+LGHG +S LVP V L +
Sbjct: 477 ACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTCVVTLVEPN 536
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V CG T +S +G V++ +G C L +A D PI + G
Sbjct: 537 --CQVACGHSMTVALSRSGHVYT------MGSCVYGQLGNTQA-DGKLPIRVEGK--LSK 585
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F + ++ACGA H ++T ++++WG+G +G LG G T D P +V
Sbjct: 586 SFVE--EIACGAYHVAVLTSR-TEVFTWGKGANGRLGHGDTNDRNTPTLV 632
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 47/249 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +ACG +H + GE + SWG + G+LG G PK+IE+ + +
Sbjct: 314 VQNIACGGKHAALVTKQGEVF--------SWGEESGGRLGHGVDSDVPHPKLIESLSNTN 365
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG--ENGQLGHGTTQSALVPEQVKE 176
+ V CG +HT +T L +T+G G G LGHG S VP++V
Sbjct: 366 ---IELVACGEYHTCAVT--------LSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNG 414
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILIS 234
+ +++ S+ CG +HT+VV+S+G ++++ G LG S++ +++ +
Sbjct: 415 PLEGIHVSSISCGPWHTAVVTSSGQLFTFGDGTFGALGHGDRKSVSLPREIESLKGLRT- 473
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGKTI 283
VQ ACG HT V + KL++WG G G LG G
Sbjct: 474 ------------VQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKE 521
Query: 284 DFFAPAIVL 292
P V+
Sbjct: 522 SKLVPTCVV 530
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 107/261 (40%), Gaps = 31/261 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+ S+ G + + ++G L+ +G+ G S P + G V+
Sbjct: 420 HVSSISCGPWHTAVVTSSGQLFTFGDGTF---GALGHGDRKSVSLPREIESLKGLRTVQA 476
Query: 63 ACGSEHVVA----LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
ACG H A +V + ++WG + G+LG GD+ES+L P + T + +
Sbjct: 477 ACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTCVVTLVEPN 536
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+V CG T L+ +T G GQLG+ T +P +V+
Sbjct: 537 ----CQVACGHSMTVALSR--------SGHVYTMGSCVYGQLGN-TQADGKLPIRVEGKL 583
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
++ + CG +H +V++S +V++WG KG N L + D +P L+
Sbjct: 584 SKSFVEEIACGAYHVAVLTSRTEVFTWG--KG----ANGRLGHGDTNDRNTPTLV----- 632
Query: 239 HGPKFQDPVQVACGAAHTVLV 259
K + +ACG T +
Sbjct: 633 EALKDKQVKSIACGTNFTAAI 653
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G +L+P+ + E + + ++ CG H ++V+ G+V+SWG E G L
Sbjct: 295 GVKMDSLLPKAL-ESAVVLDVQNIACGGKHAALVTKQGEVFSWGEESG------GRLGHG 347
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTG 280
D P LI + VACG HT VT G L++WG G G+LG G
Sbjct: 348 VDSDVPHPKLIESLSNTNIEL-----VACGEYHTCAVTLSG-DLYTWGDGTYNYGLLGHG 401
Query: 281 KTIDFFAPAIVLWP 294
+ + P V P
Sbjct: 402 NQVSHWVPKRVNGP 415
>gi|221484866|gb|EEE23156.1| regulator of chromosome condensation domain-containing protein,
putative [Toxoplasma gondii GT1]
Length = 725
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 128/310 (41%), Gaps = 62/310 (20%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG----LGDRESRLR-- 107
G V ++ACG +HV A V T +GE Y WG GQ+G G R R
Sbjct: 411 LRGKRVTQIACG-KHVSAAV----TEEGE---LYVWGEGRGGQVGPPVPAGRRSEDRRKE 462
Query: 108 -----------------PKIIETF--------NQD-SPWAVYEVTCGSFHTALLTHRKRP 141
P+ +E + +QD +P V +V CGS H A LT
Sbjct: 463 VSTSTFPSSGLSFNVPTPRRLEVYGLAESEETSQDRTPKKVVQVACGSSHCAALTE---- 518
Query: 142 NDMLESMCWTFGLGENGQLGHGT-TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAG 200
+ +T+G + GQLG G ++ L+P +V L +VSV CG F T +S G
Sbjct: 519 ----DGEIYTWGSDDYGQLGLGKESRFVLLPRRVDALADK-RVVSVRCGHFFTCCTTSTG 573
Query: 201 DVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG-PHGPKFQDP--VQVACGAAHTV 257
+V+ WG + G C N DA P+LIS P G K + G H
Sbjct: 574 EVFVWGYGRD-GECGNGR------SDAALPVLISLEAQPGGKKHASGTVLDTVAGGGHLA 626
Query: 258 LVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTK 317
T +G LW WGRGR G LG G I+ A A P L EE ++
Sbjct: 627 ARTQEG-GLWMWGRGREGQLGRGDAIESVA-ASRDSPQLVEELWNRSPRGSQSRPSSDSR 684
Query: 318 DLEGAEERDE 327
L G +R+E
Sbjct: 685 ALTGLNDREE 694
>gi|159038540|ref|YP_001537793.1| chromosome condensation regulator RCC1 [Salinispora arenicola
CNS-205]
gi|157917375|gb|ABV98802.1| regulator of chromosome condensation RCC1 [Salinispora arenicola
CNS-205]
Length = 579
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 128/298 (42%), Gaps = 45/298 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
+ + ++ GG+ +LA+ +AG WG+ L D ST S TP V G T
Sbjct: 146 TTVTALSGGGVHNLAVTSAGTALAWGDNFWGQLGDGSTT------RSRTPVAVNVPAGTT 199
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ VA G H +A+ SAG +WG N++GQLG G P D
Sbjct: 200 ITAVAAGQGHSLAVTSAGT--------ALAWGDNSSGQLGDGTATDSSIP-----VAADV 246
Query: 119 PWA--VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
P + V G H+ LT + + W G +GQLG GTT S+ P V +
Sbjct: 247 PAGTTITAVAAGGLHSLALTSGG------DVLAW--GANGSGQLGDGTTTSSSTPVAV-D 297
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+P + +V G H+ V+SAGDV +WG + G + S T + +P+ + N
Sbjct: 298 VPAGTTVTAVAAGGRHSLAVTSAGDVLAWG-DNTAGQLGDGSTTHSS-----TPVAV--N 349
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
P G VA G+ H++ VT L +WG G LG G T P V P
Sbjct: 350 VPAGTTIT---AVATGSGHSLAVTSTDTAL-AWGDNTFGQLGDGSTTSSIIPVAVDLP 403
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 126/296 (42%), Gaps = 40/296 (13%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
+ I +V G SLA+ +AG WG+ L D G ++ SS TP V G T
Sbjct: 93 TTITAVAGGAGHSLAVTSAGTALAWGDNAFGQLGD-----GTTIPSSSTPVAVDVPAGTT 147
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V ++ G H +A+ SAG +WG N GQLG G S R + N +
Sbjct: 148 VTALSGGGVHNLAVTSAGT--------ALAWGDNFWGQLGDG---STTRSRTPVAVNVPA 196
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ V G H+ +T ++ W G +GQLG GT + +P ++P
Sbjct: 197 GTTITAVAAGQGHSLAVTSAG------TALAW--GDNSSGQLGDGTATDSSIPVA-ADVP 247
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V G H+ ++S GDV +WG G G + + T + +P+ + + P
Sbjct: 248 AGTTITAVAAGGLHSLALTSGGDVLAWG-ANGSGQLGDGTTTSSS-----TPVAV--DVP 299
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
G VA G H++ VT G L +WG +G LG G T P V P
Sbjct: 300 AGTTVT---AVAAGGRHSLAVTSAGDVL-AWGDNTAGQLGDGSTTHSSTPVAVNVP 351
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 89/205 (43%), Gaps = 29/205 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
+WG N+ G+LG G P + N + + V G+ H+ +T
Sbjct: 63 LAWGTNSAGRLGDGTTTDSSSPVSV---NVPAGTTITAVAGGAGHSLAVTSAG------T 113
Query: 147 SMCWTFGLGEN--GQLGHGTT-QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVW 203
++ W G+N GQLG GTT S+ P V ++P + ++ G H V+SAG
Sbjct: 114 ALAW----GDNAFGQLGDGTTIPSSSTPVAV-DVPAGTTVTALSGGGVHNLAVTSAGTAL 168
Query: 204 SWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
+WG + G + S TR+ +P+ + N P G VA G H++ VT G
Sbjct: 169 AWG-DNFWGQLGDGSTTRSR-----TPVAV--NVPAGTTIT---AVAAGQGHSLAVTSAG 217
Query: 264 YKLWSWGRGRSGVLGTGKTIDFFAP 288
L +WG SG LG G D P
Sbjct: 218 TAL-AWGDNSSGQLGDGTATDSSIP 241
>gi|297838741|ref|XP_002887252.1| hypothetical protein ARALYDRAFT_476103 [Arabidopsis lyrata subsp.
lyrata]
gi|297333093|gb|EFH63511.1| hypothetical protein ARALYDRAFT_476103 [Arabidopsis lyrata subsp.
lyrata]
Length = 1027
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 130/300 (43%), Gaps = 47/300 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTVV 60
S+ G + AI +G L+ WG N L E S + P V G V
Sbjct: 343 SLACGDFHTCAITQSGDLYSWGDGTHNVDLLGHGNES-----SCWIPKRVTGALQGLYVS 397
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VACG H + S+G+ +++G + G LG GDR S P+ ++ S
Sbjct: 398 YVACGPWHTAVVASSGQ--------LFTFGDGSFGALGHGDRRSTSVPREVKIL---SGL 446
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLE-----SMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V +V CG +HTA L E +T+G GE GQLGHG + L+PE V
Sbjct: 447 IVTKVACGVWHTAALVEVTNEASEAEVGSSRGQVFTWGDGEKGQLGHGDNDAQLLPECVI 506
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L + V CG T ++S G V++ G S + G+ + G
Sbjct: 507 SLSNE-NICQVACGHSLTVSLTSTGHVYTMG-----------STAYGQLGNPTA----KG 550
Query: 236 NGP---HGPKFQDPV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
N P G + V ++ACG+ H ++T ++++WG+G +G LG G + PA+V
Sbjct: 551 NFPARVEGDIVEASVEEIACGSYHVAVLTSKS-EIYTWGKGLNGQLGHGTIENKREPAVV 609
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 121/294 (41%), Gaps = 48/294 (16%)
Query: 17 IDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV----KVACGSEHVVAL 72
D G +++WG T G SL S+ + T+V +ACG H V +
Sbjct: 243 FDALGDVFVWGESICDGVLTGTGNSLNSTTEDVLLPKALESTIVLDAQNIACGKCHAVLV 302
Query: 73 VSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHT 132
GE + SWG G+LG G +PK I + + CG FHT
Sbjct: 303 TKQGEIF--------SWGEGKGGKLGHGLETDVQQPKFISSVRG---LGFKSLACGDFHT 351
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFH 192
+T + D+ W G LGHG S +P++V Q +Y+ V CG +H
Sbjct: 352 CAIT---QSGDLYS---WGDGTHNVDLLGHGNESSCWIPKRVTGALQGLYVSYVACGPWH 405
Query: 193 TSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
T+VV+S+G ++++G LG S + +S ++++ +VA
Sbjct: 406 TAVVASSGQLFTFGDGSFGALGHGDRRSTSVPREVKILSGLIVT-------------KVA 452
Query: 251 CGAAHT---VLVTDDGY---------KLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
CG HT V VT++ ++++WG G G LG G P V+
Sbjct: 453 CGVWHTAALVEVTNEASEAEVGSSRGQVFTWGDGEKGQLGHGDNDAQLLPECVI 506
>gi|426255642|ref|XP_004021457.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
[Ovis aries]
Length = 979
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCKKQASPQLIKSLLGIPFMQI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ +
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLRTQK---I 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 245 VYICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCKKQASPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ ++ G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QIAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RTQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFVNKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|344275073|ref|XP_003409338.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
2 [Loxodonta africana]
Length = 1049
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GLDCKKQASPKLLKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLADIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + PK++++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGLDCKKQASPKLLKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 103/252 (40%), Gaps = 68/252 (26%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL----------- 135
WG + GQLGLG D E L P+ + F V +V CG HT +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFVLDDGTVYTCGC 60
Query: 136 ---------THRKRPNDML----------------------ESMCWTFGLGENGQLG-HG 163
RK+P ++ + + +GL +GQLG G
Sbjct: 61 NDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLLG 120
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASL 219
+ + VP +K L + +V V CG +H+ +S A +V+ WG K GLGL
Sbjct: 121 SEECIRVPRNIKSLAD-IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGL------ 173
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
+ SP L+ G F +QVA G AH+ ++T G ++ WGR + G LG
Sbjct: 174 ---DCKKQASPKLLK--SLLGIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGL 224
Query: 280 GKTIDFFAPAIV 291
D + P ++
Sbjct: 225 NDENDRYVPNLL 236
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWG---RGRSGVLGTGKTI 283
++WG G+ G+LG+ + I
Sbjct: 106 YAWGLDSDGQLGLLGSEECI 125
>gi|344275071|ref|XP_003409337.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
1 [Loxodonta africana]
Length = 1057
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GLDCKKQASPKLLKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLADIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + PK++++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGLDCKKQASPKLLKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 103/252 (40%), Gaps = 68/252 (26%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL----------- 135
WG + GQLGLG D E L P+ + F V +V CG HT +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFVLDDGTVYTCGC 60
Query: 136 ---------THRKRPNDML----------------------ESMCWTFGLGENGQLG-HG 163
RK+P ++ + + +GL +GQLG G
Sbjct: 61 NDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLLG 120
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASL 219
+ + VP +K L + +V V CG +H+ +S A +V+ WG K GLGL
Sbjct: 121 SEECIRVPRNIKSLAD-IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGL------ 173
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
+ SP L+ G F +QVA G AH+ ++T G ++ WGR + G LG
Sbjct: 174 ---DCKKQASPKLLK--SLLGIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGL 224
Query: 280 GKTIDFFAPAIV 291
D + P ++
Sbjct: 225 NDENDRYVPNLL 236
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|296220559|ref|XP_002756357.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
[Callithrix jacchus]
Length = 979
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 107/239 (44%), Gaps = 34/239 (14%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
F V V CG H V ++ G Y+ G N+ GQ LG +SR +P+ +
Sbjct: 31 FINKKVQDVGCGLRHTVFVLDDG--------TVYTCGCNDLGQ--LGHEKSRKKPEQVVA 80
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-HGTTQSALVPE 172
+ + + V+CG HT L ND + W GL +GQLG G+ + VP
Sbjct: 81 LDAQN---IVAVSCGEAHTLAL------NDKGQVYAW--GLDSDGQLGLLGSEECIRVPR 129
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
+K L + +V V CG +H+ +S A +V+ WG K L + + I +L
Sbjct: 130 NIKSLSD-IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLL 188
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G F +QVA G AH+ ++T G ++ WGR + G LG D + P ++
Sbjct: 189 -------GIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGLNDENDRYVPNLL 236
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VQDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVQDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|357121203|ref|XP_003562310.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like
[Brachypodium distachyon]
Length = 480
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 130/293 (44%), Gaps = 65/293 (22%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
LW+WG + ++ +F P+ V +++V+CG+ HV+AL E
Sbjct: 142 LWVWGQ----NQGSDYPRLFWGAFAPNTV-------ILQVSCGAVHVMAL--------SE 182
Query: 83 DLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQ---DSPWAV--YEVTCGSFHTALLT 136
D V +WG N GQLG G L+ +++ + + D+P V V+CG +H A ++
Sbjct: 183 DGVLQAWGYNEYGQLGRGCTSEGLQGARVLNAYARFLDDAPELVKIVRVSCGEYHAAAIS 242
Query: 137 HRKRPNDMLESMCWTFGLGENGQLGHGTTQSA---LVPEQVKELPQYVYLVSVDCGLFHT 193
+T+GLG GQLGH + QS L+P +V L V V CG H+
Sbjct: 243 EHGE--------VYTWGLGSMGQLGHRSLQSGDKELIPRRVVALEGMV-AGDVSCGGVHS 293
Query: 194 SVVSSAGDVWSWG--MEKGLGLCPNAS-----------LTRNEAGDAISPILISGNGPHG 240
V+ G +++WG LGL P + L RN P+L+ P G
Sbjct: 294 CAVTEGGTLYAWGGGHVGQLGLGPQSGFFSCALNGSDMLLRN------IPVLVI---PSG 344
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
+ V CG +HT++ DG +++ WG G K+ + P+ V W
Sbjct: 345 VRL-----VTCGHSHTLISMKDG-RIYGWGYNSYGQAANEKSTYAWYPSPVDW 391
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 115/284 (40%), Gaps = 73/284 (25%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ +ACG EH A+ S G ++WGAN+ GQLG G ES PK + +
Sbjct: 63 IDIACGREHTAAVASDGSL--------FTWGANDFGQLGDGTEESAKEPKKVNAIETE-- 112
Query: 120 WAVYEVTCGSFHTALLTH-RKRPNDMLESMCWT--------------------------- 151
V V+CG+ TA + R+ + +S W
Sbjct: 113 -FVKSVSCGAHCTAAIAEPRENDGTISKSRLWVWGQNQGSDYPRLFWGAFAPNTVILQVS 171
Query: 152 -----------------FGLGENGQLGHGTTQSALVPEQV--------KELPQYVYLVSV 186
+G E GQLG G T L +V + P+ V +V V
Sbjct: 172 CGAVHVMALSEDGVLQAWGYNEYGQLGRGCTSEGLQGARVLNAYARFLDDAPELVKIVRV 231
Query: 187 DCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 246
CG +H + +S G+V++WG+ +G + SL + + I +++ G
Sbjct: 232 SCGEYHAAAISEHGEVYTWGLGS-MGQLGHRSLQSGDK-ELIPRRVVALEG------MVA 283
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
V+CG H+ VT+ G L++WG G G LG G FF+ A+
Sbjct: 284 GDVSCGGVHSCAVTEGG-TLYAWGGGHVGQLGLGPQSGFFSCAL 326
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 47/222 (21%)
Query: 87 YSWGANNNGQLGLGDRESRLR------PKIIETFN-QDSPWAVYEVTCGSFHTALLTHRK 139
Y WG N +GQ ++ LR PK+ + + ++ W ++ CG HTA +
Sbjct: 22 YIWGYNQSGQTARKGKDRHLRIPKSLPPKLFKCRDGENLRW--IDIACGREHTAAVAS-- 77
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS-- 197
+ +T+G + GQLG GT +SA P++V + + ++ SV CG T+ ++
Sbjct: 78 ------DGSLFTWGANDFGQLGDGTEESAKEPKKVNAI-ETEFVKSVSCGAHCTAAIAEP 130
Query: 198 -------SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
S +W WG +G + R G A +P + +QV+
Sbjct: 131 RENDGTISKSRLWVWGQNQG------SDYPRLFWG-AFAPNTV------------ILQVS 171
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
CGA H + +++DG L +WG G LG G T + A VL
Sbjct: 172 CGAVHVMALSEDGV-LQAWGYNEYGQLGRGCTSEGLQGARVL 212
>gi|315645418|ref|ZP_07898542.1| hypothetical protein PVOR_07930 [Paenibacillus vortex V453]
gi|315278896|gb|EFU42206.1| hypothetical protein PVOR_07930 [Paenibacillus vortex V453]
Length = 667
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 124/294 (42%), Gaps = 48/294 (16%)
Query: 1 MSQICSVKAG-GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+S I ++ G G S+A+ G +W WG D+ G + V +P V V
Sbjct: 133 LSGIKAISGGLGYHSMALTENGTVWTWGKN---DNGELGNGTTVQQNSPVLVIGLS--DV 187
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+A G + +AL S G ++WGAN NG+LG G + P + +
Sbjct: 188 TAIAAGGYYSLALKSDG--------TIWAWGANGNGELGDGTIVDKHTPVQVSGLSD--- 236
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +T G H+ + + W +G+ G LG GT + +P +V+ L
Sbjct: 237 --VIAITAGGSHSLAIKQ--------DGTVWAWGINMYGTLGDGTRTNRTIPVKVRNLQ- 285
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGNG 237
++ ++ G H+ + G+VW WG +G LGL N+S T E I +L
Sbjct: 286 --HIKAIAGGGHHSLALDQEGNVWGWGDNSRGQLGLGHNSSRTTPEQLTGIEHVL----- 338
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A G H+ + DG ++W WG SG +G G D APA+
Sbjct: 339 ----------DIAGGGFHSAALKKDG-RVWGWGLNSSGQIGDGTRNDRNAPALT 381
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 98/232 (42%), Gaps = 39/232 (16%)
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
K+ G H +LVS+G+ Y WG + GQ+G +R P N
Sbjct: 38 KLVAGYYHTASLVSSGD--------VYVWGQGDRGQIGDAAWNARNTPVQARGLND---- 85
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++ G T L + WT+G ENGQLG GTT VP V L
Sbjct: 86 -VMDIHTGVRSTMALRS--------DGTVWTWGSNENGQLGIGTTADKNVPTPVSGLSG- 135
Query: 181 VYLVSVDCGL-FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ ++ GL +H+ ++ G VW+WG L ++ +N SP+L+ G
Sbjct: 136 --IKAISGGLGYHSMALTENGTVWTWGKNDNGELGNGTTVQQN------SPVLVIG---- 183
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D +A G +++ + DG +W+WG +G LG G +D P V
Sbjct: 184 ---LSDVTAIAAGGYYSLALKSDG-TIWAWGANGNGELGDGTIVDKHTPVQV 231
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 113/288 (39%), Gaps = 42/288 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + + G ++A+ + G +W WG+ ++ G + P+PV G +
Sbjct: 83 LNDVMDIHTGVRSTMALRSDGTVWTWGSN---ENGQLGIGTTADKNVPTPVSGLSGIKAI 139
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
G H +AL E+ ++WG N+NG+LG G + P ++ +
Sbjct: 140 SGGLG-YHSMALT--------ENGTVWTWGKNDNGELGNGTTVQQNSPVLVIGLSD---- 186
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G +++ L + W +G NG+LG GT P QV L
Sbjct: 187 -VTAIAAGGYYSLALKS--------DGTIWAWGANGNGELGDGTIVDKHTPVQVSGLSD- 236
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++++ G H+ + G VW+WG+ G + + T P+ +
Sbjct: 237 --VIAITAGGSHSLAIKQDGTVWAWGINM-YGTLGDGTRTNRTI-----PVKVR------ 282
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
Q +A G H++ + +G +W WG G LG G P
Sbjct: 283 -NLQHIKAIAGGGHHSLALDQEG-NVWGWGDNSRGQLGLGHNSSRTTP 328
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 80/199 (40%), Gaps = 37/199 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + ++ AGG SLAI G +W WG + T G + + P V + +
Sbjct: 234 LSDVIAITAGGSHSLAIKQDGTVWAWG---INMYGTLGDGTRTNRTIPVKVRNLQ--HIK 288
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +AL G + WG N+ GQLGLG SR P+ +
Sbjct: 289 AIAGGGHHSLALDQEGN--------VWGWGDNSRGQLGLGHNSSRTTPEQLTGIEH---- 336
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++ G FH+A L R W +GL +GQ+G GT P K +
Sbjct: 337 -VLDIAGGGFHSAALKKDGR--------VWGWGLNSSGQIGDGTRNDRNAPALTKAVLDT 387
Query: 181 V-----------YLVSVDC 188
YL++VD
Sbjct: 388 TAPDTGRGMLSPYLITVDS 406
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 26/170 (15%)
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
++ G +HTA L + +G G+ GQ+G + P Q + L +
Sbjct: 38 KLVAGYYHTASLVS--------SGDVYVWGQGDRGQIGDAAWNARNTPVQARGLND---V 86
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+ + G+ T + S G VW+WG + N L D P +SG
Sbjct: 87 MDIHTGVRSTMALRSDGTVWTWGSNE------NGQLGIGTTADKNVPTPVSG-------L 133
Query: 244 QDPVQVACGAA-HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
++ G H++ +T++G +W+WG+ +G LG G T+ +P +V+
Sbjct: 134 SGIKAISGGLGYHSMALTENG-TVWTWGKNDNGELGNGTTVQQNSPVLVI 182
>gi|114321835|ref|YP_743518.1| regulator of chromosome condensation, RCC1 [Alkalilimnicola
ehrlichii MLHE-1]
gi|114228229|gb|ABI58028.1| regulator of chromosome condensation, RCC1 [Alkalilimnicola
ehrlichii MLHE-1]
Length = 818
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 92/210 (43%), Gaps = 30/210 (14%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
+D ++WG NN GQLGLGD + R P+ + + + WA V S+HT + +
Sbjct: 487 DDGTLWAWGRNNYGQLGLGDTDDRATPEQVGSH---TDWAA--VNAASYHTLAVKN---- 537
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ W +G +GQLG T PE+V + +V G HTS V G
Sbjct: 538 ----DGTLWAWGRNSSGQLGLSDTNDRHTPERVGSDTDW---ATVSVGQSHTSAVKPDGT 590
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+W+WG L + D +SP + G + + V+ G HTV V
Sbjct: 591 LWAWGWNH------YGQLGLGDTSDRLSPEQVGGE-------SNWLAVSTGLHHTVAVKT 637
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
DG LW+WG G LG G T D AP V
Sbjct: 638 DG-TLWAWGWNVRGQLGLGHTSDRHAPVQV 666
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 119/290 (41%), Gaps = 49/290 (16%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
+V A +LA+ N G LW WG +SS + G S + HT +V
Sbjct: 523 AAVNAASYHTLAVKNDGTLWAWGR----NSSGQLGLSDTNDR----------HTPERV-- 566
Query: 65 GSEHVVALVSAGETYKGE---DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
GS+ A VS G+++ D ++WG N+ GQLGLGD RL P E +S W
Sbjct: 567 GSDTDWATVSVGQSHTSAVKPDGTLWAWGWNHYGQLGLGDTSDRLSP---EQVGGESNW- 622
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V+ G HT + + W +G GQLG G T P QV +
Sbjct: 623 -LAVSTGLHHTVAV--------KTDGTLWAWGWNVRGQLGLGHTSDRHAPVQVGSDTDWA 673
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+V + T V + G +W+WG N L + + +P + +
Sbjct: 674 ---AVSASGYRTLAVKADGTLWAWGENN------NGQLGLGDTDNRNTPAQVGND----- 719
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D V+ G HT+ +D LW+WGR G LG G T + AP V
Sbjct: 720 --ADWAAVSTGLFHTLAFKEDD-TLWAWGRNHDGQLGLGDTDNRDAPVQV 766
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 112/290 (38%), Gaps = 44/290 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S +V AG ++A+ G LW WG G W +
Sbjct: 173 SDWTAVSAGRDHTVAVKANGTLWAWGRSGRIGLGDSGDRDEPEQVGVDNDW-------IA 225
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
++ G H VA+ + G ++WG NN GQLGLGD P + T D+ WA
Sbjct: 226 LSAGGSHTVAVKADG--------TLWAWGRNNAGQLGLGDTNHHYTPTQVGT---DTDWA 274
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+++ G H+ + + W +G E GQLG G T PEQV +
Sbjct: 275 -KKISAGRRHSLAV--------KADGSLWAWGDNEYGQLGLGDTDERHAPEQVGSNTDW- 324
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++ G H+ V + G +WSWG + L + D +P + +
Sbjct: 325 --AAISAGRRHSLAVKADGSLWSWGYND------SGQLGLGDTADRNAPEQVGAD----- 371
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D V+ G H++ V DG L WG G LG G T+ AP +
Sbjct: 372 --TDWDLVSAGGEHSLAVKADG-TLMVWGLNHLGQLGLGDTVSRDAPVPI 418
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 102/270 (37%), Gaps = 69/270 (25%)
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+A G +H VA+ + G ++WG N G+LGLGD + R P+ + T DS W
Sbjct: 128 LAAGDDHTVAVKADG--------TLWAWGRNGYGRLGLGDTDDRDVPEQVGT---DSDWT 176
Query: 122 VYEVTCGSFHTALLT--------------------HRKRP------NDML---------- 145
V+ G HT + R P ND +
Sbjct: 177 A--VSAGRDHTVAVKANGTLWAWGRSGRIGLGDSGDRDEPEQVGVDNDWIALSAGGSHTV 234
Query: 146 ----ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ W +G GQLG G T P QV + +S G H+ V + G
Sbjct: 235 AVKADGTLWAWGRNNAGQLGLGDTNHHYTPTQVGTDTDWAKKIS--AGRRHSLAVKADGS 292
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+W+WG + L + + +P + N D ++ G H++ V
Sbjct: 293 LWAWGDNE------YGQLGLGDTDERHAPEQVGSN-------TDWAAISAGRRHSLAVKA 339
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
DG LWSWG SG LG G T D AP V
Sbjct: 340 DG-SLWSWGYNDSGQLGLGDTADRNAPEQV 368
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 92/214 (42%), Gaps = 43/214 (20%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S +V G ++A+ G LW WG + G L GHT +
Sbjct: 620 SNWLAVSTGLHHTVAVKTDGTLWAWG------WNVRGQLGL-------------GHTSDR 660
Query: 62 ---VACGSEHVVALVSAGETYKG----EDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
V GS+ A VSA Y+ D ++WG NNNGQLGLGD ++R P +
Sbjct: 661 HAPVQVGSDTDWAAVSA-SGYRTLAVKADGTLWAWGENNNGQLGLGDTDNRNTPAQV--- 716
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
D+ WA V+ G FHT + +D L W +G +GQLG G T + P QV
Sbjct: 717 GNDADWAA--VSTGLFHTLAF----KEDDTL----WAWGRNHDGQLGLGDTDNRDAPVQV 766
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ +V G +HT S G + +WG+
Sbjct: 767 GNETDW---STVSGGGYHTLATMSDGTLRAWGLN 797
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 125/299 (41%), Gaps = 73/299 (24%)
Query: 7 VKAGGMMSLAIDNAGALWMWGN-----CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+ AG SLA+ G+LW WG+ L D+ V S T D+
Sbjct: 277 ISAGRRHSLAVKADGSLWAWGDNEYGQLGLGDTDERHAPEQVGSNT-----DW-----AA 326
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
++ G H +A+ + G +SWG N++GQLGLGD R P E D+ W
Sbjct: 327 ISAGRRHSLAVKADGS--------LWSWGYNDSGQLGLGDTADRNAP---EQVGADTDWD 375
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ V+ G H+ + + + L M W GL GQLG G T S P +
Sbjct: 376 L--VSAGGEHSLAV----KADGTL--MVW--GLNHLGQLGLGDTVSRDAPVPIAS----- 420
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLG-----LCPNASLTRNEAGDAISPIL 232
+++ G HT V+ G + +WG + GLG + P+ ++T G A + +
Sbjct: 421 -GIALVAGRNHTVAVNPDGTLRAWGDNEYGQLGLGVMRYIVTPSQTVT----GSAWAAV- 474
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+G F H++ + DDG LW+WGR G LG G T D P V
Sbjct: 475 ------NGGSFN----------HSLGLRDDG-TLWAWGRNNYGQLGLGDTDDRATPEQV 516
>gi|168058364|ref|XP_001781179.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667416|gb|EDQ54047.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 466
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 137/338 (40%), Gaps = 80/338 (23%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ S + G++S+AI G+LW WG G ++ + TP V G VV+V
Sbjct: 136 EVVSARGSGVVSMAIARDGSLWTWGKSKRGQLGL--GTKIMYAQTPKRVEALVGQQVVQV 193
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG--LGDRES------RLRPKIIETF 114
A G H +A + G YSWG NG+LG L D ES + P I
Sbjct: 194 ALGWGHALARTAEGHV--------YSWGYAANGRLGFQLSDSESAETSVKKTSPTAIARV 245
Query: 115 NQDS---------------------PWA-----------VYEVTCGSFHTALLTHRKRPN 142
+ +S W V E++CG H+ L +
Sbjct: 246 DNESIEEAAYRQVLEDMEKEKSPVLAWEPVRINSLCSQHVTEISCGMDHSLTLNEKGE-- 303
Query: 143 DMLESMCWTFGLGENGQLGHGTTQSAL---------VPEQVKELPQYVYLVSVDCGLFHT 193
+C +FG GQLG T SA+ + V+ L + ++ V GL H+
Sbjct: 304 -----LC-SFGDNSLGQLGRSTAISAVQSSIFAVENSEDHVQGLIRGEKVLHVGAGLGHS 357
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
V++ G ++SWG G L R+E D+ P + D V + G
Sbjct: 358 LAVTAQGSIYSWGWNAG------HQLGRDERQDSSLPACVE------DVEGDVVALVGGR 405
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
AH++ +T G +LW WG G++G LG G D +P ++
Sbjct: 406 AHSLALTSQG-QLWVWGSGKNGRLGLGSPADEPSPLLL 442
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 22/165 (13%)
Query: 129 SFHTALLTHRKR---PNDMLESMCWTFGLGENGQLGHGTT--QSALVPEQVKELPQYVYL 183
+FHT LT R ++ +FG G +G LGH A P ++ LP+ V
Sbjct: 25 AFHTGRLTQFGRDFGTTIAKKTRVLSFGDGSHGALGHTDCFGGDAYEPREINGLPEDV-- 82
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
VSV G +H+ V+ G++W+WG L TR + + P +
Sbjct: 83 VSVGAGHYHSMAVAQTGELWAWGRNLEGQLGERDGNTREKW-----------HQPQRVRG 131
Query: 244 QDPVQVACGAAHTVL---VTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ V+V V+ + DG LW+WG+ + G LG G I +
Sbjct: 132 LESVEVVSARGSGVVSMAIARDG-SLWTWGKSKRGQLGLGTKIMY 175
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 77/201 (38%), Gaps = 28/201 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS--FTPSPVWD-----FH 55
+ + G SL ++ G L +G+ L S V S F D
Sbjct: 284 HVTEISCGMDHSLTLNEKGELCSFGDNSLGQLGRSTAISAVQSSIFAVENSEDHVQGLIR 343
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G V+ V G H +A+ + G Y SWG N QLG +R+ P +E
Sbjct: 344 GEKVLHVGAGLGHSLAVTAQGSIY--------SWGWNAGHQLGRDERQDSSLPACVEDVE 395
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
D V + G H+ LT + W +G G+NG+LG G+ P ++
Sbjct: 396 GD----VVALVGGRAHSLALTS--------QGQLWVWGSGKNGRLGLGSPADEPSPLLLE 443
Query: 176 ELPQYVYLVSVDCGLFHTSVV 196
L + + V CG H+ ++
Sbjct: 444 SLENHC-IAEVACGFDHSLIL 463
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 120/336 (35%), Gaps = 74/336 (22%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ SV AG S+A+ G LW WG G + P V +V V+
Sbjct: 82 VVSVGAGHYHSMAVAQTGELWAWGRNLEGQLGERDGNTREKWHQPQRVRGL--ESVEVVS 139
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAV 122
VV++ A D ++WG + GQLGLG + + PK +E V
Sbjct: 140 ARGSGVVSMAIA------RDGSLWTWGKSKRGQLGLGTKIMYAQTPKRVEALVGQQ---V 190
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL-PQYV 181
+V G H T E +++G NG+LG + S VK+ P +
Sbjct: 191 VQVALGWGHALART--------AEGHVYSWGYAANGRLGFQLSDSESAETSVKKTSPTAI 242
Query: 182 -----------------------------------------YLVSVDCGLFHTSVVSSAG 200
++ + CG+ H+ ++ G
Sbjct: 243 ARVDNESIEEAAYRQVLEDMEKEKSPVLAWEPVRINSLCSQHVTEISCGMDHSLTLNEKG 302
Query: 201 DVWSWGMEKGLGLCPNASLTRNEAGDAI--SPILISGNGPHGP---KFQDPVQVACGAAH 255
++ S+G + LG L R+ A A+ S + + H + + + V G H
Sbjct: 303 ELCSFG-DNSLG-----QLGRSTAISAVQSSIFAVENSEDHVQGLIRGEKVLHVGAGLGH 356
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ VT G ++SWG LG + D PA V
Sbjct: 357 SLAVTAQG-SIYSWGWNAGHQLGRDERQDSSLPACV 391
>gi|335296869|ref|XP_003357882.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Sus scrofa]
Length = 531
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 94/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGIAP--IQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +VS+ CG + V G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVSIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLSPAHIM 280
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 128/322 (39%), Gaps = 54/322 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLI-----KQVVEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
++WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 V--------FAWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKRVVSIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV-ACGAAHT 256
G +++WG L + +SP I + + V++ AC +AHT
Sbjct: 250 DEGLLYAWGANT------YGQLGTGNKNNLLSPAHIM------VEKERVVEIAACHSAHT 297
Query: 257 VLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNT 307
G ++ WG RG+S L T FA V W L+ E +D L
Sbjct: 298 SAAKTQGGHVYMWGQCRGQSVTLPHLTHFSSTDDVFACFATPAVTWRLLSVE-HEDFLTV 356
Query: 308 GGLDDEIKTKDLEGAEERDEKL 329
E K+ + E D K
Sbjct: 357 A----ESLKKEFDSPETADLKF 374
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSNCLGTGDNQSTLVPKKLEALCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+PI + N + V+VACG+ H++ + DG ++++
Sbjct: 103 G------YSQLGNGTTNQGIAPIQVCTN----LLIKQVVEVACGSHHSMALAADG-EVFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 152 WGYNNCGQVGSGSTANQPTP 171
>gi|344292741|ref|XP_003418084.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like
[Loxodonta africana]
Length = 1100
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 117/260 (45%), Gaps = 38/260 (14%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
+ P V V ACG H + G Y+ G NN GQLGLGD E R
Sbjct: 72 YRPICVKALKSEKVKLAACGRNHTLVSTEGGN--------VYATGGNNEGQLGLGDTEER 123
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
+I F S + +++ G+ +A LT + + +G GQ+G +
Sbjct: 124 NSFHLISFFT--SRHKIKQLSAGANISAALTE--------DGELFMWGDNSEGQIGLNSI 173
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
+ VP QV + + + +S CG +H++ V+ G ++++G + C L +
Sbjct: 174 SNVYVPRQVT-VGKPISWIS--CGYYHSAFVTMEGKLYTFGEPE----CGKLGLPSEQLI 226
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ P L+SG + +QVACG HTV++T+ ++++G+GR G LG G I F
Sbjct: 227 NHRKPQLVSGIS------EKVIQVACGGGHTVVLTEKA--VYTFGQGRFGQLGLGSFI-F 277
Query: 286 FAPAIVLWPPLTEEFKQDEL 305
AP P + E K ++
Sbjct: 278 QAPE----PAILEHVKDQKI 293
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 133/301 (44%), Gaps = 54/301 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ S + G + + +N G L L D+ F L+S FT H + +++
Sbjct: 96 LVSTEGGNVYATGGNNEGQLG------LGDTEERNSFHLISFFTSR-------HKIKQLS 142
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G+ AL GE + WG N+ GQ+GL + P+ + T + W
Sbjct: 143 AGANISAALTEDGE--------LFMWGDNSEGQIGLNSISNVYVPRQV-TVGKPISW--- 190
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ--SALVPEQVKELPQYV 181
++CG +H+A +T +E +TFG E G+LG + Q + P+ V + + V
Sbjct: 191 -ISCGYYHSAFVT--------MEGKLYTFGEPECGKLGLPSEQLINHRKPQLVSGISEKV 241
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG HT V++ V+++G + L + + + A P ++
Sbjct: 242 --IQVACGGGHTVVLTEKA-VYTFGQGRFGQLGLGSFIFQ-----APEPAIL-----EHV 288
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFK 301
K Q ++CG HT L+TD G+ ++++G GR G LG G ++ F V P L F
Sbjct: 289 KDQKIRHISCGENHTALITDVGH-MYTFGDGRHGKLGLG--LENFTNQFV--PTLCSHFS 343
Query: 302 Q 302
+
Sbjct: 344 K 344
>gi|296220557|ref|XP_002756356.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
[Callithrix jacchus]
Length = 1057
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 107/239 (44%), Gaps = 34/239 (14%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
F V V CG H V ++ G Y+ G N+ GQ LG +SR +P+ +
Sbjct: 31 FINKKVQDVGCGLRHTVFVLDDG--------TVYTCGCNDLGQ--LGHEKSRKKPEQVVA 80
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-HGTTQSALVPE 172
+ + + V+CG HT L ND + W GL +GQLG G+ + VP
Sbjct: 81 LDAQN---IVAVSCGEAHTLAL------NDKGQVYAW--GLDSDGQLGLLGSEECIRVPR 129
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
+K L + +V V CG +H+ +S A +V+ WG K L + + I +L
Sbjct: 130 NIKSLSD-IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLL 188
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G F +QVA G AH+ ++T G ++ WGR + G LG D + P ++
Sbjct: 189 -------GIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGLNDENDRYVPNLL 236
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VQDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVQDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|344247622|gb|EGW03726.1| putative E3 ubiquitin-protein ligase HERC4 [Cricetulus griseus]
Length = 835
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCKKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ +
Sbjct: 196 AAGGAHSFVLTLSGAI--------FGWGRNKFGQLGLNDENDRYVPNLLKSLRSQK---I 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 245 VYICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ V CG HTS V S+G ++S+G+ N L + SP + GN
Sbjct: 296 VTQVACGRQHTSAFVPSSGRIYSFGLGG------NGQLGTGSTSNRKSPFTVKGN 344
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 113/245 (46%), Gaps = 43/245 (17%)
Query: 53 DFHGHTVVK-VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
DF + V+ V CG H V ++ G Y+ G N+ GQ LG +SR +P+ +
Sbjct: 29 DFFANKKVRDVGCGLRHTVFVLDDGTV--------YTCGCNDLGQ--LGHEKSRKKPEQV 78
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-HGTTQSALV 170
+ + + V+CG HT L ND + W GL +GQLG G+ + V
Sbjct: 79 VALDAQN---IVAVSCGEAHTLAL------NDKGQVYSW--GLDSDGQLGLLGSEEYIRV 127
Query: 171 PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGD 226
P +K L + +V V CG +H+ +S A +V+ WG K GLG+ +
Sbjct: 128 PRNIKSLSD-IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGI---------DCKK 177
Query: 227 AISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFF 286
SP LI G F +QVA G AH+ ++T G ++ WGR + G LG D +
Sbjct: 178 QTSPQLI--KSLLGIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGLNDENDRY 231
Query: 287 APAIV 291
P ++
Sbjct: 232 VPNLL 236
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYSWG------LDSDGQLGLLGSEEYIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCKKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ QVACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASYGQLGLGGIDEEIVLEPRKSDFFANKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V+SWG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYSWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEEYIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASYGQLGLGGIDEEIVLEPRKSDFFANKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
+SWG G LG
Sbjct: 106 YSWGLDSDGQLG 117
>gi|440801355|gb|ELR22375.1| regulator of chromosome condensation, RCC1, putative [Acanthamoeba
castellanii str. Neff]
Length = 395
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 134/310 (43%), Gaps = 54/310 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNC---PLPDSSTEGGFSLVSSFTPSPVWDFHGHT- 58
++ +V AGG SL + G ++ +GN L + E + F P + F
Sbjct: 38 RVVAVSAGGHHSLVLTEEGRVFSFGNGLHGRLGHGNEE------TCFEPRRIAFFDTTAG 91
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF---- 114
V K++ G+ H +AL G+ YS+G G+LG GD +L P+ I
Sbjct: 92 VAKISAGTTHSLALTKDGK--------AYSFGFGMFGRLGHGDETDQLLPREITLRGHGA 143
Query: 115 ----------NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
N+ P + V G FH+ LLT R ++FG G G LGHG
Sbjct: 144 SPPVGDRVEENETDP-VIEHVAAGYFHSLLLTTDGR--------VYSFGAGVMGALGHGD 194
Query: 165 TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA 224
L P ++ L +VS+ CG +T V+ G V+ +G++ + +
Sbjct: 195 RDKRLRPTMIEALADR-RIVSMACGSANTLVLDDEGRVFFFGLDY-------SEFPKFTE 246
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
G A +L S G ++ +V G H +L+T +G KL ++G G++G LG G +
Sbjct: 247 GQARFVLLPSALG----LAEEITEVRAGEGHCLLLTREG-KLLAFGLGKNGRLGLGDETN 301
Query: 285 FFAPAIVLWP 294
AP V +P
Sbjct: 302 RLAPTAVTFP 311
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 108/237 (45%), Gaps = 45/237 (18%)
Query: 49 SPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP 108
+P+ H VV V+ G H + L G +S+G +G+LG G+ E+ P
Sbjct: 29 TPIRALEAHRVVAVSAGGHHSLVLTEEGR--------VFSFGNGLHGRLGHGNEETCFEP 80
Query: 109 KIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA 168
+ I F D+ V +++ G+ H+ LT + ++FG G G+LGHG
Sbjct: 81 RRIAFF--DTTAGVAKISAGTTHSLALTK--------DGKAYSFGFGMFGRLGHGDETDQ 130
Query: 169 LVP---------------EQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGL 213
L+P ++V+E + V G FH+ ++++ G V+S+G G+
Sbjct: 131 LLPREITLRGHGASPPVGDRVEENETDPVIEHVAAGYFHSLLLTTDGRVYSFGA----GV 186
Query: 214 CPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG 270
+L + + P +I + V +ACG+A+T+++ D+G +++ +G
Sbjct: 187 M--GALGHGDRDKRLRPTMIEALAD-----RRIVSMACGSANTLVLDDEG-RVFFFG 235
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 115/284 (40%), Gaps = 30/284 (10%)
Query: 85 VCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDM 144
V S G +G LG GD ++L ++ V V+ G H+ +LT R
Sbjct: 4 VVLSAGGGQHGSLGQGDAVTQL--SVLTPIRALEAHRVVAVSAGGHHSLVLTEEGR---- 57
Query: 145 LESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
++FG G +G+LGHG ++ P ++ + + G H+ ++ G +S
Sbjct: 58 ----VFSFGNGLHGRLGHGNEETCFEPRRIAFFDTTAGVAKISAGTTHSLALTKDGKAYS 113
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISP--ILISGNG---PHGPKFQ----DPV--QVACGA 253
+ G G+ L + D + P I + G+G P G + + DPV VA G
Sbjct: 114 F----GFGMF--GRLGHGDETDQLLPREITLRGHGASPPVGDRVEENETDPVIEHVAAGY 167
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV--LWPPLTEEFKQDELNTGGLD 311
H++L+T DG +++S+G G G LG G P ++ L NT LD
Sbjct: 168 FHSLLLTTDG-RVYSFGAGVMGALGHGDRDKRLRPTMIEALADRRIVSMACGSANTLVLD 226
Query: 312 DEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHG 355
DE + K + LL S L + E + G
Sbjct: 227 DEGRVFFFGLDYSEFPKFTEGQARFVLLPSALGLAEEITEVRAG 270
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 84/202 (41%), Gaps = 26/202 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG--NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+I S+ G +L +D+ G ++ +G P TEG V PS + +
Sbjct: 211 RIVSMACGSANTLVLDDEGRVFFFGLDYSEFP-KFTEGQARFV--LLPSALGL--AEEIT 265
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+V G H + L G+ ++G NG+LGLGD +RL P + TF +
Sbjct: 266 EVRAGEGHCLLLTREGK--------LLAFGLGKNGRLGLGDETNRLAPTAV-TFPSNGTT 316
Query: 121 AV-YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE--- 176
+V ++ CG+ H L L + FG G+ GQL +G Q P
Sbjct: 317 SVEIDIACGAKHGLALVDVPGEGPRL----YAFGSGDQGQLANGHRQDRASPTATTTSLP 372
Query: 177 --LPQYVYLVSVDCGLFHTSVV 196
L Q++ ++ G H+ V+
Sbjct: 373 ALLHQHIVPAAISAGKAHSLVL 394
>gi|327261091|ref|XP_003215365.1| PREDICTED: RCC1 and BTB domain-containing protein 1-like [Anolis
carolinensis]
Length = 530
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 108/250 (43%), Gaps = 31/250 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + G + ++ GS HVV GE Y +WG N QLG G
Sbjct: 60 STIVPKKLESLSGKRIRSLSYGSGPHVVLSTEDGEVY--------AWGHNGYSQLGNGTT 111
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
+ P I+ V EV CGS H+ L+ + + +G GQ+G
Sbjct: 112 NQGVTP--IQVCTNLLIKKVIEVACGSHHSLALSS--------DGDVYAWGYNNCGQVGS 161
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + P +V Q +VS+ CG + + G+V+ WG N L
Sbjct: 162 GSTANQPTPRKVSNCLQTKIVVSIACGQTSSVAIVDNGEVYGWGYNG------NGQLGLG 215
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
G+ ++P ++ G +Q+ACG AHT+ +TD+G ++SWG G LGTG
Sbjct: 216 NNGNQLTPCRVA--ALQGVCI---MQIACGYAHTLALTDEGL-MYSWGANTYGQLGTGNK 269
Query: 283 IDFFAPAIVL 292
+ +P +L
Sbjct: 270 SNQLSPGQIL 279
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 95/214 (44%), Gaps = 29/214 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG--NCPLPDSSTEGGFSLVSSFTPSPVWD-FHGH 57
+ ++ V G SLA+ + G ++ WG NC G S + TP V +
Sbjct: 126 IKKVIEVACGSHHSLALSSDGDVYAWGYNNC-----GQVGSGSTANQPTPRKVSNCLQTK 180
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +ACG VA+V GE Y WG N NGQLGLG+ ++L P +
Sbjct: 181 IVVSIACGQTSSVAIVDNGEV--------YGWGYNGNGQLGLGNNGNQLTPCRVAALQ-- 230
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ ++ CG HT LT E + +++G GQLG G + L P Q+
Sbjct: 231 -GVCIMQIACGYAHTLALTD--------EGLMYSWGANTYGQLGTGNKSNQLSPGQILME 281
Query: 178 PQYVYLVSVDCGLFHTSVV-SSAGDVWSWGMEKG 210
+ V ++ C HTS + +G V+ WG +G
Sbjct: 282 KERVVEIAA-CHSAHTSAAKTQSGLVYMWGQCRG 314
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 116/275 (42%), Gaps = 44/275 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H +AL S G+ Y +WG NN GQ+G G ++ P+ + Q
Sbjct: 129 VIEVACGSHHSLALSSDGDVY--------AWGYNNCGQVGSGSTANQPTPRKVSNCLQTK 180
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + D E W G NGQLG G + L P +V L
Sbjct: 181 --IVVSIACGQTSSVAIV------DNGEVYGW--GYNGNGQLGLGNNGNQLTPCRVAAL- 229
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q V ++ + CG HT ++ G ++SWG L + +SP G
Sbjct: 230 QGVCIMQIACGYAHTLALTDEGLMYSWGAN------TYGQLGTGNKSNQLSP------GQ 277
Query: 239 HGPKFQDPVQVA-CGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAP 288
+ + V++A C +AHT ++ WG RG+S VL T F+
Sbjct: 278 ILMEKERVVEIAACHSAHTSAAKTQSGLVYMWGQCRGQSVVLPHVTHFSCTDDVFACFST 337
Query: 289 AIVLWPPLTEEFKQDELNTGGLDDEI---KTKDLE 320
V+W L+ E + T L E +T DL+
Sbjct: 338 PAVMWRLLSVEHEDFLTVTESLKREFDSPETSDLK 372
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS +VP++++ L + + +S G H + + G+V++WG
Sbjct: 43 FVFGLNCSNCLGTGDNQSTIVPKKLESLSGKRIRSLSYGSGP-HVVLSTEDGEVYAWGHN 101
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L ++PI + N + ++VACG+ H++ ++ DG +++
Sbjct: 102 G------YSQLGNGTTNQGVTPIQVCTN----LLIKKVIEVACGSHHSLALSSDG-DVYA 150
Query: 269 WGRGRSGVLGTGKTIDFFAPAIV 291
WG G +G+G T + P V
Sbjct: 151 WGYNNCGQVGSGSTANQPTPRKV 173
>gi|403273887|ref|XP_003928729.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
[Saimiri boliviensis boliviensis]
Length = 979
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|237835893|ref|XP_002367244.1| regulator of chromosome condensation domain-containing protein
[Toxoplasma gondii ME49]
gi|211964908|gb|EEB00104.1| regulator of chromosome condensation domain-containing protein
[Toxoplasma gondii ME49]
gi|221506080|gb|EEE31715.1| regulator of chromosome condensation domain-containing protein,
putative [Toxoplasma gondii VEG]
Length = 725
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 128/310 (41%), Gaps = 62/310 (20%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG----LGDRESRLR-- 107
G V ++ACG +HV A V T +GE Y WG GQ+G G R R
Sbjct: 411 LRGKRVTQIACG-KHVSAAV----TEEGE---LYVWGEGRGGQVGPPVPAGRRSEDRRKE 462
Query: 108 -----------------PKIIETF--------NQD-SPWAVYEVTCGSFHTALLTHRKRP 141
P+ +E + +QD +P V +V CGS H A LT
Sbjct: 463 VSTSTFPSSGLSFNVPTPRRLEVYGLAESEETSQDRTPKKVVQVACGSSHCAALTE---- 518
Query: 142 NDMLESMCWTFGLGENGQLGHGT-TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAG 200
+ +T+G + GQLG G ++ L+P +V L +VSV CG F T +S G
Sbjct: 519 ----DGEIYTWGSDDYGQLGLGKESRFVLLPRRVDALADK-RVVSVRCGHFFTCCTTSTG 573
Query: 201 DVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG-PHGPKFQDP--VQVACGAAHTV 257
+V+ WG + G C N DA P+LIS P G K + G H
Sbjct: 574 EVFVWGYGRD-GECGNGR------SDAALPVLISLEAQPGGKKHASGTVLDTVAGGGHLA 626
Query: 258 LVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTK 317
T +G LW WGRGR G LG G I+ A A P L EE ++
Sbjct: 627 ARTQEG-GLWMWGRGREGQLGRGDAIESVA-ASRDSPQLVEELWNRSPRGSQSRPSSDSR 684
Query: 318 DLEGAEERDE 327
L G +R+E
Sbjct: 685 ALTGLNDREE 694
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 100/273 (36%), Gaps = 88/273 (32%)
Query: 85 VCYSWGANNNGQLGLGDRE-SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPND 143
+ YSWG +GQLGLG S P+ + + + G+FH+ T R
Sbjct: 184 ILYSWGCGIDGQLGLGGSALSVSTPQPVPASALHDGEFILQCAAGAFHSVCCTSLGR--- 240
Query: 144 MLESMCWTFGLGENGQLGHG----------------------TTQSALVPEQVKELPQYV 181
+T+G G +LGH + S + V+ LP+ V
Sbjct: 241 -----VFTWGRGGKNRLGHDWPRETPASASPGGRPYRSSTKHLSASGIAETAVQTLPKCV 295
Query: 182 --------YLVSVDCGLFHTSVVSSAGDVWSWG--------------------------- 206
+ +V CG HT V++ +G+V+SWG
Sbjct: 296 EGLCRLSARVDAVACGEDHTLVLTDSGEVYSWGGNAHGECGRVETSESAEAVQAGDPART 355
Query: 207 -----------MEKGLG-LCPNASLTRNEAGDAISPI---------LISGNGPHGPKFQD 245
+KG G + A+ + A DA SP L+ G + +
Sbjct: 356 KRRSWLWGVLRGDKGEGDIDALATEEASSAHDANSPWAGRTEKEKGLVGGRVEGALRGKR 415
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
Q+ACG + VT++G +L+ WG GR G +G
Sbjct: 416 VTQIACGKHVSAAVTEEG-ELYVWGEGRGGQVG 447
>gi|115304951|gb|AAI23843.1| Hect domain and RLD 4 [Bos taurus]
Length = 853
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCKKQASPQLIKSLLGIPFMQI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ +
Sbjct: 196 AAGGAHSFVLTLSGAI--------FGWGRNKFGQLGLNDENDRYVPNLLKSLRTQK---I 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 245 VYICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCKKQASPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ ++ G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QIAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RTQKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWG---RGRSGVLGTGKTI 283
++WG G+ G+LG+ + I
Sbjct: 106 YAWGLDSDGQLGLLGSEECI 125
>gi|149043901|gb|EDL97352.1| rCG61079, isoform CRA_a [Rattus norvegicus]
Length = 546
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIECQKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSGAI--------FGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+G+ N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSFGLGG------NGQLGTGSTSNRKSPFTVKGN 344
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 130/297 (43%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLQGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG + + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIECQKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 104/252 (41%), Gaps = 68/252 (26%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTAL------------ 134
WG + GQLGLG D E L P+ + F V +V CG HT
Sbjct: 4 WGNASYGQLGLGGIDEEIVLEPRKSDFFVNKK---VRDVGCGLRHTVFVLDDGTVYTCGC 60
Query: 135 -----LTH---RKRPNDML----------------------ESMCWTFGLGENGQLG-HG 163
L H RK+P ++ + + +GL +GQLG G
Sbjct: 61 NDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLQG 120
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASL 219
+ + VP +K L + +V V CG +H+ +S A +V+ WG K GLG+
Sbjct: 121 SEECIRVPRNIKSLSD-IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGI------ 173
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
E SP LI G F +QVA G AH+ ++T G ++ WGR + G LG
Sbjct: 174 ---ECQKQTSPQLI--KSLLGIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGL 224
Query: 280 GKTIDFFAPAIV 291
D + P ++
Sbjct: 225 NDENDRYVPNLL 236
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASYGQLGLGGIDEEIVLEPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|402880679|ref|XP_003903925.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
[Papio anubis]
Length = 979
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIIQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
++VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 IQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I +QVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------IQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|426255640|ref|XP_004021456.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
[Ovis aries]
Length = 1049
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCKKQASPQLIKSLLGIPFMQI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ +
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLRTQK---I 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 245 VYICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCKKQASPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ ++ G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QIAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RTQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFVNKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWG---RGRSGVLGTGKTI 283
++WG G+ G+LG+ + I
Sbjct: 106 YAWGLDSDGQLGLLGSEECI 125
>gi|414587148|tpg|DAA37719.1| TPA: putative regulator of chromosome condensation (RCC1) family
protein [Zea mays]
Length = 188
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 89/170 (52%), Gaps = 23/170 (13%)
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
TVV V+ G+ H VAL++ +++C SWG +GQLG GD E RL P ++ F
Sbjct: 13 QTVVLVSAGASHSVALLTG-------NVLC-SWGRGEDGQLGHGDAEDRLVPTVLSGF-- 62
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
D+P A+ V CG+ HT + D L+ W G G+ G+LGHG + P+ VK
Sbjct: 63 DAP-AITSVICGADHTTAYS-----EDELQVYSW--GWGDFGRLGHGNSSDVFTPQPVKA 114
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRN 222
L Q + + + CG H V+ AG+V SWG + GLG ++ L +
Sbjct: 115 L-QGLKIKQIACGDSHCLAVTMAGEVQSWGRNQNGQLGLGTTEDSLLPQK 163
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
FTP PV G + ++ACG H +A+ AGE SWG N NGQLGLG E
Sbjct: 107 FTPQPVKALQGLKIKQIACGDSHCLAVTMAGEVQ--------SWGRNQNGQLGLGTTEDS 158
Query: 106 LRPKIIETF 114
L P+ I+ F
Sbjct: 159 LLPQKIQAF 167
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 21/171 (12%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
V AG S+A+ L WG + G P+ + F + V CG+
Sbjct: 18 VSAGASHSVALLTGNVLCSWGR---GEDGQLGHGDAEDRLVPTVLSGFDAPAITSVICGA 74
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
+H A Y ++L YSWG + G+LG G+ P+ ++ + ++
Sbjct: 75 DHTTA-------YSEDELQVYSWGWGDFGRLGHGNSSDVFTPQPVKALQG---LKIKQIA 124
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
CG H +T + ++G +NGQLG GTT+ +L+P++++
Sbjct: 125 CGDSHCLAVT--------MAGEVQSWGRNQNGQLGLGTTEDSLLPQKIQAF 167
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 80/172 (46%), Gaps = 24/172 (13%)
Query: 119 PWAVYEVTCGSFHT-ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P V V+ G+ H+ ALLT +C ++G GE+GQLGHG + LVP +
Sbjct: 12 PQTVVLVSAGASHSVALLTGN--------VLC-SWGRGEDGQLGHGDAEDRLVPTVLSGF 62
Query: 178 PQYVYLVSVDCGLFHTSVVSSAG-DVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ SV CG HT+ S V+SWG L + D +P +
Sbjct: 63 DAPA-ITSVICGADHTTAYSEDELQVYSWGWGD------FGRLGHGNSSDVFTPQPV--K 113
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
G K + Q+ACG +H + VT G ++ SWGR ++G LG G T D P
Sbjct: 114 ALQGLKIK---QIACGDSHCLAVTMAG-EVQSWGRNQNGQLGLGTTEDSLLP 161
>gi|440796662|gb|ELR17771.1| protein kinase domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 972
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 126/286 (44%), Gaps = 44/286 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S + S+ AG S+A+++ G + WG P S +G + PSP+ +
Sbjct: 35 SDLISLHAGWNCSVAVNSEGTPYFWGTMP---SKYDGKAKFLE---PSPL------PAIS 82
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ H L+ A T ED YS+G G+LG G + PK +E +
Sbjct: 83 IGFKLAHRRMLM-APTTTAVEDGTAYSFGQGEWGKLGHGGAANEQHPKQLEVQGK----- 136
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ-Y 180
V ++ G H+ LLT +TFG G GQLGHGT + P++V+ L +
Sbjct: 137 VTQIGVGDQHSVLLTDG--------GHVYTFGQGIYGQLGHGTRKDLDRPKRVEALVRAQ 188
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEK---GLGLCPNASLTRNEAGDAISPILISGNG 237
+ S+ G T +++ G V SWG + G P+ E G + I
Sbjct: 189 QTITSIGVGFDQTFAINADGVVHSWGRQGPWLGHAAQPDHVKQPQEVGLLKNKAKI---- 244
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
+QVA G HT+L+T DG K++S G+ + G LG GKT+
Sbjct: 245 ---------MQVAAGKQHTLLLTIDG-KVYSMGKNKDGCLGQGKTV 280
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 23/141 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD--RESRLRPKIIETFNQ 116
+++VA G +H + L G+ YS G N +G LG G ++ P I + N
Sbjct: 244 IMQVAAGKQHTLLLTIDGK--------VYSMGKNKDGCLGQGKTVKKETANPMPITSLNN 295
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ + +V G H+ +L + TFG G NG+LGHG T++ VP V+
Sbjct: 296 ---YVITQVAAGEKHSVVLAS--------DGSVLTFGSGSNGRLGHGDTKNQDVPRTVQG 344
Query: 177 LPQYVYLVSVDCGLFHTSVVS 197
+ + ++ G HT V++
Sbjct: 345 V--FDKACAIAAGFEHTIVLT 363
>gi|426255638|ref|XP_004021455.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
[Ovis aries]
Length = 1057
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCKKQASPQLIKSLLGIPFMQI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ +
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLRTQK---I 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 245 VYICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCKKQASPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ ++ G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QIAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RTQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFVNKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|390472682|ref|XP_003734522.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 [Callithrix
jacchus]
Length = 1049
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 107/239 (44%), Gaps = 34/239 (14%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
F V V CG H V ++ G Y+ G N+ GQ LG +SR +P+ +
Sbjct: 31 FINKKVQDVGCGLRHTVFVLDDG--------TVYTCGCNDLGQ--LGHEKSRKKPEQVVA 80
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-HGTTQSALVPE 172
+ + + V+CG HT L ND + W GL +GQLG G+ + VP
Sbjct: 81 LDAQN---IVAVSCGEAHTLAL------NDKGQVYAW--GLDSDGQLGLLGSEECIRVPR 129
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
+K L + +V V CG +H+ +S A +V+ WG K L + + I +L
Sbjct: 130 NIKSLSD-IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLL 188
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G F +QVA G AH+ ++T G ++ WGR + G LG D + P ++
Sbjct: 189 -------GIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGLNDENDRYVPNLL 236
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VQDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVQDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWG---RGRSGVLGTGKTI 283
++WG G+ G+LG+ + I
Sbjct: 106 YAWGLDSDGQLGLLGSEECI 125
>gi|440895825|gb|ELR47919.1| Putative E3 ubiquitin-protein ligase HERC4 [Bos grunniens mutus]
Length = 1056
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCKKQASPQLIKSLLGIPFMQI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ +
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLRTQK---I 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 245 VYICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCKKQASPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ ++ G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QIAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RTQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWG---RGRSGVLGTGKTI 283
++WG G+ G+LG+ + I
Sbjct: 106 YAWGLDSDGQLGLLGSEECI 125
>gi|427794767|gb|JAA62835.1| Putative hect e3 ubiquitin ligase culex quinquefasciatus hect e3
ubiquitin ligase, partial [Rhipicephalus pulchellus]
Length = 1181
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 116/257 (45%), Gaps = 36/257 (14%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P V F V +VACG +H + L++ G Y S GAN+ GQLG DR R
Sbjct: 82 PERVRRFGTRAVREVACGHKHTLVLLANGSVY--------SCGANDFGQLG-QDRSMR-- 130
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-TQ 166
+E S + V CG H+ L+ D + W G NGQLG GT +
Sbjct: 131 --KLEQVAALSAHEIRAVACGEAHSLALS------DAGQVFSW--GCNRNGQLGCGTEEE 180
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD 226
S L P+ +K+L +++V + CG H +++ G+++SWG L L R+ G+
Sbjct: 181 SRLRPKVIKKLAT-LHIVQIACGAVHCLALANNGELFSWGGNASGQL----GLGRDSTGN 235
Query: 227 AISPILISGNGPHGPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
P +S P+ VACGA H+V +T G ++ WGR G LG D
Sbjct: 236 ERLPRRVSH------LVGVPLALVACGAMHSVGLTPSG-TVFVWGRNSCGQLGLSDQRDR 288
Query: 286 FAPAIVLWPPLTEEFKQ 302
P VL P ++ K
Sbjct: 289 LHPT-VLKPLRSQRIKH 304
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 94/209 (44%), Gaps = 28/209 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF---SLVSSFTPSPVWDFHGHTV 59
I + G + LA+ N G L+ WG ++S + G S + P V G +
Sbjct: 195 HIVQIACGAVHCLALANNGELFSWGG----NASGQLGLGRDSTGNERLPRRVSHLVGVPL 250
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
VACG+ H V L +G + WG N+ GQLGL D+ RL P +++
Sbjct: 251 ALVACGAMHSVGLTPSGTVF--------VWGRNSCGQLGLSDQRDRLHPTVLKPLRSQR- 301
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V CG HTA LT + +TFG G GQLGHG + VP +V EL
Sbjct: 302 --IKHVCCGENHTAALT--------ADGGVFTFGAGTYGQLGHGVKVNEAVPRRVVEL-M 350
Query: 180 YVYLVSVDCGLFHT-SVVSSAGDVWSWGM 207
+ + CG HT + +G ++ +G+
Sbjct: 351 GTAISQLSCGRCHTVAYAPQSGRLYIFGL 379
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 134/305 (43%), Gaps = 47/305 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I +V G SLA+ +AG ++ WG C + G S P + +V++
Sbjct: 142 EIRAVACGEAHSLALSDAGQVFSWG-CN-RNGQLGCGTEEESRLRPKVIKKLATLHIVQI 199
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG+ H +AL + GE + SWG N +GQLGLG R+S ++ + +
Sbjct: 200 ACGAVHCLALANNGELF--------SWGGNASGQLGLG-RDSTGNERLPRRVSHLVGVPL 250
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
V CG+ H+ LT P+ + + +G GQLG + L P +K L +
Sbjct: 251 ALVACGAMHSVGLT----PSGTV----FVWGRNSCGQLGLSDQRDRLHPTVLKPL-RSQR 301
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEA---GDAISPILISG 235
+ V CG HT+ +++ G V+++G + G G+ N ++ R G AIS
Sbjct: 302 IKHVCCGENHTAALTADGGVFTFGAGTYGQLGHGVKVNEAVPRRVVELMGTAIS------ 355
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV--LW 293
Q++CG HTV +L+ +G G SG LG G P V LW
Sbjct: 356 ------------QLSCGRCHTVAYAPQSGRLYIFGLGMSGQLGNGTLESSALPVTVPGLW 403
Query: 294 PPLTE 298
+T
Sbjct: 404 HGVTH 408
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 98/211 (46%), Gaps = 38/211 (18%)
Query: 81 GEDLVCYSWGANNNGQLGLG------DRESRL-RPKIIETFNQDSPWAVYEVTCGSFHTA 133
G ++ YSWG NG+LGL D E+ + +P+ + F AV EV CG HT
Sbjct: 48 GAPMLLYSWGLGPNGELGLTQGKDGVDTETPVSQPERVRRFGTR---AVREVACGHKHTL 104
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
+L + ++ G + GQLG + L EQV L + + +V CG H+
Sbjct: 105 VL--------LANGSVYSCGANDFGQLGQDRSMRKL--EQVAALSAH-EIRAVACGEAHS 153
Query: 194 SVVSSAGDVWSWGMEKGLGL---CPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
+S AG V+SWG + L S R + ++ + I VQ+A
Sbjct: 154 LALSDAGQVFSWGCNRNGQLGCGTEEESRLRPKVIKKLATLHI-------------VQIA 200
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
CGA H + + ++G +L+SWG SG LG G+
Sbjct: 201 CGAVHCLALANNG-ELFSWGGNASGQLGLGR 230
>gi|164448576|ref|NP_001070362.2| probable E3 ubiquitin-protein ligase HERC4 [Bos taurus]
gi|296472143|tpg|DAA14258.1| TPA: hect domain and RLD 4 [Bos taurus]
Length = 1057
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G +++
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCKKQASPQLIKSLLGIPFMQI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ +
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLRTQK---I 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 245 VYICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCKKQASPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ ++ G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QIAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RTQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWG---RGRSGVLGTGKTI 283
++WG G+ G+LG+ + I
Sbjct: 106 YAWGLDSDGQLGLLGSEECI 125
>gi|157821577|ref|NP_001101850.1| RCC1 and BTB domain-containing protein 1 [Rattus norvegicus]
gi|149064107|gb|EDM14377.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 1 [Rattus norvegicus]
Length = 531
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGIAP--IQVCTNLLVKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V++ CG + V +G+
Sbjct: 145 ---ADGELFAWGYNNCGQVGSGSTANQPTPRKVTNCLHTKKVVNIACGQTSSMAVLDSGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ HG Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHGVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +P ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGSKNNLLSPTQIM 280
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 96/214 (44%), Gaps = 29/214 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG--NCPLPDSSTEGGFSLVSSFTPSPVWD-FHGH 57
+ Q+ V G S+A+ G L+ WG NC G S + TP V + H
Sbjct: 127 VKQVVEVACGSHHSMALAADGELFAWGYNNC-----GQVGSGSTANQPTPRKVTNCLHTK 181
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +ACG +A++ +GE Y WG N NGQLGLG+ ++L P + +
Sbjct: 182 KVVNIACGQTSSMAVLDSGEVY--------GWGYNGNGQLGLGNNGNQLTPVRVAALH-- 231
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V ++ CG HT LT E + + +G GQLG G+ + L P Q+
Sbjct: 232 -GVCVNQIVCGYAHTLALTD--------EGLLYAWGANTYGQLGTGSKNNLLSPTQIMVE 282
Query: 178 PQYVYLVSVDCGLFHTSVV-SSAGDVWSWGMEKG 210
+ V ++ C HTS + G V+ WG +G
Sbjct: 283 KERVIEIAA-CHSTHTSAAKTQGGHVYMWGQCRG 315
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 107/262 (40%), Gaps = 40/262 (15%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T V VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLV-----KQVVEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
+ +WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 LF--------AWGYNNCGQVGSGSTANQPTPRKVT--NCLHTKKVVNIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDSGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HGVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTV 257
G +++WG T + G L+S K + AC + HT
Sbjct: 250 DEGLLYAWGAN-----------TYGQLGTGSKNNLLSPTQIMVEKERVIEIAACHSTHTS 298
Query: 258 LVTDDGYKLWSWG--RGRSGVL 277
G ++ WG RG+S +L
Sbjct: 299 AAKTQGGHVYMWGQCRGQSVIL 320
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSNCLGTGDNQSTLVPKKLEALCGKRIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+PI + N + V+VACG+ H++ + DG +L++
Sbjct: 103 G------YSQLGNGTTNQGIAPIQVCTN----LLVKQVVEVACGSHHSMALAADG-ELFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAPAIV 291
WG G +G+G T + P V
Sbjct: 152 WGYNNCGQVGSGSTANQPTPRKV 174
>gi|410975285|ref|XP_003994063.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like, partial
[Felis catus]
Length = 621
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCKKQASPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ +
Sbjct: 196 AAGGAHSFVLTLSGAI--------FGWGRNKFGQLGLNDENDRYVPNLLKSLRTQK---I 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 245 VYICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+G+ N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSFGLGG------NGQLGTGSTSNRKSPFTVKGN 344
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 131/298 (43%), Gaps = 50/298 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I +V G +LA+++ G ++ WG ++G L+ S P +
Sbjct: 85 NIVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQ 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 139 IVQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCKKQASPQLIKSL-LG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 190 IPFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL 239
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 -RTQKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV---- 288
Query: 238 PHGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 -----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|260832812|ref|XP_002611351.1| hypothetical protein BRAFLDRAFT_73256 [Branchiostoma floridae]
gi|229296722|gb|EEN67361.1| hypothetical protein BRAFLDRAFT_73256 [Branchiostoma floridae]
Length = 1152
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 30/216 (13%)
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN-QDSPWAVYEV 125
+H +AL S GE Y SWG + G+LG GD SR P ++ + + V +
Sbjct: 249 KHYMALTSEGEVY--------SWGNGDGGRLGHGDTNSREEPTLVRGLSGKQLGRHVVHI 300
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLV 184
CGS ++A +T + +T+G G G+LGHG+++ L P V L + V +
Sbjct: 301 VCGSTYSAAIT--------ADGELFTWGRGNYGRLGHGSSEDQLTPTLVVSLKGRRVIDI 352
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
G T V+ G VWSWG L R + +P +I + Q
Sbjct: 353 CCGSGDAQTLAVTDDGTVWSWGDGD------YGKLGRGGSDGCKTPKIID-----RLQGQ 401
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
D V+V CGA ++ +T G+ +W+WG+G S LG G
Sbjct: 402 DIVRVCCGAQFSLALTKTGH-IWTWGKGDSQRLGHG 436
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 115/272 (42%), Gaps = 37/272 (13%)
Query: 11 GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT----VVKVACGS 66
G +A+ + G ++ WGN D G S P+ V G VV + CGS
Sbjct: 248 GKHYMALTSEGEVYSWGN---GDGGRLGHGDTNSREEPTLVRGLSGKQLGRHVVHIVCGS 304
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
+ A+ + GE ++WG N G+LG G E +L P ++ + V ++
Sbjct: 305 TYSAAITADGE--------LFTWGRGNYGRLGHGSSEDQLTPTLVVSLKGRR---VIDIC 353
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSV 186
CGS L + W++G G+ G+LG G + P+ + L Q +V V
Sbjct: 354 CGSGDAQTLAVTD------DGTVWSWGDGDYGKLGRGGSDGCKTPKIIDRL-QGQDIVRV 406
Query: 187 DCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 246
CG + ++ G +W+WG KG G + G + +
Sbjct: 407 CCGAQFSLALTKTGHIWTWG--KG---------DSQRLGHGTEEHIRFPKQLEGLRGKKV 455
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
V VA G+ H +++T++G +++ WGR G LG
Sbjct: 456 VDVAVGSMHCLVMTEEG-EVYGWGRNDQGQLG 486
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 114/269 (42%), Gaps = 37/269 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+ + G S AI G L+ WG + G S TP+ V G V+ +
Sbjct: 296 HVVHIVCGSTYSAAITADGELFTWGR---GNYGRLGHGSSEDQLTPTLVVSLKGRRVIDI 352
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN-QDSPWA 121
CGS L +D +SWG + G+LG G + PKII+ QD
Sbjct: 353 CCGSGDAQTLAVT------DDGTVWSWGDGDYGKLGRGGSDGCKTPKIIDRLQGQD---- 402
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ V CG+ + LT WT+G G++ +LGHGT + P+Q++ L +
Sbjct: 403 IVRVCCGAQFSLALTK--------TGHIWTWGKGDSQRLGHGTEEHIRFPKQLEGL-RGK 453
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+V V G H V++ G+V+ WG L ++ T+++ P L+ +G
Sbjct: 454 KVVDVAVGSMHCLVMTEEGEVYGWGRNDQGQLGDSSFSTKSD------PTLMPLDG---- 503
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWG 270
+ +ACG A + T G+ WS G
Sbjct: 504 --KSISGIACGPAQSFCWTSTGH--WSVG 528
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 107/240 (44%), Gaps = 42/240 (17%)
Query: 59 VVKVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
V+KVA E H +AL S GE Y SWG + G+LG GD + + +
Sbjct: 191 VLKVAAHPEGKHYMALTSEGEVY--------SWGNGDGGRLGHGDTNVCYKGQKVLVI-- 240
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
VY H LT E +++G G+ G+LGHG T S P V+
Sbjct: 241 -----VYPYHPEGKHYMALTS--------EGEVYSWGNGDGGRLGHGDTNSREEPTLVRG 287
Query: 177 LPQYV---YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
L ++V + CG +++ +++ G++++WG L + D ++P L+
Sbjct: 288 LSGKQLGRHVVHIVCGSTYSAAITADGELFTWGRGN------YGRLGHGSSEDQLTPTLV 341
Query: 234 SGNGPHGPKFQDPVQVACGA--AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + + + CG+ A T+ VTDDG +WSWG G G LG G + P I+
Sbjct: 342 VS-----LKGRRVIDICCGSGDAQTLAVTDDG-TVWSWGDGDYGKLGRGGSDGCKTPKII 395
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 103/235 (43%), Gaps = 42/235 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+++AC ++AL G Y +C+ + + + G P+++E+
Sbjct: 149 VLQLACAERCLIALTKTGRVY-----MCF-YSSESQG------------PQLMESLADKE 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V G + AL + E +++G G+ G+LGHG T ++V
Sbjct: 191 VLKVAAHPEGKHYMALTS---------EGEVYSWGNGDGGRLGHGDTNVCYKGQKV---- 237
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
V + H ++S G+V+SWG G L + +R E P L+ G
Sbjct: 238 -LVIVYPYHPEGKHYMALTSEGEVYSWGNGDGGRLGHGDTNSREE------PTLV--RGL 288
Query: 239 HGPKF-QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G + + V + CG+ ++ +T DG +L++WGRG G LG G + D P +V+
Sbjct: 289 SGKQLGRHVVHIVCGSTYSAAITADG-ELFTWGRGNYGRLGHGSSEDQLTPTLVV 342
>gi|428178434|gb|EKX47309.1| hypothetical protein GUITHDRAFT_137494 [Guillardia theta CCMP2712]
Length = 432
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 140/303 (46%), Gaps = 49/303 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHG-HTVVKV 62
I V GG S+ + +G L C L D+ G L + S + G ++ V
Sbjct: 106 IKKVACGGAHSMIVTESGRLL---TCGLNDN---GQLGLGNLENASEFEEVKGTESIADV 159
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL--RPKIIETFNQDSPW 120
A G H +A G+ Y+WG+N +GQLG D +L P+ I +D+P
Sbjct: 160 AAGFWHTLAASKKGK--------LYAWGSNKHGQLGHHDTAVKLAVEPQEILLL-RDAP- 209
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ +V CGS+H+ LT + +T+G G +G+LGHG+T+ +P++V+ L
Sbjct: 210 -IKQVACGSYHSMALTK--------DGEVYTWGFGAHGRLGHGSTEDEFMPKRVEALVGE 260
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ S+ G ++S VS++G V+ WG L + + D ++P+++
Sbjct: 261 -NISSIHAGFEYSSAVSTSGKVFVWGYGHFY------VLGQGDKKDQLAPVVLD------ 307
Query: 241 PKFQDPV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
F + Q+A G+ H V+ G L++WG G LG G +P I+L P + +
Sbjct: 308 --FPTSIRQLAFGSFHAAAVSHSGM-LFTWGHATHGPLGHG----LKSPNIILEPTVLDA 360
Query: 300 FKQ 302
Q
Sbjct: 361 PAQ 363
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 110/261 (42%), Gaps = 47/261 (18%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ WG + L STE F P V G +
Sbjct: 210 IKQVACGSYHSMALTKDGEVYTWGFGAHGRLGHGSTE------DEFMPKRVEALVGENIS 263
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+ G E+ A+ ++G+ + WG + LG GD++ +L P ++ D P
Sbjct: 264 SIHAGFEYSSAVSTSGKVF--------VWGYGHFYVLGQGDKKDQLAPVVL-----DFPT 310
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALV--PEQVKELP 178
++ ++ GSFH A ++H M +T+G +G LGHG ++ P +
Sbjct: 311 SIRQLAFGSFHAAAVSH--------SGMLFTWGHATHGPLGHGLKSPNIILEPTVLDAPA 362
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Q V CG HT VV+ GDV+S+G+ L + L D P I
Sbjct: 363 QLQNSKQVACGSQHTLVVTGTGDVFSFGLGGQGQLGLGSDL------DHYEPKQI----- 411
Query: 239 HGPKF--QDPVQVACGAAHTV 257
P+F + QVACG H +
Sbjct: 412 --PRFVGKSLRQVACGLFHCI 430
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 50/191 (26%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYV--------YLVSVDCGLFHTSVVSSAGD 201
W++G ++G+ G G A + E +++ P+ V + V CG H+ +V+ +G
Sbjct: 65 WSWGSADHGRGGSGGHTDAPIFEVIQKEPEKVEKPVLPAKLIKKVACGGAHSMIVTESGR 124
Query: 202 VWSWGM----EKGLGLCPNASLTRNEAG-DAISPILIS----------------GNGPHG 240
+ + G+ + GLG NAS G ++I+ + G+ HG
Sbjct: 125 LLTCGLNDNGQLGLGNLENASEFEEVKGTESIADVAAGFWHTLAASKKGKLYAWGSNKHG 184
Query: 241 --------------PK----FQD-PV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
P+ +D P+ QVACG+ H++ +T DG ++++WG G G LG G
Sbjct: 185 QLGHHDTAVKLAVEPQEILLLRDAPIKQVACGSYHSMALTKDG-EVYTWGFGAHGRLGHG 243
Query: 281 KTIDFFAPAIV 291
T D F P V
Sbjct: 244 STEDEFMPKRV 254
>gi|403273885|ref|XP_003928728.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
[Saimiri boliviensis boliviensis]
Length = 1057
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|345325025|ref|XP_001513851.2| PREDICTED: RCC1 and BTB domain-containing protein 1
[Ornithorhynchus anatinus]
Length = 531
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 94/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED + Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 92 EDGIVYAWGHNGYSQLGNGTTNQGIAP--IQICTNLMIKQVTEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
D E W G GQ+G G+T + P +V +VS+ CG + V G+
Sbjct: 145 -DDGEVYAW--GYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVSIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P ++ H +Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPCRVAA--LHSVCV---LQIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKSNLLSPAQIM 280
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 95/214 (44%), Gaps = 29/214 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG--NCPLPDSSTEGGFSLVSSFTPSPVWD-FHGH 57
+ Q+ V G S+A+ + G ++ WG NC G S + TP V + H
Sbjct: 127 IKQVTEVACGSHHSMALADDGEVYAWGYNNC-----GQVGSGSTANQPTPRKVTNCLHIK 181
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +ACG +A++ GE Y WG N NGQLGLG+ ++L P + +
Sbjct: 182 RVVSIACGQTSSMAVLDNGEVY--------GWGYNGNGQLGLGNNGNQLTPCRVAALHS- 232
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V ++ CG HT LT E + + +G GQLG G + L P Q+
Sbjct: 233 --VCVLQIVCGYAHTLALTD--------EGLLYAWGANTYGQLGTGNKSNLLSPAQIMVE 282
Query: 178 PQYVYLVSVDCGLFHTSVV-SSAGDVWSWGMEKG 210
+ V ++ C HTS + G V+ WG +G
Sbjct: 283 KERVVEIAA-CHSAHTSAAKTQGGHVYMWGQCRG 315
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 109/280 (38%), Gaps = 44/280 (15%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +VACGS H +AL GE Y +WG NN GQ+G G ++ P+ + N
Sbjct: 130 VTEVACGSHHSMALADDGEVY--------AWGYNNCGQVGSGSTANQPTPRKVT--NCLH 179
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG T D E W G NGQLG G + L P +V L
Sbjct: 180 IKRVVSIACGQ------TSSMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPCRVAAL- 230
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
V ++ + CG HT ++ G +++WG T + G L+S
Sbjct: 231 HSVCVLQIVCGYAHTLALTDEGLLYAWGAN-----------TYGQLGTGNKSNLLSPAQI 279
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPA 289
K + AC +AHT G ++ WG RG+S L T FA
Sbjct: 280 MVEKERVVEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVTLPHLTHFSCTDDVFACFATP 339
Query: 290 IVLWPPLTEEFKQDELNTGGLDDEIKTKDLEGAEERDEKL 329
V W L+ E +D L E K+ + E D K
Sbjct: 340 AVTWRLLSVE-HEDFLTVA----ESLKKEFDSPETADLKF 374
>gi|403273883|ref|XP_003928727.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
[Saimiri boliviensis boliviensis]
Length = 1049
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|255544003|ref|XP_002513064.1| Ran GTPase binding protein, putative [Ricinus communis]
gi|223548075|gb|EEF49567.1| Ran GTPase binding protein, putative [Ricinus communis]
Length = 1096
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 128/294 (43%), Gaps = 38/294 (12%)
Query: 7 VKAGGMMSLAIDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVK 61
V G S A+ +G L+ WG NC L E S++ P + G V
Sbjct: 362 VACGEYHSCAVTLSGDLYTWGGSSHNCGLLGYRNEA-----SNWVPKKLNGPLEGIHVAA 416
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
V+CG H + S+G+ +++G G LG GDR S P+ +E+
Sbjct: 417 VSCGPWHTAVVTSSGQ--------LFTFGDGTFGVLGHGDRRSVSTPREVESLKG---LR 465
Query: 122 VYEVTCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
CG +HTA ++ ++ +T+G G+ G+LGHG +S LVP V L
Sbjct: 466 TVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGDKESRLVPTCVAAL 525
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ + V CG T +++ G V++ G P N D P+ + G
Sbjct: 526 VEPNF-CQVACGHSMTVALTTTGHVYTMG-------SPVYGQLGNPQADGKLPVRVEGK- 576
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F + ++ CGA H ++T ++++WG+G +G LG G T D +P IV
Sbjct: 577 -LSKNFVE--ELDCGAYHVAVLTSR-TEVYTWGKGANGRLGHGDTDDRSSPTIV 626
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 111/270 (41%), Gaps = 48/270 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
+ +V G + + ++G L+ +G +G F ++ S TP V G
Sbjct: 413 HVAAVSCGPWHTAVVTSSGQLFTFG---------DGTFGVLGHGDRRSVSTPREVESLKG 463
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLV-------CYSWGANNNGQLGLGDRESRLRPK 109
V+ ACG H A+V E G ++WG + G+LG GD+ESRL P
Sbjct: 464 LRTVRAACGVWHTAAVV---EVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGDKESRLVPT 520
Query: 110 IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
+ + + +V CG T LT +T G GQLG+ L
Sbjct: 521 CVAALVEPN---FCQVACGHSMTVALT--------TTGHVYTMGSPVYGQLGNPQADGKL 569
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
P +V+ ++ +DCG +H +V++S +V++WG KG N L + D S
Sbjct: 570 -PVRVEGKLSKNFVEELDCGAYHVAVLTSRTEVYTWG--KGA----NGRLGHGDTDDRSS 622
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLV 259
P ++ K + V CG + T +
Sbjct: 623 PTIV-----EALKDKQVKSVVCGTSFTAAI 647
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 108/260 (41%), Gaps = 43/260 (16%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES 104
SF P + V +ACG H + GE + SWG G+LG G
Sbjct: 293 SFVPKALESAVLLDVQTIACGRRHAALVTKQGEVF--------SWGEELGGRLGHGVDSD 344
Query: 105 RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGH 162
L PK+++ + V V CG +H+ +T L +T+G + G LG+
Sbjct: 345 VLHPKLVDGLKNTN---VELVACGEYHSCAVT--------LSGDLYTWGGSSHNCGLLGY 393
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
S VP+++ + +++ +V CG +HT+VV+S+G ++++G + G+ L
Sbjct: 394 RNEASNWVPKKLNGPLEGIHVAAVSCGPWHTAVVTSSGQLFTFG-DGTFGV-----LGHG 447
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGR 271
+ +P + K V+ ACG HT V + KL++WG
Sbjct: 448 DRRSVSTPREV-----ESLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGD 502
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G P V
Sbjct: 503 GDKGRLGHGDKESRLVPTCV 522
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 61/150 (40%), Gaps = 20/150 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW---DFHGHTV 59
C V G M++A+ G ++ G S G + PV + V
Sbjct: 529 NFCQVACGHSMTVALTTTGHVYTMG------SPVYGQLGNPQADGKLPVRVEGKLSKNFV 582
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++ CG+ HV L S E Y +WG NG+LG GD + R P I+E
Sbjct: 583 EELDCGAYHVAVLTSRTEVY--------TWGKGANGRLGHGDTDDRSSPTIVEALKDKQ- 633
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
V V CG+ TA + K + + +SMC
Sbjct: 634 --VKSVVCGTSFTAAICLHKWVSGIDQSMC 661
>gi|449444879|ref|XP_004140201.1| PREDICTED: uncharacterized protein LOC101207486 [Cucumis sativus]
gi|449480975|ref|XP_004156044.1| PREDICTED: uncharacterized LOC101207486 [Cucumis sativus]
Length = 1104
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 130/292 (44%), Gaps = 34/292 (11%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ +G L+ WG+ + G + VS + P + G V +ACG
Sbjct: 365 VSCGEYHTCAVTLSGDLYTWGDGTY-NFGLLGHGNEVSHWIPKKINGPLEGIHVSSIACG 423
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ +++G G LG GDR S P+ +E+
Sbjct: 424 PWHTAVVTSAGQ--------LFTFGDGTFGVLGHGDRGSVTMPREVESLKG---LRTVRA 472
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL--PQ 179
CG +HTA ++ ++ +T+G G+ G+LGHG ++ LVP V L P
Sbjct: 473 ACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGDKETKLVPTCVAALVDPN 532
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ V CG T ++++G V++ G P N D P+ + G
Sbjct: 533 FC---RVSCGHSMTVALTTSGHVYTMG-------SPVYGQLGNPHADGKVPVRVEGK--L 580
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F + ++ACGA H ++T ++++WG+G +G LG G T D +P +V
Sbjct: 581 SKSFVE--EIACGAYHVAVLTSR-TEVYTWGKGANGRLGHGDTDDRNSPTLV 629
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 108/246 (43%), Gaps = 43/246 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +ACG H + GE + +WG + G+LG G L+PK+++ +
Sbjct: 310 VQNIACGGRHAALVTKQGEIF--------TWGEESGGRLGHGVDSDVLQPKLVDALGNTN 361
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKE 176
+ V+CG +HT +T L +T+G G G LGHG S +P+++
Sbjct: 362 ---IELVSCGEYHTCAVT--------LSGDLYTWGDGTYNFGLLGHGNEVSHWIPKKING 410
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ +++ S+ CG +HT+VV+SAG ++++G + G+ L + G P +
Sbjct: 411 PLEGIHVSSIACGPWHTAVVTSAGQLFTFG-DGTFGV-----LGHGDRGSVTMPREV--- 461
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGKTIDF 285
K V+ ACG HT V + KL++WG G G LG G
Sbjct: 462 --ESLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGDKETK 519
Query: 286 FAPAIV 291
P V
Sbjct: 520 LVPTCV 525
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 31/180 (17%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80
G L+ WG+ D G + P+ V +V+CG VAL ++G Y
Sbjct: 498 GKLFTWGD---GDKGRLGHGDKETKLVPTCVAALVDPNFCRVSCGHSMTVALTTSGHVY- 553
Query: 81 GEDLVCYSWGANNNGQLGL----GDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLT 136
+ G+ GQLG G R+ K+ ++F V E+ CG++H A+LT
Sbjct: 554 -------TMGSPVYGQLGNPHADGKVPVRVEGKLSKSF-------VEEIACGAYHVAVLT 599
Query: 137 HRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
R + +T+G G NG+LGHG T P V+ L + S+ CG T+ +
Sbjct: 600 SR--------TEVYTWGKGANGRLGHGDTDDRNSPTLVEALKDK-QVKSIACGTNFTAAI 650
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 61/150 (40%), Gaps = 20/150 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW---DFHGHTV 59
C V G M++A+ +G ++ G S G + PV V
Sbjct: 532 NFCRVSCGHSMTVALTTSGHVYTMG------SPVYGQLGNPHADGKVPVRVEGKLSKSFV 585
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++ACG+ HV L S E Y +WG NG+LG GD + R P ++E
Sbjct: 586 EEIACGAYHVAVLTSRTEVY--------TWGKGANGRLGHGDTDDRNSPTLVEALKDKQ- 636
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
V + CG+ TA + K + +SMC
Sbjct: 637 --VKSIACGTNFTAAICLHKWVSGFDQSMC 664
>gi|427780149|gb|JAA55526.1| Putative hect e3 ubiquitin ligase culex quinquefasciatus hect e3
ubiquitin ligase [Rhipicephalus pulchellus]
Length = 1175
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 116/257 (45%), Gaps = 36/257 (14%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P V F V +VACG +H + L++ G Y S GAN+ GQLG DR R
Sbjct: 76 PERVRRFGTRAVREVACGHKHTLVLLANGSVY--------SCGANDFGQLG-QDRSMR-- 124
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-TQ 166
+E S + V CG H+ L+ D + W G NGQLG GT +
Sbjct: 125 --KLEQVAALSAHEIRAVACGEAHSLALS------DAGQVFSW--GCNRNGQLGCGTEEE 174
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD 226
S L P+ +K+L +++V + CG H +++ G+++SWG L L R+ G+
Sbjct: 175 SRLRPKVIKKLAT-LHIVQIACGAVHCLALANNGELFSWGGNASGQL----GLGRDSTGN 229
Query: 227 AISPILISGNGPHGPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
P +S P+ VACGA H+V +T G ++ WGR G LG D
Sbjct: 230 ERLPRRVSH------LVGVPLALVACGAMHSVGLTPSG-TVFVWGRNSCGQLGLSDQRDR 282
Query: 286 FAPAIVLWPPLTEEFKQ 302
P VL P ++ K
Sbjct: 283 LHPT-VLKPLRSQRIKH 298
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 94/209 (44%), Gaps = 28/209 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF---SLVSSFTPSPVWDFHGHTV 59
I + G + LA+ N G L+ WG ++S + G S + P V G +
Sbjct: 189 HIVQIACGAVHCLALANNGELFSWGG----NASGQLGLGRDSTGNERLPRRVSHLVGVPL 244
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
VACG+ H V L +G + WG N+ GQLGL D+ RL P +++
Sbjct: 245 ALVACGAMHSVGLTPSGTVF--------VWGRNSCGQLGLSDQRDRLHPTVLKPLRSQR- 295
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V CG HTA LT + +TFG G GQLGHG + VP +V EL
Sbjct: 296 --IKHVCCGENHTAALT--------ADGGVFTFGAGTYGQLGHGVKVNEAVPRRVVEL-M 344
Query: 180 YVYLVSVDCGLFHT-SVVSSAGDVWSWGM 207
+ + CG HT + +G ++ +G+
Sbjct: 345 GTAISQLSCGRCHTVAYAPQSGRLYIFGL 373
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 134/305 (43%), Gaps = 47/305 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I +V G SLA+ +AG ++ WG C + G S P + +V++
Sbjct: 136 EIRAVACGEAHSLALSDAGQVFSWG-CN-RNGQLGCGTEEESRLRPKVIKKLATLHIVQI 193
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG+ H +AL + GE + SWG N +GQLGLG R+S ++ + +
Sbjct: 194 ACGAVHCLALANNGELF--------SWGGNASGQLGLG-RDSTGNERLPRRVSHLVGVPL 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
V CG+ H+ LT P+ + + +G GQLG + L P +K L +
Sbjct: 245 ALVACGAMHSVGLT----PSGTV----FVWGRNSCGQLGLSDQRDRLHPTVLKPL-RSQR 295
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEA---GDAISPILISG 235
+ V CG HT+ +++ G V+++G + G G+ N ++ R G AIS
Sbjct: 296 IKHVCCGENHTAALTADGGVFTFGAGTYGQLGHGVKVNEAVPRRVVELMGTAIS------ 349
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV--LW 293
Q++CG HTV +L+ +G G SG LG G P V LW
Sbjct: 350 ------------QLSCGRCHTVAYAPQSGRLYIFGLGMSGQLGNGTLESSALPVTVPGLW 397
Query: 294 PPLTE 298
+T
Sbjct: 398 HGVTH 402
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 98/211 (46%), Gaps = 38/211 (18%)
Query: 81 GEDLVCYSWGANNNGQLGLG------DRESRL-RPKIIETFNQDSPWAVYEVTCGSFHTA 133
G ++ YSWG NG+LGL D E+ + +P+ + F AV EV CG HT
Sbjct: 42 GAPMLLYSWGLGPNGELGLTQGKDGVDTETPVSQPERVRRFGTR---AVREVACGHKHTL 98
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
+L + ++ G + GQLG + L EQV L + + +V CG H+
Sbjct: 99 VL--------LANGSVYSCGANDFGQLGQDRSMRKL--EQVAALSAH-EIRAVACGEAHS 147
Query: 194 SVVSSAGDVWSWGMEKGLGL---CPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
+S AG V+SWG + L S R + ++ + I VQ+A
Sbjct: 148 LALSDAGQVFSWGCNRNGQLGCGTEEESRLRPKVIKKLATLHI-------------VQIA 194
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
CGA H + + ++G +L+SWG SG LG G+
Sbjct: 195 CGAVHCLALANNG-ELFSWGGNASGQLGLGR 224
>gi|405954130|gb|EKC21653.1| Putative E3 ubiquitin-protein ligase HERC1 [Crassostrea gigas]
Length = 2154
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 120/269 (44%), Gaps = 34/269 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+LA+ +G ++ WG+ D G + P + G V++++CG +H +
Sbjct: 1898 TLAVTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVIQLSCGFKHSAVVT 1954
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G+ + ++G + G+LGLG ++ P + + V CG HT
Sbjct: 1955 ADGKLF--------TFGNGDYGRLGLGTTTNKKVPTRVVALESHQ---IGYVACGLNHTL 2003
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ + W FG G+ G+LG G T +P ++K L +V + V CG +
Sbjct: 2004 CVSADG-------TNVWAFGDGDFGKLGQGNTVGKHLPTKIKALQGHV-IKKVACGTQFS 2055
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+S G V++WG E+ +G P+ N ++ + G +D V CGA
Sbjct: 2056 VALSKYGKVFTWGQERLIGQ-PDTRGGSNCQPQEVASL-------SGYFIED---VVCGA 2104
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
HT+++T DG +W WG G LG G T
Sbjct: 2105 EHTLVLTSDG-DVWGWGSNSEGQLGLGHT 2132
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 20/146 (13%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-- 207
+++G G+ G+LGHG + P Q++ L Q ++ + CG H++VV++ G ++++G
Sbjct: 1908 FSWGDGDYGKLGHGNSDRQRRPRQIEAL-QGEEVIQLSCGFKHSAVVTADGKLFTFGNGD 1966
Query: 208 --EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
GLG N + P + H + VACG HT+ V+ DG
Sbjct: 1967 YGRLGLGTTTNKKV----------PTRVVALESHQIGY-----VACGLNHTLCVSADGTN 2011
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIV 291
+W++G G G LG G T+ P +
Sbjct: 2012 VWAFGDGDFGKLGQGNTVGKHLPTKI 2037
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 30/216 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + G S + G L+ +GN D G + + P+ V H + V
Sbjct: 1939 EVIQLSCGFKHSAVVTADGKLFTFGN---GDYGRLGLGTTTNKKVPTRVVALESHQIGYV 1995
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG H + + + G +++G + G+LG G+ + P I+ +
Sbjct: 1996 ACGLNHTLCVSADGTNV-------WAFGDGDFGKLGQGNTVGKHLPTKIKALQGH---VI 2045
Query: 123 YEVTCGS-FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ--SALVPEQVKELPQ 179
+V CG+ F AL + K F G+ +G T+ S P++V L
Sbjct: 2046 KKVACGTQFSVALSKYGK-----------VFTWGQERLIGQPDTRGGSNCQPQEVASLSG 2094
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGL 213
Y ++ V CG HT V++S GDVW WG E LGL
Sbjct: 2095 Y-FIEDVVCGAEHTLVLTSDGDVWGWGSNSEGQLGL 2129
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 18/112 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPL---PDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ WG L PD T GG S+ P V G+ +
Sbjct: 2045 IKKVACGTQFSVALSKYGKVFTWGQERLIGQPD--TRGG----SNCQPQEVASLSGYFIE 2098
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-PKII 111
V CG+EH + L S G+ + WG+N+ GQLGLG S +R P+++
Sbjct: 2099 DVVCGAEHTLVLTSDGDVW--------GWGSNSEGQLGLGHTNSPVREPQLV 2142
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 28/208 (13%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
+ WG+ NGQ+ G R + + P + +F+ ++ CG T ++ +
Sbjct: 1804 FLWGSGRNGQMCEGGRGAFV-PVRVPSFS-----CSQQIVCGQNCTFVVQN--------N 1849
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY--LVSVDCGLFHTSVVSSAGDVWS 204
G G G+LG G + + + +V L + HT V+ +G+V+S
Sbjct: 1850 GTVLACGEGSYGRLGQGNSDDLHSLTAISSIQGFVVTQLATSVGSDGHTLAVTESGEVFS 1909
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG + G + + R I + + ++ +Q++CG H+ +VT DG
Sbjct: 1910 WG-DGDYGKLGHGNSDRQRRPRQIEAL----------QGEEVIQLSCGFKHSAVVTADG- 1957
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
KL+++G G G LG G T + P V+
Sbjct: 1958 KLFTFGNGDYGRLGLGTTTNKKVPTRVV 1985
>gi|402880677|ref|XP_003903924.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
[Papio anubis]
Length = 1057
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIIQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
++VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 IQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I +QVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------IQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|383872260|ref|NP_001244507.1| probable E3 ubiquitin-protein ligase HERC4 [Macaca mulatta]
gi|355782894|gb|EHH64815.1| hypothetical protein EGM_18130 [Macaca fascicularis]
gi|380786489|gb|AFE65120.1| putative E3 ubiquitin-protein ligase HERC4 isoform a [Macaca
mulatta]
gi|383411599|gb|AFH29013.1| putative E3 ubiquitin-protein ligase HERC4 isoform a [Macaca
mulatta]
Length = 1057
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIIQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
++VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 IQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I +QVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------IQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|402880675|ref|XP_003903923.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
[Papio anubis]
Length = 1049
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIIQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
++VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 IQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I +QVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------IQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|355562563|gb|EHH19157.1| hypothetical protein EGK_19807 [Macaca mulatta]
Length = 1054
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIIQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
++VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 IQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I +QVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------IQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|395521017|ref|XP_003764618.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Sarcophilus
harrisii]
Length = 531
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 94/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGIAP--IQVCTNLLIKQVIEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +VS+ CG + V G+
Sbjct: 145 ---ADGEVYAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVSIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P ++ H +Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPCRVA--ALHSVCV---LQIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKSNLLSPAQIM 280
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 94/214 (43%), Gaps = 29/214 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG--NCPLPDSSTEGGFSLVSSFTPSPVWD-FHGH 57
+ Q+ V G S+A+ G ++ WG NC G S + TP V + H
Sbjct: 127 IKQVIEVACGSHHSMALAADGEVYAWGYNNC-----GQVGSGSTANQPTPRKVTNCLHIK 181
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +ACG +A++ GE Y WG N NGQLGLG+ ++L P + +
Sbjct: 182 RVVSIACGQTSSMAVLDNGEVY--------GWGYNGNGQLGLGNNGNQLTPCRVAALHS- 232
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V ++ CG HT LT E + + +G GQLG G + L P Q+
Sbjct: 233 --VCVLQIVCGYAHTLALTD--------EGLLYAWGANTYGQLGTGNKSNLLSPAQIMVE 282
Query: 178 PQYVYLVSVDCGLFHTSVV-SSAGDVWSWGMEKG 210
+ V ++ C HTS + G V+ WG +G
Sbjct: 283 KERVVEIAA-CHSAHTSAAKTQGGHVYMWGQCRG 315
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 122/310 (39%), Gaps = 47/310 (15%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + V++VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLI-----KQVIEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
Y +WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 VY--------AWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKRVVSIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V ++ + CG HT ++
Sbjct: 193 SMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPCRVAAL-HSVCVLQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTV 257
G +++WG T + G L+S K + AC +AHT
Sbjct: 250 DEGLLYAWGAN-----------TYGQLGTGNKSNLLSPAQIMVEKERVVEIAACHSAHTS 298
Query: 258 LVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNTG 308
G ++ WG RG+S +L T FA V W L+ E +
Sbjct: 299 AAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACFATPAVTWRLLSVEHEDFLTVAE 358
Query: 309 GLDDEIKTKD 318
L E + D
Sbjct: 359 SLKKEFDSPD 368
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS +VP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNCSNCLGTGDNQSTIVPKKLEALCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+PI + N + ++VACG+ H++ + DG ++++
Sbjct: 103 G------YSQLGNGTTNQGIAPIQVCTN----LLIKQVIEVACGSHHSMALAADG-EVYA 151
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 152 WGYNNCGQVGSGSTANQPTP 171
>gi|196012955|ref|XP_002116339.1| hypothetical protein TRIADDRAFT_64264 [Trichoplax adhaerens]
gi|190580930|gb|EDV21009.1| hypothetical protein TRIADDRAFT_64264 [Trichoplax adhaerens]
Length = 514
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 25/207 (12%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
M ++ GG ++A+ G ++ WG D G + + P+ + + V
Sbjct: 210 MVTTVAIHPGGRHAMALTAEGKVYSWG---CGDRGQLGHGNTLGYLDPTLIDELKSKEVT 266
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
K+ACG+ H +A++S G+ +SWG +NG LG G+ ++L PK I + N
Sbjct: 267 KIACGAMHSIAVLSDGKI--------FSWGDGSNGALGHGNNLAQLLPKKIMSLNGKH-- 316
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKELPQ 179
+ V CG +T + +D+ W++GLG NG+LG+G S +P +++ L
Sbjct: 317 -IMAVACGECYTIAVAG----DDV-----WSWGLGGNGELGYGVEMPSYYMPTKIEAL-F 365
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ + +V CG + VS+ G VW+WG
Sbjct: 366 FKGITNVACGYATSFAVSANGKVWAWG 392
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 104/232 (44%), Gaps = 34/232 (14%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
T V + G H +AL + G+ Y SWG + GQLG G+ L P +I+
Sbjct: 212 TTVAIHPGGRHAMALTAEGKVY--------SWGCGDRGQLGHGNTLGYLDPTLIDELKSK 263
Query: 118 SPWAVYEVTCGSFHT-ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V ++ CG+ H+ A+L+ K +++G G NG LGHG + L+P+++
Sbjct: 264 E---VTKIACGAMHSIAVLSDGK---------IFSWGDGSNGALGHGNNLAQLLPKKIMS 311
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L ++++V CG +T V+ DVWSWG+ L + I +
Sbjct: 312 L-NGKHIMAVACGECYTIAVA-GDDVWSWGLGGNGELGYGVEMPSYYMPTKIEALF---- 365
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
F+ VACG A + V+ +G K+W+WG G LG G P
Sbjct: 366 ------FKGITNVACGYATSFAVSANG-KVWAWGSGDRFRLGLGNEKVIVKP 410
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 37/222 (16%)
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ACG + + + G + + G + G LGLG+ + P+ I Q P
Sbjct: 162 IACGYDSLFVVSRNGGIF--------ACGKGHMGCLGLGNCDDVNVPRQIP---QLLPVM 210
Query: 122 VYEVTC--GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V V G H LT E +++G G+ GQLGHG T L P + EL +
Sbjct: 211 VTTVAIHPGGRHAMALTA--------EGKVYSWGCGDRGQLGHGNTLGYLDPTLIDEL-K 261
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTR-NEAGDAISPILISGNGP 238
+ + CG H+ V S G ++SWG N +L N + ++S NG
Sbjct: 262 SKEVTKIACGAMHSIAVLSDGKIFSWGDGS------NGALGHGNNLAQLLPKKIMSLNGK 315
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
H + VACG +T+ V D +WSWG G +G LG G
Sbjct: 316 H------IMAVACGECYTIAVAGD--DVWSWGLGGNGELGYG 349
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 91/208 (43%), Gaps = 24/208 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + G M S+A+ + G ++ WG+ + G + ++ P + +G ++ V
Sbjct: 264 EVTKIACGAMHSIAVLSDGKIFSWGD---GSNGALGHGNNLAQLLPKKIMSLNGKHIMAV 320
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPWA 121
ACG + +A+ G+D+ +SWG NG+LG G + S P IE
Sbjct: 321 ACGECYTIAVA-------GDDV--WSWGLGGNGELGYGVEMPSYYMPTKIEALFFK---G 368
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ V CG + ++ + W +G G+ +LG G + + P +++ +
Sbjct: 369 ITNVACGYATSFAVSANGK--------VWAWGSGDRFRLGLGNEKVIVKPREIQGDLKGK 420
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+ V LFH + G V+ WG ++
Sbjct: 421 KIKRVVASLFHALAIDENGQVYIWGSQE 448
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 24/124 (19%)
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ CG VVS G +++ G GLG C + ++ R + P++++
Sbjct: 162 IACGYDSLFVVSRNGGIFACGKGHMGCLGLGNCDDVNVPRQIP--QLLPVMVT------- 212
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFK 301
V + G H + +T +G K++SWG G G LG G T+ + P ++ +E K
Sbjct: 213 ----TVAIHPGGRHAMALTAEG-KVYSWGCGDRGQLGHGNTLGYLDPTLI------DELK 261
Query: 302 QDEL 305
E+
Sbjct: 262 SKEV 265
>gi|118345495|ref|XP_976578.1| regulator of chromosome condensation (RCC1) [Tetrahymena
thermophila]
gi|89287995|gb|EAR85983.1| regulator of chromosome condensation (RCC1) [Tetrahymena
thermophila SB210]
Length = 722
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 36/229 (15%)
Query: 53 DFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL-GDRESRLRPKII 111
D+ V V S+ +A+ G +SWG +LG + ++ P I
Sbjct: 209 DYWEGNVESVKACSDFTIAIDKQGR--------IFSWGKGGFNRLGYKAEIVNQKHPLQI 260
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
E+ S + + + GSFH+A +T+ R +T+G NGQLGHG ++ + P
Sbjct: 261 ESL---SKQQIIQFSLGSFHSAAITNNGR--------LYTWGRDSNGQLGHGQAKADIFP 309
Query: 172 EQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPI 231
++V+ L Q Y+VSV CG HT +S +++SWG+ G AS E + P
Sbjct: 310 KEVQAL-QNTYIVSVACGEGHTLALSKNNELFSWGLNSS-GQLGRAS----ENLKSSDPK 363
Query: 232 LISGNGPHGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
IS F+D Q+ACG+ H++++ DG ++SWG + G LG
Sbjct: 364 KISF-------FEDKSIKQIACGSKHSLVLLQDG-TVYSWGSNQYGQLG 404
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 37/211 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFS-------LVSSFTPSPVWDFHG 56
+ SVKA ++AID G ++ WG +GGF+ +V+ P +
Sbjct: 215 VESVKACSDFTIAIDKQGRIFSWG---------KGGFNRLGYKAEIVNQKHPLQIESLSK 265
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+++ + GS H A+ + G Y+WG ++NGQLG G ++ + PK ++
Sbjct: 266 QQIIQFSLGSFHSAAITNNGR--------LYTWGRDSNGQLGHGQAKADIFPKEVQALQN 317
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVK 175
+ V CG HT L+ + N++ +++GL +GQLG + + P+++
Sbjct: 318 T---YIVSVACGEGHTLALS---KNNEL-----FSWGLNSSGQLGRASENLKSSDPKKIS 366
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ + CG H+ V+ G V+SWG
Sbjct: 367 FFEDKS-IKQIACGSKHSLVLLQDGTVYSWG 396
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 126/307 (41%), Gaps = 38/307 (12%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDS---STEGGFSLVSSFTPS------PV 51
+S I + G S AID ++ WG C L S E + + P V
Sbjct: 27 ISNIVKIVCGANHSYAIDTNFEVYAWG-CNLGRKLGLSDEYYNQIFQADIPEQIKIPVKV 85
Query: 52 WDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
+ + ++ G+ H A + E Y WG G+LG + + P+I
Sbjct: 86 TELSNKKINNISTGTNHSFA-------WSTELNQVYCWGIGEYGKLGNKESKDLQYPEIF 138
Query: 112 ETFNQDS--PWAVYEVTCGSFHT-ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA 168
Q W + E++CG HT A++ N ++ + +G + QLG T ++
Sbjct: 139 NGLKQPEGIQWEISEISCGENHTVAVIKQINVNNSQSQNKLYVWGSSSDWQLGIDTGKTD 198
Query: 169 LVPEQVKELPQY----VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA 224
V + ++ P Y V V C F T + G ++SWG KG G N + E
Sbjct: 199 YVNQPLEMSPDYWEGNVESVKA-CSDF-TIAIDKQGRIFSWG--KG-GF--NRLGYKAEI 251
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT-I 283
+ P+ I Q +Q + G+ H+ +T++G +L++WGR +G LG G+
Sbjct: 252 VNQKHPLQIESLSK-----QQIIQFSLGSFHSAAITNNG-RLYTWGRDSNGQLGHGQAKA 305
Query: 284 DFFAPAI 290
D F +
Sbjct: 306 DIFPKEV 312
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFTPSPVWDFHGHTVVKV 62
I SV G +LA+ L+ WG L S G S + S P + F ++ ++
Sbjct: 320 IVSVACGEGHTLALSKNNELFSWG---LNSSGQLGRASENLKSSDPKKISFFEDKSIKQI 376
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
ACGS+H + L+ +D YSWG+N GQLG D++S + I + N D
Sbjct: 377 ACGSKHSLVLL--------QDGTVYSWGSNQYGQLGF-DQDSNAQNTIASSQNVD 422
>gi|408501216|ref|YP_006865135.1| RCC1-like protein [Bifidobacterium asteroides PRL2011]
gi|408466040|gb|AFU71569.1| RCC1-like protein [Bifidobacterium asteroides PRL2011]
Length = 1086
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 125/307 (40%), Gaps = 55/307 (17%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPS-------PVWDF 54
V AGG SLA+ + G + WG L D + G + V TP P DF
Sbjct: 623 VQVSAGGQHSLALGSDGNAYAWGYNVQGQLGDGTGTGRNTPVRVKTPDRKTYPDLPA-DF 681
Query: 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIET 113
T V+V+ G +H +AL G D Y+WG N NGQLG G + R P +ET
Sbjct: 682 ---TYVQVSAGGQHSLAL--------GSDGNAYAWGYNVNGQLGGGTSNDYRRTPVRVET 730
Query: 114 FNQ----DSP--WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
++ D P + +V+ G +H+ L + W +G GQLG GT +
Sbjct: 731 PDRKTYPDLPADFTYVQVSAGRYHSLALGS--------DGNAWAWGSNFEGQLGDGTGTN 782
Query: 168 ALVPEQVK--------ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
P VK +LP V V G H+ + S G+ W+WG L S
Sbjct: 783 RNTPVMVKTPDRSTYPDLPADFTYVQVSAGWLHSLALGSDGNAWAWGRNTNGQLGDGTSG 842
Query: 220 TRNEAGDAISPILIS----GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSG 275
T D +P+ + P PK QV+ H++ V DG W+WG G
Sbjct: 843 T-----DRTAPVRVKMPDRNTYPDLPKDFTYAQVSAEGDHSLAVGSDG-NAWAWGCNFYG 896
Query: 276 VLGTGKT 282
LG T
Sbjct: 897 PLGNNTT 903
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 131/315 (41%), Gaps = 51/315 (16%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWG-NCPLPDSSTEGGFSLVSSFTPSPV------------ 51
V AGG SLA+ + G + WG N + GG S TP V
Sbjct: 684 VQVSAGGQHSLALGSDGNAYAWGYNV---NGQLGGGTSNDYRRTPVRVETPDRKTYPDLP 740
Query: 52 WDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
DF T V+V+ G H +AL G D ++WG+N GQLG G +R P ++
Sbjct: 741 ADF---TYVQVSAGRYHSLAL--------GSDGNAWAWGSNFEGQLGDGTGTNRNTPVMV 789
Query: 112 ETFNQ----DSP--WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
+T ++ D P + +V+ G H+ L + W +G NGQLG GT+
Sbjct: 790 KTPDRSTYPDLPADFTYVQVSAGWLHSLALGS--------DGNAWAWGRNTNGQLGDGTS 841
Query: 166 QS-ALVPEQVK--------ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPN 216
+ P +VK +LP+ V H+ V S G+ W+WG L N
Sbjct: 842 GTDRTAPVRVKMPDRNTYPDLPKDFTYAQVSAEGDHSLAVGSDGNAWAWGCNFYGPLGNN 901
Query: 217 ASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGV 276
+ + +A + S N K Q QV+ G +++ + DG ++WG SG
Sbjct: 902 TTNWQGDANPVPKRVRDSANPTDKSKGQQATQVSGGYHYSLALGSDG-NAYAWGYNSSGQ 960
Query: 277 LGTGKTIDFFAPAIV 291
LG G T D P V
Sbjct: 961 LGDGTTNDKSVPVPV 975
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 103/256 (40%), Gaps = 42/256 (16%)
Query: 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKII-----ETFNQDSP--WAVYEVTCGSFHTA 133
G D Y+WG N NGQLG G R P ++ +T+ D P + +V+ G H+
Sbjct: 575 GSDGNAYAWGYNYNGQLGDGTSTERHAPVMVWMPDRKTY-PDLPADFTYVQVSAGGQHSL 633
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK--------ELPQYVYLVS 185
L + + +G GQLG GT P +VK +LP V
Sbjct: 634 ALGS--------DGNAYAWGYNVQGQLGDGTGTGRNTPVRVKTPDRKTYPDLPADFTYVQ 685
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD-AISPILIS----GNGPHG 240
V G H+ + S G+ ++WG N L + D +P+ + P
Sbjct: 686 VSAGGQHSLALGSDGNAYAWGYNV------NGQLGGGTSNDYRRTPVRVETPDRKTYPDL 739
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV------LWP 294
P VQV+ G H++ + DG W+WG G LG G + P +V +P
Sbjct: 740 PADFTYVQVSAGRYHSLALGSDG-NAWAWGSNFEGQLGDGTGTNRNTPVMVKTPDRSTYP 798
Query: 295 PLTEEFKQDELNTGGL 310
L +F +++ G L
Sbjct: 799 DLPADFTYVQVSAGWL 814
>gi|118398943|ref|XP_001031798.1| regulator of chromosome condensation (RCC1) [Tetrahymena
thermophila]
gi|89286132|gb|EAR84135.1| regulator of chromosome condensation (RCC1) [Tetrahymena
thermophila SB210]
Length = 443
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 139/317 (43%), Gaps = 55/317 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V+AG +S+A+ + G ++ WG E S + P + G + ++
Sbjct: 83 KIKKVEAGKSISMALTHNGEVYSWGKNKGGILGHEDRLSFNMT-QPERIEKLLGKKIKQI 141
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD---RESRLRPK---IIETFNQ 116
+CG H+ A+ GE Y+WG G+LG + +E +++ K + + Q
Sbjct: 142 SCGQFHMAAVTEDGEV--------YTWGNKEFGKLGHEEELKQEQKIKIKRGNLSHDYLQ 193
Query: 117 DS--PWAV--------YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
DS P + +V CG T +L+ + +TFG + G LG+ + Q
Sbjct: 194 DSMLPQKIESLGNIKAKQVACGIQFTVVLSE--------DGKVYTFGYNQYGSLGYVSDQ 245
Query: 167 SAL-VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
+++ P+ +K+L +V + G + ++ G +++WG + N L +++
Sbjct: 246 NSVTTPQLIKDLND---IVKISAGYSFCAAITKQGKLYTWGNNR------NGQLGNSQSL 296
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
P +++G G V V+CG +T G +L++WG G G LG G D
Sbjct: 297 YQTKPSIVTGFGSQ----NSIVDVSCGDNFIAALTQQG-QLYTWGFGGDGQLGHGNKSDL 351
Query: 286 FAPAIVLWPPLTEEFKQ 302
+AP V EFKQ
Sbjct: 352 YAPRHV-------EFKQ 361
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 126/320 (39%), Gaps = 53/320 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTE-------------GGFS---LVSSF 46
+I + G A+ G ++ WGN E G S L S
Sbjct: 137 KIKQISCGQFHMAAVTEDGEVYTWGNKEFGKLGHEEELKQEQKIKIKRGNLSHDYLQDSM 196
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG-LGDRESR 105
P + +VACG + V L ED Y++G N G LG + D+ S
Sbjct: 197 LPQKIESLGNIKAKQVACGIQFTVVL--------SEDGKVYTFGYNQYGSLGYVSDQNSV 248
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
P++I+ N + +++ G A +T + + +T+G NGQLG+ +
Sbjct: 249 TTPQLIKDLND-----IVKISAGYSFCAAITKQGK--------LYTWGNNRNGQLGNSQS 295
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
P V +V V CG + ++ G +++W G + L
Sbjct: 296 LYQTKPSIVTGFGSQNSIVDVSCGDNFIAALTQQGQLYTW------GFGGDGQLGHGNKS 349
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
D +P H Q +++ACG +H +T+D +L+ +GRG G LG G+ +
Sbjct: 350 DLYAP-------RHVEFKQKIIKIACGGSHAAFITEDN-QLYQFGRGSEGQLGIGQNVAS 401
Query: 286 FAPAIVLWPPLTEEFKQDEL 305
A +I P L + FK ++
Sbjct: 402 EA-SIRSTPNLVQYFKGKQV 420
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 97/218 (44%), Gaps = 33/218 (15%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
TP + D + +VK++ G A+ G+ Y+WG N NGQLG +
Sbjct: 250 TPQLIKDLN--DIVKISAGYSFCAAITKQGK--------LYTWGNNRNGQLGNSQSLYQT 299
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
+P I+ F S ++ +V+CG A LT + +T+G G +GQLGHG
Sbjct: 300 KPSIVTGFG--SQNSIVDVSCGDNFIAALTQ--------QGQLYTWGFGGDGQLGHGNKS 349
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM--EKGLGLCPNASLTRNEA 224
P V E Q + + + CG H + ++ ++ +G E LG+ N + +EA
Sbjct: 350 DLYAPRHV-EFKQKI--IKIACGGSHAAFITEDNQLYQFGRGSEGQLGIGQNVA---SEA 403
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
+P L+ K + V V CG HT+ +T +
Sbjct: 404 SIRSTPNLV-----QYFKGKQVVDVTCGGEHTIAITQE 436
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 114/269 (42%), Gaps = 58/269 (21%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES- 104
+TP+ + + KV G +AL GE YSWG N G LG DR S
Sbjct: 71 YTPTEIEVLTDKKIKKVEAGKSISMALTHNGEV--------YSWGKNKGGILGHEDRLSF 122
Query: 105 -RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-- 161
+P+ IE + +++CG FH A +T + +T+G E G+LG
Sbjct: 123 NMTQPERIEKL---LGKKIKQISCGQFHMAAVTE--------DGEVYTWGNKEFGKLGHE 171
Query: 162 -----------------HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
H Q +++P++++ L + V CG+ T V+S G V++
Sbjct: 172 EELKQEQKIKIKRGNLSHDYLQDSMLPQKIESLGN-IKAKQVACGIQFTVVLSEDGKVYT 230
Query: 205 WGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
+G + LG + + +P LI D V+++ G + +T
Sbjct: 231 FGYNQYGSLGYVSDQN-------SVTTPQLI-------KDLNDIVKISAGYSFCAAITKQ 276
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G KL++WG R+G LG +++ P+IV
Sbjct: 277 G-KLYTWGNNRNGQLGNSQSLYQTKPSIV 304
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 33/211 (15%)
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPN 142
+ + YSWG GQLGL + + P IE + +V G + LTH
Sbjct: 48 ETIVYSWGYGGFGQLGLQNENNYYTPTEIEVLTDKK---IKKVEAGKSISMALTHNGE-- 102
Query: 143 DMLESMCWTFGLGENGQLGHGTTQS--ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAG 200
+++G + G LGH S PE++++L + + CG FH + V+ G
Sbjct: 103 ------VYSWGKNKGGILGHEDRLSFNMTQPERIEKLLG-KKIKQISCGQFHMAAVTEDG 155
Query: 201 DVWSWGMEKGLGL-------------CPNASLTRNEAGDAISPILISGNGPHGPKFQDPV 247
+V++WG ++ L +L+ + D++ P I G K
Sbjct: 156 EVYTWGNKEFGKLGHEEELKQEQKIKIKRGNLSHDYLQDSMLPQKIESLGNIKAK----- 210
Query: 248 QVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
QVACG TV++++DG K++++G + G LG
Sbjct: 211 QVACGIQFTVVLSEDG-KVYTFGYNQYGSLG 240
>gi|63995563|gb|AAY41038.1| unknown [Homo sapiens]
Length = 382
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 141/303 (46%), Gaps = 60/303 (19%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIIHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG L E+ +E
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLG-------LSDEKDRES 232
Query: 178 PQYVYL------VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP- 230
P +V L V + CG HT+V++ +G V+++G G C L + D ++P
Sbjct: 233 PCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPR 286
Query: 231 --ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ + G+ + Q+ACG HT+ ++++G G G LGTG T + P
Sbjct: 287 RVLELMGS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCP 338
Query: 289 AIV 291
+ V
Sbjct: 339 SPV 341
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 107/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLGH-EREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IIHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q L V CG +H +++ G ++WG + GLG AS R + + I P
Sbjct: 134 LNQQTIL-QVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEKDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|383411601|gb|AFH29014.1| putative E3 ubiquitin-protein ligase HERC4 isoform b [Macaca
mulatta]
Length = 1049
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIIQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
++VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 IQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I +QVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------IQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWG---RGRSGVLGTGKTI 283
++WG G+ G+LG+ + I
Sbjct: 106 YAWGLDSDGQLGLLGSEECI 125
>gi|148704197|gb|EDL36144.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 1, isoform CRA_b [Mus musculus]
Length = 563
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 108/249 (43%), Gaps = 29/249 (11%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
S+ P + G + ++ GS V L + ED V Y+WG N QLG G
Sbjct: 93 STLVPKKLEALCGKKIKSLSYGSGPHVLLTT-------EDGVVYAWGHNGYSQLGNGTTN 145
Query: 104 SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
+ P ++ V EV CGS H+ L + + +G GQ+G G
Sbjct: 146 QGIAP--VQVCTNLLIKQVIEVACGSHHSMALA--------ADGELFAWGYNNCGQVGSG 195
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE 223
+T + P +V +V++ CG + V +G+V+ WG N L
Sbjct: 196 STANQPTPRKVTNCLHTKRVVNIACGQTSSMAVLDSGEVYGWGYNG------NGQLGLGN 249
Query: 224 AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
G+ ++P+ ++ HG Q+ CG AHT+ +TD+G L++WG G LGTG
Sbjct: 250 NGNQLTPVRVA--ALHGMCVN---QIVCGYAHTLALTDEGL-LYAWGANTYGQLGTGSKN 303
Query: 284 DFFAPAIVL 292
+ +P ++
Sbjct: 304 NLLSPTQIM 312
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 96/214 (44%), Gaps = 29/214 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG--NCPLPDSSTEGGFSLVSSFTPSPVWD-FHGH 57
+ Q+ V G S+A+ G L+ WG NC G S + TP V + H
Sbjct: 159 IKQVIEVACGSHHSMALAADGELFAWGYNNC-----GQVGSGSTANQPTPRKVTNCLHTK 213
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +ACG +A++ +GE Y WG N NGQLGLG+ ++L P + +
Sbjct: 214 RVVNIACGQTSSMAVLDSGEVY--------GWGYNGNGQLGLGNNGNQLTPVRVAALH-- 263
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V ++ CG HT LT E + + +G GQLG G+ + L P Q+
Sbjct: 264 -GMCVNQIVCGYAHTLALTD--------EGLLYAWGANTYGQLGTGSKNNLLSPTQIMVE 314
Query: 178 PQYVYLVSVDCGLFHTSVV-SSAGDVWSWGMEKG 210
+ V ++ C HTS + G V+ WG +G
Sbjct: 315 KERVIEIAA-CHSTHTSAAKTQGGHVYMWGQCRG 347
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 108/262 (41%), Gaps = 40/262 (15%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + V T + V++VACGS H +AL + GE
Sbjct: 126 GVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLI-----KQVIEVACGSHHSMALAADGE 180
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
+ +WG NN GQ+G G ++ P+ + N V + CG + +
Sbjct: 181 LF--------AWGYNNCGQVGSGSTANQPTPRKVT--NCLHTKRVVNIACGQTSSMAVL- 229
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L + + + CG HT ++
Sbjct: 230 -----DSGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HGMCVNQIVCGYAHTLALT 281
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTV 257
G +++WG T + G L+S K + AC + HT
Sbjct: 282 DEGLLYAWGAN-----------TYGQLGTGSKNNLLSPTQIMVEKERVIEIAACHSTHTS 330
Query: 258 LVTDDGYKLWSWG--RGRSGVL 277
G ++ WG RG+S +L
Sbjct: 331 AAKTQGGHVYMWGQCRGQSVIL 352
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS LVP++++ L + + +S G H + + G V++WG
Sbjct: 76 FVFGLNYSNCLGTGDNQSTLVPKKLEALCGKKIKSLSYGSGP-HVLLTTEDGVVYAWGHN 134
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+P+ + N + ++VACG+ H++ + DG +L++
Sbjct: 135 G------YSQLGNGTTNQGIAPVQVCTN----LLIKQVIEVACGSHHSMALAADG-ELFA 183
Query: 269 WGRGRSGVLGTGKTIDFFAPAIV 291
WG G +G+G T + P V
Sbjct: 184 WGYNNCGQVGSGSTANQPTPRKV 206
>gi|414587149|tpg|DAA37720.1| TPA: putative regulator of chromosome condensation (RCC1) family
protein, partial [Zea mays]
Length = 168
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 89/169 (52%), Gaps = 23/169 (13%)
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
TVV V+ G+ H VAL++ +++C SWG +GQLG GD E RL P ++ F
Sbjct: 13 QTVVLVSAGASHSVALLTG-------NVLC-SWGRGEDGQLGHGDAEDRLVPTVLSGF-- 62
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
D+P A+ V CG+ HT + D L+ W G G+ G+LGHG + P+ VK
Sbjct: 63 DAP-AITSVICGADHTTAYS-----EDELQVYSW--GWGDFGRLGHGNSSDVFTPQPVKA 114
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTR 221
L Q + + + CG H V+ AG+V SWG + GLG ++ L +
Sbjct: 115 L-QGLKIKQIACGDSHCLAVTMAGEVQSWGRNQNGQLGLGTTEDSLLPQ 162
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
FTP PV G + ++ACG H +A+ AGE SWG N NGQLGLG E
Sbjct: 107 FTPQPVKALQGLKIKQIACGDSHCLAVTMAGEVQ--------SWGRNQNGQLGLGTTEDS 158
Query: 106 LRPKIIETF 114
L P+ I+ F
Sbjct: 159 LLPQKIQAF 167
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 21/171 (12%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
V AG S+A+ L WG + G P+ + F + V CG+
Sbjct: 18 VSAGASHSVALLTGNVLCSWGR---GEDGQLGHGDAEDRLVPTVLSGFDAPAITSVICGA 74
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
+H A Y ++L YSWG + G+LG G+ P+ ++ + ++
Sbjct: 75 DHTTA-------YSEDELQVYSWGWGDFGRLGHGNSSDVFTPQPVKALQG---LKIKQIA 124
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
CG H +T + ++G +NGQLG GTT+ +L+P++++
Sbjct: 125 CGDSHCLAVT--------MAGEVQSWGRNQNGQLGLGTTEDSLLPQKIQAF 167
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 80/172 (46%), Gaps = 24/172 (13%)
Query: 119 PWAVYEVTCGSFHT-ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P V V+ G+ H+ ALLT +C ++G GE+GQLGHG + LVP +
Sbjct: 12 PQTVVLVSAGASHSVALLTGNV--------LC-SWGRGEDGQLGHGDAEDRLVPTVLSGF 62
Query: 178 PQYVYLVSVDCGLFHTSVVSSAG-DVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ SV CG HT+ S V+SWG L + D +P +
Sbjct: 63 -DAPAITSVICGADHTTAYSEDELQVYSWGWGD------FGRLGHGNSSDVFTPQPV--K 113
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
G K + Q+ACG +H + VT G ++ SWGR ++G LG G T D P
Sbjct: 114 ALQGLKIK---QIACGDSHCLAVTMAG-EVQSWGRNQNGQLGLGTTEDSLLP 161
>gi|224589107|ref|NP_001139174.1| probable E3 ubiquitin-protein ligase HERC4-like [Danio rerio]
Length = 985
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 115/246 (46%), Gaps = 32/246 (13%)
Query: 50 PVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-P 108
P+ V+++ACG +H VAL + G+ + WG N +GQLGL ++ ++ P
Sbjct: 111 PLKGLDNTKVIQIACGDQHSVALSNDGQ--------LFVWGENAHGQLGLRKEQALIQSP 162
Query: 109 KIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA 168
+ +++ V +++ G H+ +L+ L + + +G GQLG G T
Sbjct: 163 QHLQSL---CGIPVAQISAGGNHSFVLS--------LSGVVFGWGSNSAGQLGLGDTTDR 211
Query: 169 LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
VP VK L VS+ CG HT+ +S G V+++G G G L N D
Sbjct: 212 FVPTIVKSLSGK-KTVSISCGGEHTATLSKGGTVFTFG-SGGFG-----QLGHNSLKDEH 264
Query: 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
P L++ G K QV CG HT+++ +++S+G G G LG G+ + P
Sbjct: 265 HPRLVAE--LWGSKVS---QVTCGRHHTLVLVALTNRIYSFGCGMQGQLGNGEQVKQSVP 319
Query: 289 AIVLWP 294
VL P
Sbjct: 320 LPVLLP 325
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 96/214 (44%), Gaps = 25/214 (11%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+++ + G S+A+ N G L++WG +L+ S P + G V +
Sbjct: 118 TKVIQIACGDQHSVALSNDGQLFVWGENAHGQLGLRKEQALIQS--PQHLQSLCGIPVAQ 175
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
++ G H L +G V + WG+N+ GQLGLGD R P I+++ S
Sbjct: 176 ISAGGNHSFVLSLSG--------VVFGWGSNSAGQLGLGDTTDRFVPTIVKSL---SGKK 224
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
++CG HTA L+ +TFG G GQLGH + + P V EL
Sbjct: 225 TVSISCGGEHTATLSK--------GGTVFTFGSGGFGQLGHNSLKDEHHPRLVAEL-WGS 275
Query: 182 YLVSVDCGLFHTSV-VSSAGDVWSW--GMEKGLG 212
+ V CG HT V V+ ++S+ GM+ LG
Sbjct: 276 KVSQVTCGRHHTLVLVALTNRIYSFGCGMQGQLG 309
>gi|37747571|gb|AAH60033.1| Herc4 protein [Mus musculus]
Length = 1057
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 98/235 (41%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIDCQKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQAACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 129/297 (43%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L S P + +
Sbjct: 86 IVAVACGEAHTLALNDKGQVYAWG------LDSDGQLGLQGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P++I++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGIDCQKQTSPQLIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQAACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 103/252 (40%), Gaps = 68/252 (26%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL----------- 135
WG + GQLGLG D E L P+ + F V +V CG HT +
Sbjct: 4 WGNASYGQLGLGGIDEEIVLEPRRSDFFVNKK---VRDVGCGLRHTVFVLDDGTVYTCGC 60
Query: 136 ---------THRKRPNDML----------------------ESMCWTFGLGENGQLG-HG 163
RK+P ++ + + +GL +GQLG G
Sbjct: 61 NDLGQLGHEKSRKKPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQLGLQG 120
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASL 219
+ + VP +K L + +V V CG +H+ +S A +V+ WG K GLG+
Sbjct: 121 SEECIRVPRNIKSLSD-IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGI------ 173
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
+ SP LI G F +QVA G AH+ ++T G ++ WGR + G LG
Sbjct: 174 ---DCQKQTSPQLIK--SLLGIPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGL 224
Query: 280 GKTIDFFAPAIV 291
D + P ++
Sbjct: 225 NDENDRYVPNLL 236
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E + + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASYGQLGLGGIDEEIVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V VACG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVACGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|397488796|ref|XP_003815430.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Pan
paniscus]
Length = 815
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 37/235 (15%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+ V V ACG H + G Y + G NN GQLGLGD E R
Sbjct: 78 PTCVKALKPEKVKLAACGRNHTLVSTEGGNVY--------ATGGNNEGQLGLGDTEERNT 129
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
+I F S + +++ GS +A LT R + +G GQ+G +
Sbjct: 130 FHVISFFT--SEHKIKQLSAGSNTSAALTEDGR--------LFMWGDNSEGQIGLKNVSN 179
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAG 225
VP+QV + + V +S CG +H++ V++ G+++ +G E G LGL PN L G
Sbjct: 180 VCVPQQVT-IGKPVSWIS--CGYYHSAFVTTDGELYVFGEPENGKLGL-PNQLL-----G 230
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ +P L+S P + +QVACG HTV++T++ ++++G G+ G LG G
Sbjct: 231 NHRTPQLVS----EIP--EKVIQVACGGEHTVVLTENA--VYTFGLGQFGQLGLG 277
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 126/291 (43%), Gaps = 52/291 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ S + G + + +N G L L D+ F ++S FT H + +++
Sbjct: 100 LVSTEGGNVYATGGNNEGQLG------LGDTEERNTFHVISFFTSE-------HKIKQLS 146
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS AL ED + WG N+ GQ+GL + + P+ + T + W
Sbjct: 147 AGSNTSAALT--------EDGRLFMWGDNSEGQIGLKNVSNVCVPQQV-TIGKPVSW--- 194
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG--HGTTQSALVPEQVKELPQYV 181
++CG +H+A +T + + FG ENG+LG + + P+ V E+P+ V
Sbjct: 195 -ISCGYYHSAFVT--------TDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSEIPEKV 245
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG HT VV + V+++G+ + L L I I
Sbjct: 246 --IQVACGGEHT-VVLTENAVYTFGLGQFGQLGLGTFLFETSEPKVIENI---------- 292
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG--KTIDFFAPAI 290
+ Q ++CG HT L+TD G ++++G GR G LG G + F P +
Sbjct: 293 RDQTISYISCGENHTALITDIGL-MYTFGDGRHGKLGLGLENFTNHFIPTL 342
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 40/221 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + AG S A+ G L+MWG+ +S + G VS+ P G V +
Sbjct: 141 KIKQLSAGSNTSAALTEDGRLFMWGD----NSEGQIGLKNVSNVC-VPQQVTIGKPVSWI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR--ESRLRPKIIETFNQDSPW 120
+CG H + + GE Y +G NG+LGL ++ + P+++ P
Sbjct: 196 SCGYYHSAFVTTDGE--------LYVFGEPENGKLGLPNQLLGNHRTPQLVSEI----PE 243
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT----TQSALVPEQVKE 176
V +V CG HT +LT E+ +TFGLG+ GQLG GT T V E +++
Sbjct: 244 KVIQVACGGEHTVVLT---------ENAVYTFGLGQFGQLGLGTFLFETSEPKVIENIRD 294
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGL 213
Q + +S CG HT++++ G ++++G + GLGL
Sbjct: 295 --QTISYIS--CGENHTALITDIGLMYTFGDGRHGKLGLGL 331
>gi|426344974|ref|XP_004039178.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Gorilla
gorilla gorilla]
Length = 982
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 113/246 (45%), Gaps = 31/246 (12%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRL 106
P P+ V V+CG EH +A+ G ++WGA + GQLG+G+ +E
Sbjct: 66 PEPIQALETLIVDLVSCGKEHSLAVCHKGRV--------FAWGAGSEGQLGIGEFKEISF 117
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT- 165
PK I T N + +V+CG +H+ L+ +S +++G +GQLG G
Sbjct: 118 TPKKITTLNG---IKIIQVSCGHYHSLALSK--------DSQVFSWGKNSHGQLGLGKEF 166
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
S P++V+ L + + L V G H+ +S G + WG L + RN
Sbjct: 167 PSQASPQRVRSL-EGIPLAQVAAGGTHSFALSLCGTSFGWGSNSAGQLALSG---RNVPA 222
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ P+ I G V ++CG HT ++T DG K++++G SG LG T +
Sbjct: 223 QSNKPLSIGALKNLG-----VVYISCGDEHTAVLTQDG-KVFTFGDNCSGQLGYSPTPEK 276
Query: 286 FAPAIV 291
P +V
Sbjct: 277 RGPQLV 282
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 127/284 (44%), Gaps = 62/284 (21%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHTVVKV 62
V G SLA+ + G ++ WG + +EG + SFTP + +G +++V
Sbjct: 80 VSCGKEHSLAVCHKGRVFAWG------AGSEGQLGIGEFKEISFTPKKITTLNGIKIIQV 133
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWA 121
+CG H +AL +D +SWG N++GQLGLG S+ P+ + + + P A
Sbjct: 134 SCGHYHSLAL--------SKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSL-EGIPLA 184
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWT-FGLGEN--GQL---GHGTTQSALVPEQVK 175
+V G H+ L S+C T FG G N GQL G + P +
Sbjct: 185 --QVAAGGTHSFAL-----------SLCGTSFGWGSNSAGQLALSGRNVPAQSNKPLSIG 231
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L + + +V + CG HT+V++ G V+++G N S + G + +P
Sbjct: 232 AL-KNLGVVYISCGDEHTAVLTQDGKVFTFG--------DNCS---GQLGYSPTP----- 274
Query: 236 NGPHGPKFQDPV-----QVACGAAHTVLVTDDGYKLWSWGRGRS 274
GP+ + + Q+ CG+ HT+ ++ S+G G S
Sbjct: 275 -EKRGPQLVERIDGLVSQIDCGSYHTLAYVHTTGQVVSFGHGPS 317
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 12/134 (8%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ G + WG+ + G S P + VV ++
Sbjct: 183 LAQVAAGGTHSFALSLCGTSFGWGSNSAGQLALSGRNVPAQSNKPLSIGALKNLGVVYIS 242
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG EH L G+ +++G N +GQLG + P+++E + V
Sbjct: 243 CGDEHTAVLTQDGKV--------FTFGDNCSGQLGYSPTPEKRGPQLVERID----GLVS 290
Query: 124 EVTCGSFHTALLTH 137
++ CGS+HT H
Sbjct: 291 QIDCGSYHTLAYVH 304
>gi|62898714|dbj|BAD97211.1| retinitis pigmentosa GTPase regulator variant [Homo sapiens]
Length = 815
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 37/235 (15%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+ V V ACG H + G Y + G NN GQLGLGD E R
Sbjct: 78 PTCVKALKPEKVKLAACGRNHTLVSTEGGNVY--------ATGGNNEGQLGLGDTEERNT 129
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
+I F S + +++ GS +A LT R + +G GQ+G +
Sbjct: 130 FHVISFFT--SEHKIKQLSAGSNTSAALTEDGR--------LFMWGDNSEGQIGLKNVSN 179
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAG 225
VP+QV + + V +S CG +H++ V++ G+++ +G E G LGL PN L G
Sbjct: 180 VCVPQQVT-IGKPVSWIS--CGYYHSAFVTTDGELYVFGEPENGKLGL-PNQLL-----G 230
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ +P L+S P + +QVACG HTV++T++ ++++G G+ G LG G
Sbjct: 231 NHRTPQLVS----EIP--EKVIQVACGGEHTVVLTENA--VYTFGLGQFGQLGLG 277
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 126/291 (43%), Gaps = 52/291 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ S + G + + +N G L L D+ F ++S FT H + +++
Sbjct: 100 LVSTEGGNVYATGGNNEGQLG------LGDTEERNTFHVISFFTSE-------HKIKQLS 146
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS AL ED + WG N+ GQ+GL + + P+ + T + W
Sbjct: 147 AGSNTSAALT--------EDGRLFMWGDNSEGQIGLKNVSNVCVPQQV-TIGKPVSW--- 194
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG--HGTTQSALVPEQVKELPQYV 181
++CG +H+A +T + + FG ENG+LG + + P+ V E+P+ V
Sbjct: 195 -ISCGYYHSAFVT--------TDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSEIPEKV 245
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG HT VV + V+++G+ + L L I I
Sbjct: 246 --IQVACGGEHT-VVLTENAVYTFGLGQFGQLGLGTFLFETSEPKVIENI---------- 292
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG--KTIDFFAPAI 290
+ Q ++CG HT L+TD G ++++G GR G LG G + F P +
Sbjct: 293 RDQTISYISCGENHTALITDIGL-MYTFGDGRHGKLGLGLENFTNHFIPTL 342
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 40/221 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + AG S A+ G L+MWG+ +S + G VS+ P G V +
Sbjct: 141 KIKQLSAGSNTSAALTEDGRLFMWGD----NSEGQIGLKNVSNVC-VPQQVTIGKPVSWI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR--ESRLRPKIIETFNQDSPW 120
+CG H + + GE Y +G NG+LGL ++ + P+++ P
Sbjct: 196 SCGYYHSAFVTTDGE--------LYVFGEPENGKLGLPNQLLGNHRTPQLVSEI----PE 243
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT----TQSALVPEQVKE 176
V +V CG HT +LT E+ +TFGLG+ GQLG GT T V E +++
Sbjct: 244 KVIQVACGGEHTVVLT---------ENAVYTFGLGQFGQLGLGTFLFETSEPKVIENIRD 294
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGL 213
Q + +S CG HT++++ G ++++G + GLGL
Sbjct: 295 --QTISYIS--CGENHTALITDIGLMYTFGDGRHGKLGLGL 331
>gi|4506581|ref|NP_000319.1| X-linked retinitis pigmentosa GTPase regulator isoform A [Homo
sapiens]
gi|1314871|gb|AAC50481.1| retinitis pigmentosa GTPase regulator [Homo sapiens]
gi|2204218|emb|CAA66258.1| XLRP3 [Homo sapiens]
gi|119579845|gb|EAW59441.1| retinitis pigmentosa GTPase regulator, isoform CRA_a [Homo sapiens]
Length = 815
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 37/235 (15%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+ V V ACG H + G Y + G NN GQLGLGD E R
Sbjct: 78 PTCVKALKPEKVKLAACGRNHTLVSTEGGNVY--------ATGGNNEGQLGLGDTEERNT 129
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
+I F S + +++ GS +A LT R + +G GQ+G +
Sbjct: 130 FHVISFFT--SEHKIKQLSAGSNTSAALTEDGR--------LFMWGDNSEGQIGLKNVSN 179
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAG 225
VP+QV + + V +S CG +H++ V++ G+++ +G E G LGL PN L G
Sbjct: 180 VCVPQQVT-IGKPVSWIS--CGYYHSAFVTTDGELYVFGEPENGKLGL-PNQLL-----G 230
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ +P L+S P + +QVACG HTV++T++ ++++G G+ G LG G
Sbjct: 231 NHRTPQLVS----EIP--EKVIQVACGGEHTVVLTENA--VYTFGLGQFGQLGLG 277
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 126/291 (43%), Gaps = 52/291 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ S + G + + +N G L L D+ F ++S FT H + +++
Sbjct: 100 LVSTEGGNVYATGGNNEGQLG------LGDTEERNTFHVISFFTSE-------HKIKQLS 146
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS AL ED + WG N+ GQ+GL + + P+ + T + W
Sbjct: 147 AGSNTSAALT--------EDGRLFMWGDNSEGQIGLKNVSNVCVPQQV-TIGKPVSW--- 194
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG--HGTTQSALVPEQVKELPQYV 181
++CG +H+A +T + + FG ENG+LG + + P+ V E+P+ V
Sbjct: 195 -ISCGYYHSAFVT--------TDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSEIPEKV 245
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG HT VV + V+++G+ + L L I I
Sbjct: 246 --IQVACGGEHT-VVLTENAVYTFGLGQFGQLGLGTFLFETSEPKVIENI---------- 292
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG--KTIDFFAPAI 290
+ Q ++CG HT L+TD G ++++G GR G LG G + F P +
Sbjct: 293 RDQTISYISCGENHTALITDIGL-MYTFGDGRHGKLGLGLENFTNHFIPTL 342
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 40/221 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + AG S A+ G L+MWG+ +S + G VS+ P G V +
Sbjct: 141 KIKQLSAGSNTSAALTEDGRLFMWGD----NSEGQIGLKNVSNVC-VPQQVTIGKPVSWI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR--ESRLRPKIIETFNQDSPW 120
+CG H + + GE Y +G NG+LGL ++ + P+++ P
Sbjct: 196 SCGYYHSAFVTTDGE--------LYVFGEPENGKLGLPNQLLGNHRTPQLVSEI----PE 243
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT----TQSALVPEQVKE 176
V +V CG HT +LT E+ +TFGLG+ GQLG GT T V E +++
Sbjct: 244 KVIQVACGGEHTVVLT---------ENAVYTFGLGQFGQLGLGTFLFETSEPKVIENIRD 294
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGL 213
Q + +S CG HT++++ G ++++G + GLGL
Sbjct: 295 --QTISYIS--CGENHTALITDIGLMYTFGDGRHGKLGLGL 331
>gi|449680679|ref|XP_002161042.2| PREDICTED: uncharacterized protein LOC100209924 [Hydra
magnipapillata]
Length = 809
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 124/293 (42%), Gaps = 39/293 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNC-PLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
I V + S ++ +G L+ +G P +TE V P V DF +K
Sbjct: 459 NITFVSCNELHSASVTESGELYTFGRSGPHLGYTTEDRKQAV----PRKV-DFSTANKIK 513
Query: 62 -VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V+CG E +AL S GE Y S+G N+ GQLG G P +I+ N
Sbjct: 514 AVSCGLEFTIALNSEGELY--------SFGKNDCGQLGAGHFNDIEEPYLIKHLN---GV 562
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ +V+CGS H +T + W +G E GQLG ++ +P +
Sbjct: 563 RISKVSCGSKHVGAVT--------VNGDVWLWGSNEFGQLGTDKLEAHDIPFEAPSTFWN 614
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGNGP 238
+ + CG HT V+S G V+ +G + LG+ N + SP + +
Sbjct: 615 EEIQDIKCGGSHTVVLSCTGVVYVFGNGQSGQLGVAVNQT----------SPYITNPCIL 664
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P +V CG HT VT+ G L++WG G G LG G D + P +V
Sbjct: 665 SMPNNTKIAKVDCGIEHTAAVTESGC-LYTWGNGSRGRLGHGDHQDRYVPTLV 716
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 40/260 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
++I +V G ++A+++ G L+ +G D G P + +G + K
Sbjct: 510 NKIKAVSCGLEFTIALNSEGELYSFGK---NDCGQLGAGHFNDIEEPYLIKHLNGVRISK 566
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW- 120
V+CGS+HV A+ G+ + WG+N GQLG E+ P F S +
Sbjct: 567 VSCGSKHVGAVTVNGDVW--------LWGSNEFGQLGTDKLEAHDIP-----FEAPSTFW 613
Query: 121 --AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA--LVPEQVKE 176
+ ++ CG HT +L+ + + FG G++GQLG Q++ + +
Sbjct: 614 NEEIQDIKCGGSHTVVLS--------CTGVVYVFGNGQSGQLGVAVNQTSPYITNPCILS 665
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+P + VDCG+ HT+ V+ +G +++WG L + D P L+
Sbjct: 666 MPNNTKIAKVDCGIEHTAAVTESGCLYTWGNG------SRGRLGHGDHQDRYVPTLVESL 719
Query: 237 GPHGPKFQDPVQVACGAAHT 256
++ +ACGA HT
Sbjct: 720 A-----YKQVQSIACGAYHT 734
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 26/206 (12%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIET-FNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y+WGA+ G LG G+ L P+++E +D + V CG+ HT ++ +
Sbjct: 376 YTWGASPKGVLGHGEETEELFPRVVEALLGRD----IRTVACGTEHTLAVS--------V 423
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSW 205
+++G G G+LG +P ++ + V + V C H++ V+ +G+++++
Sbjct: 424 NGEMFSWGCGRGGKLGLKNILDRYMPLKIGAF-ENVNITFVSCNELHSASVTESGELYTF 482
Query: 206 GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
G P+ T + A+ P + + + K V+CG T+ + +G +
Sbjct: 483 GRSG-----PHLGYTTEDRKQAV-PRKVDFSTANKIK-----AVSCGLEFTIALNSEG-E 530
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIV 291
L+S+G+ G LG G D P ++
Sbjct: 531 LYSFGKNDCGQLGAGHFNDIEEPYLI 556
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 19/151 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL--VSSFTPSP-VWDFHGHT- 58
+I +K GG ++ + G ++++GN S + G ++ S + +P + +T
Sbjct: 616 EIQDIKCGGSHTVVLSCTGVVYVFGN----GQSGQLGVAVNQTSPYITNPCILSMPNNTK 671
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ KV CG EH A+ +G Y+WG + G+LG GD + R P ++E+ +
Sbjct: 672 IAKVDCGIEHTAAVTESG--------CLYTWGNGSRGRLGHGDHQDRYVPTLVESL---A 720
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
V + CG++HTA R +D C
Sbjct: 721 YKQVQSIACGAYHTAACVIRAWVHDQETKSC 751
>gi|158257096|dbj|BAF84521.1| unnamed protein product [Homo sapiens]
Length = 815
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 37/235 (15%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+ V V ACG H + G Y + G NN GQLGLGD E R
Sbjct: 78 PTCVKALKPEKVKLAACGRNHTLVSTEGGNVY--------ATGGNNEGQLGLGDTEERNT 129
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
+I F S + +++ GS +A LT R + +G GQ+G +
Sbjct: 130 FHVISFFT--SEHKIKQLSAGSNTSAALTEDGR--------LFMWGDNSEGQIGLKNVSN 179
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAG 225
VP+QV + + V +S CG +H++ V++ G+++ +G E G LGL PN L G
Sbjct: 180 VCVPQQVT-IGKPVSWIS--CGYYHSAFVTTDGELYVFGEPENGKLGL-PNQLL-----G 230
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ +P L+S P + +QVACG HTV++T++ ++++G G+ G LG G
Sbjct: 231 NHRTPQLVS----EIP--EKVIQVACGGEHTVVLTENA--VYTFGLGQFGQLGLG 277
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 126/291 (43%), Gaps = 52/291 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ S + G + + +N G L L D+ F ++S FT H + +++
Sbjct: 100 LVSTEGGNVYATGGNNEGQLG------LGDTEERNTFHVISFFTSE-------HKIKQLS 146
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS AL ED + WG N+ GQ+GL + + P+ + T + W
Sbjct: 147 AGSNTSAALT--------EDGRLFMWGDNSEGQIGLKNVSNVCVPQQV-TIGKPVSW--- 194
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG--HGTTQSALVPEQVKELPQYV 181
++CG +H+A +T + + FG ENG+LG + + P+ V E+P+ V
Sbjct: 195 -ISCGYYHSAFVT--------TDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSEIPEKV 245
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG HT VV + V+++G+ + L L I I
Sbjct: 246 --IQVACGGEHT-VVLTENAVYTFGLGQFGQLGLGTFLFETSEPKVIENI---------- 292
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG--KTIDFFAPAI 290
+ Q ++CG HT L+TD G ++++G GR G LG G + F P +
Sbjct: 293 RDQTISYISCGENHTALITDIGL-MYTFGDGRHGKLGLGLENFTNHFIPTL 342
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 40/221 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + AG S A+ G L+MWG+ +S + G VS+ P G V +
Sbjct: 141 KIKQLSAGSNTSAALTEDGRLFMWGD----NSEGQIGLKNVSNVC-VPQQVTIGKPVSWI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR--ESRLRPKIIETFNQDSPW 120
+CG H + + GE Y +G NG+LGL ++ + P+++ P
Sbjct: 196 SCGYYHSAFVTTDGE--------LYVFGEPENGKLGLPNQLLGNHRTPQLVSEI----PE 243
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT----TQSALVPEQVKE 176
V +V CG HT +LT E+ +TFGLG+ GQLG GT T V E +++
Sbjct: 244 KVIQVACGGEHTVVLT---------ENAVYTFGLGQFGQLGLGTFLFETSEPKVIENIRD 294
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGL 213
Q + +S CG HT++++ G ++++G + GLGL
Sbjct: 295 --QTISYIS--CGENHTALITDIGLMYTFGDGRHGKLGLGL 331
>gi|114630760|ref|XP_001167652.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 4
[Pan troglodytes]
Length = 979
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G LV S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLVGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKR---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLVGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|449504701|ref|XP_002190698.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 [Taeniopygia
guttata]
Length = 991
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 101/254 (39%), Gaps = 33/254 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ ++ WG G+ +P + G ++
Sbjct: 138 QIVQVACGYYHSLALSKGSEVFSWGQNKYGQLGL--GYEYKKQTSPQMIKSLLGIPFAQI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDDNDRYVPTLLKSLRSQK---V 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL V
Sbjct: 245 VHICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSV- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN----G 237
+ + CG HT+ V S+G ++S+ GL N L + SP + G+
Sbjct: 296 VTQITCGRQHTTAFVPSSGRIYSF------GLGGNGQLGTGTTSNRKSPFTVKGSWIPFS 349
Query: 238 PHGPKFQDPVQVAC 251
P P D + C
Sbjct: 350 PQCPMSTDSEECYC 363
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 135/307 (43%), Gaps = 48/307 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGH 57
I +V G +LA+++ G ++ WG +T+G L + P +
Sbjct: 84 QNIVAVSCGEAHTLALNDKGQVYAWG------LATDGQLGLPGTEECVRVPRNIRSLSEI 137
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQ 116
+V+VACG H +AL E + SWG N GQLGLG + + + P++I++
Sbjct: 138 QIVQVACGYYHSLALSKGSEVF--------SWGQNKYGQLGLGYEYKKQTSPQMIKSL-L 188
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
P+A ++ G H+ +LT L + +G + GQLG VP +K
Sbjct: 189 GIPFA--QIAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDDNDRYVPTLLKS 238
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L + +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 239 L-RSQKVVHICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKVF-- 289
Query: 237 GPHGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL-- 292
+ V Q+ CG HT +++S+G G +G LGTG T + +P V
Sbjct: 290 -----ELMGSVVTQITCGRQHTTAFVPSSGRIYSFGLGGNGQLGTGTTSNRKSPFTVKGS 344
Query: 293 WPPLTEE 299
W P + +
Sbjct: 345 WIPFSPQ 351
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 100/250 (40%), Gaps = 64/250 (25%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTAL------------ 134
WG + GQLGLG D E L P+ + F V +V CG HT
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFLNKR---VRDVGCGLRHTVFVLDDGTVYTCGC 60
Query: 135 -----LTH---RKRP------------------------NDMLESMCWTFGLGENGQLG- 161
L H RKRP ND + W GL +GQLG
Sbjct: 61 NDLGQLGHEKARKRPEHVGALDAQNIVAVSCGEAHTLALNDKGQVYAW--GLATDGQLGL 118
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTR 221
GT + VP ++ L + + +V V CG +H+ +S +V+SWG K L +
Sbjct: 119 PGTEECVRVPRNIRSLSE-IQIVQVACGYYHSLALSKGSEVFSWGQNKYGQLGLGYEYKK 177
Query: 222 NEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+ I +L G F Q+A G AH+ ++T G ++ WGR + G LG
Sbjct: 178 QTSPQMIKSLL-------GIPF---AQIAAGGAHSFVLTLSG-AIFGWGRNKFGQLGLND 226
Query: 282 TIDFFAPAIV 291
D + P ++
Sbjct: 227 DNDRYVPTLL 236
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFLNKRVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L + R E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKARKRPEHVGALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLATDGQLG 117
>gi|397520495|ref|XP_003830352.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
[Pan paniscus]
Length = 979
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G LV S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLVGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKR---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLVGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|125550526|gb|EAY96235.1| hypothetical protein OsI_18130 [Oryza sativa Indica Group]
Length = 994
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 123/290 (42%), Gaps = 44/290 (15%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSS------FTPSPVWDFHGHTVVKVACGSEHVVA 71
D+ G +++WG +S G +++ S P P+ V V CG H
Sbjct: 109 DSLGDVYVWGEVFCENSVRVGSDTIIRSTEKTDFLLPKPLESRLVLDVYHVDCGVRHAAL 168
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
+ G+ + +WG ++ G+LG G RE + P+++E+ + V V CG FH
Sbjct: 169 VTRNGDVF--------TWGEDSGGRLGHGTREDSVHPRLVESL---AACNVDFVACGEFH 217
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF 191
T +T E W G G LGHGT +P+++ + + V CG +
Sbjct: 218 TCAVT------TTGELYTWGDGTHNVGLLGHGTDAGHWIPKRISGALDGLPVAYVSCGTW 271
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
HT++++S G ++++G + G+ + +LT + +SG + VAC
Sbjct: 272 HTALITSMGQLFTFG-DGSFGVLGHGNLTSISCPKEVES--LSG--------LKTIAVAC 320
Query: 252 GAAHT-----VLVTDDGY-----KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G HT V+VT KL++WG G LG G P V
Sbjct: 321 GVWHTAAIVEVIVTHSSSSVSAGKLFTWGDGDKHRLGHGDKESRLKPTCV 370
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 128/298 (42%), Gaps = 47/298 (15%)
Query: 7 VKAGGMMSLAIDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
V G + A+ G L+ WG N L T+ G + + + G V V
Sbjct: 211 VACGEFHTCAVTTTGELYTWGDGTHNVGLLGHGTDAGHWIPKRISGA----LDGLPVAYV 266
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+CG+ H + S G+ + ++G + G LG G+ S PK +E+ S
Sbjct: 267 SCGTWHTALITSMGQLF--------TFGDGSFGVLGHGNLTSISCPKEVESL---SGLKT 315
Query: 123 YEVTCGSFHTA-----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V CG +HTA ++TH + + +T+G G+ +LGHG +S L P V L
Sbjct: 316 IAVACGVWHTAAIVEVIVTHSS--SSVSAGKLFTWGDGDKHRLGHGDKESRLKPTCVASL 373
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISG 235
Y + V CG T ++++G V S G + LG N D P L+
Sbjct: 374 IDYDFY-RVACGHSLTVCLTTSGKVLSMGNSVYGQLG---------NPNSDGRLPCLVED 423
Query: 236 N--GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G H +QVACG+ H ++T ++++WG+G +G LG G D P V
Sbjct: 424 RIAGEH------VLQVACGSYHVAVLTGRS-EVFTWGKGANGRLGHGDIEDRKVPTQV 474
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 29/259 (11%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V G + I + G L+ +G+ G +L S P V G + VA
Sbjct: 263 VAYVSCGTWHTALITSMGQLFTFGDGSF---GVLGHGNLTSISCPKEVESLSGLKTIAVA 319
Query: 64 CGSEHVVALVSAGETYKGEDLVC---YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
CG H A+V T+ + ++WG + +LG GD+ESRL+P + + +
Sbjct: 320 CGVWHTAAIVEVIVTHSSSSVSAGKLFTWGDGDKHRLGHGDKESRLKPTCVASLID---Y 376
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
Y V CG T LT + M S+ GQLG+ + L P V++
Sbjct: 377 DFYRVACGHSLTVCLTTSGKVLSMGNSV--------YGQLGNPNSDGRL-PCLVEDRIAG 427
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+++ V CG +H +V++ +V++WG KG N L + D P +
Sbjct: 428 EHVLQVACGSYHVAVLTGRSEVFTWG--KG----ANGRLGHGDIEDRKVPTQVE-----A 476
Query: 241 PKFQDPVQVACGAAHTVLV 259
K + +ACGA T +
Sbjct: 477 LKDRAVRHIACGANFTAAI 495
>gi|159036719|ref|YP_001535972.1| chromosome condensation regulator RCC1 [Salinispora arenicola
CNS-205]
gi|157915554|gb|ABV96981.1| regulator of chromosome condensation RCC1 [Salinispora arenicola
CNS-205]
Length = 553
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 123/294 (41%), Gaps = 35/294 (11%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
++ +V AG SLA+ +AG + WG+ G S TP V G TV
Sbjct: 139 TRAVAVAAGADHSLALTSAGTILAWGDNTF---GQLGDGSTTDRSTPVAVSLPAGTTVAA 195
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+A G +H + L S G T +WG N GQLG G R P + +
Sbjct: 196 IAAGRDHNLVLTSTGPTL-------LTWGKNTRGQLGDGTTTGRDTPVAVTLPPGVT--- 245
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V V G H+ +LT ++ W G GQLG+GTT +LVP V LP
Sbjct: 246 VTSVAGGRDHSLVLTSDD------TALAW--GGNSFGQLGNGTTTDSLVPIAVA-LPTGT 296
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
++ G H++ ++S G ++WG G G N S T D+ P+ +S P
Sbjct: 297 EATAIAAGRLHSAALTSEGAAFAWG-HNGRGQLGNGSTT-----DSSEPVAVSL-----P 345
Query: 242 KFQDPVQVAC-GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
+A + H V +T G L +WG +G LG G T D P V P
Sbjct: 346 ADTRLTAIAGRDSDHNVTITSAGAAL-AWGANANGELGDGSTTDRSTPVAVSLP 398
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 115/283 (40%), Gaps = 40/283 (14%)
Query: 15 LAIDNAGALWMWGNCPLPDSSTEGGF---SLVSSFTPSPVWDFHGHTVVKVACGSEHVVA 71
LA+ +AG + WG + EG S SS TP V G V VA G++H +A
Sbjct: 100 LALTSAGTVLAWGR------NIEGQLGNGSTTSSSTPVAVSLPTGTRAVAVAAGADHSLA 153
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
L SAG +WG N GQLG G R P + + V + G H
Sbjct: 154 LTSAG--------TILAWGDNTFGQLGDGSTTDRSTPVAVSLPAGTT---VAAIAAGRDH 202
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF 191
+LT T+G GQLG GTT P V LP V + SV G
Sbjct: 203 NLVLTSTG-------PTLLTWGKNTRGQLGDGTTTGRDTPVAVT-LPPGVTVTSVAGGRD 254
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
H+ V++S +WG G N + T D++ PI ++ P + +A
Sbjct: 255 HSLVLTSDDTALAWGGNS-FGQLGNGTTT-----DSLVPIAVA-----LPTGTEATAIAA 303
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
G H+ +T +G ++WG G LG G T D P V P
Sbjct: 304 GRLHSAALTSEGAA-FAWGHNGRGQLGNGSTTDSSEPVAVSLP 345
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 88/211 (41%), Gaps = 23/211 (10%)
Query: 85 VCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDM 144
+WG N+ GQLG G P + + + AV V G H LT
Sbjct: 55 TILAWGENDGGQLGNGTMIDSSEPVAV---SLPAGTAVAAVAVGDRHGLALTSAG----- 106
Query: 145 LESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+ W G GQLG+G+T S+ P V LP V+V G H+ ++SAG + +
Sbjct: 107 -TVLAW--GRNIEGQLGNGSTTSSSTPVAVS-LPTGTRAVAVAAGADHSLALTSAGTILA 162
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG + G + S T D +P+ +S P +A G H +++T G
Sbjct: 163 WG-DNTFGQLGDGSTT-----DRSTPVAVSL-----PAGTTVAAIAAGRDHNLVLTSTGP 211
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
L +WG+ G LG G T P V PP
Sbjct: 212 TLLTWGKNTRGQLGDGTTTGRDTPVAVTLPP 242
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 105/269 (39%), Gaps = 47/269 (17%)
Query: 38 GGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQL 97
G +++ S P V G V VA G H +AL SAG +WG N GQL
Sbjct: 68 GNGTMIDSSEPVAVSLPAGTAVAAVAVGDRHGLALTSAG--------TVLAWGRNIEGQL 119
Query: 98 GLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN 157
G G S P + AV G+ H+ LT + W G+N
Sbjct: 120 GNGSTTSSSTPVAVSLPTGTRAVAVA---AGADHSLALTSAG------TILAW----GDN 166
Query: 158 --GQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAG-DVWSWGMEKGLGLC 214
GQLG G+T P V LP + ++ G H V++S G + +WG
Sbjct: 167 TFGQLGDGSTTDRSTPVAVS-LPAGTTVAAIAAGRDHNLVLTSTGPTLLTWGKN------ 219
Query: 215 PNASLTRNEAGDAIS-----PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
TR + GD + P+ ++ P VA G H++++T D L +W
Sbjct: 220 -----TRGQLGDGTTTGRDTPVAVTL-----PPGVTVTSVAGGRDHSLVLTSDDTAL-AW 268
Query: 270 GRGRSGVLGTGKTIDFFAPAIVLWPPLTE 298
G G LG G T D P V P TE
Sbjct: 269 GGNSFGQLGNGTTTDSLVPIAVALPTGTE 297
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 71/160 (44%), Gaps = 17/160 (10%)
Query: 137 HRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
HR ++ +G + GQLG+GT + P V LP + +V G H +
Sbjct: 44 HRSAATAVVSDTILAWGENDGGQLGNGTMIDSSEPVAVS-LPAGTAVAAVAVGDRHGLAL 102
Query: 197 SSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAA 254
+SAG V +WG +E LG N S T + +P+ +S P V VA GA
Sbjct: 103 TSAGTVLAWGRNIEGQLG---NGSTTSSS-----TPVAVS-----LPTGTRAVAVAAGAD 149
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
H++ +T G L +WG G LG G T D P V P
Sbjct: 150 HSLALTSAGTIL-AWGDNTFGQLGDGSTTDRSTPVAVSLP 188
>gi|55832181|gb|AAV66579.1| HECT and RCC1 containing protein 4 isoform 3 [Homo sapiens]
Length = 979
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTEIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G LV S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLVGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ ++ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKR---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLVGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|332243760|ref|XP_003271040.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Nomascus
leucogenys]
Length = 814
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 128/281 (45%), Gaps = 50/281 (17%)
Query: 7 VKAGGMMSLAIDNAGALWM-----WGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+ G S + L+M WG L G S VS P+ V V
Sbjct: 40 LSCGDEHSAVVTGNNKLYMFGSNNWGQLGL------GSKSAVSK--PTCVKALKPEKVKL 91
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
ACG H + G Y + G NN GQLGLGD E R +I F S
Sbjct: 92 AACGRNHTLVSTEGGNVY--------ATGGNNEGQLGLGDTEERNTFHVISFFT--SEHK 141
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ +++ GS +A LT R + +G GQ+G + VP+QV + + V
Sbjct: 142 IKQLSAGSNTSAALTEDGR--------LFMWGDNSEGQIGLKNVTNVCVPQQVT-IGKPV 192
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPH 239
+S CG +H++ V++ G+++ +G E G LGL PN L G+ +P L+S
Sbjct: 193 SWIS--CGYYHSAFVTTDGELYVFGEPENGKLGL-PNQLL-----GNHRTPQLVS----E 240
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
P + +QVACG HTV++T++ ++++G G+ G LG G
Sbjct: 241 IP--EKVIQVACGGEHTVVLTENA--VYTFGLGQFGQLGLG 277
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 127/291 (43%), Gaps = 52/291 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ S + G + + +N G L L D+ F ++S FT H + +++
Sbjct: 100 LVSTEGGNVYATGGNNEGQLG------LGDTEERNTFHVISFFTSE-------HKIKQLS 146
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS AL ED + WG N+ GQ+GL + + P+ + T + W
Sbjct: 147 AGSNTSAALT--------EDGRLFMWGDNSEGQIGLKNVTNVCVPQQV-TIGKPVSW--- 194
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG--HGTTQSALVPEQVKELPQYV 181
++CG +H+A +T + + FG ENG+LG + + P+ V E+P+ V
Sbjct: 195 -ISCGYYHSAFVT--------TDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSEIPEKV 245
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG HT VV + V+++G+ + L L I I
Sbjct: 246 --IQVACGGEHT-VVLTENAVYTFGLGQFGQLGLGTFLFETSDPKVIENI---------- 292
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG--KTIDFFAPAI 290
+ Q ++CG +HT L+TD G ++++G GR G LG G + F P +
Sbjct: 293 RDQTISYISCGESHTALITDIGL-MYTFGDGRHGKLGLGLENFTNHFIPTL 342
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 40/221 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + AG S A+ G L+MWG+ +S + G V++ P G V +
Sbjct: 141 KIKQLSAGSNTSAALTEDGRLFMWGD----NSEGQIGLKNVTNVC-VPQQVTIGKPVSWI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR--ESRLRPKIIETFNQDSPW 120
+CG H + + GE Y +G NG+LGL ++ + P+++ P
Sbjct: 196 SCGYYHSAFVTTDGE--------LYVFGEPENGKLGLPNQLLGNHRTPQLVSEI----PE 243
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT----TQSALVPEQVKE 176
V +V CG HT +LT E+ +TFGLG+ GQLG GT T V E +++
Sbjct: 244 KVIQVACGGEHTVVLT---------ENAVYTFGLGQFGQLGLGTFLFETSDPKVIENIRD 294
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGL 213
Q + +S CG HT++++ G ++++G + GLGL
Sbjct: 295 --QTISYIS--CGESHTALITDIGLMYTFGDGRHGKLGLGL 331
>gi|426364914|ref|XP_004049536.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
[Gorilla gorilla gorilla]
Length = 979
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTEIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G LV S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLVGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ ++ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F + +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKR---IRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLVGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKRIRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|81885004|sp|Q6NXM2.1|RCBT1_MOUSE RecName: Full=RCC1 and BTB domain-containing protein 1; AltName:
Full=Regulator of chromosome condensation and BTB
domain-containing protein 1
gi|44890811|gb|AAH67005.1| Regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 1 [Mus musculus]
Length = 531
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 108/249 (43%), Gaps = 29/249 (11%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
S+ P + G + ++ GS V L + ED V Y+WG N QLG G
Sbjct: 61 STLVPKKLEALCGKKIKSLSYGSGPHVLLTT-------EDGVVYAWGHNGYSQLGNGTTN 113
Query: 104 SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
+ P ++ V EV CGS H+ L + + +G GQ+G G
Sbjct: 114 QGIAP--VQVCTNLLIKQVIEVACGSHHSMALA--------ADGELFAWGYNNCGQVGSG 163
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE 223
+T + P +V +V++ CG + V +G+V+ WG N L
Sbjct: 164 STANQPTPRKVTNCLHTKRVVNIACGQTSSMAVLDSGEVYGWGYNG------NGQLGLGN 217
Query: 224 AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
G+ ++P+ ++ HG Q+ CG AHT+ +TD+G L++WG G LGTG
Sbjct: 218 NGNQLTPVRVA--ALHGMCVN---QIVCGYAHTLALTDEGL-LYAWGANTYGQLGTGSKN 271
Query: 284 DFFAPAIVL 292
+ +P ++
Sbjct: 272 NLLSPTQIM 280
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 96/214 (44%), Gaps = 29/214 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG--NCPLPDSSTEGGFSLVSSFTPSPVWD-FHGH 57
+ Q+ V G S+A+ G L+ WG NC G S + TP V + H
Sbjct: 127 IKQVIEVACGSHHSMALAADGELFAWGYNNC-----GQVGSGSTANQPTPRKVTNCLHTK 181
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +ACG +A++ +GE Y WG N NGQLGLG+ ++L P + +
Sbjct: 182 RVVNIACGQTSSMAVLDSGEVY--------GWGYNGNGQLGLGNNGNQLTPVRVAALH-- 231
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V ++ CG HT LT E + + +G GQLG G+ + L P Q+
Sbjct: 232 -GMCVNQIVCGYAHTLALTD--------EGLLYAWGANTYGQLGTGSKNNLLSPTQIMVE 282
Query: 178 PQYVYLVSVDCGLFHTSVV-SSAGDVWSWGMEKG 210
+ V ++ C HTS + G V+ WG +G
Sbjct: 283 KERVIEIAA-CHSTHTSAAKTQGGHVYMWGQCRG 315
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 107/262 (40%), Gaps = 40/262 (15%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + V T + V++VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLI-----KQVIEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
+ +WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 LF--------AWGYNNCGQVGSGSTANQPTPRKVT--NCLHTKRVVNIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L + + + CG HT ++
Sbjct: 193 SMAVLDSGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HGMCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTV 257
G +++WG T + G L+S K + AC + HT
Sbjct: 250 DEGLLYAWGAN-----------TYGQLGTGSKNNLLSPTQIMVEKERVIEIAACHSTHTS 298
Query: 258 LVTDDGYKLWSWG--RGRSGVL 277
G ++ WG RG+S +L
Sbjct: 299 AAKTQGGHVYMWGQCRGQSVIL 320
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSNCLGTGDNQSTLVPKKLEALCGKKIKSLSYGSGP-HVLLTTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+P+ + N + ++VACG+ H++ + DG +L++
Sbjct: 103 G------YSQLGNGTTNQGIAPVQVCTN----LLIKQVIEVACGSHHSMALAADG-ELFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAPAIV 291
WG G +G+G T + P V
Sbjct: 152 WGYNNCGQVGSGSTANQPTPRKV 174
>gi|363733282|ref|XP_420476.3| PREDICTED: E3 ISG15--protein ligase HERC5 [Gallus gallus]
Length = 560
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 94/209 (44%), Gaps = 25/209 (11%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G S+A+ G+L+ WG L+S P V G + ++A
Sbjct: 85 IVQIACGDHHSMALSRGGSLFTWGQNTHGQLGVGSQDLLISK--PQLVKGLKGIPLAQIA 142
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G H V + +G YSWG N+ GQLGLG E R P +E W
Sbjct: 143 AGGAHSVVVSLSGAV--------YSWGKNDFGQLGLGHTEDRDCPSYVEALEH---WKAV 191
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL-PQYVY 182
++CG HTA+L+ + +TFG G GQLGH +T++ P V EL V
Sbjct: 192 FISCGEDHTAVLSK--------NGLVFTFGAGGAGQLGHNSTRNEFRPRMVAELWGARVS 243
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKG 210
LV+ CG HT V V S V+S+G +G
Sbjct: 244 LVA--CGRQHTLVYVPSLDKVYSFGSYEG 270
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 151/342 (44%), Gaps = 56/342 (16%)
Query: 51 VWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL-RPK 109
V + + +V++ACG H +AL G + +WG N +GQLG+G ++ + +P+
Sbjct: 77 VKELENNDIVQIACGDHHSMALSRGGSLF--------TWGQNTHGQLGVGSQDLLISKPQ 128
Query: 110 IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
+++ + P A ++ G H+ +++ L +++G + GQLG G T+
Sbjct: 129 LVKGL-KGIPLA--QIAAGGAHSVVVS--------LSGAVYSWGKNDFGQLGLGHTEDRD 177
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
P V+ L + V + CG HT+V+S G V+++G L N+ TRNE
Sbjct: 178 CPSYVEALEHW-KAVFISCGEDHTAVLSKNGLVFTFGAGGAGQLGHNS--TRNE----FR 230
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA 289
P +++ G + VACG HT++ K++S+G G LG+ + + P
Sbjct: 231 PRMVAE--LWGARVS---LVACGRQHTLVYVPSLDKVYSFG-SYEGQLGSERKANQLIPL 284
Query: 290 IVLWPPLTEEFKQDELNTGGLDDEIKTKD--------------------LEGAEERDEKL 329
+ P ++ Q+ + ++ + ++ LE E
Sbjct: 285 PINSPVDNGKYCQENTSQNVIETTAEGRENIVDLLFKKRNSYPVNGIATLERKEVNAWVS 344
Query: 330 SSAMEEMKLLQSKLSVMERYASILHGSIF---GKPFAAEQDI 368
+S E K+++ + ++ + ++GS GK F Q+I
Sbjct: 345 NSCSEHWKIIKKNIGLIFSSEACINGSFLDKRGKHFKTSQEI 386
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 107/247 (43%), Gaps = 45/247 (18%)
Query: 51 VWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKI 110
VW V + C HV+ G+ Y+ C++ +L L +
Sbjct: 33 VWFKGKEKVWCLNCDETHVLVCSCDGKLYE-----CWTTAPGKTSKLRL----------V 77
Query: 111 IETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALV 170
E N D + ++ CG H+ L+ R + +T+G +GQLG G+ Q L+
Sbjct: 78 KELENND----IVQIACGDHHSMALS---RGGSL-----FTWGQNTHGQLGVGS-QDLLI 124
Query: 171 --PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
P+ VK L + + L + G H+ VVS +G V+SWG + G L E D
Sbjct: 125 SKPQLVKGL-KGIPLAQIAAGGAHSVVVSLSGAVYSWG-KNDFG---QLGLGHTEDRDCP 179
Query: 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
S + + V ++CG HT +++ +G ++++G G +G LG T + F P
Sbjct: 180 SYV-------EALEHWKAVFISCGEDHTAVLSKNGL-VFTFGAGGAGQLGHNSTRNEFRP 231
Query: 289 AIV--LW 293
+V LW
Sbjct: 232 RMVAELW 238
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 26/170 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ + AGG S+ + +GA++ WG D G PS V V ++
Sbjct: 138 LAQIAAGGAHSVVVSLSGAVYSWGK---NDFGQLGLGHTEDRDCPSYVEALEHWKAVFIS 194
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA-- 121
CG +H L G + +++GA GQLG + RP+++ W
Sbjct: 195 CGEDHTAVLSKNG--------LVFTFGAGGAGQLGHNSTRNEFRPRMVAEL-----WGAR 241
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
V V CG HT + P+ L+ + ++FG E GQLG + L+P
Sbjct: 242 VSLVACGRQHTLVYV----PS--LDKV-YSFGSYE-GQLGSERKANQLIP 283
>gi|169808411|ref|NP_082040.2| RCC1 and BTB domain-containing protein 1 [Mus musculus]
gi|26329171|dbj|BAC28324.1| unnamed protein product [Mus musculus]
gi|148704196|gb|EDL36143.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 1, isoform CRA_a [Mus musculus]
Length = 531
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 108/249 (43%), Gaps = 29/249 (11%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
S+ P + G + ++ GS V L + ED V Y+WG N QLG G
Sbjct: 61 STLVPKKLEALCGKKIKSLSYGSGPHVLLTT-------EDGVVYAWGHNGYSQLGNGTTN 113
Query: 104 SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
+ P ++ V EV CGS H+ L + + +G GQ+G G
Sbjct: 114 QGIAP--VQVCTNLLIKQVIEVACGSHHSMALA--------ADGELFAWGYNNCGQVGSG 163
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE 223
+T + P +V +V++ CG + V +G+V+ WG N L
Sbjct: 164 STANQPTPRKVTNCLHTKRVVNIACGQTSSMAVLDSGEVYGWGYNG------NGQLGLGN 217
Query: 224 AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
G+ ++P+ ++ HG Q+ CG AHT+ +TD+G L++WG G LGTG
Sbjct: 218 NGNQLTPVRVA--ALHGMCVN---QIVCGYAHTLALTDEGL-LYAWGANTYGQLGTGSKN 271
Query: 284 DFFAPAIVL 292
+ +P ++
Sbjct: 272 NLLSPTQIM 280
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 96/214 (44%), Gaps = 29/214 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG--NCPLPDSSTEGGFSLVSSFTPSPVWD-FHGH 57
+ Q+ V G S+A+ G L+ WG NC G S + TP V + H
Sbjct: 127 IKQVIEVACGSHHSMALAADGELFAWGYNNC-----GQVGSGSTANQPTPRKVTNCLHTK 181
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +ACG +A++ +GE Y WG N NGQLGLG+ ++L P + +
Sbjct: 182 RVVNIACGQTSSMAVLDSGEVY--------GWGYNGNGQLGLGNNGNQLTPVRVAALH-- 231
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V ++ CG HT LT E + + +G GQLG G+ + L P Q+
Sbjct: 232 -GMCVNQIVCGYAHTLALTD--------EGLLYAWGANTYGQLGTGSKNNLLSPTQIMVE 282
Query: 178 PQYVYLVSVDCGLFHTSVV-SSAGDVWSWGMEKG 210
+ V ++ C HTS + G V+ WG +G
Sbjct: 283 KERVIEIAA-CHSTHTSAAKTQGGHVYMWGQCRG 315
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 107/262 (40%), Gaps = 40/262 (15%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + V T + V++VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLI-----KQVIEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
+ +WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 LF--------AWGYNNCGQVGSGSTANQPTPRKVT--NCLHTKRVVNIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L + + + CG HT ++
Sbjct: 193 SMAVLDSGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HGMCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTV 257
G +++WG T + G L+S K + AC + HT
Sbjct: 250 DEGLLYAWGAN-----------TYGQLGTGSKNNLLSPTQIMVEKERVIEIAACHSTHTS 298
Query: 258 LVTDDGYKLWSWG--RGRSGVL 277
G ++ WG RG+S +L
Sbjct: 299 AAKTQGGHVYMWGQCRGQSVIL 320
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSNCLGTGDNQSTLVPKKLEALCGKKIKSLSYGSGP-HVLLTTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+P+ + N + ++VACG+ H++ + DG +L++
Sbjct: 103 G------YSQLGNGTTNQGIAPVQVCTN----LLIKQVIEVACGSHHSMALAADG-ELFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAPAIV 291
WG G +G+G T + P V
Sbjct: 152 WGYNNCGQVGSGSTANQPTPRKV 174
>gi|440898467|gb|ELR49962.1| RCC1 and BTB domain-containing protein 1 [Bos grunniens mutus]
Length = 531
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G L P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGLAP--IQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLSPAHIM 280
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 125/321 (38%), Gaps = 52/321 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGLAPIQVCTNLLI-----KQVVEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
++WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 V--------FAWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKRVVGIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTV 257
G +++WG T + G L+S K + AC +AHT
Sbjct: 250 DEGLLYAWGAN-----------TYGQLGTGNKNNLLSPAHIMVEKERVIEIAACHSAHTS 298
Query: 258 LVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNTG 308
G ++ WG RG+S L T FA V W L+ E +D L
Sbjct: 299 AAKTQGGHVYMWGQCRGQSVTLPHLTHLSSTDDVFACFATPAVTWRLLSVE-HEDFLTVA 357
Query: 309 GLDDEIKTKDLEGAEERDEKL 329
E K+ + E D K
Sbjct: 358 ----ESLKKEFDSPETADLKF 374
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G S LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSSCLGTGDNHSTLVPKKLEALCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L ++PI + N + V+VACG+ H++ + DG ++++
Sbjct: 103 G------YSQLGNGTTNQGLAPIQVCTN----LLIKQVVEVACGSHHSMALAADG-EVFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 152 WGYNNCGQVGSGSTANQPTP 171
>gi|332218229|ref|XP_003258261.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
[Nomascus leucogenys]
Length = 979
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLVGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-VGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|300794911|ref|NP_001178141.1| RCC1 and BTB domain-containing protein 1 [Bos taurus]
gi|296481892|tpg|DAA24007.1| TPA: regulator of chromosome condensation (RCC1) and BTB (POZ)
domain containing protein 1 [Bos taurus]
Length = 531
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G L P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGLAP--IQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLSPAHIM 280
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 125/321 (38%), Gaps = 52/321 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGLAPIQVCTNLLI-----KQVVEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
++WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 V--------FAWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKRVVGIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTV 257
G +++WG T + G L+S K + AC +AHT
Sbjct: 250 DEGLLYAWGAN-----------TYGQLGTGNKNNLLSPAHIMVEKERVIEIAACHSAHTS 298
Query: 258 LVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNTG 308
G ++ WG RG+S L T FA V W L+ E +D L
Sbjct: 299 AAKTQGGHVYMWGQCRGQSVTLPHLTHLSSTDDVFACFATPAVTWRLLSVE-HEDFLTVA 357
Query: 309 GLDDEIKTKDLEGAEERDEKL 329
E K+ + E D K
Sbjct: 358 ----ESLKKEFDSPETADLKF 374
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G S LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSSCLGTGDNHSTLVPKKLEALCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L ++PI + N + V+VACG+ H++ + DG ++++
Sbjct: 103 G------YSQLGNGTTNQGLAPIQVCTN----LLIKQVVEVACGSHHSMALAADG-EVFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 152 WGYNNCGQVGSGSTANQPTP 171
>gi|426236339|ref|XP_004012127.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Ovis aries]
Length = 531
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G L P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGLAP--IQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLSPAHIM 280
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 125/321 (38%), Gaps = 52/321 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGLAPIQVCTNLLI-----KQVVEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
++WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 V--------FAWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKRVVGIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTV 257
G +++WG T + G L+S K + AC +AHT
Sbjct: 250 DEGLLYAWGAN-----------TYGQLGTGNKNNLLSPAHIMVEKERVIEIAACHSAHTS 298
Query: 258 LVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNTG 308
G ++ WG RG+S L T FA V W L+ E +D L
Sbjct: 299 AAKTQGGHVYMWGQCRGQSVTLPHLTHFSSTDDVFACFATPAVTWRLLSAE-HEDFLTVA 357
Query: 309 GLDDEIKTKDLEGAEERDEKL 329
E K+ + E D K
Sbjct: 358 ----ESLKKEFDSPETADLKF 374
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 13/136 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS LVP+++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSNCLGTGDNQSTLVPKKLDALCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L ++PI + N + V+VACG+ H++ + DG ++++
Sbjct: 103 G------YSQLGNGTTNQGLAPIQVCTN----LLIKQVVEVACGSHHSMALAADG-EVFA 151
Query: 269 WGRGRSGVLGTGKTID 284
WG G +G+G T +
Sbjct: 152 WGYNNCGQVGSGSTAN 167
>gi|114630750|ref|XP_001167753.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 8
[Pan troglodytes]
gi|410295452|gb|JAA26326.1| hect domain and RLD 4 [Pan troglodytes]
gi|410333085|gb|JAA35489.1| hect domain and RLD 4 [Pan troglodytes]
Length = 1057
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G LV S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLVGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKR---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLVGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|428163598|gb|EKX32661.1| hypothetical protein GUITHDRAFT_148483 [Guillardia theta CCMP2712]
Length = 407
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 111/260 (42%), Gaps = 41/260 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G SLA+D G LW WG C G S P V + V
Sbjct: 45 RIVEVACGSSHSLAVDENGGLWGWG-CHKFGQLGLGDVGQESLKLPHQVDLLRSTLIASV 103
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR----------ESRLRPKIIE 112
A G +H +AL S G + +SWG N G LG G+ +S L P+
Sbjct: 104 AAGDKHSIALSSQG--------IVFSWGLNGYGCLGAGNARKNYPDFVEDDSLLFPEPFR 155
Query: 113 TFNQDSPW----AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA 168
NQ + ++ ++ G FH+A + + + +T+G G GQLG G
Sbjct: 156 VCNQPTRVNIEDSIAAISAGLFHSAAVGEKGK--------LYTWGKGGEGQLGSGMMADL 207
Query: 169 LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
VP VK+L ++ + CG FHT+ +++ G+++ WG L LTR + + +
Sbjct: 208 YVPAAVKDL-KHKNITKAACGSFHTAALTNEGELYVWGWAGDCNL-----LTRERSDEPL 261
Query: 229 SPILISGNGPHGPKFQDPVQ 248
P+L P + +D VQ
Sbjct: 262 GPVL----RPRRLQLKDKVQ 277
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 83/181 (45%), Gaps = 24/181 (13%)
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT--QSALVPEQVKELPQ 179
+ EV CGS H+ + W +G + GQLG G +S +P QV +L +
Sbjct: 46 IVEVACGSSHSLAVDE--------NGGLWGWGCHKFGQLGLGDVGQESLKLPHQV-DLLR 96
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS--------PI 231
+ SV G H+ +SS G V+SWG+ G G C A R D + P
Sbjct: 97 STLIASVAAGDKHSIALSSQGIVFSWGL-NGYG-CLGAGNARKNYPDFVEDDSLLFPEPF 154
Query: 232 LISGNGPHGPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ N P +D + ++ G H+ V + G KL++WG+G G LG+G D + PA
Sbjct: 155 RVC-NQPTRVNIEDSIAAISAGLFHSAAVGEKG-KLYTWGKGGEGQLGSGMMADLYVPAA 212
Query: 291 V 291
V
Sbjct: 213 V 213
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 102/239 (42%), Gaps = 53/239 (22%)
Query: 54 FHGH----TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD--RESRLR 107
F GH +V+VACGS H +A+ G + WG + GQLGLGD +ES
Sbjct: 37 FQGHLRGVRIVEVACGSSHSLAVDENGGL--------WGWGCHKFGQLGLGDVGQESLKL 88
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ- 166
P ++ + V G H+ L+ + + +++GL G LG G +
Sbjct: 89 PHQVDLLRST---LIASVAAGDKHSIALSS--------QGIVFSWGLNGYGCLGAGNARK 137
Query: 167 ---------SALVPE--QVKELPQYV----YLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
S L PE +V P V + ++ GLFH++ V G +++WG KG
Sbjct: 138 NYPDFVEDDSLLFPEPFRVCNQPTRVNIEDSIAAISAGLFHSAAVGEKGKLYTWG--KG- 194
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG 270
L D P + K ++ + ACG+ HT +T++G +L+ WG
Sbjct: 195 ---GEGQLGSGMMADLYVPAAVK-----DLKHKNITKAACGSFHTAALTNEG-ELYVWG 244
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 49/122 (40%), Gaps = 22/122 (18%)
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGN 236
V +V V CG H+ V G +W WG K GLG SL D + LI+
Sbjct: 44 VRIVEVACGSSHSLAVDENGGLWGWGCHKFGQLGLGDVGQESLKLPHQVDLLRSTLIA-- 101
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI----DFFAPAIVL 292
VA G H++ ++ G ++SWG G LG G DF +L
Sbjct: 102 -----------SVAAGDKHSIALSSQGI-VFSWGLNGYGCLGAGNARKNYPDFVEDDSLL 149
Query: 293 WP 294
+P
Sbjct: 150 FP 151
>gi|397520491|ref|XP_003830350.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
[Pan paniscus]
gi|410221280|gb|JAA07859.1| hect domain and RLD 4 [Pan troglodytes]
gi|410259924|gb|JAA17928.1| hect domain and RLD 4 [Pan troglodytes]
Length = 1049
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G LV S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLVGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKR---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLVGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|118397447|ref|XP_001031056.1| RCC1-like domain protein 3, HECT domain [Tetrahymena thermophila]
gi|89285378|gb|EAR83393.1| RCC1-like domain protein 3, HECT domain [Tetrahymena thermophila
SB210]
Length = 1146
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 115/247 (46%), Gaps = 46/247 (18%)
Query: 43 VSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
++ F P+ F G V++VACG H +AL + YSWG + ++G
Sbjct: 620 INKFQMIPI--FKGIKVLQVACGDYHTLALTDTDQV--------YSWGGTLHKKVG---- 665
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG----ENG 158
+ +P I+ N+ V +V CG +H+A +T +T+G G G
Sbjct: 666 QRSGKPAPIQQLNKK---GVIQVDCGDYHSAAITQN--------GDIYTWGGGGQDYNKG 714
Query: 159 QLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNAS 218
QLG G + PE++K + +V V CG FHT ++S +++ WG G
Sbjct: 715 QLGLGHVKDIENPEKLK-FFEGKKIVKVSCGQFHTMALTSENELFGWGA----GEFGELG 769
Query: 219 LTRNEAGDAISPILISGNGPH------GPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGR 271
+++E +PI + N F++ +Q + CG HT+L+T++GY ++S G
Sbjct: 770 TSKHE----YTPIRVKVNFNQYNILYENILFENSIQNIKCGGHHTLLLTNNGY-IYSSGY 824
Query: 272 GRSGVLG 278
GR G LG
Sbjct: 825 GRQGQLG 831
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 29/213 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF-TPSPVWDFHGHTVVKV 62
+ V G S AI G ++ WG + + G V P + F G +VKV
Sbjct: 682 VIQVDCGDYHSAAITQNGDIYTWGGGGQDYNKGQLGLGHVKDIENPEKLKFFEGKKIVKV 741
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE-SRLRPKIIETFNQDSPW- 120
+CG H +AL S E + WGA G+LG E + +R K+ FNQ +
Sbjct: 742 SCGQFHTMALTSENE--------LFGWGAGEFGELGTSKHEYTPIRVKV--NFNQYNILY 791
Query: 121 -------AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
++ + CG HT LLT+ ++ G G GQLG +++ +
Sbjct: 792 ENILFENSIQNIKCGGHHTLLLTNN--------GYIYSSGYGRQGQLGLRNSENQCEFQL 843
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
V L + ++ + G H+ +S D+++ G
Sbjct: 844 VWTLTK-KKIIKIAAGWNHSLALSDQNDIFACG 875
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 100/235 (42%), Gaps = 54/235 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ +++ H + + GE Y VC G+ +G+LGL + L I F
Sbjct: 580 IKQISTSQNHSACISANGELY-----VC---GSALHGKLGLEE----LTMANINKFQMIP 627
Query: 119 PWA---VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
+ V +V CG +HT LT D + W G L Q + P ++
Sbjct: 628 IFKGIKVLQVACGDYHTLALT------DTDQVYSW------GGTLHKKVGQRSGKPAPIQ 675
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG-----MEKG-LGLCPNASLTRNEAGDAIS 229
+L + ++ VDCG +H++ ++ GD+++WG KG LGL +
Sbjct: 676 QLNKKG-VIQVDCGDYHSAAITQNGDIYTWGGGGQDYNKGQLGLGHVKDIE--------- 725
Query: 230 PILISGNGPHGPKF---QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
P KF + V+V+CG HT+ +T + +L+ WG G G LGT K
Sbjct: 726 -------NPEKLKFFEGKKIVKVSCGQFHTMALTSEN-ELFGWGAGEFGELGTSK 772
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 21/107 (19%)
Query: 4 ICSVKAGGMMSLAIDNAGALW-----MWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
I ++K GG +L + N G ++ G L +S + F LV W
Sbjct: 800 IQNIKCGGHHTLLLTNNGYIYSSGYGRQGQLGLRNSENQCEFQLV--------WTLTKKK 851
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
++K+A G H +AL + + + G GQLGLGD ESR
Sbjct: 852 IIKIAAGWNHSLALSDQNDIF--------ACGHGARGQLGLGDEESR 890
>gi|344281814|ref|XP_003412672.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Loxodonta
africana]
Length = 531
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGVAP--IQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKKVVGIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA VL
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLSPAHVL 280
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 95/214 (44%), Gaps = 29/214 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG--NCPLPDSSTEGGFSLVSSFTPSPVWD-FHGH 57
+ Q+ V G S+A+ G ++ WG NC G S + TP V + H
Sbjct: 127 IKQVVEVACGSHHSMALAADGEVFAWGYNNC-----GQVGSGSTANQPTPRKVTNCLHIK 181
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +ACG +A++ GE Y WG N NGQLGLG+ ++L P + +
Sbjct: 182 KVVGIACGQTSSMAVLDNGEVY--------GWGYNGNGQLGLGNNGNQLTPVRVAALHS- 232
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V ++ CG HT LT E + + +G GQLG G + L P V
Sbjct: 233 --VCVNQIVCGYAHTLALTD--------EGLLYAWGANTYGQLGTGNKNNLLSPAHVLVE 282
Query: 178 PQYVYLVSVDCGLFHTSVV-SSAGDVWSWGMEKG 210
+ V ++ C HTS + +G+V+ WG +G
Sbjct: 283 KERVVEIAA-CHSAHTSAAKTQSGNVYMWGQCRG 315
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 136/347 (39%), Gaps = 53/347 (15%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGVAPIQVCTNLLI-----KQVVEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
+ +WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 VF--------AWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKKVVGIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTV 257
G +++WG T + G L+S K + AC +AHT
Sbjct: 250 DEGLLYAWGAN-----------TYGQLGTGNKNNLLSPAHVLVEKERVVEIAACHSAHTS 298
Query: 258 LVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNTG 308
++ WG RG+S L T FA V W L+ E +D L
Sbjct: 299 AAKTQSGNVYMWGQCRGQSVTLPHLTHFSCTDDVFACFATPAVTWRLLSVE-HEDFLTVA 357
Query: 309 GLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSV-MERYASILH 354
E ++ + E D K + + + ++ L + E + S+ H
Sbjct: 358 ----ESLKQEFDSPETADLKFRIDGKYIHVHKAVLKIRCEHFRSMFH 400
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF-HTSVVSSAGDVWSWGME 208
+ FG+ + LG G QS LVP++++ L + S+ G H + + G V++WG
Sbjct: 44 FVFGMNYSNCLGTGDNQSTLVPKKLEALCGK-KIKSLSYGSAPHVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L ++PI + N + V+VACG+ H++ + DG ++++
Sbjct: 103 G------YSQLGNGTTNQGVAPIQVCTN----LLIKQVVEVACGSHHSMALAADG-EVFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 152 WGYNNCGQVGSGSTANQPTP 171
>gi|18073943|emb|CAC86116.1| retinitis pigmentosa GTPase regulator [Homo sapiens]
Length = 815
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 113/235 (48%), Gaps = 37/235 (15%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+ V V ACG H + G Y + G NN GQLGLGD E R
Sbjct: 78 PTCVKALKPEKVKLAACGRNHTLVSTEGGNVY--------ATGGNNEGQLGLGDTEERNT 129
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
+I F S + +++ GS +A LT R + +G GQ+G +
Sbjct: 130 FHVISFFT--SEHKIKQLSAGSNTSAALTEDGR--------LFMWGDNSEGQIGLKNVSN 179
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAG 225
VP+QV + V +S CG +H++ V++ G+++ +G E G LGL PN L G
Sbjct: 180 VCVPQQVT-IGNPVSWIS--CGYYHSAFVTTDGELYVFGEPENGKLGL-PNQLL-----G 230
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ +P L+S P + +QVACG HTV++T++ ++++G G+ G LG G
Sbjct: 231 NHRTPQLVS----EIP--EKVIQVACGGEHTVVLTENA--VYTFGLGQFGQLGLG 277
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 125/291 (42%), Gaps = 52/291 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ S + G + + +N G L L D+ F ++S FT H + +++
Sbjct: 100 LVSTEGGNVYATGGNNEGQLG------LGDTEERNTFHVISFFTSE-------HKIKQLS 146
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS AL ED + WG N+ GQ+GL + + P+ + T W
Sbjct: 147 AGSNTSAALT--------EDGRLFMWGDNSEGQIGLKNVSNVCVPQQV-TIGNPVSW--- 194
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG--HGTTQSALVPEQVKELPQYV 181
++CG +H+A +T + + FG ENG+LG + + P+ V E+P+ V
Sbjct: 195 -ISCGYYHSAFVT--------TDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSEIPEKV 245
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG HT VV + V+++G+ + L L I I
Sbjct: 246 --IQVACGGEHT-VVLTENAVYTFGLGQFGQLGLGTFLFETSEPKVIENI---------- 292
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG--KTIDFFAPAI 290
+ Q ++CG HT L+TD G ++++G GR G LG G + F P +
Sbjct: 293 RDQTISYISCGENHTALITDIGL-MYTFGDGRHGKLGLGLENFTNHFIPTL 342
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 40/221 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + AG S A+ G L+MWG+ +S + G VS+ P G+ V +
Sbjct: 141 KIKQLSAGSNTSAALTEDGRLFMWGD----NSEGQIGLKNVSNVC-VPQQVTIGNPVSWI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR--ESRLRPKIIETFNQDSPW 120
+CG H + + GE Y +G NG+LGL ++ + P+++ P
Sbjct: 196 SCGYYHSAFVTTDGE--------LYVFGEPENGKLGLPNQLLGNHRTPQLVSEI----PE 243
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT----TQSALVPEQVKE 176
V +V CG HT +LT E+ +TFGLG+ GQLG GT T V E +++
Sbjct: 244 KVIQVACGGEHTVVLT---------ENAVYTFGLGQFGQLGLGTFLFETSEPKVIENIRD 294
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGL 213
Q + +S CG HT++++ G ++++G + GLGL
Sbjct: 295 --QTISYIS--CGENHTALITDIGLMYTFGDGRHGKLGLGL 331
>gi|403222935|dbj|BAM41066.1| chromosome condensation protein [Theileria orientalis strain
Shintoku]
Length = 2619
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 129/292 (44%), Gaps = 50/292 (17%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
++ WG P + G + +S P + F G + +VACG H LVS+ + +
Sbjct: 1015 VYSWGKVPF--NCLGQGVDVSTSEYPKIIPFFSGRKIAQVACGDYHSAVLVSSSKQHPNA 1072
Query: 83 DLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSP-W----------------AVYE 124
V +++G N+G+LG D S + + I T ++D P W A+
Sbjct: 1073 GTV-FTFGLGNSGRLGYHIDTNSDVLSQQIGTEDKDEPSWCTHTPQPVGLSIGLRNAIVS 1131
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
+ CG+ HT + T ++ +++G+G G LG G+ + P +V +++
Sbjct: 1132 IACGANHTLVTT--------VDGCVYSWGMGAYGVLGTGSVANRYNPVKVVFPSDNIFIS 1183
Query: 185 SVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
G H+ + G+VWSWG GLG TRN +P LI +
Sbjct: 1184 KCCAGSRHSMALDKEGNVWSWGYGGNGRLGLG------STRN----YYTPNLIRIFDTY- 1232
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI-DFFAPAIV 291
+ Q++CG +H+ + G +++WG R G LG GK + D PA+V
Sbjct: 1233 ----EVFQISCGDSHSACLDRFG-TVYTWGCCRGGKLGLGKIVSDVLEPAVV 1279
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 121/294 (41%), Gaps = 44/294 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I S+ G +L G ++ WG + G S+ + + P V + +
Sbjct: 1129 IVSIACGANHTLVTTVDGCVYSWG---MGAYGVLGTGSVANRYNPVKVVFPSDNIFISKC 1185
Query: 64 C-GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
C GS H +AL G + SWG NG+LGLG + P +I F+ + V
Sbjct: 1186 CAGSRHSMALDKEGNVW--------SWGYGGNGRLGLGSTRNYYTPNLIRIFDT---YEV 1234
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
++++CG H+A L D ++ +T+G G+LG G S ++ V E + +
Sbjct: 1235 FQISCGDSHSACL-------DRFGTV-YTWGCCRGGKLGLGKIVSDVLEPAVVESLKGTH 1286
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGL-----GLCPNASLTRNEAGDAISPILISGNG 237
++ + CG +T +S++G ++ WG G GL N D + G
Sbjct: 1287 IIQIACGTGNTLALSASGKIYQWGCTLGFNKQSEGLISNIDYVPQPVPDTGFKNVFIAAG 1346
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P+ +C A + + D L +WG G LG G + D AP V
Sbjct: 1347 PY----------SCAAIN--IFGD----LLTWGLGTGYRLGHGDSKDHVAPKFV 1384
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 78/361 (21%), Positives = 141/361 (39%), Gaps = 113/361 (31%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S+ C AG S+A+D G +W WG N L ST + +TP+ + F +
Sbjct: 1182 ISKCC---AGSRHSMALDKEGNVWSWGYGGNGRLGLGSTR------NYYTPNLIRIFDTY 1232
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR-LRPKIIETFNQ 116
V +++CG H L G Y+WG G+LGLG S L P ++E+
Sbjct: 1233 EVFQISCGDSHSACLDRFG--------TVYTWGCCRGGKLGLGKIVSDVLEPAVVESLKG 1284
Query: 117 DSPWAVYEVTCGSFHTALLT-------------HRKRPNDMLESMCW------------- 150
+ ++ CG+ +T L+ K+ ++ ++ +
Sbjct: 1285 TH---IIQIACGTGNTLALSASGKIYQWGCTLGFNKQSEGLISNIDYVPQPVPDTGFKNV 1341
Query: 151 -------------------TFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS------ 185
T+GLG +LGHG ++ + P+ V L +Y+ +
Sbjct: 1342 FIAAGPYSCAAINIFGDLLTWGLGTGYRLGHGDSKDHVAPKFVSHLRTRIYIDTLLKVYD 1401
Query: 186 -------------------------VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
+ G H +++ G V++WG+ G G + T
Sbjct: 1402 ETPMELQDNVKAGATNAHDEKRIQQIAVGDGHGVLLTCNGTVYTWGVNNGTGY----NST 1457
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
+++ P+L + F + ++ACG+ H++ +T +G L++WG +G LG
Sbjct: 1458 KDQIESYSEPMLFN-------HFSSKISKIACGSNHSLAITVNGL-LFTWGCNDNGQLGQ 1509
Query: 280 G 280
G
Sbjct: 1510 G 1510
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 109/255 (42%), Gaps = 52/255 (20%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANN-NGQLGLGDR-ESRLRPKIIETFNQ 116
+ ++A G H V L G Y+WG NN G D+ ES P + F+
Sbjct: 1424 IQQIAVGDGHGVLLTCNG--------TVYTWGVNNGTGYNSTKDQIESYSEPMLFNHFSS 1475
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ ++ CGS H+ +T + + +T+G +NGQLG G +S ++P+ V
Sbjct: 1476 ----KISKIACGSNHSLAIT--------VNGLLFTWGCNDNGQLGQGDLRSRVIPDHV-- 1521
Query: 177 LPQYVYLVSVDCGLFHTSVVSSA----------GDVWSWGMEKGLGLCPNASLTRNEAGD 226
P ++V G+ ++ + S+ G +W +G C L
Sbjct: 1522 -PYIENCINVFAGVDNSGCICSSNHEDFMKDDYGTLWVFGSSS----CGKLGLGEALTST 1576
Query: 227 AISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFF 286
++P I+ ++A G H+V++T +G L+S G G G LGTG T ++F
Sbjct: 1577 VMTPREIT-------TVTGVYKLALGTMHSVVLTHEG-SLYSAGAGTGGRLGTGDTSNYF 1628
Query: 287 APAIVLWPPLTEEFK 301
++ P+ E K
Sbjct: 1629 -----VFTPVKTEVK 1638
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 113/258 (43%), Gaps = 38/258 (14%)
Query: 21 GALWMWG-NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETY 79
G ++ WG N +ST+ + S++ +++ + K+ACGS H +A+ G
Sbjct: 1441 GTVYTWGVNNGTGYNSTKDQ---IESYSEPMLFNHFSSKISKIACGSNHSLAITVNG--- 1494
Query: 80 KGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRK 139
+ ++WG N+NGQLG GD SR+ P + V G ++ +
Sbjct: 1495 -----LLFTWGCNDNGQLGQGDLRSRVIPDHVPYIEN-----CINVFAGVDNSGCICSSN 1544
Query: 140 RPNDMLESM--CWTFGLGENGQLGHG--TTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
+ M + W FG G+LG G T + + P ++ + VY +++ G H+ V
Sbjct: 1545 HEDFMKDDYGTLWVFGSSSCGKLGLGEALTSTVMTPREITTVTG-VYKLAL--GTMHSVV 1601
Query: 196 VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
++ G ++S G G R GD S + KF D V G++H
Sbjct: 1602 LTHEGSLYSAGAGTG---------GRLGTGDT-SNYFVFTPVKTEVKFVD---VCAGSSH 1648
Query: 256 TVLVTDDGYKLWSWGRGR 273
++ ++ D +L+ WG G+
Sbjct: 1649 SLAISVDN-ELYGWGEGK 1665
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 26/133 (19%)
Query: 183 LVSVDCGLFHTSVVSS-------AGDVWSWGM----EKGLGLCPNASLTRNEAG--DAIS 229
+ V CG +H++V+ S AG V+++G+ G + N+ + + G D
Sbjct: 1049 IAQVACGDYHSAVLVSSSKQHPNAGTVFTFGLGNSGRLGYHIDTNSDVLSQQIGTEDKDE 1108
Query: 230 PILISGNGPHGPK--------FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
P + H P+ V +ACGA HT++ T DG ++SWG G GVLGTG
Sbjct: 1109 PSWCT----HTPQPVGLSIGLRNAIVSIACGANHTLVTTVDGC-VYSWGMGAYGVLGTGS 1163
Query: 282 TIDFFAPAIVLWP 294
+ + P V++P
Sbjct: 1164 VANRYNPVKVVFP 1176
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 66/314 (21%), Positives = 113/314 (35%), Gaps = 57/314 (18%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+ I + G +LA+ +G ++ WG C L + G + P PV D G V
Sbjct: 1285 THIIQIACGTGNTLALSASGKIYQWG-CTLGFNKQSEGLISNIDYVPQPVPD-TGFKNVF 1342
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ----D 117
+A G A+ G DL+ +WG +LG GD + + PK + D
Sbjct: 1343 IAAGPYSCAAINIFG------DLL--TWGLGTGYRLGHGDSKDHVAPKFVSHLRTRIYID 1394
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPND---------------MLESMCWTFGLGENGQLGH 162
+ VY+ T + +D +L + G N G+
Sbjct: 1395 TLLKVYDETPMELQDNVKAGATNAHDEKRIQQIAVGDGHGVLLTCNGTVYTWGVNNGTGY 1454
Query: 163 GTTQSALVPEQVKELPQYVYLVS----VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNAS 218
+T+ + E E + + S + CG H+ ++ G +++WG N
Sbjct: 1455 NSTKDQI--ESYSEPMLFNHFSSKISKIACGSNHSLAITVNGLLFTWGCND------NGQ 1506
Query: 219 LTRNEAGDAISPILISGNGPHGPKFQDPVQV---------ACGAAHTVLVTDDGYKLWSW 269
L + + + P H P ++ + V C + H + DD LW +
Sbjct: 1507 LGQGDLRSRVIP-------DHVPYIENCINVFAGVDNSGCICSSNHEDFMKDDYGTLWVF 1559
Query: 270 GRGRSGVLGTGKTI 283
G G LG G+ +
Sbjct: 1560 GSSSCGKLGLGEAL 1573
>gi|403303318|ref|XP_003942281.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Saimiri
boliviensis boliviensis]
Length = 531
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGVAP--IQVCTNLLIKKVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V + +V + CG + V G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHFKRVVGIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLNPAHIM 280
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 129/322 (40%), Gaps = 54/322 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGVAPIQVCTNLLI-----KKVVEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
+ +WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 VF--------AWGYNNCGQVGSGSTANQPTPRKVT--NCLHFKRVVGIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA-CGAAHT 256
G +++WG L + ++P I + + V++A C +AHT
Sbjct: 250 DEGLLYAWGAN------TYGQLGTGNKNNLLNPAHIM------VEKERVVEIAACHSAHT 297
Query: 257 VLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNT 307
G ++ WG RG+S +L T FA V W L+ E +D L
Sbjct: 298 SAAKTQGGHVYMWGQCRGQSVILPHLTHLSCTDDVFACFATPAVSWRLLSVE-HEDFLTV 356
Query: 308 GGLDDEIKTKDLEGAEERDEKL 329
E K+ + E D K
Sbjct: 357 A----ESLKKEFDSPENADLKF 374
>gi|426364910|ref|XP_004049534.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
[Gorilla gorilla gorilla]
Length = 1049
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTEIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G LV S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLVGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ ++ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F + +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKR---IRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLVGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKRIRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|357133876|ref|XP_003568548.1| PREDICTED: uncharacterized protein LOC100838586 [Brachypodium
distachyon]
Length = 1090
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 133/292 (45%), Gaps = 34/292 (11%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ +G L+ WGN + G + VS + P + G V ++CG
Sbjct: 368 VACGEYHTCAVTLSGDLYTWGNGTF-NFGLLGHGNEVSHWMPKRLNGPLEGIHVSSISCG 426
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ + ++G + G LG GDR+S P+ +E+
Sbjct: 427 PWHTAVVTSAGQLF--------TFGDGSFGVLGHGDRQSLSVPREVESLKG---LRTVRA 475
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ G+LGHG + LVP V L +
Sbjct: 476 ACGVWHTAAVVEVMVGNSSTSNCSSGKIFTWGDGDKGRLGHGDKDTRLVPTCVASLVEPN 535
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ V CG T ++++G V++ G + LG N D + P + G
Sbjct: 536 F-CQVACGHCFTVALTTSGHVYTMGSSVYGQLG---------NPQADGMVPARVEGK--L 583
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F + +++CGA H ++T ++++WG+G +G LG G T D +P +V
Sbjct: 584 HKNFVE--EISCGAYHVAVLTSR-TEVYTWGKGANGRLGHGDTDDRNSPTLV 632
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 112/260 (43%), Gaps = 49/260 (18%)
Query: 48 PSPVWDFHGHTVVK-VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
P P+ +F G V+ ++CG H + GE Y SWG + G+LG G
Sbjct: 302 PKPL-EFAGRLDVQNISCGGRHATLVTKQGEVY--------SWGEESGGRLGHGVDCDVP 352
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG--ENGQLGHGT 164
+PK++E + V CG +HT +T L +T+G G G LGHG
Sbjct: 353 QPKLVEALAH---MNIELVACGEYHTCAVT--------LSGDLYTWGNGTFNFGLLGHGN 401
Query: 165 TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRN 222
S +P+++ + +++ S+ CG +HT+VV+SAG ++++G LG SL+
Sbjct: 402 EVSHWMPKRLNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGSFGVLGHGDRQSLSVP 461
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGR 271
+++ + V+ ACG HT V + K+++WG
Sbjct: 462 REVESLKGLRT-------------VRAACGVWHTAAVVEVMVGNSSTSNCSSGKIFTWGD 508
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G P V
Sbjct: 509 GDKGRLGHGDKDTRLVPTCV 528
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 102/241 (42%), Gaps = 37/241 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
+ S+ G + + +AG L+ +G +G F ++ S P V G
Sbjct: 419 HVSSISCGPWHTAVVTSAGQLFTFG---------DGSFGVLGHGDRQSLSVPREVESLKG 469
Query: 57 HTVVKVACGSEHVVALVSA----GETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE 112
V+ ACG H A+V T ++WG + G+LG GD+++RL P +
Sbjct: 470 LRTVRAACGVWHTAAVVEVMVGNSSTSNCSSGKIFTWGDGDKGRLGHGDKDTRLVPTCVA 529
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPE 172
+ + + +V CG T LT +T G GQLG+ +VP
Sbjct: 530 SLVEPN---FCQVACGHCFTVALT--------TSGHVYTMGSSVYGQLGN-PQADGMVPA 577
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
+V+ ++ + CG +H +V++S +V++WG KG N L + D SP L
Sbjct: 578 RVEGKLHKNFVEEISCGAYHVAVLTSRTEVYTWG--KGA----NGRLGHGDTDDRNSPTL 631
Query: 233 I 233
+
Sbjct: 632 V 632
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 20/150 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSPV-WDFHGHTV 59
C V G ++A+ +G ++ G SS G G P+ V H + V
Sbjct: 535 NFCQVACGHCFTVALTTSGHVYTMG------SSVYGQLGNPQADGMVPARVEGKLHKNFV 588
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+++CG+ HV L S E Y +WG NG+LG GD + R P ++E
Sbjct: 589 EEISCGAYHVAVLTSRTEVY--------TWGKGANGRLGHGDTDDRNSPTLVEALKDKQ- 639
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
V V CG TA + K + + +SMC
Sbjct: 640 --VRSVVCGINFTAAICIHKWVSGVDQSMC 667
>gi|426364912|ref|XP_004049535.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
[Gorilla gorilla gorilla]
Length = 1057
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTEIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G LV S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLVGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ ++ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F + +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKR---IRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLVGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKRIRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|397520493|ref|XP_003830351.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
[Pan paniscus]
gi|410221282|gb|JAA07860.1| hect domain and RLD 4 [Pan troglodytes]
gi|410259926|gb|JAA17929.1| hect domain and RLD 4 [Pan troglodytes]
Length = 1057
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G LV S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLVGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKR---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLVGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|332218227|ref|XP_003258260.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
[Nomascus leucogenys]
Length = 1057
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLVGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-VGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|296083663|emb|CBI23652.3| unnamed protein product [Vitis vinifera]
Length = 1062
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 132/298 (44%), Gaps = 48/298 (16%)
Query: 7 VKAGGMMSLAIDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVK 61
V G + A+ +G L+ WG N L TE VS + P V G V+
Sbjct: 321 VACGEYHTCAVSTSGDLFTWGDGTHNAGLLGHGTE-----VSHWIPKRVSGPLEGLQVLS 375
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VACG+ H S G+ +++G G LG GDRES P+ ++ S
Sbjct: 376 VACGTWHSALATSNGK--------LFTFGDGTFGVLGHGDRESVPYPREVQIL---SGLK 424
Query: 122 VYEVTCGSFHTALLTH--RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+V CG +HTA + + ++ +T+G G+ +LGHG+ ++ L+P V L
Sbjct: 425 TIKVACGVWHTAAIIEVMSQSGTNISSRKLFTWGDGDKHRLGHGSKETYLLPTCVSALID 484
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
Y + + CG T ++++G V++ G L N D P L+
Sbjct: 485 YNFH-QLACGHTMTVALTTSGHVFTMGGTAYGQLG-------NPLSDGRLPCLV------ 530
Query: 240 GPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
QD + +++CGA H ++T ++++WGRG +G LG G T D +P V
Sbjct: 531 ----QDKLVGEFVEEISCGAYHVAVLTSRS-EVFTWGRGANGRLGHGDTEDRRSPTFV 583
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 105/240 (43%), Gaps = 37/240 (15%)
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++ACG HV + GE + +WG + G+LG G RP ++E ++
Sbjct: 268 EIACGVRHVALVTRQGEVF--------TWGEESGGRLGHGIDNDFSRPHLVEFLAVNN-- 317
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V CG +HT ++ D+ W G G LGHGT S +P++V +
Sbjct: 318 -VDFVACGEYHTCAVS---TSGDLF---TWGDGTHNAGLLGHGTEVSHWIPKRVSGPLEG 370
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ ++SV CG +H+++ +S G ++++G + G+ + R ++SG
Sbjct: 371 LQVLSVACGTWHSALATSNGKLFTFG-DGTFGVLGHGD--RESVPYPREVQILSG----- 422
Query: 241 PKFQDPVQVACGAAHTVLVTD---------DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++VACG HT + + KL++WG G LG G + P V
Sbjct: 423 ---LKTIKVACGVWHTAAIIEVMSQSGTNISSRKLFTWGDGDKHRLGHGSKETYLLPTCV 479
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 31/178 (17%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
L+ WG+ D G S + P+ V + ++ACG VAL ++G +
Sbjct: 454 LFTWGDG---DKHRLGHGSKETYLLPTCVSALIDYNFHQLACGHTMTVALTTSGHVF--- 507
Query: 83 DLVCYSWGANNNGQLGLGDRESRL----RPKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
+ G GQLG + RL + K++ F V E++CG++H A+LT R
Sbjct: 508 -----TMGGTAYGQLGNPLSDGRLPCLVQDKLVGEF-------VEEISCGAYHVAVLTSR 555
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
S +T+G G NG+LGHG T+ P V+ L + S+ CG T+ +
Sbjct: 556 --------SEVFTWGRGANGRLGHGDTEDRRSPTFVEALKDR-NVKSISCGSNFTASI 604
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 10 GGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD-FHGHTVVKVACGSEH 68
G M++A+ +G ++ G + + G L P V D G V +++CG+ H
Sbjct: 493 GHTMTVALTTSGHVFTMGGT----AYGQLGNPLSDGRLPCLVQDKLVGEFVEEISCGAYH 548
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
V L S E + +WG NG+LG GD E R P +E + V ++CG
Sbjct: 549 VAVLTSRSEVF--------TWGRGANGRLGHGDTEDRRSPTFVEALKDRN---VKSISCG 597
Query: 129 SFHTALLTHRKRPNDMLESMC 149
S TA + K + +S+C
Sbjct: 598 SNFTASICIHKWVSGADQSVC 618
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 171 PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP 230
P+ ++ L + CG+ H ++V+ G+V++WG E G L D P
Sbjct: 254 PDDIESLGDVYVWGEIACGVRHVALVTRQGEVFTWGEESG------GRLGHGIDNDFSRP 307
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTGKTIDFFAP 288
L+ + F VACG HT V+ G L++WG G +G+LG G + + P
Sbjct: 308 HLVEFLAVNNVDF-----VACGEYHTCAVSTSG-DLFTWGDGTHNAGLLGHGTEVSHWIP 361
Query: 289 AIVLWP 294
V P
Sbjct: 362 KRVSGP 367
>gi|114630758|ref|XP_001167783.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 9
[Pan troglodytes]
gi|410295450|gb|JAA26325.1| hect domain and RLD 4 [Pan troglodytes]
gi|410333083|gb|JAA35488.1| hect domain and RLD 4 [Pan troglodytes]
Length = 1049
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G LV S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLVGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKR---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLVGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|91204161|emb|CAJ71814.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 411
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 121/288 (42%), Gaps = 49/288 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNC---PLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ + S+ AG +LA+ + G +W WGN L D + E + TP V
Sbjct: 85 LEDVVSIAAGWEHNLAVKSDGTVWAWGNNRFGQLGDGTNE------NRNTPVKVKTI--K 136
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V ++ G H +AL S G + WG N QLG G + +P ++ N
Sbjct: 137 DVTEIDAGFYHSIALQSDG--------TVWVWGNNELDQLGDGTKSDAYKPMQVQGLNN- 187
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V V+ G+ H +L + W +G GQLG GT + +P V +
Sbjct: 188 ----VVAVSGGNHHNLVLK--------ADGTIWGWGANGYGQLGDGTMTESSIPTPVYDF 235
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
V++ S G + V + G +W WGM G N + T ++ PI I+G
Sbjct: 236 NGAVFIAS---GNNYNVAVKADGSIWGWGMNT-YGQLGNGTQTNSKI-----PIRING-- 284
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ V +A G H +++ DG L S G R+G LGTG T ++
Sbjct: 285 -----LNNSVSIATGGYHALILQQDGTVL-SMGYNRTGQLGTGATSNY 326
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 117/292 (40%), Gaps = 51/292 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNC---PLPDSSTE-GGFSLVSSFTPSPVWDFHG 56
+ + + GG SL + G +W WG L D +T F++
Sbjct: 35 FAAVPQISGGGSHSLVLKPDGTVWAWGGNHAGQLGDGTTNPRKFAIQVKGLED------- 87
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
VV +A G EH +A+ S G ++WG N GQLG G E+R P ++T
Sbjct: 88 --VVSIAAGWEHNLAVKSDG--------TVWAWGNNRFGQLGDGTNENRNTPVKVKTIKD 137
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V E+ G +H+ L + W +G E QLG GT A P QV+
Sbjct: 138 -----VTEIDAGFYHSIALQS--------DGTVWVWGNNELDQLGDGTKSDAYKPMQVQG 184
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L +V+V G H V+ + G +W WG G G + ++T + +P+
Sbjct: 185 LNN---VVAVSGGNHHNLVLKADGTIWGWG-ANGYGQLGDGTMTESS---IPTPVY---- 233
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
F V +A G + V V DG +W WG G LG G + P
Sbjct: 234 -----DFNGAVFIASGNNYNVAVKADG-SIWGWGMNTYGQLGNGTQTNSKIP 279
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 124/289 (42%), Gaps = 51/289 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + + AG S+A+ + G +W+WGN L D +G S ++ P V + VV
Sbjct: 135 IKDVTEIDAGFYHSIALQSDGTVWVWGNNEL-DQLGDGTKS--DAYKPMQVQGLN--NVV 189
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V+ G+ H + L + G + WGAN GQLG G P + FN
Sbjct: 190 AVSGGNHHNLVLKADG--------TIWGWGANGYGQLGDGTMTESSIPTPVYDFNG---- 237
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
AV+ + +++ A+ + W +G+ GQLG+GT ++ +P ++ L
Sbjct: 238 AVFIASGNNYNVAV---------KADGSIWGWGMNTYGQLGNGTQTNSKIPIRINGLNNS 288
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGN 236
V S+ G +H ++ G V S G + G G N T +
Sbjct: 289 V---SIATGGYHALILQQDGTVLSMGYNRTGQLGTGATSNYQYTTLKV------------ 333
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
HG D V +A G H++ + DG +W+WG G LG G T+++
Sbjct: 334 --HG--LSDVVSIAAGYYHSLALKKDG-TIWAWGNNEYGQLGDG-TLNY 376
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 84/212 (39%), Gaps = 36/212 (16%)
Query: 83 DLVCYSWGANNNGQLGLGDRESR---LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRK 139
D ++WG N+ GQLG G R ++ K +E V + G H +
Sbjct: 54 DGTVWAWGGNHAGQLGDGTTNPRKFAIQVKGLED--------VVSIAAGWEHNLAVKS-- 103
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
+ W +G GQLG GT ++ P +VK + + +D G +H+ + S
Sbjct: 104 ------DGTVWAWGNNRFGQLGDGTNENRNTPVKVKTIKD---VTEIDAGFYHSIALQSD 154
Query: 200 GDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLV 259
G VW WG + L DA P+ + G + V V+ G H +++
Sbjct: 155 GTVWVWGNNE------LDQLGDGTKSDAYKPMQVQG-------LNNVVAVSGGNHHNLVL 201
Query: 260 TDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
DG +W WG G LG G + P V
Sbjct: 202 KADG-TIWGWGANGYGQLGDGTMTESSIPTPV 232
>gi|28874834|emb|CAC84086.1| ZR1 protein [Medicago sativa]
Length = 1035
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 128/293 (43%), Gaps = 39/293 (13%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFS---LVSSFTPSPVWDFHGHTVVKVA 63
V G + A+ ++G ++ WG D EG L F+ PV G ++ +A
Sbjct: 361 VACGEYHTCALTDSGDVYTWGKDSCSDLVDEGRIRSQWLTHKFSL-PV---EGISISSIA 416
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H + S G + ++G G LG G+ S PK +E+ V
Sbjct: 417 CGEWHTAIVSSCGRLF--------TYGDGTFGVLGHGNYHSFSSPKEVESLK---GLCVR 465
Query: 124 EVTCGSFHTALL----THRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V CG++HTA + R + N + +T+G + G+LGH + LVP V +L
Sbjct: 466 SVACGTWHTAAIIEVSAERFKYNTSTGKL-FTWGDADEGRLGHADNVNKLVPTCVSQLVD 524
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
Y + V V CG T +++ G V++ G K L D +
Sbjct: 525 YDF-VQVSCGRMMTLALTNMGKVFAMGSAK------YGQLGNPHVKDRAVVV-------E 570
Query: 240 GPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G Q+ V+ ++CG+ H ++T G +++WG+G +G LG G T + + P V
Sbjct: 571 GMLKQEYVKMISCGSYHVAVLTSSG-SVYTWGKGENGELGLGDTENRYTPCFV 622
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 39/224 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHGH 57
I S+ G + + + G L+ +G +G F ++ S +P V G
Sbjct: 412 ISSIACGEWHTAIVSSCGRLFTYG---------DGTFGVLGHGNYHSFSSPKEVESLKGL 462
Query: 58 TVVKVACGSEHVVALVS-AGETYKGEDLV--CYSWGANNNGQLGLGDRESRLRPKIIETF 114
V VACG+ H A++ + E +K ++WG + G+LG D ++L P +
Sbjct: 463 CVRSVACGTWHTAAIIEVSAERFKYNTSTGKLFTWGDADEGRLGHADNVNKLVPTCV--- 519
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG--HGTTQSALVPE 172
+Q + +V+CG T LT+ + + G + GQLG H ++ +V
Sbjct: 520 SQLVDYDFVQVSCGRMMTLALTNMGK--------VFAMGSAKYGQLGNPHVKDRAVVVEG 571
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG 212
+K+ +YV ++S CG +H +V++S+G V++WG E GLG
Sbjct: 572 MLKQ--EYVKMIS--CGSYHVAVLTSSGSVYTWGKGENGELGLG 611
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
V G MM+LA+ N G ++ G+ L + + +V V ++
Sbjct: 530 VSCGRMMTLALTNMGKVFAMGSAKYGQLGNPHVKDRAVVVEGM-------LKQEYVKMIS 582
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CGS HV L S+G Y +WG NG+LGLGD E+R P +E V
Sbjct: 583 CGSYHVAVLTSSGSVY--------TWGKGENGELGLGDTENRYTPCFVEALRDRQ---VD 631
Query: 124 EVTCG-SFHTALLTHR 138
+TCG SF A+ H+
Sbjct: 632 TITCGPSFTVAICLHK 647
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 23/159 (14%)
Query: 19 NAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGET 78
+ G L+ WG+ D G V+ P+ V + V+V+CG +AL + G+
Sbjct: 490 STGKLFTWGD---ADEGRLGHADNVNKLVPTCVSQLVDYDFVQVSCGRMMTLALTNMGKV 546
Query: 79 YKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
+ + G+ GQLG + + R ++E + V ++CGS+H A+LT
Sbjct: 547 F--------AMGSAKYGQLG--NPHVKDRAVVVEGMLKQE--YVKMISCGSYHVAVLTS- 593
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+T+G GENG+LG G T++ P V+ L
Sbjct: 594 -------SGSVYTWGKGENGELGLGDTENRYTPCFVEAL 625
>gi|357137054|ref|XP_003570116.1| PREDICTED: uncharacterized protein LOC100825305 isoform 1
[Brachypodium distachyon]
Length = 1005
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 52/306 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL--------VSSFTPSPVW 52
+ + ++ G + A+ +G L+ WG EG SL S + P ++
Sbjct: 319 FTHVKAIAFGAKHTCALAISGELFEWG---------EGTHSLGVWDDQCQRSQWYPHKLF 369
Query: 53 -DFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
G +VVK+ACG H + S+G+ + ++G G LG GD S RPK +
Sbjct: 370 GPLEGVSVVKMACGQWHTAIISSSGQLF--------TYGDGTFGVLGHGDTSSVARPKEV 421
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLTH------RKRPNDMLESMCWTFGLGENGQLGHGTT 165
E+ V V CG +HTA + P+ L +T+G + G+LGH
Sbjct: 422 ESLK---GLRVKAVACGPWHTAAIVEILGTVKSNAPSGKL----FTWGDADRGKLGHSDK 474
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
+S LVP VK L + V C T ++ G V++ G ++ + L +
Sbjct: 475 ESKLVPTCVKALTDSDF-AQVSCAKALTVALTITGVVFTIGSKE------HGQLGSHRLD 527
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
D+ + S GP +F +++ G++H ++T +G K+++WG+G G LG G +D
Sbjct: 528 DSS---ICSVEGPLKTEFVR--EISSGSSHVAVLTMNG-KVFTWGKGTEGQLGLGNYVDR 581
Query: 286 FAPAIV 291
+P +V
Sbjct: 582 SSPTLV 587
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +++ GS HV L G+ + +WG GQLGLG+ R P ++E
Sbjct: 543 VREISSGSSHVAVLTMNGKVF--------TWGKGTEGQLGLGNYVDRSSPTLVEALEDKQ 594
Query: 119 PWAVYEVTCGS-FHTALLTHR 138
V + CGS F A+ HR
Sbjct: 595 ---VDSIACGSNFTVAVCLHR 612
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 45/157 (28%)
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASL------------------- 219
Q + + +V CG H ++V+ G+V+SWG E G L S+
Sbjct: 266 QILDVQNVSCGEKHAAIVTKQGEVFSWGKEDGGRLGHKVSVGVLHPKIIESLAFTHVKAI 325
Query: 220 ---TRNEAGDAISPILIS-GNGPHGPKFQDP---------------------VQVACGAA 254
++ AIS L G G H D V++ACG
Sbjct: 326 AFGAKHTCALAISGELFEWGEGTHSLGVWDDQCQRSQWYPHKLFGPLEGVSVVKMACGQW 385
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT +++ G +L+++G G GVLG G T P V
Sbjct: 386 HTAIISSSG-QLFTYGDGTFGVLGHGDTSSVARPKEV 421
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 83/238 (34%), Gaps = 77/238 (32%)
Query: 17 IDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHGHTVVKVACGSEHVV 70
I ++G L+ +G+ G F ++ S P V G V VACG H
Sbjct: 390 ISSSGQLFTYGD---------GTFGVLGHGDTSSVARPKEVESLKGLRVKAVACGPWHTA 440
Query: 71 ALVSAGETYKGEDLV--CYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA------- 121
A+V T K ++WG + G+LG D+ES+L P ++ DS +A
Sbjct: 441 AIVEILGTVKSNAPSGKLFTWGDADRGKLGHSDKESKLVPTCVKALT-DSDFAQVSCAKA 499
Query: 122 -------------------------------------------VYEVTCGSFHTALLTHR 138
V E++ GS H A+LT
Sbjct: 500 LTVALTITGVVFTIGSKEHGQLGSHRLDDSSICSVEGPLKTEFVREISSGSSHVAVLT-- 557
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
+ +T+G G GQLG G P V+ L + S+ CG T V
Sbjct: 558 ------MNGKVFTWGKGTEGQLGLGNYVDRSSPTLVEALEDK-QVDSIACGSNFTVAV 608
>gi|357137056|ref|XP_003570117.1| PREDICTED: uncharacterized protein LOC100825305 isoform 2
[Brachypodium distachyon]
Length = 940
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 52/306 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL--------VSSFTPSPVW 52
+ + ++ G + A+ +G L+ WG EG SL S + P ++
Sbjct: 254 FTHVKAIAFGAKHTCALAISGELFEWG---------EGTHSLGVWDDQCQRSQWYPHKLF 304
Query: 53 -DFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
G +VVK+ACG H + S+G+ + ++G G LG GD S RPK +
Sbjct: 305 GPLEGVSVVKMACGQWHTAIISSSGQLF--------TYGDGTFGVLGHGDTSSVARPKEV 356
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLTH------RKRPNDMLESMCWTFGLGENGQLGHGTT 165
E+ V V CG +HTA + P+ L +T+G + G+LGH
Sbjct: 357 ESLK---GLRVKAVACGPWHTAAIVEILGTVKSNAPSGKL----FTWGDADRGKLGHSDK 409
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
+S LVP VK L + V C T ++ G V++ G ++ + L +
Sbjct: 410 ESKLVPTCVKALTDSDF-AQVSCAKALTVALTITGVVFTIGSKE------HGQLGSHRLD 462
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
D+ + S GP +F +++ G++H ++T +G K+++WG+G G LG G +D
Sbjct: 463 DSS---ICSVEGPLKTEFVR--EISSGSSHVAVLTMNG-KVFTWGKGTEGQLGLGNYVDR 516
Query: 286 FAPAIV 291
+P +V
Sbjct: 517 SSPTLV 522
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +++ GS HV L G+ + +WG GQLGLG+ R P ++E
Sbjct: 478 VREISSGSSHVAVLTMNGKVF--------TWGKGTEGQLGLGNYVDRSSPTLVEALEDKQ 529
Query: 119 PWAVYEVTCGS-FHTALLTHR 138
V + CGS F A+ HR
Sbjct: 530 ---VDSIACGSNFTVAVCLHR 547
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 45/157 (28%)
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASL------------------- 219
Q + + +V CG H ++V+ G+V+SWG E G L S+
Sbjct: 201 QILDVQNVSCGEKHAAIVTKQGEVFSWGKEDGGRLGHKVSVGVLHPKIIESLAFTHVKAI 260
Query: 220 ---TRNEAGDAISPILIS-GNGPHGPKFQDP---------------------VQVACGAA 254
++ AIS L G G H D V++ACG
Sbjct: 261 AFGAKHTCALAISGELFEWGEGTHSLGVWDDQCQRSQWYPHKLFGPLEGVSVVKMACGQW 320
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT +++ G +L+++G G GVLG G T P V
Sbjct: 321 HTAIISSSG-QLFTYGDGTFGVLGHGDTSSVARPKEV 356
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 83/238 (34%), Gaps = 77/238 (32%)
Query: 17 IDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHGHTVVKVACGSEHVV 70
I ++G L+ +G+ G F ++ S P V G V VACG H
Sbjct: 325 ISSSGQLFTYGD---------GTFGVLGHGDTSSVARPKEVESLKGLRVKAVACGPWHTA 375
Query: 71 ALVSAGETYKGEDLV--CYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA------- 121
A+V T K ++WG + G+LG D+ES+L P ++ DS +A
Sbjct: 376 AIVEILGTVKSNAPSGKLFTWGDADRGKLGHSDKESKLVPTCVKALT-DSDFAQVSCAKA 434
Query: 122 -------------------------------------------VYEVTCGSFHTALLTHR 138
V E++ GS H A+LT
Sbjct: 435 LTVALTITGVVFTIGSKEHGQLGSHRLDDSSICSVEGPLKTEFVREISSGSSHVAVLT-- 492
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
+ +T+G G GQLG G P V+ L + S+ CG T V
Sbjct: 493 ------MNGKVFTWGKGTEGQLGLGNYVDRSSPTLVEALEDK-QVDSIACGSNFTVAV 543
>gi|332218225|ref|XP_003258259.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
[Nomascus leucogenys]
Length = 1049
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLVGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G L+ S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLLGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-VGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLLGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|37620181|ref|NP_056416.2| probable E3 ubiquitin-protein ligase HERC4 isoform b [Homo sapiens]
gi|24659293|gb|AAH39600.1| Hect domain and RLD 4 [Homo sapiens]
gi|119574646|gb|EAW54261.1| hect domain and RLD 4, isoform CRA_b [Homo sapiens]
gi|119574648|gb|EAW54263.1| hect domain and RLD 4, isoform CRA_b [Homo sapiens]
gi|325463745|gb|ADZ15643.1| hect domain and RLD 4 [synthetic construct]
Length = 1049
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTEIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G LV S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLVGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ ++ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKR---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLVGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|24659266|gb|AAH38960.1| HERC3 protein [Homo sapiens]
Length = 368
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 141/303 (46%), Gaps = 60/303 (19%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L+++ P + + T
Sbjct: 85 HIIHVACGESHSLALSDRGQLFSWG------AGSDGQLGLMTTEDSVAVPRLIQKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG S+ P+ + + +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGKNSHGQLGLGKEFPSQASPQRVRSL-EG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G+ GQLG L E+ +E
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGMNNAGQLG-------LSDEKDRES 232
Query: 178 PQYVYL------VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP- 230
P +V L V + CG HT+V++ +G V+++G G C L + D ++P
Sbjct: 233 PCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPR 286
Query: 231 --ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ + G+ + Q+ACG HT+ ++++G G G LGTG T + P
Sbjct: 287 RVLELMGS--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCP 338
Query: 289 AIV 291
+ V
Sbjct: 339 SPV 341
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 107/241 (44%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +VACG H V L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 35 SVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLGH-EREGNKPEQIGALADQH 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ R + +++G G +GQLG TT+ S VP +++
Sbjct: 86 ----IIHVACGESHSLALSDRGQ--------LFSWGAGSDGQLGLMTTEDSVAVPRLIQK 133
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDAISP 230
L Q L V CG +H +++ G ++WG + GLG AS R + + I P
Sbjct: 134 LNQQTIL-QVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGI-P 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WG +G LG D +P
Sbjct: 192 L---------------AQVAAGGAHSFALSLSG-AVFGWGMNNAGQLGLSDEKDRESPCH 235
Query: 291 V 291
V
Sbjct: 236 V 236
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +GA++ WG + ++ G +P V VV ++
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWG---MNNAGQLGLSDEKDRESPCHVKLLRTQKVVYIS 248
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWAV 122
CG EH L +G + ++GA + GQLG + P+ ++E + V
Sbjct: 249 CGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE----V 296
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 TQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 342
>gi|403355850|gb|EJY77515.1| RCC1 and BTB domain-containing protein, putative [Oxytricha
trifallax]
Length = 546
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 128/296 (43%), Gaps = 69/296 (23%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
+P V V V C H + + +++ YS G N+ GQLGLG+ + +
Sbjct: 108 SPKQVEALSRKFVTAVGCSYYHTIFSCA-------DEMEIYSCGRNDYGQLGLGNLDDKN 160
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-HGTT 165
P +IE N + + CG +H+ + + ++ ++FG ++GQLG G+
Sbjct: 161 SPTLIEALNGKR---IVSIGCGQYHSVVSS--------IDGEIFSFGRNDSGQLGITGSD 209
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTR 221
+ +P++VK L + CG +HT +++ G ++SWG + G+G+
Sbjct: 210 GNISLPKEVKNLKS----TQIACGYYHTVAINN-GQLYSWGKNDSGQLGIGI-------- 256
Query: 222 NEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+ I P L+ + Q+ V VACG HT+ + G +L+S+GR G LG G
Sbjct: 257 -YSAKEILPTLV-----RDLEDQEIVSVACGCYHTLALGYAG-QLFSFGRNSHGQLGDGT 309
Query: 282 TIDFFAPAI-------------------------VLWPPLTEEFKQDELNTGGLDD 312
T + P + V+ PL E+FKQ LN L D
Sbjct: 310 TNNSCKPLLIQGLIDKKVCQIAAGFYHSIVLANPVIRNPLVEDFKQ-LLNNQELSD 364
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 103/231 (44%), Gaps = 38/231 (16%)
Query: 58 TVVKVACGSEHVVALVSAGETYKG---EDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
V++VA G+EH + L G+ Y G E S G N Q + + K++E
Sbjct: 2 NVIQVAAGNEHTLILTDCGDVYSGGYNEMGNSLSQGPNAMSQNNNNNNTRTGQLKLVEKL 61
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
+ ++ + G H LT+ + ++FG GQLGHG S P+QV
Sbjct: 62 RGKNIVKIF-ASNGCEHVIALTNNGKV--------FSFGFNVKGQLGHGDQTSINSPKQV 112
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAG--DVWSWGM----EKGLGLCPNASLTRNEAGDAI 228
+ L + ++ +V C +HT + S A +++S G + GLG D
Sbjct: 113 EALSRK-FVTAVGCSYYHT-IFSCADEMEIYSCGRNDYGQLGLG----------NLDDKN 160
Query: 229 SPILISG-NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
SP LI NG V + CG H+V+ + DG +++S+GR SG LG
Sbjct: 161 SPTLIEALNGKR------IVSIGCGQYHSVVSSIDG-EIFSFGRNDSGQLG 204
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS--FTPSPVWDFHGHTVVKVAC 64
+ G ++AI+N G L+ WG + S + G + S+ P+ V D +V VAC
Sbjct: 226 IACGYYHTVAINN-GQLYSWG----KNDSGQLGIGIYSAKEILPTLVRDLEDQEIVSVAC 280
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G H +AL AG+ +S+G N++GQLG G + +P +I+ V +
Sbjct: 281 GCYHTLALGYAGQL--------FSFGRNSHGQLGDGTTNNSCKPLLIQGL---IDKKVCQ 329
Query: 125 VTCGSFHTALLTHRKRPNDMLE 146
+ G +H+ +L + N ++E
Sbjct: 330 IAAGFYHSIVLANPVIRNPLVE 351
>gi|410900470|ref|XP_003963719.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like
[Takifugu rubripes]
Length = 1042
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 135/300 (45%), Gaps = 50/300 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF-----TPSPVWDFHGHT 58
I +V G +LA+++ G ++ WG ++G L ++F P +
Sbjct: 86 IVAVSGGESHTLALNDKGQIFSWG------LGSDGQLGL-NNFEECVRVPRNIKCLSDVQ 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQD 117
+ +VACG H AL G+ + SWG N GQLGLG S + P+II++ Q
Sbjct: 139 IAQVACGYRHSHALSKGGQVF--------SWGQNQFGQLGLGMHGSSISTPQIIQSL-QG 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P+A +++ G H+ +T L + +G + GQLG T P +K L
Sbjct: 190 IPFA--QLSAGGAHSFAIT--------LSGAVFGWGRNKFGQLGLNDTNDRWFPALLKSL 239
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ ++ V CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 -RSQRVIYVSCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTNHEINPRKVFELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
GN Q++CG HT+ T K++S+G G +G LGT T + +PA V P
Sbjct: 293 GN--------IVTQISCGRQHTLAFTPSSGKMYSFGLGGNGQLGTRSTCNRKSPAPVKGP 344
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 110/244 (45%), Gaps = 44/244 (18%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
FHG V V CG +H V L+ G Y+ G N+ GQ LG + R +P+ +
Sbjct: 31 FHGKKVCDVGCGLKHTVFLLDDG--------TVYTCGCNDLGQ--LGHEKPRKKPEHVVA 80
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL-VPE 172
+ + V+ G HT L ND + W GLG +GQLG + + VP
Sbjct: 81 LDAQ---IIVAVSGGESHTLAL------NDKGQIFSW--GLGSDGQLGLNNFEECVRVPR 129
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAI 228
+K L V + V CG H+ +S G V+SWG + GLG+ G +I
Sbjct: 130 NIKCLSD-VQIAQVACGYRHSHALSKGGQVFSWGQNQFGQLGLGM----------HGSSI 178
Query: 229 S-PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
S P +I G F Q++ G AH+ +T G ++ WGR + G LG T D +
Sbjct: 179 STPQII--QSLQGIPF---AQLSAGGAHSFAITLSG-AVFGWGRNKFGQLGLNDTNDRWF 232
Query: 288 PAIV 291
PA++
Sbjct: 233 PALL 236
>gi|449462158|ref|XP_004148808.1| PREDICTED: uncharacterized protein LOC101222741 [Cucumis sativus]
gi|449506967|ref|XP_004162897.1| PREDICTED: uncharacterized LOC101222741 [Cucumis sativus]
Length = 1120
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 132/297 (44%), Gaps = 35/297 (11%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTVV 60
S I V G + A+ G L+ WG+ ++ G S VS + P V G V
Sbjct: 333 SSIGFVACGEFHTCAVTITGELYTWGD-GTHNAGLLGHGSDVSHWIPKRVSGPLEGLQVT 391
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V CG H + S G+ +++G G LG GDRE+ PK +E+ S
Sbjct: 392 SVTCGPWHTALVTSMGQ--------LFTFGDGTFGALGHGDRENISYPKEVESL---SGL 440
Query: 121 AVYEVTCGSFHTALLTH---RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V CG +HTA + + + + +T+G G+ +LGHG + L P V L
Sbjct: 441 RTIAVACGVWHTAAVVEVIVTQSSSSISSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPAL 500
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISG 235
Y + V CG T ++++G V+S G + LG N + D P L+
Sbjct: 501 IDYDFH-KVACGHSITVGLTTSGQVFSMGSTVYGQLG---------NPSADGKIPCLVED 550
Query: 236 NGPHGPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F + V+ V+CGA H V++T ++++WG+G +G LG G D P +V
Sbjct: 551 K-----LFGESVEEVSCGAYHVVVLTSKN-EVYTWGKGANGRLGHGDVEDRKTPTLV 601
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 127/299 (42%), Gaps = 61/299 (20%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSSFT--------PSP-----VWDFHGHTVVKVAC 64
D G +++WG + D+ + G SS+ P P V D H +AC
Sbjct: 235 DALGDVYIWGEI-VGDNIVKIGAEKNSSYVTLRTDVLLPRPLESNIVLDIH-----HIAC 288
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G H + GE + +WG + G+LG G + ++P+++E+ S +
Sbjct: 289 GVRHAALVTRQGEVF--------TWGEESGGRLGHGVVKDVIQPRMVESLAASS---IGF 337
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
V CG FHT +T E W G G LGHG+ S +P++V + + +
Sbjct: 338 VACGEFHTCAVTITG------ELYTWGDGTHNAGLLGHGSDVSHWIPKRVSGPLEGLQVT 391
Query: 185 SVDCGLFHTSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
SV CG +HT++V+S G ++++ G LG +++ + +++S +
Sbjct: 392 SVTCGPWHTALVTSMGQLFTFGDGTFGALGHGDRENISYPKEVESLSGLRT--------- 442
Query: 243 FQDPVQVACGAAHT-----VLVTDDGY-----KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ VACG HT V+VT KL++WG G LG G P V
Sbjct: 443 ----IAVACGVWHTAAVVEVIVTQSSSSISSGKLFTWGDGDKNRLGHGDKEPRLKPTCV 497
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 37/183 (20%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-----WDFHGHTVVKVACGSEHVVALVSA 75
G L+ WG+ D + G P+ V +DFH KVACG V L ++
Sbjct: 470 GKLFTWGD---GDKNRLGHGDKEPRLKPTCVPALIDYDFH-----KVACGHSITVGLTTS 521
Query: 76 GETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET--FNQDSPWAVYEVTCGSFHTA 133
G+ + S G+ GQLG + ++ P ++E F + +V EV+CG++H
Sbjct: 522 GQVF--------SMGSTVYGQLGNPSADGKI-PCLVEDKLFGE----SVEEVSCGAYHVV 568
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
+LT + +T+G G NG+LGHG + P V+ L ++ + CG +T
Sbjct: 569 VLTSKNE--------VYTWGKGANGRLGHGDVEDRKTPTLVEALKDR-HVKYIACGSNYT 619
Query: 194 SVV 196
+ +
Sbjct: 620 AAI 622
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G +V +V+CG+ HVV L S E Y +WG NG+LG GD E R P ++E
Sbjct: 554 GESVEEVSCGAYHVVVLTSKNEVY--------TWGKGANGRLGHGDVEDRKTPTLVEALK 605
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
V + CGS +TA + K + +S C
Sbjct: 606 DRH---VKYIACGSNYTAAICLHKWVSSAEQSQC 636
>gi|326914182|ref|XP_003203406.1| PREDICTED: RCC1 and BTB domain-containing protein 1-like [Meleagris
gallopavo]
Length = 537
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 109/250 (43%), Gaps = 31/250 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + G + ++ GS HV+ GE Y +WG N QLG G
Sbjct: 67 STIVPKKLEALCGKKISSLSYGSGPHVLLCTEDGEVY--------AWGHNGYSQLGNGAT 118
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
+ P ++ V EV CGS H+ L+ + + +G GQ+G
Sbjct: 119 NQGVTP--VQVCTNLLLKKVIEVACGSHHSMALS--------FDGDLYAWGYNNCGQVGS 168
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + P +V Q +V + CG + V + G+V+ WG N L
Sbjct: 169 GSTANQPTPRRVSNCLQDKMVVGIACGQTSSMAVVNNGEVYGWGYNG------NGQLGLG 222
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
G+ ++P ++ HG +Q+ACG AHT+ +TD+G L++WG G LGTG
Sbjct: 223 NNGNQLTPCRVA--ALHGVCI---LQIACGYAHTLALTDEGL-LYAWGANTYGQLGTGNK 276
Query: 283 IDFFAPAIVL 292
+ +P ++
Sbjct: 277 SNQLSPLQIM 286
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 119/281 (42%), Gaps = 46/281 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H +AL G+ Y +WG NN GQ+G G ++ P+ + QD
Sbjct: 136 VIEVACGSHHSMALSFDGDLY--------AWGYNNCGQVGSGSTANQPTPRRVSNCLQDK 187
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + + + +G NGQLG G + L P +V L
Sbjct: 188 --MVVGIACGQTSSMAVVNNGEV--------YGWGYNGNGQLGLGNNGNQLTPCRVAAL- 236
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
V ++ + CG HT ++ G +++WG L + +SP+ I
Sbjct: 237 HGVCILQIACGYAHTLALTDEGLLYAWGANT------YGQLGTGNKSNQLSPLQIM---- 286
Query: 239 HGPKFQDPVQVA-CGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAP 288
+ + V++A C +AHT +++ WG RG+S VL T FA
Sbjct: 287 --MEKERVVEIAACHSAHTSAAKTQSGQVYMWGQCRGQSVVLPHLTHFACTDDVFACFAT 344
Query: 289 AIVLWPPLTEEFKQDELNTGGLDDEIKTKDLEGAEERDEKL 329
V+W L+ E ++D L E K+ + E D K
Sbjct: 345 PAVMWRLLSVE-QEDFLTVA----ESLKKEFDSPETSDLKF 380
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G +QS +VP++++ L + + +S G H + + G+V++WG
Sbjct: 50 FVFGLNCSNCLGTGDSQSTIVPKKLEALCGKKISSLSYGSGP-HVLLCTEDGEVYAWGHN 108
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L ++P+ + N + ++VACG+ H++ ++ DG L++
Sbjct: 109 G------YSQLGNGATNQGVTPVQVCTN----LLLKKVIEVACGSHHSMALSFDG-DLYA 157
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 158 WGYNNCGQVGSGSTANQPTP 177
>gi|118084892|ref|XP_417063.2| PREDICTED: RCC1 and BTB domain-containing protein 1 [Gallus gallus]
Length = 537
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 109/250 (43%), Gaps = 31/250 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + G + ++ GS HV+ GE Y +WG N QLG G
Sbjct: 67 STIVPKKLEALCGKKISSLSYGSGPHVLLCTEDGEVY--------AWGHNGYSQLGNGAT 118
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
+ P ++ V EV CGS H+ L+ + + +G GQ+G
Sbjct: 119 NQGVTP--VQVCTNLLLKKVIEVACGSHHSMALS--------FDGDLYAWGYNNCGQVGS 168
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + P +V Q +V + CG + V + G+V+ WG N L
Sbjct: 169 GSTANQPTPRRVSNCLQDKMVVGIACGQTSSMAVVNNGEVYGWGYNG------NGQLGLG 222
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
G+ ++P ++ HG +Q+ACG AHT+ +TD+G L++WG G LGTG
Sbjct: 223 NNGNQLTPCRVA--ALHGVCI---LQIACGYAHTLALTDEGL-LYAWGANTYGQLGTGNK 276
Query: 283 IDFFAPAIVL 292
+ +P ++
Sbjct: 277 SNQLSPLQIM 286
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 115/280 (41%), Gaps = 44/280 (15%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++VACGS H +AL G+ Y +WG NN GQ+G G ++ P+ + QD
Sbjct: 136 VIEVACGSHHSMALSFDGDLY--------AWGYNNCGQVGSGSTANQPTPRRVSNCLQDK 187
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG + + + + +G NGQLG G + L P +V L
Sbjct: 188 --MVVGIACGQTSSMAVVNNGEV--------YGWGYNGNGQLGLGNNGNQLTPCRVAAL- 236
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
V ++ + CG HT ++ G +++WG L + +SP+ I
Sbjct: 237 HGVCILQIACGYAHTLALTDEGLLYAWGANT------YGQLGTGNKSNQLSPLQIMMEKE 290
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPA 289
+ AC +AHT +++ WG RG+S VL T FA
Sbjct: 291 RVVEI-----AACHSAHTSAAKTQSGQVYMWGQCRGQSVVLPHLTHFACTDDVFACFATP 345
Query: 290 IVLWPPLTEEFKQDELNTGGLDDEIKTKDLEGAEERDEKL 329
V+W L+ E ++D L E K+ + E D K
Sbjct: 346 AVMWRLLSVE-QEDFLTVA----ESLKKEFDSPETADLKF 380
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G +QS +VP++++ L + + +S G H + + G+V++WG
Sbjct: 50 FVFGLNCSNCLGTGDSQSTIVPKKLEALCGKKISSLSYGSGP-HVLLCTEDGEVYAWGHN 108
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L ++P+ + N + ++VACG+ H++ ++ DG L++
Sbjct: 109 G------YSQLGNGATNQGVTPVQVCTN----LLLKKVIEVACGSHHSMALSFDG-DLYA 157
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 158 WGYNNCGQVGSGSTANQPTP 177
>gi|63025188|ref|NP_071362.1| probable E3 ubiquitin-protein ligase HERC4 isoform a [Homo sapiens]
gi|74707832|sp|Q5GLZ8.1|HERC4_HUMAN RecName: Full=Probable E3 ubiquitin-protein ligase HERC4; AltName:
Full=HECT domain and RCC1-like domain-containing protein
4
gi|37900475|gb|AAO65480.1| HECT and RCC1 containing protein 4 isoform 1 [Homo sapiens]
gi|119574649|gb|EAW54264.1| hect domain and RLD 4, isoform CRA_d [Homo sapiens]
Length = 1057
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTEIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G LV S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLVGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ ++ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKR---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLVGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|348683616|gb|EGZ23431.1| hypothetical protein PHYSODRAFT_258036 [Phytophthora sojae]
Length = 1271
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 126/293 (43%), Gaps = 66/293 (22%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK-- 80
+W+WG P S EGG LV P V +G +V+VACG EH++ L S G+ Y
Sbjct: 469 MWVWGRPP----SLEGGTPLV--LRPKQVSLLNGQPIVQVACGGEHLLYLTSTGDVYSYG 522
Query: 81 -GEDLVCYSWGANNNGQLGLGDRESRLRPKI-IETFNQDSPWAVYEVTCGSFHTALLTHR 138
ED + N D + ++ +E + A+ ++CG+ H+ +T
Sbjct: 523 DNEDKKAAAVTIATNANSADNDYTRSISKELALEKALHRTTIAM--ISCGAQHSLAIT-- 578
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL--------------------- 177
D E +T+G GE+G+LGHG + VP +V L
Sbjct: 579 ----DAGE--LYTWGSGEDGRLGHGDMRDRAVPRKVMSLLRESVASASCGLGDNKWRDTP 632
Query: 178 ------PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPI 231
PQ + +V CG T+ + G++++WG + G G C + + D + P
Sbjct: 633 HQIVGFPQGTRISNVVCGWNFTAALDRQGNIFTWG-KTGEGQCGLGYVDK----DQVVPR 687
Query: 232 LISGNGPHGPKFQD------PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
+ K ++ V VACG HTV++T G +L+SWG G G L
Sbjct: 688 CVE-------KLREVAAGSAAVDVACGYTHTVVLTASG-ELYSWGLGEYGQLA 732
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 120/313 (38%), Gaps = 61/313 (19%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+ I + G SLAI +AG L+ WG+ + G + P V +V
Sbjct: 562 TTIAMISCGAQHSLAITDAGELYTWGSG---EDGRLGHGDMRDRAVPRKVMSLLRESVAS 618
Query: 62 VACG------SEHVVALVSAGETYKGEDLVC--------------YSWGANNNGQLGLG- 100
+CG + +V + + ++VC ++WG GQ GLG
Sbjct: 619 ASCGLGDNKWRDTPHQIVGFPQGTRISNVVCGWNFTAALDRQGNIFTWGKTGEGQCGLGY 678
Query: 101 -DRESRLRPKIIETFNQDSP-WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENG 158
D++ ++ P+ +E + + A +V CG HT +LT +++GLGE G
Sbjct: 679 VDKD-QVVPRCVEKLREVAAGSAAVDVACGYTHTVVLT--------ASGELYSWGLGEYG 729
Query: 159 QLGHGT--TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLC 214
QL + + P+Q L V CG FH+ + +++WG+ GL
Sbjct: 730 QLARVQLPSDALCAPDQ---------LTRVYCGAFHSIATTEKRVMFAWGLNSYGACGLG 780
Query: 215 PNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRS 274
A+ + E D S Q + VACG +T+ + D
Sbjct: 781 HTANKDKPERIDCFSS-------------QTELVVACGHKYTIALEVDPALYGHSSSSSH 827
Query: 275 GVLGTGKTIDFFA 287
++ TG +D A
Sbjct: 828 AMVRTGAAVDGLA 840
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK-----GLGLCPNA 217
G T L P+QV L +V V CG H ++S GDV+S+G + + + NA
Sbjct: 480 GGTPLVLRPKQVSLLNGQP-IVQVACGGEHLLYLTSTGDVYSYGDNEDKKAAAVTIATNA 538
Query: 218 SLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
+ N+ +IS L H ++CGA H++ +TD G +L++WG G G L
Sbjct: 539 NSADNDYTRSISKELALEKALHRTTI---AMISCGAQHSLAITDAG-ELYTWGSGEDGRL 594
Query: 278 GTGKTIDFFAPAIVL 292
G G D P V+
Sbjct: 595 GHGDMRDRAVPRKVM 609
>gi|224495959|ref|NP_001139096.1| probable E3 ubiquitin-protein ligase HERC3 [Danio rerio]
Length = 1046
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 107/239 (44%), Gaps = 33/239 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL--VSSFTPSPVWDFHGHTVV 60
+I V G +A+ G L++WG +SS + G S+ +P P+ G +
Sbjct: 138 RISQVMCGNHHCIALSKDGQLFVWGE----NSSGQLGLGKGEPSTLSPQPLKSLCGIPLT 193
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+++ G +H AL +G + WG N+ GQLGL D + R P I+
Sbjct: 194 QISAGGDHSFALSFSGAVF--------GWGKNSAGQLGLNDEQDRAVPCHIKFLRSQK-- 243
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++CG HTA LT E +TFG G GQLGH +T++ +P +V EL
Sbjct: 244 -VVYISCGEEHTAALTK--------EGGLFTFGNGSKGQLGHDSTRNEPLPRRVMEL-MG 293
Query: 181 VYLVSVDCGLFHT-SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ + CG HT + V S G ++++G L G A SP+ +S P
Sbjct: 294 TEVSQIACGRNHTLAFVPSTGLIYAFGCNT------QGQLGTGIRGSAKSPVPVSNIQP 346
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 124/282 (43%), Gaps = 40/282 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTVVK 61
+I V G SLA++ G ++ WG D G G + + P + H + +
Sbjct: 85 KISGVSCGQAHSLAVNEQGQVFAWGA---GDGGQLGLGTAEEAVRVPRLIKKLCEHRISQ 141
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE-SRLRPKIIETFNQDSPW 120
V CG+ H +AL G+ + WG N++GQLGLG E S L P+ +++
Sbjct: 142 VMCGNHHCIALSKDGQLF--------VWGENSSGQLGLGKGEPSTLSPQPLKSL---CGI 190
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKELP 178
+ +++ G H+ L+ FG G+N GQLG Q VP +K L
Sbjct: 191 PLTQISAGGDHSFALSFSGA----------VFGWGKNSAGQLGLNDEQDRAVPCHIKFL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G ++++G L ++ TRNE P+
Sbjct: 240 RSQKVVYISCGEEHTAALTKEGGLFTFGNGSKGQLGHDS--TRNE------PLPRRVMEL 291
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
G + Q+ACG HT+ ++++G G LGTG
Sbjct: 292 MGTEVS---QIACGRNHTLAFVPSTGLIYAFGCNTQGQLGTG 330
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 114/291 (39%), Gaps = 74/291 (25%)
Query: 39 GFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVC------------ 86
G S S F P F G + +VACG++H + L+ G Y C
Sbjct: 16 GASEASVFEPRSCCVFDGRGLKEVACGNQHSLFLLHDGSVYTCGSNSCGQLGHDKGGSRP 75
Query: 87 ------------------------------YSWGANNNGQLGLGDRESRLR-PKIIETFN 115
++WGA + GQLGLG E +R P++I+
Sbjct: 76 ELVGALDAQKISGVSCGQAHSLAVNEQGQVFAWGAGDGGQLGLGTAEEAVRVPRLIKKLC 135
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQV 174
+ + +V CG+ H L+ + + +G +GQLG G + S L P+ +
Sbjct: 136 EHR---ISQVMCGNHHCIALSK--------DGQLFVWGENSSGQLGLGKGEPSTLSPQPL 184
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS 234
K L + L + G H+ +S +G V+ WG L N+ D P I
Sbjct: 185 KSLCG-IPLTQISAGGDHSFALSFSGAVFGWGKNSA------GQLGLNDEQDRAVPCHI- 236
Query: 235 GNGPHGPKF---QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
KF Q V ++CG HT +T +G L+++G G G LG T
Sbjct: 237 -------KFLRSQKVVYISCGEEHTAALTKEG-GLFTFGNGSKGQLGHDST 279
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 85/195 (43%), Gaps = 28/195 (14%)
Query: 89 WGANNNGQLGLGDRE-SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLES 147
WG++ GQLG+G E S P+ F+ + EV CG+ H+ L H +
Sbjct: 5 WGSSGAGQLGIGASEASVFEPRSCCVFDGR---GLKEVACGNQHSLFLLH--------DG 53
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM 207
+T G GQLGH S PE V L + V CG H+ V+ G V++WG
Sbjct: 54 SVYTCGSNSCGQLGHDKGGSR--PELVGALDAQ-KISGVSCGQAHSLAVNEQGQVFAWGA 110
Query: 208 EKGLGLCPNASLTRNEAGDAIS-PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
G L A +A+ P LI H QV CG H + ++ DG +L
Sbjct: 111 GDG------GQLGLGTAEEAVRVPRLIKKLCEHRIS-----QVMCGNHHCIALSKDG-QL 158
Query: 267 WSWGRGRSGVLGTGK 281
+ WG SG LG GK
Sbjct: 159 FVWGENSSGQLGLGK 173
>gi|52353612|gb|AAU44178.1| ptative chromosome condensation factor [Oryza sativa Japonica
Group]
Length = 917
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 123/290 (42%), Gaps = 44/290 (15%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSS------FTPSPVWDFHGHTVVKVACGSEHVVA 71
D+ G +++WG +S G +++ S P P+ V V CG H
Sbjct: 32 DSLGDVYVWGEVFCENSVRVGSDTIIRSTEKTDFLLPKPLESRLVLDVYHVDCGVRHAAL 91
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
+ G+ + +WG ++ G+LG G RE + P+++E+ + V V CG FH
Sbjct: 92 VTRNGDVF--------TWGEDSGGRLGHGTREDSVHPRLVESL---AACNVDFVACGEFH 140
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF 191
T +T E W G G LGHGT +P+++ + + V CG +
Sbjct: 141 TCAVT------TTGELYTWGDGTHNVGLLGHGTDAGHWIPKRISGALDGLPVAYVSCGTW 194
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
HT++++S G ++++G + G+ + +LT + +SG + VAC
Sbjct: 195 HTALITSMGQLFTFG-DGSFGVLGHGNLTSISCPKEVES--LSG--------LKTIAVAC 243
Query: 252 GAAHT-----VLVTDDGY-----KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G HT V+VT KL++WG G LG G P V
Sbjct: 244 GVWHTAAIVEVIVTHSSSSVSAGKLFTWGDGDKHRLGHGDKESRLKPTCV 293
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 128/298 (42%), Gaps = 47/298 (15%)
Query: 7 VKAGGMMSLAIDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
V G + A+ G L+ WG N L T+ G + + + G V V
Sbjct: 134 VACGEFHTCAVTTTGELYTWGDGTHNVGLLGHGTDAGHWIPKRISGA----LDGLPVAYV 189
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+CG+ H + S G+ + ++G + G LG G+ S PK +E+ S
Sbjct: 190 SCGTWHTALITSMGQLF--------TFGDGSFGVLGHGNLTSISCPKEVESL---SGLKT 238
Query: 123 YEVTCGSFHTA-----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V CG +HTA ++TH + + +T+G G+ +LGHG +S L P V L
Sbjct: 239 IAVACGVWHTAAIVEVIVTHSS--SSVSAGKLFTWGDGDKHRLGHGDKESRLKPTCVASL 296
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISG 235
Y + V CG T ++++G V S G + LG N D P L+
Sbjct: 297 IDYDFY-RVACGHSLTVCLTTSGKVLSMGNSVYGQLG---------NPNSDGRLPCLVED 346
Query: 236 N--GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G H +QVACG+ H ++T ++++WG+G +G LG G D P V
Sbjct: 347 RIAGEH------VLQVACGSYHVAVLTGRS-EVFTWGKGANGRLGHGDIEDRKVPTQV 397
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 29/259 (11%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V G + I + G L+ +G+ G +L S P V G + VA
Sbjct: 186 VAYVSCGTWHTALITSMGQLFTFGDGSF---GVLGHGNLTSISCPKEVESLSGLKTIAVA 242
Query: 64 CGSEHVVALVSAGETYKGEDLVC---YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
CG H A+V T+ + ++WG + +LG GD+ESRL+P + + +
Sbjct: 243 CGVWHTAAIVEVIVTHSSSSVSAGKLFTWGDGDKHRLGHGDKESRLKPTCVASLID---Y 299
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
Y V CG T LT + M S+ GQLG+ + L P V++
Sbjct: 300 DFYRVACGHSLTVCLTTSGKVLSMGNSV--------YGQLGNPNSDGRL-PCLVEDRIAG 350
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+++ V CG +H +V++ +V++WG KG N L + D P +
Sbjct: 351 EHVLQVACGSYHVAVLTGRSEVFTWG--KG----ANGRLGHGDIEDRKVPTQVE-----A 399
Query: 241 PKFQDPVQVACGAAHTVLV 259
K + +ACGA T +
Sbjct: 400 LKDRAVRHIACGANFTAAI 418
>gi|313236433|emb|CBY11750.1| unnamed protein product [Oikopleura dioica]
Length = 2239
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 125/287 (43%), Gaps = 65/287 (22%)
Query: 48 PSPVWDFHGHTVVKVA--CGSE-HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES 104
PS V G V ++ GS+ H +A+ +GE ++WG + G+LG G+ E
Sbjct: 1459 PSLVSALQGFIVTHLSSSVGSDGHTLAITESGE--------LFTWGDGDYGKLGHGNSER 1510
Query: 105 RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
+ RP+++ET ++ V + CG HTA++T +TFG G+ G+LGHG
Sbjct: 1511 QRRPRLVETLVGET---VVDGCCGYKHTAVVT--------ATGYLYTFGYGDYGRLGHGN 1559
Query: 165 TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAG-DVWSWGM----EKGLG------- 212
T S P V + + SV CGL HT +S G VW++G + GLG
Sbjct: 1560 TTSKKTPTLVHDCQN---IASVSCGLNHTLALSRDGMTVWAFGDGDFGKLGLGNTLAVQS 1616
Query: 213 -----LCPNASLTRNEAGDAISPIL-ISG----------NGPHGP-------KFQD---- 245
N + G S L I+G NG GP K +
Sbjct: 1617 PNKIAALENVGIKSVHCGHQWSVFLAINGDVYVCGQDAFNGIGGPGQTVIPTKLETINKR 1676
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
Q++CGA +T+ + +DG +WSWG G +G G P + L
Sbjct: 1677 VFQISCGAEYTLALDEDG-NVWSWGNNSDGQVGCGHFNKVHEPLLTL 1722
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 29/219 (13%)
Query: 77 ETYKGEDLVCYSWGANNNGQLGLGDRESR--LRPKIIETFNQDSPWAVYEVTCGSFHTAL 134
E+++G Y WG +GQLGL R P+ +E F+ + + G T L
Sbjct: 1376 ESWRGVKAKAYVWGGVRHGQLGLNMNVGRHCALPRRLEAFDN-----MQTIELGLNCTFL 1430
Query: 135 LTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV--YLVSVDCGLFH 192
+ + G G G+LGHG + VP V L ++ +L S H
Sbjct: 1431 CS--------ASGAVTSTGEGSYGRLGHGNSDDLSVPSLVSALQGFIVTHLSSSVGSDGH 1482
Query: 193 TSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACG 252
T ++ +G++++WG + G + + R + ++ + V CG
Sbjct: 1483 TLAITESGELFTWG-DGDYGKLGHGNSERQRRPRLVETLV----------GETVVDGCCG 1531
Query: 253 AAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT +VT GY L+++G G G LG G T P +V
Sbjct: 1532 YKHTAVVTATGY-LYTFGYGDYGRLGHGNTTSKKTPTLV 1569
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 84/241 (34%), Gaps = 71/241 (29%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
+LAI +G L+ WG+ D G + P V G TVV CG +H +
Sbjct: 1483 TLAITESGELFTWGDG---DYGKLGHGNSERQRRPRLVETLVGETVVDGCCGYKHTAVVT 1539
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+ G Y++G + G+LG G+ S+ P ++ + V+CG HT
Sbjct: 1540 ATG--------YLYTFGYGDYGRLGHGNTTSKKTPTLVHDCQN-----IASVSCGLNHTL 1586
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY------------- 180
L+ W FG G+ G+LG G T + P ++ L
Sbjct: 1587 ALSRDGM-------TVWAFGDGDFGKLGLGNTLAVQSPNKIAALENVGIKSVHCGHQWSV 1639
Query: 181 -------VYL----------------------------VSVDCGLFHTSVVSSAGDVWSW 205
VY+ + CG +T + G+VWSW
Sbjct: 1640 FLAINGDVYVCGQDAFNGIGGPGQTVIPTKLETINKRVFQISCGAEYTLALDEDGNVWSW 1699
Query: 206 G 206
G
Sbjct: 1700 G 1700
>gi|158259079|dbj|BAF85498.1| unnamed protein product [Homo sapiens]
Length = 1027
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTEIACGRQHTSTFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G LV S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLVGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 140 VQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ ++ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTEIACGRQHTSTFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKR---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLVGSEECIRVPRNIKSLSDIQI-------------VQVACGYYHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|444916978|ref|ZP_21237086.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
gi|444711624|gb|ELW52563.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
Length = 734
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 128/294 (43%), Gaps = 50/294 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S + +V AGG SLA+ + G +W WG+ L D +T P V + G
Sbjct: 185 LSGVIAVVAGGYYSLALRSDGTVWAWGDNRYGQLGDGTTT------QRAVPVQVLNLSG- 237
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+ ++ GS H VAL S G ++WG N GQLG G SR +P + +
Sbjct: 238 -VMNLSAGSFHTVALRSDGS--------VWAWGFNAYGQLGDGTTTSRFQPVQVGLSD-- 286
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + G++H+ L R + W +G QLG GTT S+ VP Q L
Sbjct: 287 ----VLTLVAGNYHS--LAVRS------DGAVWAWGDNRYRQLGDGTTTSSRVPVQ-SGL 333
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
V LV G H+ V+ S G VWSWG + G + + + +S + +
Sbjct: 334 SGGVTLV---AGYKHSLVLRSDGTVWSWG-DNVFGQLGDGTFNPRSSAVKVSWLSLG--- 386
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V+ G H+V++ +G +W+WG SG LG G +D A V
Sbjct: 387 --------RADVSSGQLHSVVLDSNG-AVWAWGDNYSGQLGNGTGLDSLVAAPV 431
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 127/297 (42%), Gaps = 63/297 (21%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
V +G + S+ +D+ GA+W WG+ S G + + S +PV G V V+
Sbjct: 388 ADVSSGQLHSVVLDSNGAVWAWGDNY---SGQLGNGTGLDSLVAAPV-GLGGS--VAVSA 441
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G +H + L + D ++WG N +GQLG G R RP + + V
Sbjct: 442 GFKHTLVLKA--------DTTVWAWGVNEHGQLGDGTLTDRTRPVQVAGLS-----GVSA 488
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
V+ GS+H+ L R N W +G GQLG GT L P QV L +V
Sbjct: 489 VSAGSYHSLAL----RSN----GTVWAWGFNRYGQLGDGTNTDRLQPVQVAGLSG---VV 537
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
+V G H+ + S G VW+WG N G G+G + +F
Sbjct: 538 AVAAGDSHSLALRSDGTVWAWGY--------------NFDGQI-------GDGSYSWRFL 576
Query: 245 DPVQ---------VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT-IDFFAPAIV 291
PVQ V+ G H++ + DG +W+WG SG LG G T I+ AP V
Sbjct: 577 -PVQVVGLSGVVSVSAGGYHSLALRSDG-TVWTWGYNGSGQLGDGSTAINKPAPVQV 631
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 121/293 (41%), Gaps = 44/293 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + +V AG SLA+ + G +W WG G + P V G VV
Sbjct: 483 LSGVSAVSAGSYHSLALRSNGTVWAWG---FNRYGQLGDGTNTDRLQPVQVAGLSG--VV 537
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H +AL S D ++WG N +GQ+G G R P + +
Sbjct: 538 AVAAGDSHSLALRS--------DGTVWAWGYNFDGQIGDGSYSWRFLPVQVVGLSGVV-- 587
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKELPQ 179
V+ G +H+ L + WT+G +GQLG G+T + P QV L
Sbjct: 588 ---SVSAGGYHSLALRS--------DGTVWTWGYNGSGQLGDGSTAINKPAPVQVAGLSG 636
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+VS+ G +H+ + S G VW+WG L + L R+ +P+ +SG
Sbjct: 637 ---VVSLGSGNYHSLGLRSDGTVWAWGFNFDGQLGDGSLLNRS------TPVRVSG---- 683
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
V V G H++ DG +W+WG G LG G D P VL
Sbjct: 684 ---LSGVVSVVAGDYHSLARRSDG-TVWAWGYNGEGQLGDGTRNDTLVPVWVL 732
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 120/290 (41%), Gaps = 48/290 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF-SLVSSFTPSPVWDFHGHTV 59
+S + SV +G SL + + G +W WG+ +T G + +S +P PV + V
Sbjct: 85 LSGVVSVASGDYHSLGLSSDGTVWAWGD------NTAGQLGNGTASASPVPVRVQNLSGV 138
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG-LGDRESRLRPKIIETFNQDS 118
V + G H +AL S D ++WG N QLG +G S L P + +
Sbjct: 139 VSLGSGFSHGLALRS--------DGTVWAWGDNRYNQLGNVGATRSNL-PVQVPGLS--- 186
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V V G +++ L + W +G GQLG GTT VP QV L
Sbjct: 187 --GVIAVVAGGYYSLALRS--------DGTVWAWGDNRYGQLGDGTTTQRAVPVQVLNLS 236
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
++++ G FHT + S G VW+WG L + +R P+ +
Sbjct: 237 G---VMNLSAGSFHTVALRSDGSVWAWGFNAYGQLGDGTTTSR------FQPVQVG---- 283
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
D + + G H++ V DG +W+WG R LG G T P
Sbjct: 284 ----LSDVLTLVAGNYHSLAVRSDG-AVWAWGDNRYRQLGDGTTTSSRVP 328
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 96/235 (40%), Gaps = 38/235 (16%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+ ++A G H V + S D ++WG N GQLG G P + +
Sbjct: 37 SAARLALGQYHSVGVHS--------DGTVWAWGFNRQGQLGDGTLVDSPTPVRVTNLS-- 86
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V V G +H+ L+ + W +G GQLG+GT ++ VP +V+ L
Sbjct: 87 ---GVVSVASGDYHSLGLSS--------DGTVWAWGDNTAGQLGNGTASASPVPVRVQNL 135
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+VS+ G H + S G VW+WG + N TR+ P+ +
Sbjct: 136 SG---VVSLGSGFSHGLALRSDGTVWAWGDNR-YNQLGNVGATRSNL-----PVQV---- 182
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
P + V G +++ + DG +W+WG R G LG G T P VL
Sbjct: 183 ---PGLSGVIAVVAGGYYSLALRSDG-TVWAWGDNRYGQLGDGTTTQRAVPVQVL 233
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 120/291 (41%), Gaps = 45/291 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S + G S+ + + G +W WG G +LV S TP V + G VV
Sbjct: 36 SSAARLALGQYHSVGVHSDGTVWAWG---FNRQGQLGDGTLVDSPTPVRVTNLSG--VVS 90
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VA G H + L S D ++WG N GQLG G + P ++ +
Sbjct: 91 VASGDYHSLGLSS--------DGTVWAWGDNTAGQLGNGTASASPVPVRVQNLSG----- 137
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH-GTTQSALVPEQVKELPQY 180
V+ GS + L R + W +G QLG+ G T+S L P QV P
Sbjct: 138 --VVSLGSGFSHGLALRS------DGTVWAWGDNRYNQLGNVGATRSNL-PVQV---PGL 185
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+++V G +++ + S G VW+WG + G + + T+ P+ +
Sbjct: 186 SGVIAVVAGGYYSLALRSDGTVWAWGDNR-YGQLGDGTTTQRAV-----PVQV------- 232
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ ++ G+ HTV + DG +W+WG G LG G T F P V
Sbjct: 233 LNLSGVMNLSAGSFHTVALRSDG-SVWAWGFNAYGQLGDGTTTSRFQPVQV 282
>gi|198415420|ref|XP_002129368.1| PREDICTED: similar to regulator of chromosome condensation (RCC1)
and BTB (POZ) domain containing protein 1 [Ciona
intestinalis]
Length = 554
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 110/248 (44%), Gaps = 36/248 (14%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
SS P + F G ++ ++ GS HV+ L G Y SWG N+ QLG G
Sbjct: 85 SSLEPRLLESFSGQKIISLSAGSGPHVLVLTQDGGVY--------SWGHNSYMQLGNGGT 136
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
P ++ +++ V ++ CGS H+ LT E +T+G GQ+G
Sbjct: 137 SPGTSPSLL---SRNISNKVVQIACGSHHSMALT--------TEGEVYTWGYNNCGQIGS 185
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLT 220
G+T + P +V ++ + CG + V+ +G+V+SWG LG+ N + T
Sbjct: 186 GSTANQGSPRKVTACIGNKRIIDITCGQTTSLCVTDSGEVYSWGYNGNGQLGVGNNVNQT 245
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A+ ++I+ QV CG AH + +TD+G ++ WG G LG+G
Sbjct: 246 NPCRVAALQGVVIA-------------QVVCGYAHALALTDNGV-VFGWGANSYGQLGSG 291
Query: 281 KTIDFFAP 288
+ P
Sbjct: 292 NKANTCTP 299
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 84/210 (40%), Gaps = 31/210 (14%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWG--NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT- 58
+++ + G S+A+ G ++ WG NC G S + +P V G+
Sbjct: 151 NKVVQIACGSHHSMALTTEGEVYTWGYNNC-----GQIGSGSTANQGSPRKVTACIGNKR 205
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
++ + CG + + +GE Y SWG N NGQLG+G+ ++ P +
Sbjct: 206 IIDITCGQTTSLCVTDSGEVY--------SWGYNGNGQLGVGNNVNQTNPCRVAAL---Q 254
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKE 176
+ +V CG H LT FG G N GQLG G + P QV
Sbjct: 255 GVVIAQVVCGYAHALALTDNGV----------VFGWGANSYGQLGSGNKANTCTPLQVAT 304
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
V ++ ++ + +G ++ WG
Sbjct: 305 RIGRVVCLAATHYSHSSAARNQSGHIYMWG 334
>gi|26353276|dbj|BAC40268.1| unnamed protein product [Mus musculus]
Length = 531
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 108/249 (43%), Gaps = 29/249 (11%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
S+ P + G + ++ GS V L + ED V Y+WG N QLG G
Sbjct: 61 STLVPKKLEALCGKKIKSLSYGSGPHVLLTT-------EDGVVYAWGHNGYSQLGNGTTN 113
Query: 104 SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
+ P ++ V EV CGS H+ L + + +G GQ+G G
Sbjct: 114 QGIAP--VQVCTNLLIKQVIEVACGSHHSMALA--------ADGELFAWGYNNCGQVGSG 163
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE 223
+T + P ++ +V++ CG + V +G+V+ WG N L
Sbjct: 164 STANQPTPRKITNCLHTKRVVNIACGQTSSMAVLDSGEVYGWGYNG------NGQLGLGN 217
Query: 224 AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
G+ ++P+ ++ HG Q+ CG AHT+ +TD+G L++WG G LGTG
Sbjct: 218 NGNQLTPVRVA--ALHGMCVN---QIVCGYAHTLALTDEGL-LYAWGANTYGQLGTGSKN 271
Query: 284 DFFAPAIVL 292
+ +P ++
Sbjct: 272 NLLSPTQIM 280
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 96/214 (44%), Gaps = 29/214 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG--NCPLPDSSTEGGFSLVSSFTPSPVWD-FHGH 57
+ Q+ V G S+A+ G L+ WG NC G S + TP + + H
Sbjct: 127 IKQVIEVACGSHHSMALAADGELFAWGYNNC-----GQVGSGSTANQPTPRKITNCLHTK 181
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +ACG +A++ +GE Y WG N NGQLGLG+ ++L P + +
Sbjct: 182 RVVNIACGQTSSMAVLDSGEVY--------GWGYNGNGQLGLGNNGNQLTPVRVAALH-- 231
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V ++ CG HT LT E + + +G GQLG G+ + L P Q+
Sbjct: 232 -GMCVNQIVCGYAHTLALTD--------EGLLYAWGANTYGQLGTGSKNNLLSPTQIMVE 282
Query: 178 PQYVYLVSVDCGLFHTSVV-SSAGDVWSWGMEKG 210
+ V ++ C HTS + G V+ WG +G
Sbjct: 283 KERVIEIAA-CHSTHTSAAKTQGGHVYMWGQCRG 315
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 107/262 (40%), Gaps = 40/262 (15%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + V T + V++VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLI-----KQVIEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
+ +WG NN GQ+G G ++ P+ I N V + CG T
Sbjct: 149 LF--------AWGYNNCGQVGSGSTANQPTPRKIT--NCLHTKRVVNIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L + + + CG HT ++
Sbjct: 193 SMAVLDSGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HGMCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTV 257
G +++WG T + G L+S K + AC + HT
Sbjct: 250 DEGLLYAWGAN-----------TYGQLGTGSKNNLLSPTQIMVEKERVIEIAACHSTHTS 298
Query: 258 LVTDDGYKLWSWG--RGRSGVL 277
G ++ WG RG+S +L
Sbjct: 299 AAKTQGGHVYMWGQCRGQSVIL 320
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSNCLGTGDNQSTLVPKKLEALCGKKIKSLSYGSGP-HVLLTTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+P+ + N + ++VACG+ H++ + DG +L++
Sbjct: 103 G------YSQLGNGTTNQGIAPVQVCTN----LLIKQVIEVACGSHHSMALAADG-ELFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 152 WGYNNCGQVGSGSTANQPTP 171
>gi|326522674|dbj|BAJ88383.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 134/292 (45%), Gaps = 34/292 (11%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ +G L+ WGN + G + VS + P + G V ++CG
Sbjct: 368 VACGEYHTCAVTLSGDLYTWGNGTF-NFGLSGHGNEVSHWMPKRLNGPLEGIHVSSISCG 426
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ + ++G + G LG GDR+S P+ +E+
Sbjct: 427 PWHTAVVTSAGQLF--------TFGDGSFGVLGHGDRQSISVPREVESLKG---LRTVRA 475
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ G+LGHG ++ LVP V L +
Sbjct: 476 ACGVWHTAAVVEVMVGNSSSSNCSSGKIFTWGDGDKGRLGHGDKETRLVPTCVASLVEPN 535
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ V CG T ++++G V++ G + LG N D + P + G
Sbjct: 536 F-CQVACGHCFTVALTTSGHVYTMGSSVYGQLG---------NPQADGMVPARVEGK--L 583
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F + +++CGA H ++T ++++WG+G +G LG G T D +P +V
Sbjct: 584 HKNFVE--EISCGAYHVAVLTSR-TEVYTWGKGANGRLGHGDTDDRNSPTLV 632
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 109/260 (41%), Gaps = 45/260 (17%)
Query: 46 FTPSPVWDFHGHTVVK-VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES 104
P P+ +F G V+ ++CG H + GE Y SWG + G+LG G
Sbjct: 300 LVPKPL-EFAGRLDVQNISCGGRHATLVTKQGEVY--------SWGEESGGRLGHGVDCD 350
Query: 105 RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG--ENGQLGH 162
+PK+I+ + V CG +HT +T L +T+G G G GH
Sbjct: 351 VPQPKLIDALAH---MNIELVACGEYHTCAVT--------LSGDLYTWGNGTFNFGLSGH 399
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G S +P+++ + +++ S+ CG +HT+VV+SAG ++++G + G+ +
Sbjct: 400 GNEVSHWMPKRLNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFG-DGSFGVLGHGDRQSI 458
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGR 271
+ + K V+ ACG HT V + K+++WG
Sbjct: 459 SVPREVESL----------KGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKIFTWGD 508
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G LG G P V
Sbjct: 509 GDKGRLGHGDKETRLVPTCV 528
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 103/244 (42%), Gaps = 43/244 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
+ S+ G + + +AG L+ +G +G F ++ S P V G
Sbjct: 419 HVSSISCGPWHTAVVTSAGQLFTFG---------DGSFGVLGHGDRQSISVPREVESLKG 469
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLV-------CYSWGANNNGQLGLGDRESRLRPK 109
V+ ACG H A+V E G ++WG + G+LG GD+E+RL P
Sbjct: 470 LRTVRAACGVWHTAAVV---EVMVGNSSSSNCSSGKIFTWGDGDKGRLGHGDKETRLVPT 526
Query: 110 IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
+ + + + +V CG T LT +T G GQLG+ +
Sbjct: 527 CVASLVEPN---FCQVACGHCFTVALT--------TSGHVYTMGSSVYGQLGN-PQADGM 574
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
VP +V+ ++ + CG +H +V++S +V++WG KG N L + D S
Sbjct: 575 VPARVEGKLHKNFVEEISCGAYHVAVLTSRTEVYTWG--KGA----NGRLGHGDTDDRNS 628
Query: 230 PILI 233
P L+
Sbjct: 629 PTLV 632
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 20/150 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSPV-WDFHGHTV 59
C V G ++A+ +G ++ G SS G G P+ V H + V
Sbjct: 535 NFCQVACGHCFTVALTTSGHVYTMG------SSVYGQLGNPQADGMVPARVEGKLHKNFV 588
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+++CG+ HV L S E Y +WG NG+LG GD + R P ++E
Sbjct: 589 EEISCGAYHVAVLTSRTEVY--------TWGKGANGRLGHGDTDDRNSPTLVEALKDKQ- 639
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
V V CG TA + K + + +SMC
Sbjct: 640 --VRSVVCGINFTAAICIHKWVSGVDQSMC 667
>gi|297686826|ref|XP_002820939.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
[Pongo abelii]
Length = 1057
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYCHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G LV S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLVGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 140 VQVACGYCHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLVGSEECIRVPRNIKSLSDIQI-------------VQVACGYCHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|442319627|ref|YP_007359648.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
gi|441487269|gb|AGC43964.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
Length = 1096
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 126/299 (42%), Gaps = 49/299 (16%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S+ SV AG SL + G +W WG + G S + P+ VW ++
Sbjct: 47 SRQGSVLAGRHHSLVLKADGTVWSWGGN---NYGQLGTGSTRQNPMPARVWRLF--SITA 101
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ G H +AL S D +SWGAN NGQLG G SR P +
Sbjct: 102 IGAGELHSLALKS--------DGTVWSWGANTNGQLGDGTLISRSVPAPVPGLTN----- 148
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V + G H+ +L + W +GL GQLG GT L P QV L
Sbjct: 149 VVAIAAGFSHSMVLKA--------DGTVWAWGLNAAGQLGDGTPTRRLTPVQVLGL---T 197
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ + G H+ +++ G +W+WG ++ LG T + G + + L
Sbjct: 198 GVKDIAAGNVHSLALTADGRLWTWGGNVDGQLG-------TGDLVGRSTAAAL------- 243
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTE 298
P V ++ G +H++++ DG +WSWG+ +G LG G + P V P LTE
Sbjct: 244 -PGMTGVVALSGGGSHSLILKMDG-SVWSWGKNDAGQLGLGSVVSTPTPTQV--PGLTE 298
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 120/292 (41%), Gaps = 51/292 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I ++ AG + SLA+ + G +W WG N L D +L+S P+PV VV
Sbjct: 99 ITAIGAGELHSLALKSDGTVWSWGANTNGQLGDG------TLISRSVPAPVPGL--TNVV 150
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H + L + D ++WG N GQLG G RL P +
Sbjct: 151 AIAAGFSHSMVLKA--------DGTVWAWGLNAAGQLGDGTPTRRLTPVQVLGLT----- 197
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++ G+ H+ LT R WT+G +GQLG G + LP
Sbjct: 198 GVKDIAAGNVHSLALTADGR--------LWTWGGNVDGQLGTG---DLVGRSTAAALPGM 246
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD-AISPILISGNGPH 239
+V++ G H+ ++ G VWSWG +N+AG + ++ +
Sbjct: 247 TGVVALSGGGSHSLILKMDGSVWSWG--------------KNDAGQLGLGSVVSTPTPTQ 292
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P + V V G H+V + DG +W+WG LG G +P V
Sbjct: 293 VPGLTEMVAVTGGGQHSVALRVDG-TVWAWGSNARAQLGDGTQTQRLSPCQV 343
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 124/282 (43%), Gaps = 46/282 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++++ +V GG S+A+ G +W WG+ + G + +P V G T V
Sbjct: 296 LTEMVAVTGGGQHSVALRVDGTVWAWGSNA---RAQLGDGTQTQRLSPCQV---TGLTQV 349
Query: 61 K--VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
K A G H VA+ GE ++WG+N+ GQ+G G +L P + +
Sbjct: 350 KGVAAGGGLHSVAVKGNGE--------VWAWGSNSEGQVGDGTYLMKLVPTTARVLVERA 401
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+V+ G HT L +P + W +GL QLG GTT + +P QV L
Sbjct: 402 -----DVSAGGGHTLAL----KP----DGTAWGWGLNAQSQLGDGTTTARPLPVQVLNLT 448
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ + +V G +H+ + G VW WG + +L R++ P+ +SG
Sbjct: 449 R---VAAVSAGTYHSLALKEDGTVWGWGANYWGAIGDGTALNRSQ------PVKVSGT-- 497
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ VA G H++ ++ DG +W+WG G LG G
Sbjct: 498 -----LVAMTVASGNFHSLALSVDG-SVWAWGDNSLGQLGDG 533
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 117/288 (40%), Gaps = 42/288 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ AG S+ + G +W WG L + G + TP V G V
Sbjct: 146 LTNVVAIAAGFSHSMVLKADGTVWAWG---LNAAGQLGDGTPTRRLTPVQVLGLTG--VK 200
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G+ H +AL + G ++WG N +GQLG GD R +
Sbjct: 201 DIAAGNVHSLALTADGR--------LWTWGGNVDGQLGTGDLVGRSTAAALPGMT----- 247
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++ G H+ +L ++ W++G + GQLG G+ S P QV P
Sbjct: 248 GVVALSGGGSHSLILK--------MDGSVWSWGKNDAGQLGLGSVVSTPTPTQV---PGL 296
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V+V G H+ + G VW+WG A L +SP ++G
Sbjct: 297 TEMVAVTGGGQHSVALRVDGTVWAWGSNA------RAQLGDGTQTQRLSPCQVTG----- 345
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
Q A G H+V V +G ++W+WG G +G G + P
Sbjct: 346 -LTQVKGVAAGGGLHSVAVKGNG-EVWAWGSNSEGQVGDGTYLMKLVP 391
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 118/292 (40%), Gaps = 52/292 (17%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
V AGG +LA+ G W WG L D +T + P PV + V
Sbjct: 401 ADVSAGGGHTLALKPDGTAWGWGLNAQSQLGDGTT--------TARPLPVQVLNLTRVAA 452
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP-KIIETFNQDSPW 120
V+ G+ H +AL ED + WGAN G +G G +R +P K+ T
Sbjct: 453 VSAGTYHSLALK--------EDGTVWGWGANYWGAIGDGTALNRSQPVKVSGTL------ 498
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-TQSALVPEQVKELPQ 179
V G+FH+ L+ ++ W +G GQLG GT T + P +V P
Sbjct: 499 VAMTVASGNFHSLALS--------VDGSVWAWGDNSLGQLGDGTVTPTRNAPFRV---PN 547
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+VS+ G H+ + + G VW WG + C + N P + G
Sbjct: 548 LEGVVSLAAGGEHSLALKADGTVWVWGRQD---TCADP---ENVGRVLRVPEQVQG---- 597
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D V V G H+V++ DG LW+WGR G L G D PA V
Sbjct: 598 ---LTDAVAVRAGRCHSVVLRADG-TLWAWGRNAEGQLADGTFTDRMTPARV 645
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 113/298 (37%), Gaps = 56/298 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + S+ G SLA+ G++ WG+ L D +T VS P V G
Sbjct: 847 LAGVLSIAVGARHSLALLGDGSVQAWGSNIQGQLGDGTT------VSRVLPVRVQGLTG- 899
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V +A G +AL D ++WG N GQLG L P +
Sbjct: 900 -VAAIAAGDGFSLALK--------HDGTVWAWGGNTLGQLGDNTTLRSLVPVRTQALT-- 948
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V V G H+ L + W +G G+LG GT L P QV L
Sbjct: 949 ---GVTAVAAGRNHSLALKG--------DGTLWAWGSNTYGELGDGTQARKLAPVQVTSL 997
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILI 233
+ ++D G H+ V+S G VW WG + G G+ N L +
Sbjct: 998 ---TGVSALDAGDHHSLAVTSGGKVWGWGRNQFGQVGKGVKSNWQLLPAQV--------- 1045
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P V VA G H++ + D +W+WG G G LGTG + +P V
Sbjct: 1046 -------PGLTSAVAVAGGGEHSLALLSD-RSVWAWGHGDMGQLGTGMSNLRLSPVQV 1095
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 125/309 (40%), Gaps = 62/309 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S+ ++ G LA+ G + WG L D +T V+ P+ V G
Sbjct: 797 LSECRAIAGGATHGLALKTDGRVLSWGANAEGELGDGTT------VARRAPAVVGPLAG- 849
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+ +A G+ H +AL+ G +WG+N GQLG G SR+ P ++
Sbjct: 850 -VLSIAVGARHSLALLGDGS--------VQAWGSNIQGQLGDGTTVSRVLPVRVQGLT-- 898
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + G + L H + W +G GQLG TT +LVP + + L
Sbjct: 899 ---GVAAIAAGDGFSLALKH--------DGTVWAWGGNTLGQLGDNTTLRSLVPVRTQAL 947
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDA-----ISPIL 232
+ +V G H+ + G +W+WG S T E GD ++P+
Sbjct: 948 ---TGVTAVAAGRNHSLALKGDGTLWAWG-----------SNTYGELGDGTQARKLAPVQ 993
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF-FAPAIV 291
++ + G H++ VT G K+W WGR + G +G G ++ PA V
Sbjct: 994 VT-------SLTGVSALDAGDHHSLAVTSGG-KVWGWGRNQFGQVGKGVKSNWQLLPAQV 1045
Query: 292 LWPPLTEEF 300
P LT
Sbjct: 1046 --PGLTSAV 1052
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 113/296 (38%), Gaps = 54/296 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF---SLVSSFTPSPVWDFHGH 57
++ +V+AG S+ + G LW WG + EG + TP+ V G
Sbjct: 598 LTDAVAVRAGRCHSVVLRADGTLWAWGR------NAEGQLADGTFTDRMTPARVDGLTG- 650
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+ + GSE +AL + D ++WG N GQLG G R RP + T
Sbjct: 651 -VISFSVGSEQTLALKA--------DGTAWAWGPNAQGQLGGGLSVPRTRPTQVPTLTD- 700
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT--QSALVPEQVK 175
V V G+ H +L +D+ W +G GQ+G G Q+A V +
Sbjct: 701 ----VRTVAMGAVHALVL-----KDDL---TLWAWGSNAEGQVGDGALDWQAAPVRSGLA 748
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
G+ V S G S + G L P A P+ + G
Sbjct: 749 ASRGLAAATQYSLGIALDGSVQSTGANASGQLGDGT-LFPRA-----------EPVPVIG 796
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +A GA H + + DG L SWG G LG G T+ APA+V
Sbjct: 797 -------LSECRAIAGGATHGLALKTDGRVL-SWGANAEGELGDGTTVARRAPAVV 844
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 118/294 (40%), Gaps = 61/294 (20%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +G SLA+ G++W WG+ +S + G V+ +P + VV +A G
Sbjct: 502 TVASGNFHSLALSVDGSVWAWGD----NSLGQLGDGTVTPTRNAPFRVPNLEGVVSLAAG 557
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR----PKIIETFNQDSPWA 121
EH +AL + D + WG + D E+ R P+ ++
Sbjct: 558 GEHSLALKA--------DGTVWVWGRQDT----CADPENVGRVLRVPEQVQGLTD----- 600
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V G H+ +L R + L W +G GQL GT + P +V L
Sbjct: 601 AVAVRAGRCHSVVL----RADGTL----WAWGRNAEGQLADGTFTDRMTPARVDGL---T 649
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS-----PILISGN 236
++S G T + + G W+WG PNA + + G +S P +
Sbjct: 650 GVISFSVGSEQTLALKADGTAWAWG--------PNA---QGQLGGGLSVPRTRPTQV--- 695
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
P D VA GA H +++ DD LW+WG G +G G +D+ A +
Sbjct: 696 ----PTLTDVRTVAMGAVHALVLKDD-LTLWAWGSNAEGQVGDGA-LDWQAAPV 743
>gi|395741726|ref|XP_003777632.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 [Pongo
abelii]
Length = 1049
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYCHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G LV S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLVGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 140 VQVACGYCHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLVGSEECIRVPRNIKSLSDIQI-------------VQVACGYCHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|224043366|ref|XP_002198142.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Taeniopygia
guttata]
Length = 537
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 109/250 (43%), Gaps = 31/250 (12%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + G + ++ GS HVV GE Y +WG N QLG G
Sbjct: 67 STIVPKKLEALCGKKISSLSYGSGPHVVLCTEDGEVY--------AWGHNGYSQLGNGTT 118
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
+ P ++ V EV CGS H+ L+ ++ + +G GQ+G
Sbjct: 119 NQGITP--VQVCTNLLIKKVVEVACGSHHSMALS--------MDGDLYAWGYNNCGQVGS 168
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+T + P +V Q +V + CG + V + G+V+ WG N L
Sbjct: 169 GSTANQPTPRRVSNCLQGKIVVGIACGQTSSMAVVNNGEVYGWGYNG------NGQLGLG 222
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
G+ ++P ++ H +Q+ACG AHT+ +TD+G L++WG G LGTG
Sbjct: 223 NNGNQLTPCRVA--ALHSVCV---LQIACGYAHTLALTDEGL-LYAWGANTYGQLGTGNK 276
Query: 283 IDFFAPAIVL 292
+ +P ++
Sbjct: 277 SNQLSPVQIM 286
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 81/322 (25%), Positives = 130/322 (40%), Gaps = 54/322 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + V T + VV+VACGS H +AL G+
Sbjct: 100 GEVYAWGHNGYSQLGNGTTNQGITPVQVCTNLLI-----KKVVEVACGSHHSMALSMDGD 154
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
Y +WG NN GQ+G G ++ P+ + Q V + CG + + +
Sbjct: 155 LY--------AWGYNNCGQVGSGSTANQPTPRRVSNCLQGK--IVVGIACGQTSSMAVVN 204
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
+ +G NGQLG G + L P +V L V ++ + CG HT ++
Sbjct: 205 NGEV--------YGWGYNGNGQLGLGNNGNQLTPCRVAAL-HSVCVLQIACGYAHTLALT 255
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA-CGAAHT 256
G +++WG L + +SP+ I + + V++A C +AHT
Sbjct: 256 DEGLLYAWGANT------YGQLGTGNKSNQLSPVQIM------MEKERVVEIAACHSAHT 303
Query: 257 VLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNT 307
+++ WG RG+S T FA V+W L+ E +D L
Sbjct: 304 SAAKTQSGQVYMWGQCRGQSVTFPHLTHFACTDDVFACFATPAVMWRLLSVE-HEDFLTV 362
Query: 308 GGLDDEIKTKDLEGAEERDEKL 329
E K+ + E D K
Sbjct: 363 A----ESLKKEFDSPETSDLKF 380
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS +VP++++ L + + +S G H + + G+V++WG
Sbjct: 50 FVFGLNCSNCLGTGDNQSTIVPKKLEALCGKKISSLSYGSGP-HVVLCTEDGEVYAWGHN 108
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+P+ + N + V+VACG+ H++ ++ DG L++
Sbjct: 109 G------YSQLGNGTTNQGITPVQVCTN----LLIKKVVEVACGSHHSMALSMDG-DLYA 157
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 158 WGYNNCGQVGSGSTANQPTP 177
>gi|356554129|ref|XP_003545401.1| PREDICTED: uncharacterized protein LOC100802464 [Glycine max]
Length = 1106
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 128/292 (43%), Gaps = 35/292 (11%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G S A+ +G L+ WGN + G + VS + P V G V ++CG
Sbjct: 366 VACGEYHSCAVTLSGDLYTWGNGTY-NYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCG 424
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ + ++G G LG GDR+S P+ +E+
Sbjct: 425 PWHTAVVTSAGQLF--------TFGDGTFGALGHGDRKSVSLPREVESLKG---LRTVRA 473
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ G+LGH ++ LVP V V
Sbjct: 474 ACGVWHTAAVVEVMVGNSSSSNCSSVDLFTWGDGDKGRLGHVDKEAKLVPTCVALAEHNV 533
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V CG T ++++G V++ G P N D PIL+ G
Sbjct: 534 --CQVACGHSLTVALTTSGRVYTMG-------SPVYGQLGNPQADGKLPILVEG------ 578
Query: 242 KFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + ++ACGA H ++T ++++WG+G +G LG G T D P +V
Sbjct: 579 KLSESFVEEIACGAYHVAVLTSR-TEVYTWGKGANGRLGHGDTDDRNTPTLV 629
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 102/235 (43%), Gaps = 47/235 (20%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +ACG H + GE + SWG + G+LG G L PK+IE + +
Sbjct: 311 VQNIACGGRHAALVTKQGEVF--------SWGEESGGRLGHGVDSDVLHPKLIEALSNTN 362
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG--ENGQLGHGTTQSALVPEQVKE 176
+ V CG +H+ +T L +T+G G G LGHG S VP++V
Sbjct: 363 ---IELVACGEYHSCAVT--------LSGDLYTWGNGTYNYGLLGHGNQVSHWVPKRVNG 411
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILIS 234
+ +++ + CG +HT+VV+SAG ++++ G LG S++ +++ +
Sbjct: 412 PLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSVSLPREVESLKGLRT- 470
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLG 278
V+ ACG HT V + L++WG G G LG
Sbjct: 471 ------------VRAACGVWHTAAVVEVMVGNSSSSNCSSVDLFTWGDGDKGRLG 513
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 20/140 (14%)
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
H V +VACG VAL ++G Y + G+ GQLG + +L P ++E +
Sbjct: 531 HNVCQVACGHSLTVALTTSGRVY--------TMGSPVYGQLGNPQADGKL-PILVE--GK 579
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
S V E+ CG++H A+LT R + +T+G G NG+LGHG T P V+
Sbjct: 580 LSESFVEEIACGAYHVAVLTSR--------TEVYTWGKGANGRLGHGDTDDRNTPTLVEA 631
Query: 177 LPQYVYLVSVDCGLFHTSVV 196
L + S+ CG T+ +
Sbjct: 632 LKDK-DVKSIACGTTFTAAI 650
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 20/150 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+C V G +++A+ +G ++ G+ L + +G ++ S + V
Sbjct: 532 NVCQVACGHSLTVALTTSGRVYTMGSPVYGQLGNPQADGKLPILVEGKLSESF------V 585
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++ACG+ HV L S E Y +WG NG+LG GD + R P ++E
Sbjct: 586 EEIACGAYHVAVLTSRTEVY--------TWGKGANGRLGHGDTDDRNTPTLVEALKDKD- 636
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
V + CG+ TA + K + + +SMC
Sbjct: 637 --VKSIACGTTFTAAICLHKWVSGVDQSMC 664
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G +L P+ + E + + ++ CG H ++V+ G+V+SWG E G L
Sbjct: 292 GAKMDSLFPKAL-ESAVVLDVQNIACGGRHAALVTKQGEVFSWGEESG------GRLGHG 344
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTG 280
D + P LI + VACG H+ VT G L++WG G G+LG G
Sbjct: 345 VDSDVLHPKLIEALSNTNIEL-----VACGEYHSCAVTLSG-DLYTWGNGTYNYGLLGHG 398
Query: 281 KTIDFFAPAIVLWP 294
+ + P V P
Sbjct: 399 NQVSHWVPKRVNGP 412
>gi|452822986|gb|EME30000.1| E3 ubiquitin-protein ligase HERC1 [Galdieria sulphuraria]
Length = 456
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 98/209 (46%), Gaps = 29/209 (13%)
Query: 87 YSWGANNNGQLGL-GDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y+WG N +LG G R+ +P++I+ F A+ +V CG HT +L L
Sbjct: 13 YTWGRAKNYRLGRRGTRDDSCQPELIKVFEN---CAIQQVACGGGHTLVL---------L 60
Query: 146 ESMCW-TFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
E C +FG + GQLG+GT + + L++V CG +H++ + G V++
Sbjct: 61 EDGCLHSFGYNQYGQLGNGTKVDSPLDASRDISSLSNKLIAVACGRYHSAALDVNGTVFT 120
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG K N L N+ P I+ H P+ ++ CG T +TDDG
Sbjct: 121 WGGGK------NGRLGHNDEQTRTIPCRIT----HLPRAH---KIFCGYHITAAITDDG- 166
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
L++WG G G LG G D + P V++
Sbjct: 167 -LYTWGWGEHGQLGQGSLEDSYGPKKVIF 194
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 120/288 (41%), Gaps = 49/288 (17%)
Query: 12 MMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVA 71
M+ + AL+ WG G + S P + F + +VACG H +
Sbjct: 1 MLRKEYRASSALYTWGRAKNYRLGRRG--TRDDSCQPELIKVFENCAIQQVACGGGHTLV 58
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRP-KIIETFNQDSPWAVYEVTCGS 129
L+ ED +S+G N GQLG G + +S L + I + + + V CG
Sbjct: 59 LL--------EDGCLHSFGYNQYGQLGNGTKVDSPLDASRDISSLSN----KLIAVACGR 106
Query: 130 FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCG 189
+H+A L + +T+G G+NG+LGH Q+ +P ++ LP+ + CG
Sbjct: 107 YHSAALD--------VNGTVFTWGGGKNGRLGHNDEQTRTIPCRITHLPRAHKIF---CG 155
Query: 190 LFHTSVVSSAG-DVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP-- 246
T+ ++ G W WG LG L GP F D
Sbjct: 156 YHITAAITDDGLYTWGWGEHGQLG----------------QGSLEDSYGPKKVIFDDANL 199
Query: 247 --VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
Q+ACG H ++ T+ G +++WG G LG G+ + ++ ++L
Sbjct: 200 AISQLACGDRHCLVRTESG-DVYTWGSNEFGQLGIGRYNEIYSSPVLL 246
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 28/203 (13%)
Query: 7 VKAGGMMSLAIDNAGAL-WMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVAC 64
+ G ++ AI + G W WG + G SL S+ P V +D + ++AC
Sbjct: 152 IFCGYHITAAITDDGLYTWGWG-----EHGQLGQGSLEDSYGPKKVIFDDANLAISQLAC 206
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRLRPKIIETFNQDSPWAVY 123
G H + +G+ Y +WG+N GQLG+G E P ++ + + V
Sbjct: 207 GDRHCLVRTESGDVY--------TWGSNEFGQLGIGRYNEIYSSPVLLTSL---AGMMVT 255
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
V G H+A +T+ +T+G G GQ GHG +P V+ L V++
Sbjct: 256 FVAAGDRHSAAVTN--------TGSLFTWGCGAEGQCGHGDYNDCDMPFLVESLVG-VFI 306
Query: 184 VSVDCGLFHTSVVSSAGDVWSWG 206
+ V CG T +S D++ +G
Sbjct: 307 LKVFCGHNFTVALSKDNDIYVFG 329
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 60/137 (43%), Gaps = 15/137 (10%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
V AG S A+ N G+L+ WG C G ++ P V G ++KV CG
Sbjct: 257 VAAGDRHSAAVTNTGSLFTWG-CGAEGQCGHGDYNDCD--MPFLVESLVGVFILKVFCGH 313
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
VAL K D+ Y +G N+ GQLG G + S P+ + S ++T
Sbjct: 314 NFTVALS------KDNDI--YVFGNNSYGQLGDGSKSSCCTPRKLFF----SIPGTIDIT 361
Query: 127 CGSFHTALLTHRKRPND 143
CG FH L T + N+
Sbjct: 362 CGHFHCTLWTTLEEQNE 378
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 139/366 (37%), Gaps = 64/366 (17%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPS-PVWDFHGHTVV 60
+++ +V G S A+D G ++ WG G T + P H
Sbjct: 97 NKLIAVACGRYHSAALDVNGTVFTWG------GGKNGRLGHNDEQTRTIPCRITHLPRAH 150
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
K+ CG H+ A ++ D Y+WG +GQLG G E PK + D+
Sbjct: 151 KIFCGY-HITAAIT--------DDGLYTWGWGEHGQLGQGSLEDSYGPKKV--IFDDANL 199
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
A+ ++ CG H + R D+ +T+G E GQLG G +
Sbjct: 200 AISQLACGDRHCLV---RTESGDV-----YTWGSNEFGQLGIGRYNEIYSSPVLLTSLAG 251
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI-SGNGPH 239
+ + V G H++ V++ G +++WG G C + + D P L+ S G
Sbjct: 252 MMVTFVAAGDRHSAAVTNTGSLFTWGC-GAEGQCGHG-----DYNDCDMPFLVESLVGVF 305
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG--------KTIDFFAPAIV 291
++V CG TV ++ D ++ +G G LG G + + F P +
Sbjct: 306 ------ILKVFCGHNFTVALSKDN-DIYVFGNNSYGQLGDGSKSSCCTPRKLFFSIPGTI 358
Query: 292 ----------LWPPLTEEFKQDELNTGGLD---DEIKTKDLEGAEERDEKLSSAMEEMKL 338
LW L E+ +++ + D T G + + +L E +
Sbjct: 359 DITCGHFHCTLWTTLEEQNEENHVEIRSRTESVDSCTTSSSTGISDEERRLK---ERISS 415
Query: 339 LQSKLS 344
L KL+
Sbjct: 416 LNGKLT 421
>gi|297686828|ref|XP_002820940.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
[Pongo abelii]
Length = 979
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYCHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 245
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 246 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 344
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG ++G LV S P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LDSDGQLGLVGSEECIRVPRNIKSLSDIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 140 VQVACGYCHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 240 RSQKIVYICCGEDHTAALTKEGGVFTFGA-GGYG-----QLGHNSTSHEINPRKV----- 288
Query: 239 HGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ Q+ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 289 ----FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E L P+ + F V +V CG HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKK---VRDVGCGLRHTVFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L +V+V CG HT ++ G V++WG
Sbjct: 53 GTVYTCGCNDLGQLGHEKSRKK--PEQVVALDAQ-NIVAVSCGEAHTLALNDKGQVYAWG 109
Query: 207 MEKG--LGLCPNASLTRNEAG-DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
++ LGL + R ++S I I VQVACG H+ L
Sbjct: 110 LDSDGQLGLVGSEECIRVPRNIKSLSDIQI-------------VQVACGYCHS-LALSKA 155
Query: 264 YKLWSWGRGRSGVLGTG 280
+++ WG+ + G LG G
Sbjct: 156 SEVFCWGQNKYGQLGLG 172
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L S + E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKSRKKPEQVVALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLDSDGQLG 117
>gi|357126800|ref|XP_003565075.1| PREDICTED: uncharacterized protein LOC100834588 [Brachypodium
distachyon]
Length = 1092
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 133/292 (45%), Gaps = 34/292 (11%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTVVKVACG 65
V G + A+ +G L+ WG+ G + +S + P + G V ++CG
Sbjct: 370 VACGEYHTCAVTLSGDLYTWGDGTF-KFGLLGHGNDISHWVPKKLHGPLEGIHVSSISCG 428
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H V + SAG+ + ++G + G LG GDRES PK +E+
Sbjct: 429 PFHTVIVTSAGQLF--------TFGDGSFGVLGHGDRESLSVPKEVESLKG---LRTVRA 477
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ G+LGHG +S LVP V L +
Sbjct: 478 ACGVWHTAAVVEVMAGNSSSSNCSSGKIFTWGDGDKGRLGHGDKESRLVPTCVAALVEPN 537
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ V CG T ++++G V++ G + LG N D + P + G
Sbjct: 538 F-CQVACGHCLTVALTTSGHVYTMGSAVYGQLG---------NPQADGMLPARVEGK--L 585
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F + +++CGA H ++T ++++WG+G +G LG G T D P +V
Sbjct: 586 HKNFVE--EISCGAYHVAVLTSR-TEVYTWGKGANGRLGHGNTDDKNTPTLV 634
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 106/248 (42%), Gaps = 47/248 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V ++CG +H + GE Y SWG + G+LG G PK+I+
Sbjct: 315 VQNISCGGKHAALVSKQGEIY--------SWGEESGGRLGHGVDCDVAHPKLIDALTH-- 364
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG--ENGQLGHGTTQSALVPEQVKE 176
+ V CG +HT +T L +T+G G + G LGHG S VP+++
Sbjct: 365 -MNIELVACGEYHTCAVT--------LSGDLYTWGDGTFKFGLLGHGNDISHWVPKKLHG 415
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILIS 234
+ +++ S+ CG FHT +V+SAG ++++G LG SL+ + +++ +
Sbjct: 416 PLEGIHVSSISCGPFHTVIVTSAGQLFTFGDGSFGVLGHGDRESLSVPKEVESLKGLRT- 474
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGKTI 283
V+ ACG HT V + K+++WG G G LG G
Sbjct: 475 ------------VRAACGVWHTAAVVEVMAGNSSSSNCSSGKIFTWGDGDKGRLGHGDKE 522
Query: 284 DFFAPAIV 291
P V
Sbjct: 523 SRLVPTCV 530
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 97/253 (38%), Gaps = 77/253 (30%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
+ S+ G ++ + +AG L+ +G +G F ++ S P V G
Sbjct: 421 HVSSISCGPFHTVIVTSAGQLFTFG---------DGSFGVLGHGDRESLSVPKEVESLKG 471
Query: 57 HTVVKVACGSEHVVALVS--AGETYKGEDLV--CYSWGANNNGQLGLGDRESRLRPKIIE 112
V+ ACG H A+V AG + ++WG + G+LG GD+ESRL P +
Sbjct: 472 LRTVRAACGVWHTAAVVEVMAGNSSSSNCSSGKIFTWGDGDKGRLGHGDKESRLVPTCVA 531
Query: 113 TFNQDS---------------------------------PWA----------------VY 123
+ + P A V
Sbjct: 532 ALVEPNFCQVACGHCLTVALTTSGHVYTMGSAVYGQLGNPQADGMLPARVEGKLHKNFVE 591
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
E++CG++H A+LT R + +T+G G NG+LGHG T P V+ L +
Sbjct: 592 EISCGAYHVAVLTSR--------TEVYTWGKGANGRLGHGNTDDKNTPTLVEALKDK-QV 642
Query: 184 VSVDCGLFHTSVV 196
+V CG T+ +
Sbjct: 643 RNVVCGTNFTAAI 655
>gi|405954128|gb|EKC21651.1| Putative E3 ubiquitin-protein ligase HERC1 [Crassostrea gigas]
Length = 826
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 125/281 (44%), Gaps = 38/281 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTV 59
+ +I S K SLA+ G ++ WG+ D G + + P V G V
Sbjct: 481 VKKISSSKGSDGHSLALTTTGEVYSWGD---GDYGKLGHGTHSTQKIPKLVKGPLVGKVV 537
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V+ G H A+ GE Y +WG G+LG S+ P +++
Sbjct: 538 KCVSAGYRHSAAVTEDGELY--------TWGDGEFGRLGHDYTSSKNFPTKVQSIE---- 585
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+V V CG HT ++ + W+FG GENG+LGHG T L P+ ++ L
Sbjct: 586 -SVGLVACGGSHTLAVSQDGK-------TIWSFGGGENGKLGHGDTNRQLKPKVIEAL-N 636
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+Y+ V CG + V+S+G +++WG LG C +A T A+ P L+
Sbjct: 637 GLYIRKVACGSQSSLAVTSSGQLYAWGCGAILG-CGSAEYT------ALRPRLV-----E 684
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ + V +ACG +H + +T + ++++WG G G G
Sbjct: 685 DLQSKRMVDIACGDSHVIALTHES-EVYAWGNNAMGQCGQG 724
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 24/203 (11%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD + PK F++ + H+ LT
Sbjct: 453 GKGSYGRLGLGDSNNCSVPKK-PLFDKKYVKKISSSKGSDGHSLALTTTGE--------V 503
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G G+ G+LGHGT + +P+ VK + V G H++ V+ G++++WG
Sbjct: 504 YSWGDGDYGKLGHGTHSTQKIPKLVKGPLVGKVVKCVSAGYRHSAAVTEDGELYTWG--- 560
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWS 268
E G S N P + + V VACG +HT+ V+ DG +WS
Sbjct: 561 -----------DGEFGRLGHDYTSSKNFPTKVQSIESVGLVACGGSHTLAVSQDGKTIWS 609
Query: 269 WGRGRSGVLGTGKTIDFFAPAIV 291
+G G +G LG G T P ++
Sbjct: 610 FGGGENGKLGHGDTNRQLKPKVI 632
>gi|401413326|ref|XP_003886110.1| putative regulator of chromosome condensation domain-containing
protein [Neospora caninum Liverpool]
gi|325120530|emb|CBZ56084.1| putative regulator of chromosome condensation domain-containing
protein [Neospora caninum Liverpool]
Length = 717
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 117/283 (41%), Gaps = 62/283 (21%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR------ 107
G V ++ACG +HV A V+ E+ Y WG GQ+G SR
Sbjct: 404 LRGKRVTQIACG-KHVSAAVT-------EEGDLYVWGEGRGGQVGPPPSPSRRSQDRKKS 455
Query: 108 ----------------PKIIE---------TFNQDSPWAVYEVTCGSFHTALLTHRKRPN 142
P+ +E F + +P V +V CGS H A LT
Sbjct: 456 DCISTSSSGLSFNVRTPRKLEVYGLAEGEEAFRERTPKKVVQVACGSSHCAALTE----- 510
Query: 143 DMLESMCWTFGLGENGQLGHGT-TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+T+G + GQLG G ++ L P +V L +VSV CG F T +S G+
Sbjct: 511 ---NGEVYTWGSDDYGQLGLGKESRFVLSPRRVDTLADK-KVVSVRCGHFFTCCTTSTGE 566
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH-GPKFQDP---VQVACGAAHTV 257
V+ WG + G C N DA P+LIS P G + + V G H
Sbjct: 567 VFVWGYGRD-GECGNGR------SDAALPVLISTLEPQPGGRKRGRGKVVDTVAGGGHLA 619
Query: 258 LVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEF 300
T++G LW WGRGR G LG G I+ A + + P L EE
Sbjct: 620 AWTEEG-GLWMWGRGREGQLGRGDAIESVAASRDV-PQLVEEL 660
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 101/263 (38%), Gaps = 61/263 (23%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL------------GDRESRL 106
VV VACG +H +AL +GE YSWG N +G+ G G+R+
Sbjct: 298 VVAVACGEDHTLALTESGEV--------YSWGGNAHGECGRAETSDNAEAEGGGERQPAR 349
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
+P+ + W V G +D ++ G +
Sbjct: 350 KPR------RSWLWGVIRGDKGEGDVDTSERDSSASDA-----------DSPWAGRTEKE 392
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTR----N 222
LV +V + + + CG ++ V+ GD++ WG +G + P S +R
Sbjct: 393 RGLVGGRVDGALRGKRVTQIACGKHVSAAVTEEGDLYVWGEGRGGQVGPPPSPSRRSQDR 452
Query: 223 EAGDAISP----------------ILISGNGPHGPKFQDP---VQVACGAAHTVLVTDDG 263
+ D IS + G + + P VQVACG++H +T++G
Sbjct: 453 KKSDCISTSSSGLSFNVRTPRKLEVYGLAEGEEAFRERTPKKVVQVACGSSHCAALTENG 512
Query: 264 YKLWSWGRGRSGVLGTGKTIDFF 286
++++WG G LG GK F
Sbjct: 513 -EVYTWGSDDYGQLGLGKESRFV 534
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 97/272 (35%), Gaps = 88/272 (32%)
Query: 85 VCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPND 143
V YSWG+ +GQLGLG S P+ + + + G+FH+ T R
Sbjct: 179 VLYSWGSGIDGQLGLGGSILSVSTPQRVPASALHDGECISQCAAGAFHSVCCTSLGR--- 235
Query: 144 MLESMCWTFGLGENGQLGH--------------------GTTQSALVPEQVKELPQYV-- 181
+T+G G +LGH T S + V+ LP+ V
Sbjct: 236 -----VFTWGRGGKNRLGHDWPRDAPSSAVSSGDKPLRSSTLSSGVAETAVQTLPKCVEG 290
Query: 182 ------YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN------------- 222
+V+V CG HT ++ +G+V+SWG G C A + N
Sbjct: 291 LWRVSARVVAVACGEDHTLALTESGEVYSWGG-NAHGECGRAETSDNAEAEGGGERQPAR 349
Query: 223 ---------------------------EAGDAISPI---------LISGNGPHGPKFQDP 246
A DA SP L+ G + +
Sbjct: 350 KPRRSWLWGVIRGDKGEGDVDTSERDSSASDADSPWAGRTEKERGLVGGRVDGALRGKRV 409
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
Q+ACG + VT++G L+ WG GR G +G
Sbjct: 410 TQIACGKHVSAAVTEEG-DLYVWGEGRGGQVG 440
>gi|119574650|gb|EAW54265.1| hect domain and RLD 4, isoform CRA_e [Homo sapiens]
Length = 947
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 28 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLLGIPFMQV 85
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 86 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 135
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 136 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 185
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 186 VTEIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 234
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 40/238 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 29 IVQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-LG 79
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 80 IPFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL 129
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 130 -RSQKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV---- 178
Query: 238 PHGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ ++ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 179 -----FELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 231
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ +V V CG +H+ +S A +V+ WG K L + + + +L G
Sbjct: 27 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLL-------G 79
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F +QVA G AH+ ++T G ++ WGR + G LG D + P ++
Sbjct: 80 IPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGLNDENDRYVPNLL 126
>gi|413951231|gb|AFW83880.1| putative regulator of chromosome condensation (RCC1) family protein
[Zea mays]
Length = 959
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 134/298 (44%), Gaps = 39/298 (13%)
Query: 4 ICSV---KAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD-FHGHTV 59
IC+V G + A+ +G L+ WG+ + G + VS + P + GH V
Sbjct: 128 ICNVDIVACGEFHTCAVTTSGELYTWGD-GTHNIGLLGNGTDVSHWIPKRISGVLEGHQV 186
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V+CG+ H + S G+ + ++G G LG G+RES P+ +E+ S
Sbjct: 187 AYVSCGTWHTALVTSRGQLF--------TFGDGTFGVLGHGNRESFSCPREVESL---SG 235
Query: 120 WAVYEVTCGSFHTALLTH---RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V CG +HTA + + + M +T+G G+ +LGHG + L P V
Sbjct: 236 LKTIAVACGVWHTAAVVEVIVTQSSSSMSSGKLFTWGDGDKHRLGHGDKEPKLKPTCVAS 295
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILIS 234
L Y + + CG T ++++G V S G + LG N D P LI
Sbjct: 296 LIDYDF-CRIACGHSLTVGLTTSGQVLSMGNTVYGQLG---------NPRSDGKLPCLIE 345
Query: 235 G-NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G H VQVACG+ H ++T+ ++++WG+G +G LG G D P +V
Sbjct: 346 DIMGEH------VVQVACGSYHVAVLTNKS-EVFTWGKGANGRLGHGDVEDRKIPTLV 396
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 124/292 (42%), Gaps = 48/292 (16%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSS------FTPSPVWDFHGHTVVKVACGSEHVVA 71
D++G +++WG ++ G +++ S P P+ V V CG +H
Sbjct: 32 DSSGDVYVWGEVICDNTVRVGPDTVIRSTAKADFLLPKPLESKLVLDVYHVDCGVKHAAL 91
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
+ GE + +WG + G+LG G RE + P+++E+ + V V CG FH
Sbjct: 92 VTKNGEVF--------TWGEESGGRLGHGSREDSVHPRLVESL---AICNVDIVACGEFH 140
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF 191
T +T E W G G LG+GT S +P+++ + + + V CG +
Sbjct: 141 TCAVTTSG------ELYTWGDGTHNIGLLGNGTDVSHWIPKRISGVLEGHQVAYVSCGTW 194
Query: 192 HTSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV 249
HT++V+S G ++++ G LG S + +++S + + V
Sbjct: 195 HTALVTSRGQLFTFGDGTFGVLGHGNRESFSCPREVESLSGL-------------KTIAV 241
Query: 250 ACGAAHT-----VLVTDDGY-----KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
ACG HT V+VT KL++WG G LG G P V
Sbjct: 242 ACGVWHTAAVVEVIVTQSSSSMSSGKLFTWGDGDKHRLGHGDKEPKLKPTCV 293
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 77/192 (40%), Gaps = 38/192 (19%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNC---PLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
C + G +++ + +G + GN L + ++G P + D G VV
Sbjct: 301 FCRIACGHSLTVGLTTSGQVLSMGNTVYGQLGNPRSDGKL-------PCLIEDIMGEHVV 353
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACGS HV L + E ++WG NG+LG GD E R P ++E+
Sbjct: 354 QVACGSYHVAVLTNKSEV--------FTWGKGANGRLGHGDVEDRKIPTLVESLRDR--- 402
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWT----FGLGE-------------NGQLGHG 163
AV + CGS T+ + K + +S C + FG N H
Sbjct: 403 AVRHIACGSNFTSAICQHKWVSGAEQSQCASCRQPFGFTRKRHNCHNCGLVHCNACTSHK 462
Query: 164 TTQSALVPEQVK 175
++AL P K
Sbjct: 463 VLRAALAPNPAK 474
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80
G L+ WG+ D G P+ V + ++ACG V L ++G+
Sbjct: 266 GKLFTWGD---GDKHRLGHGDKEPKLKPTCVASLIDYDFCRIACGHSLTVGLTTSGQVL- 321
Query: 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKR 140
S G GQLG + +L P +IE + V +V CGS+H A+LT++
Sbjct: 322 -------SMGNTVYGQLGNPRSDGKL-PCLIEDIMGEH---VVQVACGSYHVAVLTNK-- 368
Query: 141 PNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
S +T+G G NG+LGHG + +P V+ L + + CG TS +
Sbjct: 369 ------SEVFTWGKGANGRLGHGDVEDRKIPTLVESLRDRA-VRHIACGSNFTSAI 417
>gi|297694075|ref|XP_002824322.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Pongo abelii]
gi|332241941|ref|XP_003270143.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Nomascus
leucogenys]
Length = 531
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGIAP--IQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLSPAHIM 280
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 129/322 (40%), Gaps = 54/322 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLI-----KQVVEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
+ +WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 VF--------AWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKRVVGIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA-CGAAHT 256
G +++WG L + +SP I + + V++A C +AHT
Sbjct: 250 DEGLLYAWGANT------YGQLGTGNKNNLLSPAHIM------VEKERVVEIAACHSAHT 297
Query: 257 VLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNT 307
G ++ WG RG+S +L T FA V W L+ E +D L
Sbjct: 298 SAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACFATPAVSWRLLSVE-HEDFLTV 356
Query: 308 GGLDDEIKTKDLEGAEERDEKL 329
E K+ + E D K
Sbjct: 357 A----ESLKKEFDSPETADLKF 374
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSNCLGTGDNQSTLVPKKLEGLCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+PI + N + V+VACG+ H++ + DG ++++
Sbjct: 103 G------YSQLGNGTTNQGIAPIQVCTN----LLIKQVVEVACGSHHSMALAADG-EVFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 152 WGYNNCGQVGSGSTANQPTP 171
>gi|221113828|ref|XP_002154529.1| PREDICTED: RCC1 and BTB domain-containing protein 1-like, partial
[Hydra magnipapillata]
Length = 364
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 96/209 (45%), Gaps = 29/209 (13%)
Query: 15 LAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVS 74
LA+ ++G L+ WG+ G S PV + V++VACGS H +AL
Sbjct: 88 LAVTDSGELYSWGH------GGYGQLGHTSEEKSKPVLVYMQKKVIQVACGSYHSIALTE 141
Query: 75 AGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTAL 134
GE Y +WG+NN GQLGLG ++ PK + + V+CG T +
Sbjct: 142 DGEVY--------AWGSNNCGQLGLGISNNQATPKRVSLIPSKK---IVSVSCGQSFTVM 190
Query: 135 LTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTS 194
LT + +++G NGQLG + L P +V ++ + CG+ H
Sbjct: 191 LT--------TDGELYSWGYNGNGQLGIENNTNQLQPVRVTGSLFGKFIEKIVCGMAHVL 242
Query: 195 VVSSAGDVWSWGM----EKGLGLCPNASL 219
V++ G+++SWG + GLG N S+
Sbjct: 243 VLTDIGELYSWGANSYGQLGLGTTHNTSV 271
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 107/252 (42%), Gaps = 67/252 (26%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQ------------------------------ 116
Y+ G N NG LG+GD S L PKIIE Q
Sbjct: 44 YALGFNGNGCLGVGDGSSTLEPKIIEQLCQKDIVQLAYGMGPHVLAVTDSGELYSWGHGG 103
Query: 117 -----------DSPWAVY------EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQ 159
P VY +V CGS+H+ LT + + +G GQ
Sbjct: 104 YGQLGHTSEEKSKPVLVYMQKKVIQVACGSYHSIALTE--------DGEVYAWGSNNCGQ 155
Query: 160 LGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
LG G + + P++V +P +VSV CG T ++++ G+++SWG N L
Sbjct: 156 LGLGISNNQATPKRVSLIPSK-KIVSVSCGQSFTVMLTTDGELYSWGYNG------NGQL 208
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
+ + P+ ++G+ KF + ++ CG AH +++TD G +L+SWG G LG
Sbjct: 209 GIENNTNQLQPVRVTGS--LFGKFIE--KIVCGMAHVLVLTDIG-ELYSWGANSYGQLGL 263
Query: 280 GKTIDFFAPAIV 291
G T + P ++
Sbjct: 264 GTTHNTSVPTLI 275
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTVVK 61
+I SV G ++ + G L+ WG + G + + P V G + K
Sbjct: 177 KIVSVSCGQSFTVMLTTDGELYSWG---YNGNGQLGIENNTNQLQPVRVTGSLFGKFIEK 233
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+ CG HV+ L GE YSWGAN+ GQLGLG + P +I T D
Sbjct: 234 IVCGMAHVLVLTDIGE--------LYSWGANSYGQLGLGTTHNTSVPTLINTTTDD 281
>gi|386780927|ref|NP_001247543.1| RCC1 and BTB domain-containing protein 1 [Macaca mulatta]
gi|402902026|ref|XP_003913930.1| PREDICTED: RCC1 and BTB domain-containing protein 1 isoform 1
[Papio anubis]
gi|355754700|gb|EHH58601.1| Regulator of chromosome condensation and BTB domain-containing
protein 1 [Macaca fascicularis]
gi|383419643|gb|AFH33035.1| RCC1 and BTB domain-containing protein 1 [Macaca mulatta]
gi|383419645|gb|AFH33036.1| RCC1 and BTB domain-containing protein 1 [Macaca mulatta]
Length = 531
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGIAP--IQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLSPAHIM 280
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 129/322 (40%), Gaps = 54/322 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLI-----KQVVEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
+ +WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 VF--------AWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKRVVGIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA-CGAAHT 256
G +++WG L + +SP I + + V++A C +AHT
Sbjct: 250 DEGLLYAWGANT------YGQLGTGNKNNLLSPAHIM------VEKERVVEIAACHSAHT 297
Query: 257 VLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNT 307
G ++ WG RG+S +L T FA V W L+ E +D L
Sbjct: 298 SAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACFATPAVSWRLLSVE-HEDFLTV 356
Query: 308 GGLDDEIKTKDLEGAEERDEKL 329
E K+ + E D K
Sbjct: 357 A----ESLKKEFDSPETADLKF 374
>gi|221485260|gb|EEE23541.1| regulator of chromosome condensation domain-containing protein,
putative [Toxoplasma gondii GT1]
Length = 1205
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 123/275 (44%), Gaps = 56/275 (20%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIE 112
F +V +VA G H + + KG+ + WG N + LG+G + R+ P ++
Sbjct: 43 FGPASVKRVALGLYHTLVV-----GLKGDQPQLFGWGKNYSNVLGMGVEIRERVFPGLVP 97
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHR-KRPNDMLESMCWTFGLGENGQLGHGTTQSALV- 170
F S +EV+CG+ ++A+L R ++P + +TFGLG G+LG+ ++ V
Sbjct: 98 FF---SKMGTFEVSCGTNNSAVLVKRAQQPGGKV----YTFGLGNRGRLGYPKNKADGVA 150
Query: 171 --------------PEQVKELPQYVY------LVSVDCGLFHTSVVSSAGDVWSWGMEKG 210
P P V + + CG HT +S G +++WG+
Sbjct: 151 GYQGDFSGDGQEDGPSWFTPKPSRVRFRDKCKIARISCGADHTLALSDEGALYAWGVGS- 209
Query: 211 LGLCPNASLTRNEAGDAISPILI-----SGNGPH------GPKFQDPVQVAC---GAAHT 256
+L + + D+ +P+ + +G+G G DPV V C GA H+
Sbjct: 210 -----YGNLGQGDTSDSYTPVRVYLGSEAGSGKKKENVGVGKVRADPVVVTCCSAGAKHS 264
Query: 257 VLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ T DG LW+WG G +G LG G +PA+V
Sbjct: 265 MACTSDG-TLWTWGHGGNGRLGLGHNRGSLSPAVV 298
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 139/323 (43%), Gaps = 76/323 (23%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL---VSSFTPSPV-WDFHGHTVVK 61
S++ G ++A+ AGA+W+WG S+ +G L V PV + + +
Sbjct: 504 SLECGESHTIALTGAGAVWVWG------SNDDGQLGLGEDVEEDQYEPVKLECFSTPIRR 557
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ACGS+H +A+ G+ + +WGAN+NGQLGLG P + Q
Sbjct: 558 IACGSKHCLAVAQYGDVF--------AWGANDNGQLGLGVVRPSFEPAAVTALRQ----- 604
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESM------CWTFGLGENGQLGHG---TTQSALVPE 172
+V CG ++A +T + W +G E+G+LG G + S L P+
Sbjct: 605 AVDVFCGDDYSACITSLGGAQSVSGETGTEFGDLWAWGAAESGKLGLGEDVASGSILTPQ 664
Query: 173 QVK-------------ELPQY--VYLVSVD---CGLFHTSVVSSAGDVWSWGM----EKG 210
+V E+ Y V+ VS G H+ +++ G+ ++WG G
Sbjct: 665 KVVFSVPVCACSLDSLEMQAYKRVFCVSFSPLCSGTSHSLAITAQGECYAWGAGYYGRLG 724
Query: 211 LGLCPNA-SLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
+G NA + TR + P G + + VA GA H++ ++ DG LW W
Sbjct: 725 IGTTANAYTPTRCDF-------------PKGVRLRS---VAAGACHSLALSMDG-DLWFW 767
Query: 270 GRGRSGVLGTGKTIDFFAPAIVL 292
GR T T ++ +P I +
Sbjct: 768 GRRED----TCSTTNYMSPRIFM 786
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 132/333 (39%), Gaps = 84/333 (25%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF------TPSPVWDFHGH 57
I V AG S ID G L+ WG+ GGF + P V F G
Sbjct: 306 IVFVNAGDSHSACIDRQGVLYTWGS---------GGFGRLGHGDQGEIPVPRKVEGFGGV 356
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKI-IETFNQ 116
V++VACG+ H +AL T+KG ++WGA LG G+ E + +
Sbjct: 357 PVLQVACGTFHTLAL-----THKG---TVFAWGAGL--ALGFGEGEDGSGGMVAVPKHLS 406
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
D AV + G +H+A +T D+L +G+G + +LGHG Q+ P+ V +
Sbjct: 407 DIEAAVLNIAAGPYHSAAVT---VGGDLL-----VWGVGGSSRLGHGDQQNQPFPKYVAD 458
Query: 177 LPQYVY-------------------------------------LVSVDCGLFHTSVVSSA 199
L +Y L S++CG HT ++ A
Sbjct: 459 LRNRMYVSDLQSMLGVSRLKREYSDLDVLDVPGTSGTNQSSWTLQSLECGESHTIALTGA 518
Query: 200 GDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV-QVACGAAHTVL 258
G VW WG L L + D P+ + F P+ ++ACG+ H +
Sbjct: 519 GAVWVWGSNDDGQL----GLGEDVEEDQYEPVKLE-------CFSTPIRRIACGSKHCLA 567
Query: 259 VTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V G +++WG +G LG G F PA V
Sbjct: 568 VAQYG-DVFAWGANDNGQLGLGVVRPSFEPAAV 599
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 115/269 (42%), Gaps = 61/269 (22%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD--RESRLRPKIIETFN 115
T+ + CG H +AL AG + WG+N++GQLGLG+ E + P +E F+
Sbjct: 501 TLQSLECGESHTIALTGAG--------AVWVWGSNDDGQLGLGEDVEEDQYEPVKLECFS 552
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
+ + CGS H + + W G +NGQLG G + + P V
Sbjct: 553 T----PIRRIACGSKHCLAVAQYG------DVFAW--GANDNGQLGLGVVRPSFEPAAVT 600
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSA--------------GDVWSWGMEKG--LGLCPNASL 219
L Q V V CG +++ ++S GD+W+WG + LGL + +
Sbjct: 601 ALRQ---AVDVFCGDDYSACITSLGGAQSVSGETGTEFGDLWAWGAAESGKLGLGEDVA- 656
Query: 220 TRNEAGDAISPILISGNGP------HGPKFQDPVQVAC--------GAAHTVLVTDDGYK 265
+G ++P + + P + Q +V C G +H++ +T G +
Sbjct: 657 ----SGSILTPQKVVFSVPVCACSLDSLEMQAYKRVFCVSFSPLCSGTSHSLAITAQG-E 711
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
++WG G G LG G T + + P +P
Sbjct: 712 CYAWGAGYYGRLGIGTTANAYTPTRCDFP 740
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 120/295 (40%), Gaps = 48/295 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW----DFHGHT 58
+I + G +LA+ + GAL+ WG + G S+TP V+ G
Sbjct: 182 KIARISCGADHTLALSDEGALYAWG---VGSYGNLGQGDTSDSYTPVRVYLGSEAGSGKK 238
Query: 59 VVKVACGSEH----VVALVSAGETYK---GEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
V G VV SAG + D ++WG NG+LGLG L P ++
Sbjct: 239 KENVGVGKVRADPVVVTCCSAGAKHSMACTSDGTLWTWGHGGNGRLGLGHNRGSLSPAVV 298
Query: 112 E-TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALV 170
+ ++D + V G H+A + + + +T+G G G+LGHG V
Sbjct: 299 DYILDRD----IVFVNAGDSHSACIDR--------QGVLYTWGSGGFGRLGHGDQGEIPV 346
Query: 171 PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP 230
P +V+ V ++ V CG FHT ++ G V++WG LG E D
Sbjct: 347 PRKVEGFGG-VPVLQVACGTFHTLALTHKGTVFAWGAGLALGF--------GEGEDG--- 394
Query: 231 ILISGNGPHGPKFQDPVQ-----VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
SG PK ++ +A G H+ VT G L WG G S LG G
Sbjct: 395 ---SGGMVAVPKHLSDIEAAVLNIAAGPYHSAAVTVGG-DLLVWGVGGSSRLGHG 445
>gi|334330728|ref|XP_001378629.2| PREDICTED: RCC1 and BTB domain-containing protein 1 [Monodelphis
domestica]
Length = 531
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 94/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED + Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 92 EDGMVYAWGHNGYSQLGNGTTNQGIAP--IQVCTNLLIKQVIEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +VS+ CG + V G+
Sbjct: 145 ---ADGEVYAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVSIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P ++ H +Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPCRVA--ALHSVCV---LQIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKSNLLSPAQIM 280
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 93/212 (43%), Gaps = 25/212 (11%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD-FHGHTV 59
+ Q+ V G S+A+ G ++ WG + G S + TP V + H V
Sbjct: 127 IKQVIEVACGSHHSMALAADGEVYAWG---YNNCGQVGSGSTANQPTPRKVTNCLHIKRV 183
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACG +A++ GE Y WG N NGQLGLG+ ++L P + +
Sbjct: 184 VSIACGQTSSMAVLDNGEVY--------GWGYNGNGQLGLGNNGNQLTPCRVAALHS--- 232
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V ++ CG HT LT E + + +G GQLG G + L P Q+ +
Sbjct: 233 VCVLQIVCGYAHTLALTD--------EGLLYAWGANTYGQLGTGNKSNLLSPAQIMVEKE 284
Query: 180 YVYLVSVDCGLFHTSVV-SSAGDVWSWGMEKG 210
V ++ C HTS + G V+ WG +G
Sbjct: 285 RVVEIAA-CHSAHTSAAKTQGGHVYMWGQCRG 315
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 122/310 (39%), Gaps = 47/310 (15%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + V++VACGS H +AL + GE
Sbjct: 94 GMVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLI-----KQVIEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
Y +WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 VY--------AWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKRVVSIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V ++ + CG HT ++
Sbjct: 193 SMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPCRVAAL-HSVCVLQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTV 257
G +++WG T + G L+S K + AC +AHT
Sbjct: 250 DEGLLYAWGAN-----------TYGQLGTGNKSNLLSPAQIMVEKERVVEIAACHSAHTS 298
Query: 258 LVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNTG 308
G ++ WG RG+S +L T FA V W L+ E +
Sbjct: 299 AAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACFATPAVTWRLLSVEHEDFLTVAE 358
Query: 309 GLDDEIKTKD 318
L E + D
Sbjct: 359 SLKKEFDSPD 368
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS +VP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNCSNCLGTGDNQSTIVPKKLEALCGKKIKSLSYGSGP-HVLLSTEDGMVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+PI + N + ++VACG+ H++ + DG ++++
Sbjct: 103 G------YSQLGNGTTNQGIAPIQVCTN----LLIKQVIEVACGSHHSMALAADG-EVYA 151
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 152 WGYNNCGQVGSGSTANQPTP 171
>gi|224105957|ref|XP_002313993.1| predicted protein [Populus trichocarpa]
gi|222850401|gb|EEE87948.1| predicted protein [Populus trichocarpa]
Length = 1104
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 131/290 (45%), Gaps = 30/290 (10%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ +G L+ WG+ + G + VS + P V G V ++CG
Sbjct: 367 VACGEYHTCAVTLSGDLYTWGDGTY-NFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCG 425
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ +++G G LG GDR+S PK +E+ +
Sbjct: 426 PWHTAVVTSAGQ--------LFTFGDGTFGVLGHGDRKSISLPKEVESLKG---LRTVQA 474
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ G+LGHG ++ LVP V L +
Sbjct: 475 ACGVWHTAAVIEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPN 534
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG T +++G V++ G P N D P + G
Sbjct: 535 F-CQVACGHSLTVARTTSGHVYTMG-------SPVYGQLGNPLADGKLPTRVEGK--LSK 584
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F + ++ACGA H ++T ++++WG+G +G LG G T D +P++V
Sbjct: 585 SFVE--EIACGAYHVAVLTSK-TEVYTWGKGANGRLGHGDTDDRNSPSLV 631
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 109/248 (43%), Gaps = 47/248 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +ACG +H + GE + SWG + G+LG G + PK+I+ + +
Sbjct: 312 VQNIACGGQHAALVTKQGEIF--------SWGEESGGRLGHGVDSDVMHPKLIDALSNTN 363
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKE 176
+ V CG +HT +T L +T+G G G LGHG S VP++V
Sbjct: 364 ---IELVACGEYHTCAVT--------LSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNG 412
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILIS 234
+ +++ S+ CG +HT+VV+SAG ++++ G LG S++ + +++ +
Sbjct: 413 PLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSISLPKEVESLKGLRT- 471
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGKTI 283
VQ ACG HT V + KL++WG G G LG G
Sbjct: 472 ------------VQAACGVWHTAAVIEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKE 519
Query: 284 DFFAPAIV 291
P V
Sbjct: 520 AKLVPTCV 527
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 31/180 (17%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80
G L+ WG+ D G + P+ V +VACG VA ++G Y
Sbjct: 500 GKLFTWGD---GDKGRLGHGDKEAKLVPTCVAALVEPNFCQVACGHSLTVARTTSGHVY- 555
Query: 81 GEDLVCYSWGANNNGQLGL----GDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLT 136
+ G+ GQLG G +R+ K+ ++F V E+ CG++H A+LT
Sbjct: 556 -------TMGSPVYGQLGNPLADGKLPTRVEGKLSKSF-------VEEIACGAYHVAVLT 601
Query: 137 HRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
+ + +T+G G NG+LGHG T P V+ L + S+ CG T+ +
Sbjct: 602 SK--------TEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDK-QVKSIACGTSFTAAI 652
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 36/158 (22%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN-------CPLPD----SSTEGGFSLVSSFTPSPV 51
C V G +++A +G ++ G+ PL D + EG S SF
Sbjct: 534 NFCQVACGHSLTVARTTSGHVYTMGSPVYGQLGNPLADGKLPTRVEGKLS--KSF----- 586
Query: 52 WDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
V ++ACG+ HV L S E Y +WG NG+LG GD + R P ++
Sbjct: 587 -------VEEIACGAYHVAVLTSKTEVY--------TWGKGANGRLGHGDTDDRNSPSLV 631
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
E V + CG+ TA + K + + +SMC
Sbjct: 632 EALKDKQ---VKSIACGTSFTAAICLHKWVSGVDQSMC 666
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 19/136 (13%)
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLT 220
G +L P+ + E + + ++ CG H ++V+ G+++SWG E G LG ++ +
Sbjct: 293 GVKMDSLFPKAL-ESAVVLDVQNIACGGQHAALVTKQGEIFSWGEESGGRLGHGVDSDVM 351
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLG 278
+ DA+S I VACG HT VT G L++WG G G+LG
Sbjct: 352 HPKLIDALSNTNIE-------------LVACGEYHTCAVTLSG-DLYTWGDGTYNFGLLG 397
Query: 279 TGKTIDFFAPAIVLWP 294
G + + P V P
Sbjct: 398 HGNEVSHWVPKRVNGP 413
>gi|10047261|dbj|BAB13419.1| KIAA1593 protein [Homo sapiens]
Length = 953
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 34 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GTDCKKQTSPQLLKSLLGIPFMQV 91
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ S V
Sbjct: 92 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIV 141
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
Y + CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 142 Y-ICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSI- 191
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HTS V S+G ++S+ GL N L + SP + GN
Sbjct: 192 VTEIACGRQHTSAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 240
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 40/238 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQD 117
+V+VACG H +AL A E + WG N GQLGLG D + + P+++++
Sbjct: 35 IVQVACGYYHSLALSKASEVF--------CWGQNKYGQLGLGTDCKKQTSPQLLKSL-LG 85
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P+ +V G H+ +LT L + +G + GQLG VP +K L
Sbjct: 86 IPFM--QVAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL 135
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 136 -RSQKIVYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKV---- 184
Query: 238 PHGPKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F+ ++ACG HT +++S+G G +G LGTG T + +P V
Sbjct: 185 -----FELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 237
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ +V V CG +H+ +S A +V+ WG K L + + + +L G
Sbjct: 33 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLL-------G 85
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F +QVA G AH+ ++T G ++ WGR + G LG D + P ++
Sbjct: 86 IPF---MQVAAGGAHSFVLTLSG-AIFGWGRNKFGQLGLNDENDRYVPNLL 132
>gi|194221881|ref|XP_001489975.2| PREDICTED: RCC1 and BTB domain-containing protein 1 [Equus
caballus]
Length = 531
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGIAP--IQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLSPAHIM 280
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 129/322 (40%), Gaps = 54/322 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLI-----KQVVEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
++WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 V--------FAWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKRVVGIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV-ACGAAHT 256
G +++WG L + +SP I + + V++ AC +AHT
Sbjct: 250 DEGLLYAWGANT------YGQLGTGNKNNLLSPAHIM------VEKERVVEIAACHSAHT 297
Query: 257 VLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNT 307
G ++ WG RG+S +L T FA V W L+ E +D L
Sbjct: 298 SAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACFASPAVSWRLLSVE-HEDFLTV 356
Query: 308 GGLDDEIKTKDLEGAEERDEKL 329
E K+ + E D K
Sbjct: 357 A----ESLKKEFDSPETADLKF 374
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS L+P++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSNCLGTGDNQSTLIPKKLEALCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+PI + N + V+VACG+ H++ + DG ++++
Sbjct: 103 G------YSQLGNGTTNQGIAPIQVCTN----LLIKQVVEVACGSHHSMALAADG-EVFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 152 WGYNNCGQVGSGSTANQPTP 171
>gi|298710216|emb|CBJ26291.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1089
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 116/256 (45%), Gaps = 32/256 (12%)
Query: 44 SSFTPSPVWDFHGHT--VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD 101
SSF P V T + +V CG EH AL S G+ +G GQLG+G+
Sbjct: 29 SSFLPCRVAFQLAPTQRIAEVFCGYEHTFALTSDGDVL--------GFGNGVKGQLGIGN 80
Query: 102 RESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
+S P+ + S V ++ G H+ LT D+ + FG +GQLG
Sbjct: 81 TDSHSNPQRVHLL---SGKGVVKMAAGLEHSLALTES---GDL-----YAFGDNLSGQLG 129
Query: 162 --HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
H T P++V L + + + CG HT+V++S+G+++ +G + L
Sbjct: 130 LGHNFTAKEQTPQKVPPLGR-AKITQLACGQDHTAVLTSSGELFMFGNNRDGALGVAGHA 188
Query: 220 TRNEAGDAISPILISG-NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
A +P L++G G H VQ+ CG HTV +T G ++ WG G LG
Sbjct: 189 NEGPPIVASAPQLVTGLKGKH------VVQIGCGLQHTVALTAAG-GVYCWGENGRGQLG 241
Query: 279 TGKTIDFFAPAIVLWP 294
TG T + + P++V P
Sbjct: 242 TGDTQNRYTPSLVCKP 257
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 109/246 (44%), Gaps = 39/246 (15%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR- 102
S P V G VVK+A G EH +AL +G+ Y++G N +GQLGLG
Sbjct: 83 SHSNPQRVHLLSGKGVVKMAAGLEHSLALTESGDL--------YAFGDNLSGQLGLGHNF 134
Query: 103 -ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
P+ + + + ++ CG HTA+LT + FG +G LG
Sbjct: 135 TAKEQTPQKVPPLGR---AKITQLACGQDHTAVLTS--------SGELFMFGNNRDGALG 183
Query: 162 HGTTQSALVPEQVKELPQYV------YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCP 215
+ P V PQ V ++V + CGL HT +++AG V+ WG E G G
Sbjct: 184 V-AGHANEGPPIVASAPQLVTGLKGKHVVQIGCGLQHTVALTAAGGVYCWG-ENGRG--- 238
Query: 216 NASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSG 275
L + + +P L+ F+ + VACG HT+ VTD ++ +G R G
Sbjct: 239 --QLGTGDTQNRYTPSLVC---KPLSAFK-CIHVACGGQHTIAVTDCD-DVYGFGSDRHG 291
Query: 276 VLGTGK 281
LG G+
Sbjct: 292 QLGLGR 297
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 91/217 (41%), Gaps = 36/217 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT-----PSPVWDFHGHT 58
+ + AG SLA+ +G L+ +G+ + G L +FT P V
Sbjct: 98 VVKMAAGLEHSLALTESGDLYAFGD------NLSGQLGLGHNFTAKEQTPQKVPPLGRAK 151
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD- 117
+ ++ACG +H L S+GE + +G N +G LG+ + P I+ + Q
Sbjct: 152 ITQLACGQDHTAVLTSSGELFM--------FGNNRDGALGVAGHANE-GPPIVASAPQLV 202
Query: 118 ---SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENG--QLGHGTTQSALVPE 172
V ++ CG HT LT CW GENG QLG G TQ+ P
Sbjct: 203 TGLKGKHVVQIGCGLQHTVALTAAG------GVYCW----GENGRGQLGTGDTQNRYTPS 252
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
V + + V CG HT V+ DV+ +G ++
Sbjct: 253 LVCKPLSAFKCIHVACGGQHTIAVTDCDDVYGFGSDR 289
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 18/155 (11%)
Query: 146 ESMCWTFGLGENGQLGHGT-TQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVW 203
S+ W G GQLG+GT TQS+ +P +V +L + V CG HT ++S GDV
Sbjct: 7 RSLVWAVGGNSKGQLGNGTPTQSSFLPCRVAFQLAPTQRIAEVFCGYEHTFALTSDGDVL 66
Query: 204 SW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+ G++ LG+ S + + L+SG G V++A G H++ +T+
Sbjct: 67 GFGNGVKGQLGIGNTDSHSNPQ-----RVHLLSGKG--------VVKMAAGLEHSLALTE 113
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPL 296
G L+++G SG LG G PPL
Sbjct: 114 SG-DLYAFGDNLSGQLGLGHNFTAKEQTPQKVPPL 147
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 12/101 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD-FHGHTVVK 61
+ + G ++A+ AG ++ WG G + +TPS V +
Sbjct: 209 HVVQIGCGLQHTVALTAAGGVYCWGE---NGRGQLGTGDTQNRYTPSLVCKPLSAFKCIH 265
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
VACG +H +A+ + Y +G++ +GQLGLG R
Sbjct: 266 VACGGQHTIAVTDCDDVY--------GFGSDRHGQLGLGRR 298
>gi|222629908|gb|EEE62040.1| hypothetical protein OsJ_16822 [Oryza sativa Japonica Group]
Length = 841
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 123/290 (42%), Gaps = 44/290 (15%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSS------FTPSPVWDFHGHTVVKVACGSEHVVA 71
D+ G +++WG +S G +++ S P P+ V V CG H
Sbjct: 32 DSLGDVYVWGEVFCENSVRVGSDTIIRSTEKTDFLLPKPLESRLVLDVYHVDCGVRHAAL 91
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
+ G+ + +WG ++ G+LG G RE + P+++E+ + V V CG FH
Sbjct: 92 VTRNGDVF--------TWGEDSGGRLGHGTREDSVHPRLVESL---AACNVDFVACGEFH 140
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF 191
T +T E W G G LGHGT +P+++ + + V CG +
Sbjct: 141 TCAVT------TTGELYTWGDGTHNVGLLGHGTDAGHWIPKRISGALDGLPVAYVSCGTW 194
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
HT++++S G ++++G + G+ + +LT + +SG + VAC
Sbjct: 195 HTALITSMGQLFTFG-DGSFGVLGHGNLTSISCPKEVES--LSG--------LKTIAVAC 243
Query: 252 GAAHT-----VLVTDDGY-----KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G HT V+VT KL++WG G LG G P V
Sbjct: 244 GVWHTAAIVEVIVTHSSSSVSAGKLFTWGDGDKHRLGHGDKESRLKPTCV 293
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 128/298 (42%), Gaps = 47/298 (15%)
Query: 7 VKAGGMMSLAIDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
V G + A+ G L+ WG N L T+ G + + + G V V
Sbjct: 134 VACGEFHTCAVTTTGELYTWGDGTHNVGLLGHGTDAGHWIPKRISGA----LDGLPVAYV 189
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+CG+ H + S G+ + ++G + G LG G+ S PK +E+ S
Sbjct: 190 SCGTWHTALITSMGQLF--------TFGDGSFGVLGHGNLTSISCPKEVESL---SGLKT 238
Query: 123 YEVTCGSFHTA-----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V CG +HTA ++TH + + +T+G G+ +LGHG +S L P V L
Sbjct: 239 IAVACGVWHTAAIVEVIVTHSS--SSVSAGKLFTWGDGDKHRLGHGDKESRLKPTCVASL 296
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISG 235
Y + V CG T ++++G V S G + LG N D P L+
Sbjct: 297 IDYDFY-RVACGHSLTVCLTTSGKVLSMGNSVYGQLG---------NPNSDGRLPCLVED 346
Query: 236 N--GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G H +QVACG+ H ++T ++++WG+G +G LG G D P V
Sbjct: 347 RIAGEH------VLQVACGSYHVAVLTGRS-EVFTWGKGANGRLGHGDIEDRKVPTQV 397
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 106/259 (40%), Gaps = 29/259 (11%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V G + I + G L+ +G+ G +L S P V G + VA
Sbjct: 186 VAYVSCGTWHTALITSMGQLFTFGDGSF---GVLGHGNLTSISCPKEVESLSGLKTIAVA 242
Query: 64 CGSEHVVALVSAGETYKGEDLVC---YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
CG H A+V T+ + ++WG + +LG GD+ESRL+P + + +
Sbjct: 243 CGVWHTAAIVEVIVTHSSSSVSAGKLFTWGDGDKHRLGHGDKESRLKPTCVASLID---Y 299
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
Y V CG T LT + G GQLG+ + L P V++
Sbjct: 300 DFYRVACGHSLTVCLT--------TSGKVLSMGNSVYGQLGNPNSDGRL-PCLVEDRIAG 350
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+++ V CG +H +V++ +V++WG KG N L + D P +
Sbjct: 351 EHVLQVACGSYHVAVLTGRSEVFTWG--KG----ANGRLGHGDIEDRKVPTQVE-----A 399
Query: 241 PKFQDPVQVACGAAHTVLV 259
K + +ACGA T +
Sbjct: 400 LKDRAVRHIACGANFTAAI 418
>gi|237835825|ref|XP_002367210.1| regulator of chromosome condensation domain-containing protein
[Toxoplasma gondii ME49]
gi|211964874|gb|EEB00070.1| regulator of chromosome condensation domain-containing protein
[Toxoplasma gondii ME49]
gi|221506115|gb|EEE31750.1| regulator of chromosome condensation domain-containing protein,
putative [Toxoplasma gondii VEG]
Length = 1205
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 123/275 (44%), Gaps = 56/275 (20%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIE 112
F +V +VA G H + + KG+ + WG N + LG+G + R+ P ++
Sbjct: 43 FGPASVKRVALGLYHTLVV-----GLKGDQPQLFGWGKNYSNVLGMGVEIRERVFPGLVP 97
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHR-KRPNDMLESMCWTFGLGENGQLGHGTTQSALV- 170
F S +EV+CG+ ++A+L R ++P + +TFGLG G+LG+ ++ V
Sbjct: 98 FF---SKMGTFEVSCGTNNSAVLVKRAQQPGGKV----YTFGLGNRGRLGYPKNKADGVA 150
Query: 171 --------------PEQVKELPQYVY------LVSVDCGLFHTSVVSSAGDVWSWGMEKG 210
P P V + + CG HT +S G +++WG+
Sbjct: 151 GYQGDFSGDGQEDGPSWFTPKPSRVRFRDKCKIARISCGADHTLALSDEGALYAWGVGS- 209
Query: 211 LGLCPNASLTRNEAGDAISPILI-----SGNGPH------GPKFQDPVQVAC---GAAHT 256
+L + + D+ +P+ + +G+G G DPV V C GA H+
Sbjct: 210 -----YGNLGQGDTSDSYTPVRVYLGSEAGSGKKKENVGVGKVRADPVIVTCCSAGAKHS 264
Query: 257 VLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ T DG LW+WG G +G LG G +PA+V
Sbjct: 265 MACTSDG-TLWTWGHGGNGRLGLGHNRGSLSPAVV 298
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 139/323 (43%), Gaps = 76/323 (23%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL---VSSFTPSPV-WDFHGHTVVK 61
S++ G ++A+ AGA+W+WG S+ +G L V PV + + +
Sbjct: 504 SLECGESHTIALTGAGAVWVWG------SNDDGQLGLGEDVEEDQYEPVKLECFSTPIRR 557
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ACGS+H +A+ G+ + +WGAN+NGQLGLG P + Q
Sbjct: 558 IACGSKHCLAVAQYGDVF--------AWGANDNGQLGLGVVRPSFEPAAVTALRQ----- 604
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESM------CWTFGLGENGQLGHG---TTQSALVPE 172
+V CG ++A +T + W +G E+G+LG G + S L P+
Sbjct: 605 AVDVFCGDDYSACITSLGGAQSVSGETGTEFGDLWAWGAAESGKLGLGEDVASGSILTPQ 664
Query: 173 QVK-------------ELPQY--VYLVSVD---CGLFHTSVVSSAGDVWSWGM----EKG 210
+V E+ Y V+ VS G H+ +++ G+ ++WG G
Sbjct: 665 KVVFSVPVCACSLDSLEMQAYKRVFCVSFSPLCSGTSHSLAITAQGECYAWGAGYYGRLG 724
Query: 211 LGLCPNA-SLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
+G NA + TR + P G + + VA GA H++ ++ DG LW W
Sbjct: 725 IGTTANAYTPTRCDF-------------PKGVRLRS---VAAGACHSLALSMDG-DLWFW 767
Query: 270 GRGRSGVLGTGKTIDFFAPAIVL 292
GR T T ++ +P I +
Sbjct: 768 GRRED----TCSTTNYMSPRIFM 786
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 132/333 (39%), Gaps = 84/333 (25%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF------TPSPVWDFHGH 57
I V AG S ID G L+ WG+ GGF + P V F G
Sbjct: 306 IVFVNAGDSHSACIDRQGVLYTWGS---------GGFGRLGHGDQGEIPVPRKVEGFGGV 356
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKI-IETFNQ 116
V++VACG+ H +AL T+KG ++WGA LG G+ E + +
Sbjct: 357 PVLQVACGTFHTLAL-----THKG---TVFAWGAGL--ALGFGEGEDGSGGMVAVPKHLS 406
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
D AV + G +H+A +T D+L +G+G + +LGHG Q+ P+ V +
Sbjct: 407 DIEAAVLNIAAGPYHSAAVT---VGGDLL-----VWGVGGSSRLGHGDQQNQPFPKYVAD 458
Query: 177 LPQYVY-------------------------------------LVSVDCGLFHTSVVSSA 199
L +Y L S++CG HT ++ A
Sbjct: 459 LRNRMYVSDLQSMLGVSRLKREYSDLDVLDVPGTSGTNQSSWTLQSLECGESHTIALTGA 518
Query: 200 GDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV-QVACGAAHTVL 258
G VW WG L L + D P+ + F P+ ++ACG+ H +
Sbjct: 519 GAVWVWGSNDDGQL----GLGEDVEEDQYEPVKLE-------CFSTPIRRIACGSKHCLA 567
Query: 259 VTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V G +++WG +G LG G F PA V
Sbjct: 568 VAQYG-DVFAWGANDNGQLGLGVVRPSFEPAAV 599
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 115/269 (42%), Gaps = 61/269 (22%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD--RESRLRPKIIETFN 115
T+ + CG H +AL AG + WG+N++GQLGLG+ E + P +E F+
Sbjct: 501 TLQSLECGESHTIALTGAG--------AVWVWGSNDDGQLGLGEDVEEDQYEPVKLECFS 552
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
+ + CGS H + + W G +NGQLG G + + P V
Sbjct: 553 T----PIRRIACGSKHCLAVAQYG------DVFAW--GANDNGQLGLGVVRPSFEPAAVT 600
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSA--------------GDVWSWGMEKG--LGLCPNASL 219
L Q V V CG +++ ++S GD+W+WG + LGL + +
Sbjct: 601 ALRQ---AVDVFCGDDYSACITSLGGAQSVSGETGTEFGDLWAWGAAESGKLGLGEDVA- 656
Query: 220 TRNEAGDAISPILISGNGP------HGPKFQDPVQVAC--------GAAHTVLVTDDGYK 265
+G ++P + + P + Q +V C G +H++ +T G +
Sbjct: 657 ----SGSILTPQKVVFSVPVCACSLDSLEMQAYKRVFCVSFSPLCSGTSHSLAITAQG-E 711
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
++WG G G LG G T + + P +P
Sbjct: 712 CYAWGAGYYGRLGIGTTANAYTPTRCDFP 740
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 120/295 (40%), Gaps = 48/295 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW----DFHGHT 58
+I + G +LA+ + GAL+ WG + G S+TP V+ G
Sbjct: 182 KIARISCGADHTLALSDEGALYAWG---VGSYGNLGQGDTSDSYTPVRVYLGSEAGSGKK 238
Query: 59 VVKVACGSEH----VVALVSAGETYK---GEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
V G +V SAG + D ++WG NG+LGLG L P ++
Sbjct: 239 KENVGVGKVRADPVIVTCCSAGAKHSMACTSDGTLWTWGHGGNGRLGLGHNRGSLSPAVV 298
Query: 112 E-TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALV 170
+ ++D + V G H+A + + + +T+G G G+LGHG V
Sbjct: 299 DYILDRD----IVFVNAGDSHSACIDR--------QGVLYTWGSGGFGRLGHGDQGEIPV 346
Query: 171 PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP 230
P +V+ V ++ V CG FHT ++ G V++WG LG E D
Sbjct: 347 PRKVEGFGG-VPVLQVACGTFHTLALTHKGTVFAWGAGLALGF--------GEGEDG--- 394
Query: 231 ILISGNGPHGPKFQDPVQ-----VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
SG PK ++ +A G H+ VT G L WG G S LG G
Sbjct: 395 ---SGGMVAVPKHLSDIEAAVLNIAAGPYHSAAVTVGG-DLLVWGVGGSSRLGHG 445
>gi|359477742|ref|XP_002281342.2| PREDICTED: uncharacterized protein LOC100254552 [Vitis vinifera]
Length = 1082
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 40/294 (13%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTVVKVACG 65
V G + A+ +G L+ WG+ ++ G + VS + P V G V+ VACG
Sbjct: 324 VACGEYHTCAVSTSGDLFTWGDG-THNAGLLGHGTEVSHWIPKRVSGPLEGLQVLSVACG 382
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
+ H S G+ +++G G LG GDRES P+ ++ S +V
Sbjct: 383 TWHSALATSNGK--------LFTFGDGTFGVLGHGDRESVPYPREVQIL---SGLKTIKV 431
Query: 126 TCGSFHTALLTH--RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CG +HTA + + ++ +T+G G+ +LGHG+ ++ L+P V L Y +
Sbjct: 432 ACGVWHTAAIIEVMSQSGTNISSRKLFTWGDGDKHRLGHGSKETYLLPTCVSALIDYNFH 491
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+ CG T ++++G V++ G L N D P L+
Sbjct: 492 -QLACGHTMTVALTTSGHVFTMGGTAYGQLG-------NPLSDGRLPCLV---------- 533
Query: 244 QDPV------QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
QD + +++CGA H ++T ++++WGRG +G LG G T D +P V
Sbjct: 534 QDKLVGEFVEEISCGAYHVAVLTSRS-EVFTWGRGANGRLGHGDTEDRRSPTFV 586
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 123/288 (42%), Gaps = 41/288 (14%)
Query: 17 IDNAGALWMWGNC----PLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVAL 72
I++ G +++WG LPD S + TP + V ++ACG HV +
Sbjct: 223 IESLGDVYVWGEVWCDGVLPDGSVSPFPIKIDVLTPKSLESNVVLDVHQIACGVRHVALV 282
Query: 73 VSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHT 132
GE + +WG + G+LG G RP ++E ++ V V CG +HT
Sbjct: 283 TRQGEVF--------TWGEESGGRLGHGIDNDFSRPHLVEFLAVNN---VDFVACGEYHT 331
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFH 192
++ D+ W G G LGHGT S +P++V + + ++SV CG +H
Sbjct: 332 CAVSTS---GDLF---TWGDGTHNAGLLGHGTEVSHWIPKRVSGPLEGLQVLSVACGTWH 385
Query: 193 TSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACG 252
+++ +S G ++++G + G+ + R ++SG ++VACG
Sbjct: 386 SALATSNGKLFTFG-DGTFGVLGHGD--RESVPYPREVQILSG--------LKTIKVACG 434
Query: 253 AAHTVLVTD---------DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT + + KL++WG G LG G + P V
Sbjct: 435 VWHTAAIIEVMSQSGTNISSRKLFTWGDGDKHRLGHGSKETYLLPTCV 482
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 31/178 (17%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
L+ WG+ D G S + P+ V + ++ACG VAL ++G +
Sbjct: 457 LFTWGDG---DKHRLGHGSKETYLLPTCVSALIDYNFHQLACGHTMTVALTTSGHVF--- 510
Query: 83 DLVCYSWGANNNGQLGLGDRESRL----RPKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
+ G GQLG + RL + K++ F V E++CG++H A+LT R
Sbjct: 511 -----TMGGTAYGQLGNPLSDGRLPCLVQDKLVGEF-------VEEISCGAYHVAVLTSR 558
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
S +T+G G NG+LGHG T+ P V+ L + S+ CG T+ +
Sbjct: 559 --------SEVFTWGRGANGRLGHGDTEDRRSPTFVEALKDR-NVKSISCGSNFTASI 607
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 10 GGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD-FHGHTVVKVACGSEH 68
G M++A+ +G ++ G + + G L P V D G V +++CG+ H
Sbjct: 496 GHTMTVALTTSGHVFTMGGT----AYGQLGNPLSDGRLPCLVQDKLVGEFVEEISCGAYH 551
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
V L S E + +WG NG+LG GD E R P +E + V ++CG
Sbjct: 552 VAVLTSRSEVF--------TWGRGANGRLGHGDTEDRRSPTFVEALKDRN---VKSISCG 600
Query: 129 SFHTALLTHRKRPNDMLESMC 149
S TA + K + +S+C
Sbjct: 601 SNFTASICIHKWVSGADQSVC 621
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
+ CG+ H ++V+ G+V++WG E G L D P L+ + F
Sbjct: 272 IACGVRHVALVTRQGEVFTWGEESG------GRLGHGIDNDFSRPHLVEFLAVNNVDF-- 323
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTGKTIDFFAPAIVLWP 294
VACG HT V+ G L++WG G +G+LG G + + P V P
Sbjct: 324 ---VACGEYHTCAVSTSG-DLFTWGDGTHNAGLLGHGTEVSHWIPKRVSGP 370
>gi|242089177|ref|XP_002440421.1| hypothetical protein SORBIDRAFT_09g000710 [Sorghum bicolor]
gi|241945706|gb|EES18851.1| hypothetical protein SORBIDRAFT_09g000710 [Sorghum bicolor]
Length = 916
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 124/292 (42%), Gaps = 46/292 (15%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSS------FTPSPVWDFHGHTVVKVACGSEHVVA 71
D+ G +++WG S G +++SS P P+ V V CG +H
Sbjct: 32 DSLGDVYVWGEVVCDTSVRTGSDTVISSTGRTDILLPKPLESNLVLDVYHVDCGVKHAAL 91
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
++ GE + +WG ++ G+LG G RE +RP+++E+ + V V CG FH
Sbjct: 92 VMKNGEVF--------TWGEDSGGRLGHGTREDCVRPRLVESLTVSN---VDFVACGEFH 140
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF 191
T +T E W G G LGHG +P++V + + + V CG +
Sbjct: 141 TCAVT------TTGELYSWGDGTHNVGLLGHGNDVGHWIPKRVSGALEGLQVAYVSCGTW 194
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
HT++++S G ++++G + G+ + L + +SG + VAC
Sbjct: 195 HTALITSMGQLFTFG-DGSFGVLGHGDLKSVSYPREVES--LSG--------LKTIAVAC 243
Query: 252 GAAHT-----VLVTDDGY-------KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G HT V+VT KL++WG G LG G P V
Sbjct: 244 GVWHTAAIVEVIVTRSSSSVKLSAGKLFTWGDGDKHRLGHGDKETRLKPTCV 295
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 106/263 (40%), Gaps = 33/263 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
Q+ V G + I + G L+ +G+ G L S P V G + V
Sbjct: 185 QVAYVSCGTWHTALITSMGQLFTFGDGSF---GVLGHGDLKSVSYPREVESLSGLKTIAV 241
Query: 63 ACGSEHVVALVSAGETYKGEDLVC-----YSWGANNNGQLGLGDRESRLRPKIIETF-NQ 116
ACG H A+V T + ++WG + +LG GD+E+RL+P + T +
Sbjct: 242 ACGVWHTAAIVEVIVTRSSSSVKLSAGKLFTWGDGDKHRLGHGDKETRLKPTCVATLIDH 301
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
D Y V CG T LT + G GQLG+ + +P V++
Sbjct: 302 D----FYRVACGHSLTVALT--------TSGQVLSMGNAVYGQLGNPHSD-GRIPCLVED 348
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
++ + CG +H +V++ +V++WG KG N L + D P L+
Sbjct: 349 KIVGEQVIQIACGSYHVAVLTGRNEVFTWG--KG----ANGRLGHGDIEDRKVPTLVEVL 402
Query: 237 GPHGPKFQDPVQVACGAAHTVLV 259
++ +ACGA T +
Sbjct: 403 KDRAVRY-----IACGANFTAAI 420
>gi|157849730|gb|ABV89648.1| UVB-resistance 8 [Brassica rapa]
Length = 432
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 136/336 (40%), Gaps = 80/336 (23%)
Query: 3 QICSVKAGGMMSLAIDNAG---ALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
QI SV G ++A + W WG D G + FTP P+ HG +
Sbjct: 64 QIVSVTCGADHTVAYSQSRLEVYSWGWG-----DFGRLGHGNSSDLFTPLPIKALHGVMI 118
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++ACG H +A+ GE SWG N NGQLGLG+ E L P+ I+ F
Sbjct: 119 KQIACGDSHCLAVTMDGEVQ--------SWGRNQNGQLGLGNTEDSLVPQKIQAFEGIR- 169
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDML--ESMCWTFGLGE-NGQLG--------HGTTQSA 168
+ V G+ HTA +T D+ + W FG+ + N +L +
Sbjct: 170 --IKMVAAGAEHTAAVT---EDGDLYGWDGKIWKFGISDRNDRLFLKEYLCCVRDVDGAV 224
Query: 169 LVPEQVKELPQYVYL-------------------------------VSVDCGLFHTSVVS 197
+ P L +YL + G HT ++
Sbjct: 225 MQPHISFLLWSIIYLWMEQIWPTRTWRLGGSPCFLTNWKRSATAFFSQISGGWRHTMPLT 284
Query: 198 SAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
S G ++ WG K +G+ N D SP+ + P Q VQV+CG H
Sbjct: 285 SDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV-----RFPDDQKVVQVSCGWRH 331
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
T+ VT+ +++WGRG +G LG G+++D +P I+
Sbjct: 332 TLAVTERN-NVFAWGRGTNGQLGIGESLDRNSPNII 366
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 101/223 (45%), Gaps = 37/223 (16%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
TP P V+ ++ G+ H VAL+S ++VC SWG +GQLG GD E R
Sbjct: 7 TPPP------RKVLIISAGASHSVALLSG-------EVVC-SWGRGEDGQLGHGDAEDRS 52
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P + ++ + VTCG+ HT + + LE W G G+ G+LGHG +
Sbjct: 53 SPTQLSALDEHQ---IVSVTCGADHTVAYSQSR-----LEVYSW--GWGDFGRLGHGNSS 102
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD 226
P +K L V + + CG H V+ G+V SWG + N L D
Sbjct: 103 DLFTPLPIKAL-HGVMIKQIACGDSHCLAVTMDGEVQSWGRNQ------NGQLGLGNTED 155
Query: 227 AISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
++ P I G + + VA GA HT VT+DG L+ W
Sbjct: 156 SLVPQKIQAF--EGIRIK---MVAAGAEHTAAVTEDG-DLYGW 192
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 24/172 (13%)
Query: 119 PWAVYEVTCGSFHT-ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P V ++ G+ H+ ALL+ E +C ++G GE+GQLGHG + P Q+ L
Sbjct: 10 PRKVLIISAGASHSVALLSG--------EVVC-SWGRGEDGQLGHGDAEDRSSPTQLSAL 60
Query: 178 PQYVYLVSVDCGLFHTSVVS-SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
++ +VSV CG HT S S +V+SWG L + D +P+ I
Sbjct: 61 DEH-QIVSVTCGADHTVAYSQSRLEVYSWGWGD------FGRLGHGNSSDLFTPLPI--K 111
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
HG + Q+ACG +H + VT DG ++ SWGR ++G LG G T D P
Sbjct: 112 ALHGVMIK---QIACGDSHCLAVTMDG-EVQSWGRNQNGQLGLGNTEDSLVP 159
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
+V P+ V ++S G H+ + S V SWG + + L +A D SP
Sbjct: 5 EVTPPPRKVLIISA--GASHSVALLSGEVVCSWGRGE------DGQLGHGDAEDRSSPTQ 56
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+S H V V CGA HTV + +++SWG G G LG G + D F P
Sbjct: 57 LSALDEH-----QIVSVTCGADHTVAYSQSRLEVYSWGWGDFGRLGHGNSSDLFTP 107
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+++ G H + L S G+ Y WG N GQ+G+G+ + P + F D
Sbjct: 272 QISGGWRHTMPLTSDGK--------LYGWGWNKFGQVGVGNNLDQCSPVQVR-FPDDQ-- 320
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V +V+CG HT +T R + +G G NGQLG G + P ++ L
Sbjct: 321 KVVQVSCGWRHTLAVTERNN--------VFAWGRGTNGQLGIGESLDRNSPNIIEAL 369
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV+V+CG H +A+ E ++WG NGQLG+G+ R P IIE + D
Sbjct: 322 VVQVSCGWRHTLAVT--------ERNNVFAWGRGTNGQLGIGESLDRNSPNIIEALSVD 372
>gi|410947356|ref|XP_003980415.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Felis catus]
Length = 531
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGIAP--IQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTTNQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLSPAHIM 280
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 129/322 (40%), Gaps = 54/322 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLI-----KQVVEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
++WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 V--------FAWGYNNCGQVGSGSTTNQPTPRKVT--NCLHIKRVVGIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV-ACGAAHT 256
G +++WG L + +SP I + + V++ AC +AHT
Sbjct: 250 DEGLLYAWGANT------YGQLGTGNKNNLLSPAHIM------VEKERVVEIAACHSAHT 297
Query: 257 VLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNT 307
G ++ WG RG+S +L T FA V W L+ E +D L
Sbjct: 298 SAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACFATPAVSWRLLSVE-HEDFLTV 356
Query: 308 GGLDDEIKTKDLEGAEERDEKL 329
E K+ + E D K
Sbjct: 357 A----ESLKKEFDSPETADLKF 374
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSNCLGTGDNQSTLVPKKLEALCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+PI + N + V+VACG+ H++ + DG ++++
Sbjct: 103 G------YSQLGNGTTNQGIAPIQVCTN----LLIKQVVEVACGSHHSMALAADG-EVFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 152 WGYNNCGQVGSGSTTNQPTP 171
>gi|357128620|ref|XP_003565969.1| PREDICTED: uncharacterized protein LOC100827763 [Brachypodium
distachyon]
Length = 1007
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 135/304 (44%), Gaps = 48/304 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF----SLVSSFTPSPVW-DFH 55
+S + + G + A+ +G L+ WG D S G S + P V
Sbjct: 305 VSNVEYIACGEFHTCAVTASGDLYNWG-----DGSYNAGLLGHGIGASHWLPKRVSGPLE 359
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G V+ VACGS H +S+G+ + ++G G LG G+RE+ PK +E+
Sbjct: 360 GLQVLSVACGSWHSALAMSSGKVF--------TFGDGTFGALGHGNRENVAYPKEVESL- 410
Query: 116 QDSPWAVYEVTCGSFHTALL--THRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
S + +V CG +H+A + T + +M+ +T+G G+ +LGHG ++ LVP
Sbjct: 411 --SGFRTMKVACGVWHSAAIVETTSQTGVNMVSRKLFTWGDGDKNRLGHGDKEARLVPTV 468
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
V+ L + V CG T ++++G V++ G N N D P +
Sbjct: 469 VQALVDNNFH-QVACGYSMTIALATSGHVFTMGSS-------NYGQLGNPKADGKQPCQV 520
Query: 234 SGNGPHGPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
QD + +++CG+ H ++T ++++WG G +G LG G D
Sbjct: 521 ----------QDKLSSELVEEISCGSYHVAVLTSRS-EVYTWGMGANGRLGHGGIEDKKK 569
Query: 288 PAIV 291
P IV
Sbjct: 570 PTIV 573
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 126/290 (43%), Gaps = 45/290 (15%)
Query: 17 IDNAGALWMWGNCPLPDSSTEGGFSLVSSFT----PSPVWDFHGHTVVKVACGSEHVVAL 72
I++ G +++WG +EG +LV S T P P+ V +++CGS H+
Sbjct: 210 IESLGDVYVWGEVWTDVIPSEGSSNLVCSKTDVLIPKPLESDVVLDVQQISCGSRHIALT 269
Query: 73 VSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHT 132
GE + +WG G+LG G E RPK++E+ + V + CG FHT
Sbjct: 270 TRQGEVF--------TWGEELGGRLGHGTDEDISRPKLVESLAVSN---VEYIACGEFHT 318
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFH 192
+T D+ W G G LGHG S +P++V + + ++SV CG +H
Sbjct: 319 CAVT---ASGDLYN---WGDGSYNAGLLGHGIGASHWLPKRVSGPLEGLQVLSVACGSWH 372
Query: 193 TSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
+++ S+G V+++ G LG ++ + +++S ++VA
Sbjct: 373 SALAMSSGKVFTFGDGTFGALGHGNRENVAYPKEVESLSGFRT-------------MKVA 419
Query: 251 CGAAHTVLVTDD---------GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
CG H+ + + KL++WG G LG G P +V
Sbjct: 420 CGVWHSAAIVETTSQTGVNMVSRKLFTWGDGDKNRLGHGDKEARLVPTVV 469
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+ CG H ++ + G+V++WG E G LG + ++R P L+ ++
Sbjct: 259 ISCGSRHIALTTRQGEVFTWGEELGGRLGHGTDEDISR--------PKLVESLAVSNVEY 310
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTGKTIDFFAPAIVLWP 294
+ACG HT VT G L++WG G +G+LG G + P V P
Sbjct: 311 -----IACGEFHTCAVTASG-DLYNWGDGSYNAGLLGHGIGASHWLPKRVSGP 357
>gi|73988984|ref|XP_542558.2| PREDICTED: RCC1 and BTB domain-containing protein 1 isoform 1
[Canis lupus familiaris]
Length = 531
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGIAP--IQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTTNQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLSPAHIM 280
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 129/322 (40%), Gaps = 54/322 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLI-----KQVVEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
++WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 V--------FAWGYNNCGQVGSGSTTNQPTPRKVT--NCLHIKRVVGIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV-ACGAAHT 256
G +++WG L + +SP I + + V++ AC +AHT
Sbjct: 250 DEGLLYAWGANT------YGQLGTGNKNNLLSPAHIM------VEKERVVEIAACHSAHT 297
Query: 257 VLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNT 307
G ++ WG RG+S VL T FA V W L+ E +D L
Sbjct: 298 SAAKTQGGHVYMWGQCRGQSVVLPHLTHFSCTDDVFACFATPAVSWRLLSVE-HEDFLTV 356
Query: 308 GGLDDEIKTKDLEGAEERDEKL 329
E K+ + E D K
Sbjct: 357 A----ESLKKEFDSPETADLKF 374
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSNCLGTGDNQSTLVPKKLEALCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+PI + N + V+VACG+ H++ + DG ++++
Sbjct: 103 G------YSQLGNGTTNQGIAPIQVCTN----LLIKQVVEVACGSHHSMALAADG-EVFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 152 WGYNNCGQVGSGSTTNQPTP 171
>gi|375267564|emb|CCD28232.1| regulator of chromosome condensation, partial [Plasmopara viticola]
Length = 287
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 112/235 (47%), Gaps = 24/235 (10%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV V+CGS H +AL ++G Y SWG + GQLG GD +S P+ + F Q+
Sbjct: 48 VVAVSCGSRHTMALAASGAVY--------SWGWGSMGQLGHGDLKSVNIPQKVVFFEQNG 99
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
Y ++CG H+A +T ES GL + + H +S V + E
Sbjct: 100 LKVNY-ISCGGCHSAAVTKDGTLYMWGESHWGQLGLPKEHEAAH---ESLPVECPMPEGL 155
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI----SPILIS 234
+V V CG HT+ +++ G V+ WG L ++ N +++ P L+
Sbjct: 156 TKECIVKVSCGGTHTAALTNHGRVYIWGRGDSGQLGIGSTWFNNTEDESLLRTSRPQLLD 215
Query: 235 G-NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
G NG + VQVACGA H+ VT+ GY ++ W + G+LG G++ D P
Sbjct: 216 GFNG------ERVVQVACGAFHSAAVTEKGY-VYIWXKEDYGMLGIGQSSDXQNP 263
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 98/208 (47%), Gaps = 32/208 (15%)
Query: 88 SWGANNNGQLGLGDRESRLR----------PKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
++G N++GQLG G + + P+ I+ + V V+CGS HT L
Sbjct: 7 TFGCNDDGQLGTGAKRRPMLAIDGVSAANFPQNIDGLQDEE---VVAVSCGSRHTMALA- 62
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS-VDCGLFHTSVV 196
+++G G GQLGHG +S +P++V Q V+ + CG H++ V
Sbjct: 63 -------ASGAVYSWGWGSMGQLGHGDLKSVNIPQKVVFFEQNGLKVNYISCGGCHSAAV 115
Query: 197 SSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAA 254
+ G ++ WG LGL P +E+ P+ P G + V+V+CG
Sbjct: 116 TKDGTLYMWGESHWGQLGL-PKEHEAAHESLPVECPM------PEGLTKECIVKVSCGGT 168
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
HT +T+ G +++ WGRG SG LG G T
Sbjct: 169 HTAALTNHG-RVYIWGRGDSGQLGIGST 195
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 49/228 (21%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDF--HGHTVV 60
++ +V G ++A+ +GA++ WG + G L S P V F +G V
Sbjct: 47 EVVAVSCGSRHTMALAASGAVYSWGWGSM---GQLGHGDLKSVNIPQKVVFFEQNGLKVN 103
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++CG H A+ +D Y WG ++ GQLGL PK E ++ P
Sbjct: 104 YISCGGCHSAAVT--------KDGTLYMWGESHWGQLGL--------PKEHEAAHESLPV 147
Query: 121 -----------AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT---- 165
+ +V+CG HTA LT+ R + +G G++GQLG G+T
Sbjct: 148 ECPMPEGLTKECIVKVSCGGTHTAALTNHGR--------VYIWGRGDSGQLGIGSTWFNN 199
Query: 166 ---QSALVPEQVKELPQY--VYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+S L + + L + +V V CG FH++ V+ G V+ W E
Sbjct: 200 TEDESLLRTSRPQLLDGFNGERVVQVACGAFHSAAVTEKGYVYIWXKE 247
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 21/124 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG----------GFSLVSSFTPSPVWD 53
I V GG + A+ N G +++WG DS G SL+ + P +
Sbjct: 160 IVKVSCGGTHTAALTNHGRVYIWGR---GDSGQLGIGSTWFNNTEDESLLRTSRPQLLDG 216
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
F+G VV+VACG+ H A+ G Y W + G LG+G PK +
Sbjct: 217 FNGERVVQVACGAFHSAAVTEKGYVYI--------WXKEDYGMLGIGQSSDXQNPKSASS 268
Query: 114 FNQD 117
F D
Sbjct: 269 FFDD 272
>gi|444731984|gb|ELW72311.1| RCC1 and BTB domain-containing protein 1 [Tupaia chinensis]
Length = 531
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGIAP--IQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLSPAHIM 280
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 129/322 (40%), Gaps = 54/322 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLI-----KQVVEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
++WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 V--------FAWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKRVVGIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV-ACGAAHT 256
G +++WG L + +SP I + + V++ AC +AHT
Sbjct: 250 DEGLLYAWGANT------YGQLGTGNKNNLLSPAHIM------VEKERVVEIAACHSAHT 297
Query: 257 VLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNT 307
G ++ WG RG+S +L T FA V W L+ E +D L
Sbjct: 298 SAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACFATPAVTWRLLSVE-HEDFLTV 356
Query: 308 GGLDDEIKTKDLEGAEERDEKL 329
E K+ + E D K
Sbjct: 357 A----ESLKKEFDSPETADLKF 374
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSNCLGTGDNQSTLVPKKLEALCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+PI + N + V+VACG+ H++ + DG ++++
Sbjct: 103 G------YSQLGNGTTNQGIAPIQVCTN----LLIKQVVEVACGSHHSMALAADG-EVFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 152 WGYNNCGQVGSGSTANQPTP 171
>gi|403366107|gb|EJY82845.1| RCC1 repeat domain protein [Oxytricha trifallax]
Length = 2141
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 112/240 (46%), Gaps = 30/240 (12%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
F PS V ++KV+CG+ +AL G YSWG N+G LG G++
Sbjct: 241 FKPSIVKFDASIIIIKVSCGNSFTLALSQEGH--------VYSWGLGNSGGLGQGEQNVS 292
Query: 106 LRPKIIETFNQDSPWA-VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
+ P II+ + + ++ CGS H L H + + +++G G+ G+LGHG
Sbjct: 293 MTPNIIKYQKNGHLFQNIKDIACGSNHVLSLDH--------QGIVYSWGNGQGGRLGHGD 344
Query: 165 TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA 224
+P+++ L QY L+ ++ G ++ +S +++ W G+GL + L +
Sbjct: 345 ETGENIPKEIIGLRQYKILM-IEAGEGSSAAISIKNELFIW----GVGL--HGRLGTGKT 397
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
+ + P+++ K Q +A G+ H++ + +G K WG + G LG +D
Sbjct: 398 ANVLKPVMLE-----DLKDQKVEDIALGSNHSLCILRNG-KAMCWGSSKDGKLGLETALD 451
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 121/279 (43%), Gaps = 37/279 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGH---TV 59
I V G +LA+ G ++ WG L +S G S TP+ + + +GH +
Sbjct: 254 IIKVSCGNSFTLALSQEGHVYSWG---LGNSGGLGQGEQNVSMTPNIIKYQKNGHLFQNI 310
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ACGS HV++L G + YSWG G+LG GD PK I Q
Sbjct: 311 KDIACGSNHVLSLDHQG--------IVYSWGNGQGGRLGHGDETGENIPKEIIGLRQ--- 359
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ + + G +A ++ +++ + +G+G +G+LG G T + L P +++L
Sbjct: 360 YKILMIEAGEGSSAAIS--------IKNELFIWGVGLHGRLGTGKTANVLKPVMLEDLKD 411
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ + G H+ + G WG K L +L RN L
Sbjct: 412 QK-VEDIALGSNHSLCILRNGKAMCWGSSKDGKLGLETALDRNFTQPKELVTLDK----- 465
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
+ Q+A G H++ +T++G +++S+G + G LG
Sbjct: 466 ----EKLYQIAAGPFHSIALTENG-EIYSFGNSKDGKLG 499
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 39/223 (17%)
Query: 85 VCYSWGANNNGQLGLGDRESRL-------------RPKIIETFNQDSPWAVYEVTCGSFH 131
+ ++WG N G+LG+ E + +P I++ D+ + +V+CG+
Sbjct: 207 IVFTWGVVNEGRLGIALNEKEIENIEQKNNELIPFKPSIVKF---DASIIIIKVSCGNSF 263
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ---YVYLVSVDC 188
T L+ E +++GLG +G LG G ++ P +K + + + C
Sbjct: 264 TLALSQ--------EGHVYSWGLGNSGGLGQGEQNVSMTPNIIKYQKNGHLFQNIKDIAC 315
Query: 189 GLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ 248
G H + G V+SWG +G L +E G+ I +I G + +
Sbjct: 316 GSNHVLSLDHQGIVYSWGNGQGGRLGHG-----DETGENIPKEII------GLRQYKILM 364
Query: 249 VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ G + ++ +L+ WG G G LGTGKT + P ++
Sbjct: 365 IEAGEGSSAAISIKN-ELFIWGVGLHGRLGTGKTANVLKPVML 406
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 119/294 (40%), Gaps = 47/294 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G LA+ + GA + WG ++VS P+ + ++
Sbjct: 676 KIKHVSTGYFHVLAVTHEGATFGWGRNDNGQLGMGRKDTVVSK--PTRIKSLQDKVIIMT 733
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG--------DR--------ESRL 106
A G H + L GE ++C G N G+LG+G D+ +
Sbjct: 734 ASGESHSLFLSDLGE------VLC--SGFNEFGELGIGLNSTSGGADKKENPDEIYDENY 785
Query: 107 RPKIIETFNQDSPWAVYE------VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQL 160
+ ++IET + +P + + G H+ + KR ++ W G G +GQ
Sbjct: 786 QRQLIETKIELTPKIIKGLESIGFIAAGKNHSIAIRTYKRKEKAMKLFTW--GCGWHGQT 843
Query: 161 GHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
GHG+ Q+ +P+ VK + + + CG HT + + G +W +G + +G+
Sbjct: 844 GHGSWQNDYLPQIVKVPVLKDTKFIQASCGSKHTIALDTTGHIWFFGYKPSVGI------ 897
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRG 272
+ D + P K Q+P + ++ G H + VT G ++ +G+
Sbjct: 898 --EDFNDEKQFMPARLETP--SKIQEPFKFISSGEEHNLAVTQSGL-VYGFGKN 946
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 105/260 (40%), Gaps = 67/260 (25%)
Query: 48 PSPVWDFHGHTVVK---VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES 104
PSP+ +H +K V+ G HV+A+ G T+ WG N+NGQLG+G +++
Sbjct: 663 PSPLTIYHDAVQMKIKHVSTGYFHVLAVTHEGATF--------GWGRNDNGQLGMGRKDT 714
Query: 105 RL-RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
+ +P I++ QD + G H+ L+ D+ E +C G E G+LG G
Sbjct: 715 VVSKPTRIKSL-QDK--VIIMTASGESHSLFLS------DLGEVLCS--GFNEFGELGIG 763
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE 223
++ ++ KE P +Y + L T +
Sbjct: 764 LNSTSGGADK-KENPDEIYDENYQRQLIETKI---------------------------- 794
Query: 224 AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLV-----TDDGYKLWSWGRGRSGVLG 278
++P +I G G +A G H++ + + KL++WG G G G
Sbjct: 795 ---ELTPKIIKGLESIGF-------IAAGKNHSIAIRTYKRKEKAMKLFTWGCGWHGQTG 844
Query: 279 TGKTIDFFAPAIVLWPPLTE 298
G + + P IV P L +
Sbjct: 845 HGSWQNDYLPQIVKVPVLKD 864
>gi|395859036|ref|XP_003801852.1| PREDICTED: RCC1 and BTB domain-containing protein 1 isoform 1
[Otolemur garnettii]
Length = 531
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGIAP--IQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLSPAHIM 280
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 129/322 (40%), Gaps = 54/322 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLI-----KQVVEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
++WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 V--------FAWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKRVVGIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV-ACGAAHT 256
G +++WG L + +SP I + + V++ AC +AHT
Sbjct: 250 DEGLLYAWGANT------YGQLGTGNKNNLLSPAHIM------VEKERIVEIAACHSAHT 297
Query: 257 VLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNT 307
G ++ WG RG+S VL T FA V W L+ E +D L
Sbjct: 298 SAAKTQGGHVYMWGQCRGQSVVLPHLTHFSCTDDVFACFATPAVSWRLLSVE-HEDFLTV 356
Query: 308 GGLDDEIKTKDLEGAEERDEKL 329
E K+ + E D K
Sbjct: 357 A----ESLKKEFDSPETADLKF 374
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSNCLGTGDNQSTLVPKKLEALCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+PI + N + V+VACG+ H++ + DG ++++
Sbjct: 103 G------YSQLGNGTTNQGIAPIQVCTN----LLIKQVVEVACGSHHSMALAADG-EVFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 152 WGYNNCGQVGSGSTANQPTP 171
>gi|145593730|ref|YP_001158027.1| cell wall anchor domain-containing protein [Salinispora tropica
CNB-440]
gi|145303067|gb|ABP53649.1| LPXTG-motif cell wall anchor domain [Salinispora tropica CNB-440]
Length = 558
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 129/293 (44%), Gaps = 34/293 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I +V G SLA+ + G+L WG+ D+ G S+ SS TP V TV +
Sbjct: 140 RIVAVAVGADHSLALTSTGSLLAWGSN---DTGQLGDGSVTSSSTPVAVRLPPNTTVAAI 196
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G +H + L + G +WGAN GQLG G R RP + N + V
Sbjct: 197 AAGRDHNLVLTATGPA------ALLAWGANREGQLGDGTVVDRSRPVPV---NLPTGLTV 247
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ G H+ LT +D + + W G +GQLG GTT +L+P V LP
Sbjct: 248 TAIAGGRDHSLALTS----DDTV--LAW--GGNSHGQLGDGTTTGSLLPVTVV-LPVGAE 298
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
++ G H+ ++S G +WG G N S + D+ P+ +S P G +
Sbjct: 299 ATAIAAGRLHSLALTSDGTALAWGGNH-WGQLGNGSTS-----DSSEPVAVS--LPGGTR 350
Query: 243 FQDPVQVAC-GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
+ +A + H V +T +G L +WG G LG G T D P V P
Sbjct: 351 L---ISIASRDSDHNVAITTEGAAL-AWGLNSQGHLGDGTTTDSATPVAVSLP 399
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 122/296 (41%), Gaps = 39/296 (13%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF---SLVSSFTPSPVWDFHGHT 58
+ + +V AG S+A+ +AG + WG +TEG + SS P V G
Sbjct: 87 TTVAAVAAGDRHSVALTSAGTVLAWGR------NTEGQLGNGTTTSSGEPVAVSLPSGIR 140
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+V VA G++H +AL S G +WG+N+ GQLG G S P + +
Sbjct: 141 IVAVAVGADHSLALTSTGS--------LLAWGSNDTGQLGDGSVTSSSTPVAVRLPPNTT 192
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + G H +LT P +L +G GQLG GT P V LP
Sbjct: 193 ---VAAIAAGRDHNLVLT-ATGPAALLA-----WGANREGQLGDGTVVDRSRPVPVN-LP 242
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ + ++ G H+ ++S V +WG + L ++ P+ +
Sbjct: 243 TGLTVTAIAGGRDHSLALTSDDTVLAWGGNS------HGQLGDGTTTGSLLPVTVV---- 292
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
P + +A G H++ +T DG L +WG G LG G T D P V P
Sbjct: 293 -LPVGAEATAIAAGRLHSLALTSDGTAL-AWGGNHWGQLGNGSTSDSSEPVAVSLP 346
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 97/241 (40%), Gaps = 34/241 (14%)
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G TV VA G H VAL SAG +WG N GQLG G S P + +
Sbjct: 86 GTTVAAVAAGDRHSVALTSAG--------TVLAWGRNTEGQLGNGTTTSSGEPVAV---S 134
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
S + V G+ H+ LT + W G + GQLG G+ S+ P V+
Sbjct: 135 LPSGIRIVAVAVGADHSLALTSTG------SLLAW--GSNDTGQLGDGSVTSSSTPVAVR 186
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGD--VWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
LP + ++ G H V+++ G + +WG + L D P+ +
Sbjct: 187 -LPPNTTVAAIAAGRDHNLVLTATGPAALLAWGANR------EGQLGDGTVVDRSRPVPV 239
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
N P G +A G H++ +T D L +WG G LG G T P V+
Sbjct: 240 --NLPTGLTV---TAIAGGRDHSLALTSDDTVL-AWGGNSHGQLGDGTTTGSLLPVTVVL 293
Query: 294 P 294
P
Sbjct: 294 P 294
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 137 HRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
H+ ++ +G + GQLG GTT + P V+ LP + +V G H+ +
Sbjct: 44 HQPASAAVMSDAILAWGGNDGGQLGDGTTTDSSEPIAVR-LPTGTTVAAVAAGDRHSVAL 102
Query: 197 SSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAA 254
+SAG V +WG E LG + T +G+ ++ L P G + V VA GA
Sbjct: 103 TSAGTVLAWGRNTEGQLG-----NGTTTSSGEPVAVSL-----PSGIRI---VAVAVGAD 149
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
H++ +T G L +WG +G LG G P V PP T
Sbjct: 150 HSLALTSTG-SLLAWGSNDTGQLGDGSVTSSSTPVAVRLPPNT 191
>gi|410208768|gb|JAA01603.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 2 [Pan troglodytes]
gi|410264078|gb|JAA20005.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 2 [Pan troglodytes]
gi|410293804|gb|JAA25502.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 2 [Pan troglodytes]
gi|410338541|gb|JAA38217.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 2 [Pan troglodytes]
Length = 527
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P ++ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGIAP--VQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLSPAHIM 280
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 119/292 (40%), Gaps = 49/292 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + V T + VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLI-----KQVVEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
+ +WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 VF--------AWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKRVVGIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA-CGAAHT 256
G +++WG L + +SP I + + V++A C +AHT
Sbjct: 250 DEGLLYAWGANT------YGQLGTGNKNNLLSPAHIM------VEKERVVEIAACHSAHT 297
Query: 257 VLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEE 299
G ++ WG RG+S +L T FA V W L+ E
Sbjct: 298 SAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACFATPAVTWRLLSVE 349
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSNCLGTGDNQSTLVPKKLEGLCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+P+ + N + V+VACG+ H++ + DG ++++
Sbjct: 103 G------YSQLGNGTTNQGIAPVQVCTN----LLIKQVVEVACGSHHSMALAADG-EVFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 152 WGYNNCGQVGSGSTANQPTP 171
>gi|242055697|ref|XP_002456994.1| hypothetical protein SORBIDRAFT_03g046900 [Sorghum bicolor]
gi|241928969|gb|EES02114.1| hypothetical protein SORBIDRAFT_03g046900 [Sorghum bicolor]
Length = 870
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 134/298 (44%), Gaps = 39/298 (13%)
Query: 4 ICSV---KAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD-FHGHTV 59
IC+V G + A+ AG L+ WG+ + G + VS + P + GH V
Sbjct: 128 ICNVDIVACGEFHTCAVTTAGELYTWGD-GTHNIGLLGNGTDVSHWIPKRISGALEGHQV 186
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V+CG+ H + S G+ + ++G G LG G+RES P+ +E+ S
Sbjct: 187 AYVSCGTWHTALVTSRGQLF--------TFGDGTFGVLGHGNRESFSCPREVESL---SG 235
Query: 120 WAVYEVTCGSFHTALLTH---RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V CG +HTA + + + M +T+G G+ +LGHG + L P V
Sbjct: 236 LKTIAVACGVWHTAAVVEVIVTQSSSSMSSGKLFTWGDGDKHRLGHGDKEPRLKPTCVAS 295
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILIS 234
L Y + + CG T ++++G + S G + LG N D P L+
Sbjct: 296 LIDYDF-CRIACGHSLTVGLTTSGQILSMGNTVYGQLG---------NPRSDGKLPCLVE 345
Query: 235 G-NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G H VQVACG+ H ++T+ ++++WG+G +G LG G D P +V
Sbjct: 346 DIMGEH------VVQVACGSYHVAVLTNKS-EVFTWGKGANGRLGHGDIEDRKIPTLV 396
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 121/301 (40%), Gaps = 66/301 (21%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSS------FTPSPVWDFHGHTVVKVACGSEHVVA 71
D++G +++WG ++ G +++ S P P+ V V CG +H
Sbjct: 32 DSSGDVYVWGEVICDNTVRVGPDTVIRSTGKADFLLPKPLESKLVLDVYHVDCGVKHAAL 91
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
+ GE + +WG + G+LG G RE + P+++E+ + V V CG FH
Sbjct: 92 VTKNGEVF--------TWGEESGGRLGHGSREDSVHPRLVESL---AICNVDIVACGEFH 140
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF 191
T +T E W G G LG+GT S +P+++ + + V CG +
Sbjct: 141 TCAVT------TAGELYTWGDGTHNIGLLGNGTDVSHWIPKRISGALEGHQVAYVSCGTW 194
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP----- 246
HT++V+S G ++++ GD +L GN F P
Sbjct: 195 HTALVTSRGQLFTF-------------------GDGTFGVLGHGN---RESFSCPREVES 232
Query: 247 ------VQVACGAAHT-----VLVTDDGY-----KLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ VACG HT V+VT KL++WG G LG G P
Sbjct: 233 LSGLKTIAVACGVWHTAAVVEVIVTQSSSSMSSGKLFTWGDGDKHRLGHGDKEPRLKPTC 292
Query: 291 V 291
V
Sbjct: 293 V 293
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 75/192 (39%), Gaps = 38/192 (19%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNC---PLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
C + G +++ + +G + GN L + ++G P V D G VV
Sbjct: 301 FCRIACGHSLTVGLTTSGQILSMGNTVYGQLGNPRSDGKL-------PCLVEDIMGEHVV 353
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VACGS HV L + E ++WG NG+LG GD E R P ++E
Sbjct: 354 QVACGSYHVAVLTNKSEV--------FTWGKGANGRLGHGDIEDRKIPTLVEALRD---R 402
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWT----FGLGE-------------NGQLGHG 163
V + CGS T+ + K + +S C + FG N H
Sbjct: 403 GVRHIACGSNFTSAICQHKWVSGAEQSQCASCRQPFGFTRKRHNCHNCGLVHCNACTSHK 462
Query: 164 TTQSALVPEQVK 175
++AL P K
Sbjct: 463 VLRAALAPNPAK 474
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 26/189 (13%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80
G L+ WG+ D G P+ V + ++ACG V L ++G+
Sbjct: 266 GKLFTWGD---GDKHRLGHGDKEPRLKPTCVASLIDYDFCRIACGHSLTVGLTTSGQIL- 321
Query: 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKR 140
S G GQLG + +L P ++E + V +V CGS+H A+LT++
Sbjct: 322 -------SMGNTVYGQLGNPRSDGKL-PCLVEDIMGEH---VVQVACGSYHVAVLTNK-- 368
Query: 141 PNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAG 200
S +T+G G NG+LGHG + +P V+ L + + CG TS +
Sbjct: 369 ------SEVFTWGKGANGRLGHGDIEDRKIPTLVEALRDR-GVRHIACGSNFTSAICQ-- 419
Query: 201 DVWSWGMEK 209
W G E+
Sbjct: 420 HKWVSGAEQ 428
>gi|348682416|gb|EGZ22232.1| hypothetical protein PHYSODRAFT_330063 [Phytophthora sojae]
Length = 2101
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 43/243 (17%)
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+CG EH +A+ ++G DL + WG G+LG G+ S L P + +
Sbjct: 1810 SCGREHTMAVTASG------DLFGFGWG--EAGRLGTGETGSSLYPTRVTDLQN-----I 1856
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
V CG HT LT + R + FG G G+LG+G+ +P V+ L Y
Sbjct: 1857 AAVACGREHTLALTRKGR--------VFAFGAGFGGRLGNGSETDEELPFAVQGLEDY-R 1907
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI----SGNGP 238
+ ++D G H+ +S+ GDV +W G + +L + + + P I +GN
Sbjct: 1908 IAAIDAGECHSCALSTEGDVLTW------GFGSSGALGHGDRDNCLEPRRIEGPWTGNAI 1961
Query: 239 HGPKFQDP-----VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFF-APAIVL 292
G + Q +ACG+ HT+ T DG L+ WG +G L ++++ AP +V+
Sbjct: 1962 DGEENQASETSVVSAIACGSYHTLAATSDG-ALYGWGDAAAGQL----SVEYITAPEMVV 2016
Query: 293 WPP 295
P
Sbjct: 2017 LTP 2019
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 79/178 (44%), Gaps = 30/178 (16%)
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V ++ CG HTAL+T + +TFG GE G+LGHG + P V +
Sbjct: 1745 VVQIACGYRHTALITDDRH--------LYTFGHGECGRLGHGNQEDCTEPVSVGYFTSLI 1796
Query: 182 --------YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
+V V CG HT V+++GD++ G G L E G ++ P +
Sbjct: 1797 EAEGVDVGGVVEVSCGREHTMAVTASGDLF------GFGWGEAGRLGTGETGSSLYPTRV 1850
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ Q+ VACG HT+ +T G +++++G G G LG G D P V
Sbjct: 1851 T-------DLQNIAAVACGREHTLALTRKG-RVFAFGAGFGGRLGNGSETDEELPFAV 1900
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 108/278 (38%), Gaps = 53/278 (19%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ I +V G +LA+ G ++ +G G S P V + +
Sbjct: 1853 LQNIAAVACGREHTLALTRKGRVFAFGAG---FGGRLGNGSETDEELPFAVQGLEDYRIA 1909
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE-------- 112
+ G H AL + G+ +WG ++G LG GDR++ L P+ IE
Sbjct: 1910 AIDAGECHSCALSTEGD--------VLTWGFGSSGALGHGDRDNCLEPRRIEGPWTGNAI 1961
Query: 113 --TFNQDSPWAVYE-VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
NQ S +V + CGS+HT T + + +G GQL + +
Sbjct: 1962 DGEENQASETSVVSAIACGSYHTLAATS--------DGALYGWGDAAAGQL---SVEYIT 2010
Query: 170 VPEQVKELPQYVY------LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE 223
PE V PQ + + SV CG F ++V ++ G ++ WG P E
Sbjct: 2011 APEMVVLTPQRIRVPTNSGIRSVACGTFTSAVCTNQGHLFLWGSPAAGNGAP------LE 2064
Query: 224 AGDA-ISPILISGNGPHGPKFQDPVQVACGAAHTVLVT 260
DA + I + G QVACGA H V +T
Sbjct: 2065 VDDARVKRIGVLGEFEFS-------QVACGAYHAVAIT 2095
>gi|7939537|dbj|BAA95740.1| chromosome condensation regulator-like protein protein [Arabidopsis
thaliana]
Length = 1067
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 134/302 (44%), Gaps = 44/302 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTV 59
++ I V G + + +G L+ WG+ + + G S +S + P V G V
Sbjct: 311 LTNIDFVACGEYHTCVVSTSGDLFSWGDG-IHNVGLLGHGSDISHWIPKRVSGPLEGLQV 369
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ VACG+ H + G+ +++G G LG G+RES PK +++ N
Sbjct: 370 LSVACGTWHSALATANGK--------LFTFGDGAFGVLGHGNRESVSYPKEVQSLNG--- 418
Query: 120 WAVYEVTCGSFHTALLTHR--KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+V C +HTA + + M +T+G G+ +LGHG ++ L+P V L
Sbjct: 419 LKTVKVACSIWHTAAIVEVMGQTATSMSSRKLFTWGDGDKNRLGHGNKETYLLPTCVSSL 478
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISG 235
Y + + CG T ++++G V++ G LG N D P L+
Sbjct: 479 IDYNFH-KIACGHTFTVALTTSGHVFTMGGTAHGQLG---------NSISDGKLPCLV-- 526
Query: 236 NGPHGPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA 289
QD + ++ACGA H ++T ++++WG+G +G LG G T D P
Sbjct: 527 --------QDRLVGEFVEEIACGAHHVAVLTSRS-EVFTWGKGANGRLGHGDTEDKRTPT 577
Query: 290 IV 291
+V
Sbjct: 578 LV 579
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 126/295 (42%), Gaps = 41/295 (13%)
Query: 10 GGMMSLAIDNAGALWMWGNC----PLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
GG I++ G +++WG LPD + TP P+ V ++ CG
Sbjct: 209 GGSGPDDIESLGDVYVWGEVWTEGILPDGTASNETVKTDVLTPRPLESNVVLDVHQIVCG 268
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
HV + GE + +WG G+LG G + RPK++E + + V
Sbjct: 269 VRHVALVTRQGEVF--------TWGEEVGGRLGHGIQVDISRPKLVEFLALTN---IDFV 317
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CG +HT +++ D+ W G+ G LGHG+ S +P++V + + ++S
Sbjct: 318 ACGEYHTCVVS---TSGDLFS---WGDGIHNVGLLGHGSDISHWIPKRVSGPLEGLQVLS 371
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
V CG +H+++ ++ G ++++G + G+ + N + + S NG
Sbjct: 372 VACGTWHSALATANGKLFTFG-DGAFGVLGHG----NRESVSYPKEVQSLNG------LK 420
Query: 246 PVQVACGAAHTVLVTD---------DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V+VAC HT + + KL++WG G LG G + P V
Sbjct: 421 TVKVACSIWHTAAIVEVMGQTATSMSSRKLFTWGDGDKNRLGHGNKETYLLPTCV 475
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 31/178 (17%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
L+ WG+ D + G + + P+ V + K+ACG VAL ++G +
Sbjct: 450 LFTWGDG---DKNRLGHGNKETYLLPTCVSSLIDYNFHKIACGHTFTVALTTSGHVF--- 503
Query: 83 DLVCYSWGANNNGQLGLGDRESRL----RPKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
+ G +GQLG + +L + +++ F V E+ CG+ H A+LT R
Sbjct: 504 -----TMGGTAHGQLGNSISDGKLPCLVQDRLVGEF-------VEEIACGAHHVAVLTSR 551
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
S +T+G G NG+LGHG T+ P V+ L + ++ S+ CG TS +
Sbjct: 552 --------SEVFTWGKGANGRLGHGDTEDKRTPTLVEAL-RDRHVKSLSCGSNFTSSI 600
>gi|326923408|ref|XP_003207928.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
2 [Meleagris gallopavo]
Length = 1056
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 96/235 (40%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ ++ WG G+ +P + G ++
Sbjct: 138 QIVQVACGYYHSLALSKGSEVFSWGQNKYGQLGL--GYEYKKQNSPHVIKSLLGIPFAQI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDDNDRYVPTLLKSLRTQK---V 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 245 VHICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSL- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HT+ V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQITCGRQHTTAFVPSSGRIYSF------GLGGNGQLGTGTTSNRKSPFTVKGN 344
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 134/306 (43%), Gaps = 50/306 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG +T+G L + P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LATDGQLGLPGTEECIRVPRNIKSLSEIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL E + SWG N GQLGLG + + + P +I++
Sbjct: 140 VQVACGYYHSLALSKGSEVF--------SWGQNKYGQLGLGYEYKKQNSPHVIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+A ++ G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFA--QIAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDDNDRYVPTLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILISG 235
+ +V + CG HT+ ++ G V+++G G G L N I+P + G
Sbjct: 240 RTQKVVHICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKVFELMG 293
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL--W 293
+ Q+ CG HT +++S+G G +G LGTG T + +P V W
Sbjct: 294 SLV--------TQITCGRQHTTAFVPSSGRIYSFGLGGNGQLGTGTTSNRKSPFTVKGNW 345
Query: 294 PPLTEE 299
P + +
Sbjct: 346 LPYSTQ 351
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 100/250 (40%), Gaps = 64/250 (25%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTAL------------ 134
WG + GQLGLG D E L P+ + F + +V CG HT
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFLNKR---IRDVGCGLRHTVFVLDDGTVYTCGC 60
Query: 135 -----LTH---RKRP------------------------NDMLESMCWTFGLGENGQLG- 161
L H RKRP ND + W GL +GQLG
Sbjct: 61 NDLGQLGHEKARKRPEHVGALDAQNIVAVSCGEAHTLALNDKGQVYAW--GLATDGQLGL 118
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTR 221
GT + VP +K L + + +V V CG +H+ +S +V+SWG K L +
Sbjct: 119 PGTEECIRVPRNIKSLSE-IQIVQVACGYYHSLALSKGSEVFSWGQNKYGQLGLGYEYKK 177
Query: 222 NEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+ I +L G F Q+A G AH+ ++T G ++ WGR + G LG
Sbjct: 178 QNSPHVIKSLL-------GIPF---AQIAAGGAHSFVLTLSG-AIFGWGRNKFGQLGLND 226
Query: 282 TIDFFAPAIV 291
D + P ++
Sbjct: 227 DNDRYVPTLL 236
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFLNKRIRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L + R E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKARKRPEHVGALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLATDGQLG 117
>gi|118092565|ref|XP_001231234.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 [Gallus
gallus]
Length = 1056
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 96/235 (40%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ ++ WG G+ +P + G ++
Sbjct: 138 QIVQVACGYYHSLALSKGSEVFSWGQNKYGQLGL--GYEYKKQNSPHVIKSLLGIPFAQI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDDNDRYVPTLLKSLRTQK---V 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 245 VHICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSL- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HT+ V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQITCGRQHTTAFVPSSGRIYSF------GLGGNGQLGTGTTSNRKSPFTVKGN 344
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 134/308 (43%), Gaps = 50/308 (16%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGH 57
I +V G +LA+++ G ++ WG +T+G L + P +
Sbjct: 84 QNIVAVSCGEAHTLALNDKGQVYAWG------LATDGQLGLPGTEECIRVPRNIKSLSEI 137
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQ 116
+V+VACG H +AL E + SWG N GQLGLG + + + P +I++
Sbjct: 138 QIVQVACGYYHSLALSKGSEVF--------SWGQNKYGQLGLGYEYKKQNSPHVIKSL-L 188
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
P+A ++ G H+ +LT L + +G + GQLG VP +K
Sbjct: 189 GIPFA--QIAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDDNDRYVPTLLKS 238
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILI 233
L + +V + CG HT+ ++ G V+++G G G L N I+P +
Sbjct: 239 L-RTQKVVHICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKVFEL 291
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL- 292
G+ Q+ CG HT +++S+G G +G LGTG T + +P V
Sbjct: 292 MGSLV--------TQITCGRQHTTAFVPSSGRIYSFGLGGNGQLGTGTTSNRKSPFTVKG 343
Query: 293 -WPPLTEE 299
W P + +
Sbjct: 344 NWLPYSTQ 351
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 100/250 (40%), Gaps = 64/250 (25%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTAL------------ 134
WG + GQLGLG D E L P+ + F + +V CG HT
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFLNKR---IRDVGCGLRHTVFVLDDGTVYTCGC 60
Query: 135 -----LTH---RKRP------------------------NDMLESMCWTFGLGENGQLG- 161
L H RKRP ND + W GL +GQLG
Sbjct: 61 NDLGQLGHEKARKRPEHVGALDAQNIVAVSCGEAHTLALNDKGQVYAW--GLATDGQLGL 118
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTR 221
GT + VP +K L + + +V V CG +H+ +S +V+SWG K L +
Sbjct: 119 PGTEECIRVPRNIKSLSE-IQIVQVACGYYHSLALSKGSEVFSWGQNKYGQLGLGYEYKK 177
Query: 222 NEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+ I +L G F Q+A G AH+ ++T G ++ WGR + G LG
Sbjct: 178 QNSPHVIKSLL-------GIPF---AQIAAGGAHSFVLTLSG-AIFGWGRNKFGQLGLND 226
Query: 282 TIDFFAPAIV 291
D + P ++
Sbjct: 227 DNDRYVPTLL 236
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFLNKRIRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L + R E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKARKRPEHVGALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLATDGQLG 117
>gi|390338528|ref|XP_782246.3| PREDICTED: RCC1 and BTB domain-containing protein 1
[Strongylocentrotus purpuratus]
Length = 536
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 112/253 (44%), Gaps = 35/253 (13%)
Query: 42 LVSSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG 100
++SS TP + + +A GS HVVA GE Y SWG N QLG G
Sbjct: 63 VMSSLTPRKIEGLCKKGMFALAFGSGPHVVAATENGEIY--------SWGHNGYCQLGNG 114
Query: 101 DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQL 160
L P I T N S + ++ CGS H+ +LT R E W G GQ+
Sbjct: 115 TTNQGLLPHRI-TGNLGS-CKISQIACGSHHSLVLTDRG------EVFAW--GYNNCGQV 164
Query: 161 GHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNAS 218
G G T + P +V + +VS+ CG + V +G+V+ WG LGL N +
Sbjct: 165 GSGATANISTPRKVVSVLGGKRVVSIACGQTSSLAVVDSGEVYGWGYNGNGQLGLGNNVN 224
Query: 219 LTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
+++ ++IS Q ACG AH++ ++D+G +++WG G LG
Sbjct: 225 QPSPCKVSSLNGLIIS-------------QAACGYAHSMALSDEG-NIYTWGANSYGQLG 270
Query: 279 TGKTIDFFAPAIV 291
TG + A +
Sbjct: 271 TGNKANLCGAAKI 283
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 105/240 (43%), Gaps = 41/240 (17%)
Query: 60 VKVACGSEHVVALVSAGE--TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VK+AC SAG Y +D +++G N+N LGLGD S L P+ IE +
Sbjct: 25 VKLAC------VFGSAGNEAIYVTKDDEVFAFGNNHNACLGLGDVMSSLTPRKIEGLCKK 78
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENG--QLGHGTTQSALVPEQVK 175
+A+ +F + H + E W G NG QLG+GTT L+P ++
Sbjct: 79 GMFAL------AFGSG--PHVVAATENGEIYSW----GHNGYCQLGNGTTNQGLLPHRIT 126
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPI 231
+ + CG H+ V++ G+V++WG G G N S R
Sbjct: 127 GNLGSCKISQIACGSHHSLVLTDRGEVFAWGYNNCGQVGSGATANISTPRKVVS------ 180
Query: 232 LISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ G + V +ACG ++ V D G +++ WG +G LG G ++ +P V
Sbjct: 181 VLGG--------KRVVSIACGQTSSLAVVDSG-EVYGWGYNGNGQLGLGNNVNQPSPCKV 231
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 13/144 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQY-VYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FG N LG G S+L P +++ L + ++ ++ G H + G+++SWG
Sbjct: 48 FAFGNNHNACLGLGDVMSSLTPRKIEGLCKKGMFALAFGSGP-HVVAATENGEIYSWGHN 106
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
G C + T N+ + P I+GN Q+ACG+ H++++TD G ++++
Sbjct: 107 ---GYCQLGNGTTNQG---LLPHRITGN----LGSCKISQIACGSHHSLVLTDRG-EVFA 155
Query: 269 WGRGRSGVLGTGKTIDFFAPAIVL 292
WG G +G+G T + P V+
Sbjct: 156 WGYNNCGQVGSGATANISTPRKVV 179
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ S+ G SLA+ ++G ++ WG + G + V+ +P V +G + +
Sbjct: 186 RVVSIACGQTSSLAVVDSGEVYGWG---YNGNGQLGLGNNVNQPSPCKVSSLNGLIISQA 242
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES 104
ACG H +AL G Y +WGAN+ GQLG G++ +
Sbjct: 243 ACGYAHSMALSDEGNIY--------TWGANSYGQLGTGNKAN 276
>gi|326923406|ref|XP_003207927.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
1 [Meleagris gallopavo]
Length = 1048
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 96/235 (40%), Gaps = 29/235 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ ++ WG G+ +P + G ++
Sbjct: 138 QIVQVACGYYHSLALSKGSEVFSWGQNKYGQLGL--GYEYKKQNSPHVIKSLLGIPFAQI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
A G H L +G + WG N GQLGL D R P ++++ V
Sbjct: 196 AAGGAHSFVLTLSG--------AIFGWGRNKFGQLGLNDDNDRYVPTLLKSLRTQK---V 244
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ CG HTA LT E +TFG G GQLGH +T + P +V EL +
Sbjct: 245 VHICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSL- 295
Query: 183 LVSVDCGLFHTSV-VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + CG HT+ V S+G ++S+ GL N L + SP + GN
Sbjct: 296 VTQITCGRQHTTAFVPSSGRIYSF------GLGGNGQLGTGTTSNRKSPFTVKGN 344
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 134/306 (43%), Gaps = 50/306 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTV 59
I +V G +LA+++ G ++ WG +T+G L + P + +
Sbjct: 86 IVAVSCGEAHTLALNDKGQVYAWG------LATDGQLGLPGTEECIRVPRNIKSLSEIQI 139
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
V+VACG H +AL E + SWG N GQLGLG + + + P +I++
Sbjct: 140 VQVACGYYHSLALSKGSEVF--------SWGQNKYGQLGLGYEYKKQNSPHVIKSL-LGI 190
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P+A ++ G H+ +LT L + +G + GQLG VP +K L
Sbjct: 191 PFA--QIAAGGAHSFVLT--------LSGAIFGWGRNKFGQLGLNDDNDRYVPTLLKSL- 239
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILISG 235
+ +V + CG HT+ ++ G V+++G G G L N I+P + G
Sbjct: 240 RTQKVVHICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTSHEINPRKVFELMG 293
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL--W 293
+ Q+ CG HT +++S+G G +G LGTG T + +P V W
Sbjct: 294 SLV--------TQITCGRQHTTAFVPSSGRIYSFGLGGNGQLGTGTTSNRKSPFTVKGNW 345
Query: 294 PPLTEE 299
P + +
Sbjct: 346 LPYSTQ 351
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 100/250 (40%), Gaps = 64/250 (25%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTAL------------ 134
WG + GQLGLG D E L P+ + F + +V CG HT
Sbjct: 4 WGNASFGQLGLGGIDEEIVLEPRKSDFFLNKR---IRDVGCGLRHTVFVLDDGTVYTCGC 60
Query: 135 -----LTH---RKRP------------------------NDMLESMCWTFGLGENGQLG- 161
L H RKRP ND + W GL +GQLG
Sbjct: 61 NDLGQLGHEKARKRPEHVGALDAQNIVAVSCGEAHTLALNDKGQVYAW--GLATDGQLGL 118
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTR 221
GT + VP +K L + + +V V CG +H+ +S +V+SWG K L +
Sbjct: 119 PGTEECIRVPRNIKSLSE-IQIVQVACGYYHSLALSKGSEVFSWGQNKYGQLGLGYEYKK 177
Query: 222 NEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+ I +L G F Q+A G AH+ ++T G ++ WGR + G LG
Sbjct: 178 QNSPHVIKSLL-------GIPF---AQIAAGGAHSFVLTLSG-AIFGWGRNKFGQLGLND 226
Query: 282 TIDFFAPAIV 291
D + P ++
Sbjct: 227 DNDRYVPTLL 236
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+CW G GQLG G +V E K + + V CGL HT V G V++ G
Sbjct: 2 LCW--GNASFGQLGLGGIDEEIVLEPRKSDFFLNKRIRDVGCGLRHTVFVLDDGTVYTCG 59
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L + R E A+ Q+ V V+CG AHT+ + D G ++
Sbjct: 60 CNDLGQLGHEKARKRPEHVGALDA-------------QNIVAVSCGEAHTLALNDKG-QV 105
Query: 267 WSWGRGRSGVLG 278
++WG G LG
Sbjct: 106 YAWGLATDGQLG 117
>gi|15229409|ref|NP_188968.1| regulator of chromosome condensation-like protein with FYVE zinc
finger domain [Arabidopsis thaliana]
gi|332643224|gb|AEE76745.1| regulator of chromosome condensation-like protein with FYVE zinc
finger domain [Arabidopsis thaliana]
Length = 1045
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 134/302 (44%), Gaps = 44/302 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTV 59
++ I V G + + +G L+ WG+ + + G S +S + P V G V
Sbjct: 302 LTNIDFVACGEYHTCVVSTSGDLFSWGDG-IHNVGLLGHGSDISHWIPKRVSGPLEGLQV 360
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ VACG+ H + G+ +++G G LG G+RES PK +++ N
Sbjct: 361 LSVACGTWHSALATANGK--------LFTFGDGAFGVLGHGNRESVSYPKEVQSLNG--- 409
Query: 120 WAVYEVTCGSFHTALLTHR--KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+V C +HTA + + M +T+G G+ +LGHG ++ L+P V L
Sbjct: 410 LKTVKVACSIWHTAAIVEVMGQTATSMSSRKLFTWGDGDKNRLGHGNKETYLLPTCVSSL 469
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISG 235
Y + + CG T ++++G V++ G LG N D P L+
Sbjct: 470 IDYNFH-KIACGHTFTVALTTSGHVFTMGGTAHGQLG---------NSISDGKLPCLV-- 517
Query: 236 NGPHGPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA 289
QD + ++ACGA H ++T ++++WG+G +G LG G T D P
Sbjct: 518 --------QDRLVGEFVEEIACGAHHVAVLTSRS-EVFTWGKGANGRLGHGDTEDKRTPT 568
Query: 290 IV 291
+V
Sbjct: 569 LV 570
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 126/295 (42%), Gaps = 41/295 (13%)
Query: 10 GGMMSLAIDNAGALWMWGNC----PLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
GG I++ G +++WG LPD + TP P+ V ++ CG
Sbjct: 200 GGSGPDDIESLGDVYVWGEVWTEGILPDGTASNETVKTDVLTPRPLESNVVLDVHQIVCG 259
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
HV + GE + +WG G+LG G + RPK++E + + V
Sbjct: 260 VRHVALVTRQGEVF--------TWGEEVGGRLGHGIQVDISRPKLVEFLALTN---IDFV 308
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
CG +HT +++ D+ W G+ G LGHG+ S +P++V + + ++S
Sbjct: 309 ACGEYHTCVVS---TSGDLFS---WGDGIHNVGLLGHGSDISHWIPKRVSGPLEGLQVLS 362
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
V CG +H+++ ++ G ++++G + G+ + N + + S NG
Sbjct: 363 VACGTWHSALATANGKLFTFG-DGAFGVLGHG----NRESVSYPKEVQSLNG------LK 411
Query: 246 PVQVACGAAHTVLVTD---------DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V+VAC HT + + KL++WG G LG G + P V
Sbjct: 412 TVKVACSIWHTAAIVEVMGQTATSMSSRKLFTWGDGDKNRLGHGNKETYLLPTCV 466
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 31/178 (17%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
L+ WG+ D + G + + P+ V + K+ACG VAL ++G +
Sbjct: 441 LFTWGDG---DKNRLGHGNKETYLLPTCVSSLIDYNFHKIACGHTFTVALTTSGHVF--- 494
Query: 83 DLVCYSWGANNNGQLGLGDRESRL----RPKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
+ G +GQLG + +L + +++ F V E+ CG+ H A+LT R
Sbjct: 495 -----TMGGTAHGQLGNSISDGKLPCLVQDRLVGEF-------VEEIACGAHHVAVLTSR 542
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
S +T+G G NG+LGHG T+ P V+ L + ++ S+ CG TS +
Sbjct: 543 --------SEVFTWGKGANGRLGHGDTEDKRTPTLVEAL-RDRHVKSLSCGSNFTSSI 591
>gi|307193259|gb|EFN76150.1| Probable E3 ubiquitin-protein ligase HERC4 [Harpegnathos saltator]
Length = 1054
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 111/256 (43%), Gaps = 38/256 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHTV 59
I + G S+A+ N G L+ WG S+++G L S P V +
Sbjct: 139 IVQIACGLKHSIALTNNGELYAWG------SNSDGQLGLGSDTKMELKPKLVHSLAAVPI 192
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
VACG H + + +G ++WG N GQLGL D ++R P + T
Sbjct: 193 AFVACGGYHTIVISKSG--------AVFAWGRNTFGQLGLSDIQNRNVPCQLRTLRNSR- 243
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V CG + LT ++ +T G G GQLGHG S ++P Q+ EL
Sbjct: 244 --VCYAACGEEFSVFLT--------MDGGVFTCGAGMYGQLGHGNKTSEILPRQIMELMG 293
Query: 180 YVYLVSVDCGLFHT-SVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISP---I 231
+ + CG HT ++V S G V++WG+ + G + N++ + G +SP
Sbjct: 294 ST-VTQISCGRRHTLALVPSRGRVYAWGLGGAGQLGNRIAQNSTTPQVVFGPWVSPSGSS 352
Query: 232 LISGNGPHGPKFQDPV 247
+I+ + PK D V
Sbjct: 353 MINHDSHDSPKPTDCV 368
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/339 (24%), Positives = 137/339 (40%), Gaps = 74/339 (21%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGG---FSLVSSFTPSPVWDFHGHT 58
++I + G ++A+ G ++ GN E G L+S P
Sbjct: 34 NEIEQIACGDNYTIAVTKEGQVYSCGNNDHGQLGQEKGRKRLQLISGIDPL--------A 85
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQD 117
K ACGS H + + G+ +SWG+N GQLGL + +R P++++T
Sbjct: 86 FRKAACGSSHTLVVNEWGQ--------LFSWGSNVEGQLGLDRVSATIREPRMVKTLGTK 137
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-TQSALVPEQVKE 176
+ ++ CG H+ LT+ + +G +GQLG G+ T+ L P+ V
Sbjct: 138 ---IIVQIACGLKHSIALTNNGE--------LYAWGSNSDGQLGLGSDTKMELKPKLVHS 186
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCP--------------NASLT 220
L V + V CG +HT V+S +G V++WG LGL N+ +
Sbjct: 187 LAA-VPIAFVACGGYHTIVISKSGAVFAWGRNTFGQLGLSDIQNRNVPCQLRTLRNSRVC 245
Query: 221 RNEAGDAISPIL------------ISGNGPHGPKFQDPV-------------QVACGAAH 255
G+ S L + G HG K + + Q++CG H
Sbjct: 246 YAACGEEFSVFLTMDGGVFTCGAGMYGQLGHGNKTSEILPRQIMELMGSTVTQISCGRRH 305
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
T+ + ++++WG G +G LG + P +V P
Sbjct: 306 TLALVPSRGRVYAWGLGGAGQLGNRIAQNSTTPQVVFGP 344
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 111/244 (45%), Gaps = 38/244 (15%)
Query: 38 GGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQL 97
GG + FTP V + + ++ACG + +A+ G+ YS G N++GQ
Sbjct: 15 GGIEDENIFTPREVNFEKANEIEQIACGDNYTIAVTKEGQV--------YSCGNNDHGQ- 65
Query: 98 GLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN 157
LG + R R ++I + P A + CGS HT ++ N+ + W G
Sbjct: 66 -LGQEKGRKRLQLISGID---PLAFRKAACGSSHTLVV------NEWGQLFSW--GSNVE 113
Query: 158 GQLGHGTTQSALV-PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLC 214
GQLG + + P VK L + +V + CGL H+ +++ G++++WG LGL
Sbjct: 114 GQLGLDRVSATIREPRMVKTLGTKI-IVQIACGLKHSIALTNNGELYAWGSNSDGQLGLG 172
Query: 215 PNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRS 274
+ + + P L+ F VACG HT++++ G +++WGR
Sbjct: 173 SDTKM-------ELKPKLVHSLAAVPIAF-----VACGGYHTIVISKSG-AVFAWGRNTF 219
Query: 275 GVLG 278
G LG
Sbjct: 220 GQLG 223
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 31/198 (15%)
Query: 87 YSWGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDM 144
+ WG+ +G+LGLG + E+ P+ + N + + ++ CG +T +T
Sbjct: 2 FCWGSTIHGELGLGGIEDENIFTPREV---NFEKANEIEQIACGDNYTIAVTK------- 51
Query: 145 LESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
E ++ G ++GQLG + L Q+ + CG HT VV+ G ++S
Sbjct: 52 -EGQVYSCGNNDHGQLGQEKGRKRL---QLISGIDPLAFRKAACGSSHTLVVNEWGQLFS 107
Query: 205 WG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG +E LGL ++ R P ++ G + VQ+ACG H++ +T++
Sbjct: 108 WGSNVEGQLGLDRVSATIR-------EPRMVKTLGT-----KIIVQIACGLKHSIALTNN 155
Query: 263 GYKLWSWGRGRSGVLGTG 280
G +L++WG G LG G
Sbjct: 156 G-ELYAWGSNSDGQLGLG 172
>gi|78190492|ref|NP_001030025.1| X-linked retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 113/235 (48%), Gaps = 37/235 (15%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+ V V ACG H + G Y + G NN GQLGLGD E R
Sbjct: 78 PTCVKALKPEKVKLAACGRNHTLVSTEGGNVY--------ATGGNNEGQLGLGDTEERNT 129
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
+I F S + +++ GS +A LT R + +G GQ+G +
Sbjct: 130 FHVISFFT--SEHKIKQLSAGSNTSAALTEDGR--------LFMWGDNSEGQIGLKNVSN 179
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAG 225
VP+QV + + V +S CG +H++ V++ G+++ +G E G LGL PN L G
Sbjct: 180 VCVPQQVT-IGKPVSWIS--CGYYHSAFVTTDGELYVFGEPENGKLGL-PNQLL-----G 230
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ +P L+S + +QVACG HTV++T++ ++++G G+ G LG G
Sbjct: 231 NHRTPQLVS------EIPEKVIQVACGGEHTVVLTENA--VYTFGLGQFGQLGLG 277
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 126/291 (43%), Gaps = 52/291 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ S + G + + +N G L L D+ F ++S FT H + +++
Sbjct: 100 LVSTEGGNVYATGGNNEGQLG------LGDTEERNTFHVISFFTSE-------HKIKQLS 146
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS AL ED + WG N+ GQ+GL + + P+ + T + W
Sbjct: 147 AGSNTSAALT--------EDGRLFMWGDNSEGQIGLKNVSNVCVPQQV-TIGKPVSW--- 194
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG--HGTTQSALVPEQVKELPQYV 181
++CG +H+A +T + + FG ENG+LG + + P+ V E+P+ V
Sbjct: 195 -ISCGYYHSAFVT--------TDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSEIPEKV 245
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG HT VV + V+++G+ + L L I I
Sbjct: 246 --IQVACGGEHT-VVLTENAVYTFGLGQFGQLGLGTFLFETSEPKVIENI---------- 292
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG--KTIDFFAPAI 290
+ Q ++CG HT L+TD G ++++G GR G LG G + F P +
Sbjct: 293 RDQTISYISCGENHTALITDIGL-MYTFGDGRHGKLGLGLENFTNHFIPTL 342
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 40/221 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + AG S A+ G L+MWG+ +S + G VS+ P G V +
Sbjct: 141 KIKQLSAGSNTSAALTEDGRLFMWGD----NSEGQIGLKNVSNVC-VPQQVTIGKPVSWI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR--ESRLRPKIIETFNQDSPW 120
+CG H + + GE Y +G NG+LGL ++ + P+++ P
Sbjct: 196 SCGYYHSAFVTTDGE--------LYVFGEPENGKLGLPNQLLGNHRTPQLVSEI----PE 243
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT----TQSALVPEQVKE 176
V +V CG HT +LT E+ +TFGLG+ GQLG GT T V E +++
Sbjct: 244 KVIQVACGGEHTVVLT---------ENAVYTFGLGQFGQLGLGTFLFETSEPKVIENIRD 294
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGL 213
Q + +S CG HT++++ G ++++G + GLGL
Sbjct: 295 --QTISYIS--CGENHTALITDIGLMYTFGDGRHGKLGLGL 331
>gi|77403863|tpg|DAA05713.1| TPA_exp: RPGR ORF15 isoform [Homo sapiens]
Length = 1152
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 37/235 (15%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+ V V ACG H + G Y + G NN GQLGLGD E R
Sbjct: 78 PTCVKALKPEKVKLAACGRNHTLVSTEGGNVY--------ATGGNNEGQLGLGDTEERNT 129
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
+I F S + +++ GS +A LT R + +G GQ+G +
Sbjct: 130 FHVISFFT--SEHKIKQLSAGSNTSAALTEDGR--------LFMWGDNSEGQIGLKNVSN 179
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAG 225
VP+QV + + V +S CG +H++ V++ G+++ +G E G LGL PN L G
Sbjct: 180 VCVPQQVT-IGKPVSWIS--CGYYHSAFVTTDGELYVFGEPENGKLGL-PNQLL-----G 230
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ +P L+S P + +QVACG HTV++T++ ++++G G+ G LG G
Sbjct: 231 NHRTPQLVS----EIP--EKVIQVACGGEHTVVLTENA--VYTFGLGQFGQLGLG 277
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 126/291 (43%), Gaps = 52/291 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ S + G + + +N G L L D+ F ++S FT H + +++
Sbjct: 100 LVSTEGGNVYATGGNNEGQLG------LGDTEERNTFHVISFFTSE-------HKIKQLS 146
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS AL ED + WG N+ GQ+GL + + P+ + T + W
Sbjct: 147 AGSNTSAALT--------EDGRLFMWGDNSEGQIGLKNVSNVCVPQQV-TIGKPVSW--- 194
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG--HGTTQSALVPEQVKELPQYV 181
++CG +H+A +T + + FG ENG+LG + + P+ V E+P+ V
Sbjct: 195 -ISCGYYHSAFVT--------TDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSEIPEKV 245
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG HT VV + V+++G+ + L L I I
Sbjct: 246 --IQVACGGEHT-VVLTENAVYTFGLGQFGQLGLGTFLFETSEPKVIENI---------- 292
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG--KTIDFFAPAI 290
+ Q ++CG HT L+TD G ++++G GR G LG G + F P +
Sbjct: 293 RDQTISYISCGENHTALITDIGL-MYTFGDGRHGKLGLGLENFTNHFIPTL 342
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 40/221 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + AG S A+ G L+MWG+ +S + G VS+ P G V +
Sbjct: 141 KIKQLSAGSNTSAALTEDGRLFMWGD----NSEGQIGLKNVSNVC-VPQQVTIGKPVSWI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR--ESRLRPKIIETFNQDSPW 120
+CG H + + GE Y +G NG+LGL ++ + P+++ P
Sbjct: 196 SCGYYHSAFVTTDGE--------LYVFGEPENGKLGLPNQLLGNHRTPQLVSEI----PE 243
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT----TQSALVPEQVKE 176
V +V CG HT +LT E+ +TFGLG+ GQLG GT T V E +++
Sbjct: 244 KVIQVACGGEHTVVLT---------ENAVYTFGLGQFGQLGLGTFLFETSEPKVIENIRD 294
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGL 213
Q + +S CG HT++++ G ++++G + GLGL
Sbjct: 295 --QTISYIS--CGENHTALITDIGLMYTFGDGRHGKLGLGL 331
>gi|356501403|ref|XP_003519514.1| PREDICTED: uncharacterized protein LOC100806439 [Glycine max]
Length = 1109
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 131/294 (44%), Gaps = 37/294 (12%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ +G L+ WGN + G + VS + P V G V ++CG
Sbjct: 367 VACGEYHTCAVTLSGDLYTWGNGTY-NCGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCG 425
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ +++G G LG GDR+S P+ +E+
Sbjct: 426 PWHTAVVTSAGQ--------LFTFGDGTFGALGHGDRKSVSLPREVESLKG---LRTVRA 474
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ G+LGHG ++ LVP +V +
Sbjct: 475 ACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTRVALVNVKP 534
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
V CG T +++ G V++ G + LG+ P A D PI +
Sbjct: 535 NFCQVACGHSLTVALTTKGHVYTMGSPVYGQLGI-PQA--------DGKLPICVEW---- 581
Query: 240 GPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K + ++ACGA H ++T ++++WG+G +G LG G T D P +V
Sbjct: 582 --KLSESFVEEIACGAYHVAVLTSR-TEVYTWGKGANGRLGHGDTDDRNTPTLV 632
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 108/259 (41%), Gaps = 47/259 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +ACG H + GE + SWG G+LG G L PK+IE + +
Sbjct: 312 VQNIACGGRHAALVTKQGEIF--------SWGEEAGGRLGHGVDSDVLHPKLIEALSNTN 363
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG--ENGQLGHGTTQSALVPEQVKE 176
+ V CG +HT +T L +T+G G G LGHG S VP++V
Sbjct: 364 ---IELVACGEYHTCAVT--------LSGDLYTWGNGTYNCGLLGHGNQVSHWVPKRVNG 412
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILIS 234
+ +++ + CG +HT+VV+SAG ++++ G LG S++ +++ +
Sbjct: 413 PLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSVSLPREVESLKGLRT- 471
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGKTI 283
V+ ACG HT V + KL++WG G G LG G
Sbjct: 472 ------------VRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKE 519
Query: 284 DFFAPAIVLWPPLTEEFKQ 302
P V + F Q
Sbjct: 520 AKLVPTRVALVNVKPNFCQ 538
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 30/141 (21%)
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP-----KIIETFN 115
+VACG VAL + G Y + G+ GQLG+ + +L P K+ E+F
Sbjct: 538 QVACGHSLTVALTTKGHVY--------TMGSPVYGQLGIPQADGKL-PICVEWKLSESF- 587
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V E+ CG++H A+LT R + +T+G G NG+LGHG T P V+
Sbjct: 588 ------VEEIACGAYHVAVLTSR--------TEVYTWGKGANGRLGHGDTDDRNTPTLVE 633
Query: 176 ELPQYVYLVSVDCGLFHTSVV 196
L + S+ CG T+ +
Sbjct: 634 ALKDK-DVKSIACGTNFTAAI 653
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 20/150 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV---WDFHGHTV 59
C V G +++A+ G ++ G S G + + P+ W V
Sbjct: 535 NFCQVACGHSLTVALTTKGHVYTMG------SPVYGQLGIPQADGKLPICVEWKLSESFV 588
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++ACG+ HV L S E Y +WG NG+LG GD + R P ++E
Sbjct: 589 EEIACGAYHVAVLTSRTEVY--------TWGKGANGRLGHGDTDDRNTPTLVEALKDKD- 639
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
V + CG+ TA + K + + +SMC
Sbjct: 640 --VKSIACGTNFTAAICLHKWVSGVDQSMC 667
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G +L P+ + E + + ++ CG H ++V+ G+++SWG E G L
Sbjct: 293 GVKMDSLFPKSL-ESAVVLDVQNIACGGRHAALVTKQGEIFSWGEEAG------GRLGHG 345
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTG 280
D + P LI + VACG HT VT G L++WG G G+LG G
Sbjct: 346 VDSDVLHPKLIEALSNTNIEL-----VACGEYHTCAVTLSG-DLYTWGNGTYNCGLLGHG 399
Query: 281 KTIDFFAPAIVLWP 294
+ + P V P
Sbjct: 400 NQVSHWVPKRVNGP 413
>gi|402902028|ref|XP_003913931.1| PREDICTED: RCC1 and BTB domain-containing protein 1 isoform 2
[Papio anubis]
Length = 355
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGIAP--IQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLSPAHIM 280
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 111/263 (42%), Gaps = 42/263 (15%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLI-----KQVVEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
+ +WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 VF--------AWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKRVVGIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA-CGAAHT 256
G +++WG L + +SP I + + V++A C +AHT
Sbjct: 250 DEGLLYAWGANT------YGQLGTGNKNNLLSPAHIM------VEKERVVEIAACHSAHT 297
Query: 257 VLVTDDGYKLWSWG--RGRSGVL 277
G ++ WG RG+S +L
Sbjct: 298 SAAKTQGGHVYMWGQCRGQSVIL 320
>gi|334329483|ref|XP_003341232.1| PREDICTED: x-linked retinitis pigmentosa GTPase regulator-like
[Monodelphis domestica]
Length = 1170
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 122/280 (43%), Gaps = 70/280 (25%)
Query: 27 GNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVC 86
G L D+ F LVS FT H + +++ GS AL ED V
Sbjct: 117 GQLGLGDTEERTTFQLVSFFTAQ-------HKIKQLSAGSNTSAALT--------EDGVL 161
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
+ WG N+ GQ+GL + + P + T + W ++CG +H+A +T E
Sbjct: 162 FMWGDNSEGQIGLAEEANVCVPSEV-TIGKPISW----ISCGYYHSAFVT--------TE 208
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVK--ELPQYVYLV-----SVDCGLFHTSVVSSA 199
+TFG ENG+LG L PEQ+K +PQ V + V CG HT V +
Sbjct: 209 GELYTFGEPENGKLG-------LSPEQLKNHRIPQLVLGIPGKVNQVACGGGHT-VALTE 260
Query: 200 GDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF---QDPVQVACG 252
+V+++G+ + GLG + + P K Q +ACG
Sbjct: 261 EEVYTFGLGQFGQLGLGT-----------------FIFETSEPKVVKHLQNQKIQYIACG 303
Query: 253 AAHTVLVTDDGYKLWSWGRGRSGVLGTGKT--IDFFAPAI 290
HT L++D G+ ++++G GR G LG G+ + F P +
Sbjct: 304 ENHTALISDTGH-MYTFGDGRHGKLGLGQENFTNQFVPTL 342
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 131/289 (45%), Gaps = 49/289 (16%)
Query: 10 GGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHTVVKVACGS 66
G + I L+M+G S+ G L S T P+ V V ACG
Sbjct: 43 GDEHTALITGNSKLYMFG------SNNWGQLGLGSKTTVNKPTCVKALKPEKVKIAACGR 96
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
H + G+ Y+ G N+ GQLGLGD E R +++ F + + +++
Sbjct: 97 NHTLVYTEEGK--------VYAAGGNSEGQLGLGDTEERTTFQLVSFFT--AQHKIKQLS 146
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSV 186
GS +A LT + + + +G GQ+G + VP +V + + + +S
Sbjct: 147 AGSNTSAALTE--------DGVLFMWGDNSEGQIGLAEEANVCVPSEVT-IGKPISWIS- 196
Query: 187 DCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
CG +H++ V++ G+++++G E G LGL P + + P L+ G
Sbjct: 197 -CGYYHSAFVTTEGELYTFGEPENGKLGLSP------EQLKNHRIPQLVLG-------IP 242
Query: 245 DPV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI-DFFAPAIV 291
V QVACG HTV +T++ +++++G G+ G LG G I + P +V
Sbjct: 243 GKVNQVACGGGHTVALTEE--EVYTFGLGQFGQLGLGTFIFETSEPKVV 289
>gi|242038901|ref|XP_002466845.1| hypothetical protein SORBIDRAFT_01g015100 [Sorghum bicolor]
gi|241920699|gb|EER93843.1| hypothetical protein SORBIDRAFT_01g015100 [Sorghum bicolor]
Length = 485
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 117/283 (41%), Gaps = 74/283 (26%)
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ACG EH A+ S G + +WGAN GQLG G ES PK +++ +
Sbjct: 65 IACGREHTAAVASDGSLF--------TWGANEFGQLGDGTEESAKEPKKVKSLETE---F 113
Query: 122 VYEVTCGSFHTALLTH-RKRPNDMLESMCWTFG--------------------------- 153
V V+CG+ TA + R+ + +S W +G
Sbjct: 114 VKSVSCGAHCTAAVAEPRENDGTVSKSRLWVWGQNQGSDYPRLFWGAFTPNTVIKQVSCG 173
Query: 154 ------------------LGENGQLGHGTTQSALVPEQV--------KELPQYVYLVSVD 187
E GQLG G T L +V + P+ V +V V
Sbjct: 174 AVHVMALSEDGLLQAWGSYNEYGQLGRGRTSQGLQGARVLNAYARFLDDAPEQVKIVRVS 233
Query: 188 CGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV 247
CG +HT+ +S G+V++WG+ +G + SL + + + P I G +D
Sbjct: 234 CGEYHTAAISENGEVYTWGLGS-MGQLGHCSLQSGD--NELIPRRIV--ALDGIVVRD-- 286
Query: 248 QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
V+CG H+ VT+ G L++WG G G LG G FF+ ++
Sbjct: 287 -VSCGGVHSCAVTESG-ALYAWGGGHVGQLGVGPQGGFFSCSL 327
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 97/223 (43%), Gaps = 48/223 (21%)
Query: 87 YSWGANNNGQLGLGDRESRLR------PKIIETFNQDS-PWAVYEVTCGSFHTALLTHRK 139
Y WG N++GQ +E LR PK+ + N S W ++ CG HTA +
Sbjct: 22 YIWGYNHSGQTARKGKECHLRIPKSLPPKLFKLGNGKSLRWT--DIACGREHTAAVAS-- 77
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS-- 197
+ +T+G E GQLG GT +SA P++VK L + ++ SV CG T+ V+
Sbjct: 78 ------DGSLFTWGANEFGQLGDGTEESAKEPKKVKSL-ETEFVKSVSCGAHCTAAVAEP 130
Query: 198 -------SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
S +W WG +G + R G +I QV+
Sbjct: 131 RENDGTVSKSRLWVWGQNQG------SDYPRLFWGAFTPNTVIK-------------QVS 171
Query: 251 CGAAHTVLVTDDGYKLWSWGR-GRSGVLGTGKTIDFFAPAIVL 292
CGA H + +++DG L +WG G LG G+T A VL
Sbjct: 172 CGAVHVMALSEDGL-LQAWGSYNEYGQLGRGRTSQGLQGARVL 213
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 66/162 (40%), Gaps = 35/162 (21%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG---LGDRESRLRPKIIETFN 115
+V+V+CG H A+ GE Y +WG + GQLG L ++ L P+ I +
Sbjct: 229 IVRVSCGEYHTAAISENGEVY--------TWGLGSMGQLGHCSLQSGDNELIPRRIVALD 280
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT----------- 164
V +V+CG H+ +T + +G G GQLG G
Sbjct: 281 ---GIVVRDVSCGGVHSCAVTE--------SGALYAWGGGHVGQLGVGPQGGFFSCSLNG 329
Query: 165 TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ L V +P V L + CG HT V G ++ WG
Sbjct: 330 SDMLLRNIPVLVIPSGVRLAT--CGHSHTLVSMKDGRIYGWG 369
>gi|354500509|ref|XP_003512342.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Cricetulus
griseus]
gi|344258048|gb|EGW14152.1| RCC1 and BTB domain-containing protein 1 [Cricetulus griseus]
Length = 531
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 26/213 (12%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P ++ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGIAP--VQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +VS+ CG + V +G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTSCLHTKRVVSIACGQTSSMAVLDSGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV--QVACGAAHTVLV 259
V+ WG N L G+ ++P+ ++ Q Q+ CG AHT+ +
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVAA-------LQSVCVNQIVCGYAHTLAL 248
Query: 260 TDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
TD+G L++WG G LGTG + +P ++
Sbjct: 249 TDEGL-LYAWGANTYGQLGTGSKNNLLSPTPIM 280
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 131/322 (40%), Gaps = 54/322 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + V T + VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLI-----KQVVEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
++WG NN GQ+G G ++ P+ + + V + CG T
Sbjct: 149 V--------FAWGYNNCGQVGSGSTANQPTPRKVTSCLHTK--RVVSIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L Q V + + CG HT ++
Sbjct: 193 SMAVLDSGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-QSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV-ACGAAHT 256
G +++WG L + +SP P + + V++ AC + HT
Sbjct: 250 DEGLLYAWGANT------YGQLGTGSKNNLLSPT------PIMVEKERVVEIAACHSTHT 297
Query: 257 VLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNT 307
G ++ WG RG+S VL T FA V W L+ E +D L
Sbjct: 298 SAAKTQGGHVYMWGQCRGQSVVLPHLTHFSCTDDVFACFATPAVSWRLLSVE-HEDFLTV 356
Query: 308 GGLDDEIKTKDLEGAEERDEKL 329
D +K K+ + E D +
Sbjct: 357 A---DSLK-KEFDSPETADLRF 374
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSNCLGTGDNQSTLVPKKLEALCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+P+ + N + V+VACG+ H++ + DG ++++
Sbjct: 103 G------YSQLGNGTTNQGIAPVQVCTN----LLIKQVVEVACGSHHSMALAADG-EVFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAPAIV 291
WG G +G+G T + P V
Sbjct: 152 WGYNNCGQVGSGSTANQPTPRKV 174
>gi|426258035|ref|XP_004022625.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Ovis
aries]
Length = 1137
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 116/247 (46%), Gaps = 38/247 (15%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+ + V VACG H + L G+ Y + G NN GQLGLGD + R
Sbjct: 104 PTCIKALKPEKVKFVACGRNHTLVLTGGGKVY--------ATGGNNEGQLGLGDTDERSA 155
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
+I F S + +++ GS +A LT + + +G GQ+G +
Sbjct: 156 FHLISFFT--SQHKIKQLSAGSNTSAALTE--------DGELFMWGDNSEGQIGLQNITN 205
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAG 225
VP QV + + + +S CG +H++ V++ G+++++G E G LGL P +
Sbjct: 206 MCVPHQVT-VGKPISWIS--CGYYHSAFVTTEGELYTFGEPESGKLGLPPKLLVNHK--- 259
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK-TID 284
P L+ G + +QVACG HTV++T+ ++++G G+ G LG G T +
Sbjct: 260 ---VPQLVPGIS------EKVIQVACGGGHTVVLTEKA--VYTFGLGQFGQLGLGTFTFE 308
Query: 285 FFAPAIV 291
P ++
Sbjct: 309 TSEPKVI 315
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 40/212 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF-TPSPVWDFHGHTVVK 61
+I + AG S A+ G L+MWG+ +S + G +++ P V G +
Sbjct: 167 KIKQLSAGSNTSAALTEDGELFMWGD----NSEGQIGLQNITNMCVPHQVT--VGKPISW 220
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW- 120
++CG H + + GE Y++G +G+LGL PK++ N P
Sbjct: 221 ISCGYYHSAFVTTEGE--------LYTFGEPESGKLGLP-------PKLL--VNHKVPQL 263
Query: 121 ------AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
V +V CG HT +LT E +TFGLG+ GQLG GT +V
Sbjct: 264 VPGISEKVIQVACGGGHTVVLT---------EKAVYTFGLGQFGQLGLGTFTFETSEPKV 314
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
E + + V CG HT++++ +G ++++G
Sbjct: 315 IESVKDKKISHVCCGENHTALITESGLLYTFG 346
>gi|348528302|ref|XP_003451657.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Oreochromis
niloticus]
Length = 531
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 127/296 (42%), Gaps = 40/296 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG-NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+ + C + ++ I N ++++G NC S+ G +S+ P + G V
Sbjct: 21 IRKACVFGSSANEAIYITNDDEVFVFGLNC----SNCLGTGDSLSTIVPKKLDFLSGRKV 76
Query: 60 VKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET--FNQ 116
V ++ GS H++ GE + +WG N QLG G + P ++ N+
Sbjct: 77 VSLSYGSGPHILLATEDGELF--------AWGHNGYSQLGNGTTNQGVAPVLVSANLLNK 128
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V EV CGS H+ LT D E W G GQ+G G+T + P +V
Sbjct: 129 K----VTEVACGSHHSMALT------DTGEVYAW--GYNNCGQVGSGSTANQPTPRRVSS 176
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
Q VS+ CG + V G+V+ WG N L G+ ++P +
Sbjct: 177 CLQNKVAVSIVCGQTSSLAVVDNGEVYGWGYNG------NGQLGLGNNGNQVTPCRLV-- 228
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G G Q Q+ G AH++ +TD+G L++WG G LGTG + +P +L
Sbjct: 229 GLQGLCVQ---QIVSGYAHSMALTDEGL-LYAWGANTYGQLGTGNKSNQLSPVQIL 280
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 20/131 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS---FTPSPVWDFHGHTVVKV 62
S+ G SLA+ + G ++ WG + G L ++ TP + G V ++
Sbjct: 185 SIVCGQTSSLAVVDNGEVYGWG------YNGNGQLGLGNNGNQVTPCRLVGLQGLCVQQI 238
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
G H +AL G + Y+WGAN GQLG G++ ++L P I T + V
Sbjct: 239 VSGYAHSMALTDEG--------LLYAWGANTYGQLGTGNKSNQLSPVQILT---EKERIV 287
Query: 123 YEVTCGSFHTA 133
C S HT+
Sbjct: 288 EIAACHSTHTS 298
>gi|301791658|ref|XP_002930797.1| PREDICTED: RCC1 and BTB domain-containing protein 1-like, partial
[Ailuropoda melanoleuca]
Length = 348
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGIAP--IQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTTNQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLSPAHIM 280
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 34/222 (15%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV+VACGS H +AL + GE ++WG NN GQ+G G ++ P+ + N
Sbjct: 130 VVEVACGSHHSMALAADGEV--------FAWGYNNCGQVGSGSTTNQPTPRKVT--NCLH 179
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG T D E W G NGQLG G + L P +V L
Sbjct: 180 IKRVVGIACGQ------TSSMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL- 230
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
V + + CG HT ++ G +++WG L + +SP I
Sbjct: 231 HSVCVNQIVCGYAHTLALTDEGLLYAWGANT------YGQLGTGNKNNLLSPAHIM---- 280
Query: 239 HGPKFQDPVQV-ACGAAHTVLVTDDGYKLWSWG--RGRSGVL 277
+ + V++ AC +AHT G ++ WG RG+S VL
Sbjct: 281 --VEKERVVEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVVL 320
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSNCLGTGDNQSTLVPKKLEALCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+PI + N + V+VACG+ H++ + DG ++++
Sbjct: 103 G------YSQLGNGTTNQGIAPIQVCTN----LLIKQVVEVACGSHHSMALAADG-EVFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 152 WGYNNCGQVGSGSTTNQPTP 171
>gi|442319690|ref|YP_007359711.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
gi|441487332|gb|AGC44027.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
Length = 747
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 122/296 (41%), Gaps = 54/296 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + + AG SLA+ + GA+W WG+ G ++ SS P G T+V
Sbjct: 298 LTDVMAAVAGNYHSLAVRSDGAVWAWGDNRYRQ---LGNGNMTSSLLPIQAGLSGGITLV 354
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
G +H + L + D +SWG N GQLG G + R+ P + T +P
Sbjct: 355 ---AGFKHSLTLRA--------DGTVWSWGDNVFGQLGDGTYQPRMSPVRVATTTLGNP- 402
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V G H+ R W++G E+GQLG+G L P L
Sbjct: 403 ---GVASGQLHSVYRDSAGR--------VWSWGDNEDGQLGNGIGADKLTPA----LTGL 447
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS-----PILISG 235
VSV G HT V+ VW+WG+ +R E GD + P+ + G
Sbjct: 448 TGAVSVVAGNRHTVVLKGDTTVWAWGVN-----------SRGEVGDGTNANTSQPVRVLG 496
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ GA H++ + DG +W+WG R G LG G T+D P V
Sbjct: 497 -------LSGITAISAGAYHSLALRTDG-TVWAWGFNRYGQLGNGGTVDQNQPVQV 544
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 116/291 (39%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S I ++ AG SLA+ G +W WG G V P V G V
Sbjct: 497 LSGITAISAGAYHSLALRTDGTVWAWG---FNRYGQLGNGGTVDQNQPVQVAGLSG--VT 551
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +AL D ++WG N +GQ+G G + P ++ S
Sbjct: 552 AIAAGHSHSLALCG--------DGTVWAWGYNFDGQIGSGTNNWHILP--VQAVGLSS-- 599
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V +T G +H+ L + W++G +GQLG+G S P V L
Sbjct: 600 -VTAITAGGYHSLALRS--------DGTVWSWGYNGSGQLGNGALASLNAPGPVSNLTG- 649
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+VS+ G +H+ + S G V +WG G + SLT P++++G
Sbjct: 650 --VVSIAAGDYHSLALRSDGTVRAWGFNFD-GQIGDGSLTNRHV-----PVMVAG----- 696
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V V G H++ + DG W+WG G LG G D P V
Sbjct: 697 --MSGVVSVIAGDHHSMAMRSDG-TTWAWGANTEGQLGDGTRNDSIIPVRV 744
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 121/290 (41%), Gaps = 44/290 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + +V AGG +LA+ G +W WG+ S G ++ + P V G VV
Sbjct: 199 LGGVIAVAAGGNTTLALRADGTVWAWGDN---RSGQLGDGTVTTRGNPLQVLGLTG--VV 253
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++ G+ H VAL S G ++WG N GQLG G R P + +
Sbjct: 254 TLSAGASHCVALRSNG--------TAWTWGLNTMGQLGDGTTTQRSVPAQVGLTD----- 300
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V G++H+ L R + W +G QLG+G S+L+P Q L
Sbjct: 301 -VMAAVAGNYHS--LAVRS------DGAVWAWGDNRYRQLGNGNMTSSLLPIQAG-LSGG 350
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ LV G H+ + + G VWSWG + G + + +SP+ ++
Sbjct: 351 ITLV---AGFKHSLTLRADGTVWSWG-DNVFGQLGDGTYQPR-----MSPVRVATTTLGN 401
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
P VA G H+V D ++WSWG G LG G D PA+
Sbjct: 402 PG------VASGQLHSVY-RDSAGRVWSWGDNEDGQLGNGIGADKLTPAL 444
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 118/290 (40%), Gaps = 43/290 (14%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+ + + G S+ + + G++W WG + + G L ++ +P+PV + V
Sbjct: 50 ASVARLSLGQYHSVGVHSDGSVWAWGF----NRQGQLGNGLFTN-SPTPVKVKNLTDAVA 104
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VA G H +AL S D ++WG N +GQLG G P ++ +
Sbjct: 105 VASGDSHSLALRS--------DGTVWAWGDNYSGQLGTGSTAVSAEPVQVQGLS-----G 151
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V V G H+A L + W +G QLG T S+ VP QV P
Sbjct: 152 VLSVASGFAHSAALRS--------DGTVWAWGDNRYRQLGPLTAGSSSVPVQV---PGLG 200
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+++V G T + + G VW+WG + L TR P+ + G
Sbjct: 201 GVIAVAAGGNTTLALRADGTVWAWGDNRSGQLGDGTVTTRGN------PLQVLG------ 248
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V ++ GA+H V + +G W+WG G LG G T PA V
Sbjct: 249 -LTGVVTLSAGASHCVALRSNGTA-WTWGLNTMGQLGDGTTTQRSVPAQV 296
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 26/175 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + ++ AGG SLA+ + G +W WG S G +L S P PV + G VV
Sbjct: 597 LSSVTAITAGGYHSLALRSDGTVWSWG---YNGSGQLGNGALASLNAPGPVSNLTG--VV 651
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +AL S D +WG N +GQ+G G +R P ++ +
Sbjct: 652 SIAAGDYHSLALRS--------DGTVRAWGFNFDGQIGDGSLTNRHVPVMVAGMS----- 698
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V V G H+ + + W +G GQLG GT +++P +V+
Sbjct: 699 GVVSVIAGDHHSMAMRS--------DGTTWAWGANTEGQLGDGTRNDSIIPVRVE 745
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 115/291 (39%), Gaps = 43/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ SV AG ++ + +W WG +S E G ++ T PV +
Sbjct: 447 LTGAVSVVAGNRHTVVLKGDTTVWAWG----VNSRGEVGDG-TNANTSQPVRVLGLSGIT 501
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++ G+ H +AL + D ++WG N GQLG G + +P + +
Sbjct: 502 AISAGAYHSLALRT--------DGTVWAWGFNRYGQLGNGGTVDQNQPVQVAGLS----- 548
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G H+ L + W +G +GQ+G GT ++P Q L
Sbjct: 549 GVTAIAAGHSHSLALCG--------DGTVWAWGYNFDGQIGSGTNNWHILPVQAVGLSS- 599
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ ++ G +H+ + S G VWSWG G G N +L A +S
Sbjct: 600 --VTAITAGGYHSLALRSDGTVWSWGYN-GSGQLGNGALASLNAPGPVS----------- 645
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V +A G H++ + DG + +WG G +G G + P +V
Sbjct: 646 -NLTGVVSIAAGDYHSLALRSDG-TVRAWGFNFDGQIGDGSLTNRHVPVMV 694
>gi|357131779|ref|XP_003567511.1| PREDICTED: uncharacterized protein LOC100833487 [Brachypodium
distachyon]
Length = 913
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 121/298 (40%), Gaps = 60/298 (20%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSS------FTPSPVWDFHGHTVVKVACGSEHVVA 71
D++G +++WG +S G +++ S P P+ V V CG +H
Sbjct: 47 DSSGDVYVWGEVICENSVRAGSDAVIRSTVRHDVLLPKPLESKLVLDVYHVDCGVKHAAL 106
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
+ GE + +WG + G+LG G RE + P ++E+ + V V CG FH
Sbjct: 107 VTKNGEVF--------TWGEESGGRLGHGSREDYIHPSLVESLAVSN---VDFVACGEFH 155
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF 191
T +T E W G G LGHGT S +P+++ + + V CG +
Sbjct: 156 TCAVT------TAGELYTWGDGTHNIGLLGHGTDLSHWIPKRISGALEGQQVAYVSCGTW 209
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD------ 245
HT++++S G ++++ GD +L GN P ++
Sbjct: 210 HTALITSTGQLFTF-------------------GDGTFGVLGHGNRESIPCPREVESLSG 250
Query: 246 --PVQVACGAAHT-----VLVTDDGY-----KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ VACG HT V+VT KL++WG G LG G P V
Sbjct: 251 LKTIAVACGVWHTAAVVEVIVTQSSSSISSGKLFTWGDGDKHRLGHGDKEPRVKPTCV 308
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 132/295 (44%), Gaps = 30/295 (10%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTV 59
+S + V G + A+ AG L+ WG+ + G + +S + P + G V
Sbjct: 143 VSNVDFVACGEFHTCAVTTAGELYTWGD-GTHNIGLLGHGTDLSHWIPKRISGALEGQQV 201
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V+CG+ H + S G+ + ++G G LG G+RES P+ +E+ S
Sbjct: 202 AYVSCGTWHTALITSTGQLF--------TFGDGTFGVLGHGNRESIPCPREVESL---SG 250
Query: 120 WAVYEVTCGSFHTALLTH---RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V CG +HTA + + + + +T+G G+ +LGHG + + P V
Sbjct: 251 LKTIAVACGVWHTAAVVEVIVTQSSSSISSGKLFTWGDGDKHRLGHGDKEPRVKPTCVAS 310
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L Y + + CG T ++++G VW G+G L N D P L+
Sbjct: 311 LIDYDFH-RIACGHSLTVGLTTSGQVW------GMGNTVYGQLG-NPRSDGKLPCLVED- 361
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ VQVACG+ H ++T ++++WG+G +G LG G D P +V
Sbjct: 362 ----IMGENVVQVACGSYHVAVLTVKS-EVFTWGKGANGRLGHGDIEDRKIPTLV 411
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 21/146 (14%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNC---PLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ G +++ + +G +W GN L + ++G P V D G VV+VA
Sbjct: 319 IACGHSLTVGLTTSGQVWGMGNTVYGQLGNPRSDGKL-------PCLVEDIMGENVVQVA 371
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CGS HV L E ++WG NG+LG GD E R P ++E V
Sbjct: 372 CGSYHVAVLTVKSEV--------FTWGKGANGRLGHGDIEDRKIPTLVEVLRDR---GVR 420
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMC 149
+ CG+ TA + RK + +S C
Sbjct: 421 HIACGANFTAAICQRKWMSGAEQSQC 446
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 105/260 (40%), Gaps = 30/260 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
Q+ V G + I + G L+ +G+ G + S P V G + V
Sbjct: 200 QVAYVSCGTWHTALITSTGQLFTFGDGTF---GVLGHGNRESIPCPREVESLSGLKTIAV 256
Query: 63 ACGSEHVVALVSAGETYKGEDLV---CYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
ACG H A+V T + ++WG + +LG GD+E R++P + +
Sbjct: 257 ACGVWHTAAVVEVIVTQSSSSISSGKLFTWGDGDKHRLGHGDKEPRVKPTCVASLID--- 313
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ + + CG T LT W G GQLG+ + L P V+++
Sbjct: 314 YDFHRIACGHSLTVGLT--------TSGQVWGMGNTVYGQLGNPRSDGKL-PCLVEDI-M 363
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+V V CG +H +V++ +V++WG KG N L + D P L+
Sbjct: 364 GENVVQVACGSYHVAVLTVKSEVFTWG--KG----ANGRLGHGDIEDRKIPTLVEVLRDR 417
Query: 240 GPKFQDPVQVACGAAHTVLV 259
G + +ACGA T +
Sbjct: 418 GVR-----HIACGANFTAAI 432
>gi|356536635|ref|XP_003536842.1| PREDICTED: uncharacterized protein LOC100812689 [Glycine max]
Length = 1078
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 138/312 (44%), Gaps = 64/312 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL-----VSSFTPSPVW-DF 54
++ + V G S A+ +G L+ WG+ T G L VS + P V
Sbjct: 312 ITNVTFVACGEYHSCAVSTSGDLFTWGD------GTHGAGLLGHGTDVSYWIPKRVSGPL 365
Query: 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
G VV VACG+ H S G+ +++G G LG G+R S PK ++
Sbjct: 366 EGLQVVAVACGTWHSALATSNGK--------LFTFGDGRFGVLGHGNRASVAYPKEVQLL 417
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE--------SMCWTFGLGENGQLGHGTTQ 166
S + +V CG +H+A + D+++ +T+G G+ +LGH +
Sbjct: 418 ---SGYKAIKVACGVWHSAAII------DVMDLSGSKASAKRLFTWGDGDQYRLGHANKE 468
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG-MEKGLGLCPNASLTRNEAG 225
+ L P V + +Y + V CG T ++++G V+S G G PN+
Sbjct: 469 TYLEPTCVAAVAEYNFH-QVACGYTMTVALTASGHVFSMGGTTYGQLGNPNS-------- 519
Query: 226 DAISPILISGNGPHGPKFQDPV------QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
D PIL+ +D + +++CGA H ++T +L++WGRG +G LG
Sbjct: 520 DGKVPILV----------RDKLVGEFVEEISCGANHVAVLTSRS-ELYTWGRGANGRLGH 568
Query: 280 GKTIDFFAPAIV 291
G T D +P +V
Sbjct: 569 GDTDDKKSPTLV 580
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 127/290 (43%), Gaps = 43/290 (14%)
Query: 17 IDNAGALWMWGNCPLPDSSTEGGFSLVSSF------TPSPVWDFHGHTVVKVACGSEHVV 70
I++ G +++WG +S +G S + +F TP P+ V ++ G H+
Sbjct: 215 IESLGDVYIWGEVWADGNSFDGLGSQLQAFCKTDVLTPKPLESDVVLDVHQIGPGDRHIA 274
Query: 71 ALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF 130
+ GE + +WG ++ G+LG G + RP ++E+ + V V CG +
Sbjct: 275 LVTRQGEVF--------TWGEDSGGRLGHGFEKDFGRPHLVESLAITN---VTFVACGEY 323
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
H+ ++ D+ W G G LGHGT S +P++V + + +V+V CG
Sbjct: 324 HSCAVS---TSGDLF---TWGDGTHGAGLLGHGTDVSYWIPKRVSGPLEGLQVVAVACGT 377
Query: 191 FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
+H+++ +S G ++++G + G+ + + R L+SG ++VA
Sbjct: 378 WHSALATSNGKLFTFG-DGRFGVLGHGN--RASVAYPKEVQLLSG--------YKAIKVA 426
Query: 251 CGAAHTVLVTD---------DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
CG H+ + D +L++WG G LG + P V
Sbjct: 427 CGVWHSAAIIDVMDLSGSKASAKRLFTWGDGDQYRLGHANKETYLEPTCV 476
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 33/191 (17%)
Query: 12 MMSLAIDNAGA--LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHV 69
+M L+ A A L+ WG+ D G + + P+ V + +VACG
Sbjct: 438 VMDLSGSKASAKRLFTWGD---GDQYRLGHANKETYLEPTCVAAVAEYNFHQVACGYTMT 494
Query: 70 VALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL----RPKIIETFNQDSPWAVYEV 125
VAL ++G + S G GQLG + + ++ R K++ F V E+
Sbjct: 495 VALTASGHVF--------SMGGTTYGQLGNPNSDGKVPILVRDKLVGEF-------VEEI 539
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
+CG+ H A+LT R S +T+G G NG+LGHG T P V+ L ++ +
Sbjct: 540 SCGANHVAVLTSR--------SELYTWGRGANGRLGHGDTDDKKSPTLVEALKDR-HVKN 590
Query: 186 VDCGLFHTSVV 196
+ CG TS +
Sbjct: 591 ISCGSTFTSCI 601
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 20/146 (13%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW---DFHGHTVVKVA 63
V G M++A+ +G ++ G +T G +S P+ G V +++
Sbjct: 487 VACGYTMTVALTASGHVFSMGG------TTYGQLGNPNSDGKVPILVRDKLVGEFVEEIS 540
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG+ HV L S E Y+WG NG+LG GD + + P ++E V
Sbjct: 541 CGANHVAVLTSRSE--------LYTWGRGANGRLGHGDTDDKKSPTLVEALKDRH---VK 589
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMC 149
++CGS T+ + K + + +S+C
Sbjct: 590 NISCGSTFTSCICLHKWVSGVDQSVC 615
>gi|57242759|ref|NP_060661.3| RCC1 and BTB domain-containing protein 1 [Homo sapiens]
gi|114649667|ref|XP_001155108.1| PREDICTED: RCC1 and BTB domain-containing protein 1 isoform 3 [Pan
troglodytes]
gi|397476979|ref|XP_003809865.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Pan paniscus]
gi|74751227|sp|Q8NDN9.1|RCBT1_HUMAN RecName: Full=RCC1 and BTB domain-containing protein 1; AltName:
Full=Chronic lymphocytic leukemia deletion region gene 7
protein; Short=CLL deletion region gene 7 protein;
AltName: Full=Regulator of chromosome condensation and
BTB domain-containing protein 1
gi|21739270|emb|CAD38683.1| hypothetical protein [Homo sapiens]
gi|117646918|emb|CAL37574.1| hypothetical protein [synthetic construct]
gi|208965426|dbj|BAG72727.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 1 [synthetic construct]
gi|410208766|gb|JAA01602.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 1 [Pan troglodytes]
gi|410264076|gb|JAA20004.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 1 [Pan troglodytes]
gi|410293802|gb|JAA25501.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 1 [Pan troglodytes]
gi|410338539|gb|JAA38216.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 1 [Pan troglodytes]
Length = 531
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P ++ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGIAP--VQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLSPAHIM 280
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 129/322 (40%), Gaps = 54/322 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + V T + VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLI-----KQVVEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
+ +WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 VF--------AWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKRVVGIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA-CGAAHT 256
G +++WG L + +SP I + + V++A C +AHT
Sbjct: 250 DEGLLYAWGANT------YGQLGTGNKNNLLSPAHIM------VEKERVVEIAACHSAHT 297
Query: 257 VLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNT 307
G ++ WG RG+S +L T FA V W L+ E +D L
Sbjct: 298 SAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACFATPAVSWRLLSVE-HEDFLTV 356
Query: 308 GGLDDEIKTKDLEGAEERDEKL 329
E K+ + E D K
Sbjct: 357 A----ESLKKEFDSPETADLKF 374
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSNCLGTGDNQSTLVPKKLEGLCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+P+ + N + V+VACG+ H++ + DG ++++
Sbjct: 103 G------YSQLGNGTTNQGIAPVQVCTN----LLIKQVVEVACGSHHSMALAADG-EVFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAPAIV 291
WG G +G+G T + P V
Sbjct: 152 WGYNNCGQVGSGSTANQPTPRKV 174
>gi|380792689|gb|AFE68220.1| RCC1 and BTB domain-containing protein 1, partial [Macaca mulatta]
Length = 345
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGIAP--IQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLSPAHIM 280
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 34/222 (15%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV+VACGS H +AL + GE + +WG NN GQ+G G ++ P+ + N
Sbjct: 130 VVEVACGSHHSMALAADGEVF--------AWGYNNCGQVGSGSTANQPTPRKVT--NCLH 179
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + CG T D E W G NGQLG G + L P +V L
Sbjct: 180 IKRVVGIACGQ------TSSMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL- 230
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
V + + CG HT ++ G +++WG L + +SP I
Sbjct: 231 HSVCVNQIVCGYAHTLALTDEGLLYAWGANT------YGQLGTGNKNNLLSPAHIM---- 280
Query: 239 HGPKFQDPVQVA-CGAAHTVLVTDDGYKLWSWG--RGRSGVL 277
+ + V++A C +AHT G ++ WG RG+S +L
Sbjct: 281 --VEKERVVEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVIL 320
>gi|13699242|gb|AAK38372.1|AF334406_1 CLLL7 protein [Homo sapiens]
gi|14275565|emb|CAC40027.1| guanine nucleotide exchange factor [Homo sapiens]
gi|21756194|dbj|BAC04833.1| unnamed protein product [Homo sapiens]
gi|119629234|gb|EAX08829.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
containing protein 1 [Homo sapiens]
Length = 531
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P ++ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGIAP--VQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLSPAHIM 280
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 129/322 (40%), Gaps = 54/322 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + V T + VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLI-----KQVVEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
+ +WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 VF--------AWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKRVVGIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA-CGAAHT 256
G +++WG L + +SP I + + V++A C +AHT
Sbjct: 250 DEGLLYAWGANT------YGQLGTGNKNNLLSPAHIM------VEKERVVEIAACHSAHT 297
Query: 257 VLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNT 307
G ++ WG RG+S +L T FA V W L+ E +D L
Sbjct: 298 SAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACFATPAVSWRLLSVE-HEDFLTV 356
Query: 308 GGLDDEIKTKDLEGAEERDEKL 329
E K+ + E D K
Sbjct: 357 A----ESLKKEFDSPETADLKF 374
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSNCLGTGDNQSTLVPKKLEGLCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+P+ + N + V+VACG+ H++ + DG ++++
Sbjct: 103 G------YSQLGNGTTNQGIAPVQVCTN----LLIKQVVEVACGSHHSMALAADG-EVFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 152 WGYNNCGQVGSGSTANQPTP 171
>gi|413942403|gb|AFW75052.1| putative regulator of chromosome condensation (RCC1) family
protein, partial [Zea mays]
Length = 688
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 124/292 (42%), Gaps = 46/292 (15%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSS------FTPSPVWDFHGHTVVKVACGSEHVVA 71
D+ G +++WG S G +++SS P P+ V V CG +H
Sbjct: 32 DSLGDVYVWGEVVCDTSVRTGSDTVISSTGRIDILLPKPLESNLVLDVYHVDCGVKHAAL 91
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
++ GE + +WG ++ G+LG G RE +RP+++E+ + V V CG FH
Sbjct: 92 VMKNGEVF--------TWGEDSGGRLGHGTREDCVRPRLVESLTVSN---VDFVACGEFH 140
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF 191
T +T E W G G LGHG +P+++ + + + V CG +
Sbjct: 141 TCAVTTTG------ELYTWGDGTYNVGLLGHGNDVGHWIPKRISGALEGLQVAYVSCGTW 194
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
HT++++S G ++++G + G+ + L + +SG + VAC
Sbjct: 195 HTALITSMGQLFTFG-DGSFGVLGHGDLKSVSYPREVES--LSG--------LKTIAVAC 243
Query: 252 GAAHT-----VLVTDDGY-------KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G HT V+VT KL++WG G LG G P V
Sbjct: 244 GVWHTAAIVEVIVTRSSSSVKLSAGKLFTWGDGDKHRLGHGDKETRLKPTCV 295
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 23/178 (12%)
Query: 19 NAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGET 78
+AG L+ WG+ D G + P+ V H +VACG VAL ++G+
Sbjct: 266 SAGKLFTWGD---GDKHRLGHGDKETRLKPTCVATLIDHDFYRVACGHSLTVALTTSGQV 322
Query: 79 YKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
S G GQLG + R+ P ++E ++ V ++ CGS+H A+LT+R
Sbjct: 323 L--------SMGNAVYGQLGNPHSDGRI-PCLVE--DKIVGEQVLQIACGSYHVAVLTNR 371
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
S +T+G G NG+LGHG T+ VP V+ L + + CG T+ +
Sbjct: 372 --------SEVFTWGKGANGRLGHGDTEDRKVPTLVEALKDRA-VRYIACGANFTAAI 420
>gi|355569557|gb|EHH25458.1| Putative E3 ubiquitin-protein ligase HERC6 [Macaca mulatta]
Length = 1020
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 112/246 (45%), Gaps = 31/246 (12%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRL 106
P P+ V V+CG EH +A+ G ++WGA + GQLG+G+ +E
Sbjct: 66 PEPIQALETLNVDLVSCGKEHSLAVCHKGRV--------FAWGAGSEGQLGIGEFKEISF 117
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-T 165
PK I T N + +V+CG +H+ L+ +S +++G +GQLG G
Sbjct: 118 TPKKITTLNG---IKIIQVSCGHYHSLALSK--------DSQVFSWGKNSHGQLGLGKEV 166
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
S P++V+ L + + L V G H+ +S G + WG L + RN
Sbjct: 167 PSQASPQRVRSL-EGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSG---RNVPV 222
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ P+ I G + ++CG HT ++ DG K++++G SG LG T +
Sbjct: 223 QSNKPLSIGALKNLG-----VIYISCGDEHTAVLIQDG-KVFTFGDNSSGQLGYSPTPEK 276
Query: 286 FAPAIV 291
P +V
Sbjct: 277 RGPQLV 282
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 62/284 (21%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHTVVKV 62
V G SLA+ + G ++ WG + +EG + SFTP + +G +++V
Sbjct: 80 VSCGKEHSLAVCHKGRVFAWG------AGSEGQLGIGEFKEISFTPKKITTLNGIKIIQV 133
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWA 121
+CG H +AL +D +SWG N++GQLGLG S+ P+ + + + P A
Sbjct: 134 SCGHYHSLAL--------SKDSQVFSWGKNSHGQLGLGKEVPSQASPQRVRSL-EGIPLA 184
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWT-FGLGEN--GQL---GHGTTQSALVPEQVK 175
+V G H+ L S+C T FG G N GQL G + P +
Sbjct: 185 --QVAAGGAHSFAL-----------SLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSIG 231
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L + + ++ + CG HT+V+ G V+++G N+S + G + +P
Sbjct: 232 AL-KNLGVIYISCGDEHTAVLIQDGKVFTFG--------DNSS---GQLGYSPTP----- 274
Query: 236 NGPHGPKFQDPV-----QVACGAAHTVLVTDDGYKLWSWGRGRS 274
GP+ + + Q+ CG+ HT+ ++ S+G G S
Sbjct: 275 -EKRGPQLVERIDGLVSQIDCGSYHTLAYVHTTGQVISFGHGPS 317
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ G + WG+ + G V S P + V+ ++
Sbjct: 183 LAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSIGALKNLGVIYIS 242
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG EH L+ G+ +++G N++GQLG + P+++E + V
Sbjct: 243 CGDEHTAVLIQDGKV--------FTFGDNSSGQLGYSPTPEKRGPQLVERID----GLVS 290
Query: 124 EVTCGSFHTALLTH 137
++ CGS+HT H
Sbjct: 291 QIDCGSYHTLAYVH 304
>gi|384939244|gb|AFI33227.1| putative E3 ubiquitin-protein ligase HERC6 isoform 1 [Macaca
mulatta]
Length = 1020
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 31/246 (12%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRL 106
P P+ V V+CG EH +A+ G ++WGA + GQLG+G+ +E
Sbjct: 66 PEPIQALETLNVDLVSCGKEHSLAVCHKGRV--------FAWGAGSEGQLGIGEFKEISF 117
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-T 165
PK I T N + +V+CG +H+ L+ +S +++G +GQLG G
Sbjct: 118 TPKKITTLNG---IKIIQVSCGHYHSLALSK--------DSQVFSWGKNSHGQLGLGKEV 166
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
S P++V+ L + + L V G H+ +S G + WG L A RN
Sbjct: 167 PSQASPQRVRSL-EGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQL---ALSGRNVPV 222
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ P+ I G + ++CG HT ++ DG K++++G SG LG T +
Sbjct: 223 QSNKPLSIGALKNLG-----VIYISCGDEHTAVLIQDG-KVFTFGDNSSGQLGYSPTPEK 276
Query: 286 FAPAIV 291
P +V
Sbjct: 277 RGPQLV 282
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 62/284 (21%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHTVVKV 62
V G SLA+ + G ++ WG + +EG + SFTP + +G +++V
Sbjct: 80 VSCGKEHSLAVCHKGRVFAWG------AGSEGQLGIGEFKEISFTPKKITTLNGIKIIQV 133
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWA 121
+CG H +AL +D +SWG N++GQLGLG S+ P+ + + + P A
Sbjct: 134 SCGHYHSLAL--------SKDSQVFSWGKNSHGQLGLGKEVPSQASPQRVRSL-EGIPLA 184
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWT-FGLGEN--GQL---GHGTTQSALVPEQVK 175
+V G H+ L S+C T FG G N GQL G + P +
Sbjct: 185 --QVAAGGAHSFAL-----------SLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSIG 231
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L + + ++ + CG HT+V+ G V+++G N+S + G + +P
Sbjct: 232 AL-KNLGVIYISCGDEHTAVLIQDGKVFTFG--------DNSS---GQLGYSPTP----- 274
Query: 236 NGPHGPKFQDPV-----QVACGAAHTVLVTDDGYKLWSWGRGRS 274
GP+ + + Q+ CG+ HT+ ++ S+G G S
Sbjct: 275 -EKRGPQLVERIDGLVSQIDCGSYHTLAYVHTTGQVISFGHGPS 317
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ G + WG+ + G V S P + V+ ++
Sbjct: 183 LAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSIGALKNLGVIYIS 242
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG EH L+ G+ +++G N++GQLG + P+++E + V
Sbjct: 243 CGDEHTAVLIQDGKV--------FTFGDNSSGQLGYSPTPEKRGPQLVERID----GLVS 290
Query: 124 EVTCGSFHTALLTH 137
++ CGS+HT H
Sbjct: 291 QIDCGSYHTLAYVH 304
>gi|414586169|tpg|DAA36740.1| TPA: putative regulator of chromosome condensation (RCC1) family
protein [Zea mays]
Length = 1056
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 127/296 (42%), Gaps = 68/296 (22%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
F P V V +ACG H A+ + G+ Y D G +N G LG G S
Sbjct: 304 FQPRLVESLSTCNVELIACGEFHTCAVTATGDLYTWGD------GTHNAGLLGHGSNVSH 357
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
PK + P V V+CG++HTAL+T +TFG G G LGHG
Sbjct: 358 WIPKRVSGPLDGLP--VSAVSCGTWHTALITS--------SGQLYTFGDGTFGVLGHGNR 407
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVV---------SSAGDVWSWGM--------- 207
S P++V+ L + + +SV CG++HT+ V +S+G +++WG
Sbjct: 408 ASCSYPKEVESL-KGLRTISVSCGVWHTAAVVEVIISQSNASSGKLFTWGDGDKYRLGHG 466
Query: 208 EKGLGLCP-------NASLTRNEAGDAI--------------SPILISGNGPHG----PK 242
++ L P + + + G + SP+ P+ P+
Sbjct: 467 DRSSKLKPTCVPSLIDYNFHKAACGHTLTIGLTTSGHIFTVGSPVYGQLGNPNNDGRYPR 526
Query: 243 FQDP-------VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ V+VACG+ H ++T+ G ++++WG+G +G LG G D P +V
Sbjct: 527 LVEEQLGGGGVVEVACGSYHVAVLTNAG-EVYTWGKGTNGRLGHGDIADRKVPTLV 581
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 118/288 (40%), Gaps = 47/288 (16%)
Query: 21 GALWMWGN--CPL-----PDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
G +++WG C D S + P P+ V VACG +H +
Sbjct: 220 GDIYVWGEVICDTISRSGSDRSAYSPGTTTDVLVPKPLESNVMLDVSYVACGVKHAALVT 279
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
E + +WG +G+LG G + +P+++E+ S V + CG FHT
Sbjct: 280 RQAEVF--------TWGEECSGRLGHGIGTNVFQPRLVESL---STCNVELIACGEFHTC 328
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
+T D+ W G G LGHG+ S +P++V + + +V CG +HT
Sbjct: 329 AVTA---TGDL---YTWGDGTHNAGLLGHGSNVSHWIPKRVSGPLDGLPVSAVSCGTWHT 382
Query: 194 SVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
++++S+G ++++ G LG AS + + +++ + + V+C
Sbjct: 383 ALITSSGQLYTFGDGTFGVLGHGNRASCSYPKEVESLKGLRT-------------ISVSC 429
Query: 252 GAAHTVLVTD--------DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G HT V + KL++WG G LG G P V
Sbjct: 430 GVWHTAAVVEVIISQSNASSGKLFTWGDGDKYRLGHGDRSSKLKPTCV 477
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 110/260 (42%), Gaps = 33/260 (12%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ +V G + I ++G L+ +G+ G + S P V G + V+
Sbjct: 372 VSAVSCGTWHTALITSSGQLYTFGDGTF---GVLGHGNRASCSYPKEVESLKGLRTISVS 428
Query: 64 CGSEHVVALV----SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
CG H A+V S G+ ++WG + +LG GDR S+L+P + +
Sbjct: 429 CGVWHTAAVVEVIISQSNASSGK---LFTWGDGDKYRLGHGDRSSKLKPTCVPSLID--- 482
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ ++ CG T LT +T G GQLG+ P V+E
Sbjct: 483 YNFHKAACGHTLTIGLT--------TSGHIFTVGSPVYGQLGN-PNNDGRYPRLVEEQLG 533
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+V V CG +H +V+++AG+V++WG KG N L + D P L+
Sbjct: 534 GGGVVEVACGSYHVAVLTNAGEVYTWG--KGT----NGRLGHGDIADRKVPTLV-----E 582
Query: 240 GPKFQDPVQVACGAAHTVLV 259
K + +VACG++ T +
Sbjct: 583 ALKDRSVKRVACGSSFTAAI 602
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G VV+VACGS HV L +AGE Y+WG NG+LG GD R P ++E
Sbjct: 534 GGGVVEVACGSYHVAVLTNAGEV--------YTWGKGTNGRLGHGDIADRKVPTLVEALK 585
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
S V V CGS TA + K + M +S C
Sbjct: 586 DRS---VKRVACGSSFTAAICQHKWVSGMEQSQC 616
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 163 GTTQSALVPEQVKELPQYVYL-VS-VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
GTT LVP K L V L VS V CG+ H ++V+ +V++WG E C + L
Sbjct: 246 GTTTDVLVP---KPLESNVMLDVSYVACGVKHAALVTRQAEVFTWGEE-----C-SGRLG 296
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLG 278
+ P L+ + +ACG HT VT G L++WG G +G+LG
Sbjct: 297 HGIGTNVFQPRLVESLSTCNVEL-----IACGEFHTCAVTATG-DLYTWGDGTHNAGLLG 350
Query: 279 TGKTIDFFAPAIVLWP 294
G + + P V P
Sbjct: 351 HGSNVSHWIPKRVSGP 366
>gi|351698259|gb|EHB01178.1| Putative E3 ubiquitin-protein ligase HERC1, partial [Heterocephalus
glaber]
Length = 3493
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 127/282 (45%), Gaps = 35/282 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 2719 SMALTESGEVFSWGDG---DYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 2775
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK---IIETFNQDSPW-AVYEVTCGS 129
S G+ +++G + G+LGLG+ ++ P+ +E + W Y V CG
Sbjct: 2776 SDGK--------LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQAWNKSYSVACGL 2827
Query: 130 FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCG 189
HT ++ SM W FG G+ G+LG G + + P++V L + + V CG
Sbjct: 2828 NHTLAVSTDG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACG 2879
Query: 190 LFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV 249
+ ++ G V+++G ++ +GL P RN P+L G +D V
Sbjct: 2880 TQFSVALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQVPVLA------GVVIED---V 2928
Query: 250 ACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
A GA HT+ + G +++WG G LG G T P +V
Sbjct: 2929 AVGAEHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 2969
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P V G +
Sbjct: 2873 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQVPVLAGVVIE 2926
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 2927 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 2976
Query: 121 AVYEVTCGSFHTALLT 136
+ +++ G H+A T
Sbjct: 2977 -IRQISAGRCHSAAWT 2991
>gi|387540886|gb|AFJ71070.1| putative E3 ubiquitin-protein ligase HERC6 isoform 1 [Macaca
mulatta]
Length = 1020
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 31/246 (12%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRL 106
P P+ V V+CG EH +A+ G ++WGA + GQLG+G+ +E
Sbjct: 66 PEPIQALETLNVDLVSCGKEHSLAVCHKGRV--------FAWGAGSEGQLGIGEFKEISF 117
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-T 165
PK I T N + +V+CG +H+ L+ +S +++G +GQLG G
Sbjct: 118 TPKKITTLNG---IKIIQVSCGHYHSLALSK--------DSQVFSWGKNSHGQLGLGKEV 166
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
S P++V+ L + + L V G H+ +S G + WG L A RN
Sbjct: 167 PSQASPQRVRSL-EGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQL---ALSGRNVPV 222
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ P+ I G + ++CG HT ++ DG K++++G SG LG T +
Sbjct: 223 QSNKPLSIGALKNLG-----VIYISCGDEHTAVLIQDG-KVFTFGDNSSGQLGYSPTPEK 276
Query: 286 FAPAIV 291
P +V
Sbjct: 277 RGPQLV 282
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 62/284 (21%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHTVVKV 62
V G SLA+ + G ++ WG + +EG + SFTP + +G +++V
Sbjct: 80 VSCGKEHSLAVCHKGRVFAWG------AGSEGQLGIGEFKEISFTPKKITTLNGIKIIQV 133
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWA 121
+CG H +AL +D +SWG N++GQLGLG S+ P+ + + + P A
Sbjct: 134 SCGHYHSLAL--------SKDSQVFSWGKNSHGQLGLGKEVPSQASPQRVRSL-EGIPLA 184
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWT-FGLGEN--GQL---GHGTTQSALVPEQVK 175
+V G H+ L S+C T FG G N GQL G + P +
Sbjct: 185 --QVAAGGAHSFAL-----------SLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSIG 231
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L + + ++ + CG HT+V+ G V+++G N+S + G + +P
Sbjct: 232 AL-KNLGVIYISCGDEHTAVLIQDGKVFTFG--------DNSS---GQLGYSPTP----- 274
Query: 236 NGPHGPKFQDPV-----QVACGAAHTVLVTDDGYKLWSWGRGRS 274
GP+ + + Q+ CG+ HT+ ++ S+G G S
Sbjct: 275 -EKRGPQLVERIDGLVSQIDCGSYHTLAYVHTTGQVISFGHGPS 317
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ G + WG+ + G V S P + V+ ++
Sbjct: 183 LAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSIGALKNLGVIYIS 242
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG EH L+ G+ +++G N++GQLG + P+++E + V
Sbjct: 243 CGDEHTAVLIQDGKV--------FTFGDNSSGQLGYSPTPEKRGPQLVERID----GLVS 290
Query: 124 EVTCGSFHTALLTH 137
++ CGS+HT H
Sbjct: 291 QIDCGSYHTLAYVH 304
>gi|5823976|emb|CAB54002.1| RPGR protein [Homo sapiens]
gi|119579848|gb|EAW59444.1| retinitis pigmentosa GTPase regulator, isoform CRA_d [Homo sapiens]
Length = 646
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 37/235 (15%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+ V V ACG H + G Y + G NN GQLGLGD E R
Sbjct: 78 PTCVKALKPEKVKLAACGRNHTLVSTEGGNVY--------ATGGNNEGQLGLGDTEERNT 129
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
+I F S + +++ GS +A LT R + +G GQ+G +
Sbjct: 130 FHVISFFT--SEHKIKQLSAGSNTSAALTEDGR--------LFMWGDNSEGQIGLKNVSN 179
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAG 225
VP+QV + + V +S CG +H++ V++ G+++ +G E G LGL PN L G
Sbjct: 180 VCVPQQVT-IGKPVSWIS--CGYYHSAFVTTDGELYVFGEPENGKLGL-PNQLL-----G 230
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ +P L+S P + +QVACG HTV++T++ ++++G G+ G LG G
Sbjct: 231 NHRTPQLVS----EIP--EKVIQVACGGEHTVVLTENA--VYTFGLGQFGQLGLG 277
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 126/291 (43%), Gaps = 52/291 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ S + G + + +N G L L D+ F ++S FT H + +++
Sbjct: 100 LVSTEGGNVYATGGNNEGQLG------LGDTEERNTFHVISFFTSE-------HKIKQLS 146
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS AL ED + WG N+ GQ+GL + + P+ + T + W
Sbjct: 147 AGSNTSAALT--------EDGRLFMWGDNSEGQIGLKNVSNVCVPQQV-TIGKPVSW--- 194
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG--HGTTQSALVPEQVKELPQYV 181
++CG +H+A +T + + FG ENG+LG + + P+ V E+P+ V
Sbjct: 195 -ISCGYYHSAFVT--------TDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSEIPEKV 245
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG HT VV + V+++G+ + L L I I
Sbjct: 246 --IQVACGGEHT-VVLTENAVYTFGLGQFGQLGLGTFLFETSEPKVIENI---------- 292
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG--KTIDFFAPAI 290
+ Q ++CG HT L+TD G ++++G GR G LG G + F P +
Sbjct: 293 RDQTISYISCGENHTALITDIGL-MYTFGDGRHGKLGLGLENFTNHFIPTL 342
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 40/221 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + AG S A+ G L+MWG+ +S + G VS+ P G V +
Sbjct: 141 KIKQLSAGSNTSAALTEDGRLFMWGD----NSEGQIGLKNVSNVC-VPQQVTIGKPVSWI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR--ESRLRPKIIETFNQDSPW 120
+CG H + + GE Y +G NG+LGL ++ + P+++ + P
Sbjct: 196 SCGYYHSAFVTTDGE--------LYVFGEPENGKLGLPNQLLGNHRTPQLV----SEIPE 243
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT----TQSALVPEQVKE 176
V +V CG HT +LT E+ +TFGLG+ GQLG GT T V E +++
Sbjct: 244 KVIQVACGGEHTVVLT---------ENAVYTFGLGQFGQLGLGTFLFETSEPKVIENIRD 294
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGL 213
Q + +S CG HT++++ G ++++G + GLGL
Sbjct: 295 --QTISYIS--CGENHTALITDIGLMYTFGDGRHGKLGLGL 331
>gi|224055315|ref|XP_002298476.1| predicted protein [Populus trichocarpa]
gi|222845734|gb|EEE83281.1| predicted protein [Populus trichocarpa]
Length = 1109
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 108/248 (43%), Gaps = 47/248 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +ACG +H + GE + SWG + G+LG G L P++IE + +
Sbjct: 317 VQNIACGGQHAALVTKQGEIF--------SWGEESGGRLGHGVDSDVLHPQLIEALSNTN 368
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKE 176
+ V CG +HT +T L +T+G G G LGHG S VP++V
Sbjct: 369 ---IEFVACGEYHTCAVT--------LSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNG 417
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILIS 234
+ +++ S+ CG +HT+VVSSAG ++++ G LG S++ +++ +
Sbjct: 418 PLEGIHVSSISCGPWHTAVVSSAGQLFTFGDGTFGVLGHGDRKSISLPREVESLKGLRT- 476
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGKTI 283
VQ ACG HT V + KL++WG G G LG G
Sbjct: 477 ------------VQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKE 524
Query: 284 DFFAPAIV 291
P V
Sbjct: 525 AKLVPTCV 532
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 128/290 (44%), Gaps = 30/290 (10%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ +G L+ WG+ + G + VS + P V G V ++CG
Sbjct: 372 VACGEYHTCAVTLSGDLYTWGDGTY-NFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCG 430
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ +++G G LG GDR+S P+ +E+ +
Sbjct: 431 PWHTAVVSSAGQ--------LFTFGDGTFGVLGHGDRKSISLPREVESLKG---LRTVQA 479
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ G+LGHG ++ LVP V L +
Sbjct: 480 ACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVSALVEPN 539
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG T +++G V++ G P N D P + G
Sbjct: 540 F-CQVACGHSLTIARTTSGHVYTMG-------SPVYGQLGNPQSDGKLPARVEGKLSR-- 589
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ACGA H ++T ++++WG+G +G LG G T D P++V
Sbjct: 590 --SSVEEIACGAYHVAVLTSK-TEVYTWGKGANGRLGHGDTDDKNLPSLV 636
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 23/176 (13%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80
G L+ WG+ D G + P+ V +VACG +A ++G Y
Sbjct: 505 GKLFTWGD---GDKGRLGHGDKEAKLVPTCVSALVEPNFCQVACGHSLTIARTTSGHVY- 560
Query: 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKR 140
+ G+ GQLG + +L ++ ++ S V E+ CG++H A+LT +
Sbjct: 561 -------TMGSPVYGQLGNPQSDGKLPARVEGKLSRSS---VEEIACGAYHVAVLTSK-- 608
Query: 141 PNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
+ +T+G G NG+LGHG T +P V+ L + S+ CG T+ +
Sbjct: 609 ------TEVYTWGKGANGRLGHGDTDDKNLPSLVEALKDK-QVKSIACGTNFTAAI 657
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V ++ACG+ HV L S E Y +WG NG+LG GD + + P ++E
Sbjct: 591 SVEEIACGAYHVAVLTSKTEVY--------TWGKGANGRLGHGDTDDKNLPSLVEALKDK 642
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
V + CG+ TA + K + + +SMC
Sbjct: 643 Q---VKSIACGTNFTAAICLHKWVSGVDQSMC 671
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 15/134 (11%)
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G +L+P+ + E + + ++ CG H ++V+ G+++SWG E G L
Sbjct: 298 GVKMDSLLPKAL-ESAVVLDVQNIACGGQHAALVTKQGEIFSWGEESG------GRLGHG 350
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTG 280
D + P LI +F VACG HT VT G L++WG G G+LG G
Sbjct: 351 VDSDVLHPQLIEALSNTNIEF-----VACGEYHTCAVTLSG-DLYTWGDGTYNFGLLGHG 404
Query: 281 KTIDFFAPAIVLWP 294
+ + P V P
Sbjct: 405 NEVSHWVPKRVNGP 418
>gi|340501848|gb|EGR28585.1| regulator of chromosome condensation, putative [Ichthyophthirius
multifiliis]
Length = 612
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 123/274 (44%), Gaps = 38/274 (13%)
Query: 18 DNAGALWMWG--------NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHV 69
D G L+ WG N P ++ + +F P V+ +++V+CG +H
Sbjct: 128 DAIGVLYSWGQNTEGQMGNVYDPKTNNPKHRKIKINF-PKLVYPLKDSIIIQVSCGYQHS 186
Query: 70 VALVSAGETYKGEDLVCYSWGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTC 127
VA+ T+ G LV WG N++ QLGLG S P I + V+C
Sbjct: 187 VAI-----TFNGNVLV---WGDNSSSQLGLGINSPNSIYYPVQIPNIQN-----IINVSC 233
Query: 128 GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVD 187
GS HT L +R + +++G GE G LGH + P+ + + Q + + +
Sbjct: 234 GSEHTLALDNRNQ--------VYSWGNGEGGLLGHSNEEIQASPKIIDKF-QDLQVEFII 284
Query: 188 CGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV 247
CG H+ ++ G V+SWG +G L N + ++ P I G G +
Sbjct: 285 CGGLHSLALTKKGHVYSWGRNEGGQLGLNQDVLKDNLYFCCLPEKICGQ-LEGVFVK--- 340
Query: 248 QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
Q+A G AH++ + +G +++ WG +G LG G+
Sbjct: 341 QIAAGDAHSLALAQNG-QVFGWGYNINGQLGLGQ 373
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 98/214 (45%), Gaps = 34/214 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS-SFTPSPVWDFHGHTVV 60
S I V G S+AI G + +WG+ +SS++ G + S + PV + ++
Sbjct: 174 SIIIQVSCGYQHSVAITFNGNVLVWGD----NSSSQLGLGINSPNSIYYPVQIPNIQNII 229
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V+CGSEH +AL + + YSWG G LG + E + PKII+ F QD
Sbjct: 230 NVSCGSEHTLALDNRNQV--------YSWGNGEGGLLGHSNEEIQASPKIIDKF-QD--L 278
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL--------VPE 172
V + CG H+ LT + +++G E GQL G Q L +PE
Sbjct: 279 QVEFIICGGLHSLALTKK--------GHVYSWGRNEGGQL--GLNQDVLKDNLYFCCLPE 328
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
++ + V++ + G H+ ++ G V+ WG
Sbjct: 329 KICGQLEGVFVKQIAAGDAHSLALAQNGQVFGWG 362
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 98/214 (45%), Gaps = 44/214 (20%)
Query: 85 VCYSWGANNNGQLGL-------GDRESRLR---PKIIETFNQDSPWAVYEVTCGSFHTAL 134
V YSWG N GQ+G + +++ PK++ +DS + +V+CG H+
Sbjct: 132 VLYSWGQNTEGQMGNVYDPKTNNPKHRKIKINFPKLVYPL-KDS--IIIQVSCGYQHSVA 188
Query: 135 LTHRKRPNDMLESMCWTFGLGENGQLGHGTT--QSALVPEQVKELPQYVYLVSVDCGLFH 192
+T +G + QLG G S P Q+ P +++V CG H
Sbjct: 189 IT--------FNGNVLVWGDNSSSQLGLGINSPNSIYYPVQI---PNIQNIINVSCGSEH 237
Query: 193 TSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA-- 250
T + + V+SWG +G GL ++ NE A SP +I KFQD +QV
Sbjct: 238 TLALDNRNQVYSWGNGEG-GLLGHS----NEEIQA-SPKIID-------KFQD-LQVEFI 283
Query: 251 -CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
CG H++ +T G+ ++SWGR G LG + +
Sbjct: 284 ICGGLHSLALTKKGH-VYSWGRNEGGQLGLNQDV 316
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 122/314 (38%), Gaps = 71/314 (22%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHG 56
+ I +V G +LA+DN ++ WGN EGG S+ +P + F
Sbjct: 225 IQNIINVSCGSEHTLALDNRNQVYSWGN-------GEGGLLGHSNEEIQASPKIIDKFQD 277
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII----- 111
V + CG H +AL G YSWG N GQLGL + L+ +
Sbjct: 278 LQVEFIICGGLHSLALTKKGHV--------YSWGRNEGGQLGL--NQDVLKDNLYFCCLP 327
Query: 112 -ETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS--- 167
+ Q V ++ G H+ L + + +G NGQLG G QS
Sbjct: 328 EKICGQLEGVFVKQIAAGDAHSLALAQNGQ--------VFGWGYNINGQLGLGQQQSDKQ 379
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA--G 225
P+Q+K L + + CGL D G+EK L T N++
Sbjct: 380 VSEPKQIKNLQKIEKVFC--CGL---------NDQNQLGIEK---LPIKIQNTHNQSILN 425
Query: 226 DAISPI--------LISGNGPHGPK-----FQDPV-QVACGAAHT---VLVTDDGYKLWS 268
I+ I + N + PK +Q PV ++CG H+ VL Y +++
Sbjct: 426 QNINIIDQYKANDNSKNNNNIYIPKRMDCFYQMPVLHLSCGHNHSLAFVLADTKHYMVFA 485
Query: 269 WGRGRSGVLGTGKT 282
WG + G LG G T
Sbjct: 486 WGMNKHGQLGIGDT 499
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD---R 102
+ P + F+ V+ ++CG H +A V A + + ++WG N +GQLG+GD
Sbjct: 447 YIPKRMDCFYQMPVLHLSCGHNHSLAFVLADTKH----YMVFAWGMNKHGQLGIGDTGQN 502
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
S RP T+ QD Y + CGS+H+ L+ +
Sbjct: 503 SSMARPI---TYLQD--IIAYSMACGSYHSLLIIN 532
>gi|325180310|emb|CCA14713.1| regulator of chromosome condensation (RCC1)like protein putative
[Albugo laibachii Nc14]
Length = 393
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 102/218 (46%), Gaps = 29/218 (13%)
Query: 85 VCYSWGANNNGQLGLGDRES--------RLRPKIIETFNQDSPWAVYEVTCGSFHTALLT 136
++WG GQLG G E L P+I+ETF + + ++ G+ H+A +
Sbjct: 6 TVFTWGTGTQGQLGHGSFEKTGIRSSYEELSPRILETFEGKN---IAKLDFGATHSAAID 62
Query: 137 HRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL--VPEQVKELPQYVYLVSVDCGLFHTS 194
E +T+G E QLGHG++ + +P V L + + +V + CG +HT
Sbjct: 63 K--------EGKLYTWGSNEYHQLGHGSSNQDIQSIPRVVDAL-RGIKIVDISCGEYHTG 113
Query: 195 VVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ-VACGA 253
V G +++WG G + + +L D P L+ G PV+ V CG
Sbjct: 114 AVDEEGKLFTWGW-GGSTMKGSGALGHAGGEDESIPRLVRTLVDQGV----PVKSVECGE 168
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HTV +T DG ++W+WG G G LG G + +F P V
Sbjct: 169 LHTVALTKDG-EIWAWGNGEYGRLGNGASDNFEVPEPV 205
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 113/272 (41%), Gaps = 28/272 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
I + G S AID G L+ WG+ + S P V G +V +
Sbjct: 47 NIAKLDFGATHSAAIDKEGKLYTWGSNEYHQLGHGSSNQDIQSI-PRVVDALRGIKIVDI 105
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANN---NGQLGLGDRESRLRPKIIETF-NQDS 118
+CG H A+ G+ L + WG + +G LG E P+++ T +Q
Sbjct: 106 SCGEYHTGAVDEEGK------LFTWGWGGSTMKGSGALGHAGGEDESIPRLVRTLVDQGV 159
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P V V CG HT LT + W +G GE G+LG+G + + VPE V+
Sbjct: 160 P--VKSVECGELHTVALTK--------DGEIWAWGNGEYGRLGNGASDNFEVPEPVEYFA 209
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ S+ G T ++ G+V+SWG+ L LT + P+++
Sbjct: 210 DE-NIASISAGRDFTFAITEHGEVYSWGINSHSQLGLGGGLTVDYYNMETIPVVVE---- 264
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG 270
+ QV+ G H VT+DG K++ WG
Sbjct: 265 -ALSNVNVAQVSAGYDHAAAVTNDG-KMFMWG 294
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 108/249 (43%), Gaps = 37/249 (14%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
+P + F G + K+ G+ H A+ G+ Y+WG+N QLG G
Sbjct: 35 LSPRILETFEGKNIAKLDFGATHSAAIDKEGK--------LYTWGSNEYHQLGHGSSNQD 86
Query: 106 LR--PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFG---LGENGQL 160
++ P++++ + +++CG +HT + + W +G + +G L
Sbjct: 87 IQSIPRVVDALR---GIKIVDISCGEYHTGAVDEEGKL------FTWGWGGSTMKGSGAL 137
Query: 161 GHGTTQSALVPEQVKEL-PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
GH + +P V+ L Q V + SV+CG HT ++ G++W+WG + G N +
Sbjct: 138 GHAGGEDESIPRLVRTLVDQGVPVKSVECGELHTVALTKDGEIWAWGNGE-YGRLGNGAS 196
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
E + + ++ ++ G T +T+ G +++SWG LG
Sbjct: 197 DNFEVPEPVEYF----------ADENIASISAGRDFTFAITEHG-EVYSWGINSHSQLGL 245
Query: 280 GK--TIDFF 286
G T+D++
Sbjct: 246 GGGLTVDYY 254
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 111/263 (42%), Gaps = 51/263 (19%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ SV+ G + ++A+ G +W WGN + G + + P PV F + ++
Sbjct: 161 VKSVECGELHTVALTKDGEIWAWGN---GEYGRLGNGASDNFEVPEPVEYFADENIASIS 217
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD------RESRLRPKIIETFNQD 117
G + A+ GE YSWG N++ QLGLG P ++E +
Sbjct: 218 AGRDFTFAITEHGE--------VYSWGINSHSQLGLGGGLTVDYYNMETIPVVVEALSNV 269
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ V +V+ G H A +T+ + M + W L P ++ L
Sbjct: 270 N---VAQVSAGYDHAAAVTNDGKMF-MWGAKLW------------------LEPHEMTIL 307
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++SV CG ++T+ +S++G+++++G KG C L E + P+L+
Sbjct: 308 KDET-IISVQCGRYYTAALSASGNLFTFG--KGHSNC----LGHGERKTQLQPLLVESLN 360
Query: 238 PHGPKFQDPVQVACGAAHTVLVT 260
+ + V + CG +H +T
Sbjct: 361 RY-----NVVSMTCGYSHMGALT 378
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 17/142 (11%)
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY-------LVSVDCGLFHTSVVSS 198
+S +T+G G GQLGHG+ + + +EL + + +D G H++ +
Sbjct: 4 QSTVFTWGTGTQGQLGHGSFEKTGIRSSYEELSPRILETFEGKNIAKLDFGATHSAAIDK 63
Query: 199 AGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVL 258
G +++WG + L +S N+ +I ++ + G K D ++CG HT
Sbjct: 64 EGKLYTWGSNEYHQLGHGSS---NQDIQSIPRVV---DALRGIKIVD---ISCGEYHTGA 114
Query: 259 VTDDGYKLWSWGRGRSGVLGTG 280
V ++G KL++WG G S + G+G
Sbjct: 115 VDEEG-KLFTWGWGGSTMKGSG 135
>gi|221108961|ref|XP_002157481.1| PREDICTED: regulator of chromosome condensation-like [Hydra
magnipapillata]
Length = 441
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 144/327 (44%), Gaps = 60/327 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPS------PVWDFHG 56
++ AG S A+ + G ++ WG D+S + G + S + P D
Sbjct: 128 RVVYASAGDSHSAALTDDGRVFAWG--AYRDASGQIGLTAASIGKKNEVIKIYPKGDQID 185
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG-----LGDRESR------ 105
VKV G++H V L S G + Y+ G GQLG G R R
Sbjct: 186 DPAVKVVSGNDHTVILTSEG--------LIYTSGTGEQGQLGRIKECFGHRGGRRGLEII 237
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
L P+++ F + ++ ++ GSF T L+ + ND+ + +GL GQLG GTT
Sbjct: 238 LSPQVVR-FRKKQFFS--DIFAGSFCTFALS--RDTNDV-----YAWGLNNYGQLGSGTT 287
Query: 166 QSALVPEQVKELPQYV-----YLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNAS 218
++ PE ++ L + YL + G H+ V G +S G E G LGL +A
Sbjct: 288 ENFFNPEVIQSLSEIREHANGYL-QIHGGQHHSIVADGNGKTYSIGRSEYGRLGLGKDAK 346
Query: 219 LTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
T P I + ++ V++ACG A + VTD G+ L+SWG G S LG
Sbjct: 347 ETS-------LPKKIDS-----LEKENVVKIACGEAVSFAVTDKGH-LYSWGLGTSLQLG 393
Query: 279 TGKTIDFFAPAIVLWPPLTEEFKQDEL 305
G D F P++V LT QDE+
Sbjct: 394 VGDDEDIFDPSLVQSNNLT--LAQDEV 418
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 106/263 (40%), Gaps = 30/263 (11%)
Query: 39 GFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG 98
G +++ P+ + + G ++V CG H + + GE YSWG N++G LG
Sbjct: 54 GENVLERKRPAMIKEVEGVNFIQVTCGGMHTIGVSEHGE--------VYSWGCNDDGALG 105
Query: 99 L----GDRESRLRPKIIETFNQDSPWAVYEV--TCGSFHTALLTHRKRPNDMLESMCWTF 152
D E + K++ P + V + G H+A LT R W
Sbjct: 106 RPTEGTDGEEFIPRKVL------LPQGIRVVYASAGDSHSAALTDDGRV------FAWGA 153
Query: 153 GLGENGQLGHGTTQSALVPEQVKELPQYVYL----VSVDCGLFHTSVVSSAGDVWSWGME 208
+GQ+G E +K P+ + V V G HT +++S G +++ G
Sbjct: 154 YRDASGQIGLTAASIGKKNEVIKIYPKGDQIDDPAVKVVSGNDHTVILTSEGLIYTSGTG 213
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L + G I++S K Q + G+ T ++ D +++
Sbjct: 214 EQGQLGRIKECFGHRGGRRGLEIILSPQVVRFRKKQFFSDIFAGSFCTFALSRDTNDVYA 273
Query: 269 WGRGRSGVLGTGKTIDFFAPAIV 291
WG G LG+G T +FF P ++
Sbjct: 274 WGLNNYGQLGSGTTENFFNPEVI 296
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 21/178 (11%)
Query: 86 CYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA--VYEVTCGSFHTALLTHRKRPND 143
Y+WG NN GQLG G E+ P++I++ ++ A ++ G H+ + +
Sbjct: 271 VYAWGLNNYGQLGSGTTENFFNPEVIQSLSEIREHANGYLQIHGGQHHSIVADGNGK--- 327
Query: 144 MLESMCWTFGLGENGQLGHGT-TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV 202
++ G E G+LG G + +P+++ L + +V + CG + V+ G +
Sbjct: 328 -----TYSIGRSEYGRLGLGKDAKETSLPKKIDSLEKE-NVVKIACGEAVSFAVTDKGHL 381
Query: 203 WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV-QVACGAAHTVLV 259
+SWG+ L L + D P L+ N QD V V+ G HT ++
Sbjct: 382 YSWGLGTSL------QLGVGDDEDIFDPSLVQSNNL--TLAQDEVLAVSAGGQHTAIL 431
>gi|355749434|gb|EHH53833.1| Putative E3 ubiquitin-protein ligase HERC6 [Macaca fascicularis]
Length = 1020
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 112/246 (45%), Gaps = 31/246 (12%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRL 106
P P+ V V+CG EH +A+ G ++WGA + GQLG+G+ +E
Sbjct: 66 PEPIQALETLNVDLVSCGKEHSLAVCHKGRV--------FAWGAGSEGQLGIGEFKEISF 117
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-T 165
PK I T N + +V+CG +H+ L+ +S +++G +GQLG G
Sbjct: 118 TPKKITTLNG---IKIIQVSCGHYHSLALSK--------DSQVFSWGKNSHGQLGLGKEV 166
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
S P++V+ L + + L V G H+ +S G + WG L + RN
Sbjct: 167 PSQASPQRVRSL-EGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSG---RNVPV 222
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ P+ I G + ++CG HT ++ DG K++++G SG LG T +
Sbjct: 223 QSNKPLSIGALKNLG-----VIYISCGDEHTAVLIQDG-KVFTFGDNSSGQLGYSPTPEK 276
Query: 286 FAPAIV 291
P +V
Sbjct: 277 RGPQLV 282
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 62/284 (21%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHTVVKV 62
V G SLA+ + G ++ WG + +EG + SFTP + +G +++V
Sbjct: 80 VSCGKEHSLAVCHKGRVFAWG------AGSEGQLGIGEFKEISFTPKKITTLNGIKIIQV 133
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWA 121
+CG H +AL +D +SWG N++GQLGLG S+ P+ + + + P A
Sbjct: 134 SCGHYHSLAL--------SKDSQVFSWGKNSHGQLGLGKEVPSQASPQRVRSL-EGIPLA 184
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWT-FGLGEN--GQL---GHGTTQSALVPEQVK 175
+V G H+ L S+C T FG G N GQL G + P +
Sbjct: 185 --QVAAGGAHSFAL-----------SLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSIG 231
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L + + ++ + CG HT+V+ G V+++G N+S + G + +P
Sbjct: 232 AL-KNLGVIYISCGDEHTAVLIQDGKVFTFG--------DNSS---GQLGYSPTP----- 274
Query: 236 NGPHGPKFQDPV-----QVACGAAHTVLVTDDGYKLWSWGRGRS 274
GP+ + + Q+ CG+ HT+ ++ S+G G S
Sbjct: 275 -EKRGPQLVERIDGLVSQIDCGSYHTLAYVHTTGQVISFGHGPS 317
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ G + WG+ + G V S P + V+ ++
Sbjct: 183 LAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSIGALKNLGVIYIS 242
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG EH L+ G+ +++G N++GQLG + P+++E + V
Sbjct: 243 CGDEHTAVLIQDGKV--------FTFGDNSSGQLGYSPTPEKRGPQLVERID----GLVS 290
Query: 124 EVTCGSFHTALLTH 137
++ CGS+HT H
Sbjct: 291 QIDCGSYHTLAYVH 304
>gi|115485835|ref|NP_001068061.1| Os11g0545800 [Oryza sativa Japonica Group]
gi|113645283|dbj|BAF28424.1| Os11g0545800, partial [Oryza sativa Japonica Group]
Length = 400
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 131/314 (41%), Gaps = 66/314 (21%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFS-----LVSSFTPSPVWDFHGH 57
++ V AG S A+ G L+ WG +SS + G +VS TP V
Sbjct: 101 KVVEVSAGNHHSCAVTADGKLFAWGR----NSSGQLGLGKRAGKVVS--TPRKVDCLADA 154
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL---------RP 108
V VA GSEH +A GE SWGA G+LG G + S L P
Sbjct: 155 RVKMVALGSEHSIATTEEGEVL--------SWGAAGAGRLGHGHKTSILGFSITTSEYTP 206
Query: 109 KIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA 168
++I+ + + + G H+A + + F G+ + G G +
Sbjct: 207 RLIKNLDG---VKIKRIAAGMLHSACIDEKGT----------LFIFGQKTEKGFGRSGDE 253
Query: 169 LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
L P V+E+P + V CG +HT VV+ +GD++SWG + N L
Sbjct: 254 LRPTVVEEVP---FSEEVACGGYHTCVVTDSGDLYSWGSNE------NGCLGLGGTDMVR 304
Query: 229 SPILISGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWSWG--------RGRS--GVL 277
SP ++ + F+ PV +V+CG HT +++ W WG G S G L
Sbjct: 305 SPEVLKSS-----LFKFPVSKVSCGWKHTAVISGGDIYTWGWGGANGTFFEEGHSSGGQL 359
Query: 278 GTGKTIDFFAPAIV 291
G G +D+F P +V
Sbjct: 360 GHGNDVDYFEPMMV 373
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 85/198 (42%), Gaps = 23/198 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS-SFTPSPVWDFHGHTVVK 61
+I + AG + S ID G L+++G TE GF P+ V + +
Sbjct: 216 KIKRIAAGMLHSACIDEKGTLFIFGQ------KTEKGFGRSGDELRPTVVEEVP--FSEE 267
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VACG H + +G+ YSWG+N NG LGLG + P+++++ P
Sbjct: 268 VACGGYHTCVVTDSGD--------LYSWGSNENGCLGLGGTDMVRSPEVLKSSLFKFP-- 317
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTF---GLGENGQLGHGTTQSALVPEQVKELP 178
V +V+CG HTA+++ TF G GQLGHG P V E
Sbjct: 318 VSKVSCGWKHTAVISGGDIYTWGWGGANGTFFEEGHSSGGQLGHGNDVDYFEPMMV-EFG 376
Query: 179 QYVYLVSVDCGLFHTSVV 196
+ V V CG HT +
Sbjct: 377 KNARAVHVSCGFNHTGAI 394
>gi|357460713|ref|XP_003600638.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
gi|355489686|gb|AES70889.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
Length = 1032
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 32/294 (10%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ +V G + A+ ++G ++ WGN + G T G ++ +
Sbjct: 357 RVKNVACGEYHTCALTDSGEVYAWGNDVSCSDLVDEGRIRSQWLTHKLSLPVEGISISSI 416
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG H + S G + ++G G LG G S PK +E+ V
Sbjct: 417 ACGEWHTAIVSSCGRLF--------TYGDGTFGVLGHGSYHSFSSPKEVESLK---GLCV 465
Query: 123 YEVTCGSFHTALL----THRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V CG++HTA + R + N + +T+G + G+LGH + LVP V +L
Sbjct: 466 RSVACGTWHTAAIIEISAERFKYNTSTGKL-FTWGDADEGRLGHADNVNKLVPTCVSQLV 524
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
Y + V V CG T +++ G V++ G K L D +
Sbjct: 525 DYDF-VQVSCGRMMTLALTNMGKVFAMGSAK------YGQLGNPHVKDRAVVV------- 570
Query: 239 HGPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G Q+ V+ ++CG+ H ++T G +++WG+G +G LG G T + + P V
Sbjct: 571 EGMLKQEYVKMISCGSYHVAVLTSSG-SVYTWGKGENGELGLGDTENRYTPCFV 623
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
V G MM+LA+ N G ++ G+ L + + +V V ++
Sbjct: 531 VSCGRMMTLALTNMGKVFAMGSAKYGQLGNPHVKDRAVVVEGM-------LKQEYVKMIS 583
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CGS HV L S+G Y +WG NG+LGLGD E+R P +E V
Sbjct: 584 CGSYHVAVLTSSGSVY--------TWGKGENGELGLGDTENRYTPCFVEALRDRQ---VD 632
Query: 124 EVTCG-SFHTALLTHR 138
+TCG SF A+ H+
Sbjct: 633 TITCGPSFTVAICLHK 648
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 23/159 (14%)
Query: 19 NAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGET 78
+ G L+ WG+ D G V+ P+ V + V+V+CG +AL + G+
Sbjct: 491 STGKLFTWGD---ADEGRLGHADNVNKLVPTCVSQLVDYDFVQVSCGRMMTLALTNMGKV 547
Query: 79 YKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
+ + G+ GQLG + + R ++E + V ++CGS+H A+LT
Sbjct: 548 F--------AMGSAKYGQLG--NPHVKDRAVVVEGMLKQE--YVKMISCGSYHVAVLTS- 594
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+T+G GENG+LG G T++ P V+ L
Sbjct: 595 -------SGSVYTWGKGENGELGLGDTENRYTPCFVEAL 626
>gi|297603670|ref|NP_001054420.2| Os05g0106700 [Oryza sativa Japonica Group]
gi|255675937|dbj|BAF16334.2| Os05g0106700 [Oryza sativa Japonica Group]
Length = 685
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 123/290 (42%), Gaps = 44/290 (15%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSS------FTPSPVWDFHGHTVVKVACGSEHVVA 71
D+ G +++WG +S G +++ S P P+ V V CG H
Sbjct: 32 DSLGDVYVWGEVFCENSVRVGSDTIIRSTEKTDFLLPKPLESRLVLDVYHVDCGVRHAAL 91
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
+ G+ + +WG ++ G+LG G RE + P+++E+ + V V CG FH
Sbjct: 92 VTRNGDVF--------TWGEDSGGRLGHGTREDSVHPRLVESL---AACNVDFVACGEFH 140
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF 191
T +T E W G G LGHGT +P+++ + + V CG +
Sbjct: 141 TCAVTTTG------ELYTWGDGTHNVGLLGHGTDAGHWIPKRISGALDGLPVAYVSCGTW 194
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
HT++++S G ++++G + G+ + +LT + +SG + VAC
Sbjct: 195 HTALITSMGQLFTFG-DGSFGVLGHGNLTSISCPKEVES--LSG--------LKTIAVAC 243
Query: 252 GAAHT-----VLVTDDGY-----KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G HT V+VT KL++WG G LG G P V
Sbjct: 244 GVWHTAAIVEVIVTHSSSSVSAGKLFTWGDGDKHRLGHGDKESRLKPTCV 293
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 128/298 (42%), Gaps = 47/298 (15%)
Query: 7 VKAGGMMSLAIDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
V G + A+ G L+ WG N L T+ G + + + G V V
Sbjct: 134 VACGEFHTCAVTTTGELYTWGDGTHNVGLLGHGTDAGHWIPKRISGA----LDGLPVAYV 189
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+CG+ H + S G+ + ++G + G LG G+ S PK +E+ S
Sbjct: 190 SCGTWHTALITSMGQLF--------TFGDGSFGVLGHGNLTSISCPKEVESL---SGLKT 238
Query: 123 YEVTCGSFHTA-----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V CG +HTA ++TH + + +T+G G+ +LGHG +S L P V L
Sbjct: 239 IAVACGVWHTAAIVEVIVTHSS--SSVSAGKLFTWGDGDKHRLGHGDKESRLKPTCVASL 296
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISG 235
Y + V CG T ++++G V S G + LG N D P L+
Sbjct: 297 IDYDFY-RVACGHSLTVCLTTSGKVLSMGNSVYGQLG---------NPNSDGRLPCLVED 346
Query: 236 N--GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G H +QVACG+ H ++T ++++WG+G +G LG G D P V
Sbjct: 347 RIAGEH------VLQVACGSYHVAVLTGRS-EVFTWGKGANGRLGHGDIEDRKVPTQV 397
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 107/256 (41%), Gaps = 29/256 (11%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
V G + I + G L+ +G+ G +L S P V G + VACG
Sbjct: 189 VSCGTWHTALITSMGQLFTFGDGSF---GVLGHGNLTSISCPKEVESLSGLKTIAVACGV 245
Query: 67 EHVVALVSAGETYKGEDLVC---YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
H A+V T+ + ++WG + +LG GD+ESRL+P + + + Y
Sbjct: 246 WHTAAIVEVIVTHSSSSVSAGKLFTWGDGDKHRLGHGDKESRLKPTCVASLID---YDFY 302
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
V CG T LT + M S+ GQLG+ + L P V++ ++
Sbjct: 303 RVACGHSLTVCLTTSGKVLSMGNSV--------YGQLGNPNSDGRL-PCLVEDRIAGEHV 353
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+ V CG +H +V++ +V++WG KG N L + D P + K
Sbjct: 354 LQVACGSYHVAVLTGRSEVFTWG--KG----ANGRLGHGDIEDRKVPTQV-----EALKD 402
Query: 244 QDPVQVACGAAHTVLV 259
+ +ACGA T +
Sbjct: 403 RAVRHIACGANFTAAI 418
>gi|260781262|ref|XP_002585738.1| hypothetical protein BRAFLDRAFT_111359 [Branchiostoma floridae]
gi|229270775|gb|EEN41749.1| hypothetical protein BRAFLDRAFT_111359 [Branchiostoma floridae]
Length = 403
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 117/259 (45%), Gaps = 49/259 (18%)
Query: 36 TEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNG 95
TEG LV+ F P +G V +ACG+ H + + E Y +WG ++G
Sbjct: 88 TEG---LVAEFPPK-----NGARVKLLACGASHSIVVTVDNEVY--------AWGNGHSG 131
Query: 96 QLGLGDRESRLRPKIIE-TFNQDSPWAVYEVTCGSFHT-ALLTHRKRPNDMLESMCWTFG 153
QLG GD+E+RL P I T NQD P V +TCGS H+ A LT+ K C++FG
Sbjct: 132 QLGCGDKETRLAPTRIHLTDNQDLP-DVAGITCGSRHSFAWLTNGK---------CYSFG 181
Query: 154 LGENGQLGHGTTQSALVPEQVKE--LPQYVY--LVSVDCGLFHTSVVSSAGDVWSWGMEK 209
QL + Q++ L +V+ +V V CG HT ++ G V + G
Sbjct: 182 NNYYAQLAYNFRIQNYKENQLRPTLLEMFVHRKVVHVACGDRHTLFLTQEGRVAACGNNA 241
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
N L E D + P ++ G + +ACG+ H++ T G L+ W
Sbjct: 242 ------NGQLGTGEPSDMVCPKMLDG-------LEGVSCIACGSYHSLAATGAG-DLYVW 287
Query: 270 GRGRSGVLGTGKTIDFFAP 288
G G+ GT K D AP
Sbjct: 288 GSGKP--CGTRKG-DILAP 303
>gi|356499563|ref|XP_003518608.1| PREDICTED: uncharacterized protein LOC100805364 [Glycine max]
Length = 1120
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 134/295 (45%), Gaps = 41/295 (13%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTVVKVACG 65
V G S A+ AG L+ WG+ + ++ G S VS + P + G + VACG
Sbjct: 335 VACGEFHSCAVTMAGELYTWGDG-MHNAGLLGHGSNVSHWIPKRIAGPLEGLQIAFVACG 393
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + S G+ +++G G LG GDR++ P+ +E+ V
Sbjct: 394 PWHTALITSTGQ--------LFTFGDGTFGVLGHGDRQNVSYPREVESL---LGLRTIAV 442
Query: 126 TCGSFHTA-----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
CG +HTA + TH + +T+G G+ +LGHG ++ L P V L Y
Sbjct: 443 ACGVWHTAAVVEVIATHSG--TSISSGKLFTWGDGDKNRLGHGDKEARLKPTCVSALIDY 500
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS----PILISGN 236
+ + CG T ++++G V++ G S + G ++S P L+ G+
Sbjct: 501 NFH-KIACGHSLTVGLTTSGRVFTMG-----------STVYGQLGSSLSDGKVPCLV-GD 547
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G + ++ACGA H ++T ++++WG+G +G LG G D PA+V
Sbjct: 548 KIAGESIE---EIACGAYHVAVLTSKN-EVYTWGKGANGRLGHGDIEDRKTPALV 598
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 123/305 (40%), Gaps = 67/305 (21%)
Query: 16 AIDNAGALW---MWGNCPLPDSSTEGGFSLVSSFTPSP------------VWDFHGHTVV 60
A D+ ALW +WG + G V+ F+P V D H
Sbjct: 228 APDDYDALWDVYIWGEVTCENVKV-GADKNVNYFSPRADVLLPRPLESNVVLDVH----- 281
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+ACG H + GE + +WG + G+LG G ++ ++P+++E +
Sbjct: 282 HIACGVRHASLVTRQGEVF--------TWGEESGGRLGHGVGKNVVQPRLVEALISTT-- 331
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ V CG FH+ +T E W G+ G LGHG+ S +P+++ +
Sbjct: 332 -IDFVACGEFHSCAVTMAG------ELYTWGDGMHNAGLLGHGSNVSHWIPKRIAGPLEG 384
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGN 236
+ + V CG +HT++++S G ++++G G G N S R + +L
Sbjct: 385 LQIAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGDRQNVSYPRE-----VESLL---- 435
Query: 237 GPHGPKFQDPVQVACGAAHT-----VLVTDDGY-----KLWSWGRGRSGVLGTGKTIDFF 286
+ VACG HT V+ T G KL++WG G LG G
Sbjct: 436 ------GLRTIAVACGVWHTAAVVEVIATHSGTSISSGKLFTWGDGDKNRLGHGDKEARL 489
Query: 287 APAIV 291
P V
Sbjct: 490 KPTCV 494
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 111/266 (41%), Gaps = 41/266 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
QI V G + I + G L+ +G +G F ++ + P V G
Sbjct: 386 QIAFVACGPWHTALITSTGQLFTFG---------DGTFGVLGHGDRQNVSYPREVESLLG 436
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVC---YSWGANNNGQLGLGDRESRLRPKIIET 113
+ VACG H A+V T+ G + ++WG + +LG GD+E+RL+P +
Sbjct: 437 LRTIAVACGVWHTAAVVEVIATHSGTSISSGKLFTWGDGDKNRLGHGDKEARLKPTCVSA 496
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
+ +++ CG T LT R +T G GQLG + VP
Sbjct: 497 LID---YNFHKIACGHSLTVGLTTSGR--------VFTMGSTVYGQLG-SSLSDGKVPCL 544
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
V + + + CG +H +V++S +V++WG KG N L + D +P L+
Sbjct: 545 VGDKIAGESIEEIACGAYHVAVLTSKNEVYTWG--KGA----NGRLGHGDIEDRKTPALV 598
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLV 259
K+ +ACG+ ++ +
Sbjct: 599 EALKDRHVKY-----IACGSNYSAAI 619
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 39 GFSLVSSFTPSPVWD-FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQL 97
G SL P V D G ++ ++ACG+ HV L S E Y +WG NG+L
Sbjct: 533 GSSLSDGKVPCLVGDKIAGESIEEIACGAYHVAVLTSKNEVY--------TWGKGANGRL 584
Query: 98 GLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWT 151
G GD E R P ++E V + CGS ++A + K + +S C T
Sbjct: 585 GHGDIEDRKTPALVEALKDRH---VKYIACGSNYSAAICLHKWVSGAEQSQCST 635
>gi|326436402|gb|EGD81972.1| hypothetical protein PTSG_02656 [Salpingoeca sp. ATCC 50818]
Length = 5125
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 53/260 (20%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
SS P P V++VACG H A+ + G+ Y WG N++G+LGLGD+
Sbjct: 3187 SSLVPVPGL----RDVLRVACGRRHSAAVTATGQ--------LYMWGCNHHGRLGLGDQN 3234
Query: 104 SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
R P ++ V V CG HT +LT R ++FG G+ G+LG
Sbjct: 3235 DRYEPTLVPNLP-----PVQMVACGDRHTLVLTQR--------GGVYSFGCGDQGRLG-- 3279
Query: 164 TTQSALVPEQVKELPQYVYL-------VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPN 216
+PE +L + L V CG ++ ++ G ++ WG + L
Sbjct: 3280 ------IPEAPHKLLRPAKLDFGRARMTRVICGCNSSAALTDTGQLYVWGTGRSYRLG-T 3332
Query: 217 ASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGV 276
S+T + + PI ++ H V + G H V V++ G ++ WG S
Sbjct: 3333 GSMTSH-----MLPIRVTDLASH-----KIVDASLGHEHGVAVSETG-DVFVWGSNDSSQ 3381
Query: 277 LGTGKTIDFFAPAIVLWPPL 296
LG G T D AP +L P L
Sbjct: 3382 LG-GATADAAAPRPLLHPEL 3400
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 111/236 (47%), Gaps = 35/236 (14%)
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
+HV+AL + GE YSWG+N+ QLG D + + KI F + S + V
Sbjct: 140 DHVLALTTRGE--------VYSWGSNSYAQLGRND-DPIVPTKITRGFGRSS---IVYVA 187
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL-PQYVYLVS 185
G H+A ++ + + +T+G G G+LGHGT+ P+ V L + + + +
Sbjct: 188 VGGQHSAAVSE--------DGVLYTWGRGSYGRLGHGTSDDVAFPQPVLALKSKDILIAT 239
Query: 186 VDCGL--FHTSVVSSAGDVWSWGM-EKGLGLCPNASLTRNEAGDAIS-----PILISGNG 237
V CG+ HT +S G ++++G + G G P + G + P+ I +
Sbjct: 240 VACGIGDAHTLALSRDGVIYAFGDGDYGWGPAPATGGASGKLGLGSTERTRVPVAIPCDF 299
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFF-APAIVL 292
G K + QV CG + +T+ G L++WG G LG G++ +PA +L
Sbjct: 300 -DGTKVK---QVWCGRQISACLTEGG-ALYTWGNASGGALGNGESYGAVESPARIL 350
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 89/212 (41%), Gaps = 37/212 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMW-----GNCPLPDSSTEGGFSLVSSFTPSPVWDFH 55
+ + V G S A+ G L+MW G L D + +LV + P
Sbjct: 3195 LRDVLRVACGRRHSAAVTATGQLYMWGCNHHGRLGLGDQNDRYEPTLVPNLPP------- 3247
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR-LRPKIIETF 114
V VACG H + L G YS+G + G+LG+ + + LRP ++ F
Sbjct: 3248 ---VQMVACGDRHTLVLTQRGG--------VYSFGCGDQGRLGIPEAPHKLLRPAKLD-F 3295
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
+ + V CG +A LT D + W G G + +LG G+ S ++P +V
Sbjct: 3296 GRAR---MTRVICGCNSSAALT------DTGQLYVW--GTGRSYRLGTGSMTSHMLPIRV 3344
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+L + +V G H VS GDV+ WG
Sbjct: 3345 TDLASH-KIVDASLGHEHGVAVSETGDVFVWG 3375
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ W+ G + LGH LV E ++V + ++D H +++ G+V+SWG
Sbjct: 102 TFLWSCGPPTSRLLGHEGHTLKLVSGLENE--RFVQVAAID----HVLALTTRGEVYSWG 155
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
A L RN+ D I P I+ G V VA G H+ V++DG L
Sbjct: 156 SNS------YAQLGRND--DPIVPTKIT----RGFGRSSIVYVAVGGQHSAAVSEDGV-L 202
Query: 267 WSWGRGRSGVLGTGKTIDFFAPAIVL 292
++WGRG G LG G + D P VL
Sbjct: 203 YTWGRGSYGRLGHGTSDDVAFPQPVL 228
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 86/218 (39%), Gaps = 39/218 (17%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT------PSPVWDFH 55
S I V GG S A+ G L+ WG G + + T P PV
Sbjct: 181 SSIVYVAVGGQHSAAVSEDGVLYTWG---------RGSYGRLGHGTSDDVAFPQPVLALK 231
Query: 56 GHTVV--KVAC--GSEHVVALVSAGETYKGEDLVCYSWG-----ANNNGQLGLGDRESRL 106
++ VAC G H +AL G Y D Y WG +G+LGLG E R
Sbjct: 232 SKDILIATVACGIGDAHTLALSRDGVIYAFGD-GDYGWGPAPATGGASGKLGLGSTE-RT 289
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
R + + D V +V CG +A LT +T+G G LG+G +
Sbjct: 290 RVPVAIPCDFDG-TKVKQVWCGRQISACLTE--------GGALYTWGNASGGALGNGESY 340
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
A V + L +V + SV G H ++ S GDV S
Sbjct: 341 GA-VESPARILADHV-IKSVTAGPSHIALWS--GDVRS 374
>gi|449270679|gb|EMC81336.1| putative E3 ubiquitin-protein ligase HERC3 [Columba livia]
Length = 1050
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 137/297 (46%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L + P + + T
Sbjct: 85 HIVHVACGESHSLALSDQGQLFSWG------AGSDGQLGLTTIEDAVTVPRLIKKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N+ GQLGLG S+ P+ +++ +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGQNSYGQLGLGKECPSQASPQRVKSLD-G 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G +GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGKNSSGQLGLSDERDRESPCHVKLL 239
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 240 -RSQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVSQIACGRHHTLAFVPSSGMIYAFGCGTRGQLGTGHTCNVKCPSPV 341
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 117/258 (45%), Gaps = 48/258 (18%)
Query: 43 VSSFTPSP-VWDF-HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG 100
+ P P V+ F H V +VACG H V L+ GE Y + G N GQLG
Sbjct: 18 IQVIVPEPQVYGFIHDRNVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLG-H 68
Query: 101 DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQL 160
D E +I Q + V CG H+ L+ + + +++G G +GQL
Sbjct: 69 DCEGSKPEQIGALAGQH----IVHVACGESHSLALSDQGQ--------LFSWGAGSDGQL 116
Query: 161 GHGTTQSAL-VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGL-C 214
G T + A+ VP +K+L Q ++ V CG +H +++ G ++WG + GLG C
Sbjct: 117 GLTTIEDAVTVPRLIKKLNQQT-ILQVSCGNWHCLALAADGQFFTWGQNSYGQLGLGKEC 175
Query: 215 PN-ASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGR 273
P+ AS R ++ D I P+ QVA G AH+ ++ G ++ WG+
Sbjct: 176 PSQASPQRVKSLDGI-PL---------------AQVAAGGAHSFALSLSG-AVFGWGKNS 218
Query: 274 SGVLGTGKTIDFFAPAIV 291
SG LG D +P V
Sbjct: 219 SGQLGLSDERDRESPCHV 236
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 25/174 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFS-LVSSFTPSPVWDFHGHTVVKV 62
+ V AGG S A+ +GA++ WG +SS + G S +P V VV +
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWGK----NSSGQLGLSDERDRESPCHVKLLRSQKVVYI 247
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWA 121
+CG EH L +G + ++GA + GQLG + P+ ++E +
Sbjct: 248 SCGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE---- 295
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V ++ CG HT P+ M + FG G GQLG G T + P VK
Sbjct: 296 VSQIACGRHHTLAFV----PSS---GMIYAFGCGTRGQLGTGHTCNVKCPSPVK 342
>gi|449522972|ref|XP_004168499.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like, partial [Cucumis
sativus]
Length = 806
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 115/269 (42%), Gaps = 57/269 (21%)
Query: 42 LVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD 101
L + + V D HG +ACG H V + GE + SWG + G+LG G
Sbjct: 280 LPKALESTVVLDVHG-----IACGGRHAVLVTRQGEIF--------SWGEESGGRLGHGV 326
Query: 102 RESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQ 159
PKII+T S V V CG +HT +T L +T+G G + G
Sbjct: 327 EADVSHPKIIDTL---SGTNVELVACGEYHTCAVT--------LSGDLYTWGDGTHNYGL 375
Query: 160 LGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
LGHG+ S +P++V + + + + CG +HT+VV+SAG ++++G + S
Sbjct: 376 LGHGSEVSHWIPQKVSGQMEGIRVSYISCGAWHTAVVTSAGQLFTFG---------DGSF 426
Query: 220 TRNEAGDAISPILISGNGPH---GPKFQDPVQVACGAAHTVL-------VTDDG------ 263
GD I+ N P + +VACG HT ++D G
Sbjct: 427 GALGHGDH-----ITSNFPREVETLRGLRTTKVACGVWHTAAAVEAINELSDSGTSASPS 481
Query: 264 -YKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
KL++WG G G LG G P V
Sbjct: 482 SRKLYTWGDGDKGRLGHGDNEPRLVPECV 510
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 114/264 (43%), Gaps = 33/264 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + G + + +AG L+ +G+ + G + S+F P V G KV
Sbjct: 398 RVSYISCGAWHTAVVTSAGQLFTFGDGSF--GALGHGDHITSNF-PREVETLRGLRTTKV 454
Query: 63 ACGSEHVVALVSA-------GETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
ACG H A V A G + Y+WG + G+LG GD E RL P+ +
Sbjct: 455 ACGVWHTAAAVEAINELSDSGTSASPSSRKLYTWGDGDKGRLGHGDNEPRLVPECVAALM 514
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ + +V CG+ T LT R +T G GQLG T L P V+
Sbjct: 515 EER---ICQVACGNDLTVALTTAGR--------VYTMGSTAYGQLGSATANGKL-PTCVE 562
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG +H +V++S +V++WG KGL N L + +P ++
Sbjct: 563 GEIANSFVEEVACGSYHVAVLTSKNEVYTWG--KGL----NGQLGHGDNNHRNTPTIVD- 615
Query: 236 NGPHGPKFQDPVQVACGAAHTVLV 259
K + VACG+ TV++
Sbjct: 616 ----VLKDKQVKNVACGSKFTVVI 635
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 134/299 (44%), Gaps = 45/299 (15%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ +G L+ WG+ + G S VS + P V G V ++CG
Sbjct: 347 VACGEYHTCAVTLSGDLYTWGD-GTHNYGLLGHGSEVSHWIPQKVSGQMEGIRVSYISCG 405
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
+ H + SAG+ + ++G + G LG GD + P+ +ET +V
Sbjct: 406 AWHTAVVTSAGQLF--------TFGDGSFGALGHGDHITSNFPREVETLRG---LRTTKV 454
Query: 126 TCGSFHTALLTHRKRPNDMLES---------MCWTFGLGENGQLGHGTTQSALVPEQVKE 176
CG +HTA + N++ +S +T+G G+ G+LGHG + LVPE V
Sbjct: 455 ACGVWHTAAAV--EAINELSDSGTSASPSSRKLYTWGDGDKGRLGHGDNEPRLVPECVAA 512
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS----PIL 232
L + + V CG T +++AG V++ G S + G A + P
Sbjct: 513 LMEE-RICQVACGNDLTVALTTAGRVYTMG-----------STAYGQLGSATANGKLPTC 560
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ G + F + +VACG+ H ++T ++++WG+G +G LG G P IV
Sbjct: 561 VEGEIAN--SFVE--EVACGSYHVAVLTSKN-EVYTWGKGLNGQLGHGDNNHRNTPTIV 614
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 19/128 (14%)
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAG 225
AL+P+ + E + + + CG H +V+ G+++SWG E G LG A ++ +
Sbjct: 278 ALLPKAL-ESTVVLDVHGIACGGRHAVLVTRQGEIFSWGEESGGRLGHGVEADVSHPKII 336
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTGKTI 283
D +S + VACG HT VT G L++WG G G+LG G +
Sbjct: 337 DTLSGTNVE-------------LVACGEYHTCAVTLSG-DLYTWGDGTHNYGLLGHGSEV 382
Query: 284 DFFAPAIV 291
+ P V
Sbjct: 383 SHWIPQKV 390
>gi|218191372|gb|EEC73799.1| hypothetical protein OsI_08500 [Oryza sativa Indica Group]
Length = 988
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 137/301 (45%), Gaps = 44/301 (14%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL--------VSSFTPSPVW- 52
+++ ++ G + A+ +G L+ WG EG L S + P ++
Sbjct: 267 TRVKAIAFGAKHTCAVSISGELYEWG---------EGTHCLGLWGDQYQRSQWFPHKLFG 317
Query: 53 DFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE 112
G +++K+ACG H + SAG+ + ++G G LG GD + RPK +E
Sbjct: 318 PLDGISILKIACGHWHTAIISSAGQIF--------TYGDGTFGVLGHGDTLTVARPKQVE 369
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHR--KRPNDMLESMCWTFGLGENGQLGHGTTQSALV 170
+ A+ CG +HTA + R ++ +T+G + G+LGH + LV
Sbjct: 370 SLKGVRAKAI---ACGPWHTAAIVERMGTVKSNAPSGKLFTWGDADRGKLGHADKKMKLV 426
Query: 171 PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP 230
P V+ L + + V C T V++ G V++ G ++ L N + S
Sbjct: 427 PTCVEPLNDFDF-AQVSCAKAQTIVLTITGVVFTIGSKEHGRL-------GNPLSEDTSI 478
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
LI GP +F +++ G++H ++T +G K+++WG+G G LG G +D P +
Sbjct: 479 CLI--EGPLKTEFVR--EISSGSSHIAVLTMNG-KVFTWGKGTEGQLGLGDYVDRSYPTL 533
Query: 291 V 291
V
Sbjct: 534 V 534
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 111/280 (39%), Gaps = 42/280 (15%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
+++WG P + G S + P + H V VACG +H + GE +
Sbjct: 182 IFVWGEVP-GNVLDHGDVSKANVSLPRLLNTTHIIDVQSVACGEKHAAIVTKQGEVF--- 237
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPN 142
SWG +N G+LG S PKIIE+ + V + G+ HT ++
Sbjct: 238 -----SWGVDNGGRLGHKVSVSVSDPKIIESL---ASTRVKAIAFGAKHTCAVS---ISG 286
Query: 143 DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV 202
++ E W G G G +S P ++ + ++ + CG +HT+++SSAG +
Sbjct: 287 ELYE---WGEGTHCLGLWGDQYQRSQWFPHKLFGPLDGISILKIACGHWHTAIISSAGQI 343
Query: 203 WSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT 260
+++ G LG ++ R + +++ + +ACG HT +
Sbjct: 344 FTYGDGTFGVLGHGDTLTVARPKQVESLKGVRAKA-------------IACGPWHTAAIV 390
Query: 261 DD---------GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ KL++WG G LG P V
Sbjct: 391 ERMGTVKSNAPSGKLFTWGDADRGKLGHADKKMKLVPTCV 430
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +++ GS H+ L G+ + +WG GQLGLGD R P ++E
Sbjct: 490 VREISSGSSHIAVLTMNGKVF--------TWGKGTEGQLGLGDYVDRSYPTLVEALEDKQ 541
Query: 119 PWAVYEVTCG-SFHTALLTHR 138
V+ + CG +F A+ HR
Sbjct: 542 ---VHSIACGFNFTMAICLHR 559
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 93/263 (35%), Gaps = 57/263 (21%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G + I +AG ++ +G+ G ++ P V G +A
Sbjct: 324 ILKIACGHWHTAIISSAGQIFTYGDGTF---GVLGHGDTLTVARPKQVESLKGVRAKAIA 380
Query: 64 CGSEHVVALVSAGETYKGEDLV--CYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
CG H A+V T K ++WG + G+LG D++ +L P +E N +
Sbjct: 381 CGPWHTAAIVERMGTVKSNAPSGKLFTWGDADRGKLGHADKKMKLVPTCVEPLND---FD 437
Query: 122 VYEVTCGSFHTALLT------------HRKRPNDMLE--SMC------------------ 149
+V+C T +LT H + N + E S+C
Sbjct: 438 FAQVSCAKAQTIVLTITGVVFTIGSKEHGRLGNPLSEDTSICLIEGPLKTEFVREISSGS 497
Query: 150 ------------WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
+T+G G GQLG G P V+ L + S+ CG T +
Sbjct: 498 SHIAVLTMNGKVFTWGKGTEGQLGLGDYVDRSYPTLVEALEDK-QVHSIACGFNFTMAIC 556
Query: 198 SAGDVWSWGMEKGLGLCPNASLT 220
+ S K +C N LT
Sbjct: 557 LHRPLSS----KDQSVCSNCQLT 575
>gi|339234781|ref|XP_003378945.1| putative HECT-domain protein [Trichinella spiralis]
gi|316978479|gb|EFV61464.1| putative HECT-domain protein [Trichinella spiralis]
Length = 994
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 135/282 (47%), Gaps = 45/282 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+ SV G +A+ N G L+ WG+ E ++V+ + + + +V++
Sbjct: 113 HVISVACGDAHCVALTNDGHLFSWGSNVYGQLGVER-MNVVAKARYPRIQEINLANIVQI 171
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACGS H +AL S D V ++WG N++GQLG+G RES + P T N+ +
Sbjct: 172 ACGSNHSLALEST-------DGVLHAWGLNDHGQLGIGTRESFIGPT---TVNKLMGIPI 221
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKELPQY 180
++ G+ H+ +LT P+ + FG G+N GQ+G + L P VK L +
Sbjct: 222 CQLAAGASHSLVLT----PSGTV------FGWGKNMFGQIGQNEQRDILYPSLVK-LLRT 270
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGN 236
++ + CG + V++ G ++++G + G G N+ L + + + +++
Sbjct: 271 QKVIRLACGEDFSVAVTATGGLFTFGAGTYGQLGHG-NQNSELFPKQVMELMGSVVLD-- 327
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
VACG HT+ +T++ KL+++G SG LG
Sbjct: 328 ------------VACGRCHTLAITEN--KLYAFGLNTSGQLG 355
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 112/241 (46%), Gaps = 33/241 (13%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE--SRLRPKII 111
F G V+ VACG H VAL + G +SWG+N GQLG+ ++ R I
Sbjct: 109 FVGIHVISVACGDAHCVALTNDGHL--------FSWGSNVYGQLGVERMNVVAKARYPRI 160
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
+ N + + ++ CGS H+ L + + + +GL ++GQLG GT +S + P
Sbjct: 161 QEINLAN---IVQIACGSNHSLAL-------ESTDGVLHAWGLNDHGQLGIGTRESFIGP 210
Query: 172 EQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPI 231
V +L + + + G H+ V++ +G V+ WG + +NE D + P
Sbjct: 211 TTVNKLMG-IPICQLAAGASHSLVLTPSGTVFGWGKNMF------GQIGQNEQRDILYPS 263
Query: 232 LISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
L+ + Q +++ACG +V VT G L+++G G G LG G P V
Sbjct: 264 LVK-----LLRTQKVIRLACGEDFSVAVTATG-GLFTFGAGTYGQLGHGNQNSELFPKQV 317
Query: 292 L 292
+
Sbjct: 318 M 318
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 90/223 (40%), Gaps = 34/223 (15%)
Query: 80 KGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRK 139
K L+C G ++GQLGLG + + + + ++ CG H+ +L
Sbjct: 14 KSMSLLC--CGNTSDGQLGLGGIAEENVRSLTLVESTKNFLKIRQIACGRHHSVML---- 67
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV---------YLVSVDCGL 190
+ + ++ G + QLGH + P + L Y+ +++SV CG
Sbjct: 68 ----LDDGSVFSCGNNDFYQLGHDGIKRK--PNLYENLHWYIDVKQSFVGIHVISVACGD 121
Query: 191 FHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ 248
H +++ G ++SWG + LG+ N A P + N + VQ
Sbjct: 122 AHCVALTNDGHLFSWGSNVYGQLGV-----ERMNVVAKARYPRIQEIN------LANIVQ 170
Query: 249 VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ACG+ H++ + L +WG G LG G F P V
Sbjct: 171 IACGSNHSLALESTDGVLHAWGLNDHGQLGIGTRESFIGPTTV 213
>gi|195170687|ref|XP_002026143.1| GL16177 [Drosophila persimilis]
gi|194111023|gb|EDW33066.1| GL16177 [Drosophila persimilis]
Length = 1052
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 132/305 (43%), Gaps = 58/305 (19%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN--CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+ + G S+A+ G + WG+ C ST+ + P + TVV+
Sbjct: 88 VIQIACGSRHSMALTEWGQILSWGDNDCGQVGHSTDNDVIEL----PKILRFLVSRTVVQ 143
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG------LGDRESRLRPKIIETFN 115
+ACG+ H +AL S GE YSWG+N GQLG L + LR I
Sbjct: 144 IACGNNHSLALTSCGE--------LYSWGSNIYGQLGVQSPKDLPHSNAPLRLTTILGI- 194
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQ 173
P A + CG H+ L++ FG G+N GQLG Q+ P Q
Sbjct: 195 ---PLAT--IACGGNHSFLISKSSA----------VFGWGKNTCGQLGLNDEQNRAYPSQ 239
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAIS 229
+K + + + + V CG ++ +++ G V++ G + G G+ N + R
Sbjct: 240 LKSM-RTLGVRFVTCGDEYSVFLTNEGGVFTCGAGNYGQLGHGVSNNEMIPR-------- 290
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA 289
++I G QVACG HT+ + G +++S+G G SG LGT TI P
Sbjct: 291 -MVIELMG------STITQVACGNRHTLALVPSGGRVYSFGLGASGQLGTRNTISQTLPK 343
Query: 290 IVLWP 294
+V+ P
Sbjct: 344 VVIGP 348
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 93/204 (45%), Gaps = 27/204 (13%)
Query: 84 LVCYSWGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
+ Y WG ++GQLGLG + E L P IE F DSP V ++ CG HT LT +
Sbjct: 1 MALYCWGDASHGQLGLGGIENEQILLPSQIE-FKPDSP--VQQIACGHRHTLFLTANGQ- 56
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ G ++ QLGH +P + EL YV ++ + CG H+ ++ G
Sbjct: 57 -------VYACGNNDHHQLGHELPTKRPLP--IPELQAYV-VIQIACGSRHSMALTEWGQ 106
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+ SWG + G +++ I L+S + VQ+ACG H++ +T
Sbjct: 107 ILSWG-DNDCGQVGHSTDNDVIELPKILRFLVS---------RTVVQIACGNNHSLALTS 156
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDF 285
G +L+SWG G LG D
Sbjct: 157 CG-ELYSWGSNIYGQLGVQSPKDL 179
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 103/259 (39%), Gaps = 35/259 (13%)
Query: 22 ALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKG 81
AL+ WG+ GG PS + V ++ACG H + L + G+ Y
Sbjct: 2 ALYCWGDASHGQLGL-GGIENEQILLPSQIEFKPDSPVQQIACGHRHTLFLTANGQVY-- 58
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
NN LG RP I + V ++ CGS H+ LT
Sbjct: 59 --------ACGNNDHHQLGHELPTKRPLPIPEL---QAYVVIQIACGSRHSMALT----- 102
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + + W G + GQ+GH T + ++ +V + CG H+ ++S G+
Sbjct: 103 -EWGQILSW--GDNDCGQVGHSTDNDVIELPKILRFLVSRTVVQIACGNNHSLALTSCGE 159
Query: 202 VWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLV 259
++SWG + LG+ L + A ++ IL G +ACG H+ L+
Sbjct: 160 LYSWGSNIYGQLGVQSPKDLPHSNAPLRLTTIL-------GIPL---ATIACGGNHSFLI 209
Query: 260 TDDGYKLWSWGRGRSGVLG 278
+ ++ WG+ G LG
Sbjct: 210 SKSS-AVFGWGKNTCGQLG 227
>gi|340503755|gb|EGR30283.1| hypothetical protein IMG5_135970 [Ichthyophthirius multifiliis]
Length = 361
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 105/233 (45%), Gaps = 34/233 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+++++CG+ +AL +D + +SWG N+ G LGLG ES P+++ + D+
Sbjct: 25 IIQISCGTNFCLALT--------QDFLVFSWGDNSYGNLGLGHLESSHLPQLVRFLDNDN 76
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ ++CG +H+A + + +T+GLG GQLG G + P+ V+
Sbjct: 77 I-KIQHISCGQYHSAATSKTGQ--------VFTWGLGNFGQLGKGNLANFNQPDLVRGDL 127
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG--- 235
+ +++ CG +H ++ G +SWG C ++ + P++++
Sbjct: 128 EGKNILATVCGGYHNVCFTNEGYTYSWG-------CLEVDQQNIKSSNIPYPMMLNSEFI 180
Query: 236 ---NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
N P F + A + + +++WGR + G LG G +F
Sbjct: 181 KEENNP----FNMIITYIAAGADYCMAIEQKRIIYAWGRNKEGQLGIGGISNF 229
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT--PSPVWDFHGHTVVK 61
I + AG +AI+ ++ WG + + G +S+F PS V G+ +
Sbjct: 191 ITYIAAGADYCMAIEQKRIIYAWGR----NKEGQLGIGGISNFVDQPSKVQGLDGNLMKS 246
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL-RPKIIETFNQDSPW 120
+ACG EH + L +G ++ G++ +G+LGLG R + L P+ I
Sbjct: 247 IACGEEHSLFLTESGRI--------FACGSSKDGKLGLGIRNTILMTPQEINI-----KA 293
Query: 121 AVYEVTCGSFHTALLTHRKRPN------DMLES----MCWTFGLGENGQLGHGTTQSALV 170
V ++ CGS H+ L K + LE+ + +T+G G +LGHG +
Sbjct: 294 KVVKIACGSTHSMALAINKEVEQNQDEYEYLEAKETKVIYTWGNGWESKLGHGDKDNLDT 353
Query: 171 PEQ 173
P++
Sbjct: 354 PQK 356
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 118/317 (37%), Gaps = 63/317 (19%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTVVK 61
+I + G S A G ++ WG L + G +L + P V D G ++
Sbjct: 78 KIQHISCGQYHSAATSKTGQVFTWG---LGNFGQLGKGNLANFNQPDLVRGDLEGKNILA 134
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE----SRLRPKIIETFNQD 117
CG H V + G T YSWG Q + L + I+ N
Sbjct: 135 TVCGGYHNVCFTNEGYT--------YSWGCLEVDQQNIKSSNIPYPMMLNSEFIKEENNP 186
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL-VPEQVKE 176
+ + G+ + + ++ + + +G + GQLG G + + P +V+
Sbjct: 187 FNMIITYIAAGADYCMAIEQKR--------IIYAWGRNKEGQLGIGGISNFVDQPSKVQG 238
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPIL 232
L + + S+ CG H+ ++ +G +++ G K GLG+ +T E I
Sbjct: 239 LDGNL-MKSIACGEEHSLFLTESGRIFACGSSKDGKLGLGIRNTILMTPQE-------IN 290
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLV--------TDDGYK---------LWSWGRGRSG 275
I V++ACG+ H++ + D Y+ +++WG G
Sbjct: 291 IKA---------KVVKIACGSTHSMALAINKEVEQNQDEYEYLEAKETKVIYTWGNGWES 341
Query: 276 VLGTGKTIDFFAPAIVL 292
LG G + P L
Sbjct: 342 KLGHGDKDNLDTPQKFL 358
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAI 228
Q EL Q + ++ + CG ++ V+SWG GLG ++ L
Sbjct: 15 QNNELEQNIGIIQISCGTNFCLALTQDFLVFSWGDNSYGNLGLGHLESSHL--------- 65
Query: 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
P L+ K Q ++CG H+ + G ++++WG G G LG G +F P
Sbjct: 66 -PQLVRFLDNDNIKIQ---HISCGQYHSAATSKTG-QVFTWGLGNFGQLGKGNLANFNQP 120
Query: 289 AIV 291
+V
Sbjct: 121 DLV 123
>gi|218185898|gb|EEC68325.1| hypothetical protein OsI_36421 [Oryza sativa Indica Group]
Length = 425
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 129/314 (41%), Gaps = 66/314 (21%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFS-----LVSSFTPSPVWDFHGH 57
++ V AG S A+ G L+ WG +SS + G +VS TP V
Sbjct: 126 KVVEVSAGNHHSCAVTADGKLFAWGR----NSSGQLGLGKRAGKVVS--TPRKVDCLADS 179
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL---------RP 108
V VA GSEH +A GE SWGA G+LG G + S L P
Sbjct: 180 RVKMVALGSEHSIATTEEGEVL--------SWGAAGAGRLGHGHKTSILGFSITTSEYTP 231
Query: 109 KIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA 168
++I+ + + + G H+A + + F G+ + G G +
Sbjct: 232 RLIKNLDGVK---IKRIAAGMLHSACIDEKGT----------LFIFGQKTEKGFGRSGDE 278
Query: 169 LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
L P V+E+P + V CG +HT VV+ +GD++SWG + N L
Sbjct: 279 LRPTVVEEVP---FSEEVACGGYHTCVVTDSGDLYSWGSNE------NGCLGLGGTDMVR 329
Query: 229 SPILISGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWSW----------GRGRSGVL 277
SP ++ + F+ PV +V+CG HT +++ W W G G L
Sbjct: 330 SPEVLKSS-----LFKFPVSKVSCGWKHTAVISGGDIYTWGWGGANGTFFEEGHSSGGQL 384
Query: 278 GTGKTIDFFAPAIV 291
G G +D+F P +V
Sbjct: 385 GHGNDVDYFEPMMV 398
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 95/230 (41%), Gaps = 34/230 (14%)
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY-----EVT 126
++S+GE G V WG + G+LG+G ESR P F P +
Sbjct: 20 MLSSGEPAAGRRRVAALWGNGDYGRLGMGALESRWSPTACPFFLTGRPGDDDDDPPASLA 79
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS-ALVPEQVKELPQYVYLVS 185
CG HT LT R + GL + GQLG G++ + +L P +V + V V
Sbjct: 80 CGGAHTLFLTESGR--------VFAAGLNDFGQLGIGSSVTHSLEPIEVSGFDEKV--VE 129
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V G H+ V++ G +++WG GLG ++ D ++ +
Sbjct: 130 VSAGNHHSCAVTADGKLFAWGRNSSGQLGLGKRAGKVVSTPRKVDCLADSRVK------- 182
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
VA G+ H++ T++G L SWG +G LG G +I
Sbjct: 183 ------MVALGSEHSIATTEEGEVL-SWGAAGAGRLGHGHKTSILGFSIT 225
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 85/198 (42%), Gaps = 23/198 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS-SFTPSPVWDFHGHTVVK 61
+I + AG + S ID G L+++G TE GF P+ V + +
Sbjct: 241 KIKRIAAGMLHSACIDEKGTLFIFGQ------KTEKGFGRSGDELRPTVVEEVP--FSEE 292
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VACG H + +G+ YSWG+N NG LGLG + P+++++ P
Sbjct: 293 VACGGYHTCVVTDSGD--------LYSWGSNENGCLGLGGTDMVRSPEVLKSSLFKFP-- 342
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTF---GLGENGQLGHGTTQSALVPEQVKELP 178
V +V+CG HTA+++ TF G GQLGHG P V E
Sbjct: 343 VSKVSCGWKHTAVISGGDIYTWGWGGANGTFFEEGHSSGGQLGHGNDVDYFEPMMV-EFG 401
Query: 179 QYVYLVSVDCGLFHTSVV 196
+ V V CG HT +
Sbjct: 402 KNARAVHVSCGFNHTGAI 419
>gi|310824879|ref|YP_003957237.1| regulator of chromosome condensation [Stigmatella aurantiaca
DW4/3-1]
gi|309397951|gb|ADO75410.1| Regulator of chromosome condensation [Stigmatella aurantiaca
DW4/3-1]
Length = 775
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 121/288 (42%), Gaps = 40/288 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + +V AG SLA+ G +W WG+ + G + S P V + G V
Sbjct: 471 LSSVVAVAAGRYHSLAVRFDGTVWAWGDN---EYGQVGDGTETSRKAPVRVPNLGGG--V 525
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H + L S D ++WG N+ GQLG G P ++ +
Sbjct: 526 AVAAGENHSLVLRS--------DGTVWAWGGNHYGQLGNGITSDSPVPVQVQGLSGG--- 574
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V G +++ L R + W +GL GQLG GT + VP +V ++P
Sbjct: 575 --VAVAAGQYYS--LAVRS------DGTVWAWGLNFEGQLGDGTASDSPVPVRV-QVPGL 623
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
V+V G H VV S G VW+WG + A R + P+ + G
Sbjct: 624 SGGVAVAAGTSHALVVRSDGTVWAWGSNYDGQVGEGAPRRR-----VLMPVQVQG----- 673
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ + VA G H++ V DG +W+WG +GVLG G T P
Sbjct: 674 --LSEGMAVAAGYNHSLAVRSDG-SVWAWGGNTAGVLGDGTTDRRTVP 718
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 124/291 (42%), Gaps = 42/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + +V AG +SLA+ G +W WG +S G + + + PV V
Sbjct: 320 LSGVEAVAAGHSLSLAVRFDGTVWAWGG----NSYGALGNDTIETMSTVPVQVPGLSGGV 375
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V S H +A+ S D ++WG N+ GQLG G RL ++ +
Sbjct: 376 TVVAASSHALAVRS--------DGTVWAWGGNHYGQLGDGTTSERLVAVPVQGLS----- 422
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V H+ L R ++ W +G GQLG GTT+ VP V P+
Sbjct: 423 GVMAVAARQEHS--LAVRS------DATVWAWGRNYEGQLGDGTTRRREVPVPV---PKL 471
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V+V G +H+ V G VW+WG + G + + T +A P+ +
Sbjct: 472 SSVVAVAAGRYHSLAVRFDGTVWAWGDNE-YGQVGDGTETSRKA-----PVRV------- 518
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P V VA G H++++ DG +W+WG G LG G T D P V
Sbjct: 519 PNLGGGVAVAAGENHSLVLRSDG-TVWAWGGNHYGQLGNGITSDSPVPVQV 568
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 126/298 (42%), Gaps = 46/298 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT-PSPVWDFHGHTV 59
+S + +V G SLA+ + G +W G + +GG S T P+PV G
Sbjct: 120 LSGVVAVAVGAYHSLALRSDGTVWAVGRA-----ACQGGDGTASDCTVPAPVPGLSGG-- 172
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V VA G H +AL S D ++WG+N GQLG G L P ++
Sbjct: 173 VAVAAGGLHSLALRS--------DGTVWAWGSNFEGQLGDGTTNVSLVPVRVKKLT---- 220
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V V G H+ L R + WT+G G LG GTT S VP QV+ L
Sbjct: 221 -GVVAVAAGEKHS--LAVRS------DGTVWTWGFNGYGALGDGTTSSRKVPVQVQGLSG 271
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
V+V G++H+ V S G VW WG G+G + + R + P+ G
Sbjct: 272 G---VAVAGGVYHSLAVRSDGTVWGWG-ANGVGQLGDGTPMRR----VLVPVQAQG---- 319
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
VA G + ++ V DG +W+WG G LG TI+ + V P L+
Sbjct: 320 ---LSGVEAVAAGHSLSLAVRFDG-TVWAWGGNSYGALGN-DTIETMSTVPVQVPGLS 372
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 115/283 (40%), Gaps = 47/283 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S + +V A SLA+ + +W WG L D +T P PV
Sbjct: 421 LSGVMAVAARQEHSLAVRSDATVWAWGRNYEGQLGDGTTR------RREVPVPVPKLS-- 472
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+VV VA G H +A+ D ++WG N GQ+G G SR P +
Sbjct: 473 SVVAVAAGRYHSLAVR--------FDGTVWAWGDNEYGQVGDGTETSRKAPVRVPNLGGG 524
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V G H+ +L + W +G GQLG+G T + VP QV+ L
Sbjct: 525 -----VAVAAGENHSLVLRS--------DGTVWAWGGNHYGQLGNGITSDSPVPVQVQGL 571
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
V+V G +++ V S G VW+WG+ L A D+ P+ +
Sbjct: 572 SGG---VAVAAGQYYSLAVRSDGTVWAWGLNF------EGQLGDGTASDSPVPVRV---- 618
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
P V VA G +H ++V DG +W+WG G +G G
Sbjct: 619 -QVPGLSGGVAVAAGTSHALVVRSDG-TVWAWGSNYDGQVGEG 659
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 118/300 (39%), Gaps = 49/300 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S +V A +LA+ + G +W WG L D +T PV G
Sbjct: 371 LSGGVTVVAASSHALAVRSDGTVWAWGGNHYGQLGDGTTS------ERLVAVPVQGLSG- 423
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+ VA EH +A+ S D ++WG N GQLG G R P + +
Sbjct: 424 -VMAVAARQEHSLAVRS--------DATVWAWGRNYEGQLGDGTTRRREVPVPVPKLS-- 472
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+V V G +H+ + + W +G E GQ+G GT S P +V
Sbjct: 473 ---SVVAVAAGRYHSLAV--------RFDGTVWAWGDNEYGQVGDGTETSRKAPVRV--- 518
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P V+V G H+ V+ S G VW+WG L D+ P+ + G
Sbjct: 519 PNLGGGVAVAAGENHSLVLRSDGTVWAWGGNH------YGQLGNGITSDSPVPVQVQG-- 570
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
V VA G +++ V DG +W+WG G LG G D P V P L+
Sbjct: 571 -----LSGGVAVAAGQYYSLAVRSDG-TVWAWGLNFEGQLGDGTASDSPVPVRVQVPGLS 624
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 118/286 (41%), Gaps = 49/286 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S +V AGG+ SLA+ + G +W WG+ L D +T S P V G
Sbjct: 169 LSGGVAVAAGGLHSLALRSDGTVWAWGSNFEGQLGDGTTN------VSLVPVRVKKLTG- 221
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV VA G +H +A+ S D ++WG N G LG G SR P ++ +
Sbjct: 222 -VVAVAAGEKHSLAVRS--------DGTVWTWGFNGYGALGDGTTSSRKVPVQVQGLSGG 272
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-TQSALVPEQVKE 176
V G +H+ L R + W +G GQLG GT + LVP Q +
Sbjct: 273 -----VAVAGGVYHS--LAVRS------DGTVWGWGANGVGQLGDGTPMRRVLVPVQAQG 319
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L + +V G + V G VW+WG G N ++ + P+ +
Sbjct: 320 LSG---VEAVAAGHSLSLAVRFDGTVWAWGGNS-YGALGNDTIETM----STVPVQV--- 368
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
P V V ++H + V DG +W+WG G LG G T
Sbjct: 369 ----PGLSGGVTVVAASSHALAVRSDG-TVWAWGGNHYGQLGDGTT 409
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 112/287 (39%), Gaps = 51/287 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMW---GNCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + +V AG SLA+ + G +W W G L D +T S P V G
Sbjct: 219 LTGVVAVAAGEKHSLAVRSDGTVWTWGFNGYGALGDGTTS------SRKVPVQVQGLSGG 272
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR-LRPKIIETFNQ 116
V VA G H +A+ S D + WGAN GQLG G R L P + +
Sbjct: 273 --VAVAGGVYHSLAVRS--------DGTVWGWGANGVGQLGDGTPMRRVLVPVQAQGLS- 321
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS-ALVPEQVK 175
V V G H+ L R + W +G G LG+ T ++ + VP QV
Sbjct: 322 ----GVEAVAAG--HSLSLAVR------FDGTVWAWGGNSYGALGNDTIETMSTVPVQVP 369
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L V +V+ H V S G VW+WG L + + + + G
Sbjct: 370 GLSGGVTVVAASS---HALAVRSDGTVWAWGGNH------YGQLGDGTTSERLVAVPVQG 420
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+ VA H++ V D +W+WGR G LG G T
Sbjct: 421 -------LSGVMAVAARQEHSLAVRSD-ATVWAWGRNYEGQLGDGTT 459
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 111/277 (40%), Gaps = 42/277 (15%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
+V AG SL + + G +W WG ++S +P PV V VA
Sbjct: 525 VAVAAGENHSLVLRSDGTVWAWGGNHYGQLGNG-----ITSDSPVPVQVQGLSGGVAVAA 579
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G + +A+ S D ++WG N GQLG G P ++
Sbjct: 580 GQYYSLAVRS--------DGTVWAWGLNFEGQLGDGTASDSPVPVRVQVPGLSGG---VA 628
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-TQSALVPEQVKELPQYVYL 183
V G+ H ++ + W +G +GQ+G G + L+P QV+ L + +
Sbjct: 629 VAAGTSHALVVRS--------DGTVWAWGSNYDGQVGEGAPRRRVLMPVQVQGLSEGM-- 678
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+V G H+ V S G VW+WG G+ + + R + + G G +
Sbjct: 679 -AVAAGYNHSLAVRSDGSVWAWGGNT-AGVLGDGTTDRRT-------VPVQAQGLTGAR- 728
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
VA G +H++++ DG W+ G SG +G G
Sbjct: 729 ----AVAAGESHSLVLRSDGTG-WAMGSNASGQIGDG 760
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 60/146 (41%), Gaps = 18/146 (12%)
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSW 205
+ W G GQLG GTT VP QV+ L +V+V G +H+ + S G VW+
Sbjct: 89 DGTVWAVGENVFGQLGDGTTSERRVPVQVQGLSG---VVAVAVGAYHSLALRSDGTVWA- 144
Query: 206 GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
G C T A D P + P V VA G H++ + DG
Sbjct: 145 ---VGRAACQGGDGT---ASDCTVPAPV-------PGLSGGVAVAAGGLHSLALRSDG-T 190
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIV 291
+W+WG G LG G T P V
Sbjct: 191 VWAWGSNFEGQLGDGTTNVSLVPVRV 216
>gi|298714248|emb|CBJ27384.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 635
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 113/260 (43%), Gaps = 48/260 (18%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P P+ D G + +V GS H +A G+ Y WG +GQLGLGDRES+
Sbjct: 185 PRPIRDLVGEEICQVQAGSSHCLAGSMGGDL--------YVWGRGESGQLGLGDRESKQI 236
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
P + F + + V +V G H+ +LT +++G G+ G+LG G
Sbjct: 237 PVLNAGFPEGT--EVSQVAVGENHSLVLTK--------AGGVYSWGHGDRGRLGVGACWR 286
Query: 168 ALVPEQVKEL---PQYVYLVS------VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNAS 218
VP+ K + P ++ S V CG V++A +VWSWG +G L +
Sbjct: 287 VGVPQSEKNIFPTPMLLHTFSKEVVRQVSCGPSFCLAVTAA-NVWSWGAGEGCVLGHGDT 345
Query: 219 LTRNEAGDAISPILISGNGPHGPKFQDPV--QVACGAAHT---VLV--TDDGYKLWSWGR 271
LTR +P+ I F+ V Q CG H VLV DG L++WG
Sbjct: 346 LTRE------TPVQIEA-------FKGSVVLQAECGTWHCAALVLVPPCKDGGYLYTWGS 392
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G G L G PAIV
Sbjct: 393 GYHGQLALGTRQVQPTPAIV 412
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 128/296 (43%), Gaps = 57/296 (19%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDF-HGHTVVK 61
+IC V+AG LA G L++WG +S G S P F G V +
Sbjct: 195 EICQVQAGSSHCLAGSMGGDLYVWGR---GESGQLGLGDRESKQIPVLNAGFPEGTEVSQ 251
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG----------DRESRLRPKII 111
VA G H + L AG YSWG + G+LG+G ++ P ++
Sbjct: 252 VAVGENHSLVLTKAGGV--------YSWGHGDRGRLGVGACWRVGVPQSEKNIFPTPMLL 303
Query: 112 ETFNQDSPWAVYEVTCG-SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALV 170
TF+++ V +V+CG SF A+ + W++G GE LGHG T +
Sbjct: 304 HTFSKE---VVRQVSCGPSFCLAVTA----------ANVWSWGAGEGCVLGHGDTLTRET 350
Query: 171 PEQVKELPQYVYLVSVDCGLFHTSVV------SSAGDVWSWGMEKGLGLCPNASL-TRN- 222
P Q++ V L +CG +H + + G +++WG G +L TR
Sbjct: 351 PVQIEAFKGSVVL-QAECGTWHCAALVLVPPCKDGGYLYTWGS----GYHGQLALGTRQV 405
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
+ AI L++ Q +V CG+ H VT DG +L++WG R+G LG
Sbjct: 406 QPTPAIVAKLLATQ-------QLLRKVWCGSHHCAAVTTDG-ELYTWGSNRTGCLG 453
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 93/224 (41%), Gaps = 38/224 (16%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGN-------------CPLPDSSTEGGFSLVSSFTP 48
+++ V G SL + AG ++ WG+ +P S + P
Sbjct: 247 TEVSQVAVGENHSLVLTKAGGVYSWGHGDRGRLGVGACWRVGVPQSE--------KNIFP 298
Query: 49 SPVW--DFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
+P+ F V +V+CG +A+ +A +SWGA LG GD +R
Sbjct: 299 TPMLLHTFSKEVVRQVSCGPSFCLAVTAAN---------VWSWGAGEGCVLGHGDTLTRE 349
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P IE F V + CG++H A L D +T+G G +GQL GT Q
Sbjct: 350 TPVQIEAFKGS---VVLQAECGTWHCAALVLVPPCKD--GGYLYTWGSGYHGQLALGTRQ 404
Query: 167 SALVPEQV-KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
P V K L L V CG H + V++ G++++WG +
Sbjct: 405 VQPTPAIVAKLLATQQLLRKVWCGSHHCAAVTTDGELYTWGSNR 448
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 97/226 (42%), Gaps = 37/226 (16%)
Query: 82 EDLVCYSWGANNNG----QLGLG-----DRESRLRPKIIETFNQDSPWAVYEVTCGSFHT 132
ED SWGA G +LG G D + + P+ I + + +V GS H
Sbjct: 150 EDHDVLSWGAKGIGATGHRLGTGAFDDDDEDLYMEPRPIRDLVGEE---ICQVQAGSSHC 206
Query: 133 ALLTHRKRPNDMLESM---CWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCG 189
+ SM + +G GE+GQLG G +S +P P+ + V G
Sbjct: 207 -----------LAGSMGGDLYVWGRGESGQLGLGDRESKQIPVLNAGFPEGTEVSQVAVG 255
Query: 190 LFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
H+ V++ AG V+SWG G+G C + ++E +P+L+ H +
Sbjct: 256 ENHSLVLTKAGGVYSWGHGDRGRLGVGACWRVGVPQSEKNIFPTPMLL-----HTFSKEV 310
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
QV+CG + + VT +WSWG G VLG G T+ P +
Sbjct: 311 VRQVSCGPSFCLAVT--AANVWSWGAGEGCVLGHGDTLTRETPVQI 354
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 78/184 (42%), Gaps = 21/184 (11%)
Query: 7 VKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
V G LA+ A +W WG C L T ++ TP + F G V++
Sbjct: 314 VSCGPSFCLAV-TAANVWSWGAGEGCVLGHGDT------LTRETPVQIEAFKGSVVLQAE 366
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG+ H ALV G L Y+WG+ +GQL LG R+ + P I+ + +
Sbjct: 367 CGTWHCAALVLVPPCKDGGYL--YTWGSGYHGQLALGTRQVQPTPAIVAKL-LATQQLLR 423
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
+V CGS H A +T + +T+G G LG P + + +P++V L
Sbjct: 424 KVWCGSHHCAAVT--------TDGELYTWGSNRTGCLGRALPDLNNEPSRARFVPRFVLL 475
Query: 184 VSVD 187
D
Sbjct: 476 GKED 479
>gi|115374764|ref|ZP_01462040.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
gi|115368241|gb|EAU67200.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
Length = 750
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 121/288 (42%), Gaps = 40/288 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + +V AG SLA+ G +W WG+ + G + S P V + G V
Sbjct: 446 LSSVVAVAAGRYHSLAVRFDGTVWAWGDN---EYGQVGDGTETSRKAPVRVPNLGGG--V 500
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H + L S D ++WG N+ GQLG G P ++ +
Sbjct: 501 AVAAGENHSLVLRS--------DGTVWAWGGNHYGQLGNGITSDSPVPVQVQGLSGG--- 549
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V G +++ L R + W +GL GQLG GT + VP +V ++P
Sbjct: 550 --VAVAAGQYYS--LAVRS------DGTVWAWGLNFEGQLGDGTASDSPVPVRV-QVPGL 598
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
V+V G H VV S G VW+WG + A R + P+ + G
Sbjct: 599 SGGVAVAAGTSHALVVRSDGTVWAWGSNYDGQVGEGAPRRR-----VLMPVQVQG----- 648
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ + VA G H++ V DG +W+WG +GVLG G T P
Sbjct: 649 --LSEGMAVAAGYNHSLAVRSDG-SVWAWGGNTAGVLGDGTTDRRTVP 693
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 124/291 (42%), Gaps = 42/291 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + +V AG +SLA+ G +W WG +S G + + + PV V
Sbjct: 295 LSGVEAVAAGHSLSLAVRFDGTVWAWGG----NSYGALGNDTIETMSTVPVQVPGLSGGV 350
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V S H +A+ S D ++WG N+ GQLG G RL ++ +
Sbjct: 351 TVVAASSHALAVRS--------DGTVWAWGGNHYGQLGDGTTSERLVAVPVQGLS----- 397
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V V H+ L R ++ W +G GQLG GTT+ VP V P+
Sbjct: 398 GVMAVAARQEHS--LAVRS------DATVWAWGRNYEGQLGDGTTRRREVPVPV---PKL 446
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+V+V G +H+ V G VW+WG + G + + T +A P+ +
Sbjct: 447 SSVVAVAAGRYHSLAVRFDGTVWAWGDNE-YGQVGDGTETSRKA-----PVRV------- 493
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P V VA G H++++ DG +W+WG G LG G T D P V
Sbjct: 494 PNLGGGVAVAAGENHSLVLRSDG-TVWAWGGNHYGQLGNGITSDSPVPVQV 543
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 126/298 (42%), Gaps = 46/298 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT-PSPVWDFHGHTV 59
+S + +V G SLA+ + G +W G + +GG S T P+PV G
Sbjct: 95 LSGVVAVAVGAYHSLALRSDGTVWAVGRA-----ACQGGDGTASDCTVPAPVPGLSGG-- 147
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V VA G H +AL S D ++WG+N GQLG G L P ++
Sbjct: 148 VAVAAGGLHSLALRS--------DGTVWAWGSNFEGQLGDGTTNVSLVPVRVKKLT---- 195
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V V G H+ L R + WT+G G LG GTT S VP QV+ L
Sbjct: 196 -GVVAVAAGEKHS--LAVRS------DGTVWTWGFNGYGALGDGTTSSRKVPVQVQGLSG 246
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
V+V G++H+ V S G VW WG G+G + + R + P+ G
Sbjct: 247 G---VAVAGGVYHSLAVRSDGTVWGWG-ANGVGQLGDGTPMRR----VLVPVQAQG---- 294
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
VA G + ++ V DG +W+WG G LG TI+ + V P L+
Sbjct: 295 ---LSGVEAVAAGHSLSLAVRFDG-TVWAWGGNSYGALGN-DTIETMSTVPVQVPGLS 347
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 115/283 (40%), Gaps = 47/283 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S + +V A SLA+ + +W WG L D +T P PV
Sbjct: 396 LSGVMAVAARQEHSLAVRSDATVWAWGRNYEGQLGDGTTR------RREVPVPVPKLS-- 447
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+VV VA G H +A+ D ++WG N GQ+G G SR P +
Sbjct: 448 SVVAVAAGRYHSLAVR--------FDGTVWAWGDNEYGQVGDGTETSRKAPVRVPNLGGG 499
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V G H+ +L + W +G GQLG+G T + VP QV+ L
Sbjct: 500 -----VAVAAGENHSLVLRS--------DGTVWAWGGNHYGQLGNGITSDSPVPVQVQGL 546
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
V+V G +++ V S G VW+WG+ L A D+ P+ +
Sbjct: 547 SGG---VAVAAGQYYSLAVRSDGTVWAWGLNF------EGQLGDGTASDSPVPVRV---- 593
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
P V VA G +H ++V DG +W+WG G +G G
Sbjct: 594 -QVPGLSGGVAVAAGTSHALVVRSDG-TVWAWGSNYDGQVGEG 634
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 118/300 (39%), Gaps = 49/300 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S +V A +LA+ + G +W WG L D +T PV G
Sbjct: 346 LSGGVTVVAASSHALAVRSDGTVWAWGGNHYGQLGDGTTS------ERLVAVPVQGLSG- 398
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+ VA EH +A+ S D ++WG N GQLG G R P + +
Sbjct: 399 -VMAVAARQEHSLAVRS--------DATVWAWGRNYEGQLGDGTTRRREVPVPVPKLS-- 447
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+V V G +H+ + + W +G E GQ+G GT S P +V
Sbjct: 448 ---SVVAVAAGRYHSLAV--------RFDGTVWAWGDNEYGQVGDGTETSRKAPVRV--- 493
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P V+V G H+ V+ S G VW+WG L D+ P+ + G
Sbjct: 494 PNLGGGVAVAAGENHSLVLRSDGTVWAWGGNH------YGQLGNGITSDSPVPVQVQG-- 545
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
V VA G +++ V DG +W+WG G LG G D P V P L+
Sbjct: 546 -----LSGGVAVAAGQYYSLAVRSDG-TVWAWGLNFEGQLGDGTASDSPVPVRVQVPGLS 599
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 118/286 (41%), Gaps = 49/286 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S +V AGG+ SLA+ + G +W WG+ L D +T S P V G
Sbjct: 144 LSGGVAVAAGGLHSLALRSDGTVWAWGSNFEGQLGDGTTN------VSLVPVRVKKLTG- 196
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV VA G +H +A+ S D ++WG N G LG G SR P ++ +
Sbjct: 197 -VVAVAAGEKHSLAVRS--------DGTVWTWGFNGYGALGDGTTSSRKVPVQVQGLSGG 247
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-TQSALVPEQVKE 176
V G +H+ L R + W +G GQLG GT + LVP Q +
Sbjct: 248 -----VAVAGGVYHS--LAVRS------DGTVWGWGANGVGQLGDGTPMRRVLVPVQAQG 294
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L + +V G + V G VW+WG G N ++ + P+ +
Sbjct: 295 LSG---VEAVAAGHSLSLAVRFDGTVWAWGGNS-YGALGNDTIETM----STVPVQV--- 343
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
P V V ++H + V DG +W+WG G LG G T
Sbjct: 344 ----PGLSGGVTVVAASSHALAVRSDG-TVWAWGGNHYGQLGDGTT 384
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 112/287 (39%), Gaps = 51/287 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMW---GNCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + +V AG SLA+ + G +W W G L D +T S P V G
Sbjct: 194 LTGVVAVAAGEKHSLAVRSDGTVWTWGFNGYGALGDGTTS------SRKVPVQVQGLSGG 247
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR-LRPKIIETFNQ 116
V VA G H +A+ S D + WGAN GQLG G R L P + +
Sbjct: 248 --VAVAGGVYHSLAVRS--------DGTVWGWGANGVGQLGDGTPMRRVLVPVQAQGLS- 296
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS-ALVPEQVK 175
V V G H+ L R + W +G G LG+ T ++ + VP QV
Sbjct: 297 ----GVEAVAAG--HSLSLAVR------FDGTVWAWGGNSYGALGNDTIETMSTVPVQVP 344
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
L V +V+ H V S G VW+WG L + + + + G
Sbjct: 345 GLSGGVTVVAASS---HALAVRSDGTVWAWGGNH------YGQLGDGTTSERLVAVPVQG 395
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+ VA H++ V D +W+WGR G LG G T
Sbjct: 396 -------LSGVMAVAARQEHSLAVRSD-ATVWAWGRNYEGQLGDGTT 434
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 111/277 (40%), Gaps = 42/277 (15%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
+V AG SL + + G +W WG ++S +P PV V VA
Sbjct: 500 VAVAAGENHSLVLRSDGTVWAWGGNHYGQLGNG-----ITSDSPVPVQVQGLSGGVAVAA 554
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G + +A+ S D ++WG N GQLG G P ++
Sbjct: 555 GQYYSLAVRS--------DGTVWAWGLNFEGQLGDGTASDSPVPVRVQVPGLSGG---VA 603
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-TQSALVPEQVKELPQYVYL 183
V G+ H ++ + W +G +GQ+G G + L+P QV+ L + +
Sbjct: 604 VAAGTSHALVVRS--------DGTVWAWGSNYDGQVGEGAPRRRVLMPVQVQGLSEGM-- 653
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF 243
+V G H+ V S G VW+WG G+ + + R + + G G +
Sbjct: 654 -AVAAGYNHSLAVRSDGSVWAWGGNT-AGVLGDGTTDRRT-------VPVQAQGLTGAR- 703
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
VA G +H++++ DG W+ G SG +G G
Sbjct: 704 ----AVAAGESHSLVLRSDGTG-WAMGSNASGQIGDG 735
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 60/146 (41%), Gaps = 18/146 (12%)
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSW 205
+ W G GQLG GTT VP QV+ L +V+V G +H+ + S G VW+
Sbjct: 64 DGTVWAVGENVFGQLGDGTTSERRVPVQVQGLSG---VVAVAVGAYHSLALRSDGTVWA- 119
Query: 206 GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
G C T A D P + P V VA G H++ + DG
Sbjct: 120 ---VGRAACQGGDGT---ASDCTVPAPV-------PGLSGGVAVAAGGLHSLALRSDG-T 165
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIV 291
+W+WG G LG G T P V
Sbjct: 166 VWAWGSNFEGQLGDGTTNVSLVPVRV 191
>gi|348504160|ref|XP_003439630.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6-like
[Oreochromis niloticus]
Length = 1369
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 88/191 (46%), Gaps = 20/191 (10%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSP--VWDFHGHTVVKVACGSEHVVAL-VSAGE 77
G L+ WG D + G S SP V +++VA G + AL VS G
Sbjct: 631 GQLYTWGQ----DCRGQLGLGTRKSVCRSPQHVPSLSAIPLIQVAAGGDQSFALSVSGG- 685
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
+SWG N+ GQLGLGD + R P ++ N ++CG HTA+LT
Sbjct: 686 --------VFSWGRNDCGQLGLGDTKDRHTPAPVQCLNMKK---AQHISCGQDHTAILTK 734
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
+TFG G++GQLGH + ++ L P V EL + + CG HT ++
Sbjct: 735 SSGXXXXXXXAVFTFGSGQHGQLGHNSLRNELRPRLVAELWG-AKVTKITCGRNHTLALT 793
Query: 198 SAGDVWSWGME 208
+ V+S+G E
Sbjct: 794 ESKQVYSFGCE 804
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 19/178 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +G ++ WG D G TP+PV + ++
Sbjct: 667 LIQVAAGGDQSFALSVSGGVFSWGR---NDCGQLGLGDTKDRHTPAPVQCLNMKKAQHIS 723
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW--A 121
CG +H L + +++G+ +GQLG + LRP+++ W
Sbjct: 724 CGQDHTAILTKSSGXXXXXXXAVFTFGSGQHGQLGHNSLRNELRPRLVAEL-----WGAK 778
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V ++TCG HT LT K+ ++FG + GQLGH + VP V+ LPQ
Sbjct: 779 VTKITCGRNHTLALTESKQ--------VYSFGCEDQGQLGHREESNPSVPLPVR-LPQ 827
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 83/202 (41%), Gaps = 30/202 (14%)
Query: 102 RESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
R +R R K ++ + + V+CG ALL+ + +L +T+G GQLG
Sbjct: 594 RRARGRQKFVKHKEK-----IEAVSCGDDVVALLSESGK---VLYGQLYTWGQDCRGQLG 645
Query: 162 HGTTQSAL-VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
GT +S P+ V L + L+ V G + +S +G V+SWG C L
Sbjct: 646 LGTRKSVCRSPQHVPSLSA-IPLIQVAAGGDQSFALSVSGGVFSWGRND----CGQLGLG 700
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG-------YKLWSWGRGR 273
+ +P+ + ++CG HT ++T ++++G G+
Sbjct: 701 DTKDRHTPAPV-------QCLNMKKAQHISCGQDHTAILTKSSGXXXXXXXAVFTFGSGQ 753
Query: 274 SGVLGTGKTIDFFAPAIV--LW 293
G LG + P +V LW
Sbjct: 754 HGQLGHNSLRNELRPRLVAELW 775
>gi|66817532|ref|XP_642619.1| regulator of chromosome condensation domain-containing protein
[Dictyostelium discoideum AX4]
gi|60470703|gb|EAL68677.1| regulator of chromosome condensation domain-containing protein
[Dictyostelium discoideum AX4]
Length = 849
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 98/212 (46%), Gaps = 24/212 (11%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y+WG N GQLGLG+R P++++T + V CG H +T D E
Sbjct: 234 YTWGFNEKGQLGLGNRWFHSTPQLVKTL---IDVNIVSVVCGRQHICAIT------DQGE 284
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY-VYLVSVDCGLFHTSVVSSAGDVWSW 205
W GLG GQLGHG +S L P+++++ + + V CG T V S G ++++
Sbjct: 285 VYSW--GLGVFGQLGHGNVKSYLHPKKIQQFVELNERIAQVACGSNFTMVRSVQGLLYAF 342
Query: 206 GM-EKG-LGLCPNASLT----RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLV 259
G E G LG R+ PI++ K VACG HT++V
Sbjct: 343 GHGEYGQLGSTEETQHLDFGGRDNHFKYSIPIVVKSLETKKIK-----NVACGHLHTIVV 397
Query: 260 TDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
TD+ +++ WG G SG LG G P ++
Sbjct: 398 TDEN-EVYQWGWGSSGALGLGNKRFQLVPQLI 428
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 117/274 (42%), Gaps = 54/274 (19%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTV 59
++ V G S A+ +G L+ WG + +G L + + TP V +
Sbjct: 213 EVVDVSGGWAFSAAVTKSGRLYTWG------FNEKGQLGLGNRWFHSTPQLVKTLIDVNI 266
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V V CG +H+ A+ GE YSWG GQLG G+ +S L PK I+ F + +
Sbjct: 267 VSVVCGRQHICAITDQGEV--------YSWGLGVFGQLGHGNVKSYLHPKKIQQFVELNE 318
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL---------- 169
+ +V CGS T + + ++ + + FG GE GQLG L
Sbjct: 319 -RIAQVACGSNFTMVRS--------VQGLLYAFGHGEYGQLGSTEETQHLDFGGRDNHFK 369
Query: 170 --VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEAG 225
+P VK L + + +V CG HT VV+ +V W WG LGL N+
Sbjct: 370 YSIPIVVKSL-ETKKIKNVACGHLHTIVVTDENEVYQWGWGSSGALGLG-------NKRF 421
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLV 259
+ ++ S +G ++ + G HT++V
Sbjct: 422 QLVPQLITSLSG------EEIASITAGEKHTIVV 449
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 14/125 (11%)
Query: 151 TFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK- 209
+ G +NGQLGH + + L P ++ L + +V G H+ VS GDV+SWG K
Sbjct: 5 SVGQSKNGQLGHDSIKECLEPTVIEGLLGKRIIQTVS-GEAHSLAVSRFGDVYSWGRSKE 63
Query: 210 ---GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
G+G S ++ P LI + + ++VACG H++ +TD G K+
Sbjct: 64 GQLGIGQGYGGS---DKVMFVAKPTLIK-----SLQHERIIKVACGNFHSLALTDMG-KV 114
Query: 267 WSWGR 271
+ WG+
Sbjct: 115 YEWGQ 119
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 104/262 (39%), Gaps = 54/262 (20%)
Query: 41 SLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG 100
S+ P+ + G +++ G H +A+ G+ Y SWG + GQLG+G
Sbjct: 18 SIKECLEPTVIEGLLGKRIIQTVSGEAHSLAVSRFGDVY--------SWGRSKEGQLGIG 69
Query: 101 ------DRESRL-RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFG 153
D+ + +P +I++ + + +V CG+FH+ LT DM + W
Sbjct: 70 QGYGGSDKVMFVAKPTLIKSLQHER---IIKVACGNFHSLALT------DMGKVYEW--- 117
Query: 154 LGENGQLGH-GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL- 211
GQL +QS+L + L + L S ++ ++ + G +K
Sbjct: 118 ----GQLHRLDESQSSLDIQSTNGLIEMPRLSS-------QRIIEASVSQYLSGEKKAYD 166
Query: 212 ---GLCPNASLTRNEAGDAISP------ILISGNGPHGPKFQD----PVQVACGAAHTVL 258
G P EA ++ +I N + QD V V+ G A +
Sbjct: 167 ANGGTKPKDDDEDKEASNSAQSKSKHLGKIIDLNQTIPMQIQDIPEEVVDVSGGWAFSAA 226
Query: 259 VTDDGYKLWSWGRGRSGVLGTG 280
VT G +L++WG G LG G
Sbjct: 227 VTKSG-RLYTWGFNEKGQLGLG 247
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 19/126 (15%)
Query: 88 SWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLES 147
S G + NGQLG + L P +IE + + G H+ ++ R D+
Sbjct: 5 SVGQSKNGQLGHDSIKECLEPTVIEGL---LGKRIIQTVSGEAHSLAVS---RFGDV--- 55
Query: 148 MCWTFGLGENGQLG----HGTTQSALV---PEQVKELPQYVYLVSVDCGLFHTSVVSSAG 200
+++G + GQLG +G + + P +K L Q+ ++ V CG FH+ ++ G
Sbjct: 56 --YSWGRSKEGQLGIGQGYGGSDKVMFVAKPTLIKSL-QHERIIKVACGNFHSLALTDMG 112
Query: 201 DVWSWG 206
V+ WG
Sbjct: 113 KVYEWG 118
>gi|449442447|ref|XP_004138993.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101222790 [Cucumis sativus]
Length = 982
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 115/269 (42%), Gaps = 57/269 (21%)
Query: 42 LVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD 101
L + + V D HG +ACG H V + GE + SWG + G+LG G
Sbjct: 280 LPKALESTVVLDVHG-----IACGGRHAVLVTRQGEIF--------SWGEESGGRLGHGV 326
Query: 102 RESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQ 159
PKII+T S V V CG +HT +T L +T+G G + G
Sbjct: 327 EADVSHPKIIDTL---SGTNVELVACGEYHTCAVT--------LSGDLYTWGDGTHNYGL 375
Query: 160 LGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
LGHG+ S +P++V + + + + CG +HT+VV+SAG ++++G + S
Sbjct: 376 LGHGSEVSHWIPQKVGGQMEGIRVSYISCGAWHTAVVTSAGQLFTFG---------DGSF 426
Query: 220 TRNEAGDAISPILISGNGPH---GPKFQDPVQVACGAAHTVL-------VTDDG------ 263
GD I+ N P + +VACG HT ++D G
Sbjct: 427 GALGHGDH-----ITSNFPREVETLRGLRTTKVACGVWHTAAAVEAINELSDSGTSASPS 481
Query: 264 -YKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
KL++WG G G LG G P V
Sbjct: 482 SRKLYTWGDGDKGRLGHGDNEPRLVPECV 510
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 134/299 (44%), Gaps = 45/299 (15%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTVVKVACG 65
V G + A+ +G L+ WG+ + G S VS + P V G V ++CG
Sbjct: 347 VACGEYHTCAVTLSGDLYTWGD-GTHNYGLLGHGSEVSHWIPQKVGGQMEGIRVSYISCG 405
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
+ H + SAG+ + ++G + G LG GD + P+ +ET +V
Sbjct: 406 AWHTAVVTSAGQLF--------TFGDGSFGALGHGDHITSNFPREVETLR---GLRTTKV 454
Query: 126 TCGSFHTALLTHRKRPNDMLES---------MCWTFGLGENGQLGHGTTQSALVPEQVKE 176
CG +HTA + N++ +S +T+G G+ G+LGHG + LVPE V
Sbjct: 455 ACGVWHTAAAV--EAINELSDSGTSASPSSRKLYTWGDGDKGRLGHGDNEPRLVPECVAA 512
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS----PIL 232
L + + V CG T +++AG V++ G S + G A + P
Sbjct: 513 LIEE-RICQVACGNDLTVALTTAGRVYTMG-----------STAYGQLGSATANGKLPTC 560
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ G + F + +VACG+ H ++T ++++WG+G +G LG G P IV
Sbjct: 561 VEGEIANS--FVE--EVACGSYHVAVLTSKN-EVYTWGKGLNGQLGHGDNNHRNTPTIV 614
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 114/264 (43%), Gaps = 33/264 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + G + + +AG L+ +G+ + G + S+F P V G KV
Sbjct: 398 RVSYISCGAWHTAVVTSAGQLFTFGDGSF--GALGHGDHITSNF-PREVETLRGLRTTKV 454
Query: 63 ACGSEHVVALVSA-------GETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
ACG H A V A G + Y+WG + G+LG GD E RL P+ +
Sbjct: 455 ACGVWHTAAAVEAINELSDSGTSASPSSRKLYTWGDGDKGRLGHGDNEPRLVPECVAALI 514
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
++ + +V CG+ T LT R +T G GQLG T L P V+
Sbjct: 515 EER---ICQVACGNDLTVALTTAGR--------VYTMGSTAYGQLGSATANGKL-PTCVE 562
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
++ V CG +H +V++S +V++WG KGL N L + +P ++
Sbjct: 563 GEIANSFVEEVACGSYHVAVLTSKNEVYTWG--KGL----NGQLGHGDNNHRNTPTIVD- 615
Query: 236 NGPHGPKFQDPVQVACGAAHTVLV 259
K + VACG+ TV++
Sbjct: 616 ----VLKDKQVKNVACGSKFTVVI 635
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 19/128 (14%)
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAG 225
AL+P+ + E + + + CG H +V+ G+++SWG E G LG A ++ +
Sbjct: 278 ALLPKAL-ESTVVLDVHGIACGGRHAVLVTRQGEIFSWGEESGGRLGHGVEADVSHPKII 336
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTGKTI 283
D +S + VACG HT VT G L++WG G G+LG G +
Sbjct: 337 DTLSGTNVE-------------LVACGEYHTCAVTLSG-DLYTWGDGTHNYGLLGHGSEV 382
Query: 284 DFFAPAIV 291
+ P V
Sbjct: 383 SHWIPQKV 390
>gi|357508731|ref|XP_003624654.1| Ankyrin repeat domain-containing protein [Medicago truncatula]
gi|124359292|gb|ABD28429.2| Regulator of chromosome condensation/beta-lactamase-inhibitor
protein II [Medicago truncatula]
gi|355499669|gb|AES80872.1| Ankyrin repeat domain-containing protein [Medicago truncatula]
Length = 1099
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 115/271 (42%), Gaps = 39/271 (14%)
Query: 7 VKAGGMMSLAIDNAGALWMWG-----NCPLPDSSTEGGFSLVSSFTPSPVWDFHG-HTVV 60
+ A S+A+ + G ++ WG PD G + V TP V G V+
Sbjct: 206 ISAAKFHSVALTDRGEVYTWGFGRGGRLGHPDFDIHSGQAAV--ITPRQVISGLGSRRVM 263
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A H V GE ++WG+N GQLG +++ P+ + T
Sbjct: 264 AIAAAKHHTVVATQGGE--------VFTWGSNREGQLGYTSVDTQPTPRRVSTLRS---- 311
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA--LVPEQVKELP 178
+ V + HTA+++ D+ E W G GQLG+GT+ SA P V+ L
Sbjct: 312 RIVAVAAANKHTAVIS------DLGEVFTW--GCNREGQLGYGTSNSASNYTPHVVESLK 363
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ L V +HT V+ S G+V++WG L +TRN P+
Sbjct: 364 GKI-LTRVSAAKYHTIVLGSDGEVFTWGHR--LVTPKRVVITRNLKKSGSIPLKF----- 415
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
H + V +A G AH++ +T+DG L+ W
Sbjct: 416 HRKERLHVVSIAAGMAHSMALTEDG-ALFYW 445
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 32/213 (15%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
+SWG+ N QLG G+ + P +++ N + ++ FH+ LT R
Sbjct: 171 FSWGSGANYQLGTGNAHIQKLPCKVDSLNGS---IIKLISAAKFHSVALTDRGE------ 221
Query: 147 SMCWTFGLGENGQLGH-----GTTQSALV-PEQVKELPQYVYLVSVDCGLFHTSVVSSAG 200
+T+G G G+LGH + Q+A++ P QV ++++ HT V + G
Sbjct: 222 --VYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVISGLGSRRVMAIAAAKHHTVVATQGG 279
Query: 201 DVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT 260
+V++WG + G S+ +S + V VA HT +++
Sbjct: 280 EVFTWGSNRE-GQLGYTSVDTQPTPRRVSTLR-----------SRIVAVAAANKHTAVIS 327
Query: 261 DDGYKLWSWGRGRSGVL--GTGKTIDFFAPAIV 291
D G ++++WG R G L GT + + P +V
Sbjct: 328 DLG-EVFTWGCNREGQLGYGTSNSASNYTPHVV 359
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 40/231 (17%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD------ 101
P V +G + ++ H VAL GE Y+WG G+LG D
Sbjct: 192 PCKVDSLNGSIIKLISAAKFHSVALTDRGE--------VYTWGFGRGGRLGHPDFDIHSG 243
Query: 102 RESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG 161
+ + + P+ + + V + HT + T +T+G GQLG
Sbjct: 244 QAAVITPR--QVISGLGSRRVMAIAAAKHHTVVATQGGE--------VFTWGSNREGQLG 293
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASL 219
+ + + P +V L + V+V HT+V+S G+V++WG E LG
Sbjct: 294 YTSVDTQPTPRRVSTLRSRI--VAVAAANKHTAVISDLGEVFTWGCNREGQLGYG----- 346
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG 270
T N A + ++ S G + +V+ HT+++ DG ++++WG
Sbjct: 347 TSNSASNYTPHVVESLKG------KILTRVSAAKYHTIVLGSDG-EVFTWG 390
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 139 KRPN---DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
+RP+ ++ + +++G G N QLG G +P +V L + + + FH+
Sbjct: 157 RRPDFGLSLVATELFSWGSGANYQLGTGNAHIQKLPCKVDSLNGSIIKL-ISAAKFHSVA 215
Query: 196 VSSAGDVWSWGMEKGLGL-CPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAA 254
++ G+V++WG +G L P+ + +A +ISG G + + +A
Sbjct: 216 LTDRGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVISGLGS-----RRVMAIAAAKH 270
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLG 278
HTV+ T G ++++WG R G LG
Sbjct: 271 HTVVATQGG-EVFTWGSNREGQLG 293
>gi|428170910|gb|EKX39831.1| hypothetical protein GUITHDRAFT_164838 [Guillardia theta CCMP2712]
Length = 1983
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 133/309 (43%), Gaps = 49/309 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS---SFTPSPVWDFHGHT 58
++I V G SLA G ++ WG + F V +F P PV + +
Sbjct: 1213 TKIVEVACGCEHSLARSFDGGVYAWGAGDRGQLGSLENFDCVKINYAFNPQPVLNLKRYF 1272
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
++ +ACG H + L S + SWGA GQLGL S+ P++++ + +
Sbjct: 1273 ILSIACGRWHNMTLTSERQVL--------SWGAGEFGQLGLDHNLSKGTPQMVKALDGRA 1324
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLES---MCWTFGLGENGQLGHGTTQSALVPEQVK 175
P ++ CG +H+A + LES + W G GQLGHG T+S P +
Sbjct: 1325 PC---KILCGGWHSAAI---------LESGKILLW--GKNVYGQLGHGDTKSCSAPRVNQ 1370
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILI 233
L + + G HT VV A V++ G ++ LGL + +N P+ I
Sbjct: 1371 YLRLEGKVRTAGLGANHTLVVMVANKVFAMGSNIDGQLGLDDPSRTGKN------VPVSI 1424
Query: 234 SG-NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
NG ++ QVA G H++ ++ G ++WSWG G LG D AP
Sbjct: 1425 EELNG------KNICQVAAGDQHSLALSVFG-EVWSWGGSPFGQLGHETITDKLAPT--- 1474
Query: 293 WPPLTEEFK 301
PL E K
Sbjct: 1475 --PLLERHK 1481
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 119/287 (41%), Gaps = 58/287 (20%)
Query: 23 LWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETY 79
++MWG N L + S E P V F V A G +H + L + G
Sbjct: 92 VFMWGDGENGKLGNQSEE------IQHVPYIVPAFRNVLVKVCALGKQHTLFLSADG--- 142
Query: 80 KGEDLVCYSWGANNNGQLGLGDRE-SRLRP--------------KIIETFNQDSPWAVYE 124
V S G+N GQLG+GD SR P II++ N +
Sbjct: 143 -----VVLSCGSNVYGQLGMGDHMLSRSTPVSEPSKQKSLDKLQAIIQSLNN-----IVG 192
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
+ G +H+ L ND + W G G G+LG G+ +A P V L Q +V
Sbjct: 193 IAAGYYHSLAL------NDTGKIFSW--GSGSWGKLGIGSDANAESPRFVASL-QNSKVV 243
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
+ CG HT+ +++ GDVW+WG KGL L + SP L + G +
Sbjct: 244 HIACGAHHTAAITTVGDVWTWG--KGL----RGQLGHKSVKEEFSPRLNASLRKCGAQ-- 295
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ CG HT+++ G +L+S G G LG G D P +V
Sbjct: 296 ---KIRCGDDHTLVILRSG-QLYSMGANTHGQLGLGDATDRIIPTLV 338
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 112/264 (42%), Gaps = 36/264 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I V G LA+ ++ WG+ ++ ++ P + +++ V
Sbjct: 1696 KIMKVACGTYHCLALTEEKRVYAWGDGKWGNAGVSNTNDVLE---PQELSSLAACSIIGV 1752
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
G H AL G+ + WG N+NGQLGLG S + N D V
Sbjct: 1753 HAGGFHSAALSQYGDLFM--------WGKNSNGQLGLGT-TSAAEDSPTKISNLDG--VV 1801
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG--TTQSALVPEQVKELPQY 180
+V+ G+ H+A+L PN +T GL NGQLG G +S L + Q
Sbjct: 1802 MDVSLGANHSAVLMQVTSPN------LFTCGLNANGQLGLGDFVDRSTLTAVDALDDRQ- 1854
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+VS CG HT+ VS GD+ +WG + L A L+++ P + +
Sbjct: 1855 --IVSASCGAAHTAAVSQYGDLITWGNGRNGQLGLKAGLSKDIENPVQLPAICN------ 1906
Query: 241 PKFQDP-VQVACGAAHTVLVTDDG 263
DP V+V CG T++V++ G
Sbjct: 1907 ----DPMVKVVCGQEVTIVVSEKG 1926
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 114/258 (44%), Gaps = 37/258 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF--TPSPVWDFHGHTVVK 61
I V AGG S A+ G L+MWG +S+ + G S+ +P+ + + G V+
Sbjct: 1749 IIGVHAGGFHSAALSQYGDLFMWGK----NSNGQLGLGTTSAAEDSPTKISNLDG-VVMD 1803
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
V+ G+ H L+ ++ G N NGQLGLGD R ++ +
Sbjct: 1804 VSLGANHSAVLMQVTSPN------LFTCGLNANGQLGLGDFVDRSTLTAVDALDDRQ--- 1854
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ +CG+ HTA ++ D++ T+G G NGQLG S + V +LP
Sbjct: 1855 IVSASCGAAHTAAVSQY---GDLI-----TWGNGRNGQLGLKAGLSKDIENPV-QLPAIC 1905
Query: 182 Y--LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+V V CG T VVS G+++ G E +GL N+S R +S + G
Sbjct: 1906 NDPMVKVVCGQEVTIVVSEKGELYMAGYESTIGLGGNSSRRREF---DVSFREVEG---- 1958
Query: 240 GPKFQDPVQVACGAAHTV 257
P Q+A G+ H +
Sbjct: 1959 ---LIQPTQIAVGSVHVL 1973
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 128/282 (45%), Gaps = 43/282 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+ I + A MS + ++G+L++ G + G + + TP + + ++K
Sbjct: 1643 TSIVHISANSDMSAFVTDSGSLYVSGGS---EHGRLGLGHMAPAPTPVEIRSLNTVKIMK 1699
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VACG+ H +AL E+ Y+WG G G+ + L P+ + + + +
Sbjct: 1700 VACGTYHCLALT--------EEKRVYAWGDGKWGNAGVSNTNDVLEPQELSSL---AACS 1748
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL-VPEQVKELPQY 180
+ V G FH+A L+ D+ + +G NGQLG GTT +A P ++ L
Sbjct: 1749 IIGVHAGGFHSAALSQY---GDL-----FMWGKNSNGQLGLGTTSAAEDSPTKISNLDGV 1800
Query: 181 VYLVSVDCGLFHTSVV--SSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGN 236
V VS+ G H++V+ ++ ++++ G+ LGL + A DA+ I
Sbjct: 1801 VMDVSL--GANHSAVLMQVTSPNLFTCGLNANGQLGLGDFVDRSTLTAVDALDDRQI--- 1855
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
V +CGAAHT V+ G L +WG GR+G LG
Sbjct: 1856 ----------VSASCGAAHTAAVSQYG-DLITWGNGRNGQLG 1886
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 92/212 (43%), Gaps = 33/212 (15%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y+WG NG+LG G P+ I +F ++ + EV CG H+ + +
Sbjct: 1182 YTWGCGVNGRLGHGFHTGYSTPQEITSFPSNTK--IVEVACGCEHSLARS--------FD 1231
Query: 147 SMCWTFGLGENGQLGH------GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAG 200
+ +G G+ GQLG A P+ V L +Y +++S+ CG +H ++S
Sbjct: 1232 GGVYAWGAGDRGQLGSLENFDCVKINYAFNPQPVLNLKRY-FILSIACGRWHNMTLTSER 1290
Query: 201 DVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVL 258
V SWG E G LGL N S + A+ + P ++ CG H+
Sbjct: 1291 QVLSWGAGEFGQLGLDHNLSKGTPQMVKALDG-------------RAPCKILCGGWHSAA 1337
Query: 259 VTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ + G K+ WG+ G LG G T AP +
Sbjct: 1338 ILESG-KILLWGKNVYGQLGHGDTKSCSAPRV 1368
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 124/329 (37%), Gaps = 64/329 (19%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHG--HTVV 60
IC V AG SLA+ G +W WG P E ++ P+P+ + H V
Sbjct: 1431 NICQVAAGDQHSLALSVFGEVWSWGGSPFGQLGHE---TITDKLAPTPLLERHKIPPDVK 1487
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+ACG A+ + GE ++WG +G+LG + P +I+ F++
Sbjct: 1488 SIACGYTFSAAMSAKGEV--------FTWGNGESGELGHAPKVLTYAPSLIKDFSE---- 1535
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++ CG H A + + R + + + +G+N G+ + V +
Sbjct: 1536 -VVQIACGFKHMAGIVFKPRMKTI--ELTGSSNIGDNSTTFSGSIAAGSVSGSTRSHTTG 1592
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGME-------KGLGLCPNASLTRNEAGDAISPI-- 231
+ F S G V+ WG + +GL + SL ++ +I I
Sbjct: 1593 HHTTRTSA--FSASNQKRHGCVFVWGEDTCGQLGIRGLQAARSPSLMQSLLATSIVHISA 1650
Query: 232 --------------LISGNGPHG-------PKFQDPVQ-----------VACGAAHTVLV 259
+SG HG PV+ VACG H + +
Sbjct: 1651 NSDMSAFVTDSGSLYVSGGSEHGRLGLGHMAPAPTPVEIRSLNTVKIMKVACGTYHCLAL 1710
Query: 260 TDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
T++ ++++WG G+ G G T D P
Sbjct: 1711 TEE-KRVYAWGDGKWGNAGVSNTNDVLEP 1738
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 90/211 (42%), Gaps = 29/211 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL---VSSFTPSPVWDFHGH 57
++ I + AG SLA+++ G ++ WG S + G + ++ +P V
Sbjct: 187 LNNIVGIAAGYYHSLALNDTGKIFSWG------SGSWGKLGIGSDANAESPRFVASLQNS 240
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +ACG+ H A+ + G+ ++WG GQLG + P++ + +
Sbjct: 241 KVVHIACGAHHTAAITTVGDV--------WTWGKGLRGQLGHKSVKEEFSPRLNASLRK- 291
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
++ CG HT ++ + ++ G +GQLG G ++P V
Sbjct: 292 --CGAQKIRCGDDHTLVI--------LRSGQLYSMGANTHGQLGLGDATDRIIPTLVTGF 341
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
++ +D + +++ G V+++G E
Sbjct: 342 ANE-KVIDIDAKGCRSIALTNTGKVFAFGNE 371
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 92/226 (40%), Gaps = 20/226 (8%)
Query: 78 TYKGEDLVCYSWGANNNGQLGLG---DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTAL 134
+YK + +SW + G++ ++++R E FN+ + + +
Sbjct: 1100 SYKDDQRFYFSWPPSITGEIAKAKNDEKKARAGGPFKEYFNRLNIGRILQCLVRYSEKKH 1159
Query: 135 LTH-RKRPNDMLE------SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVD 187
R R N E +T+G G NG+LGHG P+++ P +V V
Sbjct: 1160 FEQIRDRANKRYEVDLEGEYHIYTWGCGVNGRLGHGFHTGYSTPQEITSFPSNTKIVEVA 1219
Query: 188 CGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
CG H+ S G V++WG ++G LG N + P+L K
Sbjct: 1220 CGCEHSLARSFDGGVYAWGAGDRGQLGSLENFDCVKINYAFNPQPVL-------NLKRYF 1272
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +ACG H + +T + ++ SWG G G LG + P +V
Sbjct: 1273 ILSIACGRWHNMTLTSE-RQVLSWGAGEFGQLGLDHNLSKGTPQMV 1317
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 122/296 (41%), Gaps = 60/296 (20%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS-----FTPSPVWDFHGHT 58
+ + G + A+ + G ++ WG S +G L S P V D H
Sbjct: 555 VVFIACGKDSTAALTDTGKVYTWGK------SAQGKLGLGSGKPLAIVVPQLVQDLSSHV 608
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL-RPKIIETFNQD 117
V +++ G H + + +K + WG+N GQLG+ S + P I + +
Sbjct: 609 VCQISLGRNHAAC---STDMHK-----FFVWGSNTFGQLGIPHISSYMPDPYEITSLREA 660
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ + + CG +HT + T+ + G G +GQLGHG +S + K L
Sbjct: 661 N---IRSIACGGWHTLISTN--------TGSVMSCGKGWHGQLGHGDYES--LTALSKTL 707
Query: 178 PQY---------VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
P + ++V V G ++ +++ G +++WG L +S +NEA
Sbjct: 708 PYFKKIVEGFGDSFIVKVSAGKESSAAITNKGRLFTWGKGDEYQLGHESS--KNEAY--- 762
Query: 229 SPILISGNGPHGPKFQDPVQV---ACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
P +F ++V + G +H + + G +SWG G +G LG G+
Sbjct: 763 ---------PREVEFFAKIRVVDVSIGDSHMLALDYSGLP-YSWGNGSAGQLGHGE 808
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 126/328 (38%), Gaps = 78/328 (23%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ S+ G S A+ G ++ WGN +S G V ++ PS + DF VV++A
Sbjct: 1486 VKSIACGYTFSAAMSAKGEVFTWGN---GESGELGHAPKVLTYAPSLIKDFS--EVVQIA 1540
Query: 64 CGSEHVVALVS---------AGETYKGEDLVCYS-------------------------- 88
CG +H+ +V G + G++ +S
Sbjct: 1541 CGFKHMAGIVFKPRMKTIELTGSSNIGDNSTTFSGSIAAGSVSGSTRSHTTGHHTTRTSA 1600
Query: 89 --------------WGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTAL 134
WG + GQLG+ ++ P ++++ S + ++ S +A
Sbjct: 1601 FSASNQKRHGCVFVWGEDTCGQLGIRGLQAARSPSLMQSLLATS---IVHISANSDMSAF 1657
Query: 135 LTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTS 194
+T + G E+G+LG G A P +++ L V ++ V CG +H
Sbjct: 1658 VTD--------SGSLYVSGGSEHGRLGLGHMAPAPTPVEIRSL-NTVKIMKVACGTYHCL 1708
Query: 195 VVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAA 254
++ V++WG G NA ++ D + P +S + V G
Sbjct: 1709 ALTEEKRVYAWGD----GKWGNAGVSNTN--DVLEPQELSSLAA-----CSIIGVHAGGF 1757
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
H+ ++ G L+ WG+ +G LG G T
Sbjct: 1758 HSAALSQYG-DLFMWGKNSNGQLGLGTT 1784
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 79/204 (38%), Gaps = 29/204 (14%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S++ + G + AI G +W WG G S+ F+P K
Sbjct: 240 SKVVHIACGAHHTAAITTVGDVWTWGKGL---RGQLGHKSVKEEFSPRLNASLRKCGAQK 296
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ CG +H + ++ +G+ YS GAN +GQLGLGD R+ P ++ F +
Sbjct: 297 IRCGDDHTLVILRSGQ--------LYSMGANTHGQLGLGDATDRIIPTLVTGFANEK--- 345
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V ++ + LT+ + + FG L +P V LP+
Sbjct: 346 VIDIDAKGCRSIALTNTGK--------VFAFGNETEPHLNR-------IPRFVAGLPKSD 390
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSW 205
+++V +S G ++ W
Sbjct: 391 LIIAVARTAHFDFAISDTGQLFRW 414
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 114/282 (40%), Gaps = 40/282 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I +V AI + G L+ W P SS E ++ SF VV++
Sbjct: 392 IIAVARTAHFDFAISDTGQLFRW----RPFSSEEESSRMLESFHAIK-------GVVRMF 440
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H+ A++ + E + ++ + + + + E KI+ ++ +
Sbjct: 441 CGHNHM-AVICSPEMGCTQAMISRNKSTSFSSDISRASLEKFPSEKILPALGTNTEY--- 496
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG-----TTQSALVPEQVKELP 178
F T + R P+ + +T+G G G+LGHG + +S P++++ L
Sbjct: 497 ---LDEFATVQV--RDSPSREGDGYIYTYGKGVFGRLGHGVEYTRSEESVKHPKRIETLA 551
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + +V + CG T+ ++ G V++WG + LGL L + P L+
Sbjct: 552 K-MSVVFIACGKDSTAALTDTGKVYTWGKSAQGKLGLGSGKPLA------IVVPQLVQDL 604
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
H Q++ G H TD +K + WG G LG
Sbjct: 605 SSH-----VVCQISLGRNHAACSTDM-HKFFVWGSNTFGQLG 640
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 52/113 (46%), Gaps = 14/113 (12%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S I V AG S AI N G L+ WG D G S + P V F VV
Sbjct: 720 SFIVKVSAGKESSAAITNKGRLFTWGK---GDEYQLGHESSKNEAYPREVEFFAKIRVVD 776
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG---DRESRLRPKII 111
V+ G H++AL +G + YSWG + GQLG G +RE+ RP ++
Sbjct: 777 VSIGDSHMLALDYSG--------LPYSWGNGSAGQLGHGEMCERETLPRPIML 821
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 25/165 (15%)
Query: 140 RPNDMLE-SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVV 196
R N L+ S + +G GENG+LG+ + + VP V P + ++ C L HT +
Sbjct: 82 RENIELQGSHVFMWGDGENGKLGNQSEEIQHVPYIV---PAFRNVLVKVCALGKQHTLFL 138
Query: 197 SSAGDVWSWGM----EKGLG------LCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 246
S+ G V S G + G+G P + ++ ++ D + I+ S N +
Sbjct: 139 SADGVVLSCGSNVYGQLGMGDHMLSRSTPVSEPSKQKSLDKLQAIIQSLN--------NI 190
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V +A G H++ + D G K++SWG G G LG G + +P V
Sbjct: 191 VGIAAGYYHSLALNDTG-KIFSWGSGSWGKLGIGSDANAESPRFV 234
>gi|383851572|ref|XP_003701306.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like
[Megachile rotundata]
Length = 864
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 113/240 (47%), Gaps = 39/240 (16%)
Query: 44 SSFTPSPVWD--FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD 101
SS +P V+D G ++++A GS H +AL+S G + +WG+N GQLGL D
Sbjct: 201 SSSSPVLVYDAGLAGSKILQLAAGSHHSLALISDGGVF--------AWGSNLEGQLGLPD 252
Query: 102 RESRL-RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQL 160
+ +P + P V +++ G +H+A LT + + G E+G+L
Sbjct: 253 VSGLVNKPTKVHI-----PEPVKQISAGYYHSAFLTES--------GLVYICGESESGKL 299
Query: 161 GHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNAS 218
G S + + +LP V V CG HT V++ G+++ G LGL N +
Sbjct: 300 GIDVNFSTQITPKQMQLPSPA--VHVACGGHHTVVLAENGNIYCTGSNSNGQLGLGTNVT 357
Query: 219 LTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
+ +P L+S +++CG +HT +VT+ G KL++ G GR G LG
Sbjct: 358 -------ELHTPKLLSRGMLQNETIS---RISCGESHTAIVTESG-KLFTCGDGRHGKLG 406
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 101/252 (40%), Gaps = 59/252 (23%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV + CG EH + +G + +G+N+ GQLGLG R +P ++
Sbjct: 109 VVSITCGDEHSAVICQSGR--------LFVFGSNDWGQLGLGHRNHISKPSCVKVL---K 157
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P V V CG HT + T ++ + G + GQLG GT+ P
Sbjct: 158 PEKVTHVACGRAHTLISTGAQK--------IFACGSDQEGQLGRGTSAIG----DSSSSP 205
Query: 179 QYVY--------LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAI 228
VY ++ + G H+ + S G V++WG +E LGL + L
Sbjct: 206 VLVYDAGLAGSKILQLAAGSHHSLALISDGGVFAWGSNLEGQLGLPDVSGLV-------- 257
Query: 229 SPILISGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLG--------- 278
N P +PV Q++ G H+ +T+ G ++ G SG LG
Sbjct: 258 -------NKPTKVHIPEPVKQISAGYYHSAFLTESGL-VYICGESESGKLGIDVNFSTQI 309
Query: 279 TGKTIDFFAPAI 290
T K + +PA+
Sbjct: 310 TPKQMQLPSPAV 321
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 109/269 (40%), Gaps = 54/269 (20%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL--VSSFTPSPVWDFHGHTV 59
S+I + AG SLA+ + G ++ WG S+ EG L VS P V
Sbjct: 216 SKILQLAAGSHHSLALISDGGVFAWG------SNLEGQLGLPDVSGLVNKPTKVHIPEPV 269
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
+++ G H L +G Y +C G + +G+LG+ + +++ PK ++
Sbjct: 270 KQISAGYYHSAFLTESGLVY-----IC---GESESGKLGIDVNFSTQITPKQMQL----- 316
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV--KE 176
P V CG HT +L + G NGQLG GT + L ++ +
Sbjct: 317 PSPAVHVACGGHHTVVLAEN--------GNIYCTGSNSNGQLGLGTNVTELHTPKLLSRG 368
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ Q + + CG HT++V+ +G +++ G G L NE N
Sbjct: 369 MLQNETISRISCGESHTAIVTESGKLFTCGD----GRHGKLGLEENE------------N 412
Query: 237 GPHGPKFQDPV------QVACGAAHTVLV 259
H F +VACG HT+L+
Sbjct: 413 NVHELTFVQRYKELFVSKVACGGCHTILL 441
>gi|222623461|gb|EEE57593.1| hypothetical protein OsJ_07959 [Oryza sativa Japonica Group]
Length = 976
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 137/301 (45%), Gaps = 44/301 (14%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL--------VSSFTPSPVW- 52
+++ ++ G + A+ +G L+ WG EG L S + P ++
Sbjct: 255 TRVKAIAFGAKHTCAVSISGELYEWG---------EGTHCLGLWGDQYQRSQWFPHKLFG 305
Query: 53 DFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE 112
G +++K+ACG H + SAG+ + ++G G LG GD + RPK +E
Sbjct: 306 PLDGISILKIACGHWHTAIISSAGQLF--------AYGDGTFGVLGHGDTLTVARPKQVE 357
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHR--KRPNDMLESMCWTFGLGENGQLGHGTTQSALV 170
+ A+ CG +HTA + R ++ +T+G + G+LGH + LV
Sbjct: 358 SLKGVRAKAI---ACGPWHTAAIVERMGTVKSNAPSGKLFTWGDADRGKLGHADKKMKLV 414
Query: 171 PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP 230
P V+ L + + V C T V++ G V++ G ++ L N + S
Sbjct: 415 PTCVEPLNDFDF-AQVSCAKAQTIVLTITGVVFTIGSKEHGRL-------GNPLSEDTSI 466
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
LI GP +F +++ G++H ++T +G K+++WG+G G LG G +D P +
Sbjct: 467 CLI--EGPLKTEFVR--EISSGSSHIAVLTMNG-KVFTWGKGTEGQLGLGDYVDRSYPTL 521
Query: 291 V 291
V
Sbjct: 522 V 522
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 111/280 (39%), Gaps = 42/280 (15%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
+++WG P + G S + P + H V VACG +H + GE +
Sbjct: 170 IFVWGEVP-GNVLDHGDVSKANVSLPRLLNTTHIIDVQSVACGEKHAAIVTKQGEVF--- 225
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPN 142
SWG +N G+LG S PKIIE+ + V + G+ HT ++
Sbjct: 226 -----SWGVDNGGRLGHKVSVSVSDPKIIESL---ASTRVKAIAFGAKHTCAVS---ISG 274
Query: 143 DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV 202
++ E W G G G +S P ++ + ++ + CG +HT+++SSAG +
Sbjct: 275 ELYE---WGEGTHCLGLWGDQYQRSQWFPHKLFGPLDGISILKIACGHWHTAIISSAGQL 331
Query: 203 WSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT 260
+++ G LG ++ R + +++ + +ACG HT +
Sbjct: 332 FAYGDGTFGVLGHGDTLTVARPKQVESLKGVRAKA-------------IACGPWHTAAIV 378
Query: 261 DD---------GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ KL++WG G LG P V
Sbjct: 379 ERMGTVKSNAPSGKLFTWGDADRGKLGHADKKMKLVPTCV 418
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +++ GS H+ L G+ + +WG GQLGLGD R P ++E
Sbjct: 478 VREISSGSSHIAVLTMNGKVF--------TWGKGTEGQLGLGDYVDRSYPTLVEALEDKQ 529
Query: 119 PWAVYEVTCG-SFHTALLTHR 138
V+ + CG +F A+ HR
Sbjct: 530 ---VHSIACGFNFTMAICLHR 547
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 93/263 (35%), Gaps = 57/263 (21%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G + I +AG L+ +G+ G ++ P V G +A
Sbjct: 312 ILKIACGHWHTAIISSAGQLFAYGDGTF---GVLGHGDTLTVARPKQVESLKGVRAKAIA 368
Query: 64 CGSEHVVALVSAGETYKGEDLV--CYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
CG H A+V T K ++WG + G+LG D++ +L P +E N +
Sbjct: 369 CGPWHTAAIVERMGTVKSNAPSGKLFTWGDADRGKLGHADKKMKLVPTCVEPLND---FD 425
Query: 122 VYEVTCGSFHTALLT------------HRKRPNDMLE--SMC------------------ 149
+V+C T +LT H + N + E S+C
Sbjct: 426 FAQVSCAKAQTIVLTITGVVFTIGSKEHGRLGNPLSEDTSICLIEGPLKTEFVREISSGS 485
Query: 150 ------------WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
+T+G G GQLG G P V+ L + S+ CG T +
Sbjct: 486 SHIAVLTMNGKVFTWGKGTEGQLGLGDYVDRSYPTLVEALEDK-QVHSIACGFNFTMAIC 544
Query: 198 SAGDVWSWGMEKGLGLCPNASLT 220
+ S K +C N LT
Sbjct: 545 LHRPLSS----KDQSVCSNCQLT 563
>gi|196002709|ref|XP_002111222.1| hypothetical protein TRIADDRAFT_54961 [Trichoplax adhaerens]
gi|190587173|gb|EDV27226.1| hypothetical protein TRIADDRAFT_54961 [Trichoplax adhaerens]
Length = 575
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 104/239 (43%), Gaps = 37/239 (15%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+V +ACGS+ A+ +GE + +WG G LG GD E+ PK +E F
Sbjct: 348 IVDIACGSDSSAAISDSGELF--------TWGCGFQGCLGHGDTETYKLPKKVEAFKD-- 397
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ V +V CG +H + ++ R W++G G GQLG+G + + L P V++LP
Sbjct: 398 -YHVSKVACGCWHMLAIVNQNR--------IWSWGHGHYGQLGNGQSANCLQPILVEQLP 448
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI--SPILISGN 236
++ V CG + +S G +WSWG N NE I P L+
Sbjct: 449 HILW-AKVICGWDISFALSQDGYIWSWGY--------NGDFMVNECSRLIVDEPQLLYRL 499
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI---DFFAPAIVL 292
K D C H V + DG +L+ WG G LG G I +F P L
Sbjct: 500 ADQDKKIVDLGASNC---HCVALAADG-ELYLWGANDKGRLGNGSDIKDCNFPKPCTAL 554
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 34/167 (20%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P V F + V KVACG H++A+V+ +SWG + GQLG G + L+
Sbjct: 389 PKKVEAFKDYHVSKVACGCWHMLAIVNQNRI--------WSWGHGHYGQLGNGQSANCLQ 440
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
P ++E WA +V CG + L+ + W++G NG
Sbjct: 441 PILVEQLPH-ILWA--KVICGWDISFALSQ--------DGYIWSWGY--NGDFMVNECSR 487
Query: 168 ALVPEQVKELPQYVYLVS------VDCGL--FHTSVVSSAGDVWSWG 206
+V E PQ +Y ++ VD G H +++ G+++ WG
Sbjct: 488 LIVDE-----PQLLYRLADQDKKIVDLGASNCHCVALAADGELYLWG 529
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 94/224 (41%), Gaps = 32/224 (14%)
Query: 87 YSWGANNNGQLGLGD--RESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDM 144
Y+WGAN QLG + ++ L P + E + P +T G T ++T ND
Sbjct: 182 YAWGANRYSQLGGINLKEDTVLVPTVNEIMSNLKP---NMMTAGLGCTFIVT-----NDG 233
Query: 145 LESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+C G G++G+LG GT ++P + + S CG H ++ G V S
Sbjct: 234 CIYVC---GHGQDGRLGLGTVNHVVIPRPIHLKVFITKVASFYCGQ-HALALTGNGIVLS 289
Query: 205 WGM----EKGLGLC---PNASLTRNEAGDAISPI----------LISGNGPHGPKFQDPV 247
WG + G G C + L + + P+ + S + V
Sbjct: 290 WGSNIYGQLGHGHCRYFTASQLATMSSCNISKPLLSFFFLNLLWMESYMVIDTISSKHIV 349
Query: 248 QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ACG+ + ++D G +L++WG G G LG G T + P V
Sbjct: 350 DIACGSDSSAAISDSG-ELFTWGCGFQGCLGHGDTETYKLPKKV 392
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
++V + CG ++ +S +G++++WG + LG + + +A +S
Sbjct: 347 HIVDIACGSDSSAAISDSGELFTWGCGFQGCLGHGDTETYKLPKKVEAFKDYHVS----- 401
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
+VACG H + + + ++WSWG G G LG G++ + P +V P
Sbjct: 402 --------KVACGCWHMLAIVNQN-RIWSWGHGHYGQLGNGQSANCLQPILVEQLP 448
>gi|375010994|ref|YP_004987982.1| Regulator of chromosome condensation (RCC1) repeat protein
[Owenweeksia hongkongensis DSM 17368]
gi|359346918|gb|AEV31337.1| Regulator of chromosome condensation (RCC1) repeat protein
[Owenweeksia hongkongensis DSM 17368]
Length = 440
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 126/288 (43%), Gaps = 38/288 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ +I + G SLAID G +W WG ++ + G ++ F +P + +
Sbjct: 67 LPKIKIIARGYDHSLAIDEQGRVWAWGR----NNYGQLGSAIPIDFN-TPQLVVNHRDFI 121
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V G H VAL ED ++WG N G+LG G RE P+ + ++ +
Sbjct: 122 SVEGGHWHTVAL--------KEDGTVWTWGHNFYGELGDGTREHSQYPRSVVKKDKTTLQ 173
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ ++ +HT L +++G + G+LGH E+V+ L
Sbjct: 174 GIVKIVSVGYHTLALDKNGE--------VYSWGSNDFGELGHFHNVIQHYAEKVEGLQN- 224
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ S+ G H+ ++ G+++ WG + ++ R D + I+ + P
Sbjct: 225 --IKSIAVGWHHSVAINENGELFMWGSDP-------STQVRESTSDHFNSIVKIDSLP-- 273
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
V++ACG+ H++ + + G ++W WG R G+LGT TI + P
Sbjct: 274 ----PMVKIACGSWHSLAIDETG-QVWGWGNNRYGMLGTKDTISYTYP 316
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 30/176 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPD--SSTEGGFSLVSSFTPSPVWDFHGHT 58
+ I S+ G S+AI+ G L+MWG+ P ST F+ + P
Sbjct: 222 LQNIKSIAVGWHHSVAINENGELFMWGSDPSTQVRESTSDHFNSIVKIDSLP-------P 274
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+VK+ACGS H +A+ G+ + WG N G LG D S PK I F
Sbjct: 275 MVKIACGSWHSLAIDETGQ--------VWGWGNNRYGMLGTKDTISYTYPKKIPGFK--- 323
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
+ E+ G F + + + +TFG +GQ G G VP ++
Sbjct: 324 --GIEEIGGGCFQSLAIDKKGD--------FYTFGGNASGQQGQGDFAYIFVPTKL 369
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 19/133 (14%)
Query: 149 CWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+T G GQ+G T + P V+ LP+ + + G H+ + G VW+WG
Sbjct: 39 VFTMGRNNYGQIGDSTYEDHNTPYHVERLPK---IKIIARGYDHSLAIDEQGRVWAWG-- 93
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPH-GPKFQDPVQVACGAAHTVLVTDDGYKLW 267
RN G S I I N P +D + V G HTV + +DG +W
Sbjct: 94 ------------RNNYGQLGSAIPIDFNTPQLVVNHRDFISVEGGHWHTVALKEDG-TVW 140
Query: 268 SWGRGRSGVLGTG 280
+WG G LG G
Sbjct: 141 TWGHNFYGELGDG 153
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 107/293 (36%), Gaps = 52/293 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNC---PLPDSSTEGGFSLVSSFTPSPVWDFHGHT-- 58
SV+ G ++A+ G +W WG+ L D + E S P V T
Sbjct: 120 FISVEGGHWHTVALKEDGTVWTWGHNFYGELGDGTRE------HSQYPRSVVKKDKTTLQ 173
Query: 59 -VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+VK+ H +AL GE YSWG+N+ G+LG + + +E
Sbjct: 174 GIVKIVSVGYHTLALDKNGE--------VYSWGSNDFGELGHFHNVIQHYAEKVEGLQN- 224
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ + G H+ + N+ E W G + Q+ T+ ++ L
Sbjct: 225 ----IKSIAVGWHHSVAI------NENGELFMW--GSDPSTQVRESTSDHFNSIVKIDSL 272
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P +V + CG +H+ + G VW WG N G + IS
Sbjct: 273 PP---MVKIACGSWHSLAIDETGQVWGWG--------------NNRYGMLGTKDTISYTY 315
Query: 238 PHG-PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA 289
P P F+ ++ G ++ + G +++G SG G G F P
Sbjct: 316 PKKIPGFKGIEEIGGGCFQSLAIDKKG-DFYTFGGNASGQQGQGDFAYIFVPT 367
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 37/210 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ I + + G +LA+D G ++ WG+ D G F V V +
Sbjct: 172 LQGIVKIVSVGYHTLALDKNGEVYSWGSN---DFGELGHFHNVIQHYAEKVEGL--QNIK 226
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ---- 116
+A G H VA+ GE + WG+ D +++R + FN
Sbjct: 227 SIAVGWHHSVAINENGE--------LFMWGS---------DPSTQVRESTSDHFNSIVKI 269
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
DS + ++ CGS+H+ + + W +G G LG T S P K+
Sbjct: 270 DSLPPMVKIACGSWHSLAIDETGQ--------VWGWGNNRYGMLGTKDTISYTYP---KK 318
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+P + + + G F + + GD +++G
Sbjct: 319 IPGFKGIEEIGGGCFQSLAIDKKGDFYTFG 348
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 84/221 (38%), Gaps = 41/221 (18%)
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
V G+ H + L G+ ++ G NN GQ+G E P +E +
Sbjct: 23 VDAGNGHAIVLDKDGK--------VFTMGRNNYGQIGDSTYEDHNTPYHVERLPK----- 69
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+ + G H+ + + R W +G GQLG P+ V +
Sbjct: 70 IKIIARGYDHSLAIDEQGR--------VWAWGRNNYGQLGSAIPIDFNTPQLVVNHRDF- 120
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNG 237
+SV+ G +HT + G VW+WG E G G ++ R+ + +
Sbjct: 121 --ISVEGGHWHTVALKEDGTVWTWGHNFYGELGDGTREHSQYPRSVVKKDKTTL------ 172
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
Q V++ HT+ + +G +++SWG G LG
Sbjct: 173 ------QGIVKIVSVGYHTLALDKNG-EVYSWGSNDFGELG 206
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP-HGPKFQ 244
VD G H V+ G V++ G RN G N P H +
Sbjct: 23 VDAGNGHAIVLDKDGKVFTMG--------------RNNYGQIGDSTYEDHNTPYHVERLP 68
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+A G H++ + + G ++W+WGR G LG+ IDF P +V+
Sbjct: 69 KIKIIARGYDHSLAIDEQG-RVWAWGRNNYGQLGSAIPIDFNTPQLVV 115
>gi|222616116|gb|EEE52248.1| hypothetical protein OsJ_34191 [Oryza sativa Japonica Group]
Length = 425
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 129/314 (41%), Gaps = 66/314 (21%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFS-----LVSSFTPSPVWDFHGH 57
++ V AG S A+ G L+ WG +SS + G +VS TP V
Sbjct: 126 KVVEVSAGNHHSCAVTADGKLFAWGR----NSSGQLGLGKRAGKVVS--TPRKVDCLADA 179
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL---------RP 108
V VA GSEH +A GE SWGA G+LG G + S L P
Sbjct: 180 RVKMVALGSEHSIATTEEGEVL--------SWGAAGAGRLGHGHKTSILGFSITTSEYTP 231
Query: 109 KIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA 168
++I+ + + + G H+A + + F G+ + G G +
Sbjct: 232 RLIKNLDGVK---IKRIAAGMLHSACIDEKGT----------LFIFGQKTEKGFGRSGDE 278
Query: 169 LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
L P V+E+P + V CG +HT VV+ +GD++SWG + N L
Sbjct: 279 LRPTVVEEVP---FSEEVACGGYHTCVVTDSGDLYSWGSNE------NGCLGLGGTDMVR 329
Query: 229 SPILISGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWSW----------GRGRSGVL 277
SP ++ + F+ PV +V+CG HT +++ W W G G L
Sbjct: 330 SPEVLKSS-----LFKFPVSKVSCGWKHTAVISGGDIYTWGWGGANGTFFEEGHSSGGQL 384
Query: 278 GTGKTIDFFAPAIV 291
G G +D+F P +V
Sbjct: 385 GHGNDVDYFEPMMV 398
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 95/230 (41%), Gaps = 34/230 (14%)
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY-----EVT 126
++S+GE G V WG + G+LG+G ESR P F P +
Sbjct: 20 MLSSGEPAAGRRRVAALWGNGDYGRLGMGALESRWSPTACPFFLTGRPGDDDDDPPASLA 79
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS-ALVPEQVKELPQYVYLVS 185
CG HT LT R + GL + GQLG G++ + +L P +V + V V
Sbjct: 80 CGGAHTLFLTESGR--------VFAAGLNDFGQLGIGSSVTHSLEPIEVSGFDEKV--VE 129
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V G H+ V++ G +++WG GLG ++ D ++ +
Sbjct: 130 VSAGNHHSCAVTADGKLFAWGRNSSGQLGLGKRAGKVVSTPRKVDCLADARVK------- 182
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
VA G+ H++ T++G L SWG +G LG G +I
Sbjct: 183 ------MVALGSEHSIATTEEGEVL-SWGAAGAGRLGHGHKTSILGFSIT 225
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 85/198 (42%), Gaps = 23/198 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS-SFTPSPVWDFHGHTVVK 61
+I + AG + S ID G L+++G TE GF P+ V + +
Sbjct: 241 KIKRIAAGMLHSACIDEKGTLFIFGQ------KTEKGFGRSGDELRPTVVEEVP--FSEE 292
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VACG H + +G+ YSWG+N NG LGLG + P+++++ P
Sbjct: 293 VACGGYHTCVVTDSGD--------LYSWGSNENGCLGLGGTDMVRSPEVLKSSLFKFP-- 342
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTF---GLGENGQLGHGTTQSALVPEQVKELP 178
V +V+CG HTA+++ TF G GQLGHG P V E
Sbjct: 343 VSKVSCGWKHTAVISGGDIYTWGWGGANGTFFEEGHSSGGQLGHGNDVDYFEPMMV-EFG 401
Query: 179 QYVYLVSVDCGLFHTSVV 196
+ V V CG HT +
Sbjct: 402 KNARAVHVSCGFNHTGAI 419
>gi|41052709|dbj|BAD07566.1| putative ZR1 protein [Oryza sativa Japonica Group]
gi|50251941|dbj|BAD27877.1| putative ZR1 protein [Oryza sativa Japonica Group]
Length = 978
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 137/301 (45%), Gaps = 44/301 (14%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL--------VSSFTPSPVW- 52
+++ ++ G + A+ +G L+ WG EG L S + P ++
Sbjct: 257 TRVKAIAFGAKHTCAVSISGELYEWG---------EGTHCLGLWGDQYQRSQWFPHKLFG 307
Query: 53 DFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE 112
G +++K+ACG H + SAG+ + ++G G LG GD + RPK +E
Sbjct: 308 PLDGISILKIACGHWHTAIISSAGQLF--------AYGDGTFGVLGHGDTLTVARPKQVE 359
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHR--KRPNDMLESMCWTFGLGENGQLGHGTTQSALV 170
+ A+ CG +HTA + R ++ +T+G + G+LGH + LV
Sbjct: 360 SLKGVRAKAI---ACGPWHTAAIVERMGTVKSNAPSGKLFTWGDADRGKLGHADKKMKLV 416
Query: 171 PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP 230
P V+ L + + V C T V++ G V++ G ++ L N + S
Sbjct: 417 PTCVEPLNDFDF-AQVSCAKAQTIVLTITGVVFTIGSKEHGRL-------GNPLSEDTSI 468
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
LI GP +F +++ G++H ++T +G K+++WG+G G LG G +D P +
Sbjct: 469 CLI--EGPLKTEFVR--EISSGSSHIAVLTMNG-KVFTWGKGTEGQLGLGDYVDRSYPTL 523
Query: 291 V 291
V
Sbjct: 524 V 524
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 111/280 (39%), Gaps = 42/280 (15%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
+++WG P + G S + P + H V VACG +H + GE +
Sbjct: 172 IFVWGEVP-GNVLDHGDVSKANVSLPRLLNTTHIIDVQSVACGEKHAAIVTKQGEVF--- 227
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPN 142
SWG +N G+LG S PKIIE+ + V + G+ HT ++
Sbjct: 228 -----SWGVDNGGRLGHKVSVSVSDPKIIESL---ASTRVKAIAFGAKHTCAVS---ISG 276
Query: 143 DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV 202
++ E W G G G +S P ++ + ++ + CG +HT+++SSAG +
Sbjct: 277 ELYE---WGEGTHCLGLWGDQYQRSQWFPHKLFGPLDGISILKIACGHWHTAIISSAGQL 333
Query: 203 WSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT 260
+++ G LG ++ R + +++ + +ACG HT +
Sbjct: 334 FAYGDGTFGVLGHGDTLTVARPKQVESLKGVRAKA-------------IACGPWHTAAIV 380
Query: 261 DD---------GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ KL++WG G LG P V
Sbjct: 381 ERMGTVKSNAPSGKLFTWGDADRGKLGHADKKMKLVPTCV 420
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +++ GS H+ L G+ + +WG GQLGLGD R P ++E
Sbjct: 480 VREISSGSSHIAVLTMNGKVF--------TWGKGTEGQLGLGDYVDRSYPTLVEALEDKQ 531
Query: 119 PWAVYEVTCG-SFHTALLTHR 138
V+ + CG +F A+ HR
Sbjct: 532 ---VHSIACGFNFTMAICLHR 549
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 93/263 (35%), Gaps = 57/263 (21%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I + G + I +AG L+ +G+ G ++ P V G +A
Sbjct: 314 ILKIACGHWHTAIISSAGQLFAYGDGTF---GVLGHGDTLTVARPKQVESLKGVRAKAIA 370
Query: 64 CGSEHVVALVSAGETYKGEDLV--CYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
CG H A+V T K ++WG + G+LG D++ +L P +E N +
Sbjct: 371 CGPWHTAAIVERMGTVKSNAPSGKLFTWGDADRGKLGHADKKMKLVPTCVEPLND---FD 427
Query: 122 VYEVTCGSFHTALLT------------HRKRPNDMLE--SMC------------------ 149
+V+C T +LT H + N + E S+C
Sbjct: 428 FAQVSCAKAQTIVLTITGVVFTIGSKEHGRLGNPLSEDTSICLIEGPLKTEFVREISSGS 487
Query: 150 ------------WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
+T+G G GQLG G P V+ L + S+ CG T +
Sbjct: 488 SHIAVLTMNGKVFTWGKGTEGQLGLGDYVDRSYPTLVEALEDK-QVHSIACGFNFTMAIC 546
Query: 198 SAGDVWSWGMEKGLGLCPNASLT 220
+ S K +C N LT
Sbjct: 547 LHRPLSS----KDQSVCSNCQLT 565
>gi|145536544|ref|XP_001453994.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421738|emb|CAK86597.1| unnamed protein product [Paramecium tetraurelia]
Length = 229
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 41/214 (19%)
Query: 91 ANNNGQLGLGDRESRLR----PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
A+N GQLGLG + PKI +V+CG HTALLT
Sbjct: 13 ADNEGQLGLGKNRGSSQYYHIPKICHY-----KIGFIQVSCGKDHTALLTQNGHV----- 62
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G E+ +LGH QS P+++++L + ++ V CG HT+ V+S G +++WG
Sbjct: 63 ---YTMGCNEHNKLGHANKQSLYAPQRIEQLNK---VIQVSCGSTHTACVTSDGSLFTWG 116
Query: 207 MEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
LG+ N +L R +S + + +QV+CG HT+++T D
Sbjct: 117 DNSCGQLGVKQNGNLNR------VSTL------------TNCIQVSCGNKHTLVLT-DAQ 157
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTE 298
+ + +G LG + F P + P L +
Sbjct: 158 ECFGFGLNDDSQLGISRLKTVFEPTKIKLPSLQQ 191
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 41/204 (20%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++V+CG +H L G Y + G N + +LG +++S P+ IE N+
Sbjct: 44 IQVSCGKDHTALLTQNGHVY--------TMGCNEHNKLGHANKQSLYAPQRIEQLNK--- 92
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V+CGS HTA +T ++ C G+ +NG L +T +
Sbjct: 93 --VIQVSCGSTHTACVTSDGSLFTWGDNSCGQLGVKQNGNLNRVSTLTN----------- 139
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ V CG HT V++ A + + G GL ++ L + P I
Sbjct: 140 ---CIQVSCGNKHTLVLTDAQECF------GFGLNDDSQLGISRLKTVFEPTKI------ 184
Query: 240 GPKFQDPVQVACGAAHTVLVTDDG 263
K QV+ G +V +T DG
Sbjct: 185 --KLPSLQQVSAGNLFSVFLTQDG 206
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 28/149 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V++V+CGS H + S G ++WG N+ GQLG+ + R +
Sbjct: 93 VIQVSCGSTHTACVTSDGSL--------FTWGDNSCGQLGVKQNGNLNRVSTLTN----- 139
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+V+CG+ HT +LT + C+ FGL ++ QLG ++ P ++K LP
Sbjct: 140 ---CIQVSCGNKHTLVLTDAQE--------CFGFGLNDDSQLGISRLKTVFEPTKIK-LP 187
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGM 207
L V G + ++ G V+ G+
Sbjct: 188 S---LQQVSAGNLFSVFLTQDGIVYICGL 213
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 26/139 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN--CPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
++++ V G + + + G+L+ WG+ C G + VS+ T
Sbjct: 90 LNKVIQVSCGSTHTACVTSDGSLFTWGDNSCGQLGVKQNGNLNRVSTLT----------N 139
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
++V+CG++H + L A E C+ +G N++ QLG+ ++ P I+
Sbjct: 140 CIQVSCGNKHTLVLTDAQE--------CFGFGLNDDSQLGISRLKTVFEPTKIKL----- 186
Query: 119 PWAVYEVTCGSFHTALLTH 137
P ++ +V+ G+ + LT
Sbjct: 187 P-SLQQVSAGNLFSVFLTQ 204
>gi|422295033|gb|EKU22332.1| phosphatidylinositide phosphatase sac1 [Nannochloropsis gaditana
CCMP526]
Length = 1021
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 30/219 (13%)
Query: 86 CYSWGANNNGQLG---------------LGDRESRL-RPKIIETFNQDSPWAVYEVTCGS 129
++WG GQLG L RE RL + + + +PW ++ G
Sbjct: 637 VFAWGQGTEGQLGHSPIQKSALTGAYVELSPRELRLDTEQDQQKIEKHNPWGFVDLAAGL 696
Query: 130 FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCG 189
++A +T + +T+G G N +LGHG ++ P QV+ L Q V +V V CG
Sbjct: 697 NYSAGVTE--------DGKLYTWGDGSNHKLGHGDSKPVYRPRQVEAL-QDVKIVKVACG 747
Query: 190 LFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV 249
FHT+ + G +W+WG L +EA + P ++ +G + V
Sbjct: 748 DFHTAAIDEDGRLWTWGWGGSLFGGIGGLGHGDEA-EQPRPKVVRSLVDYGCRVGS---V 803
Query: 250 ACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
ACG HT+++TDDG ++ + G G G LG G + D P
Sbjct: 804 ACGEKHTLILTDDG-EVLTAGNGEYGRLGNGGSSDHGVP 841
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 127/318 (39%), Gaps = 61/318 (19%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ AG S + G L+ WG+ + G + P V +VKVA
Sbjct: 689 FVDLAAGLNYSAGVTEDGKLYTWGDG---SNHKLGHGDSKPVYRPRQVEALQDVKIVKVA 745
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWG-----ANNNGQLGLGDRESRLRPKIIETFNQDS 118
CG H A+ ED ++WG G LG GD + RPK++ + D
Sbjct: 746 CGDFHTAAI--------DEDGRLWTWGWGGSLFGGIGGLGHGDEAEQPRPKVVRSL-VDY 796
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V V CG HT +LT + T G GE G+LG+G + VPE V+
Sbjct: 797 GCRVGSVACGEKHTLILTD--------DGEVLTAGNGEYGRLGNGGSSDHGVPEPVELFD 848
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN-----------EAGDA 227
+ +V V G V++ G +++WG + L ++ + EA ++
Sbjct: 849 EKTNIVEVAAGHAFNLVLTQDGKIFTWGRNEQGQLGLGGGISMDVYSMEAVPLLVEALES 908
Query: 228 ISPILISGNGPH-------------GPKFQ-----------DPV-QVACGAAHTVLVTDD 262
+ ++ H G K D V QV CG +HT +VT+D
Sbjct: 909 KKVVHVAAGHSHSAAVTEEGELYMWGMKIHLEPQVFRVGEGDKVWQVGCGGSHTAVVTED 968
Query: 263 GYKLWSWGRGRSGVLGTG 280
++L+++G+G S LG G
Sbjct: 969 AHQLFTFGKGSSLCLGHG 986
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 76/199 (38%), Gaps = 32/199 (16%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL-VSSFTPSP--VWDFHGHT 58
+ I V AG +L + G ++ WG GG S+ V S P V
Sbjct: 851 TNIVEVAAGHAFNLVLTQDGKIFTWGRNEQGQLGLGGGISMDVYSMEAVPLLVEALESKK 910
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV VA G H A+ GE Y WG + L P++ D
Sbjct: 911 VVHVAAGHSHSAAVTEEGE--------LYMWGMKIH-----------LEPQVFRVGEGDK 951
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
W +V CG HTA++T +TFG G + LGHGT P+ V +
Sbjct: 952 VW---QVGCGGSHTAVVTEDAH-------QLFTFGKGSSLCLGHGTRSYTPHPKLVADGL 1001
Query: 179 QYVYLVSVDCGLFHTSVVS 197
+V V CG H +V++
Sbjct: 1002 AGRGVVKVACGHRHMAVIT 1020
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 110/306 (35%), Gaps = 71/306 (23%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSP-----VWDFHGH 57
+I V G + AID G LW WG G + P P + D+ G
Sbjct: 740 KIVKVACGDFHTAAIDEDGRLWTWGWGGSLFGGIGGLGHGDEAEQPRPKVVRSLVDY-GC 798
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V VACG +H + L GE + G G+LG G P+ +E F++
Sbjct: 799 RVGSVACGEKHTLILTDDGE--------VLTAGNGEYGRLGNGGSSDHGVPEPVELFDEK 850
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQ------LGHGTTQSALVP 171
+ + EV G +LT + +T+G E GQ + VP
Sbjct: 851 T--NIVEVAAGHAFNLVLTQ--------DGKIFTWGRNEQGQLGLGGGISMDVYSMEAVP 900
Query: 172 EQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI--- 228
V+ L + +V V G H++ V+ G+++ WGM+ L + R GD +
Sbjct: 901 LLVEAL-ESKKVVHVAAGHSHSAAVTEEGELYMWGMKIHL----EPQVFRVGEGDKVWQV 955
Query: 229 --------------SPILISGNGP-----HGPKFQDP--------------VQVACGAAH 255
+ G G HG + P V+VACG H
Sbjct: 956 GCGGSHTAVVTEDAHQLFTFGKGSSLCLGHGTRSYTPHPKLVADGLAGRGVVKVACGHRH 1015
Query: 256 TVLVTD 261
++TD
Sbjct: 1016 MAVITD 1021
>gi|405345706|ref|ZP_11022499.1| RCC1 repeat domain protein [Chondromyces apiculatus DSM 436]
gi|397093755|gb|EJJ24452.1| RCC1 repeat domain protein [Myxococcus sp. (contaminant ex DSM
436)]
Length = 747
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 121/294 (41%), Gaps = 49/294 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + S+ G SLA+ + G +W WG L D +T V P V
Sbjct: 497 LTGVTSIATGDYHSLALRSNGTVWGWGFNRYGQLGDGTT------VDRTQPVQVSGLT-- 548
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V +A G H +AL S D +++G N +GQLG G R + P
Sbjct: 549 NIVSIAAGGGHSLALRS--------DGTVWAFGYNFDGQLGNGTRTWTILPVQAVGLGN- 599
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + G ++ L + W +G +GQLG GTTQ + VP QV L
Sbjct: 600 ----VVSLAAGKMYSLAL--------RADGTVWAWGYNASGQLGVGTTQGSAVPLQVSGL 647
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ S+ G +H+ + S G VW+WG L + + ++P L+
Sbjct: 648 SA---ITSITAGTYHSLALRSDGWVWAWGFNF------EGQLGNGTSDNRLTPGLVV--- 695
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + G H++ V DG LW+WG G LGTG T++ + P V
Sbjct: 696 ----SMSNATAIFAGDLHSLAVRADG-TLWAWGLNSHGQLGTGDTVEAWFPVQV 744
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 129/318 (40%), Gaps = 70/318 (22%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---------------CPLPDSSTEGGFSLVSS 45
+++ +V AG SLA+ GA+W WG+ PL T GG +LV+
Sbjct: 298 LTETRTVVAGNYHSLAVRTDGAVWAWGDNRYRQLGTGNLTSSAVPLHAGMT-GGVTLVAG 356
Query: 46 FTPS-------PVWDFH-------GHTVVKVACGSEHVVALV------SAGETYK---GE 82
F S W + G T + V L ++G+ + G
Sbjct: 357 FRHSVALGADGTAWSWGDNVFGQLGDTTFQPRMAPVQVTGLALGRADATSGQLHTVMLGA 416
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPN 142
+ ++WG NN GQLG G +++ P + + V+ G HTA L
Sbjct: 417 NGRLWAWGDNNQGQLGNGTQQNSSLPLPVNLT------GITSVSSGHRHTAAL------- 463
Query: 143 DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV 202
L+ W++G + GQLG GT P QV P + S+ G +H+ + S G V
Sbjct: 464 -RLDGTVWSWGTNQYGQLGDGTRTDRSTPVQV---PGLTGVTSIATGDYHSLALRSNGTV 519
Query: 203 WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
W WG + L ++ R + P+ +SG + V +A G H++ + D
Sbjct: 520 WGWGFNRYGQLGDGTTVDRTQ------PVQVSG-------LTNIVSIAAGGGHSLALRSD 566
Query: 263 GYKLWSWGRGRSGVLGTG 280
G +W++G G LG G
Sbjct: 567 G-TVWAFGYNFDGQLGNG 583
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 117/296 (39%), Gaps = 51/296 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ I SV +G + A+ G +W WG G + TP V G V
Sbjct: 447 LTGITSVSSGHRHTAALRLDGTVWSWGTNQY---GQLGDGTRTDRSTPVQVPGLTG--VT 501
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +AL S G + WG N GQLG G R +P +
Sbjct: 502 SIATGDYHSLALRSNG--------TVWGWGFNRYGQLGDGTTVDRTQPVQVSGLTN---- 549
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ + G H+ L + W FG +GQLG+GT ++P Q L
Sbjct: 550 -IVSIAAGGGHSLALRS--------DGTVWAFGYNFDGQLGNGTRTWTILPVQAVGLGN- 599
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGN 236
+VS+ G ++ + + G VW+WG G+G +++ P+ +SG
Sbjct: 600 --VVSLAAGKMYSLALRADGTVWAWGYNASGQLGVGTTQGSAV----------PLQVSG- 646
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ G H++ + DG+ +W+WG G LG G + + P +V+
Sbjct: 647 ------LSAITSITAGTYHSLALRSDGW-VWAWGFNFEGQLGNGTSDNRLTPGLVV 695
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 114/284 (40%), Gaps = 44/284 (15%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
+G + ++ + G LW WG+ + G + +S P PV + G + V+
Sbjct: 402 ADATSGQLHTVMLGANGRLWAWGDN---NQGQLGNGTQQNSSLPLPV-NLTG--ITSVSS 455
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G H AL D +SWG N GQLG G R R P + V
Sbjct: 456 GHRHTAALR--------LDGTVWSWGTNQYGQLGDGTRTDRSTPVQVPGLT-----GVTS 502
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
+ G +H+ L R N W +G GQLG GTT P QV L +V
Sbjct: 503 IATGDYHSLAL----RSN----GTVWGWGFNRYGQLGDGTTVDRTQPVQVSGLTN---IV 551
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
S+ G H+ + S G VW++G G N + T I P+ G G
Sbjct: 552 SIAAGGGHSLALRSDGTVWAFGYNFD-GQLGNGTRTWT-----ILPVQAVGLG------- 598
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ V +A G +++ + DG +W+WG SG LG G T P
Sbjct: 599 NVVSLAAGKMYSLALRADG-TVWAWGYNASGQLGVGTTQGSAVP 641
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 97/232 (41%), Gaps = 38/232 (16%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V++A G H +A+ S G ++WG N GQLG G + + P +
Sbjct: 53 VRLAVGQYHSLAVHSEG--------TVFAWGFNRLGQLGDGTTQDKAAPVQVAGVA---- 100
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V G ++ L W +G +GQLG GT P +V L Q
Sbjct: 101 -SAVSVAAGDQYSLALDENGD--------VWAWGDNASGQLGDGTLTPRAQPRRVSGLTQ 151
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
V L S G H + + G VW+WG + L +A+LTR+ PI +
Sbjct: 152 GVSLAS---GFAHAVALRADGTVWAWGDNRSNQLG-SATLTRSPV-----PIPV------ 196
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P D V V G + ++ + DG +W+WG R G LG G T+ AP V
Sbjct: 197 -PGLSDIVAVVAGGSSSLALRADG-TVWAWGDNRYGQLGDGTTVRRAAPVRV 246
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 108/289 (37%), Gaps = 46/289 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV- 59
++ SV AG SLA+D G +W WG+ S G +L P V G T
Sbjct: 99 VASAVSVAAGDQYSLALDENGDVWAWGDNA---SGQLGDGTLTPRAQPRRV---SGLTQG 152
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +A G H VAL + D ++WG N + QLG P + +
Sbjct: 153 VSLASGFAHAVALRA--------DGTVWAWGDNRSNQLGSATLTRSPVPIPVPGLSD--- 201
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V V GS AL + W +G GQLG GTT P +V L
Sbjct: 202 -IVAVVAGGSSSLAL---------RADGTVWAWGDNRYGQLGDGTTVRRAAPVRVANLDA 251
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ + G +H + + G W+WG L ++ R P+LI
Sbjct: 252 VTH---ISAGAYHALALRADGTAWAWGYNAFGQLGDGTTVQRTL------PVLIG----- 297
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ V G H++ V DG +W+WG R LGTG P
Sbjct: 298 ---LTETRTVVAGNYHSLAVRTDG-AVWAWGDNRYRQLGTGNLTSSAVP 342
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 113/283 (39%), Gaps = 55/283 (19%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++Q S+ +G ++A+ G +W WG+ S+ G +L S P PV
Sbjct: 149 LTQGVSLASGFAHAVALRADGTVWAWGDN---RSNQLGSATLTRSPVPIPV--------- 196
Query: 61 KVACGSEHVVALVSAGETYKG--EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
G +VA+V+ G + D ++WG N GQLG G R P + N D
Sbjct: 197 ---PGLSDIVAVVAGGSSSLALRADGTVWAWGDNRYGQLGDGTTVRRAAP--VRVANLD- 250
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
AV ++ G++H L + W +G GQLG GTT + LP
Sbjct: 251 --AVTHISAGAYHALAL--------RADGTAWAWGYNAFGQLGDGTTVQ-------RTLP 293
Query: 179 QYVYLV---SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
+ L +V G +H+ V + G VW+WG + L T N A+
Sbjct: 294 VLIGLTETRTVVAGNYHSLAVRTDGAVWAWGDNRYRQLG-----TGNLTSSAV------- 341
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
P V + G H+V + DG WSWG G LG
Sbjct: 342 --PLHAGMTGGVTLVAGFRHSVALGADG-TAWSWGDNVFGQLG 381
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 115/283 (40%), Gaps = 50/283 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S I +V AGG SLA+ G +W WG+ L D +T V P V +
Sbjct: 199 LSDIVAVVAGGSSSLALRADGTVWAWGDNRYGQLGDGTT------VRRAAPVRVANL--D 250
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V ++ G+ H +AL + D ++WG N GQLG G R P +I
Sbjct: 251 AVTHISAGAYHALALRA--------DGTAWAWGYNAFGQLGDGTTVQRTLPVLIGLTETR 302
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ V G++H+ L R + W +G QLG G S+ VP +
Sbjct: 303 T------VVAGNYHS--LAVRT------DGAVWAWGDNRYRQLGTGNLTSSAVPLHAG-M 347
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
V LV G H+ + + G WSWG + G + + ++P+ ++G
Sbjct: 348 TGGVTLV---AGFRHSVALGADGTAWSWG-DNVFGQLGDTTFQPR-----MAPVQVTG-- 396
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
G HTV++ +G +LW+WG G LG G
Sbjct: 397 ----LALGRADATSGQLHTVMLGANG-RLWAWGDNNQGQLGNG 434
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 32/180 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ + S+ AG M SLA+ G +W WG + L +T+G S P V
Sbjct: 597 LGNVVSLAAGKMYSLALRADGTVWAWGYNASGQLGVGTTQG------SAVPLQVSGLS-- 648
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+ + G+ H +AL S G ++WG N GQLG G ++RL P ++ + +
Sbjct: 649 AITSITAGTYHSLALRSDGW--------VWAWGFNFEGQLGNGTSDNRLTPGLVVSMSNA 700
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ + G H+ L R + W +GL +GQLG G T A P QV+ L
Sbjct: 701 T-----AIFAGDLHS--LAVRA------DGTLWAWGLNSHGQLGTGDTVEAWFPVQVQGL 747
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 111/281 (39%), Gaps = 49/281 (17%)
Query: 14 SLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVV 70
SLA+ + G ++ WG L D +T+ +PV + V VA G ++ +
Sbjct: 62 SLAVHSEGTVFAWGFNRLGQLGDGTTQD--------KAAPVQVAGVASAVSVAAGDQYSL 113
Query: 71 ALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF 130
AL G+ ++WG N +GQLG G R +P+ + Q + G
Sbjct: 114 ALDENGD--------VWAWGDNASGQLGDGTLTPRAQPRRVSGLTQG-----VSLASGFA 160
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
H L + W +G + QLG T + VP V L +V+V G
Sbjct: 161 HAVAL--------RADGTVWAWGDNRSNQLGSATLTRSPVPIPVPGLSD---IVAVVAGG 209
Query: 191 FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
+ + + G VW+WG + G + + R A P+ ++ ++
Sbjct: 210 SSSLALRADGTVWAWGDNR-YGQLGDGTTVRRAA-----PVRVA-------NLDAVTHIS 256
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
GA H + + DG W+WG G LG G T+ P ++
Sbjct: 257 AGAYHALALRADGTA-WAWGYNAFGQLGDGTTVQRTLPVLI 296
>gi|449270678|gb|EMC81335.1| putative E3 ubiquitin-protein ligase HERC5, partial [Columba livia]
Length = 314
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 95/197 (48%), Gaps = 27/197 (13%)
Query: 16 AIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSP--VWDFHGHTVVKVACGSEHVVALV 73
++ G L+ WG ++ + G S ++ P P V G + ++A G H VA+
Sbjct: 1 SVCEGGELFTWGQ----NAHGQLGVSSQNALIPKPQLVERLKGIPLAQIAAGGAHNVAVS 56
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+G Y SWG N+ GQLGLG R P I+ W V+CG+ HTA
Sbjct: 57 LSGAVY--------SWGKNDFGQLGLGHTRDRGCPSYIKALEH---WKTVFVSCGADHTA 105
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
+L+ E + TFG G +GQLGH +T++ LVP V EL + + CG HT
Sbjct: 106 VLSK--------EGLVCTFGAGGSGQLGHNSTRNELVPRLVAEL-WGARVSQIACGRQHT 156
Query: 194 SV-VSSAGDVWSWGMEK 209
V V S V+S+G ++
Sbjct: 157 LVYVPSLDTVFSFGSDE 173
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 24/217 (11%)
Query: 87 YSWGANNNGQLGLGDRESRL-RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
++WG N +GQLG+ + + + +P+++E + P A ++ G H ++ L
Sbjct: 9 FTWGQNAHGQLGVSSQNALIPKPQLVERL-KGIPLA--QIAAGGAHNVAVS--------L 57
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSW 205
+++G + GQLG G T+ P +K L + V V CG HT+V+S G V ++
Sbjct: 58 SGAVYSWGKNDFGQLGLGHTRDRGCPSYIKALEHW-KTVFVSCGADHTAVLSKEGLVCTF 116
Query: 206 GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
G L N+ TRNE + P L++ G + Q+ACG HT++
Sbjct: 117 GAGGSGQLGHNS--TRNE----LVPRLVAE--LWGARVS---QIACGRQHTLVYVPSLDT 165
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQ 302
++S+G G LG + + P + P T + Q
Sbjct: 166 VFSFGSDEEGQLGDKRKPNQLIPLPIDSPVNTGKSHQ 202
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 25/170 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ + AGG ++A+ +GA++ WG D G PS + V V+
Sbjct: 42 LAQIAAGGAHNVAVSLSGAVYSWGK---NDFGQLGLGHTRDRGCPSYIKALEHWKTVFVS 98
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA-- 121
CG++H L G LVC ++GA +GQLG + L P+++ W
Sbjct: 99 CGADHTAVLSKEG-------LVC-TFGAGGSGQLGHNSTRNELVPRLVAEL-----WGAR 145
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
V ++ CG HT + L+++ ++FG E GQLG + L+P
Sbjct: 146 VSQIACGRQHTLVYV------PSLDTV-FSFGSDEEGQLGDKRKPNQLIP 188
>gi|327273159|ref|XP_003221348.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like [Anolis
carolinensis]
Length = 1109
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 137/297 (46%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHT 58
I V G SLA+ + G L+ WG + ++G L ++ P + +
Sbjct: 144 HIIHVACGESHSLALSDQGRLFSWG------AGSDGQLGLTTTEDSVAVPRLIKKLNQEM 197
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N++GQLGLG S+ P+ +++ +
Sbjct: 198 ILQVSCGNWHCLALAADGQFF--------AWGQNSHGQLGLGKEFPSQASPQRVKSLD-G 248
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G +GQLG Q P VK L
Sbjct: 249 IPLA--QVAAGGAHSFALS--------LSGAVFGWGKNTSGQLGLSDEQDRESPCHVKLL 298
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ G V+++G G C L + D ++P + +
Sbjct: 299 -RTQKVVYISCGSDHTAVLTKTGGVFTFGA----GSC--GQLGHDSFNDEVNPRRVLELM 351
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LG+G T + P+ V
Sbjct: 352 GS--------EVSQIACGRQHTLAFVPSSGLIYAFGCGIKGQLGSGHTCNLKCPSPV 400
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 112/244 (45%), Gaps = 46/244 (18%)
Query: 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
H +V +VACG H + L+ GE Y + G N GQLG ++E +I
Sbjct: 91 HERSVKEVACGGNHSIFLLEDGEVY--------TCGVNTKGQLG-HEKEGSKPEQIGALA 141
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQ 173
+Q + V CG H+ L+ + R +++G G +GQLG TT+ S VP
Sbjct: 142 DQH----IIHVACGESHSLALSDQGR--------LFSWGAGSDGQLGLTTTEDSVAVPRL 189
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLG--LCPNASLTRNEAGDA 227
+K+L Q + ++ V CG +H +++ G ++WG + GLG AS R ++ D
Sbjct: 190 IKKLNQEM-ILQVSCGNWHCLALAADGQFFAWGQNSHGQLGLGKEFPSQASPQRVKSLDG 248
Query: 228 ISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
I P+ QVA G AH+ ++ G ++ WG+ SG LG D +
Sbjct: 249 I-PL---------------AQVAAGGAHSFALSLSG-AVFGWGKNTSGQLGLSDEQDRES 291
Query: 288 PAIV 291
P V
Sbjct: 292 PCHV 295
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 25/174 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF-TPSPVWDFHGHTVVKV 62
+ V AGG S A+ +GA++ WG ++S + G S +P V VV +
Sbjct: 251 LAQVAAGGAHSFALSLSGAVFGWGK----NTSGQLGLSDEQDRESPCHVKLLRTQKVVYI 306
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWA 121
+CGS+H L G + ++GA + GQLG + P+ ++E +
Sbjct: 307 SCGSDHTAVLTKTGGVF--------TFGAGSCGQLGHDSFNDEVNPRRVLELMGSE---- 354
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V ++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 355 VSQIACGRQHTLAFV----PSS---GLIYAFGCGIKGQLGSGHTCNLKCPSPVK 401
>gi|350418736|ref|XP_003491950.1| PREDICTED: hypothetical protein LOC100748540 [Bombus impatiens]
Length = 791
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 41/238 (17%)
Query: 47 TPSPVWD--FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES 104
TP V+D G +V++A GS H +AL S G ++WG+N GQLGL D
Sbjct: 133 TPVLVYDSGLSGSKIVQIAAGSHHSLALTSDG--------GVFAWGSNLEGQLGLPDVSG 184
Query: 105 RL-RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
+ +P + P V +++ G +H+ LT + + G E+G+LG
Sbjct: 185 LVNKPTKVHI-----PEPVKQISAGYYHSTFLTES--------GLVYVCGESESGKLGID 231
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTR 221
+ S V + +LP V V CG HT +++ G+++ G LGL
Sbjct: 232 ASFSTQVAPKQMQLPSPA--VHVACGGHHTVILAENGNLYCTGSNSSGQLGL-------- 281
Query: 222 NEAGDAISPILISGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
G +S + I P G + + +++CG +HT +VT+ G KL++ G GR G LG
Sbjct: 282 ---GTNLSELHIPKLLPRGMLRNETITRISCGESHTAVVTESG-KLYTCGDGRHGKLG 335
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 101/248 (40%), Gaps = 51/248 (20%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+ + CG EH + G + +G+N+ GQLGLG + +P ++
Sbjct: 38 VLSITCGDEHSAVICQTGR--------LFVFGSNDWGQLGLGHKNHISKPSCVKAL---K 86
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P V V CG HT + T ++ + G + GQLG G + + + V P
Sbjct: 87 PERVTHVACGRAHTLICTGSQK--------IFACGSDQEGQLGRGI---SAIGDSVN-TP 134
Query: 179 QYVY--------LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAI 228
VY +V + G H+ ++S G V++WG +E LGL + L
Sbjct: 135 VLVYDSGLSGSKIVQIAAGSHHSLALTSDGGVFAWGSNLEGQLGLPDVSGLV-------- 186
Query: 229 SPILISGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF-F 286
N P +PV Q++ G H+ +T+ G ++ G SG LG +
Sbjct: 187 -------NKPTKVHIPEPVKQISAGYYHSTFLTESGL-VYVCGESESGKLGIDASFSTQV 238
Query: 287 APAIVLWP 294
AP + P
Sbjct: 239 APKQMQLP 246
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 111/274 (40%), Gaps = 64/274 (23%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL--VSSFTPSPVWDFHGHTV 59
S+I + AG SLA+ + G ++ WG S+ EG L VS P V
Sbjct: 145 SKIVQIAAGSHHSLALTSDGGVFAWG------SNLEGQLGLPDVSGLVNKPTKVHIPEPV 198
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL-GDRESRLRPKIIETFNQDS 118
+++ G H L +G Y VC G + +G+LG+ +++ PK ++
Sbjct: 199 KQISAGYYHSTFLTESGLVY-----VC---GESESGKLGIDASFSTQVAPKQMQL----- 245
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL-VPEQVKEL 177
P V CG HT +L + G +GQLG GT S L +P K L
Sbjct: 246 PSPAVHVACGGHHTVILAEN--------GNLYCTGSNSSGQLGLGTNLSELHIP---KLL 294
Query: 178 PQYVY----LVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPI 231
P+ + + + CG HT+VV+ +G +++ G + LGL N
Sbjct: 295 PRGMLRNETITRISCGESHTAVVTESGKLYTCGDGRHGKLGLEENE-------------- 340
Query: 232 LISGNGPHGPKFQDPVQ------VACGAAHTVLV 259
N H F + VACG HT+LV
Sbjct: 341 ----NNVHELTFVQRYKELFVSDVACGGCHTILV 370
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT----PS--PVWDFHGHTVV 60
V GG ++ + G L+ G S++ G L ++ + P P T+
Sbjct: 252 VACGGHHTVILAENGNLYCTG------SNSSGQLGLGTNLSELHIPKLLPRGMLRNETIT 305
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP-KIIETFNQDSP 119
+++CG H + +G+ Y+ G +G+LGL + E+ + ++ + +
Sbjct: 306 RISCGESHTAVVTESGK--------LYTCGDGRHGKLGLEENENNVHELTFVQRYKE--- 354
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
V +V CG HT L+ R+ N+ + +N Q H +++L P
Sbjct: 355 LFVSDVACGGCHTILVGQRRDTNNRSQKE-------DNSQTEHIQKRNSLPP 399
>gi|115767093|ref|XP_787316.2| PREDICTED: RCC1 domain-containing protein 1-like
[Strongylocentrotus purpuratus]
Length = 371
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 33/195 (16%)
Query: 110 IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
I F+Q P V E+ CG H LLT + + +++G+G GQLGHG
Sbjct: 162 IFSPFSQ--PIGVQEIACGKEHALLLT--------AQGLVYSYGMGSRGQLGHGDIGKED 211
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD--VWSWGMEKGLGLCPNASLTRNEAG-- 225
VP+ + + V +V++ G +H++ +S+ GD +W W LGL P+ +R E G
Sbjct: 212 VPKLLDAI-ACVPMVTISAGGWHSACISAIGDMYIWGWNESGQLGLPPDLESSRTEEGSS 270
Query: 226 ----DAISPILISG--NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
D IS ++ + P G +V+CG+ HT V+ D +L++WG G+ G LG
Sbjct: 271 HVMADRISFQMVPAVLDLPGGVNVS---KVSCGSRHTAAVSYD-KRLYTWGWGKYGQLGH 326
Query: 280 G--------KTIDFF 286
G K +DFF
Sbjct: 327 GDVQSRDSPKLVDFF 341
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 72/146 (49%), Gaps = 24/146 (16%)
Query: 6 SVKAGGMMSLAIDNAGALWMWG-------NCP--LPDSSTEGGFSLVS----SFTPSP-V 51
++ AGG S I G +++WG P L S TE G S V SF P V
Sbjct: 226 TISAGGWHSACISAIGDMYIWGWNESGQLGLPPDLESSRTEEGSSHVMADRISFQMVPAV 285
Query: 52 WDFHGH-TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKI 110
D G V KV+CGS H A+ +Y D Y+WG GQLG GD +SR PK+
Sbjct: 286 LDLPGGVNVSKVSCGSRHTAAV-----SY---DKRLYTWGWGKYGQLGHGDVQSRDSPKL 337
Query: 111 IETFNQDSPWAVYEVTCGSFHTALLT 136
++ F Q+ V +VTCG + +A+ T
Sbjct: 338 VDFFLQNR-LDVLDVTCGDWSSAVYT 362
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 38/166 (22%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V ++ACG EH + L + G + YS+G + GQLG GD PK+++ +
Sbjct: 172 VQEIACGKEHALLLTAQG--------LVYSYGMGSRGQLGHGDIGKEDVPKLLDAI---A 220
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-----------HGTTQS 167
+ ++ G +H+A ++ DM + +G E+GQLG G++
Sbjct: 221 CVPMVTISAGGWHSACIS---AIGDM-----YIWGWNESGQLGLPPDLESSRTEEGSSHV 272
Query: 168 -------ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+VP V +LP V + V CG HT+ VS +++WG
Sbjct: 273 MADRISFQMVP-AVLDLPGGVNVSKVSCGSRHTAAVSYDKRLYTWG 317
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 42/160 (26%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL-----------------GD 101
+V ++ G H + + G+ Y WG N +GQLGL D
Sbjct: 224 MVTISAGGWHSACISAIGDMYI--------WGWNESGQLGLPPDLESSRTEEGSSHVMAD 275
Query: 102 RES-RLRPKIIETFNQDSPWAV--YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENG 158
R S ++ P ++ D P V +V+CGS HTA +++ KR +T+G G+ G
Sbjct: 276 RISFQMVPAVL-----DLPGGVNVSKVSCGSRHTAAVSYDKR--------LYTWGWGKYG 322
Query: 159 QLGHGTTQSALVPEQVKELPQ-YVYLVSVDCGLFHTSVVS 197
QLGHG QS P+ V Q + ++ V CG + ++V +
Sbjct: 323 QLGHGDVQSRDSPKLVDFFLQNRLDVLDVTCGDWSSAVYT 362
>gi|291401444|ref|XP_002717009.1| PREDICTED: hect domain and RLD 3-like [Oryctolagus cuniculus]
Length = 974
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 83/176 (47%), Gaps = 25/176 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSP--VWDFHGHTVVK 61
I + G SLA+ G L+ WG +S + G ++ P+P V G +V+
Sbjct: 130 IIQITCGDYHSLALSKGGELFAWGQ----NSHGQLGIGVMCPSVPTPQIVEHLAGVPLVQ 185
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
++ G H + L +G Y SWG N+ GQLGLG E++ P +IE +
Sbjct: 186 ISAGEAHSMTLSMSGNVY--------SWGKNDLGQLGLGHTENKDSPCLIEALDNQK--- 234
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V V CG HTALLT + +TFG G+ GQLGH + ++ L P V L
Sbjct: 235 VEFVACGGSHTALLTQ--------DGQLFTFGAGKYGQLGHKSKRNELKPRLVTVL 282
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 104/230 (45%), Gaps = 43/230 (18%)
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+A G+EHV+ L S G+ ++ Y++ + +S L+ K I
Sbjct: 93 MAQGAEHVLVLSSDGKPFE------YNYSIEH------AKFQSILQEKTI---------- 130
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
++TCG +H+ L+ E W G +GQLG G ++ Q+ E V
Sbjct: 131 -IQITCGDYHSLALSKGG------ELFAW--GQNSHGQLGIGVMCPSVPTPQIVEHLAGV 181
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
LV + G H+ +S +G+V+SWG + LG L E D SP LI
Sbjct: 182 PLVQISAGEAHSMTLSMSGNVYSWG-KNDLG---QLGLGHTENKD--SPCLIEALDNQKV 235
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+F VACG +HT L+T DG +L+++G G+ G LG + P +V
Sbjct: 236 EF-----VACGGSHTALLTQDG-QLFTFGAGKYGQLGHKSKRNELKPRLV 279
>gi|414878660|tpg|DAA55791.1| TPA: putative regulator of chromosome condensation (RCC1) family
protein [Zea mays]
Length = 964
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 137/297 (46%), Gaps = 44/297 (14%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF----SLVSSFTPSPV-WDFHGHTVVK 61
V G + A+ +G L+ WG D + + G + VS + P V G V
Sbjct: 240 VACGEYHTCAVTLSGDLYTWG-----DGTFKFGLLGHGNDVSHWVPKHVNGPLEGIHVSS 294
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
++CG H + SAG+ + ++G + G LG GDRES P+ +E+
Sbjct: 295 ISCGPWHTALVTSAGQLF--------TFGDGSFGVLGHGDRESISVPREVESLKG---LR 343
Query: 122 VYEVTCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
CG +HTA +++ ++ +T+G G+ G+LGHG + LVP V L
Sbjct: 344 TVRAACGVWHTAAVVEVMSVNSNSSNCSSGKIFTWGDGDKGRLGHGDKEPKLVPTCVAAL 403
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISG 235
+ + V CG T ++++G V++ G + LG N D + P+ + G
Sbjct: 404 VEPNF-CQVACGHCLTVALTTSGHVYTMGSAVYGQLG---------NAQADGMLPVRVEG 453
Query: 236 NGPHGPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+++ V+ ++CGA H ++T ++++WG+G +G LG G T D P +V
Sbjct: 454 K-----LYKNFVEEISCGAYHVAVLTSR-TEVYTWGKGANGRLGHGDTEDKNTPTLV 504
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 31/180 (17%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80
G ++ WG+ D G P+ V +VACG VAL ++G Y
Sbjct: 373 GKIFTWGD---GDKGRLGHGDKEPKLVPTCVAALVEPNFCQVACGHCLTVALTTSGHVY- 428
Query: 81 GEDLVCYSWGANNNGQLGLGDRES----RLRPKIIETFNQDSPWAVYEVTCGSFHTALLT 136
+ G+ GQLG + R+ K+ + F V E++CG++H A+LT
Sbjct: 429 -------TMGSAVYGQLGNAQADGMLPVRVEGKLYKNF-------VEEISCGAYHVAVLT 474
Query: 137 HRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
R + +T+G G NG+LGHG T+ P V+ L + +V CG+ T+ +
Sbjct: 475 SR--------TEVYTWGKGANGRLGHGDTEDKNTPTLVEALKDK-QVRNVVCGINFTAAI 525
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 32/209 (15%)
Query: 96 QLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG 155
+ G R + L K + + S + V CG +HT +T L +T+G G
Sbjct: 211 NISCGGRHAALVTKQAKLIDALSHMNIELVACGEYHTCAVT--------LSGDLYTWGDG 262
Query: 156 --ENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGL 213
+ G LGHG S VP+ V + +++ S+ CG +HT++V+SAG ++++G + G+
Sbjct: 263 TFKFGLLGHGNDVSHWVPKHVNGPLEGIHVSSISCGPWHTALVTSAGQLFTFG-DGSFGV 321
Query: 214 CPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD-----------D 262
+ + + K V+ ACG HT V +
Sbjct: 322 LGHGDRESISVPREVESL----------KGLRTVRAACGVWHTAAVVEVMSVNSNSSNCS 371
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
K+++WG G G LG G P V
Sbjct: 372 SGKIFTWGDGDKGRLGHGDKEPKLVPTCV 400
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 20/150 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW---DFHGHTV 59
C V G +++A+ +G ++ G S+ G + PV + + V
Sbjct: 407 NFCQVACGHCLTVALTTSGHVYTMG------SAVYGQLGNAQADGMLPVRVEGKLYKNFV 460
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+++CG+ HV L S E Y +WG NG+LG GD E + P ++E
Sbjct: 461 EEISCGAYHVAVLTSRTEVY--------TWGKGANGRLGHGDTEDKNTPTLVEALKDKQ- 511
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
V V CG TA + K + + +SMC
Sbjct: 512 --VRNVVCGINFTAAICIHKWVSGVDQSMC 539
>gi|224138854|ref|XP_002322918.1| predicted protein [Populus trichocarpa]
gi|222867548|gb|EEF04679.1| predicted protein [Populus trichocarpa]
Length = 467
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 122/289 (42%), Gaps = 57/289 (19%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN--------------------CPLPDSSTEGGF-- 40
+I SV AGG +LA+ + G +W WG P + T G
Sbjct: 209 RITSVAAGGRHTLALSDTGQVWGWGYGGEGQLGLGSRVKMVSSPHLIPFTEQPTTGKHRS 268
Query: 41 SLV---SSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQL 97
S+V S+ P+ V +F G V ++ACG H + AG L+ + WG GQ
Sbjct: 269 SVVHNGSTNLPAQVSNFPGSYVKEIACGGRHSAVVTDAGT------LLTFGWGL--YGQC 320
Query: 98 GLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN 157
G G +LRP + + S + + G +HT +T ++ + FG +
Sbjct: 321 GHGSTNDQLRPTSLPSL---SGIQIERIAAGLWHTMCIT--------IDGRVYVFGGNQF 369
Query: 158 GQLGHGTTQSALVPEQVKELPQYVYLVS-VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPN 216
GQLG G +Q +P +++ LV V CG H++++ G V+SWG K L
Sbjct: 370 GQLGTGASQGETLPRLLEDPCLESKLVKMVSCGARHSAILLEDGQVFSWGWNKYGQLGVG 429
Query: 217 ASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
S+ RN +P + G P VACG HT+L+ + K
Sbjct: 430 DSIDRN------TPTQVPIEGCR------PKMVACGWWHTLLLAETPLK 466
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 111/276 (40%), Gaps = 60/276 (21%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-- 102
+ TP+ V G + VA G H +AL G+ + WG GQLGLG R
Sbjct: 196 TVTPAIVSLGPGVRITSVAAGGRHTLALSDTGQVW--------GWGYGGEGQLGLGSRVK 247
Query: 103 ---------------ESRLRPKIIETFNQDSPWAV--------YEVTCGSFHTALLTHRK 139
+ R ++ + + P V E+ CG H+A++T
Sbjct: 248 MVSSPHLIPFTEQPTTGKHRSSVVHNGSTNLPAQVSNFPGSYVKEIACGGRHSAVVTD-- 305
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
TFG G GQ GHG+T L P + L + + + GL+HT ++
Sbjct: 306 ------AGTLLTFGWGLYGQCGHGSTNDQLRPTSLPSL-SGIQIERIAAGLWHTMCITID 358
Query: 200 GDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
G V+ +G + G G +L R + L+ V+CGA H
Sbjct: 359 GRVYVFGGNQFGQLGTGASQGETLPRLLEDPCLESKLVK-------------MVSCGARH 405
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ ++ +DG +++SWG + G LG G +ID P V
Sbjct: 406 SAILLEDG-QVFSWGWNKYGQLGVGDSIDRNTPTQV 440
>gi|67617767|ref|XP_667559.1| hect domain and RLD 2 [Cryptosporidium hominis TU502]
gi|54658712|gb|EAL37335.1| hect domain and RLD 2 [Cryptosporidium hominis]
Length = 1878
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 103/241 (42%), Gaps = 38/241 (15%)
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETF 114
GH+ + A H + A KG+ Y+WG N N LGLG P + F
Sbjct: 36 GHSFTRAASSLNHY--FIVAKLKNKGQ---LYAWGVNTNNVLGLGIENGEFNFPMKVNFF 90
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
S V++V+CG HTA+L + +T GLG+ G+LG+ + E
Sbjct: 91 ---SALEVFQVSCGYSHTAVLV---KGISEASGRVYTMGLGDRGRLGYTRGHTEFGNEHD 144
Query: 175 K---------------ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
K P + + CG H+ +S +G V++WG+ + L
Sbjct: 145 KNDLNESWYTPIPCIVNFPFNAKISRISCGANHSLALSDSGLVFAWGIGQ------YGCL 198
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
E D SP+ I GP + + +A GA H++ +DG ++++WG +G LGT
Sbjct: 199 GTGELNDVYSPVKIEA----GPTDKKVLHIAAGARHSLCCNEDG-QVFAWGSNSNGRLGT 253
Query: 280 G 280
G
Sbjct: 254 G 254
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 131/309 (42%), Gaps = 67/309 (21%)
Query: 10 GGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHV 69
G +S + G L+ + S+E G SLV S PS W +V ++ACG+ H
Sbjct: 449 GNKVSYEPKSEGGLFSVNRIYKSNGSSEIG-SLVGSQIPS--W-----SVRQIACGTSHT 500
Query: 70 VALVSAGETYKGEDLVCYSWGANNNGQLGLGDR----------ESRLRPKIIETFNQDSP 119
+ LV G ++WG N GQLG+ R ES L F++
Sbjct: 501 LLLVYGG--------TIFAWGDNKYGQLGIDTRRRKSQDGDKNESFLNEPTEIKFSE--- 549
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V CGS+H+ ++ C+++G G+ GQLG G ++ P + L
Sbjct: 550 -PIRRVACGSWHSLCCD--------IKGNCFSWGRGDRGQLGTGAIRNLYEPAGIVTLKN 600
Query: 180 YVYLVSVDCG-LFHTSVVS------------SAGDVWSWGMEKGLGLCPNASLTRNEAGD 226
++ V G L+ +V+ ++GD+W WG + L + GD
Sbjct: 601 ---VIEVAGGELYSACIVACITTGNKDLDTINSGDLWIWG---------DGDLGKLGLGD 648
Query: 227 AISPILISGNGPHGPKFQDP-VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ I+ P P ++VA G++HT+ +T G +L +WG G G LGT T
Sbjct: 649 HVLKSCIA--APRHLNLGTPIIKVALGSSHTLALTASG-ELITWGAGYYGRLGTNSTKSH 705
Query: 286 FAPAIVLWP 294
P + +P
Sbjct: 706 SNPIKIRFP 714
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 24/210 (11%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I V G SL D G + WG D G ++ + + P+ + V++VA
Sbjct: 551 IRRVACGSWHSLCCDIKGNCFSWGR---GDRGQLGTGAIRNLYEPAGIVTLKN--VIEVA 605
Query: 64 CG---SEHVVALVSAG----ETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
G S +VA ++ G +T DL + WG + G+LGLGD + N
Sbjct: 606 GGELYSACIVACITTGNKDLDTINSGDL--WIWGDGDLGKLGLGDHVLKSCIAAPRHLNL 663
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+P + +V GS HT LT E + W G G G+LG +T+S P +++
Sbjct: 664 GTP--IIKVALGSSHTLALTASG------ELITW--GAGYYGRLGTNSTKSHSNPIKIRF 713
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ V +V + G +H+ VSS GD+W WG
Sbjct: 714 PIKGVQIVDIAVGSYHSMAVSSLGDLWVWG 743
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 101/214 (47%), Gaps = 33/214 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT--- 58
++I + G SLA+ ++G ++ WG + G L ++P + G T
Sbjct: 166 AKISRISCGANHSLALSDSGLVFAWG---IGQYGCLGTGELNDVYSPVKIE--AGPTDKK 220
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES-RLRPKIIETFNQD 117
V+ +A G+ H + ED ++WG+N+NG+LG G + P I++ +Q
Sbjct: 221 VLHIAAGARHSLCC--------NEDGQVFAWGSNSNGRLGTGGSYGMKTVPTQIKSLSQ- 271
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESM--CWTFGLGENGQLGHGTTQSALVPEQVK 175
+H L+ + + ++S +T+G G +G+LGHGT +P +++
Sbjct: 272 ------------YHITLVAAGESHSGCIDSFGYIYTWGNGGSGKLGHGTQSDCNIPRRIE 319
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+ + V + G F++ +S +G+V+ WG ++
Sbjct: 320 GISSLPF-VQLTLGAFNSMALSQSGEVYIWGAKQ 352
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 19/154 (12%)
Query: 150 WTFGLGENGQLGHGTTQSAL-VPEQVKELPQYVYLVSVDCGLFHTSVV-----SSAGDVW 203
+ +G+ N LG G P +V + + V CG HT+V+ ++G V+
Sbjct: 62 YAWGVNTNNVLGLGIENGEFNFPMKVNFFSA-LEVFQVSCGYSHTAVLVKGISEASGRVY 120
Query: 204 SWGM-EKG-LGLCPNASLTRNEAGDA------ISPILISGNGPHGPKFQDPVQVACGAAH 255
+ G+ ++G LG + NE +PI N P K +++CGA H
Sbjct: 121 TMGLGDRGRLGYTRGHTEFGNEHDKNDLNESWYTPIPCIVNFPFNAKIS---RISCGANH 177
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA 289
++ ++D G +++WG G+ G LGTG+ D ++P
Sbjct: 178 SLALSDSGL-VFAWGIGQYGCLGTGELNDVYSPV 210
>gi|198462494|ref|XP_002135307.1| GA28417 [Drosophila pseudoobscura pseudoobscura]
gi|198150848|gb|EDY73934.1| GA28417 [Drosophila pseudoobscura pseudoobscura]
Length = 1052
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 130/301 (43%), Gaps = 50/301 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN--CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+ + G S+A+ G + WG+ C ST+ + P + TVV+
Sbjct: 88 VIQIACGSRHSMALTEWGQILSWGDNDCGQVGHSTDNDVIEL----PKILRFLVSRTVVQ 143
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG------LGDRESRLRPKIIETFN 115
+ACG+ H +AL S GE YSWG+N GQLG L + LR I
Sbjct: 144 IACGNNHSLALTSCGE--------LYSWGSNIYGQLGVQSPKDLPHSNAPLRLTTILGI- 194
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQ 173
P A + CG H+ L++ FG G+N GQLG Q+ P Q
Sbjct: 195 ---PLAT--IACGGNHSFLISKSSA----------VFGWGKNTCGQLGLNDEQNRAYPSQ 239
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
+K + + + + V CG ++ +++ G V++ G L AS + I ++I
Sbjct: 240 LKSM-RTLGVRFVTCGDEYSVFLTNEGGVFTCGAGNYGQLGHGAS-----NNEMIPRMVI 293
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
G QVACG HT+ + G +++S+G G SG LGT TI P +V+
Sbjct: 294 ELMG------STITQVACGNRHTLALVPSGGRVYSFGLGASGQLGTRNTISQTLPKVVIG 347
Query: 294 P 294
P
Sbjct: 348 P 348
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 93/204 (45%), Gaps = 27/204 (13%)
Query: 84 LVCYSWGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
+ Y WG ++GQLGLG + E L P IE F DSP V ++ CG HT LT +
Sbjct: 1 MALYCWGDASHGQLGLGGIENEQILLPSQIE-FKPDSP--VQQIACGHRHTLFLTANGQ- 56
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ G ++ QLGH +P + EL YV ++ + CG H+ ++ G
Sbjct: 57 -------VYACGNNDHHQLGHELPTKRPLP--IPELQAYV-VIQIACGSRHSMALTEWGQ 106
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+ SWG + G +++ I L+S + VQ+ACG H++ +T
Sbjct: 107 ILSWG-DNDCGQVGHSTDNDVIELPKILRFLVS---------RTVVQIACGNNHSLALTS 156
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDF 285
G +L+SWG G LG D
Sbjct: 157 CG-ELYSWGSNIYGQLGVQSPKDL 179
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 103/259 (39%), Gaps = 35/259 (13%)
Query: 22 ALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKG 81
AL+ WG+ GG PS + V ++ACG H + L + G+ Y
Sbjct: 2 ALYCWGDASHGQLGL-GGIENEQILLPSQIEFKPDSPVQQIACGHRHTLFLTANGQVY-- 58
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
NN LG RP I + V ++ CGS H+ LT
Sbjct: 59 --------ACGNNDHHQLGHELPTKRPLPIPEL---QAYVVIQIACGSRHSMALT----- 102
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + + W G + GQ+GH T + ++ +V + CG H+ ++S G+
Sbjct: 103 -EWGQILSW--GDNDCGQVGHSTDNDVIELPKILRFLVSRTVVQIACGNNHSLALTSCGE 159
Query: 202 VWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLV 259
++SWG + LG+ L + A ++ IL G +ACG H+ L+
Sbjct: 160 LYSWGSNIYGQLGVQSPKDLPHSNAPLRLTTIL-------GIPL---ATIACGGNHSFLI 209
Query: 260 TDDGYKLWSWGRGRSGVLG 278
+ ++ WG+ G LG
Sbjct: 210 SKSS-AVFGWGKNTCGQLG 227
>gi|260798953|ref|XP_002594464.1| hypothetical protein BRAFLDRAFT_72132 [Branchiostoma floridae]
gi|229279698|gb|EEN50475.1| hypothetical protein BRAFLDRAFT_72132 [Branchiostoma floridae]
Length = 1711
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 129/309 (41%), Gaps = 65/309 (21%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL---VSSFTPSPVWDFHGHTV 59
Q+ +V G +LA+ + G ++ WG SST G L P+ V
Sbjct: 922 QVMAVACGQEHTLALCDNG-VYAWG------SSTYGQLGLGDWDRQTHPTLVTQLKDVFC 974
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V VA G H AL G + WG +GQLG G+ E+ +P ++
Sbjct: 975 VAVATGQYHSAALDGEGRVWM--------WGWGVHGQLGQGNAENLNKPHLVAAVQN--- 1023
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+V+ G HTA+LT R ++ +TFG G +GQLGHG T +P++V+ +
Sbjct: 1024 --AVQVSTGYAHTAVLT---RSGEV-----FTFGCGLHGQLGHGATDKVSIPQRVQGIMG 1073
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL---GLCPNASLTRNEAGDAISPILISGN 236
V V CGLFHT VV+S+ V+++G + L + R SP
Sbjct: 1074 KV--AQVACGLFHTVVVTSSQQVYTFGRHPQVWKQYLQNSRRQARASTSYTQSPA-KHAM 1130
Query: 237 GPHGPKFQDPV-----------QVACGAAHTVLVT----------------DDGYKLWSW 269
G G F+ P+ QV GA H +L+T D K+W W
Sbjct: 1131 GLSGELFK-PLWVQCRVEGRIRQVVAGAVHNMLLTSSVVAIAAGEDFSVAVDRSGKVWVW 1189
Query: 270 GRGRSGVLG 278
GR G LG
Sbjct: 1190 GRNSHGQLG 1198
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 103/234 (44%), Gaps = 39/234 (16%)
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG----LGDRESRLRPKIIETFNQD 117
V+CG +HV L G Y+WG + G+LG LGD + P +ET +
Sbjct: 870 VSCGQQHVALLTEEG---------VYTWGKPHQGRLGHGQLLGD-SGYVPPMRVETLSIQ 919
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V V CG HT L ++ + +G GQLG G P V +L
Sbjct: 920 R-VQVMAVACGQEHTLALC---------DNGVYAWGSSTYGQLGLGDWDRQTHPTLVTQL 969
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
V+ V+V G +H++ + G VW WG G+ + L + A + P L++
Sbjct: 970 KD-VFCVAVATGQYHSAALDGEGRVWMWGW--GV----HGQLGQGNAENLNKPHLVAA-- 1020
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
Q+ VQV+ G AHT ++T G +++++G G G LG G T P V
Sbjct: 1021 -----VQNAVQVSTGYAHTAVLTRSG-EVFTFGCGLHGQLGHGATDKVSIPQRV 1068
>gi|76678806|ref|XP_586049.2| PREDICTED: RCC1 and BTB domain-containing protein 1-like, partial
[Bos taurus]
Length = 425
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 91/208 (43%), Gaps = 22/208 (10%)
Query: 85 VCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDM 144
V Y+WG N QLG G L P I+ V EV CGS H+ L
Sbjct: 2 VVYAWGHNGYSQLGNGTTNQGLAP--IQVCTNLLIKQVVEVACGSHHSMALA-------- 51
Query: 145 LESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+ + +G GQ+G G+T + P +V +V + CG + V G+V+
Sbjct: 52 ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYG 111
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD+G
Sbjct: 112 WGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTDEGL 160
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
L++WG G LGTG + +PA ++
Sbjct: 161 -LYAWGANTYGQLGTGNKNNLLSPAHIM 187
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 129/322 (40%), Gaps = 54/322 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + VV+VACGS H +AL + GE
Sbjct: 1 GVVYAWGHNGYSQLGNGTTNQGLAPIQVCTNLLI-----KQVVEVACGSHHSMALAADGE 55
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
++WG NN GQ+G G ++ P+ + N V + CG + +
Sbjct: 56 V--------FAWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKRVVGIACGQTSSMAVL- 104
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 105 -----DNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 156
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV-ACGAAHT 256
G +++WG L + +SP I + + +++ AC +AHT
Sbjct: 157 DEGLLYAWGANT------YGQLGTGNKNNLLSPAHIM------VEKERVIEIAACHSAHT 204
Query: 257 VLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNT 307
G ++ WG RG+S L T FA V W L+ E +D L
Sbjct: 205 SAAKTQGGHVYMWGQCRGQSVTLPHLTHLSSTDDVFACFATPAVTWRLLSVE-HEDFLTV 263
Query: 308 GGLDDEIKTKDLEGAEERDEKL 329
E K+ + E D K
Sbjct: 264 A----ESLKKEFDSPETADLKF 281
>gi|110637510|ref|YP_677717.1| alpha-tubulin suppressor [Cytophaga hutchinsonii ATCC 33406]
gi|110280191|gb|ABG58377.1| alpha-tubulin suppressor [Cytophaga hutchinsonii ATCC 33406]
Length = 911
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 117/278 (42%), Gaps = 45/278 (16%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
S+ A S+ + G +W WG P T+G + SPV +A G
Sbjct: 476 SIAASNAFSMGLKANGTIWTWGLNPF---ETDGQYK-----NSSPVQTGSDQNWKSIATG 527
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S +++AL + G ++WG N +GQLG G + R+ PK I T + W
Sbjct: 528 SNYILALKADG--------TLWAWGDNFSGQLGDGTEQPRMLPKQIGTA---TTWVSIAA 576
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
G + + W++G +G+LG GT LVP +V + +S
Sbjct: 577 ASGVQSFGI---------QADGSLWSWGHNYDGELGLGTNLKTLVPTRVGTGTDW---IS 624
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
+ G+ HT + S G +W WG + G + +L + P+ + + +D
Sbjct: 625 IKTGVGHTLGIKSDGTLWGWGTNR-QGQLGDGTLV-----NKYVPVQLGTD-------RD 671
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
+ +A G H + + +G LW+WGR G +GTG I
Sbjct: 672 WINIAGGTIHNICLKSNG-TLWAWGRNNYGQVGTGNLI 708
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 121/294 (41%), Gaps = 55/294 (18%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+V G +LA+ G LW WG L D +T + +P
Sbjct: 172 VAVATGSSYTLALKADGTLWSWGKNQRGQLGDGTT------IDRHSP------------- 212
Query: 62 VACGSEH----VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V G+E + A S+G K + ++WG NN G+LG+G+ + + P + D
Sbjct: 213 VQIGTEQTWTGIAACFSSGIGIKANGTL-WTWGFNNGGELGIGNNDEKHTPVQV---GAD 268
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
W +Y V GS H L ++ W +GL E G++G+G T P +V
Sbjct: 269 QNW-LYAV-AGSNHIVAL--------KVDGSLWGWGLNEAGEIGNGNTVQQDSPVRVGTD 318
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ L + G HT + S G +W+WG G N + T + A P+ + +
Sbjct: 319 NDWTTLAA---GSNHTLAIKSNGTLWAWGHNV-RGNLGNGTATLDP---ATLPVQVGTDA 371
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
D ++V+ G H+V + +G LW+WG G LG G D P +
Sbjct: 372 -------DWIRVSAGLDHSVALKANG-TLWAWGYNVRGQLGYGSGTDKHLPVQI 417
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 116/320 (36%), Gaps = 70/320 (21%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPS-PVWDFHGHTVVKVACG 65
V AG S+A+ G LW WG + G S PV HT V + G
Sbjct: 376 VSAGLDHSVALKANGTLWAWG------YNVRGQLGYGSGTDKHLPVQIGTAHTWVAINAG 429
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD-------- 117
+ H + + + G ++WG N N QLG G + P I T D
Sbjct: 430 TYHTIGVKADGS--------LWTWGDNTNAQLGDGGTADQPVPHSIRTAPDDWISIAASN 481
Query: 118 -------SPWAVYEVTCGSFHTALLTHRKRP----------------NDML----ESMCW 150
+ ++ F T P N +L + W
Sbjct: 482 AFSMGLKANGTIWTWGLNPFETDGQYKNSSPVQTGSDQNWKSIATGSNYILALKADGTLW 541
Query: 151 TFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG--ME 208
+G +GQLG GT Q ++P+Q+ +V + + + + + G +WSWG +
Sbjct: 542 AWGDNFSGQLGDGTEQPRMLPKQIGTATTWVSIAAASG--VQSFGIQADGSLWSWGHNYD 599
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
LGL N + P + G G D + + G HT+ + DG LW
Sbjct: 600 GELGLGTNLK--------TLVPTRV-GTG------TDWISIKTGVGHTLGIKSDG-TLWG 643
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG R G LG G ++ + P
Sbjct: 644 WGTNRQGQLGDGTLVNKYVP 663
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 114/262 (43%), Gaps = 48/262 (18%)
Query: 12 MMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVA 71
+++L +D G+LW WG L ++ G + V +P V + T + A GS H +A
Sbjct: 281 IVALKVD--GSLWGWG---LNEAGEIGNGNTVQQDSPVRVGTDNDWTTL--AAGSNHTLA 333
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET-FNQDSPWAVYEVTCGSF 130
+ S G ++WG N G LG G + L P + D+ W V+ G
Sbjct: 334 IKSNG--------TLWAWGHNVRGNLGNG--TATLDPATLPVQVGTDADW--IRVSAGLD 381
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
H+ L + N L W +G GQLG+G+ +P Q+ +V +++ G
Sbjct: 382 HSVAL----KANGTL----WAWGYNVRGQLGYGSGTDKHLPVQIGTAHTWV---AINAGT 430
Query: 191 FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF--QDPVQ 248
+HT V + G +W+WG N + + G A P+ PH + D +
Sbjct: 431 YHTIGVKADGSLWTWG--------DNTNAQLGDGGTADQPV------PHSIRTAPDDWIS 476
Query: 249 VACGAAHTVLVTDDGYKLWSWG 270
+A A ++ + +G +W+WG
Sbjct: 477 IAASNAFSMGLKANG-TIWTWG 497
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 96/250 (38%), Gaps = 49/250 (19%)
Query: 57 HTVVKVAC---------GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
HT V+V GS H+VAL G + WG N G++G G+ +
Sbjct: 260 HTPVQVGADQNWLYAVAGSNHIVALKVDGS--------LWGWGLNEAGEIGNGNTVQQDS 311
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT-- 165
P + T D+ W + GS HT + + N L W +G G LG+GT
Sbjct: 312 PVRVGT---DNDWTT--LAAGSNHTLAI----KSNGTL----WAWGHNVRGNLGNGTATL 358
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225
A +P QV ++ V GL H+ + + G +W+WG L
Sbjct: 359 DPATLPVQVGTDADWI---RVSAGLDHSVALKANGTLWAWGYNV------RGQLGYGSGT 409
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
D P+ I V + G HT+ V DG LW+WG + LG G T D
Sbjct: 410 DKHLPVQIG-------TAHTWVAINAGTYHTIGVKADG-SLWTWGDNTNAQLGDGGTADQ 461
Query: 286 FAPAIVLWPP 295
P + P
Sbjct: 462 PVPHSIRTAP 471
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 87/208 (41%), Gaps = 36/208 (17%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
+ WG N+NGQLG G R P I D W V GS +T L +
Sbjct: 141 WGWGYNSNGQLGDGTTMDRRTPVKIGI---DINWVA--VATGSSYTLAL--------KAD 187
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSV-VSSAGDVWSW 205
W++G + GQLG GTT P Q+ + + + F + + + + G +W+W
Sbjct: 188 GTLWSWGKNQRGQLGDGTTIDRHSPVQIGTEQTWTGIAAC----FSSGIGIKANGTLWTW 243
Query: 206 GMEKG--LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
G G LG+ N + +P+ + + Q+ + G+ H V + DG
Sbjct: 244 GFNNGGELGIGNND--------EKHTPVQVGAD-------QNWLYAVAGSNHIVALKVDG 288
Query: 264 YKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
LW WG +G +G G T+ +P V
Sbjct: 289 -SLWGWGLNEAGEIGNGNTVQQDSPVRV 315
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 120/329 (36%), Gaps = 76/329 (23%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-----WDFHGHTV 59
++ AG +LAI + G LW WG+ + + G +L + P V W
Sbjct: 322 TTLAAGSNHTLAIKSNGTLWAWGH-NVRGNLGNGTATLDPATLPVQVGTDADW------- 373
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++V+ G +H VAL + G ++WG N GQLG G + P I T +
Sbjct: 374 IRVSAGLDHSVALKANG--------TLWAWGYNVRGQLGYGSGTDKHLPVQIGTAHT--- 422
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
W + G++HT + + WT+G N QLG G T VP ++ P
Sbjct: 423 WVA--INAGTYHTIGV--------KADGSLWTWGDNTNAQLGDGGTADQPVPHSIRTAPD 472
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGME----------------------KGLGLCPNA 217
+S+ + + + G +W+WG+ K + N
Sbjct: 473 D--WISIAASNAFSMGLKANGTIWTWGLNPFETDGQYKNSSPVQTGSDQNWKSIATGSNY 530
Query: 218 SL------TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK------ 265
L T GD S L G+G P+ P Q+ + G +
Sbjct: 531 ILALKADGTLWAWGDNFSGQL--GDGTEQPRML-PKQIGTATTWVSIAAASGVQSFGIQA 587
Query: 266 ---LWSWGRGRSGVLGTGKTIDFFAPAIV 291
LWSWG G LG G + P V
Sbjct: 588 DGSLWSWGHNYDGELGLGTNLKTLVPTRV 616
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 14/93 (15%)
Query: 199 AGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVL 258
+G++W WG N L D +P+ I + + V VA G+++T+
Sbjct: 137 SGELWGWGYNS------NGQLGDGTTMDRRTPVKIGID-------INWVAVATGSSYTLA 183
Query: 259 VTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ DG LWSWG+ + G LG G TID +P +
Sbjct: 184 LKADG-TLWSWGKNQRGQLGDGTTIDRHSPVQI 215
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 33/190 (17%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
S+K G +L I + G LW WG G +LV+ + P + + +A G
Sbjct: 624 SIKTGVGHTLGIKSDGTLWGWGT---NRQGQLGDGTLVNKYVPVQL--GTDRDWINIAGG 678
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
+ H + L S G ++WG NN GQ+G G+ ++ R +++ + + VY
Sbjct: 679 TIHNICLKSNG--------TLWAWGRNNYGQVGTGNLITQDR--MVQISAEQNWIDVYAS 728
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT--QSALVPEQVKELPQYVYL 183
SF + W GL +GQLG GT+ ++A+V +
Sbjct: 729 LDQSFAI-----------RADGSLWACGLNSSGQLGDGTSVDRAAMVAVGTNQ-----KW 772
Query: 184 VSVDCGLFHT 193
+S+ G +HT
Sbjct: 773 ISLAAGNYHT 782
>gi|449499989|ref|XP_004174916.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
ligase HERC3-like [Taeniopygia guttata]
Length = 1050
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 137/297 (46%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHT 58
I V G S+A+ + G L+ WG + ++G L + P + + T
Sbjct: 85 HIVHVACGESHSVALSDQGQLFSWG------AGSDGQLGLTTIEDAVTVPRLIKKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
+++V+CG+ H +AL + G+ + +WG N+ GQLGLG S+ P+ +++ +
Sbjct: 139 ILQVSCGNWHCLALAADGQFF--------TWGQNSYGQLGLGKECPSQASPQRVKSLD-G 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G +GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGKNSSGQLGLSDERDRESPCHVKLL 239
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 240 -RSQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVSQIACGRHHTLAFVPSSGMIYAFGCGTRGQLGTGHTCNVKCPSPV 341
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 116/253 (45%), Gaps = 48/253 (18%)
Query: 48 PSP-VWDF-HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P P V+ F H V +VACG H V L+ GE Y + G N GQLG D E
Sbjct: 23 PEPQVYGFIHDRNVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLG-HDCEGS 73
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
+I Q + V CG H+ L+ + + +++G G +GQLG T
Sbjct: 74 KPEQIGALAGQH----IVHVACGESHSVALSDQGQ--------LFSWGAGSDGQLGLTTI 121
Query: 166 QSAL-VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGL-CPN-AS 218
+ A+ VP +K+L Q ++ V CG +H +++ G ++WG + GLG CP+ AS
Sbjct: 122 EDAVTVPRLIKKLNQQT-ILQVSCGNWHCLALAADGQFFTWGQNSYGQLGLGKECPSQAS 180
Query: 219 LTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
R ++ D I P+ QVA G AH+ ++ G ++ WG+ SG LG
Sbjct: 181 PQRVKSLDGI-PL---------------AQVAAGGAHSFALSLSG-AVFGWGKNSSGQLG 223
Query: 279 TGKTIDFFAPAIV 291
D +P V
Sbjct: 224 LSDERDRESPCHV 236
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 25/174 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFS-LVSSFTPSPVWDFHGHTVVKV 62
+ V AGG S A+ +GA++ WG +SS + G S +P V VV +
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWGK----NSSGQLGLSDERDRESPCHVKLLRSQKVVYI 247
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWA 121
+CG EH L +G + ++GA + GQLG + P+ ++E +
Sbjct: 248 SCGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE---- 295
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V ++ CG HT P+ M + FG G GQLG G T + P VK
Sbjct: 296 VSQIACGRHHTLAFV----PSS---GMIYAFGCGTRGQLGTGHTCNVKCPSPVK 342
>gi|348688462|gb|EGZ28276.1| hypothetical protein PHYSODRAFT_476799 [Phytophthora sojae]
Length = 1699
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 115/247 (46%), Gaps = 40/247 (16%)
Query: 50 PVWDFHGHTVVKVAC--GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
PV V +A G EH++AL G + YSWG N+ GQLG + +++
Sbjct: 407 PVQALRSQRVKFIAASNGCEHMIALTDTG--------LAYSWGYNDRGQLGHENLATKIH 458
Query: 108 -PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
PK+IE+ +D V+ H+A++T +TFG+ + GQLG TQ
Sbjct: 459 VPKLIESL-KDKKLGFASVS--YHHSAVITDAGE--------LYTFGMNDCGQLGLDHTQ 507
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEA 224
P+ VK L + + V CGL+HT + ++AG++++ G LGL N +
Sbjct: 508 HQSTPQLVKSL-EATEVSMVACGLYHTIICTAAGELFTCGKNDYGQLGLAHNRQIKL--- 563
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
P L++ + VACG H+V+V+ G + +S+GR G LG G +
Sbjct: 564 -----PTLVALPN------EMVSFVACGYYHSVVVSTGG-RAFSFGRNDYGQLGIGSKVH 611
Query: 285 FFAPAIV 291
P +V
Sbjct: 612 QNVPNVV 618
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 89/218 (40%), Gaps = 30/218 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S I +AG L+ +G + D G TP V V VACG H +
Sbjct: 481 SAVITDAGELYTFG---MNDCGQLGLDHTQHQSTPQLVKSLEATEVSMVACGLYHTIICT 537
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
+AGE ++ G N+ GQLGL P ++ N+ V V CG +H+
Sbjct: 538 AAGE--------LFTCGKNDYGQLGLAHNRQIKLPTLVALPNE----MVSFVACGYYHSV 585
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
+++ R ++FG + GQLG G+ VP V L +V CG +HT
Sbjct: 586 VVSTGGR--------AFSFGRNDYGQLGIGSKVHQNVP-NVVALSSNTRMVRATCGCYHT 636
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPI 231
++S G V+ +G L + DA+ P+
Sbjct: 637 VLLSEQGQVYVFGRNN------KGQLGNRGSADALLPV 668
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 21/137 (15%)
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VACG H V + + G + S+G N+ GQLG+G + + P ++ S
Sbjct: 577 VACGYYHSVVVSTGGRAF--------SFGRNDYGQLGIGSKVHQNVPNVVAL---SSNTR 625
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY- 180
+ TCG +HT LL+ + + FG GQLG+ + AL+P +K P+
Sbjct: 626 MVRATCGCYHTVLLSE--------QGQVYVFGRNNKGQLGNRGSADALLPVPLKVRPEKN 677
Query: 181 -VYLVSVDCGLFHTSVV 196
V V G + TS++
Sbjct: 678 SRRCVDVAAGFYTTSLI 694
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 58/148 (39%), Gaps = 16/148 (10%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
V G S+ + G + +G D G S V P+ V +V+ CG
Sbjct: 577 VACGYYHSVVVSTGGRAFSFGR---NDYGQLGIGSKVHQNVPNVVALSSNTRMVRATCGC 633
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
H V L G+ Y +G NN GQLG L P ++ + + +V
Sbjct: 634 YHTVLLSEQGQVY--------VFGRNNKGQLGNRGSADALLPVPLKVRPEKNSRRCVDVA 685
Query: 127 CGSFHTALLTHRKRPND-----MLESMC 149
G + T+L+ RKR ND ML+ C
Sbjct: 686 AGFYTTSLIVERKRENDDGDVIMLDQSC 713
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 86/213 (40%), Gaps = 36/213 (16%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
YS G N+ G+LG GD R + + D + +V G+ A+LT+ E
Sbjct: 331 YSCGQNSYGELGTGDDIERHQLTSVSLCGWDD---IRQVVSGNETLAVLTN--------E 379
Query: 147 SMCWTFGLGENGQLGHGT-TQSALVPEQVKEL-PQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+ T GL ++GQ G G + ++ V+ L Q V ++ G H ++ G +S
Sbjct: 380 GVVLTCGLNKSGQCGQGHFDERVMMLRPVQALRSQRVKFIAASNGCEHMIALTDTGLAYS 439
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ------VACGAAHTVL 258
WG R + G I H PK + ++ + H+ +
Sbjct: 440 WGYND-----------RGQLGHENLATKI-----HVPKLIESLKDKKLGFASVSYHHSAV 483
Query: 259 VTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+TD G +L+++G G LG T P +V
Sbjct: 484 ITDAG-ELYTFGMNDCGQLGLDHTQHQSTPQLV 515
>gi|332028555|gb|EGI68592.1| Putative E3 ubiquitin-protein ligase HERC4 [Acromyrmex echinatior]
Length = 1049
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 129/293 (44%), Gaps = 46/293 (15%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV--SSFTPSPVWDFHGHTVVKVAC 64
+ G +LA++ G L+ WG C + + + G + V + P + + +V++AC
Sbjct: 89 IACGNCHTLAVNEWGQLFSWG-C---NMNGQLGLNSVDCTERVPRMIKVLGTNVIVQIAC 144
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES-RLRPKIIETFNQDSPWAVY 123
G+EH +AL + GE Y +WG+N GQLGLG + ++PK I T + +
Sbjct: 145 GTEHSIALTNDGELY--------AWGSNREGQLGLGSYTTTEIKPKRISTL---AAVPIA 193
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
+ CG +HT +++ +++G GQLG Q +P Q++ L + +
Sbjct: 194 FIACGGYHTIVISK--------SGAVFSWGRNTFGQLGLNDVQQRNLPCQLRTL-RNAKV 244
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
CG + ++ G V++ G + G G N L R S +
Sbjct: 245 CYATCGEEFSVFLTMDGGVFTCGAGMYGQLGHGNTTNEILPRQVMELMGSTV-------- 296
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
Q++CG HT+ + ++++WG G +G LG + P +VL
Sbjct: 297 -------TQISCGKRHTLALVPSRGRVYAWGLGGAGQLGNRASQSATTPQVVL 342
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 111/244 (45%), Gaps = 38/244 (15%)
Query: 38 GGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQL 97
GG + F P V V ++ACG + VA+ G+ YS G N+ GQ
Sbjct: 15 GGIEDENIFMPREVDFIEASNVEQIACGENYTVAITKEGKV--------YSCGNNDYGQ- 65
Query: 98 GLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN 157
LG ++R R ++I + + ++ CG+ HT + N+ + W G N
Sbjct: 66 -LGHEKARKRLQLIPGLD---AFVFRKIACGNCHTLAV------NEWGQLFSW--GCNMN 113
Query: 158 GQLGHGTTQ-SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLC 214
GQLG + + VP +K L V +V + CG H+ +++ G++++WG E LGL
Sbjct: 114 GQLGLNSVDCTERVPRMIKVLGTNV-IVQIACGTEHSIALTNDGELYAWGSNREGQLGL- 171
Query: 215 PNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRS 274
S T E I P IS F +ACG HT++++ G ++SWGR
Sbjct: 172 --GSYTTTE----IKPKRISTLAAVPIAF-----IACGGYHTIVISKSG-AVFSWGRNTF 219
Query: 275 GVLG 278
G LG
Sbjct: 220 GQLG 223
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 94/198 (47%), Gaps = 31/198 (15%)
Query: 87 YSWGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDM 144
+ WG+ +G+LGLG + E+ P+ ++ + V ++ CG +T +T
Sbjct: 2 FCWGSTIHGELGLGGIEDENIFMPREVDFIEASN---VEQIACGENYTVAITK------- 51
Query: 145 LESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
E ++ G + GQLGH + L + + L +V+ + CG HT V+ G ++S
Sbjct: 52 -EGKVYSCGNNDYGQLGHEKARKRL--QLIPGLDAFVFR-KIACGNCHTLAVNEWGQLFS 107
Query: 205 WG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
WG M LGL R P +I G + VQ+ACG H++ +T+D
Sbjct: 108 WGCNMNGQLGLNSVDCTER-------VPRMIKVLGTNV-----IVQIACGTEHSIALTND 155
Query: 263 GYKLWSWGRGRSGVLGTG 280
G +L++WG R G LG G
Sbjct: 156 G-ELYAWGSNREGQLGLG 172
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 25/173 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT-PSPVWDFHGHTVVKV 62
I + GG ++ I +GA++ WG ++ + G + V P + V
Sbjct: 192 IAFIACGGYHTIVISKSGAVFSWGR----NTFGQLGLNDVQQRNLPCQLRTLRNAKVCYA 247
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
CG E V L G ++ GA GQLG G+ + + P+ + + V
Sbjct: 248 TCGEEFSVFLTMDGGV--------FTCGAGMYGQLGHGNTTNEILPRQVMELMGST---V 296
Query: 123 YEVTCGSFHT-ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
+++CG HT AL+ R R + +GLG GQLG+ +QSA P+ V
Sbjct: 297 TQISCGKRHTLALVPSRGR--------VYAWGLGGAGQLGNRASQSATTPQVV 341
>gi|149042013|gb|EDL95854.1| rCG58270 [Rattus norvegicus]
Length = 3507
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 2740 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 2796
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ +++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 2797 SDGK--------LFTFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 2845
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 2846 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 2897
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 2898 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 2946
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P +V
Sbjct: 2947 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 2983
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 2887 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 2940
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 2941 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 2990
Query: 121 AVYEVTCGSFHTALLT 136
+ +++ G H+A T
Sbjct: 2991 -IRQISAGRCHSAAWT 3005
>gi|408501033|ref|YP_006864952.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
gi|408465857|gb|AFU71386.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
Length = 1190
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 119/303 (39%), Gaps = 44/303 (14%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTP----SPVWDFHGHTVV 60
V AG SLA+ + G + WG D G + TP P T V
Sbjct: 738 VQVSAGSQHSLAVGSDGNAYAWGRN---DDGRLGDGTSTDQHTPVRVKKPAGTSTDFTYV 794
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG---DRESRLRPKIIETFNQD 117
+V+ G H +AL G D Y+WG NN+GQLG G DR + +R K + D
Sbjct: 795 QVSAGYHHSLAL--------GSDGNAYAWGYNNSGQLGDGTSTDRATSVRVKKPAGTSTD 846
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE- 176
+ +V+ G+FH+ L + + +GL GQLG GT+ P +V
Sbjct: 847 --FTYVQVSAGAFHSLALGS--------DGNAYAWGLNNFGQLGDGTSTDRATPVKVGTP 896
Query: 177 --LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS--PIL 232
P + G H+ V S G ++WG + L N G S P
Sbjct: 897 AGTPTDFTYAQIGAGYLHSLAVGSDGYAYAWGYNF------SGQLGNNSKGGFFSPNPNP 950
Query: 233 ISGNGPHGPKFQD----PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ P P D V V G H++ + DG ++WG +G LG + D P
Sbjct: 951 VRVRNPASPNDADKGLKAVNVTAGFWHSLALGSDG-NAYAWGFNSNGQLGNNSSKDSTVP 1009
Query: 289 AIV 291
+V
Sbjct: 1010 VLV 1012
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 106/236 (44%), Gaps = 30/236 (12%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP-KIIETFNQ 116
T V+V+ GS+H +A+ G D Y+WG N++G+LG G + P ++ +
Sbjct: 736 TYVQVSAGSQHSLAV--------GSDGNAYAWGRNDDGRLGDGTSTDQHTPVRVKKPAGT 787
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ + +V+ G H+ L + + +G +GQLG GT+ +VK+
Sbjct: 788 STDFTYVQVSAGYHHSLALGS--------DGNAYAWGYNNSGQLGDGTSTDRATSVRVKK 839
Query: 177 LP----QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
+ Y V V G FH+ + S G+ ++WG+ G + + T D +P+
Sbjct: 840 PAGTSTDFTY-VQVSAGAFHSLALGSDGNAYAWGLNN-FGQLGDGTST-----DRATPVK 892
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ G P Q+ G H++ V DGY ++WG SG LG FF+P
Sbjct: 893 V-GTPAGTPTDFTYAQIGAGYLHSLAVGSDGYA-YAWGYNFSGQLGNNSKGGFFSP 946
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 119/291 (40%), Gaps = 43/291 (14%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWG---NCPLPD-SSTEGGFSLVSSFTPSPVWDFHGHTVV 60
V AG SLA+ + G + WG + L D +ST+ S+ DF T V
Sbjct: 794 VQVSAGYHHSLALGSDGNAYAWGYNNSGQLGDGTSTDRATSVRVKKPAGTSTDF---TYV 850
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRP-KIIETFNQDSP 119
+V+ G+ H +AL G D Y+WG NN GQLG G R P K+ +
Sbjct: 851 QVSAGAFHSLAL--------GSDGNAYAWGLNNFGQLGDGTSTDRATPVKVGTPAGTPTD 902
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPE------- 172
+ ++ G H+ + + + +G +GQLG+ + P
Sbjct: 903 FTYAQIGAGYLHSLAVGS--------DGYAYAWGYNFSGQLGNNSKGGFFSPNPNPVRVR 954
Query: 173 ---QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
+ + + V+V G +H+ + S G+ ++WG N L N + D+
Sbjct: 955 NPASPNDADKGLKAVNVTAGFWHSLALGSDGNAYAWGFNS------NGQLGNNSSKDSTV 1008
Query: 230 PILISGNGP--HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
P+L+S + K V V+ G H++ + DG ++WG G LG
Sbjct: 1009 PVLVSDSASPTDTSKGLKAVLVSTGQYHSLALGSDG-NAYAWGDNGYGQLG 1058
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 30/243 (12%)
Query: 81 GEDLVCYSWGANNNGQLGLG--DRESRLRPKIIETFNQ----DSP--WAVYEVTCGSFHT 132
G D Y+WG N G+LG G +R P +++ ++ D P + +V+ GS H+
Sbjct: 688 GSDGNAYAWGGNKKGELGDGTTSENARSTPVMVKQPDRKTYPDLPADFTYVQVSAGSQHS 747
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP----QYVYLVSVDC 188
+ + + +G ++G+LG GT+ P +VK+ + Y V V
Sbjct: 748 LAVGS--------DGNAYAWGRNDDGRLGDGTSTDQHTPVRVKKPAGTSTDFTY-VQVSA 798
Query: 189 GLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ 248
G H+ + S G+ ++WG L S R + P S + + VQ
Sbjct: 799 GYHHSLALGSDGNAYAWGYNNSGQLGDGTSTDRATSVRVKKPAGTSTDFTY-------VQ 851
Query: 249 VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT-EEFKQDELNT 307
V+ GA H++ + DG ++WG G LG G + D P V P T +F ++
Sbjct: 852 VSAGAFHSLALGSDG-NAYAWGLNNFGQLGDGTSTDRATPVKVGTPAGTPTDFTYAQIGA 910
Query: 308 GGL 310
G L
Sbjct: 911 GYL 913
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 105/249 (42%), Gaps = 41/249 (16%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTP--SPVWDFHGHTV 59
V AG SLA+ + G + WG L D ++ + V TP +P DF T
Sbjct: 850 VQVSAGAFHSLALGSDGNAYAWGLNNFGQLGDGTSTDRATPVKVGTPAGTPT-DF---TY 905
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL--RPKIIETFNQD 117
++ G H +A+ G D Y+WG N +GQLG + P + N
Sbjct: 906 AQIGAGYLHSLAV--------GSDGYAYAWGYNFSGQLGNNSKGGFFSPNPNPVRVRNPA 957
Query: 118 SP------WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
SP VT G +H+ L + + +G NGQLG+ +++ + VP
Sbjct: 958 SPNDADKGLKAVNVTAGFWHSLALGS--------DGNAYAWGFNSNGQLGNNSSKDSTVP 1009
Query: 172 EQVKE------LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASL-TRNEA 224
V + + + V V G +H+ + S G+ ++WG + G G N S+ T +
Sbjct: 1010 VLVSDSASPTDTSKGLKAVLVSTGQYHSLALGSDGNAYAWG-DNGYGQLGNNSIPTGSNN 1068
Query: 225 GDAISPILI 233
+A SP+ +
Sbjct: 1069 NEARSPVPV 1077
>gi|444917133|ref|ZP_21237237.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
gi|444711259|gb|ELW52206.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
Length = 1081
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 124/278 (44%), Gaps = 46/278 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I +V AG + SLA+ G +W WG+ + S + G V++ T H VV +A
Sbjct: 804 IEAVAAGALFSLALSCDGGVWAWGD----NGSGQLGDGAVTARTAPARVPGLAH-VVAIA 858
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS+H +A+ + D ++WGAN +GQLG G SR P ++ V
Sbjct: 859 AGSDHALAVRA--------DGTVWAWGANGSGQLGDGTTTSRAVPMQVKELVD-----VV 905
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
V GS H+ L R + W +G +GQLG GTT S +P V L +
Sbjct: 906 AVAGGSGHS--LAVRA------DGTVWAWGANGSGQLGDGTTTSRTLPVFVSTLSGVQAI 957
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG-NGPHGPK 242
S G H+ ++ G VW+WG L + +R P+ +SG +G G
Sbjct: 958 AS---GAQHSLALAEGGVVWAWGANGSGQLGDGTTTSRTR------PVQVSGLSGVQG-- 1006
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ GA+ ++ +T K+WSWG +G LG G
Sbjct: 1007 ------LVAGASFSLALTPG--KVWSWGNNSAGQLGDG 1036
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 127/333 (38%), Gaps = 77/333 (23%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+++ +G + A+ G +W WG+ L +S +P PV V
Sbjct: 701 FARVQGFASGLRTTFALRADGTVWAWGDNSLGQLGNG-----ATSASPVPVQAVGYPRTV 755
Query: 61 KVACGSEHVVALVSAGET------------YKGE-------------------------- 82
+A G++HV+A+ S G Y+G
Sbjct: 756 PLASGAQHVLAVSSDGSVFSFGSNSRGQLGYEGSATQTSPRWLTGPECIEAVAAGALFSL 815
Query: 83 ----DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
D ++WG N +GQLG G +R P + V + GS H L R
Sbjct: 816 ALSCDGGVWAWGDNGSGQLGDGAVTARTAPARVPGLAH-----VVAIAAGSDHA--LAVR 868
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSS 198
+ W +G +GQLG GTT S VP QVKEL V +V+V G H+ V +
Sbjct: 869 A------DGTVWAWGANGSGQLGDGTTTSRAVPMQVKEL---VDVVAVAGGSGHSLAVRA 919
Query: 199 AGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVL 258
G VW+WG L + +R P+ +S +A GA H++
Sbjct: 920 DGTVWAWGANGSGQLGDGTTTSRTL------PVFVS-------TLSGVQAIASGAQHSLA 966
Query: 259 VTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + G +W+WG SG LG G T P V
Sbjct: 967 LAEGGV-VWAWGANGSGQLGDGTTTSRTRPVQV 998
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 113/269 (42%), Gaps = 46/269 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ AG +LA+ G +W WG S G + S P V + VV
Sbjct: 851 LAHVVAIAAGSDHALAVRADGTVWAWGAN---GSGQLGDGTTTSRAVPMQVKELV--DVV 905
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA GS H +A+ + D ++WGAN +GQLG G SR P + T +
Sbjct: 906 AVAGGSGHSLAVRA--------DGTVWAWGANGSGQLGDGTTTSRTLPVFVSTLS----- 952
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + G+ H+ L + W +G +GQLG GTT S P QV L
Sbjct: 953 GVQAIASGAQHSLALAE--------GGVVWAWGANGSGQLGDGTTTSRTRPVQVSGLSGV 1004
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP-H 239
LV+ S+ + G VWSWG N AG L S + P
Sbjct: 1005 QGLVAGAS----FSLALTPGKVWSWG--------------NNSAGQLGDGTLNSRSQPGA 1046
Query: 240 GPKFQDPVQVACGAAHTVLV-TDDGYKLW 267
GP V ++ GA HTV++ +DD + W
Sbjct: 1047 GPTLSSFVALSAGAQHTVVLRSDDSFLSW 1075
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 122/294 (41%), Gaps = 48/294 (16%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
+ AG SL + AG +W WG G S + TP+ V G V VA G+
Sbjct: 53 LAAGLNHSLYVTPAGTVWAWGANA---QGQLGEGSTLQHSTPTQVVGLTG--VTAVAAGN 107
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
H +AL E+ ++WG N +GQLG G + R P + V +
Sbjct: 108 THSMALR--------EEGTVWTWGTNTDGQLGDGVSQ-RSVPAQVAGLT-----GVTAIA 153
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSV 186
G+ H+ L + W +G GQLG G++ S P +V L + +V++
Sbjct: 154 AGNLHSLAL---------INGAVWAWGNNTTGQLGDGSSTSRSTPAKVAGLTE---VVAI 201
Query: 187 DCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 246
G FH+ + G VW+WG L +R+ +P+ +SG
Sbjct: 202 AAGDFHSLALKRDGTVWAWGGNYSGQLGDGTLDSRS------TPVRVSG-------LTGI 248
Query: 247 VQVACGAAHTVLVTDD--GYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTE 298
V +A G +H+V + G K+W+WG G LG G + P V P LT+
Sbjct: 249 VALAGGGSHSVAASSTTLGGKVWAWGDNTYGQLGNGGDVSSLLPLEV--PGLTQ 300
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 111/274 (40%), Gaps = 50/274 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSPVWDFHGHT 58
++ + +V AG S+A+ G +W WG ++T+G G + P+ V G
Sbjct: 97 LTGVTAVAAGNTHSMALREEGTVWTWG------TNTDGQLGDGVSQRSVPAQVAGLTG-- 148
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +A G+ H +AL++ ++WG N GQLG G SR P + +
Sbjct: 149 VTAIAAGNLHSLALING---------AVWAWGNNTTGQLGDGSSTSRSTPAKVAGLTE-- 197
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V + G FH+ L KR + W +G +GQLG GT S P +V L
Sbjct: 198 ---VVAIAAGDFHSLAL---KR-----DGTVWAWGGNYSGQLGDGTLDSRSTPVRVSGLT 246
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS--PILISGN 236
V L S + G VW+WG N GD S P+ +
Sbjct: 247 GIVALAGGGSHSVAASSTTLGGKVWAWG--------DNTYGQLGNGGDVSSLLPLEV--- 295
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG 270
P V +A G +H++ + D +W+WG
Sbjct: 296 ----PGLTQVVALASGTSHSLALRGD-DSVWAWG 324
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 119/281 (42%), Gaps = 48/281 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ I V AG SLA+D++G +W WG+ L D ST S P V
Sbjct: 550 LAVITHVAAGLFHSLALDSSGQVWAWGDNVYGQLGDGST------TSRNVPGRVSGLPAG 603
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+ + G + VAL G D ++WG N+NGQLG G +R P +
Sbjct: 604 -IQAIVAGPSYSVAL--------GADGSVWTWGENSNGQLGDGTTTARPVPARVSL---- 650
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P + ++ HT L M W +G +GQLG+GT S P +V
Sbjct: 651 -PATLVALSTRGSHTVALD--------TTGMLWAWGRNVSGQLGNGTLVSESTPRRV--- 698
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P + + GL T + + G VW+WG + LG N + + SP+ + G
Sbjct: 699 PSFARVQGFASGLRTTFALRADGTVWAWG-DNSLGQLGNGATS-------ASPVPVQAVG 750
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
+ V +A GA H + V+ DG ++S+G G LG
Sbjct: 751 -----YPRTVPLASGAQHVLAVSSDG-SVFSFGSNSRGQLG 785
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 120/292 (41%), Gaps = 42/292 (14%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK-VACGSEHVVALVSAGETY 79
G++W WG+ G +LVS P+PV T V+ ++ S H +AL S
Sbjct: 418 GSVWAWGDNTY---GQLGDGTLVSR--PAPVRLSSTLTSVRALSASSYHSLALRS----- 467
Query: 80 KGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRK 139
D ++WG N GQLG D RP + E+ G++H+ L
Sbjct: 468 ---DGTVWAWGDNAYGQLG--DTSGGRRPSPAQVPGVA---GATEIAAGTYHSLALRS-- 517
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
+ WT+G GQLG G T P +P + V GLFH+ + S+
Sbjct: 518 ------DGTVWTWGDNSYGQLGAGATPRG--PRAPAVVPGLAVITHVAAGLFHSLALDSS 569
Query: 200 GDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLV 259
G VW+WG L ++ +RN P +SG P G + + G +++V +
Sbjct: 570 GQVWAWGDNVYGQLGDGSTTSRNV------PGRVSGL-PAGIQ-----AIVAGPSYSVAL 617
Query: 260 TDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLD 311
DG +W+WG +G LG G T PA V P +T LD
Sbjct: 618 GADG-SVWTWGENSNGQLGDGTTTARPVPARVSLPATLVALSTRGSHTVALD 668
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 125/333 (37%), Gaps = 81/333 (24%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ AG + SLA+ N GA+W WGN + G S S TP+ V VV
Sbjct: 146 LTGVTAIAAGNLHSLALIN-GAVWAWGNN---TTGQLGDGSSTSRSTPAKVAGLT--EVV 199
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H +AL D ++WG N +GQLG G +SR P +
Sbjct: 200 AIAAGDFHSLALK--------RDGTVWAWGGNYSGQLGDGTLDSRSTPVRVSGLT----- 246
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ + G H+ + + L W +G GQLG+G S+L+P +V L Q
Sbjct: 247 GIVALAGGGSHSVAAS-----STTLGGKVWAWGDNTYGQLGNGGDVSSLLPLEVPGLTQV 301
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS--PILISG--- 235
V L S G H+ + VW+WG NA + G ++ P+ +SG
Sbjct: 302 VALAS---GTSHSLALRGDDSVWAWG--------DNAQAQTAQTGTSVQRVPVRVSGVSD 350
Query: 236 --------------------------------NGPHG--------PKFQDPVQVACGAAH 255
NG P +A G H
Sbjct: 351 AQALACGNAFSLVGRGDNVTLGWGANGSGQLGNGSSSVRALPGRVPSLTAGASLAAGDHH 410
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
L DG +W+WG G LG G + AP
Sbjct: 411 VFLRQADG-SVWAWGDNTYGQLGDGTLVSRPAP 442
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 125/291 (42%), Gaps = 49/291 (16%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I ++ AG S+A+ G++W WG N L D +T + P P T+V
Sbjct: 604 IQAIVAGPSYSVALGADGSVWTWGENSNGQLGDGTT--------TARPVPARVSLPATLV 655
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++ H VAL + G + ++WG N +GQLG G S P+ + +F +
Sbjct: 656 ALSTRGSHTVALDTTG--------MLWAWGRNVSGQLGNGTLVSESTPRRVPSFAR---- 703
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
F + L T D W +G GQLG+G T ++ VP Q P+
Sbjct: 704 ------VQGFASGLRTTFALRAD---GTVWAWGDNSLGQLGNGATSASPVPVQAVGYPRT 754
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
V L S G H VSS G V+S+G L S T+ SP ++ G
Sbjct: 755 VPLAS---GAQHVLAVSSDGSVFSFGSNSRGQLGYEGSATQT------SPRWLT-----G 800
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P+ + VA GA ++ ++ DG +W+WG SG LG G APA V
Sbjct: 801 PECIE--AVAAGALFSLALSCDG-GVWAWGDNGSGQLGDGAVTARTAPARV 848
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 117/292 (40%), Gaps = 43/292 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++Q+ ++ +G SLA+ ++W WG+ ++ G +S PV
Sbjct: 298 LTQVVALASGTSHSLALRGDDSVWAWGDNAQAQTAQTG-----TSVQRVPVRVSGVSDAQ 352
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+ACG + +LV G D V WGAN +GQLG G R P + +
Sbjct: 353 ALACG--NAFSLVGRG------DNVTLGWGANGSGQLGNGSSSVRALPGRVPSLT----- 399
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
A + G H L + W +G GQLG GT S P ++
Sbjct: 400 AGASLAAGDHHVFL--------RQADGSVWAWGDNTYGQLGDGTLVSRPAPVRLSSTLTS 451
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
V +S +H+ + S G VW+WG + G + S R SP +
Sbjct: 452 VRALSASS--YHSLALRSDGTVWAWG-DNAYGQLGDTSGGRRP-----SPAQV------- 496
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF-FAPAIV 291
P ++A G H++ + DG +W+WG G LG G T APA+V
Sbjct: 497 PGVAGATEIAAGTYHSLALRSDG-TVWTWGDNSYGQLGAGATPRGPRAPAVV 547
>gi|7406983|gb|AAF61856.1|AF189221_1 HERC2 [Drosophila melanogaster]
Length = 743
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 112/248 (45%), Gaps = 38/248 (15%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P V +G +V +ACGS H A+ ++G +WG G+LG GD E +LR
Sbjct: 10 PKLVEHLNGMSVADIACGSAHSAAITASGHVL--------TWGKGRYGRLGHGDSEDQLR 61
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
PK++E + ++ CGS L N W++G G+ G+LG G +
Sbjct: 62 PKLVEALLG---YRAIDIACGSGDAQTLCITDDDN------VWSWGDGDYGKLGRGGSDG 112
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNE 223
+P +++ L + +V V+CG + ++ +G V++WG KG LG + R +
Sbjct: 113 CKLPYKIESLAG-LGVVKVECGSQFSVALTKSGAVYTWG--KGDFHRLGHGSVDHVRRPK 169
Query: 224 AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
A+ G K + +A G+ H V +D G ++++WG G LG G
Sbjct: 170 KVAAL----------QGKKI---ISIATGSLHCVACSDSG-EVYTWGDNDEGQLGDGTVT 215
Query: 284 DFFAPAIV 291
P +V
Sbjct: 216 AIQWPRLV 223
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 19/143 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V+ G S+A+ +GA++ WG D G S+ P V G ++ +A
Sbjct: 127 VVKVECGSQFSVALTKSGAVYTWGK---GDFHRLGHGSVDHVRRPKKVAALQGKKIISIA 183
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H VA +GE Y+WG N+ GQLG G + P+++ +
Sbjct: 184 TGSLHCVACSDSGEV--------YTWGDNDEGQLGDGTVTAIQWPRLVTALQGKH---IV 232
Query: 124 EVTCGSFH-----TALLTHRKRP 141
+VTCGS H T+ L+ R RP
Sbjct: 233 KVTCGSAHTLALSTSQLSERLRP 255
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 15/121 (12%)
Query: 162 HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTR 221
HG S P+ V+ L + + + CG H++ ++++G V +WG + L
Sbjct: 1 HGNRMSYDRPKLVEHL-NGMSVADIACGSAHSAAITASGHVLTWGKGR------YGRLGH 53
Query: 222 NEAGDAISPILISGNGPHGPKFQDPVQVACGA--AHTVLVTDDGYKLWSWGRGRSGVLGT 279
++ D + P L+ + + +ACG+ A T+ +TDD +WSWG G G LG
Sbjct: 54 GDSEDQLRPKLVEALLGY-----RAIDIACGSGDAQTLCITDDD-NVWSWGDGDYGKLGR 107
Query: 280 G 280
G
Sbjct: 108 G 108
>gi|54261597|gb|AAH84600.1| LOC495281 protein, partial [Xenopus laevis]
Length = 1031
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 97/239 (40%), Gaps = 37/239 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF----TPSPVWDFHGHT 58
QI V G SLA+ ++ WG + G L S P + G
Sbjct: 122 QIVQVACGHHHSLALSKESDIYSWGQ------NQYGQLGLGSEIKKESAPRHIKSLAGIP 175
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+A G H AL +G + WG N GQLGL D R P ++++
Sbjct: 176 FAHIAAGGGHSFALTMSG--------AIFGWGRNKFGQLGLNDETDRSAPALLKSLRSQK 227
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ + CG HTA LT E +TFG G GQLGH +T + P +V EL
Sbjct: 228 ---IIHICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSTNHEVNPRKVFELM 276
Query: 179 QYVYLVSVDCGLFHT-SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + + CG HT + V S+G ++S+ GL N L + SP + GN
Sbjct: 277 GSI-VTQIACGRQHTLAFVPSSGRIYSF------GLGGNGQLGTGSTSNRKSPFTVKGN 328
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 132/303 (43%), Gaps = 46/303 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF--TPSPVWDFHGHTVVK 61
I +V G +LA+++ G ++ WG+ + + G S+ + P + + +V+
Sbjct: 70 IVAVSCGEAHTLALNDKGQVFSWGHA----AHGQIGLSVAEDYIRVPRNIKSLYDIQIVQ 125
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPW 120
VACG H +AL + Y SWG N GQLGLG + P+ I++ P+
Sbjct: 126 VACGHHHSLALSKESDIY--------SWGQNQYGQLGLGSEIKKESAPRHIKSL-AGIPF 176
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
A + G H+ LT + + +G + GQLG P +K L +
Sbjct: 177 A--HIAAGGGHSFALT--------MSGAIFGWGRNKFGQLGLNDETDRSAPALLKSL-RS 225
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
++ + CG HT+ ++ G V+++G G G L N ++P +
Sbjct: 226 QKIIHICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSTNHEVNPRKV------- 272
Query: 241 PKFQ----DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPL 296
F+ Q+ACG HT+ +++S+G G +G LGTG T + +P V L
Sbjct: 273 --FELMGSIVTQIACGRQHTLAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWL 330
Query: 297 TEE 299
T E
Sbjct: 331 THE 333
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 102/239 (42%), Gaps = 34/239 (14%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
F V V CGS H V ++ G Y+ G N+ GQ LG +SR +P +
Sbjct: 15 FINKNVRDVGCGSRHTVFVLDDG--------TVYTCGCNDLGQ--LGHDKSRKKPDQVGA 64
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL-VPE 172
+ + + V+CG HT L ND + W G +GQ+G + + VP
Sbjct: 65 LDAQT---IVAVSCGEAHTLAL------NDKGQVFSW--GHAAHGQIGLSVAEDYIRVPR 113
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
+K L + +V V CG H+ +S D++SWG + L + + + A I +
Sbjct: 114 NIKSLYD-IQIVQVACGHHHSLALSKESDIYSWGQNQYGQLGLGSEIKKESAPRHIKSLA 172
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G F +A G H+ +T G ++ WGR + G LG D APA++
Sbjct: 173 -------GIPF---AHIAAGGGHSFALTMSG-AIFGWGRNKFGQLGLNDETDRSAPALL 220
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 38/239 (15%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P V T+V V+CG H +AL G+ +SWG +GQ+GL E +R
Sbjct: 59 PDQVGALDAQTIVAVSCGEAHTLALNDKGQV--------FSWGHAAHGQIGLSVAEDYIR 110
Query: 108 -PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-T 165
P+ I++ + +V CG H+ L+ ES +++G + GQLG G+
Sbjct: 111 VPRNIKSLYD---IQIVQVACGHHHSLALSK--------ESDIYSWGQNQYGQLGLGSEI 159
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNE 223
+ P +K L + + G H+ ++ +G ++ WG K LGL N+
Sbjct: 160 KKESAPRHIKSLAG-IPFAHIAAGGGHSFALTMSGAIFGWGRNKFGQLGL--------ND 210
Query: 224 AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
D +P L+ + Q + + CG HT +T +G ++++G G G LG T
Sbjct: 211 ETDRSAPALLK-----SLRSQKIIHICCGEDHTAALTKEG-GVFTFGAGGYGQLGHNST 263
>gi|219129772|ref|XP_002185055.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403550|gb|EEC43502.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 727
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 105/219 (47%), Gaps = 37/219 (16%)
Query: 88 SWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGS-----FHTALLTHRKRPN 142
+WG GQLG G R P+ + + +V+ G H+ LLT R
Sbjct: 237 AWGVGRRGQLGHGKRRDERLPRRLRG-GIGYAVRIVQVSAGGGLVRVAHSLLLTSTGR-- 293
Query: 143 DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV------YLVSVDCGLFHTSVV 196
+FG G+ G LGHG + + +P+ ++ PQYV + V G H++VV
Sbjct: 294 ------VLSFGTGQYGALGHGYSAAKQLPDVMR--PQYVEGLAHVRVCCVAAGELHSAVV 345
Query: 197 SSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV--QVACGAA 254
+S GDV++WG G C L + ++P ++ G +D V ++CG+
Sbjct: 346 TSDGDVYTWGD----GFC--GQLGHADKRPQLAPRQVTAGG-----LEDEVVASISCGSR 394
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKT-IDFFAPAIVL 292
HT+ VT+DG +++SWG G GVLG T D+ A A V+
Sbjct: 395 HTLAVTEDG-EVFSWGLGHFGVLGRSFTPFDYDADAAVV 432
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 31/159 (19%)
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR-----LRPKI 110
G +V+VA H + L S G S+G G LG G ++ +RP+
Sbjct: 276 GGGLVRVA----HSLLLTSTGRVL--------SFGTGQYGALGHGYSAAKQLPDVMRPQY 323
Query: 111 IETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALV 170
+E V V G H+A++T + +T+G G GQLGH + L
Sbjct: 324 VEGLAH---VRVCCVAAGELHSAVVTS--------DGDVYTWGDGFCGQLGHADKRPQLA 372
Query: 171 PEQVKE--LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM 207
P QV L V + S+ CG HT V+ G+V+SWG+
Sbjct: 373 PRQVTAGGLEDEV-VASISCGSRHTLAVTEDGEVFSWGL 410
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 114/297 (38%), Gaps = 68/297 (22%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGF---SLVSSFTPSPVWDFHGH 57
+ S+ G +LA+ G ++ WG L S T + + V +FT G
Sbjct: 386 VASISCGSRHTLAVTEDGEVFSWGLGHFGVLGRSFTPFDYDADAAVVNFTVEETLPVDGA 445
Query: 58 TVVKVACGSEHVVALVSA-------------GETYKGEDLVCYSWGANNNGQLGLGDRES 104
+ VA ++V V + G + E + AN L L D
Sbjct: 446 VPIPVARIPDNVAPAVDSFPPRDAAAPALLEGRNFAAELMAHLDLIAN----LSLDDSSD 501
Query: 105 RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
+ PK+IE+ Q P + + G H+ LL+ E ++ G G G LGHG
Sbjct: 502 QCIPKVIESL-QGIP--MVGASAGHRHSLLLSQ--------EGALYSCGAGSGGCLGHGD 550
Query: 165 TQSALVPEQVKEL-------PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGL 213
TQS + P ++ + ++ + G+ + VS+ G V+ WG GLG+
Sbjct: 551 TQSQMHPVRITAFDEPEEDGSERTRILQMSAGVDISMAVSTRGSVYGWGKTDGGRIGLGM 610
Query: 214 CPN-------ASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
N S+ R E G SP+L V V CG H+++V DG
Sbjct: 611 ARNQVTLPRRVSVYREEDG---SPVLA-------------VDVECGYVHSIVVGLDG 651
>gi|229442455|gb|AAI72910.1| guanine nucleotide exchange factor p532 [synthetic construct]
Length = 2441
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 1674 SMALTESGEVFSWGDG---DYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 1730
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 1731 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 1779
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P+++ L + + V CG +
Sbjct: 1780 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCG-IGIKKVACGTQFS 1831
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 1832 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVIIED---VAVGA 1880
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + +G +++WG G LG G T P +V
Sbjct: 1881 EHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTLV 1917
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 1821 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVIIE 1874
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 1875 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTGLQGKN-- 1924
Query: 121 AVYEVTCGSFHTALLTHRKRP 141
V +++ G H+A T P
Sbjct: 1925 -VRQISAGRCHSAAWTAPPVP 1944
>gi|402874534|ref|XP_003901090.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Papio
anubis]
Length = 3314
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 2547 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 2603
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 2604 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 2652
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P+++ L + + V CG +
Sbjct: 2653 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCG-IGIKKVACGTQFS 2704
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 2705 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GMIIED---VAVGA 2753
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + +G +++WG G LG G T P +V
Sbjct: 2754 EHTLALASNG-DVYAWGSNSEGQLGLGHTNHVREPTLV 2790
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 2694 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGMIIE 2747
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 2748 DVAVGAEHTLALASNGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTGLQGKN-- 2797
Query: 121 AVYEVTCGSFHTALLT 136
V +++ G H+A T
Sbjct: 2798 -VRQISAGRCHSAAWT 2812
>gi|307168816|gb|EFN61765.1| RCC1 and BTB domain-containing protein 1 [Camponotus floridanus]
Length = 538
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 109/256 (42%), Gaps = 40/256 (15%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + + ACGS HV+AL GE Y SWG N+ +LG G
Sbjct: 63 STLYPKKIEVLCDKDIKTFACGSGPHVLALTEKGEVY--------SWGHNSYCELGNGTC 114
Query: 103 ESRLRPKIIETFNQDSPW---AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQ 159
L P ++ + + +V CGS H+ LT E + +G GQ
Sbjct: 115 NQGLTPILVNIPTLGAGLNMKCIVDVACGSHHSLALTE--------EGEVYAWGQNNCGQ 166
Query: 160 LGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCP 215
+G + + P QV +V + CG + VV+ G+V+ WG + G+G
Sbjct: 167 VGSNISTNQGSPRQVTSNLAGKKIVHISCGQTSSMVVTDNGEVYGWGYNGVGQLGIGNYV 226
Query: 216 NASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSG 275
N +T + G I ++I +VACG AHT+ ++D+G KL+ WG G
Sbjct: 227 N-QMTPSRVGSLIGVVII--------------KVACGYAHTLALSDEG-KLYVWGGNSYG 270
Query: 276 VLGTGKTIDFFAPAIV 291
LG G + P +V
Sbjct: 271 QLGIGNKTNACNPVLV 286
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 26/197 (13%)
Query: 15 LAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVA 71
LA+ G ++ WG+ C L + + G + + P+ + +V VACGS H +A
Sbjct: 90 LALTEKGEVYSWGHNSYCELGNGTCNQGLTPILVNIPTLGAGLNMKCIVDVACGSHHSLA 149
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
L GE Y+WG NN GQ+G ++ P+ + + + + ++CG
Sbjct: 150 LTEEGEV--------YAWGQNNCGQVGSNISTNQGSPRQVTS--NLAGKKIVHISCGQTS 199
Query: 132 TALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKELPQYVYLVSVDCG 189
+ ++T +G G N GQLG G + + P +V L V ++ V CG
Sbjct: 200 SMVVTDNGE----------VYGWGYNGVGQLGIGNYVNQMTPSRVGSLIG-VVIIKVACG 248
Query: 190 LFHTSVVSSAGDVWSWG 206
HT +S G ++ WG
Sbjct: 249 YAHTLALSDEGKLYVWG 265
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 88/219 (40%), Gaps = 39/219 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG--NCPLPDSSTEGGFSLVSSFTPSP---VWDFH 55
M I V G SLA+ G ++ WG NC S+ +S+ SP +
Sbjct: 134 MKCIVDVACGSHHSLALTEEGEVYAWGQNNCGQVGSN-------ISTNQGSPRQVTSNLA 186
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G +V ++CG + + GE Y WG N GQLG+G+ +++ P + +
Sbjct: 187 GKKIVHISCGQTSSMVVTDNGEV--------YGWGYNGVGQLGIGNYVNQMTPSRVGSL- 237
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
+ +V CG HT L+ E + +G GQLG G +A P V
Sbjct: 238 --IGVVIIKVACGYAHTLALSD--------EGKLYVWGGNSYGQLGIGNKTNACNPVLVT 287
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSA----GDVWSWGMEKG 210
+ D H + +S+A G V+ WG +G
Sbjct: 288 HEMGRI----SDIAALHYNHISTAVGVGGRVYMWGNCRG 322
>gi|384245912|gb|EIE19404.1| RCC1/BLIP-II [Coccomyxa subellipsoidea C-169]
Length = 598
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 37/241 (15%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RE 103
+ P V + V VACG H++A+V G +WG+N GQLG G+
Sbjct: 110 ALEPIRVSALEMNNVHGVACGQGHMLAVVDNGH--------LAAWGSNEYGQLGTGEVGA 161
Query: 104 SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
S +P++++ V G+ H+ LT + ++FG G G LGHG
Sbjct: 162 SAAQPRVLKRIRGAH---FARVAAGATHSLALTSSGQ--------VYSFGEGSFGALGHG 210
Query: 164 TTQSALVPEQVKEL-PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
+ P V+ L P+ + VS+ G + ++ VS +G V++WG K L
Sbjct: 211 DVNNRAKPTLVQALWPEAI--VSIAAGEYFSAAVSLSGRVFTWGRNK------YGQLGNG 262
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
E G+A P + P + VQVACG H + +T G ++++WG SG LG G
Sbjct: 263 EFGNAFLPQPV-------PGIEQAVQVACGDHHCIALTRWG-EVYTWGLHSSGQLGQGSN 314
Query: 283 I 283
+
Sbjct: 315 L 315
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 124/277 (44%), Gaps = 29/277 (10%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
M+ + V G LA+ + G L WG+ T G S+ P + G
Sbjct: 121 MNNVHGVACGQGHMLAVVDNGHLAAWGSNEYGQLGT--GEVGASAAQPRVLKRIRGAHFA 178
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VA G+ H +AL S+G+ Y S+G + G LG GD +R +P +++ P
Sbjct: 179 RVAAGATHSLALTSSGQVY--------SFGEGSFGALGHGDVNNRAKPTLVQAL---WPE 227
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
A+ + G + +A ++ L +T+G + GQLG+G +A +P+ V + Q
Sbjct: 228 AIVSIAAGEYFSAAVS--------LSGRVFTWGRNKYGQLGNGEFGNAFLPQPVPGIEQ- 278
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
V V CG H ++ G+V++WG+ L ++L +A++ L S +
Sbjct: 279 --AVQVACGDHHCIALTRWGEVYTWGLHSSGQLGQGSNL----GSEALNGCLCSPSRVDS 332
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
Q QV+ GA H+ V+ G +LW G G L
Sbjct: 333 LADQSIRQVSAGARHSFFVS-PGEQLWGAGANDEGQL 368
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 112/270 (41%), Gaps = 34/270 (12%)
Query: 22 ALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKG 81
+L+ WG D G +S P PV G VV A GS + + GE
Sbjct: 38 SLYTWGRS---DLGQTGSGRDQNSTAPEPVQALQGKDVVHAAGGSYNSAFVTRDGE---- 90
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
Y+ G+N+ QLG+ RE L P + ++ V+ V CG H +
Sbjct: 91 ----LYTTGSNDARQLGVKGREVALEPIRVSALEMNN---VHGVACGQGHMLAVV----- 138
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
D W G E GQLG G ++ +V + + + V G H+ ++S+G
Sbjct: 139 -DNGHLAAW--GSNEYGQLGTGEVGASAAQPRVLKRIRGAHFARVAAGATHSLALTSSGQ 195
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+S+G E G +L + + P L+ P + V +A G + V+
Sbjct: 196 VYSFG-EGSFG-----ALGHGDVNNRAKPTLVQALWP-----EAIVSIAAGEYFSAAVSL 244
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G ++++WGR + G LG G+ + F P V
Sbjct: 245 SG-RVFTWGRNKYGQLGNGEFGNAFLPQPV 273
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 19/138 (13%)
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
S +T+G + GQ G G Q++ PE V+ L Q +V G ++++ V+ G++++ G
Sbjct: 37 SSLYTWGRSDLGQTGSGRDQNSTAPEPVQAL-QGKDVVHAAGGSYNSAFVTRDGELYTTG 95
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISG---NGPHGPKFQDPVQVACGAAHTVLVTDDG 263
L + E A+ PI +S N HG VACG H + V D+G
Sbjct: 96 SNDARQL----GVKGREV--ALEPIRVSALEMNNVHG--------VACGQGHMLAVVDNG 141
Query: 264 YKLWSWGRGRSGVLGTGK 281
+ L +WG G LGTG+
Sbjct: 142 H-LAAWGSNEYGQLGTGE 158
>gi|147900291|ref|NP_001086738.1| HECT and RLD domain containing E3 ubiquitin protein ligase 4
[Xenopus laevis]
gi|83405253|gb|AAI10973.1| MGC81587 protein [Xenopus laevis]
Length = 897
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 134/302 (44%), Gaps = 44/302 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF--TPSPVWDFHGHTVVK 61
I +V G +LA+++ G ++ WG+ + + G S+ + P + +V+
Sbjct: 86 IVAVSCGEAHTLALNDKGQVFSWGHA----AHGQIGVSIAEDYIRVPRNIKSLSDIQIVQ 141
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPW 120
VACG H +AL Y SWG N GQLGLG ++ P+ I++ + P+
Sbjct: 142 VACGHHHSLALSKESNIY--------SWGQNQYGQLGLGSEKRKESAPRHIKSLS-GIPF 192
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
A + G H+ LT + + +G + GQLG P +K L +
Sbjct: 193 A--HIAAGGGHSFALT--------ISGAIFGWGRNKFGQLGLNDETDRSDPALLKSL-RS 241
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILISGNG 237
++ + CG HT+ ++ G V+++G G G L N A ++P + GN
Sbjct: 242 QKIIYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSASHEVNPRKVFELMGN- 294
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
Q+ACG HT+ +++S+G G +G LG G T + +P++V LT
Sbjct: 295 -------IVTQIACGRQHTLAFVPSSGRIYSFGLGGNGQLGIGSTSNKKSPSMVKGNWLT 347
Query: 298 EE 299
E
Sbjct: 348 HE 349
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 97/239 (40%), Gaps = 37/239 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHT 58
QI V G SLA+ ++ WG + G L S P + G
Sbjct: 138 QIVQVACGHHHSLALSKESNIYSWGQ------NQYGQLGLGSEKRKESAPRHIKSLSGIP 191
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+A G H AL +G + WG N GQLGL D R P ++++
Sbjct: 192 FAHIAAGGGHSFALTISGAI--------FGWGRNKFGQLGLNDETDRSDPALLKSLRSQK 243
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ + CG HTA LT E +TFG G GQLGH + + P +V EL
Sbjct: 244 ---IIYICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSASHEVNPRKVFELM 292
Query: 179 QYVYLVSVDCGLFHT-SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + + CG HT + V S+G ++S+ GL N L + SP ++ GN
Sbjct: 293 GNI-VTQIACGRQHTLAFVPSSGRIYSF------GLGGNGQLGIGSTSNKKSPSMVKGN 344
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 37/199 (18%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E + P+ + F + V +V CG+ HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEVVIEPRRCDFFINKN---VRDVGCGNRHTGFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L + +V+V CG HT ++ G V+SWG
Sbjct: 53 GTVYTCGCNDLGQLGHDKSRKK--PEQVGALDAQI-IVAVSCGEAHTLALNDKGQVFSWG 109
Query: 207 M----EKGLGLCPN-ASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+ G+ + + + RN ++S I I VQVACG H++ ++
Sbjct: 110 HAAHGQIGVSIAEDYIRVPRNIK--SLSDIQI-------------VQVACGHHHSLALSK 154
Query: 262 DGYKLWSWGRGRSGVLGTG 280
+ ++SWG+ + G LG G
Sbjct: 155 ES-NIYSWGQNQYGQLGLG 172
>gi|242077750|ref|XP_002448811.1| hypothetical protein SORBIDRAFT_06g033680 [Sorghum bicolor]
gi|241939994|gb|EES13139.1| hypothetical protein SORBIDRAFT_06g033680 [Sorghum bicolor]
Length = 879
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 127/296 (42%), Gaps = 68/296 (22%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
F P V V +ACG H A+ + G+ Y D G +N G LG G S
Sbjct: 119 FQPRLVESLSICNVELIACGEFHTCAVTATGDLYTWGD------GTHNAGLLGHGSNVSH 172
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
PK + P V V+CG++HTAL+T +TFG G G LGHG
Sbjct: 173 WIPKRVSGPLDGLP--VSTVSCGTWHTALITS--------SGQLYTFGDGTFGVLGHGNR 222
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVV---------SSAGDVWSWG---------M 207
S P++V+ L + + +SV CG++HT+ V +S+G +++WG
Sbjct: 223 ASCSYPKEVESL-KGLRTISVSCGVWHTAAVVEVIISQSNASSGKLFTWGDGDKYRLGHG 281
Query: 208 EKGLGLCPNA-------SLTRNEAGDAIS-------PILISGNGPHG-----------PK 242
++ L P + + G ++ I G+ +G P+
Sbjct: 282 DRSSKLKPTCIPSLIDYNFHKAACGHTLTIGLTTSGHIFTVGSSVYGQLGNPNNDGRYPR 341
Query: 243 FQDP-------VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ V+VACG+ H ++T+ G ++++WG+G +G LG G D P +V
Sbjct: 342 LVEEQLGGGGVVEVACGSYHVAVLTNAG-EVYTWGKGANGRLGHGDIADRKVPTLV 396
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 118/288 (40%), Gaps = 47/288 (16%)
Query: 21 GALWMWGN--CPL-----PDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
G +++WG C D S + P P+ V VACG +H +
Sbjct: 35 GDIYVWGEVICDTISRSGSDRSAYSPGTTTDVLVPKPLESNVMLDVSYVACGVKHAALVT 94
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
E + +WG +G+LG G + +P+++E+ S V + CG FHT
Sbjct: 95 RQSEVF--------TWGEECSGRLGHGTGTNVFQPRLVESL---SICNVELIACGEFHTC 143
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
+T D+ W G G LGHG+ S +P++V + + +V CG +HT
Sbjct: 144 AVT---ATGDLYT---WGDGTHNAGLLGHGSNVSHWIPKRVSGPLDGLPVSTVSCGTWHT 197
Query: 194 SVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
++++S+G ++++ G LG AS + + +++ + + V+C
Sbjct: 198 ALITSSGQLYTFGDGTFGVLGHGNRASCSYPKEVESLKGLRT-------------ISVSC 244
Query: 252 GAAHTVLVTD--------DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G HT V + KL++WG G LG G P +
Sbjct: 245 GVWHTAAVVEVIISQSNASSGKLFTWGDGDKYRLGHGDRSSKLKPTCI 292
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 109/260 (41%), Gaps = 33/260 (12%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ +V G + I ++G L+ +G+ G + S P V G + V+
Sbjct: 187 VSTVSCGTWHTALITSSGQLYTFGDGTF---GVLGHGNRASCSYPKEVESLKGLRTISVS 243
Query: 64 CGSEHVVALV----SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
CG H A+V S G+ ++WG + +LG GDR S+L+P I +
Sbjct: 244 CGVWHTAAVVEVIISQSNASSGK---LFTWGDGDKYRLGHGDRSSKLKPTCIPSLID--- 297
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ ++ CG T LT +T G GQLG+ P V+E
Sbjct: 298 YNFHKAACGHTLTIGLT--------TSGHIFTVGSSVYGQLGN-PNNDGRYPRLVEEQLG 348
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+V V CG +H +V+++AG+V++WG KG N L + D P L+
Sbjct: 349 GGGVVEVACGSYHVAVLTNAGEVYTWG--KG----ANGRLGHGDIADRKVPTLVEALRDR 402
Query: 240 GPKFQDPVQVACGAAHTVLV 259
K +VACG++ T +
Sbjct: 403 SVK-----RVACGSSFTAAI 417
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
G VV+VACGS HV L +AGE Y+WG NG+LG GD R P ++E
Sbjct: 349 GGGVVEVACGSYHVAVLTNAGEV--------YTWGKGANGRLGHGDIADRKVPTLVEALR 400
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
S V V CGS TA + K + M +S C
Sbjct: 401 DRS---VKRVACGSSFTAAICQHKWVSGMEQSQC 431
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 163 GTTQSALVPEQVKELPQYVYL-VS-VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
GTT LVP K L V L VS V CG+ H ++V+ +V++WG E C + L
Sbjct: 61 GTTTDVLVP---KPLESNVMLDVSYVACGVKHAALVTRQSEVFTWGEE-----C-SGRLG 111
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLG 278
+ P L+ + +ACG HT VT G L++WG G +G+LG
Sbjct: 112 HGTGTNVFQPRLVESLSICNVEL-----IACGEFHTCAVTATG-DLYTWGDGTHNAGLLG 165
Query: 279 TGKTIDFFAPAIVLWP 294
G + + P V P
Sbjct: 166 HGSNVSHWIPKRVSGP 181
>gi|330802866|ref|XP_003289433.1| hypothetical protein DICPUDRAFT_153832 [Dictyostelium purpureum]
gi|325080475|gb|EGC34029.1| hypothetical protein DICPUDRAFT_153832 [Dictyostelium purpureum]
Length = 1719
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 37/241 (15%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
++K++C + A+ G Y+WG +NG+LG GD + PK + + +
Sbjct: 305 IIKLSCSTNRSAAISKLG--------YLYTWGRGDNGRLGHGDSLMQSTPKQVMSLH--- 353
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-TQSALVPEQVKEL 177
+ +++ G H+ LT R E W G GENGQLGHGT T + P+Q++
Sbjct: 354 GHTIVDMSLGGGHSMALTKRG------EVFSW--GRGENGQLGHGTFTSQQMTPKQIQAF 405
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
V + G +H+ + + G +++WG L ++SL + GD SP+LI
Sbjct: 406 QNKTIKV-ISAGGYHSIAIDTNGSMFAWGRGDYGVLGVSSSL--DSLGDINSPVLIKSLN 462
Query: 238 PH----------GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
G +F + V+ G H V T++G L+SWG G LG +
Sbjct: 463 NSNGSNNSNSSAGERF---INVSSGFQHNVAQTENG-DLYSWGCGSGNRLGLANEENQLI 518
Query: 288 P 288
P
Sbjct: 519 P 519
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 136/312 (43%), Gaps = 56/312 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGH---TV 59
++ + G + + I + G L+ WG+ L G +L S P V F V
Sbjct: 162 KVVFISTGAIHTSIITDKGHLYTWGDGLL---GKLGHGTLESYSEPRLVEFFETKPSLRV 218
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL--RPKIIETFNQD 117
V VA G +H VAL G YS+G N++ QLGLG+ S P+++ TF
Sbjct: 219 VSVANGGKHTVALTVCGN--------VYSFGGNDSCQLGLGNISSSYYSTPQLV-TFQSP 269
Query: 118 SPWAVYE-----VTCGSFHTALLTHRKRPNDMLESMC------------------WTFGL 154
+ + S T +++ ++ ++ + +T+G
Sbjct: 270 QSLSNSNSSSPIIMSNSTSTLFNKQQQQSSNKIDRIIKLSCSTNRSAAISKLGYLYTWGR 329
Query: 155 GENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLC 214
G+NG+LGHG + P+QV L + +V + G H+ ++ G+V+SWG + G
Sbjct: 330 GDNGRLGHGDSLMQSTPKQVMSLHGHT-IVDMSLGGGHSMALTKRGEVFSWGRGEN-GQL 387
Query: 215 PNASLTRNEAGDAISPILISGNGPHGPKFQDPV--QVACGAAHTVLVTDDGYKLWSWGRG 272
+ + T + ++P I FQ+ ++ G H++ + +G +++WGRG
Sbjct: 388 GHGTFTSQQ----MTPKQIQA-------FQNKTIKVISAGGYHSIAIDTNG-SMFAWGRG 435
Query: 273 RSGVLGTGKTID 284
GVLG ++D
Sbjct: 436 DYGVLGVSSSLD 447
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 115/278 (41%), Gaps = 54/278 (19%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTV 59
+ +I + S AI G L+ WG D+ G G SL+ S TP V HGHT+
Sbjct: 302 IDRIIKLSCSTNRSAAISKLGYLYTWGRG---DNGRLGHGDSLMQS-TPKQVMSLHGHTI 357
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES-RLRPKIIETFNQDS 118
V ++ G H +AL GE +SWG NGQLG G S ++ PK I+ F +
Sbjct: 358 VDMSLGGGHSMALTKRGE--------VFSWGRGENGQLGHGTFTSQQMTPKQIQAFQNKT 409
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL----VPEQV 174
+ ++ G +H+ + D SM + +G G+ G LG ++ +L P +
Sbjct: 410 ---IKVISAGGYHSIAI-------DTNGSM-FAWGRGDYGVLGVSSSLDSLGDINSPVLI 458
Query: 175 KELPQYVY-----------LVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTR 221
K L ++V G H + GD++SWG G LGL
Sbjct: 459 KSLNNSNGSNNSNSSAGERFINVSSGFQHNVAQTENGDLYSWGCGSGNRLGLA------- 511
Query: 222 NEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLV 259
NE I L + P F +CG T++V
Sbjct: 512 NEENQLIPKKLNDRSNNSKPAF-----FSCGEIITIIV 544
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 100/265 (37%), Gaps = 68/265 (25%)
Query: 53 DFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE 112
DF VV ++ G+ H + G Y+WG G+LG G ES P+++E
Sbjct: 157 DFLKEKVVFISTGAIHTSIITDKGH--------LYTWGDGLLGKLGHGTLESYSEPRLVE 208
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC---WTFGLGENGQLGHG------ 163
F V V G HT LT +C ++FG ++ QLG G
Sbjct: 209 FFETKPSLRVVSVANGGKHTVALT-----------VCGNVYSFGGNDSCQLGLGNISSSY 257
Query: 164 ----------------------------TTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
+T + +Q + + ++ + C ++
Sbjct: 258 YSTPQLVTFQSPQSLSNSNSSSPIIMSNSTSTLFNKQQQQSSNKIDRIIKLSCSTNRSAA 317
Query: 196 VSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 255
+S G +++WG L SL ++ +S HG V ++ G H
Sbjct: 318 ISKLGYLYTWGRGDNGRLGHGDSLMQSTPKQVMS--------LHGHTI---VDMSLGGGH 366
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTG 280
++ +T G +++SWGRG +G LG G
Sbjct: 367 SMALTKRG-EVFSWGRGENGQLGHG 390
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 35/194 (18%)
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK--ELPQYVY 182
++ G+ HT+++T + +T+G G G+LGHGT +S P V+ E +
Sbjct: 166 ISTGAIHTSIITDKGH--------LYTWGDGLLGKLGHGTLESYSEPRLVEFFETKPSLR 217
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG----MEKGLGLCPNASLTRNE--------------- 223
+VSV G HT ++ G+V+S+G + GLG ++ + +
Sbjct: 218 VVSVANGGKHTVALTVCGNVYSFGGNDSCQLGLGNISSSYYSTPQLVTFQSPQSLSNSNS 277
Query: 224 -----AGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
++ S + K ++++C + ++ GY L++WGRG +G LG
Sbjct: 278 SSPIIMSNSTSTLFNKQQQQSSNKIDRIIKLSCSTNRSAAISKLGY-LYTWGRGDNGRLG 336
Query: 279 TGKTIDFFAPAIVL 292
G ++ P V+
Sbjct: 337 HGDSLMQSTPKQVM 350
>gi|218189796|gb|EEC72223.1| hypothetical protein OsI_05329 [Oryza sativa Indica Group]
gi|222619928|gb|EEE56060.1| hypothetical protein OsJ_04872 [Oryza sativa Japonica Group]
Length = 910
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 124/292 (42%), Gaps = 48/292 (16%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSS------FTPSPVWDFHGHTVVKVACGSEHVVA 71
D++G +++WG +S G ++V S P P+ V CG +H
Sbjct: 32 DSSGDVYVWGEVICDNSVRTGSDTVVRSTVRTDVLRPKPLESNLVLDAYHVDCGVKHSAL 91
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
+ GE + +WG + G+LG G RE + P++IE+ + V V CG FH
Sbjct: 92 VTKNGEVF--------TWGEESGGRLGHGSREDSIHPRLIESL---AVCNVDIVACGEFH 140
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF 191
T +T E W G G LGHG S +P+++ + + + V CG +
Sbjct: 141 TCAVT------TAGELYTWGDGTHNVGLLGHGKDVSHWIPKRIAGALEGLAVAYVSCGTW 194
Query: 192 HTSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV 249
HT+++++ G ++++ G LG S++ + +++S + + V
Sbjct: 195 HTALITTMGQLFTFGDGTFGVLGHGNRESISCPKEVESLSGL-------------KTISV 241
Query: 250 ACGAAHT-----VLVTDDGY-----KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
ACG HT V+VT KL++WG G LG G P V
Sbjct: 242 ACGVWHTAAIVEVIVTQSSSSISSGKLFTWGDGDKHRLGHGDKEPRLKPTCV 293
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 142/336 (42%), Gaps = 72/336 (21%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
V G S + G ++ WG G S S P + V VACG
Sbjct: 82 VDCGVKHSALVTKNGEVFTWGE---ESGGRLGHGSREDSIHPRLIESLAVCNVDIVACGE 138
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
H A+ +AGE Y D G +N G LG G S PK I + AV V+
Sbjct: 139 FHTCAVTTAGELYTWGD------GTHNVGLLGHGKDVSHWIPKRIAGALEG--LAVAYVS 190
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSV 186
CG++HTAL+T +TFG G G LGHG +S P++V+ L + +SV
Sbjct: 191 CGTWHTALIT--------TMGQLFTFGDGTFGVLGHGNRESISCPKEVESLSG-LKTISV 241
Query: 187 DCGLFHTSVV-----------SSAGDVWSWGM---------EKGLGLCPN--ASLT---- 220
CG++HT+ + S+G +++WG +K L P ASL
Sbjct: 242 ACGVWHTAAIVEVIVTQSSSSISSGKLFTWGDGDKHRLGHGDKEPRLKPTCVASLIDYDF 301
Query: 221 -RNEAGDAIS-------PILISGNGPHG----PKF-------------QDPVQVACGAAH 255
R G +++ +L GN +G P+ ++ VQVACG+ H
Sbjct: 302 HRIACGHSLTVGLTTSGKVLSMGNTVYGQLGNPRSDGKIPCLVEEIVGENVVQVACGSYH 361
Query: 256 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++T ++++WG+G +G LG G D P +V
Sbjct: 362 VAVLTIKS-EVFTWGKGANGRLGHGDIEDRKIPTLV 396
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 88/218 (40%), Gaps = 33/218 (15%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLV---CYSWGANNNGQLGLGDRES 104
P V G + VACG H A+V T + ++WG + +LG GD+E
Sbjct: 227 PKEVESLSGLKTISVACGVWHTAAIVEVIVTQSSSSISSGKLFTWGDGDKHRLGHGDKEP 286
Query: 105 RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
RL+P + + + + + CG T LT + G GQLG+
Sbjct: 287 RLKPTCVASLID---YDFHRIACGHSLTVGLT--------TSGKVLSMGNTVYGQLGNPR 335
Query: 165 TQS---ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTR 221
+ LV E V E +V V CG +H +V++ +V++WG KG N L
Sbjct: 336 SDGKIPCLVEEIVGE-----NVVQVACGSYHVAVLTIKSEVFTWG--KG----ANGRLGH 384
Query: 222 NEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLV 259
+ D P L+ + + +ACGA T +
Sbjct: 385 GDIEDRKIPTLVE-----ALRDRSVRHIACGANFTAAI 417
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P V + G VV+VACGS HV L T K E ++WG NG+LG GD E R
Sbjct: 341 PCLVEEIVGENVVQVACGSYHVAVL-----TIKSE---VFTWGKGANGRLGHGDIEDRKI 392
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
P ++E S V + CG+ TA + K + +S C
Sbjct: 393 PTLVEALRDRS---VRHIACGANFTAAICQHKWVSGAEQSQC 431
>gi|410903564|ref|XP_003965263.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Takifugu
rubripes]
Length = 3883
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 129/294 (43%), Gaps = 72/294 (24%)
Query: 46 FTPSPVWDFHGHTVVKV--ACGSE-HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
+ P+ + F G+ V ++ +CGS+ H +AL GE + SWG + G+LG G+
Sbjct: 3091 YVPTIISAFQGYVVTQLVTSCGSDGHSMALTETGEVF--------SWGDGDFGKLGHGNN 3142
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLT-----------------HRKRPNDML 145
E + RPK IE + V ++ CG H+A++T R N ML
Sbjct: 3143 ERQRRPKQIEALQGED---VVQLACGFRHSAVVTADGKLFTFGSGESGRLGQRSTSNKML 3199
Query: 146 -------------ESMC---------------WTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ C W FG G+ G+LG G++ + P++V++L
Sbjct: 3200 PERVAALEGYHVGQVSCGLNHTLVLSLDGMAVWAFGDGDYGKLGAGSSTAKYYPQKVEQL 3259
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ V CG + VV+ G V+++G E+ +GL P+ S+ +N + + P L
Sbjct: 3260 CNK-GMKKVCCGAQFSVVVACDGHVYTFGQERLIGL-PD-SMLKNRSNPQVVPSL----- 3311
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G +D +A G H + ++ G +++WG G LG G P ++
Sbjct: 3312 -EGLFIED---IAVGCEHVLALSSTG-DVYAWGCNSEGQLGLGHCNPVKEPTLI 3360
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 121/282 (42%), Gaps = 36/282 (12%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ ++ S K +LAI G ++ WG+ G S + VV
Sbjct: 466 IKKVSSSKGSDGHTLAITVDGEVFSWGDGEY--GKLGHGNSATQKYPKIIQGPLFSKIVV 523
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+ G H A+ GE Y +WG + G+LG D +SR P +++ +
Sbjct: 524 SASAGYRHSAAVTKDGELY--------TWGEGDFGRLGHSDSQSRNMPTLVKDIS----- 570
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V +V CGS HT + R W+FG G+NG+LGHG T P+ ++ L +
Sbjct: 571 GVGQVACGSSHTIAVAQDGR-------TVWSFGGGDNGKLGHGDTNRVYRPKVIEALHGF 623
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ + V G + ++SAG V++WG LG C ++ T ++ P +
Sbjct: 624 I-IRKVCAGSQSSLALTSAGQVFAWGCGSCLG-CGSSETT------SLRPRFV-----ED 670
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+ ++CG +H + ++ + ++++WG G G G T
Sbjct: 671 LSITKIIDISCGDSHCLALSHEN-EVYAWGNNTMGQCGQGHT 711
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 27/205 (13%)
Query: 90 GANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
G + G+LGLGD ++ PK + + V HT +T ++
Sbjct: 437 GKGSYGRLGLGDSNNQSLPKKLVLEPHRNIKKVSSSKGSDGHTLAIT--------VDGEV 488
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+++G GE G+LGHG + + P+ ++ +VS G H++ V+ G++++WG
Sbjct: 489 FSWGDGEYGKLGHGNSATQKYPKIIQGPLFSKIVVSASAGYRHSAAVTKDGELYTWGEGD 548
Query: 210 GLGLCPNASLTRNEAGDAISPIL---ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
L + S +RN P L ISG G QVACG++HT+ V DG +
Sbjct: 549 FGRLGHSDSQSRN------MPTLVKDISGVG----------QVACGSSHTIAVAQDGRTV 592
Query: 267 WSWGRGRSGVLGTGKTIDFFAPAIV 291
WS+G G +G LG G T + P ++
Sbjct: 593 WSFGGGDNGKLGHGDTNRVYRPKVI 617
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 118/271 (43%), Gaps = 38/271 (14%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
+++WGN + G V + PS +V CG + S G
Sbjct: 3022 VYLWGNGRYGQLAGTGTNLTVPTLAPSL------SQTQQVVCGQNCSFLIQSNG------ 3069
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF-HTALLTHRKRP 141
V + G G+LG G+ + P II F Q +CGS H+ LT
Sbjct: 3070 --VVTAVGEGQYGRLGQGNSDDLYVPTIISAF-QGYVVTQLVTSCGSDGHSMALTETGE- 3125
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+++G G+ G+LGHG + P+Q++ L Q +V + CG H++VV++ G
Sbjct: 3126 -------VFSWGDGDFGKLGHGNNERQRRPKQIEAL-QGEDVVQLACGFRHSAVVTADGK 3177
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISG-NGPHGPKFQDPVQVACGAAHTVLVT 260
++++G + + L + + + P ++ G H QV+CG HT++++
Sbjct: 3178 LFTFGSGE------SGRLGQRSTSNKMLPERVAALEGYHVG------QVSCGLNHTLVLS 3225
Query: 261 DDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
DG +W++G G G LG G + + P V
Sbjct: 3226 LDGMAVWAFGDGDYGKLGAGSSTAKYYPQKV 3256
>gi|428177897|gb|EKX46775.1| hypothetical protein GUITHDRAFT_40435, partial [Guillardia theta
CCMP2712]
Length = 312
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 112/268 (41%), Gaps = 34/268 (12%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80
G+++ WG L S G + S P V V VA G H A++ G+ +
Sbjct: 79 GSVYSWG---LGSSGRLGLGNFKSVPQPCKVSGLGEERCVSVAAGYYHSFAVMEGGKLF- 134
Query: 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKR 140
+WG GQLG G ES P +E W V G +H+ +T
Sbjct: 135 -------AWGNGTCGQLGTGKFESCCEPVQVEEPGNGQRWRA--VRGGEYHSLGMTD--- 182
Query: 141 PNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAG 200
+ S+ W++GL +GQLGHG + P+ + EL + CG +S+
Sbjct: 183 ----VGSL-WSWGLNNDGQLGHGDEERCGRPKGISELVG-TKISCFSCGPNFNVAISNGS 236
Query: 201 DVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT 260
V+SWG + L + + I L SG+ HGP + V+CG H VL
Sbjct: 237 QVFSWGNNR------YGQLGHGDKVEQIEETLRSGS--HGPLV---LSVSCGGRH-VLGL 284
Query: 261 DDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
D ++W+WG SG LG G I AP
Sbjct: 285 DRKGRIWAWGCNESGCLGIGDNIPRLAP 312
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 102/229 (44%), Gaps = 37/229 (16%)
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG--DRESRLRPKIIET 113
GH VV+VA G +H + L AG L C G N+ QLG G RE+ P+ + T
Sbjct: 5 GHHVVQVAAGGDHTLFLTDAGRV-----LAC---GRNDCYQLGDGYEGREAGPEPQQVST 56
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
V E+ CG H + L+ +++GLG +G+LG G +S P +
Sbjct: 57 LRWKR---VVEMACGDAHNLV--------RCLDGSVYSWGLGSSGRLGLGNFKSVPQPCK 105
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
V L + VSV G +H+ V G +++WG G C + E+ P+ +
Sbjct: 106 VSGLGEE-RCVSVAAGYYHSFAVMEGGKLFAWGN----GTCGQLGTGKFES--CCEPVQV 158
Query: 234 S--GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
GNG Q V G H++ +TD G LWSWG G LG G
Sbjct: 159 EEPGNG------QRWRAVRGGEYHSLGMTDVG-SLWSWGLNNDGQLGHG 200
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 86/206 (41%), Gaps = 26/206 (12%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD-FHGHTVVKVAC 64
SV AG S A+ G L+ WGN T G F S P V + +G V
Sbjct: 116 SVAAGYYHSFAVMEGGKLFAWGNGTCGQLGT-GKFE--SCCEPVQVEEPGNGQRWRAVRG 172
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G H + + G + SWG NN+GQLG GD E RPK I +
Sbjct: 173 GEYHSLGMTDVGSLW--------SWGLNNDGQLGHGDEERCGRPKGISELVGTK---ISC 221
Query: 125 VTCG-SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
+CG +F+ A+ S +++G GQLGHG + + E ++ +
Sbjct: 222 FSCGPNFNVAISN---------GSQVFSWGNNRYGQLGHG-DKVEQIEETLRSGSHGPLV 271
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEK 209
+SV CG H + G +W+WG +
Sbjct: 272 LSVSCGGRHVLGLDRKGRIWAWGCNE 297
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 75/180 (41%), Gaps = 19/180 (10%)
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V +V G HT LT R + C+ G G G+ ++ P+QV L ++
Sbjct: 8 VVQVAAGGDHTLFLTDAGRVLACGRNDCYQLGDGYEGR------EAGPEPQQVSTL-RWK 60
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+V + CG H V G V+SWG+ + L P +SG G
Sbjct: 61 RVVEMACGDAHNLVRCLDGSVYSWGLGS------SGRLGLGNFKSVPQPCKVSGLGE--- 111
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFK 301
+ V VA G H+ V + G KL++WG G G LGTGK P V P + ++
Sbjct: 112 --ERCVSVAAGYYHSFAVMEGG-KLFAWGNGTCGQLGTGKFESCCEPVQVEEPGNGQRWR 168
>gi|146298949|ref|YP_001193540.1| regulator of chromosome condensation, RCC1 [Flavobacterium
johnsoniae UW101]
gi|146153367|gb|ABQ04221.1| regulator of chromosome condensation, RCC1 [Flavobacterium
johnsoniae UW101]
Length = 1679
Score = 81.3 bits (199), Expect = 1e-12, Method: Composition-based stats.
Identities = 73/286 (25%), Positives = 114/286 (39%), Gaps = 48/286 (16%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPD--SSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ AG ++A+ N G LW WGN +ST ++ + + W A
Sbjct: 23 TAAAGYSHTVAVRNDGTLWTWGNNDEGQLGNSTPAAINIPTKMGTANNWK-------TAA 75
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQDSPWAV 122
G H VAL + G ++WG GQLG G+ + P+ I T N W
Sbjct: 76 AGWGHTVALKTDG--------TLWAWGYGRLGQLGNGNYNTNFNLPQQIGTEND---WQT 124
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ G HT L + + W +G +GQLG+GT+ P ++ +
Sbjct: 125 --IAAGHGHTVALKN--------DGTLWAWGNNFSGQLGNGTSFDRNTPTKIGSDSNW-- 172
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+++ G +T + G +W+WG + G + + T N I
Sbjct: 173 -LAISAGGLYTIALKKDGTLWAWG-KNTYGTLGDGTTTNNRVPKQIG------------T 218
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
D +A G+ HT+ + +DG LW WG+ G LG TID P
Sbjct: 219 DTDWKTIAAGSDHTIAIKNDG-SLWIWGKNTYGALGDNTTIDKIVP 263
Score = 80.5 bits (197), Expect = 1e-12, Method: Composition-based stats.
Identities = 78/292 (26%), Positives = 123/292 (42%), Gaps = 55/292 (18%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF---TPSPVWDFHGHTVVKV 62
++ AG ++A+ N G LW WGN + G +SF TP+ +
Sbjct: 124 TIAAGHGHTVALKNDGTLWAWGN------NFSGQLGNGTSFDRNTPTKI----------- 166
Query: 63 ACGSEHVVALVSAGETYK---GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
GS+ +SAG Y +D ++WG N G LG G + PK I T D+
Sbjct: 167 --GSDSNWLAISAGGLYTIALKKDGTLWAWGKNTYGTLGDGTTTNNRVPKQIGT---DTD 221
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
W + GS HT + + + W +G G LG TT +VP ++
Sbjct: 222 WKT--IAAGSDHTIAIKN--------DGSLWIWGKNTYGALGDNTTIDKIVPTKIGTDTD 271
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ S + G+ +T + + G +W+WG G+ N S +++ P+ I
Sbjct: 272 WK---SAEGGVDYTVAIKTDGTLWAWGYNAD-GVFGNGSKI-----NSLIPVQIGTE--- 319
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ V+ G+ HTV V D LWSWG G LG G +I+ P ++
Sbjct: 320 ----KNWQMVSGGSVHTVAVKTD-ESLWSWGNNSYGQLGDGTSIEKNIPTLL 366
>gi|66809941|ref|XP_638694.1| inositol 5-phosphatase [Dictyostelium discoideum AX4]
gi|60467249|gb|EAL65282.1| inositol 5-phosphatase [Dictyostelium discoideum AX4]
Length = 1800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 50/238 (21%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD--------- 53
+ +KAG +S AI AG L+ WG+ + + SFTP+ + +
Sbjct: 127 NVIKIKAGNNVSAAITEAGDLYCWGSSAYGQLGNGKMNAKLHSFTPTTILNPLIPDAEKD 186
Query: 54 ---FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKI 110
+ + G++H +A+ + G +SWG+N GQLGLG ++L P
Sbjct: 187 DPIYQNLQYTNICFGAQHTIAISTTG--------AIFSWGSNQYGQLGLGHCNAKLVPVP 238
Query: 111 IETFNQDSPWA----------------------VYEVTCGSFHTALLTHRKRPNDMLESM 148
I N A V ++ CG+FH+ALLT LE
Sbjct: 239 IHLDNSFERRAGHINSLGEIVTTDFTAKTIHRIVVDIACGNFHSALLT--------LEGD 290
Query: 149 CWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ +G + GQLG G + VP+ VK ++V + + G HT +++ DV+++G
Sbjct: 291 LFLWGSNQYGQLGQGDSLDQSVPKTVKGSLEFVKINRMALGNNHTILLTKEQDVFTFG 348
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 77/187 (41%), Gaps = 46/187 (24%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---------------CPLP---DSSTEGGFSLVS 44
Q ++ G ++AI GA++ WG+ P+P D+S E ++
Sbjct: 194 QYTNICFGAQHTIAISTTGAIFSWGSNQYGQLGLGHCNAKLVPVPIHLDNSFERRAGHIN 253
Query: 45 SFTPSPVWDFHGHT----VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG 100
S DF T VV +ACG+ H L G+ + WG+N GQLG G
Sbjct: 254 SLGEIVTTDFTAKTIHRIVVDIACGNFHSALLTLEGD--------LFLWGSNQYGQLGQG 305
Query: 101 DRESRLRPKIIE---TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN 157
D + PK ++ F + + G+ HT LLT E +TFG E
Sbjct: 306 DSLDQSVPKTVKGSLEF-----VKINRMALGNNHTILLTK--------EQDVFTFGSNEF 352
Query: 158 GQLGHGT 164
QLGHG+
Sbjct: 353 YQLGHGS 359
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 113/278 (40%), Gaps = 67/278 (24%)
Query: 41 SLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG 100
++V S P PV V+K+ G+ A+ AG DL C WG++ GQLG G
Sbjct: 110 NVVDSAVPLPVDTLSKFNVIKIKAGNNVSAAITEAG------DLYC--WGSSAYGQLGNG 161
Query: 101 DRESRLRP--------KIIETFNQDSPWAVYE------VTCGSFHTALLTHRKRPNDMLE 146
++L +I +D P +Y+ + G+ HT ++
Sbjct: 162 KMNAKLHSFTPTTILNPLIPDAEKDDP--IYQNLQYTNICFGAQHTIAIS--------TT 211
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPE-------------QVKELPQYV-----------Y 182
+++G + GQLG G + LVP + L + V
Sbjct: 212 GAIFSWGSNQYGQLGLGHCNAKLVPVPIHLDNSFERRAGHINSLGEIVTTDFTAKTIHRI 271
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V + CG FH+++++ GD++ WG + L + ++ D P + G +
Sbjct: 272 VVDIACGNFHSALLTLEGDLFLWGSNQY------GQLGQGDSLDQSVPKTVKG----SLE 321
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
F ++A G HT+L+T + ++++G LG G
Sbjct: 322 FVKINRMALGNNHTILLTKE-QDVFTFGSNEFYQLGHG 358
Score = 38.1 bits (87), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 15/126 (11%)
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+VSV CG HT +++S ++S G + L D+ P+ + K
Sbjct: 76 VVSVSCGFNHTLLLTSEYKIFSMGFNQ------TGQLGIENVVDSAVPLPVDTLS----K 125
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK---TIDFFAPAIVLWPPLTEE 299
F + +++ G + +T+ G L+ WG G LG GK + F P +L P + +
Sbjct: 126 F-NVIKIKAGNNVSAAITEAG-DLYCWGSSAYGQLGNGKMNAKLHSFTPTTILNPLIPDA 183
Query: 300 FKQDEL 305
K D +
Sbjct: 184 EKDDPI 189
>gi|66358878|ref|XP_626617.1| RCC1 domain containing protein [Cryptosporidium parvum Iowa II]
gi|46228329|gb|EAK89228.1| RCC1 domain containing protein [Cryptosporidium parvum Iowa II]
Length = 1878
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 103/241 (42%), Gaps = 38/241 (15%)
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETF 114
GH+ + A H + A KG+ Y+WG N N LGLG P + F
Sbjct: 36 GHSFTRAASSLNHY--FIVAKLKNKGQ---LYAWGVNTNNVLGLGIENGEFNFPMKVNFF 90
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
S V++V+CG HTA+L + +T GLG+ G+LG+ + E
Sbjct: 91 ---SALEVFQVSCGYSHTAVLV---KGISEASGRVYTMGLGDRGRLGYTRGYTEFGNEHD 144
Query: 175 K---------------ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASL 219
K P + + CG H+ +S +G V++WG+ + L
Sbjct: 145 KNDLNESWYTPVPCIVNFPFNAKISRISCGANHSLALSDSGLVFAWGIGQ------YGCL 198
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
E D SP+ I GP + + +A GA H++ +DG ++++WG +G LGT
Sbjct: 199 GTGELNDVYSPVKIEA----GPTDKKVLHIAAGARHSLCCNEDG-QVFAWGSNSNGRLGT 253
Query: 280 G 280
G
Sbjct: 254 G 254
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 132/309 (42%), Gaps = 67/309 (21%)
Query: 10 GGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHV 69
G +S + G L+ + S+E G SLV S PS W +V ++ACG+ H
Sbjct: 449 GNKVSYEPKSEGGLFSVNRIYKSNGSSEIG-SLVGSQIPS--W-----SVRQIACGTSHT 500
Query: 70 VALVSAGETYKGEDLVCYSWGANNNGQLGLGDR----------ESRLRPKIIETFNQDSP 119
+ LV G ++WG N GQLG+ R ES L F++
Sbjct: 501 LLLVYGG--------TIFAWGDNKYGQLGVDTRRRKSQNGDKNESFLNEPTEIKFSE--- 549
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V CGS+H+ ++ C+++G G+ GQLG G ++ P + L
Sbjct: 550 -PIRRVACGSWHSLCCD--------IKGNCFSWGRGDRGQLGTGAIRNLYEPAGIVTLKN 600
Query: 180 YVYLVSVDCG-LFHTSVVS------------SAGDVWSWGMEKGLGLCPNASLTRNEAGD 226
++ V G L+ +V+ ++GD+W WG + L + GD
Sbjct: 601 ---VIEVAGGELYSACIVACITTGNKDLDTINSGDLWIWG---------DGDLGKLGLGD 648
Query: 227 AISPILISGNGPHGPKFQDP-VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
+ I+ P P ++VA G++HT+++T G +L +WG G G LGT T
Sbjct: 649 HVLKSCIA--APRHLNLGTPIIKVALGSSHTLVLTASG-ELITWGAGYYGRLGTNSTKSH 705
Query: 286 FAPAIVLWP 294
P + +P
Sbjct: 706 SNPIKIRFP 714
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 96/210 (45%), Gaps = 24/210 (11%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I V G SL D G + WG D G ++ + + P+ + V++VA
Sbjct: 551 IRRVACGSWHSLCCDIKGNCFSWGR---GDRGQLGTGAIRNLYEPAGIVTLKN--VIEVA 605
Query: 64 CG---SEHVVALVSAG----ETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
G S +VA ++ G +T DL + WG + G+LGLGD + N
Sbjct: 606 GGELYSACIVACITTGNKDLDTINSGDL--WIWGDGDLGKLGLGDHVLKSCIAAPRHLNL 663
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+P + +V GS HT +LT E + W G G G+LG +T+S P +++
Sbjct: 664 GTP--IIKVALGSSHTLVLTASG------ELITW--GAGYYGRLGTNSTKSHSNPIKIRF 713
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ V +V + G +H+ VSS GD+W WG
Sbjct: 714 PIKGVQIVDIAVGSYHSMAVSSLGDLWVWG 743
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 101/214 (47%), Gaps = 33/214 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT--- 58
++I + G SLA+ ++G ++ WG + G L ++P + G T
Sbjct: 166 AKISRISCGANHSLALSDSGLVFAWG---IGQYGCLGTGELNDVYSPVKIE--AGPTDKK 220
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES-RLRPKIIETFNQD 117
V+ +A G+ H + ED ++WG+N+NG+LG G + P I++ +Q
Sbjct: 221 VLHIAAGARHSLCC--------NEDGQVFAWGSNSNGRLGTGGSYGMKTVPTQIKSLSQ- 271
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESM--CWTFGLGENGQLGHGTTQSALVPEQVK 175
+H L+ + + ++S +T+G G +G+LGHGT +P +++
Sbjct: 272 ------------YHITLVAAGESHSGCIDSFGYIYTWGNGGSGKLGHGTQSDCNIPRRIE 319
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+ + V + G F++ +S +G+V+ WG ++
Sbjct: 320 GISSLPF-VQLTLGAFNSMALSQSGEVYIWGAKQ 352
>gi|149043904|gb|EDL97355.1| rCG61079, isoform CRA_d [Rattus norvegicus]
Length = 245
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 112/261 (42%), Gaps = 43/261 (16%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 82
+ WGN GG P F V V CG H V ++ G Y
Sbjct: 1 MLCWGNASYGQLGL-GGIDEEIVLEPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVY--- 56
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPN 142
+ G N+ GQLG +SR +P+ + + + + V+CG HT L N
Sbjct: 57 -----TCGCNDLGQLG--HEKSRKKPEQVVALDAQN---IVAVSCGEAHTLAL------N 100
Query: 143 DMLESMCWTFGLGENGQLG-HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
D + W GL +GQLG G+ + VP +K L + +V V CG +H+ +S A +
Sbjct: 101 DKGQVYAW--GLDSDGQLGLQGSEECIRVPRNIKSLSD-IQIVQVACGYYHSLALSKASE 157
Query: 202 VWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTV 257
V+ WG K GLG+ E SP LI G F +QVA G AH+
Sbjct: 158 VFCWGQNKYGQLGLGI---------ECQKQTSPQLI--KSLLGIPF---MQVAAGGAHSF 203
Query: 258 LVTDDGYKLWSWGRGRSGVLG 278
++T G ++ WGR + G LG
Sbjct: 204 VLTLSG-AIFGWGRNKFGQLG 223
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 43/115 (37%), Gaps = 10/115 (8%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G SLA+ A ++ WG G +P + G ++V
Sbjct: 138 QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGL--GIECQKQTSPQLIKSLLGIPFMQV 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
A G H L +G + WG N GQLGL D R ++ N+D
Sbjct: 196 AAGGAHSFVLTLSGAIF--------GWGRNKFGQLGLNDENGRFSLELSAFLNED 242
>gi|449476139|ref|XP_004154652.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101226798 [Cucumis sativus]
Length = 1103
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 129/290 (44%), Gaps = 30/290 (10%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTVVKVACG 65
V G + A+ +G L+ WG+ +S G VS + P V G + ++CG
Sbjct: 365 VACGEYHTCAVTLSGDLYTWGDGTY-NSGLLGHGKDVSHWVPKRVTGPLQGLHISSISCG 423
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ +++G G LG GDR+S P+ +E+
Sbjct: 424 PWHTALVTSAGK--------LFTFGDGTFGVLGHGDRDSISIPREVESLKG---LRTVRA 472
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ N+ +T+G G+ G+LGHG ++ LVP V L +
Sbjct: 473 ACGVWHTAAVVEVIIGNPNSNNNSSGKLFTWGDGDKGRLGHGDKEARLVPTCVAALVEPN 532
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG T ++++G +++ G P N D P + G
Sbjct: 533 F-CQVACGHSLTVALTNSGHIYTMG-------SPVYGQLGNPQADGKLPARVEGK--LSK 582
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F + ++ACGA H ++T ++++WG+G +G LG G T D P +V
Sbjct: 583 SFVE--ELACGAYHVAVLTSR-TEVYTWGKGANGRLGHGSTDDRNTPTLV 629
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 108/247 (43%), Gaps = 45/247 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +ACG+ H + GE + SWG G+LG G PK+I+ S
Sbjct: 310 VQNIACGNRHAALVTKQGEVF--------SWGEEYGGRLGHGGDSDAHHPKLIDAL---S 358
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG--ENGQLGHGTTQSALVPEQVKE 176
+ V CG +HT +T L +T+G G +G LGHG S VP++V
Sbjct: 359 NLNIELVACGEYHTCAVT--------LSGDLYTWGDGTYNSGLLGHGKDVSHWVPKRVTG 410
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS-PILISG 235
Q +++ S+ CG +HT++V+SAG ++++G + G+ + D+IS P +
Sbjct: 411 PLQGLHISSISCGPWHTALVTSAGKLFTFG-DGTFGVLGHGDR------DSISIPREV-- 461
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGKTID 284
K V+ ACG HT V + KL++WG G G LG G
Sbjct: 462 ---ESLKGLRTVRAACGVWHTAAVVEVIIGNPNSNNNSSGKLFTWGDGDKGRLGHGDKEA 518
Query: 285 FFAPAIV 291
P V
Sbjct: 519 RLVPTCV 525
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 109/270 (40%), Gaps = 48/270 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
I S+ G + + +AG L+ +G +G F ++ S P V G
Sbjct: 416 HISSISCGPWHTALVTSAGKLFTFG---------DGTFGVLGHGDRDSISIPREVESLKG 466
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLV-------CYSWGANNNGQLGLGDRESRLRPK 109
V+ ACG H A+V E G ++WG + G+LG GD+E+RL P
Sbjct: 467 LRTVRAACGVWHTAAVV---EVIIGNPNSNNNSSGKLFTWGDGDKGRLGHGDKEARLVPT 523
Query: 110 IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
+ + + +V CG T LT+ +T G GQLG+ L
Sbjct: 524 CVAALVEPN---FCQVACGHSLTVALTN--------SGHIYTMGSPVYGQLGNPQADGKL 572
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
P +V+ ++ + CG +H +V++S +V++WG KG N L D +
Sbjct: 573 -PARVEGKLSKSFVEELACGAYHVAVLTSRTEVYTWG--KG----ANGRLGHGSTDDRNT 625
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLV 259
P L+ K + +ACG T +
Sbjct: 626 PTLV-----EALKDKQVKSIACGTNFTAAI 650
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 26/118 (22%)
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
++ CG H ++V+ G+V+SWG E G L GD+ + H PK
Sbjct: 312 NIACGNRHAALVTKQGEVFSWGEEYGGRL--------GHGGDSDA---------HHPKLI 354
Query: 245 DPVQ------VACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTGKTIDFFAPAIVLWP 294
D + VACG HT VT G L++WG G SG+LG GK + + P V P
Sbjct: 355 DALSNLNIELVACGEYHTCAVTLSG-DLYTWGDGTYNSGLLGHGKDVSHWVPKRVTGP 411
>gi|449442577|ref|XP_004139058.1| PREDICTED: uncharacterized protein LOC101219074 [Cucumis sativus]
Length = 1103
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 129/290 (44%), Gaps = 30/290 (10%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW-DFHGHTVVKVACG 65
V G + A+ +G L+ WG+ +S G VS + P V G + ++CG
Sbjct: 365 VACGEYHTCAVTLSGDLYTWGDGTY-NSGLLGHGKDVSHWVPKRVTGPLQGLHISSISCG 423
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ +++G G LG GDR+S P+ +E+
Sbjct: 424 PWHTALVTSAGK--------LFTFGDGTFGVLGHGDRDSISIPREVESLKG---LRTVRA 472
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ N+ +T+G G+ G+LGHG ++ LVP V L +
Sbjct: 473 ACGVWHTAAVVEVIIGNPNSNNNSSGKLFTWGDGDKGRLGHGDKEARLVPTCVAALVEPN 532
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG T ++++G +++ G P N D P + G
Sbjct: 533 F-CQVACGHSLTVALTNSGHIYTMG-------SPVYGQLGNPQADGKLPARVEGK--LSK 582
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F + ++ACGA H ++T ++++WG+G +G LG G T D P +V
Sbjct: 583 SFVE--ELACGAYHVAVLTSR-TEVYTWGKGANGRLGHGSTDDRNTPTLV 629
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 108/247 (43%), Gaps = 45/247 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +ACG+ H + GE + SWG G+LG G PK+I+ S
Sbjct: 310 VQNIACGNRHAALVTKQGEVF--------SWGEEYGGRLGHGGDSDAHHPKLIDAL---S 358
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG--ENGQLGHGTTQSALVPEQVKE 176
+ V CG +HT +T L +T+G G +G LGHG S VP++V
Sbjct: 359 NLNIELVACGEYHTCAVT--------LSGDLYTWGDGTYNSGLLGHGKDVSHWVPKRVTG 410
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS-PILISG 235
Q +++ S+ CG +HT++V+SAG ++++G + G+ + D+IS P +
Sbjct: 411 PLQGLHISSISCGPWHTALVTSAGKLFTFG-DGTFGVLGHGDR------DSISIPREV-- 461
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGKTID 284
K V+ ACG HT V + KL++WG G G LG G
Sbjct: 462 ---ESLKGLRTVRAACGVWHTAAVVEVIIGNPNSNNNSSGKLFTWGDGDKGRLGHGDKEA 518
Query: 285 FFAPAIV 291
P V
Sbjct: 519 RLVPTCV 525
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 109/270 (40%), Gaps = 48/270 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
I S+ G + + +AG L+ +G +G F ++ S P V G
Sbjct: 416 HISSISCGPWHTALVTSAGKLFTFG---------DGTFGVLGHGDRDSISIPREVESLKG 466
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLV-------CYSWGANNNGQLGLGDRESRLRPK 109
V+ ACG H A+V E G ++WG + G+LG GD+E+RL P
Sbjct: 467 LRTVRAACGVWHTAAVV---EVIIGNPNSNNNSSGKLFTWGDGDKGRLGHGDKEARLVPT 523
Query: 110 IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
+ + + +V CG T LT+ +T G GQLG+ L
Sbjct: 524 CVAALVEPN---FCQVACGHSLTVALTN--------SGHIYTMGSPVYGQLGNPQADGKL 572
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
P +V+ ++ + CG +H +V++S +V++WG KG N L D +
Sbjct: 573 -PARVEGKLSKSFVEELACGAYHVAVLTSRTEVYTWG--KG----ANGRLGHGSTDDRNT 625
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLV 259
P L+ K + +ACG T +
Sbjct: 626 PTLV-----EALKDKQVKSIACGTNFTAAI 650
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 26/118 (22%)
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
++ CG H ++V+ G+V+SWG E G L GD+ + H PK
Sbjct: 312 NIACGNRHAALVTKQGEVFSWGEEYGGRL--------GHGGDSDA---------HHPKLI 354
Query: 245 DPVQ------VACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTGKTIDFFAPAIVLWP 294
D + VACG HT VT G L++WG G SG+LG GK + + P V P
Sbjct: 355 DALSNLNIELVACGEYHTCAVTLSG-DLYTWGDGTYNSGLLGHGKDVSHWVPKRVTGP 411
>gi|302803630|ref|XP_002983568.1| hypothetical protein SELMODRAFT_118244 [Selaginella moellendorffii]
gi|300148811|gb|EFJ15469.1| hypothetical protein SELMODRAFT_118244 [Selaginella moellendorffii]
Length = 413
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 143/357 (40%), Gaps = 104/357 (29%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT--VVKV 62
CSV GG +L + + G ++ G +SS + G L S + PV + HG V +
Sbjct: 64 CSVSCGGAHTLILTDKGRVFATG----LNSSGQLGVPLKSESSFDPV-EVHGFPDPCVHI 118
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR--LRPKIIETF------ 114
A G H A+ S+GETY WG N+ GQLGLG R + P+ +E+
Sbjct: 119 AAGRYHSAAITSSGETYV--------WGRNSEGQLGLGKRAKSVYITPQKMESLAGMRLK 170
Query: 115 ---------------NQDSPWAVYEVTC-------GSF--------HTALLTH------- 137
Q W C G F +T + H
Sbjct: 171 ALALGTDHSLGLAETGQVLSWGTNRFGCLGHGEMTGFFDFFKDTNEYTPRIIHCLEKLQV 230
Query: 138 RKRPNDMLESMC-------WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
R ++ S C ++FG G QLG G A P + +LP+ + S+ CG
Sbjct: 231 RSVSAGLVHSACADDSGTIYSFGQGSMCQLGLGNNNDASQPCPIPDLPR---VSSISCGG 287
Query: 191 FHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 246
+HT ++ GD+++WG + G G ++ R E +++ +S
Sbjct: 288 YHTGAITQDGDIYTWGSNEHGCLGSGFRASSKPLRLE---SLAEAFMS------------ 332
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRS------------GVLGTGKTIDFFAPAIV 291
+++CG HT ++ DGY ++SWG G S G LG G DFF P +
Sbjct: 333 -EISCGWKHTAAIS-DGY-IFSWGWGGSYGTYATQAESSGGQLGVGTDFDFFEPVPI 386
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 28/201 (13%)
Query: 89 WGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESM 148
WG + G+LGL + S+ P + P + V+CG HT +LT + R
Sbjct: 33 WGNGDQGRLGLSESGSQFEPVLCRALESHEPCS---VSCGGAHTLILTDKGR-------- 81
Query: 149 CWTFGLGENGQLGHG-TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM 207
+ GL +GQLG ++S+ P +V P V + G +H++ ++S+G+ + WG
Sbjct: 82 VFATGLNSSGQLGVPLKSESSFDPVEVHGFPDPC--VHIAAGRYHSAAITSSGETYVWGR 139
Query: 208 --EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
E LGL G + I+ +A G H++ + + G +
Sbjct: 140 NSEGQLGL-----------GKRAKSVYITPQKMESLAGMRLKALALGTDHSLGLAETG-Q 187
Query: 266 LWSWGRGRSGVLGTGKTIDFF 286
+ SWG R G LG G+ FF
Sbjct: 188 VLSWGTNRFGCLGHGEMTGFF 208
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 114/319 (35%), Gaps = 86/319 (26%)
Query: 19 NAGALW--MWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAG 76
AG W +WGN D G S F P H V+CG H + L G
Sbjct: 24 KAGKRWVALWGN---GDQGRLGLSESGSQFEPVLCRALESHEPCSVSCGGAHTLILTDKG 80
Query: 77 ETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL 135
++ G N++GQLG+ + ES P + F P + G +H+A +
Sbjct: 81 RV--------FATGLNSSGQLGVPLKSESSFDPVEVHGF----PDPCVHIAAGRYHSAAI 128
Query: 136 THR-----------------KRPNDM------LESMC------------WTFGLGENGQ- 159
T KR + +ES+ + GL E GQ
Sbjct: 129 TSSGETYVWGRNSEGQLGLGKRAKSVYITPQKMESLAGMRLKALALGTDHSLGLAETGQV 188
Query: 160 ----------LGHG--TTQSALVPEQVKELPQYVYLV------SVDCGLFHTSVVSSAGD 201
LGHG T + + P+ ++ + SV GL H++ +G
Sbjct: 189 LSWGTNRFGCLGHGEMTGFFDFFKDTNEYTPRIIHCLEKLQVRSVSAGLVHSACADDSGT 248
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
++S+G +C L DA P I P ++CG HT +T
Sbjct: 249 IYSFGQGS---MC---QLGLGNNNDASQPCPI-------PDLPRVSSISCGGYHTGAITQ 295
Query: 262 DGYKLWSWGRGRSGVLGTG 280
DG +++WG G LG+G
Sbjct: 296 DG-DIYTWGSNEHGCLGSG 313
>gi|302847903|ref|XP_002955485.1| hypothetical protein VOLCADRAFT_119094 [Volvox carteri f.
nagariensis]
gi|300259327|gb|EFJ43556.1| hypothetical protein VOLCADRAFT_119094 [Volvox carteri f.
nagariensis]
Length = 1660
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 104/211 (49%), Gaps = 32/211 (15%)
Query: 85 VCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPND 143
V ++G +G+LGLG +S+ P+I+ + + +++ +V CG HTA++T
Sbjct: 8 VLATFGTAADGRLGLGFPLKSQFYPRIVASL---AGYSIKQVACGGAHTAVVTD------ 58
Query: 144 MLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVW 203
+ +TFGL GQLGH + LP V V+V G +HT ++SAG+VW
Sbjct: 59 --DGALFTFGLNSWGQLGHSRQDKFVASPLEVGLPDPV--VAVAAGGYHTLALTSAGEVW 114
Query: 204 SWGM--EKGLGLC-PNASLTRNEAGDAISPILI---SGNGPHGPKFQDPVQVACGAAHTV 257
WGM E LG+ P+ T G + P L+ SG G V +A G H++
Sbjct: 115 CWGMAGEGQLGIGEPSEGAT---GGRQVEPRLVGSLSGAG--------VVSLAAGDHHSL 163
Query: 258 LVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+T G +L+SWGRG G LG G P
Sbjct: 164 ALTRSG-ELFSWGRGDQGALGHGTVAITAGP 193
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 48/216 (22%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I V GG + + + GAL+ +G +S + G S F SP+ VV VA
Sbjct: 43 IKQVACGGAHTAVVTDDGALFTFGL----NSWGQLGHSRQDKFVASPLEVGLPDPVVAVA 98
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES------RLRPKIIETFNQD 117
G H +AL SAGE + C WG GQLG+G+ ++ P+++ +
Sbjct: 99 AGGYHTLALTSAGEVW------C--WGMAGEGQLGIGEPSEGATGGRQVEPRLVGSL--- 147
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
S V + G H+ LT R ++ +++G G+ G LGHGT
Sbjct: 148 SGAGVVSLAAGDHHSLALT---RSGEL-----FSWGRGDQGALGHGT------------- 186
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGL 213
V++ G + + V S G+ + WG G L
Sbjct: 187 ------VAITAGPYSSGAVDSRGNAYVWGYGTGYQL 216
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 29/175 (16%)
Query: 39 GFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG 98
GF L S F P V G+++ +VACG H + +D +++G N+ GQLG
Sbjct: 23 GFPLKSQFYPRIVASLAGYSIKQVACGGAHTAVVT--------DDGALFTFGLNSWGQLG 74
Query: 99 LGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENG 158
SR + P V V G +HT LT E CW G+ G
Sbjct: 75 ----HSRQDKFVASPLEVGLPDPVVAVAAGGYHTLALTSAG------EVWCW--GMAGEG 122
Query: 159 QLGHG-TTQSALVPEQVKELPQYV------YLVSVDCGLFHTSVVSSAGDVWSWG 206
QLG G ++ A QV+ P+ V +VS+ G H+ ++ +G+++SWG
Sbjct: 123 QLGIGEPSEGATGGRQVE--PRLVGSLSGAGVVSLAAGDHHSLALTRSGELFSWG 175
>gi|358419997|ref|XP_003584389.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Bos
taurus]
Length = 538
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 116/247 (46%), Gaps = 38/247 (15%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+ + V VACG H + L G+ Y + G NN GQLGLGD + R
Sbjct: 123 PTCIKALKPEKVKFVACGRNHTLILTGGGQVY--------ATGGNNEGQLGLGDTDERSA 174
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
+I F S + +++ GS +A LT + + +G GQ+G +
Sbjct: 175 FHLISFFT--SQHKIKQLSAGSNTSAALTE--------DGELFMWGDNSEGQIGLQNITN 224
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAG 225
VP QV + + + +S CG +H++ V++ G+++++G E G LGL P +
Sbjct: 225 ICVPHQVT-IGKPISWIS--CGYYHSAFVTTEGELYTFGEPESGKLGLPPKLLVNHK--- 278
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK-TID 284
P L+ G + +QVACG HTV++T+ ++++G G+ G LG G T +
Sbjct: 279 ---VPQLVPGIS------EKVIQVACGGGHTVVLTEKA--VYTFGLGQFGQLGLGTFTFE 327
Query: 285 FFAPAIV 291
P ++
Sbjct: 328 TSEPKVI 334
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 36/201 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + AG S A+ G L+MWG+ +S + G +++ P G + +
Sbjct: 186 KIKQLSAGSNTSAALTEDGELFMWGD----NSEGQIGLQNITNIC-VPHQVTIGKPISWI 240
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL------GDRESRLRPKIIETFNQ 116
+CG H + + GE Y++G +G+LGL + +L P I E
Sbjct: 241 SCGYYHSAFVTTEGE--------LYTFGEPESGKLGLPPKLLVNHKVPQLVPGISE---- 288
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V +V CG HT +LT E +TFGLG+ GQLG GT +V E
Sbjct: 289 ----KVIQVACGGGHTVVLT---------EKAVYTFGLGQFGQLGLGTFTFETSEPKVIE 335
Query: 177 LPQYVYLVSVDCGLFHTSVVS 197
+ + V CG HT++++
Sbjct: 336 SVKDKKISHVCCGENHTALIT 356
>gi|242059927|ref|XP_002459109.1| hypothetical protein SORBIDRAFT_03g046020 [Sorghum bicolor]
gi|241931084|gb|EES04229.1| hypothetical protein SORBIDRAFT_03g046020 [Sorghum bicolor]
Length = 892
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 133/292 (45%), Gaps = 34/292 (11%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ +G L+ WG+ G + VS + P V G V ++CG
Sbjct: 167 VACGEYHTCAVTLSGDLYTWGDGTF-KFGLLGHGNDVSHWVPKHVNGPLEGIHVSSISCG 225
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ + ++G + G LG GDRES P+ +E+
Sbjct: 226 PWHTALVTSAGQLF--------TFGDGSFGVLGHGDRESISVPREVESLKG---LRTVRA 274
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ G+LGHG ++ LVP V L +
Sbjct: 275 ACGVWHTAAVVEVMAGNSSSSNCSSGKIFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPN 334
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ V CG T ++++G V++ G + LG N D + P+ + G
Sbjct: 335 F-CQVACGHCLTVALTTSGHVYTMGSAVYGQLG---------NTQADGMLPVRVEGK--L 382
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F + +++CGA H ++T ++++WG+G +G LG G T D P +V
Sbjct: 383 HKNFVE--EISCGAYHVAVLTSR-TEVYTWGKGANGRLGHGDTDDKNTPTLV 431
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 104/246 (42%), Gaps = 43/246 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V ++CG H + GE Y SWG + G+LG G +PK+I+ S
Sbjct: 112 VQNISCGGRHAALVTKQGEIY--------SWGEESGGRLGHGVDCDVSQPKLIDAL---S 160
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG--ENGQLGHGTTQSALVPEQVKE 176
+ V CG +HT +T L +T+G G + G LGHG S VP+ V
Sbjct: 161 HMNIELVACGEYHTCAVT--------LSGDLYTWGDGTFKFGLLGHGNDVSHWVPKHVNG 212
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ +++ S+ CG +HT++V+SAG ++++G + G+ + + +
Sbjct: 213 PLEGIHVSSISCGPWHTALVTSAGQLFTFG-DGSFGVLGHGDRESISVPREVESL----- 266
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGKTIDF 285
K V+ ACG HT V + K+++WG G G LG G
Sbjct: 267 -----KGLRTVRAACGVWHTAAVVEVMAGNSSSSNCSSGKIFTWGDGDKGRLGHGDKEAK 321
Query: 286 FAPAIV 291
P V
Sbjct: 322 LVPTCV 327
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 104/241 (43%), Gaps = 37/241 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
+ S+ G + + +AG L+ +G +G F ++ S P V G
Sbjct: 218 HVSSISCGPWHTALVTSAGQLFTFG---------DGSFGVLGHGDRESISVPREVESLKG 268
Query: 57 HTVVKVACGSEHVVALVS--AGETYKGEDLV--CYSWGANNNGQLGLGDRESRLRPKIIE 112
V+ ACG H A+V AG + ++WG + G+LG GD+E++L P +
Sbjct: 269 LRTVRAACGVWHTAAVVEVMAGNSSSSNCSSGKIFTWGDGDKGRLGHGDKEAKLVPTCVA 328
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPE 172
+ + +V CG T LT +T G GQLG+ T ++P
Sbjct: 329 ALVEPN---FCQVACGHCLTVALT--------TSGHVYTMGSAVYGQLGN-TQADGMLPV 376
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
+V+ ++ + CG +H +V++S +V++WG KG N L + D +P L
Sbjct: 377 RVEGKLHKNFVEEISCGAYHVAVLTSRTEVYTWG--KGA----NGRLGHGDTDDKNTPTL 430
Query: 233 I 233
+
Sbjct: 431 V 431
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 19/130 (14%)
Query: 169 LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGD 226
LVP+ + E + + ++ CG H ++V+ G+++SWG E G LG + +++ + D
Sbjct: 99 LVPKPL-EFAVRLDVQNISCGGRHAALVTKQGEIYSWGEESGGRLGHGVDCDVSQPKLID 157
Query: 227 AISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTGKTID 284
A+S + I VACG HT VT G L++WG G + G+LG G +
Sbjct: 158 ALSHMNIE-------------LVACGEYHTCAVTLSG-DLYTWGDGTFKFGLLGHGNDVS 203
Query: 285 FFAPAIVLWP 294
+ P V P
Sbjct: 204 HWVPKHVNGP 213
>gi|259490348|ref|NP_001159191.1| uncharacterized protein LOC100304276 [Zea mays]
gi|223942555|gb|ACN25361.1| unknown [Zea mays]
gi|414871691|tpg|DAA50248.1| TPA: putative regulator of chromosome condensation (RCC1) family
protein [Zea mays]
Length = 480
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 119/291 (40%), Gaps = 91/291 (31%)
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ACG EH A+ S G + +WGAN GQLG G +S PK +++ +
Sbjct: 65 IACGREHTAAVASDGSLF--------TWGANEFGQLGDGTEDSAKEPKKVKSLETE---F 113
Query: 122 VYEVTCGSFHTALLTHRKR------------------------------PNDML------ 145
V V+CG+ TA + + PN ++
Sbjct: 114 VKSVSCGAHCTAAVAEPRENDGTVSKSRLWVWGQNQGSDYPRLFWGAFTPNTVIKQVSCG 173
Query: 146 ---------ESMCWTFGLGENGQLGHGTTQSALVPEQV--------KELPQYVYLVSVDC 188
+ + +G E GQLG G T L +V + P+ V +V V C
Sbjct: 174 AVHVMALSEDGLLQAWGYNEYGQLGRGRTSQGLQGARVLNAYARFLDDAPEQVKIVRVSC 233
Query: 189 GLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD---------AISPILISGNGPH 239
G +HT+ +S G+V++WG+ +G + SL ++GD A+ I++
Sbjct: 234 GEYHTAAISENGEVYTWGLGS-MGQLGHCSL---QSGDNELIPRRVVALDGIVVG----- 284
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
V+CG H+ VT+ G L++WG G G LG G FF+ ++
Sbjct: 285 --------DVSCGGVHSCAVTEGG-ALYAWGGGHVGQLGVGPQGGFFSCSL 326
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 96/222 (43%), Gaps = 47/222 (21%)
Query: 87 YSWGANNNGQLGLGDRESRLR------PKIIETFNQDS-PWAVYEVTCGSFHTALLTHRK 139
Y WG N++GQ +E LR PK+ + N S W ++ CG HTA +
Sbjct: 22 YIWGYNHSGQTARKGKECHLRIPKSLPPKLFKLGNGKSLRWT--DIACGREHTAAVAS-- 77
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS-- 197
+ +T+G E GQLG GT SA P++VK L + ++ SV CG T+ V+
Sbjct: 78 ------DGSLFTWGANEFGQLGDGTEDSAKEPKKVKSL-ETEFVKSVSCGAHCTAAVAEP 130
Query: 198 -------SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
S +W WG +G + R G +I QV+
Sbjct: 131 RENDGTVSKSRLWVWGQNQG------SDYPRLFWGAFTPNTVIK-------------QVS 171
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
CGA H + +++DG L +WG G LG G+T A VL
Sbjct: 172 CGAVHVMALSEDGL-LQAWGYNEYGQLGRGRTSQGLQGARVL 212
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 35/162 (21%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG---LGDRESRLRPKIIETFN 115
+V+V+CG H A+ GE Y +WG + GQLG L ++ L P+ + +
Sbjct: 228 IVRVSCGEYHTAAISENGEVY--------TWGLGSMGQLGHCSLQSGDNELIPRRVVALD 279
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT----------- 164
V +V+CG H+ +T + +G G GQLG G
Sbjct: 280 ---GIVVGDVSCGGVHSCAVTE--------GGALYAWGGGHVGQLGVGPQGGFFSCSLNG 328
Query: 165 TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ L V +P V L + CG HT V G ++ WG
Sbjct: 329 SDMLLRNIPVLVIPSGVRLAT--CGHSHTLVSMKDGRIYGWG 368
>gi|156396598|ref|XP_001637480.1| predicted protein [Nematostella vectensis]
gi|156224592|gb|EDO45417.1| predicted protein [Nematostella vectensis]
Length = 753
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 137/343 (39%), Gaps = 65/343 (18%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLP-----DSSTEGGFSLVSSFTPSPVWDFHG 56
SQ + G + + +G ++ WG D E G S+ P V H
Sbjct: 30 SQRVRLSCGQHHTAVVSASGDVYTWGKSHKGRLGHGDLIEEEGKSM-----PFRVEILHM 84
Query: 57 H--TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
H V+ VACG EH +AL G YSWG++ GQLG GD + RP +
Sbjct: 85 HRIKVLSVACGIEHTLALCRDG---------VYSWGSSEYGQLGQGDTQQHTRPVYVTEL 135
Query: 115 NQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
+ A V CG +H+ L+ + +++G G +GQLG + + AL+P V
Sbjct: 136 SDKKCIA---VVCGHYHSLALS--------ADQQVYSWGWGVHGQLGLDSIEDALLPSHV 184
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSW-----------------------GMEKGL 211
L ++ + G HT+V+++ G V+++ +EK
Sbjct: 185 TSLSG-AFVTQLAAGYSHTAVLTTEGKVYTFGGGLYGQLGLGTTSKQTLPQLVQALEKDR 243
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
A + + G PH +F + CG H + VT + ++++WG
Sbjct: 244 IYLICCGSFETVAVSSEQKLFNWGRSPHYFRFH---MIHCGNWHYLAVT-EARQVFTWGF 299
Query: 272 GRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEI 314
G LG ++D +L+P + ++ + + T + E
Sbjct: 300 NDHGQLGHSTSMDH-----LLFPTVVQKLNESFVATASVGAEF 337
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 87/218 (39%), Gaps = 41/218 (18%)
Query: 13 MSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVAL 72
++L+ D W WG G S+ + PS V G V ++A G H L
Sbjct: 151 LALSADQQVYSWGWGV-----HGQLGLDSIEDALLPSHVTSLSGAFVTQLAAGYSHTAVL 205
Query: 73 VSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHT 132
+ G+ Y + G + L P++++ +D +Y + CGSF T
Sbjct: 206 TTEGKVYTFGGGLYGQLGLGTTSKQTL--------PQLVQALEKDR---IYLICCGSFET 254
Query: 133 ALLTHRKR-------PN----DMLESMCW------------TFGLGENGQLGHGTTQSAL 169
++ ++ P+ M+ W T+G ++GQLGH T+ L
Sbjct: 255 VAVSSEQKLFNWGRSPHYFRFHMIHCGNWHYLAVTEARQVFTWGFNDHGQLGHSTSMDHL 314
Query: 170 V-PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ P V++L + ++ + G + + + G VW WG
Sbjct: 315 LFPTVVQKLNE-SFVATASVGAEFSVAMDATGQVWVWG 351
>gi|328868228|gb|EGG16606.1| regulator of chromosome condensation domain-containing protein
[Dictyostelium fasciculatum]
Length = 1076
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 113/273 (41%), Gaps = 42/273 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN-----CPLP------DSSTEGGFSLVSSFTPSPV 51
QI V G +L++ GA++ WG+ C LP T + S
Sbjct: 308 QITMVACGSKHTLSLTCDGAVYAWGSNRNGQCGLPLDYPILHQPTRVKIEYNQTNNNSNN 367
Query: 52 WDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
+ ++CG H VA+ + YSWG ++GQLGLG R P I
Sbjct: 368 NTSTFVIIGSISCGYSHSVAV-------QAHSSQLYSWGKGSDGQLGLGSRSDHSSPTAI 420
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
F D + + CG +HT LT +S +++G+G LGHG + LVP
Sbjct: 421 PLFTSD---PIVRICCGHYHTVALTS--------QSKLYSWGMG--FALGHGQAKDKLVP 467
Query: 172 EQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM--EKGLGLCPNASLTRNEAGDAIS 229
++ +V++ CG HT+V++ G ++G LG +NE+ ++
Sbjct: 468 TLIEAFSPCTKVVNIACGFSHTAVLTEKGKCLTFGHGDHGQLGYFNK----KNESTSSLV 523
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
PI P+G ++CG +T L+ D
Sbjct: 524 PI-----TPNGIDQLQISSISCGWFNTFLIVKD 551
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 128/288 (44%), Gaps = 47/288 (16%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG------D 101
P + G + VACGS+H ++L G Y+WG+N NGQ GL
Sbjct: 298 PRRIGTLDGVQITMVACGSKHTLSLTCDG--------AVYAWGSNRNGQCGLPLDYPILH 349
Query: 102 RESRLRPKIIETFNQDSPWA-----VYEVTCGSFHT-ALLTHRKRPNDMLESMCWTFGLG 155
+ +R++ + +T N + + ++CG H+ A+ H S +++G G
Sbjct: 350 QPTRVKIEYNQTNNNSNNNTSTFVIIGSISCGYSHSVAVQAH--------SSQLYSWGKG 401
Query: 156 ENGQLGHGTTQSALVPEQVKELPQYVY--LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGL 213
+GQLG G+ P + P + +V + CG +HT ++S ++SWGM LG
Sbjct: 402 SDGQLGLGSRSDHSSPTAI---PLFTSDPIVRICCGHYHTVALTSQSKLYSWGMGFALG- 457
Query: 214 CPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGR 273
+A D + P LI P V +ACG +HT ++T+ G K ++G G
Sbjct: 458 -------HGQAKDKLVPTLIEAFSP----CTKVVNIACGFSHTAVLTEKG-KCLTFGHGD 505
Query: 274 SGVLGT-GKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLE 320
G LG K + + + + P ++ + ++ G + + KDL
Sbjct: 506 HGQLGYFNKKNESTSSLVPITPNGIDQLQISSISCGWFNTFLIVKDLN 553
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 23/120 (19%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P ++ F G +++ G H + + S G+ YSWG+N+ GQLG GD +
Sbjct: 83 PDTIYQFIGKNPQQLSSGHNHQLLITSGGD--------IYSWGSNSKGQLGHGDISHNHQ 134
Query: 108 PKIIETFNQDSPWAVY-----EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
+ I F+ A+Y +V G+ + +LT E ++FG+ GQLG+
Sbjct: 135 IEPIRKFSLLK--ALYGIVPIQVAAGNEFSMVLTS--------EGTVYSFGVSNEGQLGN 184
>gi|442319025|ref|YP_007359046.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
gi|441486667|gb|AGC43362.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
Length = 746
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 128/304 (42%), Gaps = 54/304 (17%)
Query: 1 MSQICSVKAG-GMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHG 56
++ + +V+AG G S+A G+LW+WG L D +T S ++P PV F G
Sbjct: 95 LTSVTAVEAGRGNYSMARRADGSLWVWGYNTYGQLGDGTT------TSRWSPIPVPGFSG 148
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
V V+ G H +AL S D ++WG N +GQLG G RL P +
Sbjct: 149 --VSSVSGGYMHSMALKS--------DGTVWAWGRNADGQLGDGSTTQRLSPVRALGLS- 197
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
V V+ G +A L + WT+G +G+LG+GT L P QV
Sbjct: 198 ----LVTSVSAGYDFSAAL--------KADGTVWTWGDNTDGELGNGTLTDRLTPAQVPG 245
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILIS 234
L V+L+ G H V S G VW WG LGL A + + ++P +
Sbjct: 246 LTGVVFLM---AGHSHVMAVKSDGTVWVWGRNDWGVLGLGEGAPIRQ------LTPTQV- 295
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
P V G +TV + DG LW WG G LG G + P + P
Sbjct: 296 ------PGISQVAFVDSGEHYTVALKTDG-TLWGWGYNNYGQLGEGTGGVKYLPTQL--P 346
Query: 295 PLTE 298
LT+
Sbjct: 347 GLTQ 350
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 121/273 (44%), Gaps = 48/273 (17%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + +V AG SLA+ + G LW WG S + G + TP+ V +F G V
Sbjct: 497 LTGVAAVAAGDGFSLALKSDGTLWAWGRN---SSGSLGDGTTTGRTTPALVPNFTGVKAV 553
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
A G++HV+AL + G ++WG N+ GQLG G +L P +
Sbjct: 554 ATAPGADHVLALKTNG--------TLWAWGGNSYGQLGDGSVLRKLSPVFVNLT------ 599
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V + GS H+ ++ WT+G + QLG GT + +P QV+ +
Sbjct: 600 GVLSIATGSDHSLVV--------RTGGAVWTWGRNDAAQLGDGTGTTRTLPVQVQGVTGA 651
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI---SPILISGNG 237
L + D H+ ++ S G +W+WG S + E GD P+ +
Sbjct: 652 TALAAGD---RHSLMLRSDGTLWAWG-----------SNSEGELGDGTMTGRPLPVRVRA 697
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG 270
P G V ++ GA H++ +T DG +W+WG
Sbjct: 698 PAG-----VVALSAGARHSLAMTPDG-TVWAWG 724
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 48/292 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTE-GGFSLVSSFTPSPVWDFHGHTV 59
+S + SV AG S A+ G +W WG+ ++ E G +L TP+ V G V
Sbjct: 196 LSLVTSVSAGYDFSAALKADGTVWTWGD----NTDGELGNGTLTDRLTPAQVPGLTG--V 249
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE--SRLRPKIIETFNQD 117
V + G HV+A+ S D + WG N+ G LGLG+ +L P + +Q
Sbjct: 250 VFLMAGHSHVMAVKS--------DGTVWVWGRNDWGVLGLGEGAPIRQLTPTQVPGISQ- 300
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V V G +T L + W +G GQLG GT +P Q L
Sbjct: 301 ----VAFVDSGEHYTVAL--------KTDGTLWGWGYNNYGQLGEGTGGVKYLPTQ---L 345
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P + ++ G +H + G W+WG+ A++TR ++ A++
Sbjct: 346 PGLTQVATLGVGRYHAMAIKQDGTAWAWGLHDAY---QYANVTRPDSAVAVA-------- 394
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA 289
+F ++ G T+++ DG +W GR SG LG G PA
Sbjct: 395 ---TQFTGALRPVGGLYETLVLKADG-TVWGAGRNGSGQLGDGSGTQRVVPA 442
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 115/307 (37%), Gaps = 74/307 (24%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG--------NCPLPDSSTEGGFSLVSSFTPSPVW 52
++Q+ ++ G ++AI G W WG N PDS+
Sbjct: 348 LTQVATLGVGRYHAMAIKQDGTAWAWGLHDAYQYANVTRPDSA----------------- 390
Query: 53 DFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYS----WGA--NNNGQLGLGDRESRL 106
VA ++ AL G Y E LV + WGA N +GQLG G R+
Sbjct: 391 ---------VAVATQFTGALRPVGGLY--ETLVLKADGTVWGAGRNGSGQLGDGSGTQRV 439
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P V G+ H AL + W +G +GQLG G+T
Sbjct: 440 VPAQAVGLT-----GAVSVASGANH-ALAAKS-------DGTVWAWGGNGSGQLGDGSTT 486
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD 226
++L+P QV P + +V G + + S G +W+WG + SL
Sbjct: 487 ASLIPIQV---PGLTGVAAVAAGDGFSLALKSDGTLWAWGRNS------SGSLGDGTTTG 537
Query: 227 AISPILISGNGPHGPKFQ--DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
+P L+ P F V A GA H + + +G LW+WG G LG G +
Sbjct: 538 RTTPALV-------PNFTGVKAVATAPGADHVLALKTNG-TLWAWGGNSYGQLGDGSVLR 589
Query: 285 FFAPAIV 291
+P V
Sbjct: 590 KLSPVFV 596
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 85/215 (39%), Gaps = 31/215 (14%)
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPN 142
D +SWG N G+LG G R P + + E G++ A +R +
Sbjct: 64 DGTVWSWGTNYGGELGDGTHNHRSTPAQVPNLTSVT---AVEAGRGNYSMA-----RRAD 115
Query: 143 DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV 202
L W +G GQLG GTT S P V P + + SV G H+ + S G V
Sbjct: 116 GSL----WVWGYNTYGQLGDGTTTSRWSPIPV---PGFSGVSSVSGGYMHSMALKSDGTV 168
Query: 203 WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
W+WG L ++ R +SP+ G V+ G + + D
Sbjct: 169 WAWGRNADGQLGDGSTTQR------LSPVRALG-------LSLVTSVSAGYDFSAALKAD 215
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
G +W+WG G LG G D PA V P LT
Sbjct: 216 G-TVWTWGDNTDGELGNGTLTDRLTPAQV--PGLT 247
>gi|260796835|ref|XP_002593410.1| hypothetical protein BRAFLDRAFT_119547 [Branchiostoma floridae]
gi|229278634|gb|EEN49421.1| hypothetical protein BRAFLDRAFT_119547 [Branchiostoma floridae]
Length = 538
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 118/295 (40%), Gaps = 40/295 (13%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG-NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+ Q C + G ++ I ++ G NC SS G S P + +
Sbjct: 28 IKQACVFGSSGNEAIVITQDDDVYALGSNC----SSCLGVGDAQSGLEPRKIDILCKKKI 83
Query: 60 VKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V + GS HV+ G+ Y SWG N QLG G L P++I T
Sbjct: 84 VDIGYGSGPHVLVCTDNGDLY--------SWGHNGYSQLGNGSTNQGLSPQLITT--NLI 133
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V +V CGS H+ LT LE + +G GQ+G GTT + P +V
Sbjct: 134 GRKVVKVACGSHHSLALT--------LEGEVFAWGYNNCGQVGSGTTTNQATPRKVAACL 185
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGDAISPILISGN 236
+ + CG + + G+V+ WG LG+ N + A+ +++
Sbjct: 186 GTRKVTEIACGQTSSMALLDNGEVYGWGYNGNGQLGVGNNVNQPNPCRVAALQQMIV--- 242
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
VQ+ CG AH + +TD+G +++WG G LGTG + P +
Sbjct: 243 ----------VQIVCGYAHAMALTDEG-SVYAWGANSYGQLGTGNKANLVTPTKI 286
>gi|431913810|gb|ELK15239.1| RCC1 and BTB domain-containing protein 1 [Pteropus alecto]
Length = 531
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 91/211 (43%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGIAP--IQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKKVVGIACGQTSSMAVLDNGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + P ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLNPVHIM 280
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 130/322 (40%), Gaps = 54/322 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLI-----KQVVEVACGSHHSMALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
++WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 V--------FAWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKKVVGIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV-ACGAAHT 256
G +++WG L + ++P+ I + + V++ AC +AHT
Sbjct: 250 DEGLLYAWGANT------YGQLGTGNKNNLLNPVHIM------VEKERVVEIAACHSAHT 297
Query: 257 VLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNT 307
G ++ WG RG+S +L T FA V W L+ E +D L
Sbjct: 298 SAAKTQGGHVYMWGQCRGQSVILPHLTSFSCTDDVFACFATPAVSWRLLSVE-HEDFLTV 356
Query: 308 GGLDDEIKTKDLEGAEERDEKL 329
E K+ + E D K
Sbjct: 357 ----SESLKKEFDSPETADLKF 374
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FG+ + LG G +QS LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGMNYSNCLGTGDSQSTLVPKKLEALCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+PI + N + V+VACG+ H++ + DG ++++
Sbjct: 103 G------YSQLGNGTTNQGIAPIQVCTN----LLIKQVVEVACGSHHSMALAADG-EVFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 152 WGYNNCGQVGSGSTANQPTP 171
>gi|27085405|gb|AAN85438.1| inositol 5-phosphatase 2 [Dictyostelium discoideum]
Length = 1800
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 50/238 (21%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD--------- 53
+ +KAG +S AI AG L+ WG+ + + SFTP+ + +
Sbjct: 127 NVIKIKAGNNVSAAITEAGDLYCWGSSAYGQLGNGKMNAKLHSFTPTTILNPLIPDAEKD 186
Query: 54 ---FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKI 110
+ + G++H +A+ + G +SWG+N GQLGLG ++L P
Sbjct: 187 DPIYQNLQYTNICFGAQHTIAISTTG--------AIFSWGSNQYGQLGLGHCNAKLVPVP 238
Query: 111 IETFNQDSPWA----------------------VYEVTCGSFHTALLTHRKRPNDMLESM 148
I N A V ++ CG+FH+ALLT LE
Sbjct: 239 IHLDNSFERRAGHINSLGEIVTTDFTAKTIHRIVVDIACGNFHSALLT--------LEGD 290
Query: 149 CWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+ +G + GQLG G + VP+ VK ++V + + G HT +++ DV+++G
Sbjct: 291 LFLWGSNQYGQLGQGDSLDQSVPKTVKGSLEFVKINRMALGNNHTILLTKEQDVFTFG 348
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 77/187 (41%), Gaps = 46/187 (24%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---------------CPLP---DSSTEGGFSLVS 44
Q ++ G ++AI GA++ WG+ P+P D+S E ++
Sbjct: 194 QYTNICFGAQHTIAISTTGAIFSWGSNQYGQLGLGHCNAKLVPVPIHLDNSFERRAGHIN 253
Query: 45 SFTPSPVWDFHGHT----VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG 100
S DF T VV +ACG+ H L G+ + WG+N GQLG G
Sbjct: 254 SLGEIVTTDFTAKTIHRIVVDIACGNFHSALLTLEGD--------LFLWGSNQYGQLGQG 305
Query: 101 DRESRLRPKIIE---TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN 157
D + PK ++ F + + G+ HT LLT E +TFG E
Sbjct: 306 DSLDQSVPKTVKGSLEF-----VKINRMALGNNHTILLTK--------EQDVFTFGSNEF 352
Query: 158 GQLGHGT 164
QLGHG+
Sbjct: 353 YQLGHGS 359
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 113/278 (40%), Gaps = 67/278 (24%)
Query: 41 SLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG 100
++V S P PV V+K+ G+ A+ AG DL C WG++ GQLG G
Sbjct: 110 NVVDSAVPLPVDTLSKFNVIKIKAGNNVSAAITEAG------DLYC--WGSSAYGQLGNG 161
Query: 101 DRESRLRP--------KIIETFNQDSPWAVYE------VTCGSFHTALLTHRKRPNDMLE 146
++L +I +D P +Y+ + G+ HT ++
Sbjct: 162 KMNAKLHSFTPTTILNPLIPDAEKDDP--IYQNLQYTNICFGAQHTIAIS--------TT 211
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPE-------------QVKELPQYV-----------Y 182
+++G + GQLG G + LVP + L + V
Sbjct: 212 GAIFSWGSNQYGQLGLGHCNAKLVPVPIHLDNSFERRAGHINSLGEIVTTDFTAKTIHRI 271
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V + CG FH+++++ GD++ WG + L + ++ D P + G +
Sbjct: 272 VVDIACGNFHSALLTLEGDLFLWGSNQY------GQLGQGDSLDQSVPKTVKG----SLE 321
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
F ++A G HT+L+T + ++++G LG G
Sbjct: 322 FVKINRMALGNNHTILLTKE-QDVFTFGSNEFYQLGHG 358
>gi|417411454|gb|JAA52162.1| Putative alpha-tubulin suppressor, partial [Desmodus rotundus]
Length = 534
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 99 EDGVVYAWGHNGYSQLGNGTTNQGIAP--IQVCTNLLIKQVVEVACGSHHSVALA----- 151
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V G+
Sbjct: 152 ---ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGE 208
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L + ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 209 VYGWGYNG------NGQLGLGNNVNQLTPVRVA--ALHSVCVN---QIVCGYAHTLALTD 257
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + +PA ++
Sbjct: 258 EGL-LYAWGANTYGQLGTGNKNNLLSPAHIM 287
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 119/292 (40%), Gaps = 49/292 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + VV+VACGS H VAL + GE
Sbjct: 101 GVVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLI-----KQVVEVACGSHHSVALAADGE 155
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
++WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 156 V--------FAWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKRVVGIACGQ------TS 199
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 200 SMAVLDNGEVYGW--GYNGNGQLGLGNNVNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 256
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV-ACGAAHT 256
G +++WG L + +SP I + + V++ AC +AHT
Sbjct: 257 DEGLLYAWGANT------YGQLGTGNKNNLLSPAHIM------VEKERVVEIAACHSAHT 304
Query: 257 VLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEE 299
G ++ WG RG+S +L T FA V W L+ E
Sbjct: 305 SAAKTQGGHVYMWGQCRGQSVILPHLTHLSCTDDVFACFATPAVSWRLLSVE 356
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS L+P++++ L + + +S G H + + G V++WG
Sbjct: 51 FVFGLNYSNCLGTGDNQSTLIPKKLEALCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 109
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+PI + N + V+VACG+ H+V + DG ++++
Sbjct: 110 G------YSQLGNGTTNQGIAPIQVCTN----LLIKQVVEVACGSHHSVALAADG-EVFA 158
Query: 269 WGRGRSGVLGTGKTIDFFAP 288
WG G +G+G T + P
Sbjct: 159 WGYNNCGQVGSGSTANQPTP 178
>gi|379718300|ref|YP_005310431.1| hypothetical protein PM3016_306 [Paenibacillus mucilaginosus 3016]
gi|378566972|gb|AFC27282.1| hypothetical protein PM3016_306 [Paenibacillus mucilaginosus 3016]
Length = 1239
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 117/295 (39%), Gaps = 50/295 (16%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNC---PLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+V AG SLA+ + G +W +G L D +T S TP V D G VV
Sbjct: 807 TAVSAGENHSLALKSDGTVWAFGYNGYGQLGDGTTS------SQRTPVQVKDLTG--VVA 858
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+A G + +AL S D +SWG N G+LG G P +
Sbjct: 859 IAAGKDFSLALKS--------DGTVWSWGQNTYGELGNGTTTRSSVPVQVALLTD----- 905
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V + G +H L + + +G NG+LG+ +T S P Q
Sbjct: 906 VKAIAAGDYHGVALKK--------DGSVFAWGYNGNGELGNSSTISQSTPVQ----SGVT 953
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ + G +HT + S G VWSWG G G N + T AI P
Sbjct: 954 GIKGIAAGPYHTLALKSDGTVWSWGYN-GYGQLGNGNNTSRSVPAAI------------P 1000
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPL 296
+A G ++ +DG L+SWGR +G LG G T+D P V+ P +
Sbjct: 1001 GLASIASIAAGENQSIAYGNDGI-LYSWGRNANGQLGNGTTVDTNVPHKVIGPNI 1054
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 113/278 (40%), Gaps = 43/278 (15%)
Query: 11 GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVV 70
G ++ I + G +W WG G + S+ P V + G ++ A G H V
Sbjct: 713 GNHTMFIKSDGTVWGWG---YNGHGQLGTGTSNSTSVPGKVINLTGMKMI--AGGENHTV 767
Query: 71 ALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF 130
AL S D ++WG N GQLG +R P + T W V+ G
Sbjct: 768 ALRS--------DGTLHTWGYNGYGQLGDDSTTTRYSPVQVSTLTN---WTA--VSAGEN 814
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
H+ L + W FG GQLG GTT S P QVK+L +V++ G
Sbjct: 815 HSLALKS--------DGTVWAFGYNGYGQLGDGTTSSQRTPVQVKDLTG---VVAIAAGK 863
Query: 191 FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
+ + S G VWSWG + G N + TR+ P+ ++ D +A
Sbjct: 864 DFSLALKSDGTVWSWG-QNTYGELGNGTTTRSSV-----PVQVA-------LLTDVKAIA 910
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
G H V + DG +++WG +G LG TI P
Sbjct: 911 AGDYHGVALKKDG-SVFAWGYNGNGELGNSSTISQSTP 947
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 97/257 (37%), Gaps = 48/257 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ AG SLA+ + G +W WG + G + SS PV V
Sbjct: 853 LTGVVAIAAGKDFSLALKSDGTVWSWGQNTYGE--LGNGTTTRSSV---PVQVALLTDVK 907
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H VAL +D ++WG N NG+LG S+ P Q
Sbjct: 908 AIAAGDYHGVALK--------KDGSVFAWGYNGNGELGNSSTISQSTPV------QSGVT 953
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ + G +HT L + W++G GQLG+G S VP + P
Sbjct: 954 GIKGIAAGPYHTLALKS--------DGTVWSWGYNGYGQLGNGNNTSRSVPAAI---PGL 1002
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH- 239
+ S+ G + + G ++SWG RN G + + N PH
Sbjct: 1003 ASIASIAAGENQSIAYGNDGILYSWG--------------RNANGQLGNGTTVDTNVPHK 1048
Query: 240 --GPKFQDPVQVACGAA 254
GP +P AA
Sbjct: 1049 VIGPNI-NPADTTAPAA 1064
>gi|296083842|emb|CBI24230.3| unnamed protein product [Vitis vinifera]
Length = 953
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 110/260 (42%), Gaps = 53/260 (20%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +ACG H + GE + SWG + G+LG G L PK+I++ + +
Sbjct: 246 VQNIACGGRHAALVTKQGEIF--------SWGEESGGRLGHGVDSDVLHPKLIDSLSNTN 297
Query: 119 PWAVYEVTCGSFHTALLT-------------------------HRKRPNDMLESMCWTFG 153
+ V CG +HT +T R + +T+G
Sbjct: 298 ---IELVACGEYHTCAVTLSGDLYTWGDGTYNFVFQNPGKWSPSRATALNCSSGKLFTWG 354
Query: 154 LGENGQLGHGTTQSALVPEQVKEL--PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
G+ G+LGHG ++ LVP V L P + V CG T ++++G V++ G
Sbjct: 355 DGDKGRLGHGDKEAKLVPTCVAALVDPNFCR---VACGHSLTVALTTSGHVYTMG----- 406
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
P N D P + G F + ++ACGA H ++T ++++WG+
Sbjct: 407 --SPVYGQLGNPQADGKLPTRVEGK--LAKSFVE--EIACGAYHVAVLTSR-TEVYTWGK 459
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G +G LG G T D +P +V
Sbjct: 460 GANGRLGHGDTDDRNSPTLV 479
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 111/282 (39%), Gaps = 53/282 (18%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK-V 62
+ ++ GG + + G ++ WG +S G + S + D +T ++ V
Sbjct: 246 VQNIACGGRHAALVTKQGEIFSWGE----ESGGRLGHGVDSDVLHPKLIDSLSNTNIELV 301
Query: 63 ACGSEHVVALVSAGETY--------------------KGEDLVC-----YSWGANNNGQL 97
ACG H A+ +G+ Y + L C ++WG + G+L
Sbjct: 302 ACGEYHTCAVTLSGDLYTWGDGTYNFVFQNPGKWSPSRATALNCSSGKLFTWGDGDKGRL 361
Query: 98 GLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN 157
G GD+E++L P + + V CG T LT +T G
Sbjct: 362 GHGDKEAKLVPTCVAALVDPN---FCRVACGHSLTVALT--------TSGHVYTMGSPVY 410
Query: 158 GQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNA 217
GQLG+ L P +V+ ++ + CG +H +V++S +V++WG KG N
Sbjct: 411 GQLGNPQADGKL-PTRVEGKLAKSFVEEIACGAYHVAVLTSRTEVYTWG--KGA----NG 463
Query: 218 SLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLV 259
L + D SP L+ K + +ACG T +
Sbjct: 464 RLGHGDTDDRNSPTLV-----EALKDKQVKSIACGTNFTATI 500
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 36/158 (22%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN-------CPLPD----SSTEGGFSLVSSFTPSPV 51
C V G +++A+ +G ++ G+ P D + EG L SF
Sbjct: 382 NFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPTRVEG--KLAKSF----- 434
Query: 52 WDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
V ++ACG+ HV L S E Y +WG NG+LG GD + R P ++
Sbjct: 435 -------VEEIACGAYHVAVLTSRTEVY--------TWGKGANGRLGHGDTDDRNSPTLV 479
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
E V + CG+ TA + K + + +SMC
Sbjct: 480 EALKDKQ---VKSIACGTNFTATICLHKWVSGVDQSMC 514
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 13/110 (11%)
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G +L+P+ + E + + ++ CG H ++V+ G+++SWG E G L
Sbjct: 227 GMKMDSLLPKAL-ESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESG------GRLGHG 279
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG 272
D + P LI + VACG HT VT G L++WG G
Sbjct: 280 VDSDVLHPKLIDSLSNTNIEL-----VACGEYHTCAVTLSG-DLYTWGDG 323
>gi|428174549|gb|EKX43444.1| hypothetical protein GUITHDRAFT_61168, partial [Guillardia theta
CCMP2712]
Length = 308
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 29/221 (13%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V ACG H VAL G YSWG NG LG G+ +S+L PK ++ S
Sbjct: 1 VGAACGKLHTVALTEEGRV--------YSWGC-ANGALGHGNSKSQLLPKALDRPLIYSM 51
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
++ + CG FHT + + WT+G + GQLGHG ++ +P +V+ L +
Sbjct: 52 PSITTIACGEFHTLAVGQ--------DGTLWTWGRNQYGQLGHGDCKTHKLPRRVEALEK 103
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ + G H+ V++ A V+++G L + + + A D +S + SG
Sbjct: 104 KI-CIKAAAGGQHSLVLTEANKVYAFGSNVFGQLGLESKVKYSAAPDIVSRLRRSG---- 158
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ CG +H++ + +L+SWGR G LG G
Sbjct: 159 ------VCHITCGYSHSMALLKS-EQLYSWGRNDCGQLGLG 192
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 94/209 (44%), Gaps = 16/209 (7%)
Query: 3 QIC-SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+IC AGG SL + A ++ +G+ E + S P V V
Sbjct: 104 KICIKAAAGGQHSLVLTEANKVYAFGSNVFGQLGLES--KVKYSAAPDIVSRLRRSGVCH 161
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ CG H +AL+ K E L YSWG N+ GQLGLG S P+ + F +
Sbjct: 162 ITCGYSHSMALL------KSEQL--YSWGRNDCGQLGLGHYRSSPVPEHLTMFKKSQ--- 210
Query: 122 VYEVTCGSFHT-ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V +++CG H A ++ P +T+G GE GQLGH S VP+ V+ L
Sbjct: 211 VQQISCGYDHNIAFVSEYAGPGVPPLEKVYTWGRGEEGQLGHDELYSRCVPKVVQTLLAR 270
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+ +V G F ++ + A +++WG +
Sbjct: 271 G-IRAVAAGGFSSAAIDEAKQLYTWGCSR 298
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 21/166 (12%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S +C + G S+A+ + L+ WG D G SS P + F V +
Sbjct: 157 SGVCHITCGYSHSMALLKSEQLYSWGR---NDCGQLGLGHYRSSPVPEHLTMFKKSQVQQ 213
Query: 62 VACGSEHVVALVSAGETYKGEDL----VCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
++CG +H +A VS Y G + Y+WG GQLG + SR PK+++T
Sbjct: 214 ISCGYDHNIAFVS---EYAGPGVPPLEKVYTWGRGEEGQLGHDELYSRCVPKVVQTLLAR 270
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
+ V G F +A + K+ +T+G GQLGHG
Sbjct: 271 ---GIRAVAAGGFSSAAIDEAKQ--------LYTWGCSREGQLGHG 305
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 119/296 (40%), Gaps = 51/296 (17%)
Query: 10 GGMMSLAIDNAGALWMWG--NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSE 67
G + ++A+ G ++ WG N L +++ L+ P+ + ++ +ACG
Sbjct: 6 GKLHTVALTEEGRVYSWGCANGALGHGNSKS--QLLPKALDRPLI-YSMPSITTIACGEF 62
Query: 68 HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC 127
H +A+ G+D ++WG N GQLG GD ++ P+ +E + +
Sbjct: 63 HTLAV--------GQDGTLWTWGRNQYGQLGHGDCKTHKLPRRVEALEKK---ICIKAAA 111
Query: 128 GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-HGTTQSALVPEQVKELPQYVYLVSV 186
G H+ +LT + + FG GQLG + + P+ V L + + +
Sbjct: 112 GGQHSLVLTEANK--------VYAFGSNVFGQLGLESKVKYSAAPDIVSRLRR-SGVCHI 162
Query: 187 DCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD-AISPILISGNGPHGPKFQD 245
CG H+ + + ++SWG RN+ G + S H F+
Sbjct: 163 TCGYSHSMALLKSEQLYSWG--------------RNDCGQLGLGHYRSSPVPEHLTMFKK 208
Query: 246 P--VQVACGAAHTVLVTDDGY--------KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
Q++CG H + + K+++WGRG G LG + P +V
Sbjct: 209 SQVQQISCGYDHNIAFVSEYAGPGVPPLEKVYTWGRGEEGQLGHDELYSRCVPKVV 264
>gi|195449389|ref|XP_002072053.1| GK22640 [Drosophila willistoni]
gi|194168138|gb|EDW83039.1| GK22640 [Drosophila willistoni]
Length = 1261
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 105/258 (40%), Gaps = 34/258 (13%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
+ G SLA+ N G ++ WG+ ++ + P + HG + +ACG
Sbjct: 132 IACGNEHSLALTNDGTIYSWGSNRYGQLGMSEPENMSNCHFPMHLTSIHGIPIATIACGG 191
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
H + + Y WG NN GQLGL D R P + T P V V
Sbjct: 192 NHCFLISKSSAVY--------GWGRNNRGQLGLNDLSDRPYPTELTTLR---PCGVRYVA 240
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSV 186
CG + LTH+ +T G G +GQLGHG +AL P +V +L + + V
Sbjct: 241 CGDEFSVFLTHK--------GALFTCGDGTHGQLGHGNLSNALAPFKVMKL-RDKPVTQV 291
Query: 187 DCGLFHT-SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
C +T + V S G ++ +G + P G ISP L + + F D
Sbjct: 292 ACAKHYTLAFVPSIGQLYGFGQLGKIYTLPGKI-----NGPWISPTLTANSA-----FND 341
Query: 246 PV---QVACGAAHTVLVT 260
V Q+ G +V+ T
Sbjct: 342 AVIVNQIFSGGLKSVVTT 359
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 96/225 (42%), Gaps = 35/225 (15%)
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+A G + + L + G+ Y+ E +GQ+ + SRL P + QD
Sbjct: 30 IAFGDRYTLFLTAKGKVYECE----------THGQVHNTRKRSRLSPFRLVAGLQD--IE 77
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V + CGS H+ +LT + ++G+ + GQLG T ++ VP VK +
Sbjct: 78 VSAIACGSSHSLVLTK--------SGVVMSWGVNDCGQLGQ--TTNSRVPTMVKVPDKKP 127
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPH 239
V + CG H+ +++ G ++SWG + LG+ +++ ++ I H
Sbjct: 128 LFVQIACGNEHSLALTNDGTIYSWGSNRYGQLGMSEPENMSNCHFPMHLTSI-------H 180
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
G +ACG H L++ ++ WGR G LG D
Sbjct: 181 GIPI---ATIACGGNHCFLISKSS-AVYGWGRNNRGQLGLNDLSD 221
>gi|432863735|ref|XP_004070156.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like [Oryzias
latipes]
Length = 1080
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 96/240 (40%), Gaps = 64/240 (26%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK------------------------- 80
FTP + G TV +VACGS+H V L G+ Y
Sbjct: 111 FTPRSLEALSGITVTQVACGSQHTVVLSKDGQVYTWGQNSRGQLGLGKEGCSSISSPQCV 170
Query: 81 --------------GEDLVCYS-------WGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
G+ S WG N+ GQLGLGD R P ++ N
Sbjct: 171 RSLSSMPVVQVSAGGDHSFALSVSGSVFGWGRNDCGQLGLGDTTDRETPTLVHYLNMKK- 229
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V+ CG HTA+LT ++ +TFG G GQLGH + ++AL P V EL
Sbjct: 230 -TVF-AACGKDHTAVLT--------MDGTVFTFGSGHYGQLGHNSFRNALCPRLVAEL-W 278
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS-PILISGNGP 238
+ + CG +HT V++ V+S+G + L P R E + P+ + GP
Sbjct: 279 GAKVTKIACGRYHTLVLTDHMKVYSFGCNEHGQLGP-----REETHPCVPLPVQLPREGP 333
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 27/178 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V AGG S A+ +G+++ WG D G TP+ V + V A
Sbjct: 178 VVQVSAGGDHSFALSVSGSVFGWGR---NDCGQLGLGDTTDRETPTLVHYLNMKKTVFAA 234
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA-- 121
CG +H L G +++G+ + GQLG + L P+++ W
Sbjct: 235 CGKDHTAVLTMDG--------TVFTFGSGHYGQLGHNSFRNALCPRLVAEL-----WGAK 281
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V ++ CG +HT +LT + ++FG E+GQLG VP V +LP+
Sbjct: 282 VTKIACGRYHTLVLTDHMK--------VYSFGCNEHGQLGPREETHPCVPLPV-QLPR 330
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + V CG HT V+S G V++WG + GLG +S++ + ++S + +
Sbjct: 122 ITVTQVACGSQHTVVLSKDGQVYTWGQNSRGQLGLGKEGCSSISSPQCVRSLSSMPV--- 178
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
VQV+ G H+ ++ G ++ WGR G LG G T D P +V +
Sbjct: 179 ----------VQVSAGGDHSFALSVSG-SVFGWGRNDCGQLGLGDTTDRETPTLVHY 224
>gi|449665602|ref|XP_002165309.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like, partial
[Hydra magnipapillata]
Length = 731
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 29/191 (15%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80
G ++ WG+ F S P V D ++++ G H +AL +G
Sbjct: 85 GHVFSWGSNEFGQVGINSKFHKYVS--PQLVRDLSNCPIIQICAGGHHSLALTISG---- 138
Query: 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKR 140
++WG N+ GQLGLGD++ RL P I++ N V ++CG H+ LLT R
Sbjct: 139 ----TIFAWGKNSFGQLGLGDQQDRLFPTKIQSMNGKH---VRYISCGEEHSVLLTSAGR 191
Query: 141 PNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL---PQYVYLVSVDCGLFHT-SVV 196
+TFG G +GQLGH + +P+ V +L P + + CG HT + V
Sbjct: 192 --------VYTFGCGSSGQLGHNEFEDQFIPKMVVDLMGTP----VTQIACGRKHTLAHV 239
Query: 197 SSAGDVWSWGM 207
++S+G+
Sbjct: 240 MKGNKLYSFGL 250
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 115/266 (43%), Gaps = 46/266 (17%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVAL-----VSAGETYKGE-----------DLVCYSWGA 91
P+P+ + K+ CG H + L ++G Y GE D +SWG+
Sbjct: 33 PTPILVNTSFCIEKIICGWNHTLFLSGGLVYASGLNYDGELGISNENTEVPDGHVFSWGS 92
Query: 92 NNNGQLGLGDRESR-LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCW 150
N GQ+G+ + + + P+++ S + ++ G H+ LT + +
Sbjct: 93 NEFGQVGINSKFHKYVSPQLVRDL---SNCPIIQICAGGHHSLALT--------ISGTIF 141
Query: 151 TFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
+G GQLG G Q L P +++ + ++V +S CG H+ +++SAG V+++G
Sbjct: 142 AWGKNSFGQLGLGDQQDRLFPTKIQSMNGKHVRYIS--CGEEHSVLLTSAGRVYTFG--- 196
Query: 210 GLGLC-PNASLTRNEAGDAISPILISGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLW 267
C + L NE D P ++ PV Q+ACG HT+ G KL+
Sbjct: 197 ----CGSSGQLGHNEFEDQFIPKMVVD------LMGTPVTQIACGRKHTLAHVMKGNKLY 246
Query: 268 SWGRGRSGVLGTGKTIDFFAPAIVLW 293
S+G G LG G P + W
Sbjct: 247 SFGLNVKGQLGIGSYEKARIPMLTTW 272
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 83/172 (48%), Gaps = 30/172 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL---VSSFTPSPVWDFHGHTV 59
QIC AGG SLA+ +G ++ WG ++ G L P+ + +G V
Sbjct: 123 QIC---AGGHHSLALTISGTIFAWG------KNSFGQLGLGDQQDRLFPTKIQSMNGKHV 173
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++CG EH V L SAG Y++G ++GQLG + E + PK++ +P
Sbjct: 174 RYISCGEEHSVLLTSAGRV--------YTFGCGSSGQLGHNEFEDQFIPKMVVDL-MGTP 224
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
V ++ CG HT L H + N + ++FGL GQLG G+ + A +P
Sbjct: 225 --VTQIACGRKHT--LAHVMKGNKL-----YSFGLNVKGQLGIGSYEKARIP 267
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 104/229 (45%), Gaps = 37/229 (16%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIE-TFNQ----DSPWAVYEVTCGSFHTALLTH---- 137
YSWG N QLG + + + + I+ TF ++ + + ++ CG HT L+
Sbjct: 4 YSWGCNAYNQLGFKNLQEKDENEPIDNTFPTPILVNTSFCIEKIICGWNHTLFLSGGLVY 63
Query: 138 ------------RKRPNDMLESMCWTFGLGENGQLGHGTTQSALV-PEQVKELPQYVYLV 184
++ + +++G E GQ+G + V P+ V++L ++
Sbjct: 64 ASGLNYDGELGISNENTEVPDGHVFSWGSNEFGQVGINSKFHKYVSPQLVRDLSN-CPII 122
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI-SGNGPHGPKF 243
+ G H+ ++ +G +++WG + G L + D + P I S NG H
Sbjct: 123 QICAGGHHSLALTISGTIFAWG-KNSFG-----QLGLGDQQDRLFPTKIQSMNGKHVR-- 174
Query: 244 QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
++CG H+VL+T G +++++G G SG LG + D F P +V+
Sbjct: 175 ----YISCGEEHSVLLTSAG-RVYTFGCGSSGQLGHNEFEDQFIPKMVV 218
>gi|357493985|ref|XP_003617281.1| Lateral signaling target protein-like protein [Medicago truncatula]
gi|355518616|gb|AET00240.1| Lateral signaling target protein-like protein [Medicago truncatula]
Length = 1124
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 128/290 (44%), Gaps = 31/290 (10%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ +G L+ WGN + G + VS + P V G V ++CG
Sbjct: 389 VACGEYHTCAVTLSGDLYTWGNGAY-NYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCG 447
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ +++G G LG GDR+S P+ +E+
Sbjct: 448 PWHTAVVTSAGQ--------LFTFGDGTFGALGHGDRKSVSLPREVESLKG---LRTMRA 496
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
+CG +HTA ++ ++ +T+G G+ G+LGHG ++ LVP V +
Sbjct: 497 SCGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVALVEHN- 555
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V CG T ++++G V++ G P N D P + G
Sbjct: 556 -FCQVACGHSLTVALTTSGHVYAMG-------SPVYGQLGNPQADGKLPTRVEGKLLKS- 606
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F + ++ACGA H ++T ++++WG+G +G LG G T D P +V
Sbjct: 607 -FVE--EIACGAYHVAVLTLRN-EVYTWGKGANGRLGHGDTDDRNNPTLV 652
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 106/248 (42%), Gaps = 47/248 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +ACG H + GE + SWG + G+LG G L PK+I+ + +
Sbjct: 334 VQNIACGGRHAALVTKQGEIF--------SWGEESGGRLGHGVDSDVLHPKLIDALSNTN 385
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG--ENGQLGHGTTQSALVPEQVKE 176
+ V CG +HT +T L +T+G G G LGHG S VP++V
Sbjct: 386 ---IELVACGEYHTCAVT--------LSGDLYTWGNGAYNYGLLGHGNQVSHWVPKRVNG 434
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILIS 234
+ +++ + CG +HT+VV+SAG ++++ G LG S++ +++ +
Sbjct: 435 PLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSVSLPREVESLKGLRT- 493
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGKTI 283
++ +CG HT V + KL++WG G G LG G
Sbjct: 494 ------------MRASCGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKE 541
Query: 284 DFFAPAIV 291
P V
Sbjct: 542 AKLVPTCV 549
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 102/264 (38%), Gaps = 37/264 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+ + G + + +AG L+ +G+ G S P V G ++
Sbjct: 440 HVSYISCGPWHTAVVTSAGQLFTFGDGTF---GALGHGDRKSVSLPREVESLKGLRTMRA 496
Query: 63 ACGSEHVVALVSAGETYKGEDLV-------CYSWGANNNGQLGLGDRESRLRPKIIETFN 115
+CG H A+V E G ++WG + G+LG GD+E++L P +
Sbjct: 497 SCGVWHTAAVV---EVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVALVE 553
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
+ +V CG T LT + G GQLG+ L P +V+
Sbjct: 554 HN----FCQVACGHSLTVALT--------TSGHVYAMGSPVYGQLGNPQADGKL-PTRVE 600
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISG 235
++ + CG +H +V++ +V++WG KG N L + D +P L+
Sbjct: 601 GKLLKSFVEEIACGAYHVAVLTLRNEVYTWG--KG----ANGRLGHGDTDDRNNPTLVD- 653
Query: 236 NGPHGPKFQDPVQVACGAAHTVLV 259
K + +ACG T +
Sbjct: 654 ----ALKDKHVKSIACGTNFTAAI 673
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 36/158 (22%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN-------CPLPD----SSTEGGFSLVSSFTPSPV 51
C V G +++A+ +G ++ G+ P D + EG L+ SF
Sbjct: 555 NFCQVACGHSLTVALTTSGHVYAMGSPVYGQLGNPQADGKLPTRVEG--KLLKSF----- 607
Query: 52 WDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
V ++ACG+ HV L E Y +WG NG+LG GD + R P ++
Sbjct: 608 -------VEEIACGAYHVAVLTLRNEVY--------TWGKGANGRLGHGDTDDRNNPTLV 652
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
+ V + CG+ TA + K + + +SMC
Sbjct: 653 DALKDKH---VKSIACGTNFTAAICLHKWVSGVDQSMC 687
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 161 GHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220
G G +L P+ + E + + ++ CG H ++V+ G+++SWG E G L
Sbjct: 313 GLGVKIDSLFPKAL-ESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESG------GRLG 365
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLG 278
D + P LI + VACG HT VT G L++WG G G+LG
Sbjct: 366 HGVDSDVLHPKLIDALSNTNIEL-----VACGEYHTCAVTLSG-DLYTWGNGAYNYGLLG 419
Query: 279 TGKTIDFFAPAIVLWP 294
G + + P V P
Sbjct: 420 HGNQVSHWVPKRVNGP 435
>gi|449268693|gb|EMC79542.1| X-linked retinitis pigmentosa GTPase regulator, partial [Columba
livia]
Length = 719
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 100/212 (47%), Gaps = 40/212 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPS-PVWDFHGHTVVK 61
+I + AG S A+ G L++WG+ ++EG L S P G V
Sbjct: 136 KIKQLAAGSYTSAAVTEDGQLFVWGD------NSEGQIGLADEACVSVPCQVDVGKPVSS 189
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL------GDRESRLRPKIIETFN 115
++CG H + GE Y++G NG+LGL +R + P I+E N
Sbjct: 190 ISCGYYHSALITGDGE--------LYTFGEPENGKLGLLPEQLKNNRVPQPVPGIMEKVN 241
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-TQSALVPEQV 174
+ V CG HT +LT E+ +TFGLG+ GQLGHGT VP+ V
Sbjct: 242 K--------VACGGEHTVVLT---------ETDVYTFGLGQYGQLGHGTFIFETSVPKSV 284
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
K L ++ + ++ CG HT+VV+ G ++++G
Sbjct: 285 KHLRRH-KICNITCGENHTAVVAENGLMFTFG 315
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 121/282 (42%), Gaps = 46/282 (16%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHTVVKVA 63
+ G + + G L+M+G S+ G L S T P+ V
Sbjct: 35 ISCGDEHTAIVTGNGKLYMFG------SNNWGQLGLGSKNTVSKPTCVKALKPEKTKLAV 88
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H + G Y + G N+ GQLGLGD E R +I F +
Sbjct: 89 CGRNHTLVYTEKGNVY--------AAGGNSEGQLGLGDTEERSTFHLISFFTNQ--HKIK 138
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
++ GS+ +A +T + + +G GQ+G VP QV ++ + V
Sbjct: 139 QLAAGSYTSAAVTE--------DGQLFVWGDNSEGQIGLADEACVSVPCQV-DVGKPV-- 187
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGP 241
S+ CG +H+++++ G+++++G E G LGL P L N + I+ N
Sbjct: 188 SSISCGYYHSALITGDGELYTFGEPENGKLGLLPE-QLKNNRVPQPVPGIMEKVN----- 241
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
+VACG HTV++T+ ++++G G+ G LG G I
Sbjct: 242 ------KVACGGEHTVVLTET--DVYTFGLGQYGQLGHGTFI 275
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 70/164 (42%), Gaps = 29/164 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF--SLVSSFTPSPVWDFHGHTVVK 61
+ S+ G S I G L+ +G P++ G L ++ P PV V K
Sbjct: 187 VSSISCGYYHSALITGDGELYTFGE---PENGKLGLLPEQLKNNRVPQPVPGIM-EKVNK 242
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR--ESRLRPKIIETFNQDSP 119
VACG EH V L Y++G GQLG G E+ + PK ++ +
Sbjct: 243 VACGGEHTVVLTETD---------VYTFGLGQYGQLGHGTFIFETSV-PKSVKHLRR--- 289
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
+ +TCG HTA++ + +TFG G +G+LG G
Sbjct: 290 HKICNITCGENHTAVVAEN--------GLMFTFGDGRHGKLGLG 325
>gi|302784100|ref|XP_002973822.1| hypothetical protein SELMODRAFT_100519 [Selaginella moellendorffii]
gi|300158154|gb|EFJ24777.1| hypothetical protein SELMODRAFT_100519 [Selaginella moellendorffii]
Length = 413
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 142/357 (39%), Gaps = 104/357 (29%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV--SSFTPSPVWDFHGHTVVKV 62
CSV GG +L + + G ++ G +SS + G L SSF P V F V +
Sbjct: 64 CSVSCGGAHTLILTDKGRVFATG----LNSSGQLGVPLKRESSFDPVEVHGFP-DPCVHI 118
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR--LRPKIIETF------ 114
A G H A+ S+GETY WG N+ GQLGLG R + P+ +E+
Sbjct: 119 AAGRYHSAAITSSGETYV--------WGRNSEGQLGLGKRAKSVYITPQKMESLAGMRLK 170
Query: 115 ---------------NQDSPWAVYEVTC-------GSF--------HTALLTH------- 137
Q W C G F +T + H
Sbjct: 171 ALALGTDHSLGLAETGQVLSWGTNRFGCLGHGEMTGFFDFFKDTNEYTPRIIHCLEKLQI 230
Query: 138 RKRPNDMLESMC-------WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
R ++ S C ++FG G QLG G A P + +LP+ + S+ CG
Sbjct: 231 RSVSAGLVHSACADDSGTIYSFGQGSMCQLGLGNNNDASQPCPIPDLPR---VSSISCGG 287
Query: 191 FHTSVVSSAGDVWSWGMEK----GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 246
+HT ++ GD+++WG + G G ++ R E +++ +S
Sbjct: 288 YHTGAITQDGDIYTWGSNEHGCLGSGFRASSKPLRLE---SLAEAFMS------------ 332
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRS------------GVLGTGKTIDFFAPAIV 291
+++CG HT ++ DGY ++SWG G S G LG G DFF P +
Sbjct: 333 -EISCGWKHTAAIS-DGY-IFSWGWGGSYGTYATQAESSGGQLGVGTDFDFFEPVPI 386
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 87/201 (43%), Gaps = 28/201 (13%)
Query: 89 WGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESM 148
WG + G+LGL + S+ P + P + V+CG HT +LT + R
Sbjct: 33 WGNGDQGRLGLSESGSQFEPVLCRALESHEPCS---VSCGGAHTLILTDKGR-------- 81
Query: 149 CWTFGLGENGQLGHG-TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM 207
+ GL +GQLG +S+ P +V P V + G +H++ ++S+G+ + WG
Sbjct: 82 VFATGLNSSGQLGVPLKRESSFDPVEVHGFPDPC--VHIAAGRYHSAAITSSGETYVWGR 139
Query: 208 --EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
E LGL G + I+ +A G H++ + + G +
Sbjct: 140 NSEGQLGL-----------GKRAKSVYITPQKMESLAGMRLKALALGTDHSLGLAETG-Q 187
Query: 266 LWSWGRGRSGVLGTGKTIDFF 286
+ SWG R G LG G+ FF
Sbjct: 188 VLSWGTNRFGCLGHGEMTGFF 208
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 114/319 (35%), Gaps = 86/319 (26%)
Query: 19 NAGALW--MWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAG 76
AG W +WGN D G S F P H V+CG H + L G
Sbjct: 24 KAGKRWVALWGN---GDQGRLGLSESGSQFEPVLCRALESHEPCSVSCGGAHTLILTDKG 80
Query: 77 ETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL 135
++ G N++GQLG+ RES P + F P + G +H+A +
Sbjct: 81 RV--------FATGLNSSGQLGVPLKRESSFDPVEVHGF----PDPCVHIAAGRYHSAAI 128
Query: 136 THR-----------------KRPNDM------LESMC------------WTFGLGENGQ- 159
T KR + +ES+ + GL E GQ
Sbjct: 129 TSSGETYVWGRNSEGQLGLGKRAKSVYITPQKMESLAGMRLKALALGTDHSLGLAETGQV 188
Query: 160 ----------LGHG--TTQSALVPEQVKELPQYVYLV------SVDCGLFHTSVVSSAGD 201
LGHG T + + P+ ++ + SV GL H++ +G
Sbjct: 189 LSWGTNRFGCLGHGEMTGFFDFFKDTNEYTPRIIHCLEKLQIRSVSAGLVHSACADDSGT 248
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
++S+G +C L DA P I P ++CG HT +T
Sbjct: 249 IYSFGQGS---MC---QLGLGNNNDASQPCPI-------PDLPRVSSISCGGYHTGAITQ 295
Query: 262 DGYKLWSWGRGRSGVLGTG 280
DG +++WG G LG+G
Sbjct: 296 DG-DIYTWGSNEHGCLGSG 313
>gi|126330678|ref|XP_001365078.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Monodelphis
domestica]
Length = 1051
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 135/296 (45%), Gaps = 46/296 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
I V G SLA+ + G L+ WG + L ++TE ++ P + + +
Sbjct: 86 HIIHVACGESHSLALSDQGQLFSWGAGSDGQLGHTTTEDSVAI-----PRLIKKLNQQMI 140
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDS 118
++V+CG+ H +AL + G+ + +WG N +GQLGLG + S+ P+ +++ +
Sbjct: 141 LQVSCGNWHCMALAADGQFF--------TWGQNRHGQLGLGKEFPSQASPQRVKSL-EGI 191
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P A +V G H+ L+ L + +G GQLG P VK L
Sbjct: 192 PLA--QVAAGGAHSFALS--------LSGAVFGWGRNNAGQLGLSDETDRQSPCHVK-LL 240
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILISG 235
+ +V + CG HT+V++ +G V+++G L + D ++P + + G
Sbjct: 241 RTQKVVYISCGEEHTAVLTKSGGVFTFGAGSF------GQLGHDSMNDEVNPRRVLELMG 294
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 295 S--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 342
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 112/241 (46%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
++ +VACG H + L+ GE Y + G N GQLG +RE +I +Q
Sbjct: 36 SIKEVACGGNHSIFLLEDGEVY--------TCGLNTKGQLG-HEREGNKPEQIGALADQH 86
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ + + +++G G +GQLGH TT+ S +P +K+
Sbjct: 87 ----IIHVACGESHSLALSDQGQ--------LFSWGAGSDGQLGHTTTEDSVAIPRLIKK 134
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLG--LCPNASLTRNEAGDAISP 230
L Q + ++ V CG +H +++ G ++WG + GLG AS R ++ + I P
Sbjct: 135 LNQQM-ILQVSCGNWHCMALAADGQFFTWGQNRHGQLGLGKEFPSQASPQRVKSLEGI-P 192
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WGR +G LG D +P
Sbjct: 193 L---------------AQVAAGGAHSFALSLSG-AVFGWGRNNAGQLGLSDETDRQSPCH 236
Query: 291 V 291
V
Sbjct: 237 V 237
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 25/174 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFS-LVSSFTPSPVWDFHGHTVVKV 62
+ V AGG S A+ +GA++ WG +++ + G S +P V VV +
Sbjct: 193 LAQVAAGGAHSFALSLSGAVFGWGR----NNAGQLGLSDETDRQSPCHVKLLRTQKVVYI 248
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWA 121
+CG EH L +G + ++GA + GQLG + P+ ++E +
Sbjct: 249 SCGEEHTAVLTKSGGVF--------TFGAGSFGQLGHDSMNDEVNPRRVLELMGSE---- 296
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V ++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 VTQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 343
>gi|444915470|ref|ZP_21235602.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
gi|444713401|gb|ELW54301.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
Length = 852
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 119/299 (39%), Gaps = 50/299 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S I V AG SLA+ G +W WG + S G + TP V VV
Sbjct: 239 LSSIKRVAAGDGYSLAVHGDGTVWAWG---INSSGQLGDGTTTDRLTPGRVKGLS--EVV 293
Query: 61 KVAC------GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
+V+ GS HV+A+ +G+ V ++WG N +GQLG G RL P +
Sbjct: 294 EVSAAKYSLLGSAHVLAV-------RGDGTV-WAWGNNGSGQLGDGTTTDRLTPVQVSEL 345
Query: 115 NQDSPWAV-----YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
+ AV + GS+ A+ + W +G GQLG GTT S
Sbjct: 346 DGVKAIAVGNSFPLSNSNGSYSLAVRG---------DGTVWAWGSNSTGQLGDGTTISRS 396
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
P QV L + +V H + G VWSWG N L +
Sbjct: 397 RPAQVNALSG---ITAVSASSDHALAMRDDGTVWSWGKNT------NGKLGDETTAHRLI 447
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
P+ + G VA G +H+V V +DG K W+WG G+LG G F P
Sbjct: 448 PVQVHG-------LSGVRSVAAGESHSVSVREDG-KAWAWGYRGMGLLGDGAMFLSFVP 498
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 126/298 (42%), Gaps = 52/298 (17%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V G +L + G +W WG P+ + G ++ P PV + VA
Sbjct: 144 AVAVGTQHTLLLRPDGTVWAWG----PNDYGQLGDGTTTNR-PVPVQVGGLSGIRAVAAS 198
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
S+H +A+ +D ++WG N++GQLG G RL P + + ++ V
Sbjct: 199 SDHSLAVR--------DDGTVWAWGINSSGQLGDGTTNDRLTPVQVAGLS-----SIKRV 245
Query: 126 TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVS 185
G ++ L H + W +G+ +GQLG GTT L P +VK L + V + +
Sbjct: 246 AAGDGYS-LAVHG-------DGTVWAWGINSSGQLGDGTTTDRLTPGRVKGLSEVVEVSA 297
Query: 186 VDCGLF---HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
L H V G VW+WG G G + + T D ++P+ +S +
Sbjct: 298 AKYSLLGSAHVLAVRGDGTVWAWG-NNGSGQLGDGTTT-----DRLTPVQVS-------E 344
Query: 243 FQDPVQVACG---------AAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+A G ++++ V DG +W+WG +G LG G TI PA V
Sbjct: 345 LDGVKAIAVGNSFPLSNSNGSYSLAVRGDG-TVWAWGSNSTGQLGDGTTISRSRPAQV 401
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 126/300 (42%), Gaps = 46/300 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S I +V A SLA+ + G +W WG + S G + TP V ++
Sbjct: 189 LSGIRAVAASSDHSLAVRDDGTVWAWG---INSSGQLGDGTTNDRLTPVQVAGLS--SIK 243
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+VA G + +A+ D ++WG N++GQLG G RL P ++ ++
Sbjct: 244 RVAAGDGYSLAVHG--------DGTVWAWGINSSGQLGDGTTTDRLTPGRVKGLSE---- 291
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V EV+ + +LL + W +G +GQLG GTT L P QV EL
Sbjct: 292 -VVEVSAAKY--SLLGSAHVLAVRGDGTVWAWGNNGSGQLGDGTTTDRLTPVQVSEL-DG 347
Query: 181 VYLVSV-------DCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG--DAISPI 231
V ++V + ++ V G VW+WG L +++R+ +A+S I
Sbjct: 348 VKAIAVGNSFPLSNSNGSYSLAVRGDGTVWAWGSNSTGQLGDGTTISRSRPAQVNALSGI 407
Query: 232 LISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V+ + H + + DDG +WSWG+ +G LG T P V
Sbjct: 408 ---------------TAVSASSDHALAMRDDG-TVWSWGKNTNGKLGDETTAHRLIPVQV 451
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 117/291 (40%), Gaps = 45/291 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + + G SLA+ LW+WG+ L D G S + PS + D V
Sbjct: 504 LTATAQIASHGNRSLAVKEDNTLWVWGSSSLGD---LGDGSTGAHPVPSSILD----DVK 556
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+++ +A+ + G ++WG+N+ GQLG G +RL P +
Sbjct: 557 AVAAGNDYSLAVRNNGS--------LWAWGSNSIGQLGDGSTTNRLTPVPVNGLEN---- 604
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
SF +L + W +GL GQLG G+T + P V L
Sbjct: 605 --VVGAAASFSVSLALRS-------DGTVWAWGLNSVGQLGDGSTINRSTPGPVGGL--- 652
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
V++V V H+ + + G VW+WG + L + P+ +SG
Sbjct: 653 VHIVGVATSGGHSLALRNDGTVWAWGGNH------DGQLGDGTTTNQPKPVQVSG----- 701
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V+ A + V D +W+WG SG LG G T D P +V
Sbjct: 702 ---LSGVKAVAAAIVSSAVVRDNGTVWAWGDNYSGQLGDGTTTDRLTPVLV 749
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 126/302 (41%), Gaps = 48/302 (15%)
Query: 1 MSQICSVKA------GGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDF 54
+S++ V A G LA+ G +W WGN S G + TP V +
Sbjct: 289 LSEVVEVSAAKYSLLGSAHVLAVRGDGTVWAWGNN---GSGQLGDGTTTDRLTPVQVSEL 345
Query: 55 HGHTVVKVACGSEHVVALVSAGETY----KGEDLVCYSWGANNNGQLGLGDRESRLRPKI 110
G V +A G+ L ++ +Y +G+ V ++WG+N+ GQLG G SR RP
Sbjct: 346 DG--VKAIAVGNSF--PLSNSNGSYSLAVRGDGTV-WAWGSNSTGQLGDGTTISRSRPAQ 400
Query: 111 IETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALV 170
+ + + V+ S H L R + W++G NG+LG TT L+
Sbjct: 401 VNALS-----GITAVSASSDHA--LAMRD------DGTVWSWGKNTNGKLGDETTAHRLI 447
Query: 171 PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP 230
P QV L + SV G H+ V G W+WG +G+GL + ++ + P
Sbjct: 448 PVQVHGLSG---VRSVAAGESHSVSVREDGKAWAWGY-RGMGLLGDGAMFL-----SFVP 498
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ G Q+A ++ V +D LW WG G LG G T P+
Sbjct: 499 VQTMG-------LTATAQIASHGNRSLAVKED-NTLWVWGSSSLGDLGDGSTGAHPVPSS 550
Query: 291 VL 292
+L
Sbjct: 551 IL 552
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 127/324 (39%), Gaps = 68/324 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---------------CPLPDSSTEGGFSLVSS 45
+ + +V AG SLA+ N G+LW WG+ P+P + E +S
Sbjct: 552 LDDVKAVAAGNDYSLAVRNNGSLWAWGSNSIGQLGDGSTTNRLTPVPVNGLENVVGAAAS 611
Query: 46 FTPS-------PVWDFHGHTVVKVACGSE-------------HVVALVSAGETYKG--ED 83
F+ S VW + ++V ++ GS H+V + ++G D
Sbjct: 612 FSVSLALRSDGTVWAWGLNSVGQLGDGSTINRSTPGPVGGLVHIVGVATSGGHSLALRND 671
Query: 84 LVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPND 143
++WG N++GQLG G T NQ P V ++ A + D
Sbjct: 672 GTVWAWGGNHDGQLGDG-----------TTTNQPKPVQVSGLSGVKAVAAAIVSSAVVRD 720
Query: 144 MLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVW 203
W +G +GQLG GTT L P V L L S G H + + G VW
Sbjct: 721 --NGTVWAWGDNYSGQLGDGTTTDRLTPVLVSGLSGVKALAS---GNHHFLALRNDGTVW 775
Query: 204 SWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
+WG L R+ +P+ + G D +A G H++ V DG
Sbjct: 776 AWGDNYYSQLGDGTRTQRS------TPVQVRG-------LSDVKLIAAGENHSMAVRKDG 822
Query: 264 YKLWSWGRGRSGVLGTGKTIDFFA 287
+W+WG SG LG G +DF A
Sbjct: 823 -TVWTWGLNTSGQLGNG-LLDFSA 844
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 63/154 (40%), Gaps = 27/154 (17%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
DN G +W WG+ S G + TP V G V +A G+ H +AL
Sbjct: 720 DN-GTVWAWGDNY---SGQLGDGTTTDRLTPVLVSGLSG--VKALASGNHHFLALR---- 769
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
D ++WG N QLG G R R P + + V + G H+ +
Sbjct: 770 ----NDGTVWAWGDNYYSQLGDGTRTQRSTPVQVRGLSD-----VKLIAAGENHS--MAV 818
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVP 171
RK + WT+GL +GQLG+G + +P
Sbjct: 819 RK------DGTVWTWGLNTSGQLGNGLLDFSALP 846
>gi|115378347|ref|ZP_01465512.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
gi|310825395|ref|YP_003957753.1| bnr repeat domain-containing protein [Stigmatella aurantiaca
DW4/3-1]
gi|115364660|gb|EAU63730.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
gi|309398467|gb|ADO75926.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
Length = 382
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 114/285 (40%), Gaps = 43/285 (15%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
+ AG SLA+ G++W WG S +L F P PV +V VA G
Sbjct: 37 LSAGDSHSLAVHADGSVWAWGAS---ASGLREEGALSRRFAPVPVPGL--SDIVSVAAGG 91
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
H +A+ + D ++WG N GQLG G +R P + + V V
Sbjct: 92 AHSLAVRA--------DGTLWTWGGNPYGQLGDGTTTARALPVQVAGLS-----GVRAVA 138
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSV 186
G H+ L + W +GL + GQLG GTT L P + +P + SV
Sbjct: 139 TGLGHSLAL--------RADGTVWAWGLNQFGQLGDGTTSQWLTP---RPIPGLSGVRSV 187
Query: 187 DCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 246
G FH+ VV VW+WG G + S +R AI P ++
Sbjct: 188 AAGGFHSLVVRDDDTVWAWGSND-YGELGDGSTSRRAVPRAI------------PGLRNV 234
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
VA G H++ V DG L +WG G LG G + P V
Sbjct: 235 ASVAGGCYHSLAVHADG-TLSAWGLNSYGQLGDGTFSNRATPRPV 278
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 94/212 (44%), Gaps = 35/212 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+S I SV AGG SLA+ G LW WG P L D +T + P V G
Sbjct: 81 LSDIVSVAAGGAHSLAVRADGTLWTWGGNPYGQLGDGTT------TARALPVQVAGLSG- 133
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V VA G H +AL + D ++WG N GQLG G L P+ I +
Sbjct: 134 -VRAVATGLGHSLALRA--------DGTVWAWGLNQFGQLGDGTTSQWLTPRPIPGLS-- 182
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V V G FH+ ++ R +D + W +G + G+LG G+T VP + +
Sbjct: 183 ---GVRSVAAGGFHSLVV----RDDDTV----WAWGSNDYGELGDGSTSRRAVP---RAI 228
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
P + SV G +H+ V + G + +WG+
Sbjct: 229 PGLRNVASVAGGCYHSLAVHADGTLSAWGLNS 260
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 92/232 (39%), Gaps = 38/232 (16%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V ++ G H +A+ + G ++WGA+ +G G R P + +
Sbjct: 35 VPLSAGDSHSLAVHADGS--------VWAWGASASGLREEGALSRRFAPVPVPGLSD--- 83
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ V G H+ + + WT+G GQLG GTT + +P QV L
Sbjct: 84 --IVSVAAGGAHSLAV--------RADGTLWTWGGNPYGQLGDGTTTARALPVQVAGLSG 133
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ +V GL H+ + + G VW+WG+ + L ++P I
Sbjct: 134 ---VRAVATGLGHSLALRADGTVWAWGLNQ------FGQLGDGTTSQWLTPRPI------ 178
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
P VA G H+++V DD +W+WG G LG G T P +
Sbjct: 179 -PGLSGVRSVAAGGFHSLVVRDD-DTVWAWGSNDYGELGDGSTSRRAVPRAI 228
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 86/207 (41%), Gaps = 30/207 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + SV AGG SL + + +W WG+ D G S P + V
Sbjct: 181 LSGVRSVAAGGFHSLVVRDDDTVWAWGSN---DYGELGDGSTSRRAVPRAIPGLR--NVA 235
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G H +A+ + D +WG N+ GQLG G +R P+ + +
Sbjct: 236 SVAGGCYHSLAVHA--------DGTLSAWGLNSYGQLGDGTFSNRATPRPVPGLS----- 282
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-TQSALVPEQVKELPQ 179
V V FH+ L E W +GL G+ G GT ++ + P V P
Sbjct: 283 GVRCVATSFFHSLAL--------RAEGTVWAWGLNGYGEQGDGTASRQSPTPRPV---PG 331
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG 206
++SV G FH+ V++ G V +WG
Sbjct: 332 LSGVLSVATGTFHSLAVNTNGTVSAWG 358
>gi|50418309|gb|AAH77375.1| MGC81587 protein [Xenopus laevis]
Length = 677
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 134/302 (44%), Gaps = 44/302 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF--TPSPVWDFHGHTVVK 61
I +V G +LA+++ G ++ WG+ + + G S+ + P + +V+
Sbjct: 86 IVAVSCGEAHTLALNDKGQVFSWGHA----AHGQIGVSIAEDYIRVPRNIKSLSDIQIVQ 141
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSPW 120
VACG H +AL Y SWG N GQLGLG ++ P+ I++ + P+
Sbjct: 142 VACGHHHSLALSKESNIY--------SWGQNQYGQLGLGSEKRKESAPRHIKSLS-GIPF 192
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
A + G H+ LT + + +G + GQLG P +K L +
Sbjct: 193 A--HIAAGGGHSFALT--------ISGAIFGWGRNKFGQLGLNDETDRSDPALLKSL-RS 241
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILISGNG 237
++ + CG HT+ ++ G V+++G G G L N A ++P + GN
Sbjct: 242 QKIIYICCGEDHTAALTKEGGVFTFG-AGGYG-----QLGHNSASHEVNPRKVFELMGN- 294
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
Q+ACG HT+ +++S+G G +G LG G T + +P++V LT
Sbjct: 295 -------IVTQIACGRQHTLAFVPSSGRIYSFGLGGNGQLGIGSTSNKKSPSMVKGNWLT 347
Query: 298 EE 299
E
Sbjct: 348 HE 349
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 97/239 (40%), Gaps = 37/239 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHT 58
QI V G SLA+ ++ WG + G L S P + G
Sbjct: 138 QIVQVACGHHHSLALSKESNIYSWGQ------NQYGQLGLGSEKRKESAPRHIKSLSGIP 191
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+A G H AL +G + WG N GQLGL D R P ++++
Sbjct: 192 FAHIAAGGGHSFALTISGAI--------FGWGRNKFGQLGLNDETDRSDPALLKSLRSQK 243
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+ + CG HTA LT E +TFG G GQLGH + + P +V EL
Sbjct: 244 ---IIYICCGEDHTAALTK--------EGGVFTFGAGGYGQLGHNSASHEVNPRKVFELM 292
Query: 179 QYVYLVSVDCGLFHT-SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + + CG HT + V S+G ++S+ GL N L + SP ++ GN
Sbjct: 293 GNI-VTQIACGRQHTLAFVPSSGRIYSF------GLGGNGQLGIGSTSNKKSPSMVKGN 344
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 37/199 (18%)
Query: 89 WGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
WG + GQLGLG D E + P+ + F + V +V CG+ HT + + +
Sbjct: 4 WGNASFGQLGLGGIDEEVVIEPRRCDFFINKN---VRDVGCGNRHTGFV--------LDD 52
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T G + GQLGH ++ PEQV L + +V+V CG HT ++ G V+SWG
Sbjct: 53 GTVYTCGCNDLGQLGHDKSRKK--PEQVGALDAQI-IVAVSCGEAHTLALNDKGQVFSWG 109
Query: 207 M----EKGLGLCPN-ASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
+ G+ + + + RN ++S I I VQVACG H++ ++
Sbjct: 110 HAAHGQIGVSIAEDYIRVPRNI--KSLSDIQI-------------VQVACGHHHSLALSK 154
Query: 262 DGYKLWSWGRGRSGVLGTG 280
+ ++SWG+ + G LG G
Sbjct: 155 ES-NIYSWGQNQYGQLGLG 172
>gi|21619468|gb|AAH31624.1| RPGR protein [Homo sapiens]
gi|119579847|gb|EAW59443.1| retinitis pigmentosa GTPase regulator, isoform CRA_c [Homo sapiens]
gi|325464495|gb|ADZ16018.1| retinitis pigmentosa GTPase regulator [synthetic construct]
Length = 480
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 110/235 (46%), Gaps = 37/235 (15%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+ V V ACG H + G Y + G NN GQLGLGD E R
Sbjct: 78 PTCVKALKPEKVKLAACGRNHTLVSTEGGNVY--------ATGGNNEGQLGLGDTEERNT 129
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
+I F S + +++ GS +A LT R + +G GQ+G +
Sbjct: 130 FHVISFFT--SEHKIKQLSAGSNTSAALTEDGR--------LFMWGDNSEGQIGLKNVSN 179
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAG 225
VP+QV + + V +S CG +H++ V++ G+++ +G E G LGL PN L +
Sbjct: 180 VCVPQQVT-IGKPVSWIS--CGYYHSAFVTTDGELYVFGEPENGKLGL-PNQLLGNHRTP 235
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+S I + +QVACG HTV++T++ ++++G G+ G LG G
Sbjct: 236 QLVSEIP-----------EKVIQVACGGEHTVVLTENA--VYTFGLGQFGQLGLG 277
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 126/291 (43%), Gaps = 52/291 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ S + G + + +N G L L D+ F ++S FT H + +++
Sbjct: 100 LVSTEGGNVYATGGNNEGQLG------LGDTEERNTFHVISFFTSE-------HKIKQLS 146
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS AL ED + WG N+ GQ+GL + + P+ + T + W
Sbjct: 147 AGSNTSAALT--------EDGRLFMWGDNSEGQIGLKNVSNVCVPQQV-TIGKPVSW--- 194
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG--HGTTQSALVPEQVKELPQYV 181
++CG +H+A +T + + FG ENG+LG + + P+ V E+P+ V
Sbjct: 195 -ISCGYYHSAFVT--------TDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSEIPEKV 245
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG HT VV + V+++G+ + L L I I
Sbjct: 246 --IQVACGGEHT-VVLTENAVYTFGLGQFGQLGLGTFLFETSEPKVIENI---------- 292
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG--KTIDFFAPAI 290
+ Q ++CG HT L+TD G ++++G GR G LG G + F P +
Sbjct: 293 RDQTISYISCGENHTALITDIGL-MYTFGDGRHGKLGLGLENFTNHFIPTL 342
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 32/217 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + AG S A+ G L+MWG+ +S + G VS+ P G V +
Sbjct: 141 KIKQLSAGSNTSAALTEDGRLFMWGD----NSEGQIGLKNVSNVC-VPQQVTIGKPVSWI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR--ESRLRPKIIETFNQDSPW 120
+CG H + + GE Y +G NG+LGL ++ + P+++ + P
Sbjct: 196 SCGYYHSAFVTTDGELY--------VFGEPENGKLGLPNQLLGNHRTPQLV----SEIPE 243
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V +V CG HT +LT E+ +TFGLG+ GQLG GT +V E +
Sbjct: 244 KVIQVACGGEHTVVLT---------ENAVYTFGLGQFGQLGLGTFLFETSEPKVIENIRD 294
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGL 213
+ + CG HT++++ G ++++G + GLGL
Sbjct: 295 QTISYISCGENHTALITDIGLMYTFGDGRHGKLGLGL 331
>gi|390479661|ref|XP_002762827.2| PREDICTED: LOW QUALITY PROTEIN: X-linked retinitis pigmentosa
GTPase regulator, partial [Callithrix jacchus]
Length = 817
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 37/235 (15%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+ V V ACG H + G Y + G N+ GQLGLGD E R
Sbjct: 78 PTCVKALKPEKVKLAACGRNHTLVSTEGGNVY--------ATGGNDEGQLGLGDTEERTT 129
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
+ F S + +++ GS +A LT R + +G GQ+G +
Sbjct: 130 FHRVSFFT--SQHKIKQLSAGSNTSAALTEDGR--------LFMWGDNSEGQIGLPNILN 179
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAG 225
A VP QV + + V +S CG +H++ V++ G+++ +G + LGL PN L+ +
Sbjct: 180 ACVPHQVT-IGKPVSWIS--CGYYHSAFVTTDGELYIFGESENGKLGL-PNELLSNHRI- 234
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
P L+ P P + +QVACG H+V++T+D ++++G G+ G LG G
Sbjct: 235 ----PQLV----PEIP--EKVIQVACGGEHSVVLTEDA--VYTFGLGQFGQLGLG 277
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 115/260 (44%), Gaps = 52/260 (20%)
Query: 27 GNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVC 86
G L D+ F VS FT H + +++ GS AL ED
Sbjct: 117 GQLGLGDTEERTTFHRVSFFTSQ-------HKIKQLSAGSNTSAALT--------EDGRL 161
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
+ WG N+ GQ+GL + + P + T + W ++CG +H+A +T +
Sbjct: 162 FMWGDNSEGQIGLPNILNACVPHQV-TIGKPVSW----ISCGYYHSAFVT--------TD 208
Query: 147 SMCWTFGLGENGQLG--HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+ FG ENG+LG + + +P+ V E+P+ V + V CG H SVV + V++
Sbjct: 209 GELYIFGESENGKLGLPNELLSNHRIPQLVPEIPEKV--IQVACGGEH-SVVLTEDAVYT 265
Query: 205 WGM----EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT 260
+G+ + GLG + P ++ G + ++CG H L+T
Sbjct: 266 FGLGQFGQLGLGTL---------LFETSEPKVVENIGNKTISY-----ISCGENHAALLT 311
Query: 261 DDGYKLWSWGRGRSGVLGTG 280
D+G ++++G GR G LG G
Sbjct: 312 DNGL-MYTFGDGRHGKLGLG 330
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 103/261 (39%), Gaps = 48/261 (18%)
Query: 19 NAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGET 78
N+GA++++G S ++ P W F V ++CG EH + +
Sbjct: 10 NSGAVFIFGK------------SKIAENIPGKFW-FKNDVAVHLSCGDEHSAVVTGNNK- 55
Query: 79 YKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
Y +G+NN GQLGLG + + +P ++ P V CG HT + T
Sbjct: 56 -------LYVFGSNNWGQLGLGSKSAVSKPTCVKAL---KPEKVKLAACGRNHTLVSTEG 105
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSS 198
+ G + GQLG G T+ +V + + G ++ ++
Sbjct: 106 GN--------VYATGGNDEGQLGLGDTEERTTFHRVSFFTSQHKIKQLSAGSNTSAALTE 157
Query: 199 AGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ-VACGAAHTV 257
G ++ WG N G P +++ PH PV ++CG H+
Sbjct: 158 DGRLFMWG--------------DNSEGQIGLPNILNACVPHQVTIGKPVSWISCGYYHSA 203
Query: 258 LVTDDGYKLWSWGRGRSGVLG 278
VT DG +L+ +G +G LG
Sbjct: 204 FVTTDG-ELYIFGESENGKLG 223
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 101/224 (45%), Gaps = 46/224 (20%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL---VSSFTPSPVWDFHGHTV 59
+I + AG S A+ G L+MWG+ ++EG L +++ P V G V
Sbjct: 141 KIKQLSAGSNTSAALTEDGRLFMWGD------NSEGQIGLPNILNACVPHQVT--IGKPV 192
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD------RESRLRPKIIET 113
++CG H + + GE Y +G + NG+LGL + R +L P+I
Sbjct: 193 SWISCGYYHSAFVTTDGE--------LYIFGESENGKLGLPNELLSNHRIPQLVPEI--- 241
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
P V +V CG H+ +LT E +TFGLG+ GQLG GT +
Sbjct: 242 -----PEKVIQVACGGEHSVVLT---------EDAVYTFGLGQFGQLGLGTLLFETSEPK 287
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGL 213
V E + + CG H ++++ G ++++G + GLGL
Sbjct: 288 VVENIGNKTISYISCGENHAALLTDNGLMYTFGDGRHGKLGLGL 331
>gi|58533115|gb|AAW78912.1| putative chromosome condensation factor [Triticum turgidum]
Length = 882
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 121/290 (41%), Gaps = 44/290 (15%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSS------FTPSPVWDFHGHTVVKVACGSEHVVA 71
D+ G +++WG +S+ +++ S P P+ V V CG H
Sbjct: 32 DSLGDVYVWGEVVCDNSARTSSDTVIRSTGKTDFLLPKPLESNLVLDVYHVDCGVRHASL 91
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
+ GE + +WG ++ G+LG G RE + P+++E+ + + V CG FH
Sbjct: 92 VTRNGEVF--------TWGEDSGGRLGHGTREDSVHPRLVESL---AACNIDFVACGEFH 140
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF 191
T +T E W G G LGHGT +P ++ + + + V CG +
Sbjct: 141 TCAVT------TTGELYTWGDGTHNVGLLGHGTDVGHWIPRRISGPLEGLQIAYVSCGTW 194
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
HT++++S G ++++G + G+ + L + +SG + VAC
Sbjct: 195 HTALITSMGQLFTFG-DGSFGVLGHGDLKSISCPREVES--LSG--------LKTIAVAC 243
Query: 252 GAAHT-----VLVTDDGY-----KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G HT V+VT KL++WG G LG G P V
Sbjct: 244 GVWHTAAIVEVIVTQSSATVSAGKLFTWGDGDKHRLGHGDKEARLKPTCV 293
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 125/289 (43%), Gaps = 30/289 (10%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ G L+ WG+ + G + V + P + G + V+CG
Sbjct: 134 VACGEFHTCAVTTTGELYTWGD-GTHNVGLLGHGTDVGHWIPRRISGPLEGLQIAYVSCG 192
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
+ H + S G+ + ++G + G LG GD +S P+ +E+ S V
Sbjct: 193 TWHTALITSMGQLF--------TFGDGSFGVLGHGDLKSISCPREVESL---SGLKTIAV 241
Query: 126 TCGSFHTALLTH---RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
CG +HTA + + + +T+G G+ +LGHG ++ L P V L Y +
Sbjct: 242 ACGVWHTAAIVEVIVTQSSATVSAGKLFTWGDGDKHRLGHGDKEARLKPTCVASLIDYDF 301
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
V CG T ++++G VW+ G G N N G P L+
Sbjct: 302 Y-RVACGHSLTVGLTTSGKVWTMG-NSVYGQLGNL----NSDG---RPCLVEDK----IA 348
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +Q+ACG+ H ++T ++++WG+G +G LG G D P V
Sbjct: 349 SEHVLQIACGSYHVAVLTSRS-EVFTWGKGANGRLGHGDIEDRKVPTTV 396
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 105/260 (40%), Gaps = 30/260 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G + I + G L+ +G+ G L S P V G + V
Sbjct: 185 QIAYVSCGTWHTALITSMGQLFTFGDGSF---GVLGHGDLKSISCPREVESLSGLKTIAV 241
Query: 63 ACGSEHVVALVSAGETYKGEDLVC---YSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
ACG H A+V T + ++WG + +LG GD+E+RL+P + +
Sbjct: 242 ACGVWHTAAIVEVIVTQSSATVSAGKLFTWGDGDKHRLGHGDKEARLKPTCVASLID--- 298
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ Y V CG T LT WT G GQLG+ S P V++
Sbjct: 299 YDFYRVACGHSLTVGLT--------TSGKVWTMGNSVYGQLGN--LNSDGRPCLVEDKIA 348
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ + CG +H +V++S +V++WG KG N L + D P +
Sbjct: 349 SEHVLQIACGSYHVAVLTSRSEVFTWG--KG----ANGRLGHGDIEDRKVPTTVEALRDR 402
Query: 240 GPKFQDPVQVACGAAHTVLV 259
+ +ACGA T +
Sbjct: 403 AVR-----HIACGANFTAAI 417
>gi|357135039|ref|XP_003569119.1| PREDICTED: uncharacterized protein LOC100832036 [Brachypodium
distachyon]
Length = 913
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 123/290 (42%), Gaps = 44/290 (15%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSS------FTPSPVWDFHGHTVVKVACGSEHVVA 71
D+ G +++WG +S+ +++ S P P+ V V CG H
Sbjct: 32 DSLGDVYVWGEVVCDNSARTSSDTVIRSTGKTDFLLPKPLESNLVLDVYHVDCGVRHASL 91
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
+ +GE + +WG ++ G+LG G RE + P+++E+ + + V CG FH
Sbjct: 92 VTRSGEVF--------TWGEDSGGRLGHGTREDSVHPRLVESL---AACNIDFVACGEFH 140
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF 191
T +T E W G G LGHGT +P ++ + + + V CG +
Sbjct: 141 TCAVT------TTGELYTWGDGTHNVGLLGHGTDVGHWIPRRISGALEGLQVAYVSCGTW 194
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
HT++++S G ++++G + G+ + ++ + +SG + VAC
Sbjct: 195 HTALITSMGQLFTFG-DGSFGVLGHGNVKSISCPREVES--LSG--------LKTIAVAC 243
Query: 252 GAAHT-----VLVTDDGY-----KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G HT V+VT KL++WG G LG G P V
Sbjct: 244 GVWHTAAIVEVIVTQSSATVSAGKLFTWGDGDKHRLGHGDKEARLNPTCV 293
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 127/293 (43%), Gaps = 38/293 (12%)
Query: 7 VKAGGMMSLAIDNAGALWMWG----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
V G + A+ G L+ WG N L T+ G + + + G V V
Sbjct: 134 VACGEFHTCAVTTTGELYTWGDGTHNVGLLGHGTDVGHWIPRRISGA----LEGLQVAYV 189
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+CG+ H + S G+ + ++G + G LG G+ +S P+ +E+ S
Sbjct: 190 SCGTWHTALITSMGQLF--------TFGDGSFGVLGHGNVKSISCPREVESL---SGLKT 238
Query: 123 YEVTCGSFHTALLTH---RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V CG +HTA + + + +T+G G+ +LGHG ++ L P V L
Sbjct: 239 IAVACGVWHTAAIVEVIVTQSSATVSAGKLFTWGDGDKHRLGHGDKEARLNPTCVASLID 298
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGME-KGLGLCPNASLTRNEAGDAISPILISGNGP 238
Y + V CG T ++++G VW+ G G PN+ GD I+
Sbjct: 299 YDFY-RVACGHSLTVGLTTSGKVWTMGNSVYGQLGNPNSDGRPCLVGDKITN-------- 349
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +QVACG+ H ++T ++++WG+G +G LG G D P +V
Sbjct: 350 -----EHVLQVACGSYHVSVLTSRS-EVFTWGKGANGRLGHGDIEDQKVPTLV 396
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 109/262 (41%), Gaps = 34/262 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
Q+ V G + I + G L+ +G+ G ++ S P V G + V
Sbjct: 185 QVAYVSCGTWHTALITSMGQLFTFGDGSF---GVLGHGNVKSISCPREVESLSGLKTIAV 241
Query: 63 ACGSEHVVALVSAGETYKGEDLVC---YSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
ACG H A+V T + ++WG + +LG GD+E+RL P + +
Sbjct: 242 ACGVWHTAAIVEVIVTQSSATVSAGKLFTWGDGDKHRLGHGDKEARLNPTCVASLID--- 298
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT--QSALVPEQVKEL 177
+ Y V CG T LT WT G GQLG+ + + LV +++
Sbjct: 299 YDFYRVACGHSLTVGLT--------TSGKVWTMGNSVYGQLGNPNSDGRPCLVGDKITN- 349
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+++ V CG +H SV++S +V++WG KG N L + D P L+
Sbjct: 350 ---EHVLQVACGSYHVSVLTSRSEVFTWG--KG----ANGRLGHGDIEDQKVPTLVE--- 397
Query: 238 PHGPKFQDPVQVACGAAHTVLV 259
K + +ACGA T +
Sbjct: 398 --ALKDRSVRHIACGANFTAAI 417
>gi|431898775|gb|ELK07147.1| X-linked retinitis pigmentosa GTPase regulator [Pteropus alecto]
Length = 1019
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 123/288 (42%), Gaps = 42/288 (14%)
Query: 10 GGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHTVVKVACGS 66
G + I L+M+G S+ G L S T P+ V V ACG
Sbjct: 88 GDEHTAIITGNNKLYMFG------SNNWGQLGLGSRSTVSKPTCVKALKPEKVKFAACGR 141
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
H + L G+ Y + G NN GQLGLGD E R I F S + +++
Sbjct: 142 NHTLVLTEEGKVY--------AAGGNNEGQLGLGDTEDRNTFHPICFFT--SQHQLKQLS 191
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSV 186
GS +A LT ++ + +G GQ+G + VP QV + +
Sbjct: 192 AGSNTSAALT--------VDGNLFMWGDNSEGQIGLKNVPNVCVPHQVTVGKPIAW---I 240
Query: 187 DCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 246
CG +H++ V+ G+++++G + C L R + P L+ G +
Sbjct: 241 SCGYYHSAFVTMEGELYTFGETE----CGKLGLPRQLLMNHKVPQLVPGIP------EKV 290
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
+QVACG HTV++T+ ++++G G+ G LG G I A +L P
Sbjct: 291 IQVACGGGHTVVLTEKA--VYTFGLGQFGQLGLGTFIFETAEPKILEP 336
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 37/226 (16%)
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
H + +++ GS AL G + WG N+ GQ+GL + + P + T +
Sbjct: 185 HQLKQLSAGSNTSAALTVDGN--------LFMWGDNSEGQIGLKNVPNVCVPHQV-TVGK 235
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG--HGTTQSALVPEQV 174
W ++CG +H+A +T +E +TFG E G+LG + VP+ V
Sbjct: 236 PIAW----ISCGYYHSAFVT--------MEGELYTFGETECGKLGLPRQLLMNHKVPQLV 283
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS 234
+P+ V + V CG HT V++ V+++G+ + L + + PI
Sbjct: 284 PGIPEKV--IQVACGGGHTVVLTEKA-VYTFGLGQFGQLGLGTFIFETAEPKILEPI--- 337
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
K Q + ++CG HT L+TD G ++++G GR G LG G
Sbjct: 338 -------KDQKIIYISCGENHTALITDVGL-MYTFGDGRHGKLGLG 375
>gi|351710402|gb|EHB13321.1| Serine/threonine-protein kinase Nek8 [Heterocephalus glaber]
Length = 709
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 129/282 (45%), Gaps = 35/282 (12%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I V G + + + + G + +G+ + G SL P+ V G+ +V+VA
Sbjct: 405 IKHVACGDLFTACLTDRGIIMTFGSG---SNGCLGHGSLTDISQPTIVEALLGYEMVQVA 461
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET-FNQDSPWAV 122
CG+ HV+AL + E ++WG + G+LGLG RES P+ + Q++ W
Sbjct: 462 CGASHVLALSTEREL--------FAWGRGDRGRLGLGTRESHSCPQQVPMPPGQEAQW-- 511
Query: 123 YEVTCGSFHTALLTHRKRP-----NDMLESMCWTFGLGENGQLGHGTTQS-ALVPEQVKE 176
V CG + +LT R R N + F LGE ++ + P +
Sbjct: 512 --VVCGIDSSMILTVRGRALACGSNRFNKLGLDHFSLGEEADPQQQVEEALSFTPLRSAP 569
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
L Q L+ VD G H++ V+++GD +++G + + L N + +P + G
Sbjct: 570 LDQEPLLI-VDLGTAHSAAVTASGDCYTFGSNQ------HGQLGTNARRGSRAPCQVQGL 622
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
G K VACG A TV + +G +++SWG+G G LG
Sbjct: 623 --EGIKM---AMVACGDAFTVAIGAEG-EVYSWGKGARGRLG 658
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 23/144 (15%)
Query: 163 GTTQSALVPEQVKE-LPQY----------VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 211
G++ AL+P V++ PQ+ V + V CG T+ ++ G + ++G
Sbjct: 374 GSSGGALLPGAVEQPQPQFFSRFLEGQSGVTIKHVACGDLFTACLTDRGIIMTFGSGS-- 431
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
N L D P ++ + + VQVACGA+H VL +L++WGR
Sbjct: 432 ----NGCLGHGSLTDISQPTIVEALLGY-----EMVQVACGASH-VLALSTERELFAWGR 481
Query: 272 GRSGVLGTGKTIDFFAPAIVLWPP 295
G G LG G P V PP
Sbjct: 482 GDRGRLGLGTRESHSCPQQVPMPP 505
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 14/134 (10%)
Query: 12 MMSLAIDNAGALWMWGNCPLPDSSTEGGF---SLVSSFTPSPVWDFHGHTVVKVACGSEH 68
++ L ++ A+ G+C S+ G + S P V G + VACG
Sbjct: 577 IVDLGTAHSAAVTASGDCYTFGSNQHGQLGTNARRGSRAPCQVQGLEGIKMAMVACGDAF 636
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCG 128
VA+ + GE Y SWG G+LG D ++ L P+ ++ ++ P+ V V+C
Sbjct: 637 TVAIGAEGEVY--------SWGKGARGRLGRRDEDAGL-PRPVQ-LDEMHPYTVTSVSCC 686
Query: 129 SFHTALLTHRKRPN 142
+T LL R P+
Sbjct: 687 HGNT-LLAVRLSPS 699
>gi|242016591|ref|XP_002428862.1| X-linked retinitis pigmentosa GTPase regulator, putative [Pediculus
humanus corporis]
gi|212513605|gb|EEB16124.1| X-linked retinitis pigmentosa GTPase regulator, putative [Pediculus
humanus corporis]
Length = 516
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 47/227 (20%)
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+ ++ ++ G H L G Y WG N++GQ G+ + L P+ IE N
Sbjct: 142 NNIIALSAGCHHSAFLTEEGSVY--------IWGDNSDGQCGIKNENYLLNPRKIEFQN- 192
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ ++CG +HTA ++ K +TFG +NG+LG VPE V E
Sbjct: 193 ----PINSISCGYYHTAFISLGK---------VYTFGEDDNGKLGRSDKLPNDVPEGV-E 238
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILIS 234
L + +SV CG HT +++ +G +++G LGL G+ + I
Sbjct: 239 LDENC--ISVKCGGSHTIILTESGKAYAFGSNFSGQLGL-----------GNFETEFSI- 284
Query: 235 GNGPHGPKFQDP----VQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
P F D + V CG +H+ +TD+G KL++ G GR+G L
Sbjct: 285 ---PQRVNFTDENVNLIYVTCGESHSAFLTDEG-KLYTCGDGRNGKL 327
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 111/235 (47%), Gaps = 39/235 (16%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
PS + + VACG H + + + ++G N++GQLG+GD + R
Sbjct: 79 PSCLKSLKPFQSIHVACGKSHTLISTECNKIF--------AFGCNSDGQLGVGDLDDRWV 130
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
P++I T + + + ++ G H+A LT E + +G +GQ G
Sbjct: 131 PQMIST-DLEKTNNIIALSAGCHHSAFLTE--------EGSVYIWGDNSDGQCGIKNENY 181
Query: 168 ALVPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGD 226
L P +++ + P + S+ CG +HT+ + S G V+++G + N L R++
Sbjct: 182 LLNPRKIEFQNP----INSISCGYYHTAFI-SLGKVYTFGED------DNGKLGRSDK-- 228
Query: 227 AISPILISGNGPHGPKF-QDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ + P G + ++ + V CG +HT+++T+ G K +++G SG LG G
Sbjct: 229 ------LPNDVPEGVELDENCISVKCGGSHTIILTESG-KAYAFGSNFSGQLGLG 276
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 37/222 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +++CG EH + +G + +G N+ GQLG G + +P +++
Sbjct: 38 VKEISCGDEHTALVCKSGRV--------FLFGKNDFGQLGFGHTKIVNKPSCLKSL---K 86
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK-EL 177
P+ V CG HT + T + + FG +GQLG G VP+ + +L
Sbjct: 87 PFQSIHVACGKSHTLISTECNKI--------FAFGCNSDGQLGVGDLDDRWVPQMISTDL 138
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+ ++++ G H++ ++ G V+ WG + G C +NE L++
Sbjct: 139 EKTNNIIALSAGCHHSAFLTEEGSVYIWG-DNSDGQCG----IKNE------NYLLN--- 184
Query: 238 PHGPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
P +FQ+P+ ++CG HT ++ K++++G +G LG
Sbjct: 185 PRKIEFQNPINSISCGYYHTAFISLG--KVYTFGEDDNGKLG 224
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 114/259 (44%), Gaps = 38/259 (14%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+ I ++ AG S + G++++WG+ +S + G + +F + +
Sbjct: 142 NNIIALSAGCHHSAFLTEEGSVYIWGD----NSDGQCGIKNENYLLNPRKIEFQ-NPINS 196
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
++CG H A +S G+ Y ++G ++NG+LG D+ P+ +E
Sbjct: 197 ISCGYYHT-AFISLGKVY--------TFGEDDNGKLGRSDKLPNDVPEGVEL-----DEN 242
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL-VPEQVKELPQY 180
V CG HT +LT + + FG +GQLG G ++ +P++V +
Sbjct: 243 CISVKCGGSHTIILTESGKA--------YAFGSNFSGQLGLGNFETEFSIPQRVNFTDEN 294
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
V L+ V CG H++ ++ G +++ G + LC +E+ + +P I
Sbjct: 295 VNLIYVTCGESHSAFLTDEGKLYTCGDGRNGKLC-----NEDESTNICTPTTIEMFKSFF 349
Query: 241 PKFQDPVQVACGAAHTVLV 259
+ V+CG HT+++
Sbjct: 350 CTY-----VSCGGCHTMVL 363
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+ V CG H + L +G+ Y ++G+N +GQLGLG+ E+ F +
Sbjct: 242 NCISVKCGGSHTIILTESGKAY--------AFGSNFSGQLGLGNFETEFSIPQRVNFTDE 293
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ +Y VTCG H+A LT E +T G G NG+L + + + E+
Sbjct: 294 NVNLIY-VTCGESHSAFLTD--------EGKLYTCGDGRNGKLCNEDESTNICTPTTIEM 344
Query: 178 PQYVYLVSVDCGLFHTSVVSSA 199
+ + V CG HT V++ A
Sbjct: 345 FKSFFCTYVSCGGCHTMVLAKA 366
>gi|386720863|ref|YP_006187188.1| hypothetical protein B2K_01550 [Paenibacillus mucilaginosus K02]
gi|384087987|gb|AFH59423.1| hypothetical protein B2K_01550 [Paenibacillus mucilaginosus K02]
Length = 1164
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 117/295 (39%), Gaps = 50/295 (16%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNC---PLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
+V AG SLA+ + G +W +G L D +T S TP V D G VV
Sbjct: 732 TAVSAGENHSLALKSDGTVWAFGYNGYGQLGDGTTS------SQRTPVQVKDLTG--VVA 783
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+A G + +AL S D +SWG N G+LG G P +
Sbjct: 784 IAAGKDFSLALKS--------DGTVWSWGQNTYGELGNGTTTRSSVPVQVALLTD----- 830
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V + G +H L + + +G NG+LG+ +T S P Q
Sbjct: 831 VKAIAAGDYHGVALKK--------DGSVFAWGYNGNGELGNSSTISQSTPVQ----SGVT 878
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ + G +HT + S G VWSWG G G N + T AI P
Sbjct: 879 GIKGIAAGPYHTLALKSDGTVWSWGYN-GYGQLGNGNNTSRSVPAAI------------P 925
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPL 296
+A G ++ +DG L+SWGR +G LG G T+D P V+ P +
Sbjct: 926 GLASIASIAAGENQSIAYGNDGI-LYSWGRNANGQLGNGTTVDTNVPHKVIGPNI 979
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 113/278 (40%), Gaps = 43/278 (15%)
Query: 11 GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVV 70
G ++ I + G +W WG G + S+ P V + G ++ A G H V
Sbjct: 638 GNHTMFIKSDGTVWGWG---YNGHGQLGTGTSNSTSVPGKVINLTGMKMI--AGGENHTV 692
Query: 71 ALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF 130
AL S D ++WG N GQLG +R P + T W V+ G
Sbjct: 693 ALRS--------DGTLHTWGYNGYGQLGDDSTTTRYSPVQVSTLTN---WTA--VSAGEN 739
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
H+ L + W FG GQLG GTT S P QVK+L +V++ G
Sbjct: 740 HSLALKS--------DGTVWAFGYNGYGQLGDGTTSSQRTPVQVKDLTG---VVAIAAGK 788
Query: 191 FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
+ + S G VWSWG + G N + TR+ P+ ++ D +A
Sbjct: 789 DFSLALKSDGTVWSWG-QNTYGELGNGTTTRSSV-----PVQVA-------LLTDVKAIA 835
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
G H V + DG +++WG +G LG TI P
Sbjct: 836 AGDYHGVALKKDG-SVFAWGYNGNGELGNSSTISQSTP 872
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 97/257 (37%), Gaps = 48/257 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + ++ AG SLA+ + G +W WG + G + SS PV V
Sbjct: 778 LTGVVAIAAGKDFSLALKSDGTVWSWGQNTYGE--LGNGTTTRSSV---PVQVALLTDVK 832
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A G H VAL +D ++WG N NG+LG S+ P Q
Sbjct: 833 AIAAGDYHGVALK--------KDGSVFAWGYNGNGELGNSSTISQSTPV------QSGVT 878
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ + G +HT L + W++G GQLG+G S VP + P
Sbjct: 879 GIKGIAAGPYHTLALKS--------DGTVWSWGYNGYGQLGNGNNTSRSVPAAI---PGL 927
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH- 239
+ S+ G + + G ++SWG RN G + + N PH
Sbjct: 928 ASIASIAAGENQSIAYGNDGILYSWG--------------RNANGQLGNGTTVDTNVPHK 973
Query: 240 --GPKFQDPVQVACGAA 254
GP +P AA
Sbjct: 974 VIGPNI-NPADTTAPAA 989
>gi|344251059|gb|EGW07163.1| putative E3 ubiquitin-protein ligase HERC1 [Cricetulus griseus]
Length = 1016
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 249 SMALTESGEVFSWGDG---DYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 305
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 306 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 354
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 355 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 406
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 407 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 455
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P +V
Sbjct: 456 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 492
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 396 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 449
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 450 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 499
Query: 121 AVYEVTCGSFHTALLTHRKRP 141
+ +++ G H+A T P
Sbjct: 500 -IRQISAGRCHSAAWTAPPVP 519
>gi|326506178|dbj|BAJ86407.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 389
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 134/308 (43%), Gaps = 55/308 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG-----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+I GG LA+D+ G + WG C E G + P P
Sbjct: 95 KIVQAAIGGWHCLAVDDKGRAYAWGGNEYGQCGEEPERKEDGTRALRRDIPIPQRCALKL 154
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V +VA G H V L G + +WG GD ++ P ++ Q
Sbjct: 155 KVRQVAAGGTHSVVLTQEGHVW--------TWGQ----PWPPGDIKNISTPVRVQGLEQ- 201
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + G+FH L+ ++ + W +G E GQLG G TQ P +V+ L
Sbjct: 202 ----VSMIAVGAFHNLALS--------VDRILWAWGNNEYGQLGIGDTQPRSQPIRVEGL 249
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPI---L 232
+ LV + G +H++ ++ G+V++WG E G LG + S + P+ L
Sbjct: 250 SN-LSLVDIAAGGWHSAALTKEGEVYAWGRGEHGRLGFGDDKS-------SHMVPLQVQL 301
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP---A 289
++G +D VQV+CG H+V++T DG +++S+GRG G LG G+ + P
Sbjct: 302 LAG--------EDIVQVSCGGTHSVVLTSDG-RIFSYGRGDHGRLGDGRKVTTGHPMEVP 352
Query: 290 IVLWPPLT 297
I L PP T
Sbjct: 353 INLPPPKT 360
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 25/202 (12%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ Q+ + G +LA+ LW WGN + G P V ++V
Sbjct: 199 LEQVSMIAVGAFHNLALSVDRILWAWGN---NEYGQLGIGDTQPRSQPIRVEGLSNLSLV 255
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSP 119
+A G H AL GE Y+WG +G+LG G D+ S + P ++ +
Sbjct: 256 DIAAGGWHSAALTKEGEV--------YAWGRGEHGRLGFGDDKSSHMVPLQVQLLAGED- 306
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK-ELP 178
+ +V+CG H+ +LT R +++G G++G+LG G + P +V LP
Sbjct: 307 --IVQVSCGGTHSVVLTSDGR--------IFSYGRGDHGRLGDGRKVTTGHPMEVPINLP 356
Query: 179 QYVYLVSVDCGLFHTSVVSSAG 200
S + GL+ + V+ G
Sbjct: 357 PPKTSTSSE-GLWQANYVACGG 377
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 25/193 (12%)
Query: 84 LVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPND 143
+ +WG+ +GQLG+G + + R + I + +AV V GS ++ +
Sbjct: 8 VAVLAWGSGEDGQLGMGGCDEKDRARCICALDA---YAVSAVVAGSRNSLAICD------ 58
Query: 144 MLESMCWTFGLGENGQLGHGT-TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV 202
+ +T+G + G LGH T++ P V L V +V G +H V G
Sbjct: 59 --DGSLFTWGWNQRGTLGHPPETKTESSPAHVDALVG-VKIVQAAIGGWHCLAVDDKGRA 115
Query: 203 WSWGMEKGLGLCPNASLTRNEAGDAIS---PILISGNGPHGPKFQDPV-QVACGAAHTVL 258
++WG + G C + + A+ PI P + V QVA G H+V+
Sbjct: 116 YAWGGNE-YGQCGEEPERKEDGTRALRRDIPI------PQRCALKLKVRQVAAGGTHSVV 168
Query: 259 VTDDGYKLWSWGR 271
+T +G+ +W+WG+
Sbjct: 169 LTQEGH-VWTWGQ 180
>gi|326533000|dbj|BAJ89345.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 500
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 124/285 (43%), Gaps = 57/285 (20%)
Query: 33 DSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGAN 92
DSST G +L S P V G + VA G H +AL G+ + WG
Sbjct: 222 DSSTSGDENL--SAPPCVVTFNTGVKITAVAAGGRHTLALSDFGQVW--------GWGYG 271
Query: 93 NNGQLGLGDR-ESRLRPKII-----ETFNQDSPWA------------------VYEVTCG 128
GQLGLG R + P I ++++D P A V + CG
Sbjct: 272 GEGQLGLGSRIRTVSSPHTIPCIESASYSKDRPSAMKGNKNAEGQINKVMGSRVTAIACG 331
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
H+ ++T FG G GQ G G T L P V + V + V
Sbjct: 332 GRHSVVVTD--------SGALLAFGWGLYGQCGQGNTDDVLSPTCVSAI-LGVKMQDVAA 382
Query: 189 GLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 246
GL+HT +S+ GDV+S+G + LG+ + + T + DA P L + ++
Sbjct: 383 GLWHTVSISADGDVYSFGGNQFGQLGIGSDQAETIPKLVDA--PSL---------ENKNA 431
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V+CGA H+ ++TD+G +++ WG + G LG G ++D P IV
Sbjct: 432 RSVSCGARHSAIITDEG-EVFCWGWNKYGQLGLGDSMDRNVPCIV 475
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 117/285 (41%), Gaps = 58/285 (20%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSP------------ 50
+I +V AGG +LA+ + G +W WG VSS P
Sbjct: 245 KITAVAAGGRHTLALSDFGQVWGWGYGGEGQLGLGSRIRTVSSPHTIPCIESASYSKDRP 304
Query: 51 ------------VWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG 98
+ G V +ACG H V + +G L+ + WG GQ G
Sbjct: 305 SAMKGNKNAEGQINKVMGSRVTAIACGGRHSVVVTDSGA------LLAFGWGLY--GQCG 356
Query: 99 LGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENG 158
G+ + L P + + +V G +HT ++ + ++FG + G
Sbjct: 357 QGNTDDVLSPTCVSAILGVK---MQDVAAGLWHTVSIS--------ADGDVYSFGGNQFG 405
Query: 159 QLGHGTTQSALVPEQVKELP--QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPN 216
QLG G+ Q+ +P+ V + P + SV CG H+++++ G+V+ WG K L
Sbjct: 406 QLGIGSDQAETIPKLV-DAPSLENKNARSVSCGARHSAIITDEGEVFCWGWNKYGQLGLG 464
Query: 217 ASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
S+ RN P ++ +G H P+ V+CG HT+++ +
Sbjct: 465 DSMDRN------VPCIVPVDGYH------PLNVSCGWWHTLVLAE 497
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 32/201 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGAL----W-MWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHG 56
S++ ++ GG S+ + ++GAL W ++G C G + +P+ V G
Sbjct: 323 SRVTAIACGGRHSVVVTDSGALLAFGWGLYGQC--------GQGNTDDVLSPTCVSAILG 374
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+ VA G H V++ + G+ YS+G N GQLG+G ++ PK+++ +
Sbjct: 375 VKMQDVAAGLWHTVSISADGDV--------YSFGGNQFGQLGIGSDQAETIPKLVDAPSL 426
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
++ A V+CG+ H+A++T D E CW G + GQLG G + VP V
Sbjct: 427 ENKNA-RSVSCGARHSAIIT------DEGEVFCW--GWNKYGQLGLGDSMDRNVPCIVP- 476
Query: 177 LPQYVYLVSVDCGLFHTSVVS 197
+ Y + ++V CG +HT V++
Sbjct: 477 VDGY-HPLNVSCGWWHTLVLA 496
>gi|297791865|ref|XP_002863817.1| hypothetical protein ARALYDRAFT_917597 [Arabidopsis lyrata subsp.
lyrata]
gi|297309652|gb|EFH40076.1| hypothetical protein ARALYDRAFT_917597 [Arabidopsis lyrata subsp.
lyrata]
Length = 1083
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 133/292 (45%), Gaps = 35/292 (11%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ G ++ WG+ ++ G + VS + P + G + V+CG
Sbjct: 334 VACGEFHTCAVTMTGEIYTWGD-GTHNAGLLGHGTDVSHWIPKRISGPLEGLQIASVSCG 392
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + S G+ +++G G LG GD+E+ P+ +E+ S V
Sbjct: 393 PWHTALITSTGQ--------LFTFGDGTFGVLGHGDKETVFYPREVESL---SGLRTIAV 441
Query: 126 TCGSFHTALLTH---RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
CG +H A + + + + +T+G G+ +LGHG +S L P V L + +
Sbjct: 442 ACGVWHAAAIVEVIVTQSTSSISSGKLFTWGDGDKSRLGHGDKESRLKPTCVSALIDHTF 501
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
V CG T ++++G V++ G + LG PNA D P L+
Sbjct: 502 H-RVACGHSLTVGLTTSGKVYTMGSTVYGQLG-NPNA--------DGKLPCLVEDK---- 547
Query: 241 PKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+D V+ +ACGA H ++T ++++WG+G +G LG G D AP++V
Sbjct: 548 -LIKDCVEEIACGAYHVAVLTSRN-EVFTWGKGANGRLGHGDIEDRKAPSLV 597
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 119/293 (40%), Gaps = 49/293 (16%)
Query: 18 DNAGALWMWGNCPLPDSS---TEGGFSLVSS----FTPSPVWDFHGHTVVKVACGSEHVV 70
D G +++WG + + E + V S P P+ V +ACG H
Sbjct: 231 DALGDVYIWGEVLCDNVAKFGAEKNATCVGSRSDVLIPKPLESNVVLDVHHIACGVRHAA 290
Query: 71 ALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF 130
+ GE + +WG + G+LG G + P++IE+ S V V CG F
Sbjct: 291 LVSRQGEVF--------TWGEASGGRLGHGMGKDVTGPQLIESLAATS---VDFVACGEF 339
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
HT +T E W G G LGHGT S +P+++ + + + SV CG
Sbjct: 340 HTCAVTMTG------EIYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQIASVSCGP 393
Query: 191 FHTSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ 248
+HT++++S G ++++ G LG ++ +++S + +
Sbjct: 394 WHTALITSTGQLFTFGDGTFGVLGHGDKETVFYPREVESLSGLRT-------------IA 440
Query: 249 VACGAAHT-----VLVTDDGY-----KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
VACG H V+VT KL++WG G LG G P V
Sbjct: 441 VACGVWHAAAIVEVIVTQSTSSISSGKLFTWGDGDKSRLGHGDKESRLKPTCV 493
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 110/266 (41%), Gaps = 41/266 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
QI SV G + I + G L+ +G +G F ++ + F P V G
Sbjct: 385 QIASVSCGPWHTALITSTGQLFTFG---------DGTFGVLGHGDKETVFYPREVESLSG 435
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVC---YSWGANNNGQLGLGDRESRLRPKIIET 113
+ VACG H A+V T + ++WG + +LG GD+ESRL+P +
Sbjct: 436 LRTIAVACGVWHAAAIVEVIVTQSTSSISSGKLFTWGDGDKSRLGHGDKESRLKPTCVSA 495
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
+ + V CG T LT + +T G GQLG+ L P
Sbjct: 496 LIDHT---FHRVACGHSLTVGLTTSGK--------VYTMGSTVYGQLGNPNADGKL-PCL 543
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
V++ + + CG +H +V++S +V++WG KG N L + D +P L+
Sbjct: 544 VEDKLIKDCVEEIACGAYHVAVLTSRNEVFTWG--KG----ANGRLGHGDIEDRKAPSLV 597
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLV 259
K + +ACG+ T +
Sbjct: 598 D-----TLKERHVKNIACGSNFTAAI 618
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V ++ACG+ HV L S E + +WG NG+LG GD E R P +++T +
Sbjct: 553 VEEIACGAYHVAVLTSRNEVF--------TWGKGANGRLGHGDIEDRKAPSLVDTLKERH 604
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
V + CGS TA + K + +S C
Sbjct: 605 ---VKNIACGSNFTAAICLHKWVSGTEQSQC 632
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 163 GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
G+ L+P+ + E + + + CG+ H ++VS G+V++WG G L
Sbjct: 260 GSRSDVLIPKPL-ESNVVLDVHHIACGVRHAALVSRQGEVFTWGEASG------GRLGHG 312
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTG 280
D P LI F VACG HT VT G ++++WG G +G+LG G
Sbjct: 313 MGKDVTGPQLIESLAATSVDF-----VACGEFHTCAVTMTG-EIYTWGDGTHNAGLLGHG 366
Query: 281 KTIDFFAPAIVLWP 294
+ + P + P
Sbjct: 367 TDVSHWIPKRISGP 380
>gi|58533120|gb|AAW78916.1| putative chromosome condensation factor [Triticum aestivum]
Length = 907
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 121/290 (41%), Gaps = 44/290 (15%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSS------FTPSPVWDFHGHTVVKVACGSEHVVA 71
D+ G +++WG +S+ +++ S P P+ V V CG H
Sbjct: 32 DSLGDVYVWGEVVCDNSARTSSDTVIRSTGKTDFLLPKPLESNLVLDVYHVDCGVRHASL 91
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
+ GE + +WG ++ G+LG G RE + P+++E+ + + V CG FH
Sbjct: 92 VTRNGEVF--------TWGEDSGGRLGHGTREDSVHPRLVESL---AACNIDFVACGEFH 140
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF 191
T +T E W G G LGHGT +P ++ + + + V CG +
Sbjct: 141 TCAVT------TTGELYTWGDGTHNVGLLGHGTDVGHWIPRRISGPLEGLQIAYVSCGTW 194
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
HT++++S G ++++G + G+ + L + +SG + VAC
Sbjct: 195 HTALITSMGQLFTFG-DGSFGVLGHGDLKSISCPREVES--LSG--------LKTIAVAC 243
Query: 252 GAAHT-----VLVTDDGY-----KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G HT V+VT KL++WG G LG G P V
Sbjct: 244 GVWHTAAIVEVIVTQSSATVSAGKLFTWGDGDKHRLGHGDKEARLKPTCV 293
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 125/289 (43%), Gaps = 30/289 (10%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ G L+ WG+ + G + V + P + G + V+CG
Sbjct: 134 VACGEFHTCAVTTTGELYTWGD-GTHNVGLLGHGTDVGHWIPRRISGPLEGLQIAYVSCG 192
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
+ H + S G+ +++G + G LG GD +S P+ +E+ S V
Sbjct: 193 TWHTALITSMGQ--------LFTFGDGSFGVLGHGDLKSISCPREVESL---SGLKTIAV 241
Query: 126 TCGSFHTALLTH---RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
CG +HTA + + + +T+G G+ +LGHG ++ L P V L Y +
Sbjct: 242 ACGVWHTAAIVEVIVTQSSATVSAGKLFTWGDGDKHRLGHGDKEARLKPTCVASLIDYDF 301
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
V CG T ++++G VW+ G G N N G P L+
Sbjct: 302 Y-RVACGHSLTVGLTTSGKVWTMG-NSVYGQLGNL----NSDG---RPCLVEDK----IA 348
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +Q+ACG+ H ++T ++++WG+G +G LG G D P V
Sbjct: 349 SEHVLQIACGSYHVAVLTSRS-EVFTWGKGANGRLGHGDIEDRKVPTTV 396
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 106/262 (40%), Gaps = 34/262 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G + I + G L+ +G+ G L S P V G + V
Sbjct: 185 QIAYVSCGTWHTALITSMGQLFTFGDGSF---GVLGHGDLKSISCPREVESLSGLKTIAV 241
Query: 63 ACGSEHVVALVSAGETYKGEDLVC---YSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
ACG H A+V T + ++WG + +LG GD+E+RL+P + +
Sbjct: 242 ACGVWHTAAIVEVIVTQSSATVSAGKLFTWGDGDKHRLGHGDKEARLKPTCVASLID--- 298
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ Y V CG T LT WT G GQLG+ S P V++
Sbjct: 299 YDFYRVACGHSLTVGLT--------TSGKVWTMGNSVYGQLGN--LNSDGRPCLVEDKIA 348
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ + CG +H +V++S +V++WG KG N L + D P +
Sbjct: 349 SEHVLQIACGSYHVAVLTSRSEVFTWG--KG----ANGRLGHGDIEDRKVPTTVEA---- 398
Query: 240 GPKFQDPV--QVACGAAHTVLV 259
+D +ACGA T +
Sbjct: 399 ---LRDRAVRHIACGANFTAAI 417
>gi|168046566|ref|XP_001775744.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672896|gb|EDQ59427.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 441
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 122/268 (45%), Gaps = 50/268 (18%)
Query: 32 PDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGA 91
P++S E F+ P G + VA G H +AL + + + WG
Sbjct: 169 PEASEENAFAPPCLVKLDP-----GIRISSVAAGGRHTLALSDNTNHMETDVGQVWGWGY 223
Query: 92 NNNGQLGLGDRESRLR----PKIIETFNQ-DSPWA----------VYEVTCGSFHTALLT 136
GQLGLG S +R P+ I FN D+ A + + CG H+A++T
Sbjct: 224 GGEGQLGLG---SCIRIVSFPQHIPCFNMTDTGNARSGVPIPGSYIKAIACGGRHSAVIT 280
Query: 137 HRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
TFG G GQ+G G+T+ L P V L Q + +V + GL+HT +
Sbjct: 281 D--------TGAVLTFGWGLYGQIGQGSTEDELSPSHVSTL-QGLSIVGIAAGLWHTLCI 331
Query: 197 SSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD--PVQVACG 252
++ GDV+S+G + LG+ N + +SP LI P D V VACG
Sbjct: 332 TNTGDVYSFGGNQFGQLGVGGNNA--------ELSPRLID-----APLLGDELSVAVACG 378
Query: 253 AAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
A H+V++T G K+++WG + G LG G
Sbjct: 379 ARHSVVLTGSG-KIFAWGWNKYGQLGLG 405
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 27/195 (13%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 58
S I ++ GG S I + GA+ +G + STE +PS V G +
Sbjct: 264 SYIKAIACGGRHSAVITDTGAVLTFGWGLYGQIGQGSTE------DELSPSHVSTLQGLS 317
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+V +A G H + + + G+ Y S+G N GQLG+G + L P++I+
Sbjct: 318 IVGIAAGLWHTLCITNTGDVY--------SFGGNQFGQLGVGGNNAELSPRLIDAPLLGD 369
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
+V V CG+ H+ +LT + + +G + GQLG G + +P QV +
Sbjct: 370 ELSV-AVACGARHSVVLTGSGK--------IFAWGWNKYGQLGLGDCNNRDLPMQVT-MN 419
Query: 179 QYVYLVSVDCGLFHT 193
S+ CG +HT
Sbjct: 420 DGGRAASIACGWWHT 434
>gi|348534545|ref|XP_003454762.1| PREDICTED: hypothetical protein LOC100691941 [Oreochromis
niloticus]
Length = 1536
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/341 (26%), Positives = 141/341 (41%), Gaps = 91/341 (26%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFT---PSPVWDFHGHTVVKVA 63
+ G + I G L+M+G S+ G L S T P+ V V VA
Sbjct: 41 IACGDEHTALITENGKLFMFG------SNNWGQLGLGSKVTVNKPTCVKALKSEKVQLVA 94
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
CG H + + G+ Y+ G N+ GQLGLGD E R K ++ F+ P +
Sbjct: 95 CGRNHTLICTAKGK--------VYASGGNSEGQLGLGDCEERTSFKRLDFFDSQGPIKML 146
Query: 124 E------------------------------------------------VTCGSFHTALL 135
V+CG +H+AL+
Sbjct: 147 AAGSNTSAALTVSGKLFMWGDNTEGQIGLGKESQVSSPQEVSVGQPISWVSCGYYHSALV 206
Query: 136 THRKRPNDMLESMCWTFGLGENGQLGHGTTQ--SALVPEQVKELPQYVYLVSVDCGLFHT 193
T ++ +TFG ++G+LG GT Q VP+ VK + + V V+ CG HT
Sbjct: 207 T--------VDGALYTFGERDSGKLGLGTHQLPGHRVPQLVKSIKEPVRQVA--CGGGHT 256
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
V + G+V+++G+ + G + + ++ P L+ H K + QV CG
Sbjct: 257 -VALAEGNVYTFGLGQ-FGQLGHGTFIF----ESRVPRLVE----HFKKGR-ACQVVCGE 305
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKT--IDFFAPAIVL 292
HT ++T+DG L+++G GR G LG G+ + F P + L
Sbjct: 306 NHTAVITEDGL-LYTFGDGRHGKLGLGEENFTNQFKPTLCL 345
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 133/335 (39%), Gaps = 97/335 (28%)
Query: 17 IDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAG 76
I +GA++ +G D+ PS W +++ACG EH + G
Sbjct: 9 IPESGAVFTFGKSKFADN------------IPSKFW-LKNDIPLRIACGDEHTALITENG 55
Query: 77 ETY--------------------------------------KGEDLVC------YSWGAN 92
+ + + L+C Y+ G N
Sbjct: 56 KLFMFGSNNWGQLGLGSKVTVNKPTCVKALKSEKVQLVACGRNHTLICTAKGKVYASGGN 115
Query: 93 NNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTF 152
+ GQLGLGD E R K ++ F+ P + + GS +A LT + + +
Sbjct: 116 SEGQLGLGDCEERTSFKRLDFFDSQGPIKM--LAAGSNTSAALT--------VSGKLFMW 165
Query: 153 GLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--- 209
G GQ+G G P++V + Q + VS CG +H+++V+ G ++++G
Sbjct: 166 GDNTEGQIGLGKESQVSSPQEV-SVGQPISWVS--CGYYHSALVTVDGALYTFGERDSGK 222
Query: 210 -GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV-QVACGAAHTVLVTDDGYKLW 267
GLG T G + ++ S ++PV QVACG HTV + + ++
Sbjct: 223 LGLG-------THQLPGHRVPQLVKS--------IKEPVRQVACGGGHTVALAEG--NVY 265
Query: 268 SWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQ 302
++G G+ G LG G I F + P L E FK+
Sbjct: 266 TFGLGQFGQLGHGTFI--FESRV---PRLVEHFKK 295
>gi|330837469|ref|YP_004412110.1| cell wall/surface repeat protein [Sphaerochaeta coccoides DSM
17374]
gi|329749372|gb|AEC02728.1| cell wall/surface repeat protein [Sphaerochaeta coccoides DSM
17374]
Length = 874
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 119/298 (39%), Gaps = 38/298 (12%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF-----TPSPVWDFH 55
M+ + +V AG ++ + G LW GN G L S TP V
Sbjct: 552 MTDVAAVSAGYYHTMIVKENGTLWATGNNQY------GQLGLASILGTDKNTPVKVTSM- 604
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE--T 113
G V V+ GS H + L +D ++ G NN GQLG G +S+ P ++ T
Sbjct: 605 GAAVKAVSAGSYHTMIL--------KKDGTLWATGRNNYGQLGDGTTDSKGMPVQVKAST 656
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
D V V+ G +HT +L + W G E GQLG GT+ P Q
Sbjct: 657 TPNDFMTDVEAVSTGVYHTMILKK--------DGTLWATGYNEYGQLGDGTSNDRSTPVQ 708
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
V + V VS G HT ++ G +W+ G L + S T +P+ +
Sbjct: 709 VLSMGADVAAVS--AGENHTMILKKDGTLWATGQNTYGQLGDSDSGTNKN-----TPVQV 761
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ D V+ G HT+++ DG LW+ GR G LG G D P V
Sbjct: 762 KDDTDISGFMTDVAAVSAGYGHTMILKMDG-TLWAIGRNEYGQLGVGNHNDTSTPVQV 818
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 81/201 (40%), Gaps = 30/201 (14%)
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V V+ SFHT LL ++ W G + QLG G + P +V
Sbjct: 507 VKSVSFKSFHTMLL--------KIDGTLWATGQNTHSQLGVGGNTNINTPVKV-----MT 553
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ +V G +HT +V G +W+ G + LGL +N +P+ ++ G
Sbjct: 554 DVAAVSAGYYHTMIVKENGTLWATGNNQYGQLGLASILGTDKN------TPVKVTSMGAA 607
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEE 299
V+ G+ HT+++ DG LW+ GR G LG G T P V +
Sbjct: 608 VKA------VSAGSYHTMILKKDG-TLWATGRNNYGQLGDGTTDSKGMPVQVKASTTPND 660
Query: 300 FKQD--ELNTGGLDDEIKTKD 318
F D ++TG I KD
Sbjct: 661 FMTDVEAVSTGVYHTMILKKD 681
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 22/210 (10%)
Query: 83 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPN 142
D ++ G N + QLG+G + P + T V V+ G +HT ++ + N
Sbjct: 523 DGTLWATGQNTHSQLGVGGNTNINTPVKVMT-------DVAAVSAGYYHTMIV----KEN 571
Query: 143 DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV 202
L W G + GQLG + VK + +V G +HT ++ G +
Sbjct: 572 GTL----WATGNNQYGQLGLASILGTDKNTPVKVTSMGAAVKAVSAGSYHTMILKKDGTL 627
Query: 203 WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD 262
W+ G L + ++ P+ + + D V+ G HT+++ D
Sbjct: 628 WATGRNNYGQLGDGTTDSKGM------PVQVKASTTPNDFMTDVEAVSTGVYHTMILKKD 681
Query: 263 GYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
G LW+ G G LG G + D P VL
Sbjct: 682 G-TLWATGYNEYGQLGDGTSNDRSTPVQVL 710
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 59/149 (39%), Gaps = 24/149 (16%)
Query: 70 VALVSAGETYK---GEDLVCYSWGANNNGQLGLGDRESRLRPKI-------IETFNQDSP 119
VA VSAGE + +D ++ G N GQLG D + + I F D
Sbjct: 716 VAAVSAGENHTMILKKDGTLWATGQNTYGQLGDSDSGTNKNTPVQVKDDTDISGFMTD-- 773
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V V+ G HT +L ++ W G E GQLG G P QV +
Sbjct: 774 --VAAVSAGYGHTMIL--------KMDGTLWAIGRNEYGQLGVGNHNDTSTPVQVSSMGS 823
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
V +V G +T ++ G +W+ G
Sbjct: 824 DV--AAVFAGEAYTMILKKDGSLWATGFN 850
>gi|118375248|ref|XP_001020809.1| hypothetical protein TTHERM_00410160 [Tetrahymena thermophila]
gi|89302576|gb|EAS00564.1| hypothetical protein TTHERM_00410160 [Tetrahymena thermophila SB210]
Length = 4058
Score = 80.1 bits (196), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 17/153 (11%)
Query: 54 FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET 113
F +V+++ACG + L + + + SWG N +G LGLGD R++P ++
Sbjct: 2328 FSMFSVIQIACGWSFCMILTRSHQLF--------SWGDNRSGNLGLGDTRYRIKPSLV-L 2378
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
P+ V + C + H+A + L+ +T+G G NGQLG + L+P++
Sbjct: 2379 LEFGKPFQVRFIDCQAQHSAAI--------QLDGKLYTWGQGLNGQLGINAQSNMLLPQR 2430
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
V + + + V CG+FH + +++ G ++WG
Sbjct: 2431 VGGILEQKNITQVSCGVFHMACITNDGFCYTWG 2463
Score = 73.9 bits (180), Expect = 1e-10, Method: Composition-based stats.
Identities = 66/292 (22%), Positives = 132/292 (45%), Gaps = 53/292 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSP--VWDFHGHTVV 60
+I + AG +AI+N ++ WG ++ + G + SP V G+ +
Sbjct: 658 RITYIAAGYEYCMAIENKRLVYAWGR----NTDGQLGIGKTQYYVESPQMVLGLEGNLMK 713
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSP 119
+ACG H + L G+ Y S G++ +G+LGLG+R ++L+P++I ++
Sbjct: 714 AIACGENHTLFLTDTGQVY--------SCGSSKDGKLGLGNRTNTQLQPQLITNLSK--- 762
Query: 120 WAVYEVTCGSFHTALLT------------HRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
V +++CG H+ L H ++ N ++ + +T+G +LGHG ++
Sbjct: 763 --VEQISCGQSHSMALAQDDFFKQDDDEEHARQIN--VKMVVYTWGNAWESKLGHGDREN 818
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLC-PNASL------- 219
P +++ + Y + G H++ +++ ++ WG K G P+ ++
Sbjct: 819 LYEPTKIQSNYLFKY---ISAGSHHSAALTTDDNLVVWGPYKYFGHTKPDENIKGKKVIT 875
Query: 220 TRNEAGDAISPILISGNGPHGPKFQDPVQVAC-GAAHTVLVTDDGYKLWSWG 270
T++E + + P L PK + V+ C G T +V K++ +G
Sbjct: 876 TQHEYHEFMKPTL-------HPKITEKVRHVCLGDKTTFIVAKKDNKIYQYG 920
Score = 72.8 bits (177), Expect = 3e-10, Method: Composition-based stats.
Identities = 64/223 (28%), Positives = 102/223 (45%), Gaps = 33/223 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE-TFNQD 117
VV++ CG + L TY + L +WG N+ G +G GD + + +PKII+ N+
Sbjct: 261 VVQICCGLNFCLIL-----TYNFQVL---AWGDNSYGNIGTGDLDYQEKPKIIQFDENKG 312
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+ ++CG+ H A ++ L +T+G G GQLGH + +P VK
Sbjct: 313 DDSRIQFISCGANHCAAVS--------LSGKLYTWGQGIQGQLGHQNVMNLSIPTAVKSE 364
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
Q +V V CG HT +++ G +S+G K N L + P+ I
Sbjct: 365 LQEKKVVYVSCGGAHTVCLTNEGYAYSFGNNK------NGQLGLGDQEQRNVPVKIQ--- 415
Query: 238 PHGPKFQD--PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
K Q+ V V CG +T ++T G K+++ G + LG
Sbjct: 416 ----KLQNYFIVNVVCGMNNTFILTQVG-KIFACGSNQHNKLG 453
Score = 57.8 bits (138), Expect = 1e-05, Method: Composition-based stats.
Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 45/215 (20%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNC-----PLPDSSTEGGF-------------SLV 43
S+ V+ G S+A+ NAG L++WG+ + D E + +LV
Sbjct: 2651 SEFVDVQLGTFHSMALTNAGELYIWGSNESSQHAVDDLQIEQAYVDQAISKIKINVQTLV 2710
Query: 44 SSFTPSPVWDF---HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG 100
+S PS V F V +ACG+E+ +A+ + + Y WG N+ GQLG+G
Sbjct: 2711 TSSLPSLVNFFDIKENRRVSFIACGAEYCMAIENRRKV--------YGWGKNDQGQLGIG 2762
Query: 101 DRESRL-RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQ 159
+ + +P ++ + +V CG HT L+ E ++ G +G+
Sbjct: 2763 AISTIVHKPTEVQGLEG---LLMKQVACGQVHTLFLSE--------EGCVYSCGSPTDGK 2811
Query: 160 LGHGTTQS-ALVPEQVKELPQYVYLVSVDCGLFHT 193
LG G + L P +++ L + + V CG H+
Sbjct: 2812 LGLGKRDAIQLFPMKIQSLAK---IDKVACGYTHS 2843
Score = 53.9 bits (128), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 20/167 (11%)
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK-E 176
S ++V ++ CG +LT + +++G +G LG G T+ + P V E
Sbjct: 2329 SMFSVIQIACGWSFCMILTRSHQ--------LFSWGDNRSGNLGLGDTRYRIKPSLVLLE 2380
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ + +DC H++ + G +++WG +GL N L N + + P + G
Sbjct: 2381 FGKPFQVRFIDCQAQHSAAIQLDGKLYTWG--QGL----NGQLGINAQSNMLLPQRVGGI 2434
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
++ QV+CG H +T+DG+ ++WG +G LG K +
Sbjct: 2435 LEQ----KNITQVSCGVFHMACITNDGF-CYTWGSNTNGQLGLDKDL 2476
Score = 53.9 bits (128), Expect = 2e-04, Method: Composition-based stats.
Identities = 68/282 (24%), Positives = 110/282 (39%), Gaps = 81/282 (28%)
Query: 53 DFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE--------- 103
DF V V G+ H +AL +AGE Y WG+N + Q + D +
Sbjct: 2647 DFISSEFVDVQLGTFHSMALTNAGEL--------YIWGSNESSQHAVDDLQIEQAYVDQA 2698
Query: 104 -SRLR-----------PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWT 151
S+++ P ++ F+ V + CG+ + + +R++
Sbjct: 2699 ISKIKINVQTLVTSSLPSLVNFFDIKENRRVSFIACGAEYCMAIENRRK----------V 2748
Query: 152 FGLGEN--GQLGHGTTQSAL-VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG-- 206
+G G+N GQLG G + + P +V+ L + + + V CG HT +S G V+S G
Sbjct: 2749 YGWGKNDQGQLGIGAISTIVHKPTEVQGL-EGLLMKQVACGQVHTLFLSEEGCVYSCGSP 2807
Query: 207 MEKGLGLCPNASLTRNEAGDAIS--PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
+ LGL DAI P+ I +VACG H++ + +D Y
Sbjct: 2808 TDGKLGLGKR---------DAIQLFPMKIQ-------SLAKIDKVACGYTHSLALGEDVY 2851
Query: 265 ------------------KLWSWGRGRSGVLGTGKTIDFFAP 288
++SWG LG G+ + F P
Sbjct: 2852 VDEDFDDFNLLQNEFNKKVVYSWGSAYESKLGHGEKENLFEP 2893
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 45/219 (20%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLP-------------DSSTEGGFSLVSS--- 45
+ I ++ G ++A+ NAG +++WG+ + D S E +++ +
Sbjct: 581 NDIVDIELGVFHTMALTNAGEIYVWGSNQMCQHGCISNIIRQEYDESNEKNINIIQNDIS 640
Query: 46 --FTPSPVWDFH---GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG 100
PS V F+ + +A G E+ +A+ + + LV Y+WG N +GQLG+G
Sbjct: 641 KETLPSVVSFFNIKENRRITYIAAGYEYCMAI-------ENKRLV-YAWGRNTDGQLGIG 692
Query: 101 DRESRLR-PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQ 159
+ + P+++ + + + CG HT LT ++ G ++G+
Sbjct: 693 KTQYYVESPQMVLGLEGN---LMKAIACGENHTLFLTD--------TGQVYSCGSSKDGK 741
Query: 160 LGHGT-TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
LG G T + L P+ + L + + + CG H+ ++
Sbjct: 742 LGLGNRTNTQLQPQLITNLSK---VEQISCGQSHSMALA 777
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 61/276 (22%), Positives = 100/276 (36%), Gaps = 70/276 (25%)
Query: 53 DFHGHTVVKVACGSEHVVALVSAGETYK-GEDLVC------------YSWGANNNGQLGL 99
DF + +V + G H +AL +AGE Y G + +C Y N +
Sbjct: 577 DFISNDIVDIELGVFHTMALTNAGEIYVWGSNQMCQHGCISNIIRQEYDESNEKNINIIQ 636
Query: 100 GDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQ 159
D P ++ FN + + G + + KR + + +G +GQ
Sbjct: 637 NDISKETLPSVVSFFNIKENRRITYIAAG-YEYCMAIENKR-------LVYAWGRNTDGQ 688
Query: 160 LGHGTTQSALVPEQVKELPQYV------YLVSVDCGLFHTSVVSSAGDVWSWGMEK---- 209
LG G TQ + E PQ V + ++ CG HT ++ G V+S G K
Sbjct: 689 LGIGKTQYYV------ESPQMVLGLEGNLMKAIACGENHTLFLTDTGQVYSCGSSKDGKL 742
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK---- 265
GLG N + P LI+ Q++CG +H++ + D +
Sbjct: 743 GLG---------NRTNTQLQPQLIT-------NLSKVEQISCGQSHSMALAQDDFFKQDD 786
Query: 266 -------------LWSWGRGRSGVLGTGKTIDFFAP 288
+++WG LG G + + P
Sbjct: 787 DEEHARQINVKMVVYTWGNAWESKLGHGDRENLYEP 822
Score = 45.1 bits (105), Expect = 0.064, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQD 117
+ +V+CG H+ + + G CY+WG+N NGQLGL ++ P ++E
Sbjct: 2440 ITQVSCGVFHMACITNDG--------FCYTWGSNTNGQLGLDKDLPQINYPCVVERLQS- 2490
Query: 118 SPWAVYEVTCGSFHTALLTHRKR 140
+ + +VTCG +T + R
Sbjct: 2491 --YFIIQVTCGYNNTFFFSQNGR 2511
Score = 43.1 bits (100), Expect = 0.27, Method: Composition-based stats.
Identities = 55/234 (23%), Positives = 100/234 (42%), Gaps = 43/234 (18%)
Query: 61 KVACGSEHVVALVSAGETYKGEDL-------------VCYSWGANNNGQLGLGDRESRLR 107
KVACG H +AL + Y ED V YSWG+ +LG G++E+
Sbjct: 2835 KVACGYTHSLAL--GEDVYVDEDFDDFNLLQNEFNKKVVYSWGSAYESKLGHGEKENLFE 2892
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT--- 164
P I+ + ++ ++ G H+A + K N ++ FG + +
Sbjct: 2893 PNRIQ-----ANFSFRDIFAGGHHSAAID--KEHNLIVWGPYIYFGYQKPEEKNKKNYRQ 2945
Query: 165 -----TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM--EKGLGLCP-N 216
+ L P Q +L Q V V++ G ++ V+++ ++ WG+ + C N
Sbjct: 2946 DVNEFIRPTLHPRQ--QLIQQVQKVAL--GDKYSIVLNNINQIFQWGVFDKTYENKCKEN 3001
Query: 217 ASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG 270
+LTRN+ +++ + N P Q+A H L++ + +L++WG
Sbjct: 3002 PNLTRNQINESLMINIQKINAPS----STITQIAVANNHAALISKN--QLYTWG 3049
Score = 39.3 bits (90), Expect = 3.5, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+Q+ACG + +++T ++L+SWG RSG LG G T P++VL
Sbjct: 2334 IQIACGWSFCMILTRS-HQLFSWGDNRSGNLGLGDTRYRIKPSLVL 2378
>gi|86129504|ref|NP_001034387.1| probable E3 ubiquitin-protein ligase HERC3 [Gallus gallus]
gi|60098971|emb|CAH65316.1| hypothetical protein RCJMB04_17g7 [Gallus gallus]
Length = 1050
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 119/287 (41%), Gaps = 63/287 (21%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P P+ G +V VACG H VAL G+ + SWGA ++GQLGL E +
Sbjct: 75 PEPIGALAGQHIVHVACGESHSVALSDQGQVF--------SWGAGSDGQLGLTTIEDAVT 126
Query: 108 -PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-T 165
P++I+ NQ + + +++CG++H L + +T+G GQLG G
Sbjct: 127 VPRLIKKLNQQT---ILQISCGNWHCLALA--------ADGQFFTWGQNSYGQLGLGKEC 175
Query: 166 QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCP-------- 215
S P++VK L + L V G H+ +S +G V+ WG LGL
Sbjct: 176 PSQASPQRVKSLDG-IPLAQVAAGGAHSFALSLSGAVFGWGKNSSGQLGLSDERDRESPC 234
Query: 216 NASLTRNEAGDAISP-------------ILISGNGPHGPKFQDPV--------------- 247
+ L R++ IS + G G G D +
Sbjct: 235 HVKLLRSQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGS 294
Query: 248 ---QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 295 EVSQIACGRHHTLAFVPSSGMIYAFGCGTRGQLGTGHTCNVKCPSPV 341
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 115/253 (45%), Gaps = 48/253 (18%)
Query: 48 PSP-VWDF-HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P P V+ F H V +VACG H V L+ GE Y + G N GQLG S+
Sbjct: 23 PEPQVYGFIHDRNVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLGHESEGSK 74
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
P + + V CG H+ L+ + + +++G G +GQLG T
Sbjct: 75 PEP-----IGALAGQHIVHVACGESHSVALSDQGQ--------VFSWGAGSDGQLGLTTI 121
Query: 166 QSAL-VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGL-CPN-AS 218
+ A+ VP +K+L Q ++ + CG +H +++ G ++WG + GLG CP+ AS
Sbjct: 122 EDAVTVPRLIKKLNQQT-ILQISCGNWHCLALAADGQFFTWGQNSYGQLGLGKECPSQAS 180
Query: 219 LTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
R ++ D I P+ QVA G AH+ ++ G ++ WG+ SG LG
Sbjct: 181 PQRVKSLDGI-PL---------------AQVAAGGAHSFALSLSG-AVFGWGKNSSGQLG 223
Query: 279 TGKTIDFFAPAIV 291
D +P V
Sbjct: 224 LSDERDRESPCHV 236
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 25/174 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFS-LVSSFTPSPVWDFHGHTVVKV 62
+ V AGG S A+ +GA++ WG +SS + G S +P V VV +
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWGK----NSSGQLGLSDERDRESPCHVKLLRSQKVVYI 247
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWA 121
+CG EH L +G + ++GA + GQLG + P+ ++E +
Sbjct: 248 SCGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE---- 295
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V ++ CG HT P+ M + FG G GQLG G T + P VK
Sbjct: 296 VSQIACGRHHTLAFV----PSS---GMIYAFGCGTRGQLGTGHTCNVKCPSPVK 342
>gi|326511212|dbj|BAJ87620.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 511
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 124/285 (43%), Gaps = 57/285 (20%)
Query: 33 DSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGAN 92
DSST G +L S P V G + VA G H +AL G+ + WG
Sbjct: 233 DSSTSGDENL--SAPPCVVTFNTGVKITAVAAGGRHTLALSDFGQVW--------GWGYG 282
Query: 93 NNGQLGLGDR-ESRLRPKII-----ETFNQDSPWA------------------VYEVTCG 128
GQLGLG R + P I ++++D P A V + CG
Sbjct: 283 GEGQLGLGSRIRTVSSPHTIPCIESASYSKDRPSAMKGNKNAEGQINKVMGSRVTAIACG 342
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
H+ ++T FG G GQ G G T L P V + V + V
Sbjct: 343 GRHSVVVTD--------SGALLAFGWGLYGQCGQGNTDDVLSPTCVSAI-LGVKMQDVAA 393
Query: 189 GLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 246
GL+HT +S+ GDV+S+G + LG+ + + T + DA P L + ++
Sbjct: 394 GLWHTVSISADGDVYSFGGNQFGQLGIGSDQAETIPKLVDA--PSL---------ENKNA 442
Query: 247 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V+CGA H+ ++TD+G +++ WG + G LG G ++D P IV
Sbjct: 443 RSVSCGARHSAIITDEG-EVFCWGWNKYGQLGLGDSMDRNVPCIV 486
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 116/285 (40%), Gaps = 58/285 (20%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSP------------ 50
+I +V AGG +LA+ + G +W WG VSS P
Sbjct: 256 KITAVAAGGRHTLALSDFGQVWGWGYGGEGQLGLGSRIRTVSSPHTIPCIESASYSKDRP 315
Query: 51 ------------VWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG 98
+ G V +ACG H V + +G L+ + WG GQ G
Sbjct: 316 SAMKGNKNAEGQINKVMGSRVTAIACGGRHSVVVTDSGA------LLAFGWGLY--GQCG 367
Query: 99 LGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENG 158
G+ + L P + + +V G +HT ++ + ++FG + G
Sbjct: 368 QGNTDDVLSPTCVSAILGVK---MQDVAAGLWHTVSIS--------ADGDVYSFGGNQFG 416
Query: 159 QLGHGTTQSALVPEQVKELP--QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPN 216
QLG G+ Q+ +P+ V + P + SV CG H+++++ G+V+ WG K L
Sbjct: 417 QLGIGSDQAETIPKLV-DAPSLENKNARSVSCGARHSAIITDEGEVFCWGWNKYGQLGLG 475
Query: 217 ASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
S+ RN P ++ +G H P+ V+ G HT+++ +
Sbjct: 476 DSMDRN------VPCIVPVDGYH------PLNVSGGWWHTLVLAE 508
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 99/201 (49%), Gaps = 32/201 (15%)
Query: 2 SQICSVKAGGMMSLAIDNAGAL----W-MWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHG 56
S++ ++ GG S+ + ++GAL W ++G C G + +P+ V G
Sbjct: 334 SRVTAIACGGRHSVVVTDSGALLAFGWGLYGQC--------GQGNTDDVLSPTCVSAILG 385
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
+ VA G H V++ + G+ YS+G N GQLG+G ++ PK+++ +
Sbjct: 386 VKMQDVAAGLWHTVSISADGDV--------YSFGGNQFGQLGIGSDQAETIPKLVDAPSL 437
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
++ A V+CG+ H+A++T D E CW G + GQLG G + VP V
Sbjct: 438 ENKNA-RSVSCGARHSAIIT------DEGEVFCW--GWNKYGQLGLGDSMDRNVPCIVP- 487
Query: 177 LPQYVYLVSVDCGLFHTSVVS 197
+ Y + ++V G +HT V++
Sbjct: 488 VDGY-HPLNVSGGWWHTLVLA 507
>gi|407003324|gb|EKE19915.1| hypothetical protein ACD_8C00086G0006 [uncultured bacterium]
Length = 2770
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 118/292 (40%), Gaps = 41/292 (14%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + + AG SLA+ + G W WG+ G S V+S P V G V
Sbjct: 685 LTGVEQISAGEGHSLALRSDGTAWAWGDNAY---GMLGNNSTVTSSIPVQVSGLTG--VS 739
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
V G H +AL S G ++WG N GQLG G RL P +
Sbjct: 740 SVKAGRLHSMALKSDG--------TVWAWGYNTEGQLGDGSTTQRLVPVQVSGLED---- 787
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++ G +H+ ++ + W +G NGQLG+ +T +LVP QV P
Sbjct: 788 -VIAISAGDYHSMVIKS--------DGTVWAWGRNSNGQLGNNSTTGSLVPVQV---PGL 835
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ + G ++ V S G +WG LC +++ R + P+ +S
Sbjct: 836 TGVALISAGTNTSAAVKSDGTALAWGSNTYGQLCDGSNIQR------LIPVQVS-----E 884
Query: 241 PKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
P + + +H++++ DG +W GR G +G D P L
Sbjct: 885 PVGVGALSMVVANSHSLILKLDG-TVWGCGRNDYGPIGNNSITDSKVPVQTL 935
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 115/290 (39%), Gaps = 45/290 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++ + S+ AG SLA+ + G +W WG G S + S P V G T +
Sbjct: 365 LTGVASISAGYDYSLAVKSDGTVWAWGRNYY---GQFGNNSTIDSLVPIQVSGLTGVTSI 421
Query: 61 KVACGSE--HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ H +AL S G + WG N+ GQLG L P ++
Sbjct: 422 SATSSNNYSHSLALKSDG--------TVWGWGYNSTGQLGNNSATQSLVP--VQALGLT- 470
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V ++ GS H+ L + W +G +GQLG+ +T +LVP QV P
Sbjct: 471 --GVVSISAGSNHSMALKS--------DGTAWIWGGNSDGQLGNNSTAQSLVPVQV---P 517
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ ++ G +H+ + S G VW+WG L N++ ++ PI +
Sbjct: 518 GLSGVSAISAGNYHSMALKSDGTVWAWGRNSSGQLGNNSTTV------SLVPIQV----- 566
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
V+ G H++ + DG +W WG + + +D P
Sbjct: 567 ----LTGTTSVSAGTYHSMALKSDG-AVWGWGNNEYKKIISNTNLDQLVP 611
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 115/295 (38%), Gaps = 47/295 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
++++ ++ A S+A+ + G LW WG + G S+ S P V
Sbjct: 317 LTEVSAISAAFGHSMALKSDGTLWTWG---YNNRGQLGNNSITQSLVP-----------V 362
Query: 61 KVACGSEHVVALVSAGETYK---GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V G VA +SAG Y D ++WG N GQ G L P I+
Sbjct: 363 QVLTG----VASISAGYDYSLAVKSDGTVWAWGRNYYGQFGNNSTIDSLVP--IQVSGLT 416
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
++ + ++ +L + W +G GQLG+ + +LVP Q L
Sbjct: 417 GVTSISATSSNNYSHSLALKS-------DGTVWGWGYNSTGQLGNNSATQSLVPVQALGL 469
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
+VS+ G H+ + S G W WG + L N ++ P+ +
Sbjct: 470 TG---VVSISAGSNHSMALKSDGTAWIWGGNS------DGQLGNNSTAQSLVPVQV---- 516
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
P ++ G H++ + DG +W+WGR SG LG T P VL
Sbjct: 517 ---PGLSGVSAISAGNYHSMALKSDG-TVWAWGRNSSGQLGNNSTTVSLVPIQVL 567
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 105/281 (37%), Gaps = 43/281 (15%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
SLA+ + +W WG S G + PV D G V +++ G H +AL
Sbjct: 648 SLALKSDKTVWAWG---YGGSGVLGNGTGEQMLVGYPVRDLTG--VEQISAGEGHSLALR 702
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G ++WG N G LG + P + V V G H+
Sbjct: 703 SDG--------TAWAWGDNAYGMLGNNSTVTSSIPVQVSGLT-----GVSSVKAGRLHSM 749
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L + W +G GQLG G+T LVP QV L ++++ G +H+
Sbjct: 750 ALKS--------DGTVWAWGYNTEGQLGDGSTTQRLVPVQVSGLED---VIAISAGDYHS 798
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
V+ S G VW+WG N L N ++ P+ + P ++ G
Sbjct: 799 MVIKSDGTVWAWGRNS------NGQLGNNSTTGSLVPVQV-------PGLTGVALISAGT 845
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
+ V DG L +WG G L G I P V P
Sbjct: 846 NTSAAVKSDGTAL-AWGSNTYGQLCDGSNIQRLIPVQVSEP 885
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 110/293 (37%), Gaps = 49/293 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNC---PLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
+ V AG +LA+ + G +W WG L D ST ++ P V +
Sbjct: 269 KYAQVVAGYYHNLALKSDGTVWAWGYNYYGRLGDGST------INRIVPVQVSGLTEVSA 322
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ A G H +AL S G ++WG NN GQLG L P + T
Sbjct: 323 ISAAFG--HSMALKSDG--------TLWTWGYNNRGQLGNNSITQSLVPVQVLT------ 366
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V ++ G ++ + + W +G GQ G+ +T +LVP QV L
Sbjct: 367 -GVASISAGYDYSLAVKS--------DGTVWAWGRNYYGQFGNNSTIDSLVPIQVSGLTG 417
Query: 180 YVYLVSVDCGLF-HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ + + H+ + S G VW WG L N A ++ P+ G
Sbjct: 418 VTSISATSSNNYSHSLALKSDGTVWGWGYNS------TGQLGNNSATQSLVPVQALG--- 468
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V ++ G+ H++ + DG W WG G LG T P V
Sbjct: 469 ----LTGVVSISAGSNHSMALKSDG-TAWIWGGNSDGQLGNNSTAQSLVPVQV 516
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 124/313 (39%), Gaps = 53/313 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF---SLVSSFTPSPVWDFHGH 57
++ + SVKAG + S+A+ + G +W WG +TEG S P V
Sbjct: 735 LTGVSSVKAGRLHSMALKSDGTVWAWG------YNTEGQLGDGSTTQRLVPVQVSGLED- 787
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+ ++ G H + + S G ++WG N+NGQLG L P +
Sbjct: 788 -VIAISAGDYHSMVIKSDG--------TVWAWGRNSNGQLGNNSTTGSLVPVQVPGLT-- 836
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V ++ G+ +A + ++ W G GQL G+ L+P QV E
Sbjct: 837 ---GVALISAGTNTSAAVKSDGT------ALAW--GSNTYGQLCDGSNIQRLIPVQVSE- 884
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P V +S+ H+ ++ G VW G G N S+T D+ P+ G
Sbjct: 885 PVGVGALSMVVANSHSLILKLDGTVWGCG-RNDYGPIGNNSIT-----DSKVPVQTLG-- 936
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP-AIVLWPPL 296
V ++ G H++ + DG +W WG G LG T AP A W
Sbjct: 937 -----LAGVVSISAGLYHSMALKSDG-TIWGWGYNGYGQLGDNSTTSRLAPVASKRW--- 987
Query: 297 TEEFKQDELNTGG 309
F D LN GG
Sbjct: 988 --FFPDDYLNLGG 998
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 94/236 (39%), Gaps = 44/236 (18%)
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+V G H +AL S G ++WG N G+LG G +R+ P + +
Sbjct: 272 QVVAGYYHNLALKSDG--------TVWAWGYNYYGRLGDGSTINRIVPVQVSGLTE---- 319
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V ++ H+ L + WT+G GQLG+ + +LVP QV
Sbjct: 320 -VSAISAAFGHSMALKS--------DGTLWTWGYNNRGQLGNNSITQSLVPVQV-----L 365
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHG 240
+ S+ G ++ V S G VW+WG N+++ D++ PI +SG
Sbjct: 366 TGVASISAGYDYSLAVKSDGTVWAWGRNYYGQFGNNSTI------DSLVPIQVSG----- 414
Query: 241 PKFQDPVQVACGA----AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
++ + +H++ + DG +W WG +G LG P L
Sbjct: 415 --LTGVTSISATSSNNYSHSLALKSDG-TVWGWGYNSTGQLGNNSATQSLVPVQAL 467
>gi|432106315|gb|ELK32196.1| RCC1 and BTB domain-containing protein 1 [Myotis davidii]
Length = 531
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 105/251 (41%), Gaps = 33/251 (13%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
S+ TP + G + ++ GS V L + ED V Y+WG N QLG G
Sbjct: 61 STLTPKKLEALCGKKIKSLSYGSGPHVLLST-------EDGVVYAWGHNGYSQLGNGTTN 113
Query: 104 SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
+ P I+ V EV CGS H+ L + + +G GQ+G G
Sbjct: 114 QGIAP--IQVCTNLLIKQVVEVACGSHHSVALA--------ADGEVFAWGYNNCGQVGSG 163
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTR 221
+T + P +V +V + CG + V G+V+ WG LGL N +
Sbjct: 164 STANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDTGEVYGWGYNGNGQLGLGNNVNQLT 223
Query: 222 NEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
A+ + ++ Q+ CG AHT+ +TD+G L++WG G LGTG
Sbjct: 224 PVRVAALHSVCVN-------------QIVCGYAHTLALTDEGL-LYAWGANTYGQLGTGN 269
Query: 282 TIDFFAPAIVL 292
+ +P ++
Sbjct: 270 KNNLLSPTHIM 280
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 126/321 (39%), Gaps = 52/321 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + VV+VACGS H VAL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLI-----KQVVEVACGSHHSVALAADGE 148
Query: 78 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
+ +WG NN GQ+G G ++ P+ + N V + CG T
Sbjct: 149 VF--------AWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKRVVGIACGQ------TS 192
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
D E W G NGQLG G + L P +V L V + + CG HT ++
Sbjct: 193 SMAVLDTGEVYGW--GYNGNGQLGLGNNVNQLTPVRVAAL-HSVCVNQIVCGYAHTLALT 249
Query: 198 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTV 257
G +++WG T + G L+S K + AC +AHT
Sbjct: 250 DEGLLYAWGAN-----------TYGQLGTGNKNNLLSPTHIMVEKERVVEIAACHSAHTS 298
Query: 258 LVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEEFKQDELNTG 308
G ++ WG RG+S VL T FA V W L+ E +D L
Sbjct: 299 AAKTQGGHVYMWGQCRGQSVVLPHLTHLSCTDDVFACFATPAVSWRLLSVE-HEDFLTVA 357
Query: 309 GLDDEIKTKDLEGAEERDEKL 329
E K+ + E D K
Sbjct: 358 ----ESLKKEFDSPETADLKF 374
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ ++ + G S+A+ + G ++ WG + G + V+ TP V H V
Sbjct: 180 IKRVVGIACGQTSSMAVLDTGEVYGWG---YNGNGQLGLGNNVNQLTPVRVAALHSVCVN 236
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++ CG H +AL G + Y+WGAN GQLG G++ + L P I +
Sbjct: 237 QIVCGYAHTLALTDEG--------LLYAWGANTYGQLGTGNKNNLLSPTHIMV---EKER 285
Query: 121 AVYEVTCGSFHTA 133
V C S HT+
Sbjct: 286 VVEIAACHSAHTS 298
>gi|395541966|ref|XP_003772907.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3, partial
[Sarcophilus harrisii]
Length = 638
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 134/296 (45%), Gaps = 46/296 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
I V G SLA+ + G L+ WG + L ++TE ++ P + + +
Sbjct: 86 HIVHVACGESHSLALSDQGQLFSWGAGSDGQLGHTTTEDSVAI-----PRLIKKLNQQMI 140
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDS 118
++V+CG+ H +AL + G+ + +WG N +GQLGLG S+ P+ +++ +
Sbjct: 141 LQVSCGNWHCMALAADGQFF--------TWGQNRHGQLGLGKEFPSQASPQRVKSL-EGI 191
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
P A +V G H+ L+ L + +G GQLG P VK L
Sbjct: 192 PLA--QVAAGGAHSFALS--------LSGAVFGWGRNNAGQLGLSDETDRQSPCHVK-LL 240
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILISG 235
+ +V + CG HT+V++ +G V+++G L + D ++P + + G
Sbjct: 241 RTQKVVYISCGEEHTAVLTKSGGVFTFGAGS------FGQLGHDSMNDEVNPRRVLELMG 294
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 295 S--------EVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 342
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 46/241 (19%)
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
++ +VACG H + L+ GE Y + G+N GQLG +RE +I +Q
Sbjct: 36 SIKEVACGGNHSIFLLEDGEVY--------TCGSNTKGQLG-HEREGNKPEQIGALADQH 86
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVPEQVKE 176
+ V CG H+ L+ + + +++G G +GQLGH TT+ S +P +K+
Sbjct: 87 ----IVHVACGESHSLALSDQGQ--------LFSWGAGSDGQLGHTTTEDSVAIPRLIKK 134
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLG--LCPNASLTRNEAGDAISP 230
L Q + L V CG +H +++ G ++WG + GLG AS R ++ + I P
Sbjct: 135 LNQQMIL-QVSCGNWHCMALAADGQFFTWGQNRHGQLGLGKEFPSQASPQRVKSLEGI-P 192
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
+ QVA G AH+ ++ G ++ WGR +G LG D +P
Sbjct: 193 L---------------AQVAAGGAHSFALSLSG-AVFGWGRNNAGQLGLSDETDRQSPCH 236
Query: 291 V 291
V
Sbjct: 237 V 237
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 25/174 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFS-LVSSFTPSPVWDFHGHTVVKV 62
+ V AGG S A+ +GA++ WG +++ + G S +P V VV +
Sbjct: 193 LAQVAAGGAHSFALSLSGAVFGWGR----NNAGQLGLSDETDRQSPCHVKLLRTQKVVYI 248
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWA 121
+CG EH L +G + ++GA + GQLG + P+ ++E +
Sbjct: 249 SCGEEHTAVLTKSGGVF--------TFGAGSFGQLGHDSMNDEVNPRRVLELMGSE---- 296
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V ++ CG HT P+ + + FG G GQLG G T + P VK
Sbjct: 297 VTQIACGRQHTLAFV----PSS---GLIYAFGCGARGQLGTGHTCNVKCPSPVK 343
>gi|431911479|gb|ELK13685.1| Putative E3 ubiquitin-protein ligase HERC6 [Pteropus alecto]
Length = 1010
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 104/242 (42%), Gaps = 37/242 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF----TPSPVWDFHGHT 58
+I V G SLA+ G ++ WG +++G L F +P V G
Sbjct: 127 KIIQVSCGHYHSLALSEDGQVYSWG------KNSQGQLGLGKEFPSQASPQRVRSLEGIP 180
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES---RLRPKIIETFN 115
+ +VA G H AL +G + + WG+NN GQL L + R +P I
Sbjct: 181 LAQVAAGGAHSFALSLSGTS--------FGWGSNNTGQLALSGNNTPVQRYKPHSIGALK 232
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V ++CG HTA+LT + +TFG GQLG+ T P+QV+
Sbjct: 233 S---LDVIYISCGYEHTAVLTQNGK--------VFTFGDNSCGQLGYNPTAKKRGPQQVE 281
Query: 176 ELPQYVYLVSVDCGLFHT-SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILIS 234
+ V +DCG +HT + V + G+V S+G + P S + E D LIS
Sbjct: 282 GIDGLV--SQIDCGSYHTLAYVYTTGEVVSFGRGRNCASSPTHSEAQMENFDM--SCLIS 337
Query: 235 GN 236
N
Sbjct: 338 AN 339
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 121/278 (43%), Gaps = 50/278 (17%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTVVKV 62
V G SLA+ + G ++ WG + +EG + FTP + G +++V
Sbjct: 78 VSCGKEHSLAVCHKGRVFAWG------AGSEGQLGIEECKEKIFTPKKIKTLTGIKIIQV 131
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQDSPWA 121
+CG H +AL ED YSWG N+ GQLGLG S+ P+ + + + P A
Sbjct: 132 SCGHYHSLAL--------SEDGQVYSWGKNSQGQLGLGKEFPSQASPQRVRSL-EGIPLA 182
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQL---GHGTTQSALVPEQVKELP 178
+V G H+ L+ L + +G GQL G+ T P + L
Sbjct: 183 --QVAAGGAHSFALS--------LSGTSFGWGSNNTGQLALSGNNTPVQRYKPHSIGAL- 231
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGN 236
+ + ++ + CG HT+V++ G V+++G LG P A + + I ++
Sbjct: 232 KSLDVIYISCGYEHTAVLTQNGKVFTFGDNSCGQLGYNPTAKKRGPQQVEGIDGLV---- 287
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRS 274
Q+ CG+ HT+ ++ S+GRGR+
Sbjct: 288 ----------SQIDCGSYHTLAYVYTTGEVVSFGRGRN 315
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 28/164 (17%)
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
V + CG H+ LL + + + G GQLG P +K L + +
Sbjct: 23 VRQAACGERHSLLL--------LSDGTVHSCGDNTQGQLGRRGKPREERPGLIKAL-ETL 73
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGM--EKGLGL--CPNASLTRNEAGDAISPILISGNG 237
+ V CG H+ V G V++WG E LG+ C T + ++ I I
Sbjct: 74 LVGLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIEECKEKIFTPKKI-KTLTGIKI---- 128
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK 281
+QV+CG H++ +++DG +++SWG+ G LG GK
Sbjct: 129 ---------IQVSCGHYHSLALSEDG-QVYSWGKNSQGQLGLGK 162
>gi|410988349|ref|XP_004000448.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Felis
catus]
Length = 993
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 116/257 (45%), Gaps = 45/257 (17%)
Query: 26 WGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLV 85
WG L ST + V + P V ACG H + G+
Sbjct: 64 WGQLGLGSKSTVSKPTCVKALKP--------EKVKFAACGRNHTLVSTEGGK-------- 107
Query: 86 CYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 145
Y+ G NN GQLGLGD E R +I F S + +++ GS +A LT
Sbjct: 108 VYAAGGNNEGQLGLGDTEERNTFHLISFFT--SQHKIKQLSAGSNTSAALTE-------- 157
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSW 205
+ + +G GQ+G + VP+QV + + + +S CG +H++ V++ G+++++
Sbjct: 158 DGELFMWGDNSEGQIGLKDVTNVCVPQQVT-VGKPISWIS--CGYYHSAFVTTEGELYTF 214
Query: 206 GM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG 263
G E G LGL PN L + + I + VQVACG HTV++T+
Sbjct: 215 GEPESGKLGL-PNQLLCNHRMPQPVPGIP-----------EKVVQVACGGGHTVVLTEKA 262
Query: 264 YKLWSWGRGRSGVLGTG 280
++++G G+ G LG G
Sbjct: 263 --VYTFGLGQFGQLGLG 277
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 123/279 (44%), Gaps = 50/279 (17%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ S + G + + +N G L L D+ F L+S FT H + +++
Sbjct: 100 LVSTEGGKVYAAGGNNEGQLG------LGDTEERNTFHLISFFTSQ-------HKIKQLS 146
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS AL GE + WG N+ GQ+GL D + P+ + T + W
Sbjct: 147 AGSNTSAALTEDGE--------LFMWGDNSEGQIGLKDVTNVCVPQQV-TVGKPISW--- 194
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG--HGTTQSALVPEQVKELPQYV 181
++CG +H+A +T E +TFG E+G+LG + + +P+ V +P+ V
Sbjct: 195 -ISCGYYHSAFVT--------TEGELYTFGEPESGKLGLPNQLLCNHRMPQPVPGIPEKV 245
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
V V CG HT V++ V+++G+ + L L I +
Sbjct: 246 --VQVACGGGHTVVLTEKA-VYTFGLGQFGQLGLGTFLFETSVPKVIEHV---------- 292
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
K Q ++CG HT L+TD G ++++G GR G LG G
Sbjct: 293 KDQKISSISCGENHTALITDIGL-MYTFGDGRYGKLGLG 330
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 42/222 (18%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + AG S A+ G L+MWG+ +S + G V++ P G + +
Sbjct: 141 KIKQLSAGSNTSAALTEDGELFMWGD----NSEGQIGLKDVTNVC-VPQQVTVGKPISWI 195
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR---ESRLRPKIIETFNQDSP 119
+CG H + + GE Y++G +G+LGL ++ R+ P+ + P
Sbjct: 196 SCGYYHSAFVTTEGE--------LYTFGEPESGKLGLPNQLLCNHRM-PQPVPGI----P 242
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT----TQSALVPEQVK 175
V +V CG HT +LT E +TFGLG+ GQLG GT T V E VK
Sbjct: 243 EKVVQVACGGGHTVVLT---------EKAVYTFGLGQFGQLGLGTFLFETSVPKVIEHVK 293
Query: 176 ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK----GLGL 213
+ + S+ CG HT++++ G ++++G + GLGL
Sbjct: 294 DQ----KISSISCGENHTALITDIGLMYTFGDGRYGKLGLGL 331
>gi|350596671|ref|XP_003361480.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like, partial
[Sus scrofa]
Length = 2561
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 34/278 (12%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
S+A+ +G ++ WG+ D G + P + G VV+++CG +H +
Sbjct: 1705 SMALTESGEVFSWGD---GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVT 1761
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
S G+ + ++G + G+LGLG+ ++ P+ + + + +V CG HT
Sbjct: 1762 SDGKLF--------TFGNGDYGRLGLGNTSNKKLPERVTALEG---YQIGQVACGLNHTL 1810
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
++ SM W FG G+ G+LG G + + P++V L + + V CG +
Sbjct: 1811 AVSADG-------SMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCG-IGIKKVACGTQFS 1862
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++ G V+++G ++ +GL P RN P+L G +D VA GA
Sbjct: 1863 VALTKDGHVYTFGQDRLIGL-PEGR-ARNHNRPQQIPVLA------GVVIED---VAVGA 1911
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ + G +++WG G LG G T P +V
Sbjct: 1912 EHTLALASTG-DVYAWGSNSEGQLGLGHTNHVREPTLV 1948
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
I V G S+A+ G ++ +G LP+ + P + G +
Sbjct: 1852 IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR------NHNRPQQIPVLAGVVIE 1905
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
VA G+EH +AL S G+ Y +WG+N+ GQLGLG P ++ +
Sbjct: 1906 DVAVGAEHTLALASTGDVY--------AWGSNSEGQLGLGHTNHVREPTLVTVLQGKN-- 1955
Query: 121 AVYEVTCGSFHTALLTHRKRP 141
V +++ G H+A T P
Sbjct: 1956 -VRQISAGRCHSAAWTAPPVP 1975
>gi|413951295|gb|AFW83944.1| putative regulator of chromosome condensation (RCC1) family protein
[Zea mays]
Length = 1131
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 131/292 (44%), Gaps = 34/292 (11%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ +G L+ WG+ G + +S + P V G V ++CG
Sbjct: 406 VACGEYHTCAVTLSGDLYTWGDGTF-KFGLLGHGNDISHWVPKHVNGPLEGIHVSSISCG 464
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + SAG+ + ++G + G LG GDRES P+ +E+
Sbjct: 465 PWHTAVVTSAGQLF--------TFGDGSFGVLGHGDRESISVPREVESLKG---LRTVRA 513
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ G+LGHG LVP V L +
Sbjct: 514 ACGVWHTAAVVEVMAGNSSSSNCSSGKIFTWGDGDKGRLGHGDKGPKLVPTCVAALVEPN 573
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ V CG T ++++G V++ G + LG N D + P+ + G
Sbjct: 574 F-CQVACGHCLTVALTTSGHVYTMGSAVYGQLG---------NAQADGMLPVRVEGK--L 621
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F + +++CGA H ++T ++++WG+G +G LG G T D P +V
Sbjct: 622 HKNFVE--EISCGAYHVAVLTSK-TEVYTWGKGANGRLGHGDTDDKNTPTLV 670
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 104/246 (42%), Gaps = 43/246 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V ++CG H + GE Y SWG + G+LG G +PK+I+ S
Sbjct: 351 VQNISCGGRHAALVTKQGEIY--------SWGEESGGRLGHGVDCDVSQPKLIDAL---S 399
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG--ENGQLGHGTTQSALVPEQVKE 176
+ V CG +HT +T L +T+G G + G LGHG S VP+ V
Sbjct: 400 HMNIELVACGEYHTCAVT--------LSGDLYTWGDGTFKFGLLGHGNDISHWVPKHVNG 451
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ +++ S+ CG +HT+VV+SAG ++++G + G+ + + +
Sbjct: 452 PLEGIHVSSISCGPWHTAVVTSAGQLFTFG-DGSFGVLGHGDRESISVPREVESL----- 505
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGKTIDF 285
K V+ ACG HT V + K+++WG G G LG G
Sbjct: 506 -----KGLRTVRAACGVWHTAAVVEVMAGNSSSSNCSSGKIFTWGDGDKGRLGHGDKGPK 560
Query: 286 FAPAIV 291
P V
Sbjct: 561 LVPTCV 566
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 101/241 (41%), Gaps = 37/241 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
+ S+ G + + +AG L+ +G +G F ++ S P V G
Sbjct: 457 HVSSISCGPWHTAVVTSAGQLFTFG---------DGSFGVLGHGDRESISVPREVESLKG 507
Query: 57 HTVVKVACGSEHVVALVS--AGETYKGEDLV--CYSWGANNNGQLGLGDRESRLRPKIIE 112
V+ ACG H A+V AG + ++WG + G+LG GD+ +L P +
Sbjct: 508 LRTVRAACGVWHTAAVVEVMAGNSSSSNCSSGKIFTWGDGDKGRLGHGDKGPKLVPTCVA 567
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPE 172
+ + +V CG T LT +T G GQLG+ ++P
Sbjct: 568 ALVEPN---FCQVACGHCLTVALT--------TSGHVYTMGSAVYGQLGNAQAD-GMLPV 615
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPIL 232
+V+ ++ + CG +H +V++S +V++WG KG N L + D +P L
Sbjct: 616 RVEGKLHKNFVEEISCGAYHVAVLTSKTEVYTWG--KGA----NGRLGHGDTDDKNTPTL 669
Query: 233 I 233
+
Sbjct: 670 V 670
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 23/176 (13%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80
G ++ WG+ D G P+ V +VACG VAL ++G Y
Sbjct: 539 GKIFTWGD---GDKGRLGHGDKGPKLVPTCVAALVEPNFCQVACGHCLTVALTTSGHVY- 594
Query: 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKR 140
+ G+ GQLG + L ++ +++ V E++CG++H A+LT +
Sbjct: 595 -------TMGSAVYGQLGNAQADGMLPVRVEGKLHKN---FVEEISCGAYHVAVLTSK-- 642
Query: 141 PNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196
+ +T+G G NG+LGHG T P V+ L + V CG+ T+ +
Sbjct: 643 ------TEVYTWGKGANGRLGHGDTDDKNTPTLVEALKDKQVRIVV-CGINFTAAI 691
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 20/150 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW---DFHGHTV 59
C V G +++A+ +G ++ G S+ G + PV H + V
Sbjct: 573 NFCQVACGHCLTVALTTSGHVYTMG------SAVYGQLGNAQADGMLPVRVEGKLHKNFV 626
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+++CG+ HV L S E Y +WG NG+LG GD + + P ++E
Sbjct: 627 EEISCGAYHVAVLTSKTEVY--------TWGKGANGRLGHGDTDDKNTPTLVEALKDKQ- 677
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
V V CG TA + K + + +SMC
Sbjct: 678 --VRIVVCGINFTAAICIHKWVSGVDQSMC 705
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 19/130 (14%)
Query: 169 LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNASLTRNEAGD 226
LVP+ + E + + ++ CG H ++V+ G+++SWG E G LG + +++ + D
Sbjct: 338 LVPKPL-EFAVRLDVQNISCGGRHAALVTKQGEIYSWGEESGGRLGHGVDCDVSQPKLID 396
Query: 227 AISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGVLGTGKTID 284
A+S + I VACG HT VT G L++WG G + G+LG G I
Sbjct: 397 ALSHMNIE-------------LVACGEYHTCAVTLSG-DLYTWGDGTFKFGLLGHGNDIS 442
Query: 285 FFAPAIVLWP 294
+ P V P
Sbjct: 443 HWVPKHVNGP 452
>gi|15088545|gb|AAK84081.1|AF326781_2 putative chromosome condensation factor [Triticum monococcum]
Length = 907
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 121/290 (41%), Gaps = 44/290 (15%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSS------FTPSPVWDFHGHTVVKVACGSEHVVA 71
D+ G +++WG +S+ +++ S P P+ V V CG H
Sbjct: 32 DSLGDVYVWGEVVCDNSARTSSDTVIRSTGKTDFLLPKPLESNLVLDVYHVDCGVRHASL 91
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
+ GE + +WG ++ G+LG G RE + P+++E+ + + V CG FH
Sbjct: 92 VTRNGEVF--------TWGEDSGGRLGHGTREDSVHPRLVESL---AACNIDFVACGEFH 140
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF 191
T +T E W G G LGHGT +P ++ + + + V CG +
Sbjct: 141 TCAVT------TTGELYTWGDGTHNVGLLGHGTDVGHWIPRRISGPLEGLQIAYVSCGTW 194
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
HT++++S G ++++G + G+ + L + +SG + VAC
Sbjct: 195 HTALITSMGQLFTFG-DGSFGVLGHGDLKSISCPREVES--LSG--------LKTIAVAC 243
Query: 252 GAAHT-----VLVTDDGY-----KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G HT V+VT KL++WG G LG G P V
Sbjct: 244 GVWHTAAIVEVIVTQSSATVSAGKLFTWGDGDKHRLGHGDKEARLKPTCV 293
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 125/289 (43%), Gaps = 30/289 (10%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ G L+ WG+ + G + V + P + G + V+CG
Sbjct: 134 VACGEFHTCAVTTTGELYTWGD-GTHNVGLLGHGTDVGHWIPRRISGPLEGLQIAYVSCG 192
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
+ H + S G+ +++G + G LG GD +S P+ +E+ S V
Sbjct: 193 TWHTALITSMGQ--------LFTFGDGSFGVLGHGDLKSISCPREVESL---SGLKTIAV 241
Query: 126 TCGSFHTALLTH---RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
CG +HTA + + + +T+G G+ +LGHG ++ L P V L Y +
Sbjct: 242 ACGVWHTAAIVEVIVTQSSATVSAGKLFTWGDGDKHRLGHGDKEARLKPTCVASLIDYDF 301
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
V CG T ++++G VW+ G G N N G P L+
Sbjct: 302 Y-RVACGHSLTVGLTTSGKVWTMG-NSVYGQLGNL----NSDG---RPCLVEDK----IA 348
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
+ +Q+ACG+ H ++T ++++WG+G +G LG G D P V
Sbjct: 349 SEHVLQIACGSYHVAVLTSRS-EVFTWGKGANGRLGHGDIEDRKVPTTV 396
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 106/262 (40%), Gaps = 34/262 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G + I + G L+ +G+ G L S P V G + V
Sbjct: 185 QIAYVSCGTWHTALITSMGQLFTFGDGSF---GVLGHGDLKSISCPREVESLSGLKTIAV 241
Query: 63 ACGSEHVVALVSAGETYKGEDLVC---YSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
ACG H A+V T + ++WG + +LG GD+E+RL+P + +
Sbjct: 242 ACGVWHTAAIVEVIVTQSSATVSAGKLFTWGDGDKHRLGHGDKEARLKPTCVASLID--- 298
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ Y V CG T LT WT G GQLG+ S P V++
Sbjct: 299 YDFYRVACGHSLTVGLT--------TSGKVWTMGNSVYGQLGN--LNSDGRPCLVEDKIA 348
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ + CG +H +V++S +V++WG KG N L + D P +
Sbjct: 349 SEHVLQIACGSYHVAVLTSRSEVFTWG--KG----ANGRLGHGDIEDRKVPTTVEA---- 398
Query: 240 GPKFQDPV--QVACGAAHTVLV 259
+D +ACGA T +
Sbjct: 399 ---LRDRAVRHIACGANFTAAI 417
>gi|409911788|ref|YP_006890253.1| lipoprotein [Geobacter sulfurreducens KN400]
gi|298505363|gb|ADI84086.1| ATS1 domain repeat protein [Geobacter sulfurreducens KN400]
Length = 2082
Score = 80.1 bits (196), Expect = 2e-12, Method: Composition-based stats.
Identities = 82/293 (27%), Positives = 118/293 (40%), Gaps = 30/293 (10%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
V+ GG SL + + G LW WG S G + S P PV G+ A G+
Sbjct: 403 VEPGGAFSLGLRSNGTLWAWGGNA---SGQLGDGTTTPSAIPVPVVGDAGNWRT-TATGT 458
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP---WAVY 123
H VA+ + G ++WG N++GQLG+G + P+ I N S WA
Sbjct: 459 AHSVAVRADG--------TLWAWGDNSSGQLGIGSTVAASTPQQITVTNPASAGNDWAA- 509
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT-TQSALVPEQVKELPQYVY 182
V G HT L + W +G GQLG GT T + P Q+ +
Sbjct: 510 -VAAGEAHTIGLK--------ADGTLWAWGDNTFGQLGDGTGTSNRTTPVQIVTGNPGNF 560
Query: 183 ---LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
V+V G + + + G +W+WG L L + ++ + L + P
Sbjct: 561 DRNWVAVAAGGVFSLALQADGTIWTWGDNSLLQLGTDPAVLAPATQRNVPAQLAVASPPS 620
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
V +A G H + + DG LW+WG G LG G T F P V+
Sbjct: 621 TAFNSSWVAIAAGQDHGLALQADG-TLWAWGANSVGQLGNGVTTATFTPVQVI 672
Score = 67.0 bits (162), Expect = 2e-08, Method: Composition-based stats.
Identities = 89/359 (24%), Positives = 130/359 (36%), Gaps = 84/359 (23%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF-SLVSSFTPSPVWDFH----GHTVV 60
+ G S+A+ G LW WG+ +SS + G S V++ TP + + G+
Sbjct: 453 TTATGTAHSVAVRADGTLWAWGD----NSSGQLGIGSTVAASTPQQITVTNPASAGNDWA 508
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES-RLRPKIIETFNQ--- 116
VA G H + L + G ++WG N GQLG G S R P I T N
Sbjct: 509 AVAAGEAHTIGLKADG--------TLWAWGDNTFGQLGDGTGTSNRTTPVQIVTGNPGNF 560
Query: 117 DSPWAVYEVTCGSFHTAL--------------------------LTHRKRPNDML----- 145
D W V G F AL T R P +
Sbjct: 561 DRNW-VAVAAGGVFSLALQADGTIWTWGDNSLLQLGTDPAVLAPATQRNVPAQLAVASPP 619
Query: 146 -----------------------ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+ W +G GQLG+G T + P QV Y
Sbjct: 620 STAFNSSWVAIAAGQDHGLALQADGTLWAWGANSVGQLGNGVTTATFTPVQVINAEGVPY 679
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNGP 238
VS+ G H+ S G +W+WG + G G P + N + +++ N
Sbjct: 680 -VSLAAGTSHSLAGRSDGTLWAWGNNTSGQLGTGPHPGDADPLNPQPHTVPARILTSNPV 738
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
D + G +H+ + +G LW+WG+ SG LG G T + P +L P ++
Sbjct: 739 SAA--DDWLVATAGGSHSAALKSNG-TLWTWGQNTSGQLGNGTTTEADIPTALLEPRIS 794
Score = 52.4 bits (124), Expect = 4e-04, Method: Composition-based stats.
Identities = 79/302 (26%), Positives = 123/302 (40%), Gaps = 55/302 (18%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+V AG SL I G+LW WG+ L G + + F+P +++
Sbjct: 84 TVAAGTTHSLGIKADGSLWAWGSNLFGQLGQPLVNGQLA-TNKFSP-----------IRI 131
Query: 63 ACGSEHVVALVSAGET----YKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
G++ V VSAGE KG D +SWG N G+LG G SR +P + + S
Sbjct: 132 GTGNDWVA--VSAGELTSFGLKG-DGTLWSWGNNLFGELGDGTTVSRPQPVQV-VADPLS 187
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK-EL 177
V G H L + W + G N GT + ++P ++
Sbjct: 188 NGRYVAVAAGGEHALAL--------QADGTLWAW--GANLTGQLGTGGTGILPNPTPLKI 237
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLC-PNASLTRNEAGDAISPIL 232
++ G H+ + + G +WSWG E G G+ P A++T +P
Sbjct: 238 GTDRDWTAISAGEMHSVALKADGSLWSWGQNLFGELGNGVALPGANVT--------TPTR 289
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ G G D V +A GA HTV + +G + +WG G +G G + P +++
Sbjct: 290 V-GTG------SDWVAIAAGALHTVALHRNG-TVSAWGNNAQGAVGDGTVANRSTPTLIV 341
Query: 293 WP 294
P
Sbjct: 342 AP 343
Score = 51.2 bits (121), Expect = 0.001, Method: Composition-based stats.
Identities = 72/293 (24%), Positives = 112/293 (38%), Gaps = 45/293 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW----DFHGHTVVK 61
+V AG + S + G LW WGN + G + VS P PV V
Sbjct: 139 AVSAGELTSFGLKGDGTLWSWGNNLFGEL---GDGTTVSR--PQPVQVVADPLSNGRYVA 193
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
VA G EH +AL + G ++WGAN GQLG G P ++ D W
Sbjct: 194 VAAGGEHALALQADG--------TLWAWGANLTGQLGTGGTGILPNPTPLK-IGTDRDWT 244
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT---QSALVPEQVKELP 178
++ G H+ L + W++G G+LG+G + P +V
Sbjct: 245 A--ISAGEMHSVALK--------ADGSLWSWGQNLFGELGNGVALPGANVTTPTRVGTGS 294
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+ V++ G HT + G V +WG + R+ ++P+ + N
Sbjct: 295 DW---VAIAAGALHTVALHRNGTVSAWGNNAQGAVGDGTVANRSTPTLIVAPVTLVNN-- 349
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V +A G + V +G ++ WG +G LG G AP ++
Sbjct: 350 --------VAIAAGTGVSFSVLANG-TVFGWGGNGAGQLGNGTFGAVTAPTVL 393
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 63/148 (42%), Gaps = 14/148 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209
W G + GQLG GT + P QV + +V G H+ + + G +W+WG
Sbjct: 54 WAAGSNQFGQLGDGTGINRTSPVQVPGTWK-----TVAAGTTHSLGIKADGSLWAWG-SN 107
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSW 269
G + A + SPI I G G D V V+ G + + DG LWSW
Sbjct: 108 LFGQLGQPLVNGQLATNKFSPIRI-GTG------NDWVAVSAGELTSFGLKGDG-TLWSW 159
Query: 270 GRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
G G LG G T+ P V+ PL+
Sbjct: 160 GNNLFGELGDGTTVSRPQPVQVVADPLS 187
>gi|348583549|ref|XP_003477535.1| PREDICTED: RCC1 and BTB domain-containing protein 1-like [Cavia
porcellus]
Length = 531
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 22/211 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED V Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGIAP--IQVCTNLLIKQVVEVACGSHHSMALA----- 144
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ + +G GQ+G G+T + P +V +V + CG + V +G+
Sbjct: 145 ---ADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHVKRVVGIACGQTSSMAVLDSGE 201
Query: 202 VWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
V+ WG N L G+ ++P+ ++ H Q+ CG AHT+ +TD
Sbjct: 202 VYGWGYNG------NGQLGLGNNGNQLTPMRVA--ALHRVCVN---QIVCGYAHTLALTD 250
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+G L++WG G LGTG + P ++
Sbjct: 251 EGL-LYAWGANTYGQLGTGNKNNLLNPEHIM 280
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 98/217 (45%), Gaps = 35/217 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG--NCPLPDSSTEGGFSLVSSFTPSPVWD-FHGH 57
+ Q+ V G S+A+ G ++ WG NC G S + TP V + H
Sbjct: 127 IKQVVEVACGSHHSMALAADGEVFAWGYNNC-----GQVGSGSTANQPTPRKVTNCLHVK 181
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
VV +ACG +A++ +GE Y WG N NGQLGLG+ ++L P + ++
Sbjct: 182 RVVGIACGQTSSMAVLDSGEVY--------GWGYNGNGQLGLGNNGNQLTPMRVAALHR- 232
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V ++ CG HT LT E + + +G GQLG G + L PE +
Sbjct: 233 --VCVNQIVCGYAHTLALTD--------EGLLYAWGANTYGQLGTGNKNNLLNPEHIMVE 282
Query: 178 PQYVYLVSVDCGLFHTSVVSSA----GDVWSWGMEKG 210
+ V V+ H++ +S+A G V+ WG +G
Sbjct: 283 KERV----VEIAACHSTHISAAKTQGGHVYMWGQCRG 315
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSNCLGTGDNQSTLVPKKLEALCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268
+ L I+PI + N + V+VACG+ H++ + DG ++++
Sbjct: 103 G------YSQLGNGTTNQGIAPIQVCTN----LLIKQVVEVACGSHHSMALAADG-EVFA 151
Query: 269 WGRGRSGVLGTGKTIDFFAPAIV 291
WG G +G+G T + P V
Sbjct: 152 WGYNNCGQVGSGSTANQPTPRKV 174
>gi|350407907|ref|XP_003488238.1| PREDICTED: RCC1 and BTB domain-containing protein 1-like [Bombus
impatiens]
Length = 539
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 101/208 (48%), Gaps = 28/208 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVW---DFHGHTVV 60
+ + GG SLA+ N G ++ WG+ S G +++S+ P P +G VV
Sbjct: 135 VVDIACGGHHSLALTNKGEIYAWGH---NVSGQVGCGTILSTVQPIPKLLNVGLNGKKVV 191
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
++CG VA+ +GE Y SWG N GQLGLG+ S++ P+ + TF +
Sbjct: 192 HISCGDSSSVAVTDSGEVY--------SWGHNGVGQLGLGNCTSQVEPQKVATF---AKI 240
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ +V CG HT L+ E + + +G GQLG T + +P ++ E+P+
Sbjct: 241 VIEKVVCGYMHTLALSD--------EGVLYVWGANSYGQLGLNTDSNVWIPTKL-EVPEM 291
Query: 181 VYLVSVDCGLF-HTSVVSSAGD-VWSWG 206
++ + + H S+ S G+ ++ WG
Sbjct: 292 GRILDIVTSHYHHISLAMSEGNRIFMWG 319
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 111/265 (41%), Gaps = 51/265 (19%)
Query: 44 SSFTPSPVWDFHGHTVVKVACGS-EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR 102
S+ P + G +V A G HV+AL G+ Y SWG N+ +LG
Sbjct: 66 STIYPKKIEALCGKSVKTFAYGKGPHVLALTEEGKVY--------SWGYNDYCELGNKST 117
Query: 103 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162
L P ++ + D V ++ CG H+ LT++ + +G +GQ+G
Sbjct: 118 NEGLTPTLVPSVLDDK--FVVDIACGGHHSLALTNKGE--------IYAWGHNVSGQVGC 167
Query: 163 GTTQSALVPEQVKELPQYV-------YLVSVDCGLFHTSVVSSAGDVWSWGM----EKGL 211
GT S + P +P+ + +V + CG + V+ +G+V+SWG + GL
Sbjct: 168 GTILSTVQP-----IPKLLNVGLNGKKVVHISCGDSSSVAVTDSGEVYSWGHNGVGQLGL 222
Query: 212 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
G C S + + I+I +V CG HT+ ++D+G L+ WG
Sbjct: 223 GNC--TSQVEPQKVATFAKIVIE-------------KVVCGYMHTLALSDEGV-LYVWGA 266
Query: 272 GRSGVLGTGKTIDFFAPAIVLWPPL 296
G LG + + P + P +
Sbjct: 267 NSYGQLGLNTDSNVWIPTKLEVPEM 291
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 102/244 (41%), Gaps = 41/244 (16%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
+D + Y G N G LG GD +S + PK IE CG + K P
Sbjct: 44 KDDMVYGIGNNTYGCLGTGDTQSTIYPKKIEAL------------CGK-SVKTFAYGKGP 90
Query: 142 NDML---ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSS 198
+ + E +++G + +LG+ +T L P V + ++V + CG H+ +++
Sbjct: 91 HVLALTEEGKVYSWGYNDYCELGNKSTNEGLTPTLVPSVLDDKFVVDIACGGHHSLALTN 150
Query: 199 AGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKF-------QDPVQVAC 251
G++++WG N +G ++S P PK + V ++C
Sbjct: 151 KGEIYAWG--------------HNVSGQVGCGTILSTVQP-IPKLLNVGLNGKKVVHISC 195
Query: 252 GAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV--LWPPLTEEFKQDELNTGG 309
G + +V VTD G +++SWG G LG G P V + E+ ++T
Sbjct: 196 GDSSSVAVTDSG-EVYSWGHNGVGQLGLGNCTSQVEPQKVATFAKIVIEKVVCGYMHTLA 254
Query: 310 LDDE 313
L DE
Sbjct: 255 LSDE 258
>gi|146185478|ref|XP_001031903.2| Kinesin motor domain containing protein [Tetrahymena thermophila]
gi|146143053|gb|EAR84240.2| Kinesin motor domain containing protein [Tetrahymena thermophila
SB210]
Length = 1349
Score = 80.1 bits (196), Expect = 2e-12, Method: Composition-based stats.
Identities = 54/202 (26%), Positives = 105/202 (51%), Gaps = 33/202 (16%)
Query: 84 LVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPN- 142
++ ++WG+ +G+LGLG P ++ +S +Y ++CG +HTA +T + N
Sbjct: 912 IITFAWGSGKDGRLGLGTDRGESNPTML-----NSQQFIY-LSCGYYHTAGITEKGIYNQ 965
Query: 143 -----DMLESM--------CWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCG 189
D ++++ + +G G +GQLG+ + S+ VP + +PQ + +V V CG
Sbjct: 966 YYLQTDKVKNILYFIQTGELYLWGKGNSGQLGNSSFNSSKVP-ILANIPQTIPIVQVVCG 1024
Query: 190 LFHTSVVSSAGDVWSWGM-EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ 248
H+ +SS+G V+SWG+ E+G L N+ +P +I + +
Sbjct: 1025 WQHSMALSSSGQVYSWGLGEEG-------QLGHNDMETLNTPKMIEYFSQQAKQIK---Y 1074
Query: 249 VACGAAHTVLVTDDGYKLWSWG 270
++CG +H+ ++++G L++WG
Sbjct: 1075 ISCGHSHSAAISEEG-DLYTWG 1095
Score = 68.6 bits (166), Expect = 6e-09, Method: Composition-based stats.
Identities = 63/217 (29%), Positives = 99/217 (45%), Gaps = 30/217 (13%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80
G L++WG +S G S SS P +V+V CG +H +AL S+G+ Y
Sbjct: 983 GELYLWGK---GNSGQLGNSSFNSSKVPILANIPQTIPIVQVVCGWQHSMALSSSGQVY- 1038
Query: 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKR 140
SWG GQLG D E+ PK+IE F+Q + Y ++CG H+A ++
Sbjct: 1039 -------SWGLGEEGQLGHNDMETLNTPKMIEYFSQQAKQIKY-ISCGHSHSAAISEE-- 1088
Query: 141 PNDMLESMC---WTFGLGEN-GQLGHGTTQSALVPE----QVKELPQYVYLVSVDCGLFH 192
D+ C + + EN Q TQ + E +++ Q + V G+ H
Sbjct: 1089 -GDLYTWGCNYDYRLMINENKNQYKPVLTQLHYLKEIYQKSGQDISQKFNVQLVSLGVNH 1147
Query: 193 TSVVSSAGDVWSWGM----EKGLGL---CPNASLTRN 222
T+V++ G V++ G+ E G+ L PN + R+
Sbjct: 1148 TAVITVDGSVYTAGLGNHGELGIILNESVPNTDIIRD 1184
Score = 43.1 bits (100), Expect = 0.30, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD--RES 104
TP +++F V ++A G H+ + GE Y+WG N +L +GD ES
Sbjct: 1264 TPQIMYEFGNIRVQQIAAGKNHIAIITENGEL--------YTWGKNFYDKLDMGDDKHES 1315
Query: 105 RLRPKIIETFNQDSPWAVYEVTCGSFHTALL 135
K+ E N +V+CG FH+ L
Sbjct: 1316 NKPVKLFEGINN---LQCIQVSCGEFHSVCL 1343
>gi|145594132|ref|YP_001158429.1| regulator of chromosome condensation, RCC1 [Salinispora tropica
CNB-440]
gi|145303469|gb|ABP54051.1| regulator of chromosome condensation, RCC1 [Salinispora tropica
CNB-440]
Length = 570
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 122/290 (42%), Gaps = 35/290 (12%)
Query: 5 CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
+V AG SLA+ +AG + WG DS G + VSS TP V G TV VA
Sbjct: 93 TAVVAGDFHSLALTSAGTVLAWGRN---DSGQLGDGTTVSSSTPVVVRLPVGVTVTAVAA 149
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G H +AL S G V +WG+N+ GQLG G S P + + V
Sbjct: 150 GFGHSLALTSTG--------VVLAWGSNSFGQLGDGTTVSSSTPVAVRLPVGVT---VTA 198
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
V GS H+ LT + ++ W G +GQLG GTT S+ P V+ LP +
Sbjct: 199 VAAGSGHSLALT------SVGAALAW--GNNFSGQLGDGTTVSSSTPVAVR-LPVGTTVT 249
Query: 185 SVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQ 244
+V G H+ ++SAG +WG + GD + + P
Sbjct: 250 AVAGGSHHSLALTSAGAALAWGGNF-----------SGQLGDGTTVSSSTPVVVSLPVGT 298
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
+A G AH+V +T G L +WG G LG G D P V P
Sbjct: 299 TVTALAGGDAHSVALTSAGAAL-AWGSNGDGQLGDGTNADSSVPIAVSLP 347
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 107/262 (40%), Gaps = 41/262 (15%)
Query: 22 ALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGET 78
A WG+ L D +T G S TP PV G V G H +AL SAG
Sbjct: 58 AFLAWGDNAFGQLGDGTTTG------SNTPLPVSLPAGTDATAVVAGDFHSLALTSAGT- 110
Query: 79 YKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
+WG N++GQLG G S P ++ + V V G H+ LT
Sbjct: 111 -------VLAWGRNDSGQLGDGTTVSSSTPVVVRLPVGVT---VTAVAAGFGHSLALTST 160
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSS 198
+ +G GQLG GTT S+ P V+ LP V + +V G H+ ++S
Sbjct: 161 G--------VVLAWGSNSFGQLGDGTTVSSSTPVAVR-LPVGVTVTAVAAGSGHSLALTS 211
Query: 199 AGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVL 258
G +WG L +++ + +P+ + P VA G+ H++
Sbjct: 212 VGAALAWGNNFSGQLGDGTTVSSS------TPVAV-----RLPVGTTVTAVAGGSHHSLA 260
Query: 259 VTDDGYKLWSWGRGRSGVLGTG 280
+T G L +WG SG LG G
Sbjct: 261 LTSAGAAL-AWGGNFSGQLGDG 281
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 83/203 (40%), Gaps = 22/203 (10%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ +V AG SLA+ + GA WGN S G + VSS TP V G TV VA
Sbjct: 196 VTAVAAGSGHSLALTSVGAALAWGNN---FSGQLGDGTTVSSSTPVAVRLPVGTTVTAVA 252
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS H +AL SAG +WG N +GQLG G S P ++ + V
Sbjct: 253 GGSHHSLALTSAGA--------ALAWGGNFSGQLGDGTTVSSSTPVVVSLPVGTT---VT 301
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
+ G H+ LT ++ W G +GQLG GT + VP V
Sbjct: 302 ALAGGDAHSVALTSAG------AALAW--GSNGDGQLGDGTNADSSVPIAVSLPAGATIT 353
Query: 184 VSVDCGLFHTSVVSSAGDVWSWG 206
H ++S G +WG
Sbjct: 354 AIAAHDGAHNLAITSTGAALAWG 376
>gi|198421625|ref|XP_002120080.1| PREDICTED: similar to mCG130390, partial [Ciona intestinalis]
Length = 1609
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 113/266 (42%), Gaps = 63/266 (23%)
Query: 68 HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC 127
H +AL GE + SWG + G+LG G+ + + RP+ IE V +V C
Sbjct: 846 HAIALTENGEVF--------SWGDGDYGKLGHGNSDRQRRPRQIEALRGQE---VVQVAC 894
Query: 128 GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVD 187
G H+A++T ++ +TFG G+ G+LGHG+T + +PE+V L Y+ + V
Sbjct: 895 GFKHSAVVT--------IDGKLFTFGYGDYGRLGHGSTTNKKIPERVMALENYI-IGQVA 945
Query: 188 CGLFHTSVVSSAG-DVWSWGM----EKGLG------------LCPNASLTRNEAGDAISP 230
CGL HT +VS VW+ G + G+G + + + G +
Sbjct: 946 CGLNHTVIVSQDNLTVWACGDGDYGKLGIGGTSAKTSPTKIEVLSRVGIKKISCGAQFTA 1005
Query: 231 IL-------------ISGN--GPHGPKFQDPV----------QVACGAAHTVLVTDDGYK 265
L + GN P F V ++ GA HT+ +T G
Sbjct: 1006 ALTWDGKLFMFGQDRMCGNCETRTSPSFNPQVVTALSSHHIIDISVGAEHTIALTSKGI- 1064
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIV 291
+++WG G LG G T P +V
Sbjct: 1065 VYTWGSNTDGQLGLGHTNHVQEPTLV 1090
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 94/228 (41%), Gaps = 32/228 (14%)
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQ 116
H KV CG + + G V S G + G+LG G+ + R I
Sbjct: 780 HEARKVVCGQNCTFIINNNG--------VVLSCGEGSYGRLGQGNSDDSNRLTHISALQG 831
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKE 176
+ T H LT +++G G+ G+LGHG + P Q++
Sbjct: 832 FIVKQLATSTGSDGHAIALTENGE--------VFSWGDGDYGKLGHGNSDRQRRPRQIEA 883
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPI--LIS 234
L + +V V CG H++VV+ G ++++G G + S T + + + + I
Sbjct: 884 L-RGQEVVQVACGFKHSAVVTIDGKLFTFGY-GDYGRLGHGSTTNKKIPERVMALENYII 941
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
G QVACG HTV+V+ D +W+ G G G LG G T
Sbjct: 942 G------------QVACGLNHTVIVSQDNLTVWACGDGDYGKLGIGGT 977
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 26/136 (19%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWG------NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
I + G + A+ G L+M+G NC S SF P V H
Sbjct: 994 IKKISCGAQFTAALTWDGKLFMFGQDRMCGNCETRTSP---------SFNPQVVTALSSH 1044
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
++ ++ G+EH +AL S G + Y+WG+N +GQLGLG P ++E+ +
Sbjct: 1045 HIIDISVGAEHTIALTSKG--------IVYTWGSNTDGQLGLGHTNHVQEPTLVESLSGK 1096
Query: 118 SPWAVYEVTCGSFHTA 133
+ + +++ G H+A
Sbjct: 1097 N---IRQISAGRTHSA 1109
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 89/206 (43%), Gaps = 26/206 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G S + G L+ +G D G S + P V + + +V
Sbjct: 888 EVVQVACGFKHSAVVTIDGKLFTFG---YGDYGRLGHGSTTNKKIPERVMALENYIIGQV 944
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
ACG H V + ++L ++ G + G+LG+G ++ P IE S +
Sbjct: 945 ACGLNHTVIV-------SQDNLTVWACGDGDYGKLGIGGTSAKTSPTKIEVL---SRVGI 994
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA--LVPEQVKELPQY 180
+++CG+ TA LT + F G++ G+ T+++ P+ V L +
Sbjct: 995 KKISCGAQFTAALTWDGK----------LFMFGQDRMCGNCETRTSPSFNPQVVTALSSH 1044
Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWG 206
+++ + G HT ++S G V++WG
Sbjct: 1045 -HIIDISVGAEHTIALTSKGIVYTWG 1069
>gi|196012194|ref|XP_002115960.1| hypothetical protein TRIADDRAFT_59918 [Trichoplax adhaerens]
gi|190581736|gb|EDV21812.1| hypothetical protein TRIADDRAFT_59918 [Trichoplax adhaerens]
Length = 897
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 88/190 (46%), Gaps = 25/190 (13%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ V G SLA+ N G ++ WG+ + S VSS P + G +V++A
Sbjct: 142 VVQVACGQSHSLAVINDGTVFSWGSNRYGQLGID---SNVSSVEPKQILKLSGFYIVQIA 198
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF-NQDSPWAV 122
G H +A+ ++G +WG N+ GQLGLG + L P + + +Q +A
Sbjct: 199 AGGAHSLAITNSG--------ALLTWGKNSFGQLGLGTNDGVLSPTCVSSLRSQHIAYAA 250
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
CG HTA+LT E +TFG G +GQLGH + P+ V +L V
Sbjct: 251 ----CGEDHTAVLTK--------EGGVFTFGAGSSGQLGHNSLSHHCSPQMVVDLMGIV- 297
Query: 183 LVSVDCGLFH 192
+ + CG F+
Sbjct: 298 VTQITCGRFY 307
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 25/208 (12%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLE 146
Y+WG N++GQLG+ D+ + + S +AV +V CG H+ + + +
Sbjct: 107 YAWGDNSDGQLGVTDQNLKQFYRTPRQIKSLSKFAVVQVACGQSHSLAVIN--------D 158
Query: 147 SMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+++G GQLG + S++ P+Q+ +L + Y+V + G H+ ++++G + +WG
Sbjct: 159 GTVFSWGSNRYGQLGIDSNVSSVEPKQILKLSGF-YIVQIAAGGAHSLAITNSGALLTWG 217
Query: 207 MEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
LGL N + +SP +S + Q ACG HT ++T +G
Sbjct: 218 KNSFGQLGLGTNDGV--------LSPTCVS-----SLRSQHIAYAACGEDHTAVLTKEG- 263
Query: 265 KLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
++++G G SG LG +P +V+
Sbjct: 264 GVFTFGAGSSGQLGHNSLSHHCSPQMVV 291
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 104/241 (43%), Gaps = 40/241 (16%)
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
HT+ ++CG H + L+ G+ YS G+N+ GQ G R + + F
Sbjct: 33 NHTIKLISCGLNHTILLLQDGQI--------YSCGSNDYGQTG--------RQRNNKRFA 76
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG---HGTTQSALVPE 172
+ + +T S + A H ND ++ + +G +GQLG Q P
Sbjct: 77 RIDAFESMRITNVSSNGA--NHNLAIND--KNCIYAWGDNSDGQLGVTDQNLKQFYRTPR 132
Query: 173 QVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISP 230
Q+K L ++ +V V CG H+ V + G V+SWG + LG+ N S + +S
Sbjct: 133 QIKSLSKFA-VVQVACGQSHSLAVINDGTVFSWGSNRYGQLGIDSNVSSVEPKQILKLSG 191
Query: 231 ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAI 290
I VQ+A G AH++ +T+ G L +WG+ G LG G +P
Sbjct: 192 FYI-------------VQIAAGGAHSLAITNSG-ALLTWGKNSFGQLGLGTNDGVLSPTC 237
Query: 291 V 291
V
Sbjct: 238 V 238
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 90/202 (44%), Gaps = 30/202 (14%)
Query: 10 GGMMSLAIDNAGALWMWGNCP-----LPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVAC 64
G +LAI++ ++ WG+ + D + + + TP + VV+VAC
Sbjct: 93 GANHNLAINDKNCIYAWGDNSDGQLGVTDQNLKQFYR-----TPRQIKSLSKFAVVQVAC 147
Query: 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYE 124
G H +A+++ G +SWG+N GQLG+ S + PK I S + + +
Sbjct: 148 GQSHSLAVINDG--------TVFSWGSNRYGQLGIDSNVSSVEPKQILKL---SGFYIVQ 196
Query: 125 VTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLV 184
+ G H+ +T+ T+G GQLG GT L P V L ++
Sbjct: 197 IAAGGAHSLAITN--------SGALLTWGKNSFGQLGLGTNDGVLSPTCVSSLRSQ-HIA 247
Query: 185 SVDCGLFHTSVVSSAGDVWSWG 206
CG HT+V++ G V+++G
Sbjct: 248 YAACGEDHTAVLTKEGGVFTFG 269
>gi|326918486|ref|XP_003205519.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like
[Meleagris gallopavo]
Length = 1050
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 137/297 (46%), Gaps = 48/297 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS----SFTPSPVWDFHGHT 58
I V G S+A+ + G ++ WG + ++G L + P + + T
Sbjct: 85 HIVHVACGESHSVALSDQGQVFSWG------AGSDGQLGLTTIEDAVTVPRLIKKLNQQT 138
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
+++++CG+ H +AL + G+ + +WG N+ GQLGLG S+ P+ +++ +
Sbjct: 139 ILQISCGNWHCLALAADGQFF--------TWGQNSYGQLGLGKECPSQASPQRVKSLD-G 189
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
P A +V G H+ L+ L + +G +GQLG + P VK L
Sbjct: 190 IPLA--QVAAGGAHSFALS--------LSGAVFGWGKNSSGQLGLSDERDRESPCHVKLL 239
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISP---ILIS 234
+ +V + CG HT+V++ +G V+++G G C L + D ++P + +
Sbjct: 240 -RSQKVVYISCGEEHTAVLTKSGGVFTFGA----GSC--GQLGHDSMNDEVNPRRVLELM 292
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G+ + Q+ACG HT+ ++++G G G LGTG T + P+ V
Sbjct: 293 GS--------EVSQIACGRHHTLAFVPSSGMIYAFGCGTRGQLGTGHTCNVKCPSPV 341
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 118/253 (46%), Gaps = 48/253 (18%)
Query: 48 PSP-VWDF-HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
P P V+ F H V +VACG H V L+ GE Y + G N GQLG S+
Sbjct: 23 PEPQVYGFIHDRNVKEVACGGNHSVFLLEDGEVY--------TCGLNTKGQLGHESEGSK 74
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 165
P++I + + V CG H+ L+ + + +++G G +GQLG T
Sbjct: 75 --PELIGAL---AGQHIVHVACGESHSVALSDQGQ--------VFSWGAGSDGQLGLTTI 121
Query: 166 QSAL-VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGL-CPN-AS 218
+ A+ VP +K+L Q ++ + CG +H +++ G ++WG + GLG CP+ AS
Sbjct: 122 EDAVTVPRLIKKLNQQT-ILQISCGNWHCLALAADGQFFTWGQNSYGQLGLGKECPSQAS 180
Query: 219 LTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
R ++ D I P+ QVA G AH+ ++ G ++ WG+ SG LG
Sbjct: 181 PQRVKSLDGI-PL---------------AQVAAGGAHSFALSLSG-AVFGWGKNSSGQLG 223
Query: 279 TGKTIDFFAPAIV 291
D +P V
Sbjct: 224 LSDERDRESPCHV 236
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 25/174 (14%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFS-LVSSFTPSPVWDFHGHTVVKV 62
+ V AGG S A+ +GA++ WG +SS + G S +P V VV +
Sbjct: 192 LAQVAAGGAHSFALSLSGAVFGWGK----NSSGQLGLSDERDRESPCHVKLLRSQKVVYI 247
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPK-IIETFNQDSPWA 121
+CG EH L +G + ++GA + GQLG + P+ ++E +
Sbjct: 248 SCGEEHTAVLTKSGGVF--------TFGAGSCGQLGHDSMNDEVNPRRVLELMGSE---- 295
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V ++ CG HT P+ M + FG G GQLG G T + P VK
Sbjct: 296 VSQIACGRHHTLAFV----PSS---GMIYAFGCGTRGQLGTGHTCNVKCPSPVK 342
>gi|403263569|ref|XP_003924096.1| PREDICTED: uncharacterized protein LOC101049856 [Saimiri
boliviensis boliviensis]
Length = 1170
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 122/277 (44%), Gaps = 50/277 (18%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ S + G + + ++ G L L D+ F L+S FTP H + +++
Sbjct: 100 LVSTEGGNVYATGGNDEGQLG------LGDTEERTTFHLISFFTPQ-------HKIKQLS 146
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
GS AL ED + WG N+ GQ+GL D + P + T S W
Sbjct: 147 AGSNTSAALT--------EDGRLFMWGDNSEGQIGLPDMPNACVPHQVTTGKPVS-W--- 194
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG--HGTTQSALVPEQVKELPQYV 181
++CG +H+A +T + + FG ENG+LG + + +P+ V E+P+ V
Sbjct: 195 -ISCGYYHSAFVT--------TDGELYIFGEPENGKLGLPYELLSNHRIPQLVPEIPEKV 245
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG H SVV + D++++G+ K L L + I
Sbjct: 246 --IQVACGGEH-SVVLTENDLYTFGLGKFGQLGLGTFLFETSEPRVVESI---------- 292
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
K + ++CG H L+TD G ++++G GR G LG
Sbjct: 293 KGRKISYISCGENHAALLTDTGL-MYTFGDGRHGKLG 328
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 108/235 (45%), Gaps = 37/235 (15%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+ V V ACG H + G Y + G N+ GQLGLGD E R
Sbjct: 78 PTCVKALKPEKVKLAACGRNHTLVSTEGGNVY--------ATGGNDEGQLGLGDTEERTT 129
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
+I F + +++ GS +A LT R + +G GQ+G +
Sbjct: 130 FHLISFFTPQ--HKIKQLSAGSNTSAALTEDGR--------LFMWGDNSEGQIGLPDMPN 179
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAG 225
A VP QV + + CG +H++ V++ G+++ +G E G LGL P L+ +
Sbjct: 180 ACVPHQVTTGKPVSW---ISCGYYHSAFVTTDGELYIFGEPENGKLGL-PYELLSNHRI- 234
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
P L+ P P + +QVACG H+V++T++ L+++G G+ G LG G
Sbjct: 235 ----PQLV----PEIP--EKVIQVACGGEHSVVLTEN--DLYTFGLGKFGQLGLG 277
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 112/265 (42%), Gaps = 51/265 (19%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV---SSFTPSPVWDFHGHTV 59
+I + AG S A+ G L+MWG+ ++EG L ++ P V G V
Sbjct: 141 KIKQLSAGSNTSAALTEDGRLFMWGD------NSEGQIGLPDMPNACVPHQVTT--GKPV 192
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL------GDRESRLRPKIIET 113
++CG H + + GE Y +G NG+LGL R +L P+I
Sbjct: 193 SWISCGYYHSAFVTTDGE--------LYIFGEPENGKLGLPYELLSNHRIPQLVPEI--- 241
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQ 173
P V +V CG H+ +LT ND+ +TFGLG+ GQLG GT +
Sbjct: 242 -----PEKVIQVACGGEHSVVLTE----NDL-----YTFGLGKFGQLGLGTFLFETSEPR 287
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
V E + + + CG H ++++ G ++++G G L + PIL
Sbjct: 288 VVESIKGRKISYISCGENHAALLTDTGLMYTFGD----GRHGKLGLELENFTNQFIPILC 343
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVL 258
S + K VACG H V+
Sbjct: 344 SYLLKYKVKL-----VACGGCHMVV 363
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 93/241 (38%), Gaps = 36/241 (14%)
Query: 39 GFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG 98
G S + TP W F V ++CG EH + + Y +G+NN GQLG
Sbjct: 18 GKSKFTENTPGKFW-FKNDVAVHLSCGDEHSAVVTGNNK--------LYVFGSNNWGQLG 68
Query: 99 LGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENG 158
LG + + +P ++ P V CG HT + T + G + G
Sbjct: 69 LGSKSAVSKPTCVKAL---KPEKVKLAACGRNHTLVSTEG--------GNVYATGGNDEG 117
Query: 159 QLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNAS 218
QLG G T+ + + + G ++ ++ G ++ WG
Sbjct: 118 QLGLGDTEERTTFHLISFFTPQHKIKQLSAGSNTSAALTEDGRLFMWG------------ 165
Query: 219 LTRNEAGDAISPILISGNGPHGPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
N G P + + PH PV ++CG H+ VT DG +L+ +G +G L
Sbjct: 166 --DNSEGQIGLPDMPNACVPHQVTTGKPVSWISCGYYHSAFVTTDG-ELYIFGEPENGKL 222
Query: 278 G 278
G
Sbjct: 223 G 223
>gi|348685253|gb|EGZ25068.1| hypothetical protein PHYSODRAFT_326137 [Phytophthora sojae]
Length = 5016
Score = 79.7 bits (195), Expect = 3e-12, Method: Composition-based stats.
Identities = 83/309 (26%), Positives = 124/309 (40%), Gaps = 57/309 (18%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGH------TVVKVACGSEHVVALVSAG 76
L WG L + G ++ SS TP V F H ++ V+CG HV +
Sbjct: 195 LLAWG---LNSNGELGNGTMTSSPTPQMVVTFPLHFQREPLSIAHVSCGKHHVAVITGQA 251
Query: 77 ETYKGEDLVCYSWGANNNGQLGLGDRESRLRP-----------------KIIETFNQDSP 119
+ +WG+N GQLGLGD SR +P +++ T Q
Sbjct: 252 RLF--------TWGSNKYGQLGLGDFSSRTQPEEVHFALATLSSHRRALRVMHTV-QHGG 302
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V V CG+ HT +TH+++ M + GLG Q G + P V+ L
Sbjct: 303 NNVTHVACGAAHTLFVTHQQQILGMGYNQAGQLGLGHRLQQYKG--WRSCTPITVESLRD 360
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS-PILISGNGP 238
L + G H++ V S GDV++WG + L + G+ ++ P LI
Sbjct: 361 QSIL-DLGAGQNHSACVLSNGDVYTWGCGD------DGRLGDGKLGEGVAVPTLI----- 408
Query: 239 HGPKFQDPV----QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
P ++ V CGA H +++D L+ WG G LG P ++ P
Sbjct: 409 --PLLREASIRARTVRCGARHMAVISDSDL-LYIWGANDFGQLGCKDRKPRSQPFLLATP 465
Query: 295 PLTEEFKQD 303
PL E +D
Sbjct: 466 PLFAEGVED 474
Score = 60.5 bits (145), Expect = 2e-06, Method: Composition-based stats.
Identities = 59/221 (26%), Positives = 98/221 (44%), Gaps = 38/221 (17%)
Query: 45 SFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-E 103
S TP V +++ + G H ++S G+ Y +WG ++G+LG G E
Sbjct: 349 SCTPITVESLRDQSILDLGAGQNHSACVLSNGDVY--------TWGCGDDGRLGDGKLGE 400
Query: 104 SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
P +I + S A V CG+ H A+++ +D+L + +G + GQLG
Sbjct: 401 GVAVPTLIPLLREASIRA-RTVRCGARHMAVISD----SDLL----YIWGANDFGQLGCK 451
Query: 164 TTQSALVPEQVKELPQYVYLVS-VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
+ P + P + V V G FHT+ V+SAG ++WG+ +L N
Sbjct: 452 DRKPRSQPFLLATPPLFAEGVEDVALGEFHTTCVTSAGKAYTWGL----------NLRDN 501
Query: 223 EAGDAISPILISGNGPHG---PKFQDPVQVACGAAHTVLVT 260
A ++ S + P P+ + +V+CG HT +VT
Sbjct: 502 SA------LVASHHTPQAIDLPEKERVRKVSCGWTHTDIVT 536
>gi|444917320|ref|ZP_21237422.1| hypothetical protein D187_10036 [Cystobacter fuscus DSM 2262]
gi|444711215|gb|ELW52165.1| hypothetical protein D187_10036 [Cystobacter fuscus DSM 2262]
Length = 773
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 114/284 (40%), Gaps = 48/284 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S +V G S A+ G +W WG L T S TP PV T +
Sbjct: 446 LSDAVAVSLGNDYSFALRADGTVWAWGWYGLFADGTS-----TSRSTPGPVPGLTSITAL 500
Query: 61 KVA--CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VA + H +A+ D ++WG N +GQ+G G + +L P +
Sbjct: 501 SVAPNAATGHALAVR--------VDGTVWAWGDNTSGQVGNGTKLRQLAPIQVPDLTN-- 550
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V V GS H+ L + W +G + GQLG GT L+P QV P
Sbjct: 551 ---VVAVATGSMHSFALRQ--------DGTVWAWGDNQFGQLGDGTRLGRLIPFQV---P 596
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGM--EKGLGLCPNASLTRNEAGDAISPILISGN 236
+V++ G FHT + + G VW+WG LG +S +P + G
Sbjct: 597 GLTNVVAIASGAFHTLALRADGTVWAWGYNWHGQLGDGSTSSFR-------PTPARVEG- 648
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
D +A G HT+ + DG +W+WGR SG L G
Sbjct: 649 ------LTDVSALAAGDWHTLALRTDG-TVWAWGRNGSGQLADG 685
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 123/321 (38%), Gaps = 70/321 (21%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
+ ++ AGG +LA+ G LW WG+ T V P P+ D + V VA
Sbjct: 350 VMAIAAGGRQALALRRDGTLWGWGDNRFGQLGTGSNLRTV----PVPLKDLG--SEVSVA 403
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE--------SRLRPKIIETFN 115
S H +A+ + G ++WG+N+ GQLG G E S L + +
Sbjct: 404 FNSYHALAVRADGS--------LWAWGSNHRGQLGDGTTETRTEPTRVSGLSDAVAVSLG 455
Query: 116 QDSPWAVYEVTC-------GSFHTALLTHRKRPNDM------------------------ 144
D +A+ G F T R P +
Sbjct: 456 NDYSFALRADGTVWAWGWYGLFADGTSTSRSTPGPVPGLTSITALSVAPNAATGHALAVR 515
Query: 145 LESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
++ W +G +GQ+G+GT L P QV P +V+V G H+ + G VW+
Sbjct: 516 VDGTVWAWGDNTSGQVGNGTKLRQLAPIQV---PDLTNVVAVATGSMHSFALRQDGTVWA 572
Query: 205 WGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGY 264
WG + L L R + P + P + V +A GA HT+ + DG
Sbjct: 573 WGDNQFGQLGDGTRLGR------LIPFQV-------PGLTNVVAIASGAFHTLALRADG- 618
Query: 265 KLWSWGRGRSGVLGTGKTIDF 285
+W+WG G LG G T F
Sbjct: 619 TVWAWGYNWHGQLGDGSTSSF 639
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 73/178 (41%), Gaps = 33/178 (18%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
++ + +V G M S A+ G +W WG+ L D + G L+ P
Sbjct: 548 LTNVVAVATGSMHSFALRQDGTVWAWGDNQFGQLGDGTRLG--RLIPFQVPGLT------ 599
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES-RLRPKIIETFNQ 116
VV +A G+ H +AL + D ++WG N +GQLG G S R P +E
Sbjct: 600 NVVAIASGAFHTLALRA--------DGTVWAWGYNWHGQLGDGSTSSFRPTPARVEGLTD 651
Query: 117 DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
V + G +HT L + W +G +GQL GT + VP QV
Sbjct: 652 -----VSALAAGDWHTLAL--------RTDGTVWAWGRNGSGQLADGTVEPRSVPTQV 696
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 113/325 (34%), Gaps = 68/325 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ + +V G + SLA+ G +W WG+ T G V+ TP + V
Sbjct: 88 LQDVEAVANGSLHSLALRRDGTVWTWGDNQFGQLGT--GEPWVTHATPQHLPSLT--NVA 143
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+A +H +AL D + WG N GQLG L P +
Sbjct: 144 AIAASEDHSLALR--------RDGTVWVWGNNRYGQLGGAGNVLLLEPTHLAGLTD---- 191
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ + H L + W +G + GQLG GTT+S QV L
Sbjct: 192 -IAAIATSPSHRLAL--------RADGTVWAWGSNQTGQLGDGTTESRGTVAQVTALTDV 242
Query: 181 VYLVSVDCG------LFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPIL 232
V + + G H+ + G VW+WG + LG N + ++ ++
Sbjct: 243 VAIAAGGTGSGTINKTGHSLALRRDGTVWAWGDNQFGQLGDGTNQPRSTPARVQGLTNVV 302
Query: 233 -ISGN---------------------GPHGPKF---QDPVQV---------ACGAAHTVL 258
ISGN GP G P QV A G +
Sbjct: 303 SISGNSRSSLALRRDGTVWAWGDRMDGPLGGTSGLQTTPAQVQGLRGVMAIAAGGRQALA 362
Query: 259 VTDDGYKLWSWGRGRSGVLGTGKTI 283
+ DG LW WG R G LGTG +
Sbjct: 363 LRRDG-TLWGWGDNRFGQLGTGSNL 386
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 98/286 (34%), Gaps = 49/286 (17%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALV 73
SLA+D GALW WG D G + + TP V V VA GS H +AL
Sbjct: 51 SLAVDAHGALWAWG---YNDFGQLGDGTANAHLTPIRVPGL--QDVEAVANGSLHSLALR 105
Query: 74 SAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133
D ++WG N GQLG G+ P + Q P +
Sbjct: 106 --------RDGTVWTWGDNQFGQLGTGE------PWVTHATPQHLPSLTNVAAIAASEDH 151
Query: 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
L R+ + W +G GQLG L P + L + + H
Sbjct: 152 SLALRR------DGTVWVWGNNRYGQLGGAGNVLLLEPTHLAGLTDIAAIATSPS---HR 202
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
+ + G VW+WG + L + +R + D V +A G
Sbjct: 203 LALRADGTVWAWGSNQTGQLGDGTTESRGTVAQVTA-------------LTDVVAIAAGG 249
Query: 254 AHTVLVTDDGYKL--------WSWGRGRSGVLGTGKTIDFFAPAIV 291
+ + G+ L W+WG + G LG G PA V
Sbjct: 250 TGSGTINKTGHSLALRRDGTVWAWGDNQFGQLGDGTNQPRSTPARV 295
>gi|126330876|ref|XP_001375975.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Monodelphis
domestica]
Length = 1016
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 124/296 (41%), Gaps = 55/296 (18%)
Query: 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF-TPSPVWDFHGHTVVKVACGSE 67
G SL + + G +W GN +S + G P+ + +V V+CG E
Sbjct: 44 CGERHSLLLLSDGTVWSCGN----NSCGQLGRKRCQKHGRPAQIQALETQDIVSVSCGKE 99
Query: 68 HVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC 127
H +A+ G +SWG+ ++GQLG+ RE + I + ++ S + + +V+C
Sbjct: 100 HSLAICKEGRV--------FSWGSGSDGQLGI--REFKKLSSIPKKIDELSSFKIIQVSC 149
Query: 128 GSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG-TTQSALVPEQVKELPQYVYLVSV 186
G +H+ L R +++G +GQLG G S P+ VK L + L V
Sbjct: 150 GHYHSIALAQDGR--------VFSWGKNNHGQLGLGENVPSQASPQWVKSLDG-IPLAQV 200
Query: 187 DCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 246
G H+ +S +G + WG RN AG + +SG + P
Sbjct: 201 AAGGAHSFALSFSGTSYGWG--------------RNNAGQ----LALSGKKESAEQISKP 242
Query: 247 VQ-----------VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++CG HT ++T DG K++++G SG LG P +V
Sbjct: 243 FSIGELKRLQVTYISCGDEHTAVLTQDG-KVFTFGSNDSGQLGRQLISGMKGPQVV 297
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 128/283 (45%), Gaps = 58/283 (20%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGG-----FSLVSSFTPSPVWDFHGHT 58
I SV G SLAI G ++ WG S ++G F +SS P + +
Sbjct: 91 IVSVSCGKEHSLAICKEGRVFSWG------SGSDGQLGIREFKKLSSI-PKKIDELSSFK 143
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR-ESRLRPKIIETFNQD 117
+++V+CG H +AL G + SWG NN+GQLGLG+ S+ P+ +++ +
Sbjct: 144 IIQVSCGHYHSIALAQDGRVF--------SWGKNNHGQLGLGENVPSQASPQWVKSLD-G 194
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG-HGTTQSA---LVPEQ 173
P A +V G H+ L+ + +G GQL G +SA P
Sbjct: 195 IPLA--QVAAGGAHSFALS--------FSGTSYGWGRNNAGQLALSGKKESAEQISKPFS 244
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
+ EL + + + + CG HT+V++ G V+++G N++G + LI
Sbjct: 245 IGELKR-LQVTYISCGDEHTAVLTQDGKVFTFG--------------SNDSGQ-LGRQLI 288
Query: 234 SGNGPHGPKFQDPV----QVACGAAHTVLVTDDGYKLWSWGRG 272
SG GP+ D Q+ACG+ HT+ + ++ S+G G
Sbjct: 289 SGM--KGPQVVDSAVSFSQIACGSYHTLAYSCTTGQVISFGCG 329
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 29/202 (14%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDS--PWAVYEVTCGSFHTALLTHRKRPNDM 144
Y WG N++GQLG+ R + + + S + + CG H+ LL +
Sbjct: 3 YCWGDNSSGQLGI-PAVPRAKARAVRCRRGASLGNQTLLQAACGERHSLLL--------L 53
Query: 145 LESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWS 204
+ W+ G GQLG Q P Q++ L + +VSV CG H+ + G V+S
Sbjct: 54 SDGTVWSCGNNSCGQLGRKRCQKHGRPAQIQAL-ETQDIVSVSCGKEHSLAICKEGRVFS 112
Query: 205 W--GMEKGLGLCPNASLTR-NEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
W G + LG+ L+ + D +S I +QV+CG H++ +
Sbjct: 113 WGSGSDGQLGIREFKKLSSIPKKIDELSSFKI-------------IQVSCGHYHSIALAQ 159
Query: 262 DGYKLWSWGRGRSGVLGTGKTI 283
DG +++SWG+ G LG G+ +
Sbjct: 160 DG-RVFSWGKNNHGQLGLGENV 180
>gi|348684000|gb|EGZ23815.1| hypothetical protein PHYSODRAFT_449139 [Phytophthora sojae]
Length = 539
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 122/296 (41%), Gaps = 51/296 (17%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV--WDFHGHTVVKVACGSEHVVA 71
S+AI G WGN D G S +TP + G V +ACG H +A
Sbjct: 222 SIAITAKGEAMAWGN---GDKYRLGHGSSSKEYTPRTIEFLSLKGR-VRDLACGLGHTLA 277
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
L+ +GE Y +WG +NG+LGLGD R P +P + CG+ H
Sbjct: 278 LIESGELY--------AWGNGSNGRLGLGDTNDRSSP-TRSNGASIAPVRFRHIFCGASH 328
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ------YVYLVS 185
+ L+ R + +G GQ GHG T ++++ ++V
Sbjct: 329 SLGLSWDGRA--------YAWGKNNQGQCGHGHTNDQWTIQEIESFRDTEEGEEEEFVVY 380
Query: 186 VDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK--- 242
G HT +++G V+S G C R I P+L G+ K
Sbjct: 381 AAGGWEHTLFCTASGRVYSCG-------CGYKDSRRA----GIPPVLGHGDCDRRLKPTS 429
Query: 243 -------FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ V+VACG H++ VT +G ++++WG G +G LG G F P +V
Sbjct: 430 VQALDDTHEEVVKVACGWDHSLAVTANG-RVYTWGSGANGKLGHGDEESFDIPTLV 484
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 113/280 (40%), Gaps = 38/280 (13%)
Query: 14 SLAIDNAGALWMWGN-----CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 68
+LA+ +G L+ WGN L D++ + + + +PV H + CG+ H
Sbjct: 275 TLALIESGELYAWGNGSNGRLGLGDTNDRSSPTRSNGASIAPVRFRH------IFCGASH 328
Query: 69 VVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP-----WAVY 123
+ L G Y +WG NN GQ G G + + IE+F + VY
Sbjct: 329 SLGLSWDGRAY--------AWGKNNQGQCGHGHTNDQWTIQEIESFRDTEEGEEEEFVVY 380
Query: 124 EVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ-YVY 182
G HT T R + G LGHG L P V+ L +
Sbjct: 381 AAG-GWEHTLFCTASGRVYSCGCGYKDSRRAGIPPVLGHGDCDRRLKPTSVQALDDTHEE 439
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
+V V CG H+ V++ G V++WG N L + P L+ G K
Sbjct: 440 VVKVACGWDHSLAVTANGRVYTWGSG------ANGKLGHGDEESFDIPTLV--RCMDGKK 491
Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
+D G HTV +T D ++LW+ G+G SG LG G +
Sbjct: 492 VKD---AKAGCEHTVFLTYD-HELWTCGQGDSGRLGHGDS 527
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 19/117 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VVKVACG +H +A+ + G Y +WG+ NG+LG GD ES P ++ +
Sbjct: 440 VVKVACGWDHSLAVTANGRVY--------TWGSGANGKLGHGDEESFDIPTLVRCMDGKK 491
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK 175
V + G HT LT+ + WT G G++G+LGHG +Q+ P +++
Sbjct: 492 ---VKDAKAGCEHTVFLTY--------DHELWTCGQGDSGRLGHGDSQTRKRPTKIE 537
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 12/152 (7%)
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFH 192
+L TH E+M W G G+ +LGHG++ P ++ L + + CGL H
Sbjct: 217 SLSTHSIAITAKGEAMAW--GNGDKYRLGHGSSSKEYTPRTIEFLSLKGRVRDLACGLGH 274
Query: 193 TSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACG 252
T + +G++++WG N L + D SP +G +F+ + CG
Sbjct: 275 TLALIESGELYAWGNGS------NGRLGLGDTNDRSSPTRSNGASIAPVRFR---HIFCG 325
Query: 253 AAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
A+H++ ++ DG + ++WG+ G G G T D
Sbjct: 326 ASHSLGLSWDG-RAYAWGKNNQGQCGHGHTND 356
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 23/149 (15%)
Query: 151 TFGLGENGQLGHG-----------TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
+FG G++G+LGHG T++ +VP + + V +D H+ +++
Sbjct: 170 SFGKGDHGKLGHGQCSHVSCQEGNCTENKMVPTMIAA-TRDVLFRKIDSLSTHSIAITAK 228
Query: 200 GDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLV 259
G+ +WG L + S ++ I + + G + +D +ACG HT+ +
Sbjct: 229 GEAMAWGNGDKYRL-GHGSSSKEYTPRTIEFLSLKG------RVRD---LACGLGHTLAL 278
Query: 260 TDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ G +L++WG G +G LG G T D +P
Sbjct: 279 IESG-ELYAWGNGSNGRLGLGDTNDRSSP 306
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSF-TPSPVWDFHGHTVVK 61
++ V G SLA+ G ++ WG+ ++ + G SF P+ V G V
Sbjct: 439 EVVKVACGWDHSLAVTANGRVYTWGS----GANGKLGHGDEESFDIPTLVRCMDGKKVKD 494
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
G EH V L TY E C G ++G+LG GD ++R RP IE F
Sbjct: 495 AKAGCEHTVFL-----TYDHELWTC---GQGDSGRLGHGDSQTRKRPTKIELF 539
>gi|296189260|ref|XP_002742707.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Callithrix
jacchus]
Length = 547
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 93/219 (42%), Gaps = 22/219 (10%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLT----- 136
ED V Y+WG N QLG G + P I+ V EV CGS H+ L
Sbjct: 92 EDGVVYAWGHNGYSQLGNGTTNQGVAP--IQVCTNLLIKQVVEVACGSHHSMALAADGEF 149
Query: 137 ---HRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT 193
+ + +G GQ+G G+T + P +V +V + CG +
Sbjct: 150 RVAGGHSLSGSSGYQVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSS 209
Query: 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
V G+V+ WG N L G+ ++P+ ++ H Q+ CG
Sbjct: 210 MAVLDNGEVYGWGYNG------NGQLGLGNNGNQLTPVRVA--ALHSVCVN---QIVCGY 258
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
AHT+ +TD+G L++WG G LGTG + +PA ++
Sbjct: 259 AHTLALTDEGL-LYAWGANTYGQLGTGNKNNLLSPAHIM 296
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 129/330 (39%), Gaps = 54/330 (16%)
Query: 21 GALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 77
G ++ WG+ L + +T G + + T + VV+VACGS H +AL + GE
Sbjct: 94 GVVYAWGHNGYSQLGNGTTNQGVAPIQVCTNLLI-----KQVVEVACGSHHSMALAADGE 148
Query: 78 --------TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGS 129
++WG NN GQ+G G ++ P+ + N V + CG
Sbjct: 149 FRVAGGHSLSGSSGYQVFAWGYNNCGQVGSGSTANQPTPRKVT--NCLHIKRVVGIACGQ 206
Query: 130 FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCG 189
T D E W G NGQLG G + L P +V L V + + CG
Sbjct: 207 ------TSSMAVLDNGEVYGW--GYNGNGQLGLGNNGNQLTPVRVAAL-HSVCVNQIVCG 257
Query: 190 LFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQV 249
HT ++ G +++WG L + +SP I + + V++
Sbjct: 258 YAHTLALTDEGLLYAWGANT------YGQLGTGNKNNLLSPAHIM------VEKERVVEI 305
Query: 250 A-CGAAHTVLVTDDGYKLWSWG--RGRSGVL-------GTGKTIDFFAPAIVLWPPLTEE 299
A C +AHT G ++ WG RG+S +L T FA V W L+ E
Sbjct: 306 AACHSAHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACFATPAVSWRLLSVE 365
Query: 300 FKQDELNTGGLDDEIKTKDLEGAEERDEKL 329
+D L E K+ + E D K
Sbjct: 366 -HEDFLTVA----ESLKKEFDSPETADLKF 390
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 27/151 (17%)
Query: 150 WTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSWGME 208
+ FGL + LG G QS LVP++++ L + + +S G H + + G V++WG
Sbjct: 44 FVFGLNYSNCLGTGDNQSTLVPKKLEGLCGKKIKSLSYGSGP-HVLLSTEDGVVYAWGHN 102
Query: 209 KGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDG----- 263
+ L ++PI + N + V+VACG+ H++ + DG
Sbjct: 103 G------YSQLGNGTTNQGVAPIQVCTN----LLIKQVVEVACGSHHSMALAADGEFRVA 152
Query: 264 ----------YKLWSWGRGRSGVLGTGKTID 284
Y++++WG G +G+G T +
Sbjct: 153 GGHSLSGSSGYQVFAWGYNNCGQVGSGSTAN 183
>gi|330845272|ref|XP_003294517.1| hypothetical protein DICPUDRAFT_159521 [Dictyostelium purpureum]
gi|325075008|gb|EGC28958.1| hypothetical protein DICPUDRAFT_159521 [Dictyostelium purpureum]
Length = 594
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 33/273 (12%)
Query: 21 GALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVK-VACGSEHVVALVSAGET 78
G ++ WG G +++ PSPV + +K +ACG H +A+ A
Sbjct: 71 GLVYSWGYNYFGQCGNGGNQTII---VPSPVQFSIDIKISIKTIACGDSHTLAI--AENP 125
Query: 79 YKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHR 138
Y YSWG N GQLGLGD+ +R +P I N + CGS H+ ++++
Sbjct: 126 YG-----LYSWGCNRWGQLGLGDQINRNQPTRI---NHSDRATFVAIACGSQHSMIVSNF 177
Query: 139 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSS 198
+TFG G G+LG G P V L +VS G+ H+S V S
Sbjct: 178 GE--------LYTFGCGTTGRLGLGDESPRFKPTVVSSLVGK-QIVSCGAGVMHSSCVDS 228
Query: 199 AGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVL 258
G ++S+G + G S+ + + I+ V+V CG HT+
Sbjct: 229 TGKIYSFGWNR-YGQLGTGSVKSHTLPAKMKETQITSK-------MHFVKVVCGKNHTLA 280
Query: 259 VTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++++G ++ S+G G LG G +D P +
Sbjct: 281 LSNNG-EMVSFGFNACGQLGVGSHLDQINPTKI 312
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 128/320 (40%), Gaps = 60/320 (18%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSL---VSSFTPSPVWDFHGHTVVKV 62
++ G S+ + N G L+ +G T G L F P+ V G +V
Sbjct: 163 AIACGSQHSMIVSNFGELYTFG------CGTTGRLGLGDESPRFKPTVVSSLVGKQIVSC 216
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
G H + S G+ Y S+G N GQLG G +S P ++ S
Sbjct: 217 GAGVMHSSCVDSTGKIY--------SFGWNRYGQLGTGSVKSHTLPAKMKETQITSKMHF 268
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
+V CG HT L++ +M+ +FG GQLG G+ + P ++ E + V
Sbjct: 269 VKVVCGKNHTLALSNN---GEMV-----SFGFNACGQLGVGSHLDQINPTKI-EFSEKV- 318
Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGM--EKGLGLCP--------------NASLTRNEAGD 226
+ + G +H+ V+ G+ +SWG + GLGL + T +++ D
Sbjct: 319 -LDIATGYYHSLCVTDNGEAYSWGYMSDGGLGLSEVYTHQTKPKLIPLVHIRHTFSDSND 377
Query: 227 AISPILISGN--------GPHGPKFQDPV-------QVACGAAHTVLVTDDGYKLWSWGR 271
A I G+ H QD +V GA ++ ++T G KL+++G
Sbjct: 378 AFDEIYGKGDENTTEETIENHKKYIQDKYSTGDFVEKVGAGAWNSAIITSSG-KLYTFGY 436
Query: 272 GRSGVLGTGKTIDFFAPAIV 291
G + G + D P I+
Sbjct: 437 GDTFRTGNHEENDQDIPIII 456
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 45/220 (20%)
Query: 82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRP 141
ED + YSWG N GQ G G ++ + P ++ F+ D ++ + CG HT L + P
Sbjct: 69 EDGLVYSWGYNYFGQCGNGGNQTIIVPSPVQ-FSIDIKISIKTIACGDSHT--LAIAENP 125
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGD 201
+ +++G GQLG G + P ++ + + V++ CG H+ +VS+ G+
Sbjct: 126 YGL-----YSWGCNRWGQLGLGDQINRNQPTRINHSDRATF-VAIACGSQHSMIVSNFGE 179
Query: 202 VWSW--GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ--------VAC 251
++++ G LGL G P+F+ V V+C
Sbjct: 180 LYTFGCGTTGRLGL-----------------------GDESPRFKPTVVSSLVGKQIVSC 216
Query: 252 GAA--HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA 289
GA H+ V G K++S+G R G LGTG PA
Sbjct: 217 GAGVMHSSCVDSTG-KIYSFGWNRYGQLGTGSVKSHTLPA 255
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 14/152 (9%)
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK-ELPQYVYLVSVDCGLFHT-SVVSSA 199
N + + +++G GQ G+G Q+ +VP V+ + + + ++ CG HT ++ +
Sbjct: 66 NSNEDGLVYSWGYNYFGQCGNGGNQTIIVPSPVQFSIDIKISIKTIACGDSHTLAIAENP 125
Query: 200 GDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLV 259
++SWG + L + RN+ P I N F V +ACG+ H+++V
Sbjct: 126 YGLYSWGCNRWGQLGLGDQINRNQ------PTRI--NHSDRATF---VAIACGSQHSMIV 174
Query: 260 TDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
++ G +L+++G G +G LG G F P +V
Sbjct: 175 SNFG-ELYTFGCGTTGRLGLGDESPRFKPTVV 205
>gi|444911573|ref|ZP_21231747.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
gi|444717927|gb|ELW58746.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
Length = 708
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 112/278 (40%), Gaps = 51/278 (18%)
Query: 14 SLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVV 70
SLA+ G+ W WG+ L D ST +P+PV VV VA GS H +
Sbjct: 373 SLAVSADGSAWAWGHNSHGELGDGSTR--------NSPAPVRVDGLKEVVAVAAGSSHSL 424
Query: 71 ALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF 130
AL++ D +WG N GQLG G R S P + V V GS
Sbjct: 425 ALLA--------DGTVLAWGDNTFGQLGDGTRASHSVPAQVRGLR-----GVVAVAAGSS 471
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
H+ L + + WT+G NGQLG GTT P VK L +V+V G
Sbjct: 472 HSLAL--------LADGTVWTWGYNLNGQLGDGTTTYRYEPVAVKGLEG---VVAVAAGG 520
Query: 191 FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
H+ V S G W+WG E G + +LT A P+ + Q
Sbjct: 521 NHSLAVRSDGTAWAWG-ENVKGQLGDGTLTSRPA-----PVEVKAAAKAVAAAQ------ 568
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
++ V DG+ W+WG SG LG G T P
Sbjct: 569 ---GLSLAVGSDGFP-WAWGNNSSGQLGDGSTTSRPMP 602
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 126/328 (38%), Gaps = 72/328 (21%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+S + +V AGG SLA+ + G +W WGN S G S + P V G VV
Sbjct: 59 LSGVVTVAAGGGHSLAVHSDGTVWAWGNN---SSGQLGDGSFDNRAEPVRVRGLSG--VV 113
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIET------- 113
VA G H +A+ + D ++WG N++GQLG G ++R P +
Sbjct: 114 AVAAGGYHSLAVSA--------DGTVWAWGNNSSGQLGDGSFDNRAEPVRVRGSSGVVAV 165
Query: 114 --------------------------------FNQDSPWAVYEVTCGSFHTALLTHRKRP 141
FN P V VT G +A H
Sbjct: 166 AAGGAHSLAVRSDGILWAWGDNLYGQLGNRGEFNSSEPVQVLRVTGGVTVSAGANHSLAV 225
Query: 142 NDMLESMCWTFGLGENGQLGHGTTQSAL-VPEQVKELPQYVYLVSVDCGLFHTSVVSSAG 200
+ + W +G +GQLG T L +P +V E+ V + + D H+ V G
Sbjct: 226 S--ADGTVWAWGDNSHGQLGIARTTPLLSIPGRVPEVRGSVAMAAGDN---HSLAVRDDG 280
Query: 201 DVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVT 260
VW+WG G G N + N P + P + VA G+ H++ V
Sbjct: 281 TVWAWG-SNGHGQLGNGFMVDNS-----EPGRV-------PGLEGVGAVAAGSNHSLAVR 327
Query: 261 DDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
DDG +W+WG G G G T AP
Sbjct: 328 DDG-TVWAWGSNVEGQRGDGTTGQLSAP 354
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 119/290 (41%), Gaps = 47/290 (16%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG--GFSLVSSFTPSPVWDFHGHT 58
+ + +V AG SLA+ + G +W WG S+ EG G + +P
Sbjct: 310 LEGVGAVAAGSNHSLAVRDDGTVWAWG------SNVEGQRGDGTTGQLS-APTRVPGVSG 362
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
VV VA H +A+ + G ++WG N++G+LG G + P ++ +
Sbjct: 363 VVGVAANVFHSLAVSADGS--------AWAWGHNSHGELGDGSTRNSPAPVRVDGLKE-- 412
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V V GS H+ L + + +G GQLG GT S VP QV+ L
Sbjct: 413 ---VVAVAAGSSHSLAL--------LADGTVLAWGDNTFGQLGDGTRASHSVPAQVRGLR 461
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
+V+V G H+ + + G VW+WG L + R E P+ + G
Sbjct: 462 G---VVAVAAGSSHSLALLADGTVWTWGYNLNGQLGDGTTTYRYE------PVAVKG--- 509
Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
+ V VA G H++ V DG W+WG G LG G AP
Sbjct: 510 ----LEGVVAVAAGGNHSLAVRSDGTA-WAWGENVKGQLGDGTLTSRPAP 554
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 126/314 (40%), Gaps = 65/314 (20%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ ++ +V AG SLA+ G + WG+ G + S P+ V G VV
Sbjct: 410 LKEVVAVAAGSSHSLALLADGTVLAWGDNTF---GQLGDGTRASHSVPAQVRGLRG--VV 464
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF------ 114
VA GS H +AL++ D ++WG N NGQLG G R P ++
Sbjct: 465 AVAAGSSHSLALLA--------DGTVWTWGYNLNGQLGDGTTTYRYEPVAVKGLEGVVAV 516
Query: 115 -----------NQDSPWAVYEVTCGSFHTALLTHRKRPNDML------------------ 145
+ + WA E G LT R P ++
Sbjct: 517 AAGGNHSLAVRSDGTAWAWGENVKGQLGDGTLTSRPAPVEVKAAAKAVAAAQGLSLAVGS 576
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSW 205
+ W +G +GQLG G+T S +P +V+ + +V+V G H+ +S G VW+W
Sbjct: 577 DGFPWAWGNNSSGQLGDGSTTSRPMPMRVQGAGE---VVAVAAGNGHSLALSPEGGVWAW 633
Query: 206 GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
G + G +L R ++P + G V VA G A ++ V DDG
Sbjct: 634 G-QNARGQLGEGTLDRR-----LAPTRVQG-------LSGVVAVAAGGAFSLAVRDDG-S 679
Query: 266 LWSWGRGRSGVLGT 279
+WSWG G LG
Sbjct: 680 VWSWGDNAFGQLGN 693
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 95/260 (36%), Gaps = 68/260 (26%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+ + +V AG SLA+ G +W WG N L D +T + P V G
Sbjct: 460 LRGVVAVAAGSSHSLALLADGTVWTWGYNLNGQLGDGTT------TYRYEPVAVKGLEG- 512
Query: 58 TVVKVACGSEHVVALVSAGETYK------------------------------------- 80
VV VA G H +A+ S G +
Sbjct: 513 -VVAVAAGGNHSLAVRSDGTAWAWGENVKGQLGDGTLTSRPAPVEVKAAAKAVAAAQGLS 571
Query: 81 ---GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 137
G D ++WG N++GQLG G SR P ++ + V V G+ H+ L+
Sbjct: 572 LAVGSDGFPWAWGNNSSGQLGDGSTTSRPMPMRVQGAGE-----VVAVAAGNGHSLALSP 626
Query: 138 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 197
E W +G GQLG GT L P +V+ L V + + + V
Sbjct: 627 --------EGGVWAWGQNARGQLGEGTLDRRLAPTRVQGLSGVVAVAAGGA---FSLAVR 675
Query: 198 SAGDVWSWGMEKGLGLCPNA 217
G VWSWG + G NA
Sbjct: 676 DDGSVWSWG-DNAFGQLGNA 694
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 62/146 (42%), Gaps = 17/146 (11%)
Query: 146 ESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSW 205
+ W G GQLG GTT VP +V L +V+V G H+ V S G VW+W
Sbjct: 28 DGTVWAVGGNSVGQLGDGTTSLRRVPVRVLGLSG---VVTVAAGGGHSLAVHSDGTVWAW 84
Query: 206 GMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYK 265
G L + R E P+ + G V VA G H++ V+ DG
Sbjct: 85 GNNSSGQLGDGSFDNRAE------PVRVRG-------LSGVVAVAAGGYHSLAVSADG-T 130
Query: 266 LWSWGRGRSGVLGTGKTIDFFAPAIV 291
+W+WG SG LG G + P V
Sbjct: 131 VWAWGNNSSGQLGDGSFDNRAEPVRV 156
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 95/233 (40%), Gaps = 38/233 (16%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++A G H +++ +D ++ G N+ GQLG G R P + +
Sbjct: 13 ARIATGGSHSLSVH--------QDGTVWAVGGNSVGQLGDGTTSLRRVPVRVLGLS---- 60
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V V G H+ L H + W +G +GQLG G+ + P +V+ L
Sbjct: 61 -GVVTVAAGGGHS-LAVHS-------DGTVWAWGNNSSGQLGDGSFDNRAEPVRVRGLSG 111
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+V+V G +H+ VS+ G VW+WG L + R E P+ +
Sbjct: 112 ---VVAVAAGGYHSLAVSADGTVWAWGNNSSGQLGDGSFDNRAE------PVRVR----- 157
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
V VA G AH++ V DG LW+WG G LG + P VL
Sbjct: 158 --GSSGVVAVAAGGAHSLAVRSDGI-LWAWGDNLYGQLGNRGEFNSSEPVQVL 207
>gi|195336543|ref|XP_002034895.1| GM14399 [Drosophila sechellia]
gi|194127988|gb|EDW50031.1| GM14399 [Drosophila sechellia]
Length = 1058
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 120/299 (40%), Gaps = 46/299 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGN--CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
I + G SLA+ + G + WG+ C +TE + P V TVV+
Sbjct: 92 IIQISCGSRHSLALSDWGQVLSWGDNDCGQLGHATEKEIVQL----PKVVRQLVSKTVVQ 147
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 121
+ACG+ H +AL S GE Y SWG+N GQLG+
Sbjct: 148 IACGNNHSLALTSCGELY--------SWGSNIYGQLGVNSPNDLTHCNYPLRLTTLLGIP 199
Query: 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKELPQ 179
+ + CG H+ L++ FG G N GQLG + P Q+K L +
Sbjct: 200 LAAIACGGNHSFLISKSGA----------VFGWGRNNCGQLGLNDETNRAYPTQLKTL-R 248
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISG 235
+ + V CG + +++ G V++ G + G G N L R S I
Sbjct: 249 TLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQLGHGFSSNEMLPRMVMELMGSTI---- 304
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWP 294
QVACG HT+ + K++++G G SG LGT T P +V+ P
Sbjct: 305 -----------TQVACGNRHTLALVPSRGKVYAFGLGSSGQLGTRSTKSLMLPQVVIGP 352
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 36/223 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +VACG H + L + G+ Y+ G+N+ QLG D ++ RP++I QD
Sbjct: 42 VQQVACGHRHTLFLTATGKV--------YACGSNDYSQLG-HDLPTK-RPQLIPEL-QD- 89
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL-VPEQVKEL 177
+ + +++CGS H+ L+ D + + W G + GQLGH T + + +P+ V++L
Sbjct: 90 -YVIIQISCGSRHSLALS------DWGQVLSW--GDNDCGQLGHATEKEIVQLPKVVRQL 140
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISG 235
+V + CG H+ ++S G+++SWG + LG+ LT ++ +L
Sbjct: 141 VSKT-VVQIACGNNHSLALTSCGELYSWGSNIYGQLGVNSPNDLTHCNYPLRLTTLL--- 196
Query: 236 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
G +ACG H+ L++ G ++ WGR G LG
Sbjct: 197 ----GIPL---AAIACGGNHSFLISKSG-AVFGWGRNNCGQLG 231
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 95/211 (45%), Gaps = 37/211 (17%)
Query: 81 GEDLVCYSWGANNNGQLGLG--DRESRLRPKIIETFNQDSPW----AVYEVTCGSFHTAL 134
G++L C WG+ ++GQLGLG + E L P+ I PW AV +V CG HT
Sbjct: 4 GKELYC--WGSTSHGQLGLGGIEDEQILTPRQI-------PWTPDTAVQQVACGHRHTLF 54
Query: 135 LTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTS 194
LT + + G + QLGH P+ + EL YV ++ + CG H+
Sbjct: 55 LTATGK--------VYACGSNDYSQLGHDLPTKR--PQLIPELQDYV-IIQISCGSRHSL 103
Query: 195 VVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAA 254
+S G V SWG + G +A+ + L+S + VQ+ACG
Sbjct: 104 ALSDWGQVLSWG-DNDCGQLGHATEKEIVQLPKVVRQLVS---------KTVVQIACGNN 153
Query: 255 HTVLVTDDGYKLWSWGRGRSGVLGTGKTIDF 285
H++ +T G +L+SWG G LG D
Sbjct: 154 HSLALTSCG-ELYSWGSNIYGQLGVNSPNDL 183
>gi|359479203|ref|XP_002279847.2| PREDICTED: uncharacterized protein LOC100248282 isoform 1 [Vitis
vinifera]
Length = 1107
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 130/292 (44%), Gaps = 34/292 (11%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ +G L+ WG+ + G + VS + P V G V ++CG
Sbjct: 369 VACGEYHTCAVTLSGDLYTWGDGTY-NFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCG 427
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + S+G+ +++G G LG GD +S +P+ +E+
Sbjct: 428 PWHTAVVTSSGQ--------LFTFGDGTFGVLGHGDTKSVSKPREVESLKGHR---TVIS 476
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL--PQ 179
CG +HTA ++ ++ +T+G G+ G+LGHG ++ LVP V L P
Sbjct: 477 ACGVWHTAAVVEIMVGNPSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVDPN 536
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+ V CG T ++++G V++ G P N D P + G
Sbjct: 537 FCR---VACGHSLTVALTTSGHVYTMG-------SPVYGQLGNPQADGKLPTRVEGK--L 584
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F + ++ACGA H ++T ++++WG+G +G LG G T D +P +V
Sbjct: 585 AKSFVE--EIACGAYHVAVLTSR-TEVYTWGKGANGRLGHGDTDDRNSPTLV 633
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 108/248 (43%), Gaps = 47/248 (18%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +ACG H + GE + SWG + G+LG G L PK+I++ + +
Sbjct: 314 VQNIACGGRHAALVTKQGEIF--------SWGEESGGRLGHGVDSDVLHPKLIDSLSNTN 365
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKE 176
+ V CG +HT +T L +T+G G G LGHG S VP++V
Sbjct: 366 ---IELVACGEYHTCAVT--------LSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNG 414
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSW--GMEKGLGLCPNASLTRNEAGDAISPILIS 234
+ +++ S+ CG +HT+VV+S+G ++++ G LG S+++ +++
Sbjct: 415 PLEGIHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDTKSVSKPREVESL------ 468
Query: 235 GNGPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGKTI 283
K V ACG HT V + KL++WG G G LG G
Sbjct: 469 -------KGHRTVISACGVWHTAAVVEIMVGNPSSSNCSSGKLFTWGDGDKGRLGHGDKE 521
Query: 284 DFFAPAIV 291
P V
Sbjct: 522 AKLVPTCV 529
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 31/182 (17%)
Query: 19 NAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGET 78
++G L+ WG+ D G + P+ V +VACG VAL ++G
Sbjct: 500 SSGKLFTWGDG---DKGRLGHGDKEAKLVPTCVAALVDPNFCRVACGHSLTVALTTSGHV 556
Query: 79 YKGEDLVCYSWGANNNGQLGL----GDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTAL 134
Y + G+ GQLG G +R+ K+ ++F V E+ CG++H A+
Sbjct: 557 Y--------TMGSPVYGQLGNPQADGKLPTRVEGKLAKSF-------VEEIACGAYHVAV 601
Query: 135 LTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTS 194
LT R + +T+G G NG+LGHG T P V+ L + S+ CG T+
Sbjct: 602 LTSR--------TEVYTWGKGANGRLGHGDTDDRNSPTLVEALKDK-QVKSIACGTNFTA 652
Query: 195 VV 196
+
Sbjct: 653 TI 654
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 36/158 (22%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN-------CPLPD----SSTEGGFSLVSSFTPSPV 51
C V G +++A+ +G ++ G+ P D + EG L SF
Sbjct: 536 NFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPTRVEG--KLAKSF----- 588
Query: 52 WDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKII 111
V ++ACG+ HV L S E Y +WG NG+LG GD + R P ++
Sbjct: 589 -------VEEIACGAYHVAVLTSRTEVY--------TWGKGANGRLGHGDTDDRNSPTLV 633
Query: 112 ETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
E V + CG+ TA + K + + +SMC
Sbjct: 634 EALKDKQ---VKSIACGTNFTATICLHKWVSGVDQSMC 668
>gi|430813410|emb|CCJ29231.1| unnamed protein product [Pneumocystis jirovecii]
Length = 506
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 124/290 (42%), Gaps = 35/290 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ + G +S+AI + G ++ WG+ D GFS PV + +V V
Sbjct: 202 KVVKMACGDSISVAITDKGQVYAWGSFRCSDGIL--GFSPQIKIARQPVHLKELNNIVSV 259
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR---ESRLRPKIIETFNQDSP 119
CG++HV+AL + G +SWG N Q LG R +RL + F
Sbjct: 260 VCGTDHVLALTAYGS--------VFSWG--NGQQFQLGHRVVERTRLNALVPREFGLKK- 308
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG---HGTTQSALV--PEQV 174
+ + GS+H+ ++H R +++GL + GQ G G A+V P V
Sbjct: 309 --IKAIGAGSYHSFAISHDGR--------VFSWGLNQFGQCGIESSGGEDGAVVSSPTHV 358
Query: 175 KELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM--EKGLGLCPNASLTRNEAGDAISPIL 232
+ L Y +V + G H++ ++ G++ WG LG+ P L + DA +
Sbjct: 359 QSLDPY-NIVCITGGEHHSAALTQEGELLVWGRLDANQLGI-PRTYLPQYTIYDASNRPR 416
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKT 282
P Q+ CG H + +T D +WSWG G S +G G +
Sbjct: 417 FVPIPTKVPGIPIISQIYCGTHHNLAITKDDGSVWSWGFGESYQVGQGPS 466
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 121/303 (39%), Gaps = 58/303 (19%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWG---------------NCPLPDSSTEGGFSLVSSFTP 48
I V GGM + AID G ++ WG N DS E + S P
Sbjct: 133 IVDVAVGGMHTAAIDYEGNVYTWGVNDQGALGRDTTWDVNRADLDSDDEQMLNPKDS-VP 191
Query: 49 SPVWDF-HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
V G VVK+ACG VA+ G+ Y C ++G LG + R
Sbjct: 192 GKVEGMPDGVKVVKMACGDSISVAITDKGQVYAWGSFRC------SDGILGFSPQIKIAR 245
Query: 108 -PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P ++ N + V CG+ H LT +++G G+ QLGH +
Sbjct: 246 QPVHLKELNN-----IVSVVCGTDHVLALT--------AYGSVFSWGNGQQFQLGHRVVE 292
Query: 167 ----SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN 222
+ALVP + + ++ G +H+ +S G V+SWG+ + G C S +
Sbjct: 293 RTRLNALVPREFG----LKKIKAIGAGSYHSFAISHDGRVFSWGLNQ-FGQCGIES-SGG 346
Query: 223 EAGDAISPILISGNGPHGPKFQDPVQVAC---GAAHTVLVTDDGYKLWSWGRGRSGVLGT 279
E G +S P + DP + C G H+ +T +G +L WGR + LG
Sbjct: 347 EDGAVVS-------SPTHVQSLDPYNIVCITGGEHHSAALTQEG-ELLVWGRLDANQLGI 398
Query: 280 GKT 282
+T
Sbjct: 399 PRT 401
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 96/233 (41%), Gaps = 48/233 (20%)
Query: 70 VALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES-RL--RPKIIETFNQDSPWAVYEVT 126
V ++ K + L Y +G + +LGLG + R+ RP++ D+ + +V
Sbjct: 79 VPFINEIPVLKQQKLCVYVFGTGSMSELGLGPEPTGRVVKRPRLNPLLPYDT-IGIVDVA 137
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT-----------------QSAL 169
G HTA + + E +T+G+ + G LG TT
Sbjct: 138 VGGMHTAAIDY--------EGNVYTWGVNDQGALGRDTTWDVNRADLDSDDEQMLNPKDS 189
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAG 225
VP +V+ +P V +V + CG + ++ G V++WG + LG P + R
Sbjct: 190 VPGKVEGMPDGVKVVKMACGDSISVAITDKGQVYAWGSFRCSDGILGFSPQIKIARQ--- 246
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 278
P+ H + + V V CG H + +T G ++SWG G+ LG
Sbjct: 247 ----PV-------HLKELNNIVSVVCGTDHVLALTAYG-SVFSWGNGQQFQLG 287
>gi|380803301|gb|AFE73526.1| X-linked retinitis pigmentosa GTPase regulator isoform A, partial
[Macaca mulatta]
Length = 220
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 37/235 (15%)
Query: 48 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR 107
P+ V V ACG H + G Y + G N+ GQLGLGD E R
Sbjct: 8 PTCVKALKPEKVKLAACGRNHTLVSTEGGNVY--------ATGGNDEGQLGLGDTEERNT 59
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
++I F S + +++ GS +A LT R + +G GQ+G +
Sbjct: 60 FRVISFFT--SEHKIKQLSAGSNTSAALTEDGR--------LFMWGDNSEGQIGLKNVTN 109
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAG 225
VP QV + + V +S CG +H++ V++ G+++ +G E G LGL PN L+ +
Sbjct: 110 VCVPHQVT-IGKPVSWIS--CGYYHSAFVTTDGELYMFGEPENGKLGL-PNQLLSNHRTP 165
Query: 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+S I + +QVACG HTV++T++ ++++G G+ G LG G
Sbjct: 166 QLVSEIP-----------EKVIQVACGGEHTVVLTENA--VYTFGLGQFGQLGLG 207
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 28/164 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
+I + AG S A+ G L+MWG+ +S + G V++ P G V +
Sbjct: 71 KIKQLSAGSNTSAALTEDGRLFMWGD----NSEGQIGLKNVTNVC-VPHQVTIGKPVSWI 125
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR--ESRLRPKIIETFNQDSPW 120
+CG H + + GE Y +G NG+LGL ++ + P+++ + P
Sbjct: 126 SCGYYHSAFVTTDGE--------LYMFGEPENGKLGLPNQLLSNHRTPQLV----SEIPE 173
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 164
V +V CG HT +LT E+ +TFGLG+ GQLG GT
Sbjct: 174 KVIQVACGGEHTVVLT---------ENAVYTFGLGQFGQLGLGT 208
>gi|356526548|ref|XP_003531879.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Glycine max]
Length = 474
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 132/289 (45%), Gaps = 57/289 (19%)
Query: 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWD-FHGHTVVK-VACGSEHVVALVSAGETYK 80
LW+WG +G S P W F +T+++ V+CG+ HVVAL G
Sbjct: 142 LWVWGQ-------NQG------SNLPRLFWGAFKPNTIIREVSCGAVHVVALSDEG---- 184
Query: 81 GEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETFNQ---DSPWAV--YEVTCGSFHTAL 134
+ +WG N GQLG G L+ II ++ + ++P V +V+CG +HTA
Sbjct: 185 ----LLQAWGYNECGQLGRGVTCEGLQGAHIISSYAKFLDEAPELVKIAKVSCGEYHTAA 240
Query: 135 LTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSA---LVPEQVKELPQYVYLVSVDCGLF 191
++ + +T+GLG GQLGH + Q L+P +V L +++ V CG
Sbjct: 241 ISDKGE--------VYTWGLGNMGQLGHSSLQYGDKELLPRRVVTLDG-IFIKDVACGGV 291
Query: 192 HTSVVSSAGDVWSWGMEKGLGLC--PNASLTRNEAGDAIS-----PILISGNGPHGPKFQ 244
HT ++ G +++WG + L P L A D+ + P+L+ P G +
Sbjct: 292 HTCALTQGGALYTWGGGQSGQLGLGPQTGLFSCVANDSQTFFRNIPVLVV---PKGVQL- 347
Query: 245 DPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLW 293
VACG +HT++ DG ++ WG G K + P+ V W
Sbjct: 348 ----VACGHSHTLISMSDG-RIHGWGYNNYGQAANEKCTYAWYPSPVDW 391
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 109/263 (41%), Gaps = 73/263 (27%)
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
+ VACG EH A+ S G + +WGAN+ GQLG G E R P+ ++ +
Sbjct: 63 LDVACGREHTAAIASDGSLF--------TWGANDFGQLGDGTEERRKHPEKVKQLESE-- 112
Query: 120 WAVYEVTCGSFHTALLTHRK------------------------------RPNDML---- 145
V V+CG+ +A + + +PN ++
Sbjct: 113 -FVKSVSCGAHCSACIAEPRENDGSISTRRLWVWGQNQGSNLPRLFWGAFKPNTIIREVS 171
Query: 146 -----------ESMCWTFGLGENGQLGHGTTQSALVPEQV--------KELPQYVYLVSV 186
E + +G E GQLG G T L + E P+ V + V
Sbjct: 172 CGAVHVVALSDEGLLQAWGYNECGQLGRGVTCEGLQGAHIISSYAKFLDEAPELVKIAKV 231
Query: 187 DCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 246
CG +HT+ +S G+V++WG+ +G ++SL + + + +++ +G +D
Sbjct: 232 SCGEYHTAAISDKGEVYTWGLGN-MGQLGHSSLQYGDK-ELLPRRVVTLDGIF---IKD- 285
Query: 247 VQVACGAAHTVLVTDDGYKLWSW 269
VACG HT +T G L++W
Sbjct: 286 --VACGGVHTCALTQGG-ALYTW 305
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 101/222 (45%), Gaps = 47/222 (21%)
Query: 87 YSWGANNNGQLGLGDRESRLR-PKII--ETF----NQDSPWAVYEVTCGSFHTALLTHRK 139
Y WG N +GQ G +E +LR PK + E F ++ W +V CG HTA +
Sbjct: 22 YVWGYNQSGQTGRKGKEDQLRIPKQLPPELFGCPAGTNACW--LDVACGREHTAAIAS-- 77
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS-- 197
+ +T+G + GQLG GT + PE+VK+L + ++ SV CG ++ ++
Sbjct: 78 ------DGSLFTWGANDFGQLGDGTEERRKHPEKVKQL-ESEFVKSVSCGAHCSACIAEP 130
Query: 198 -------SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
S +W WG +G ++L R G A P I +V+
Sbjct: 131 RENDGSISTRRLWVWGQNQG------SNLPRLFWG-AFKPNTII------------REVS 171
Query: 251 CGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
CGA H V ++D+G L +WG G LG G T + A ++
Sbjct: 172 CGAVHVVALSDEGL-LQAWGYNECGQLGRGVTCEGLQGAHII 212
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 85/223 (38%), Gaps = 41/223 (18%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPD----SSTEG--GFSLVSSFTPSPVWDFHGH 57
I V G + +A+ + G L WG + EG G ++SS+
Sbjct: 167 IREVSCGAVHVVALSDEGLLQAWGYNECGQLGRGVTCEGLQGAHIISSYAKFLDEAPELV 226
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLG-----LGDRESRLRPKIIE 112
+ KV+CG H A+ GE Y +WG N GQLG GD+E L P+ +
Sbjct: 227 KIAKVSCGEYHTAAISDKGEVY--------TWGLGNMGQLGHSSLQYGDKE--LLPRRVV 276
Query: 113 TFNQDSPWAVYEVTCGSFHTALLTH---------RKRPNDMLESMCWTFGLGENGQLGHG 163
T + + +V CG HT LT + L F N
Sbjct: 277 TLDGI---FIKDVACGGVHTCALTQGGALYTWGGGQSGQLGLGPQTGLFSCVAN------ 327
Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+Q+ V +P+ V LV+ CG HT + S G + WG
Sbjct: 328 DSQTFFRNIPVLVVPKGVQLVA--CGHSHTLISMSDGRIHGWG 368
>gi|255586057|ref|XP_002533695.1| Ran GTPase binding protein, putative [Ricinus communis]
gi|223526406|gb|EEF28690.1| Ran GTPase binding protein, putative [Ricinus communis]
Length = 478
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 113/261 (43%), Gaps = 54/261 (20%)
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR-PKIIETF 114
G + VA G H +AL G+ + WG GQLGLG R + P +I
Sbjct: 222 GVRITNVAAGGRHTLALSDMGQVW--------GWGYGGEGQLGLGSRIKMVSSPHLIPCI 273
Query: 115 NQD---------------SPWA---------VYEVTCGSFHTALLTHRKRPNDMLESMCW 150
+ +P A V E+ CG H+A++T
Sbjct: 274 DASASGKDRSLIVHQGNLTPSAQASTFPGSYVKEIACGGRHSAIVTDT--------GALL 325
Query: 151 TFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG 210
TFG G GQ G GTT L P V L + ++S+ GL+HT +S+ G V+++G +
Sbjct: 326 TFGWGLYGQCGQGTTNDQLRPACVPAL-SGIKVISIAAGLWHTVCISADGHVYTFGGNQF 384
Query: 211 LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG 270
L + T E +P L S + V+CGA H+ ++T+DG +++SWG
Sbjct: 385 GQLGTDTDQT--EPKQLYAPSLGS---------KHAKIVSCGARHSAVLTEDG-QVYSWG 432
Query: 271 RGRSGVLGTGKTIDFFAPAIV 291
+ G LG G +ID P+ V
Sbjct: 433 WNKYGQLGLGDSIDRNIPSQV 453
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 117/292 (40%), Gaps = 73/292 (25%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN--------------------CPLPDSSTEG-GFS 41
+I +V AGG +LA+ + G +W WG P D+S G S
Sbjct: 224 RITNVAAGGRHTLALSDMGQVWGWGYGGEGQLGLGSRIKMVSSPHLIPCIDASASGKDRS 283
Query: 42 LV---SSFTPSP-VWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQL 97
L+ + TPS F G V ++ACG H + G L+ + WG GQ
Sbjct: 284 LIVHQGNLTPSAQASTFPGSYVKEIACGGRHSAIVTDTGA------LLTFGWGLY--GQC 335
Query: 98 GLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN 157
G G +LRP + S V + G +HT ++ + +TFG +
Sbjct: 336 GQGTTNDQLRPACVPAL---SGIKVISIAAGLWHTVCIS--------ADGHVYTFGGNQF 384
Query: 158 GQLGHGTTQSALVPEQVKELPQYVYLVS--------VDCGLFHTSVVSSAGDVWSWGMEK 209
GQLG T Q+ P+ +Y S V CG H++V++ G V+SWG K
Sbjct: 385 GQLGTDTDQTE---------PKQLYAPSLGSKHAKIVSCGARHSAVLTEDGQVYSWGWNK 435
Query: 210 GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD 261
L S+ RN S + I G P +ACG HT+L+ +
Sbjct: 436 YGQLGLGDSIDRN----IPSQVPIEG--------YRPKNIACGWWHTLLLAE 475
>gi|328712024|ref|XP_001948029.2| PREDICTED: hypothetical protein LOC100158844 [Acyrthosiphon pisum]
Length = 1626
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 108/234 (46%), Gaps = 36/234 (15%)
Query: 39 GFSLVSSFTPSPV-WDFHGHT-VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQ 96
G + + TP+PV W + V++VACG H +AL + G YSWG+N+ GQ
Sbjct: 829 GPHMTKTATPNPVSWFVYIRVEVIQVACGRNHSIALTTNG---------VYSWGSNHYGQ 879
Query: 97 LGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGE 156
LG G R P ++++ + + + V+ G +H+ ++ WT+G G
Sbjct: 880 LGTGRRGQAPYPMLVDSLSNE---LIVSVSAGQYHSLAIS--------ASGQLWTWGWGV 928
Query: 157 NGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPN 216
GQLGHG P+ +K L + ++S G H+ +++S G V+++G G N
Sbjct: 929 YGQLGHGAIDDCEKPKLLKSL-ENENIISAYGGYSHSIILTSNGKVFTFG-SGSFGQLGN 986
Query: 217 ASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG 270
S T+ SP+ + G +P++ A L D +L++WG
Sbjct: 987 GSTTK-----ITSPVPVYG-------LPEPIKCIYTAYFHNLALSDVGRLYTWG 1028
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 50/223 (22%)
Query: 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDS-PWAVY------EVTCGSFHTALLTHRK 139
Y+WG ++ G LG+G P + +T + W VY +V CG H+ LT
Sbjct: 816 YTWGHSSYGCLGVG-------PHMTKTATPNPVSWFVYIRVEVIQVACGRNHSIALT--- 865
Query: 140 RPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
+ +++G GQLG G A P V L + +VSV G +H+ +S++
Sbjct: 866 ------TNGVYSWGSNHYGQLGTGRRGQAPYPMLVDSLSNEL-IVSVSAGQYHSLAISAS 918
Query: 200 GDVWSWGM----EKGLGL---CPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACG 252
G +W+WG + G G C L ++ + I IS G G
Sbjct: 919 GQLWTWGWGVYGQLGHGAIDDCEKPKLLKSLENENI----ISAYG--------------G 960
Query: 253 AAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP 295
+H++++T +G K++++G G G LG G T +P V P
Sbjct: 961 YSHSIILTSNG-KVFTFGSGSFGQLGNGSTTKITSPVPVYGLP 1002
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 111/307 (36%), Gaps = 59/307 (19%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 63
I SV AG SLAI +G LW WG G ++ P + ++
Sbjct: 902 IVSVSAGQYHSLAISASGQLWTWG---WGVYGQLGHGAIDDCEKPKLLKSLENENIISAY 958
Query: 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVY 123
G H + L S G+ + ++G+ + GQLG G P + P +
Sbjct: 959 GGYSHSIILTSNGKVF--------TFGSGSFGQLGNGSTTKITSPVPVYGL----PEPIK 1006
Query: 124 EVTCGSFHTALLT-----------------HRKRPNDMLESMCWTFG-LGENGQLGHGTT 165
+ FH L+ H + + G ++ ++ T
Sbjct: 1007 CIYTAYFHNLALSDVGRLYTWGSSPQVLRFHAQSQKRARNQLVLNEGDQADDAEIDALTA 1066
Query: 166 QSALV---PEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM--EKGLG-------L 213
L+ P V + + CG H++V+S+ G +++WG+ + LG L
Sbjct: 1067 DDGLLHLSPTLVDTSHISGDIFQMCCGCHHSAVISTTGQLYTWGLNLDGQLGVSGIRERL 1126
Query: 214 CPNASLTRNEAGDAISP--ILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGR 271
P +L + P +++ + G + +V CGA T L D KLW WG
Sbjct: 1127 VPTVTL--------VGPPSVIVDSSSTSGSLIK---EVRCGADFT-LALDAANKLWGWGS 1174
Query: 272 GRSGVLG 278
G LG
Sbjct: 1175 NHEGQLG 1181
>gi|326496164|dbj|BAJ90703.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 907
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 122/290 (42%), Gaps = 44/290 (15%)
Query: 18 DNAGALWMWGNCPLPDSSTEGGFSLVSS------FTPSPVWDFHGHTVVKVACGSEHVVA 71
D+ G +++WG +S+ +++ S P P+ V V CG H
Sbjct: 32 DSLGDVYVWGEVVCDNSARTSSDTVIRSTGKTDFLLPKPLESNLVLDVYHVDCGVRHASL 91
Query: 72 LVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFH 131
+ GE + +WG ++ G+LG G RE + P+++E+ + + V CG FH
Sbjct: 92 VTRNGEVF--------TWGEDSGGRLGHGTREDSVHPRLVESLAASN---IDFVACGEFH 140
Query: 132 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF 191
T +T E W G G LGHGT +P ++ + + + V CG +
Sbjct: 141 TCAVT------TTGELYTWGDGTHNVGLLGHGTDVGHWIPRRISGPLEGLQIAYVSCGTW 194
Query: 192 HTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVAC 251
HT++++S G ++++G + G+ + ++ + +SG + VAC
Sbjct: 195 HTALITSMGQLFTFG-DGSFGVLGHGNVKSISCPREVES--LSG--------LKTIAVAC 243
Query: 252 GAAHT-----VLVTDDGY-----KLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G HT V+VT KL++WG G LG G P V
Sbjct: 244 GVWHTAAIVEVIVTQSSATVSAGKLFTWGDGDKHRLGHGDKEARLKPTCV 293
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 107/262 (40%), Gaps = 34/262 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
QI V G + I + G L+ +G+ G ++ S P V G + V
Sbjct: 185 QIAYVSCGTWHTALITSMGQLFTFGDGSF---GVLGHGNVKSISCPREVESLSGLKTIAV 241
Query: 63 ACGSEHVVALVSAGETYKGEDLVC---YSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
ACG H A+V T + ++WG + +LG GD+E+RL+P + +
Sbjct: 242 ACGVWHTAAIVEVIVTQSSATVSAGKLFTWGDGDKHRLGHGDKEARLKPTCVASLID--- 298
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
+ Y V CG T LT WT G GQLG+ + P V++
Sbjct: 299 YDFYRVACGHSLTVGLT--------TSGKVWTMGNSVYGQLGNPNSDGR--PCLVEDKIA 348
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPH 239
+++ + CG +H +V++S +V++WG KG N L + D P +
Sbjct: 349 SEHVLQIACGSYHVAVLTSRSEVFTWG--KG----ANGRLGHGDVEDRKVPTTVEA---- 398
Query: 240 GPKFQDPV--QVACGAAHTVLV 259
+D +ACGA T +
Sbjct: 399 ---LRDRAVRHIACGANFTAAI 417
>gi|301114615|ref|XP_002999077.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262111171|gb|EEY69223.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 529
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 123/286 (43%), Gaps = 38/286 (13%)
Query: 14 SLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK-VACGSEHVVAL 72
S+AI G WGN D G S +TP + V+ +ACG H +AL
Sbjct: 218 SIAITAKGDAMAWGN---GDKYRLGHGSSTKEYTPRMIEHLRLKGRVRDLACGLGHTLAL 274
Query: 73 VSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHT 132
+ +GE + +WG +NG+LGLGD R E+ + P + CG+ H+
Sbjct: 275 MESGELF--------AWGNGSNGRLGLGDTNDR-----PESCSTSVPVRFRHIFCGASHS 321
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP---QYVYLVSVDCG 189
L+ R +T+G GQ GHG T ++++ + + G
Sbjct: 322 LGLSWDGRA--------YTWGKNNQGQCGHGHTNDQWTIQEIESFEDGEEAECVTYAAGG 373
Query: 190 LFHTSVVSSAGDVWSWGM----EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQD 245
HT +++G V+S G + G+ P L + + P LI ++
Sbjct: 374 WEHTLFSTASGRVYSCGCGYKDSRRAGIPP--VLGHGDCDRRLKPTLIQ---SLEDAREE 428
Query: 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
V+VACG H++ V+ G K+++WG G +G LG G F P +V
Sbjct: 429 IVKVACGWDHSLAVSASG-KVYTWGSGTNGKLGHGDEESFDTPTLV 473
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 19/116 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+VKVACG +H +A+ ++G+ Y +WG+ NG+LG GD ES P ++ T
Sbjct: 429 IVKVACGWDHSLAVSASGKVY--------TWGSGTNGKLGHGDEESFDTPTLVRTMEGRH 480
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQV 174
V + G HT LT+ + W+ G G++G+LGHG +Q+ P ++
Sbjct: 481 ---VKDAKAGCEHTVFLTY--------DHELWSCGQGDSGRLGHGDSQTRKRPTKI 525
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 22/155 (14%)
Query: 133 ALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFH 192
+L TH ++M W G G+ +LGHG++ P ++ L + + CGL H
Sbjct: 213 SLSTHSIAITAKGDAMAW--GNGDKYRLGHGSSTKEYTPRMIEHLRLKGRVRDLACGLGH 270
Query: 193 TSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ---V 249
T + +G++++WG N S R GD + + P PV+ +
Sbjct: 271 TLALMESGELFAWG---------NGSNGRLGLGD-------TNDRPESCSTSVPVRFRHI 314
Query: 250 ACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
CGA+H++ ++ DG + ++WG+ G G G T D
Sbjct: 315 FCGASHSLGLSWDG-RAYTWGKNNQGQCGHGHTND 348
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 23/145 (15%)
Query: 151 TFGLGENGQLGHG-----------TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199
+FG G++G+LGHG T++ LVP + ++ +D H+ +++
Sbjct: 166 SFGKGDHGKLGHGQCVHVSCQEGNCTENKLVPTMIAATRDILFR-RIDSLSTHSIAITAK 224
Query: 200 GDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLV 259
GD +WG L + S T+ I + + G + +D +ACG HT+ +
Sbjct: 225 GDAMAWGNGDKYRL-GHGSSTKEYTPRMIEHLRLKG------RVRD---LACGLGHTLAL 274
Query: 260 TDDGYKLWSWGRGRSGVLGTGKTID 284
+ G +L++WG G +G LG G T D
Sbjct: 275 MESG-ELFAWGNGSNGRLGLGDTND 298
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG--GFSLVSSF-TPSPVWDFHGHTV 59
+I V G SLA+ +G ++ WG S T G G SF TP+ V G V
Sbjct: 428 EIVKVACGWDHSLAVSASGKVYTWG------SGTNGKLGHGDEESFDTPTLVRTMEGRHV 481
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETF 114
G EH V L TY E +S G ++G+LG GD ++R RP I F
Sbjct: 482 KDAKAGCEHTVFL-----TYDHE---LWSCGQGDSGRLGHGDSQTRKRPTKIGLF 528
>gi|260791114|ref|XP_002590585.1| hypothetical protein BRAFLDRAFT_123620 [Branchiostoma floridae]
gi|229275780|gb|EEN46596.1| hypothetical protein BRAFLDRAFT_123620 [Branchiostoma floridae]
Length = 710
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 38/228 (16%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
+ VACG EH ALV+ E+ Y++G+N+ GQLGLG ++ +P +++ +
Sbjct: 37 ICAVACGDEHT-ALVT-------ENGRLYTFGSNDWGQLGLGHTKTASKPSCVKSLKHEK 88
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
V CG HT + T + + +G G GQLG G + + +
Sbjct: 89 ---AKLVACGRSHTLIATG--------DGKVYVWGGGSEGQLGLGEDTTECTEPTLLDFD 137
Query: 179 QYVYLVSVDCGLFHTSVVSSAGDVWSWG-MEKG-LGLCPNASLTRNEAGDAISPILISGN 236
+SV CG +HT+VV+ G+++++G E G LGL N+ L ++ +P ++G
Sbjct: 138 SKA--ISVSCGYYHTAVVTEDGNLYTFGETEYGKLGLN-NSDLDSSD-----TPQKVTG- 188
Query: 237 GPHGPKFQDPVQ-VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI 283
++ V+ V CG HT + + G ++++G G SG LG G ++
Sbjct: 189 ------IKEKVKFVVCGGGHTTAIAESGA-VYTFGNGASGQLGHGNSL 229
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 17/144 (11%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG-GFSLVSSFTPSPVWDFHGHTVVKVACG 65
V GG + AI +GA++ +GN S G G SL+ S TP V F +CG
Sbjct: 196 VVCGGGHTTAIAESGAVYTFGNGA---SGQLGHGNSLLESPTPHRVERFRDADCKHASCG 252
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE--SRLRPKIIETFNQDSPWAVY 123
E+ A++ T KG Y++G +G+LGLGD ++ RP + FN+ + V
Sbjct: 253 -ENFTAVI----TGKGH---LYTFGDGRHGKLGLGDESFTNQFRPFKVARFNK---FQVQ 301
Query: 124 EVTCGSFHTALLTHRKRPNDMLES 147
V CG H ++ ++ N + S
Sbjct: 302 WVACGGCHMMVIASPRQQNGEISS 325
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 101/258 (39%), Gaps = 54/258 (20%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGG------FSLVSSFTPSPVWDFH 55
S+ SV G + + G L+ +G TE G L SS TP V
Sbjct: 138 SKAISVSCGYYHTAVVTEDGNLYTFGE-------TEYGKLGLNNSDLDSSDTPQKVTGIK 190
Query: 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR--ESRLRPKIIET 113
V V CG H A+ +G Y++G +GQLG G+ ES P +E
Sbjct: 191 -EKVKFVVCGGGHTTAIAESG--------AVYTFGNGASGQLGHGNSLLESPT-PHRVER 240
Query: 114 FNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ--SALVP 171
F +CG TA++T + +TFG G +G+LG G + P
Sbjct: 241 FRD---ADCKHASCGENFTAVITGK--------GHLYTFGDGRHGKLGLGDESFTNQFRP 289
Query: 172 EQVKELPQYVYLVSVDCGLFHTSVVSSA----GDVWSWGM-----------EKGLGLCPN 216
+V ++ + V CG H V++S G++ S +K L L
Sbjct: 290 FKVARFNKF-QVQWVACGGCHMMVIASPRQQNGEISSESSDEDPLMESISGQKSLNLSKI 348
Query: 217 ASLTRNEAGDAISPILIS 234
+S + E D+ SP+L S
Sbjct: 349 SSENKEEGEDSQSPLLAS 366
>gi|255572207|ref|XP_002527043.1| Ran GTPase binding protein, putative [Ricinus communis]
gi|223533605|gb|EEF35343.1| Ran GTPase binding protein, putative [Ricinus communis]
Length = 1100
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 130/290 (44%), Gaps = 30/290 (10%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPV-WDFHGHTVVKVACG 65
V G + A+ +G L+ WG+ + G + VS + P V G V ++CG
Sbjct: 361 VACGEYHTCAVTLSGDLYTWGDGTY-NFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCG 419
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + S+G+ +++G G LG GDR+S P+ +E+
Sbjct: 420 PWHTAVVTSSGQ--------LFTFGDGTFGVLGHGDRKSVSIPREVESLKG---LRTVRA 468
Query: 126 TCGSFHTA----LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYV 181
CG +HTA ++ ++ +T+G G+ G+LGHG ++ LVP V L +
Sbjct: 469 ACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPN 528
Query: 182 YLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241
+ V CG T ++++G V++ G P N D P + G
Sbjct: 529 F-CQVACGHSLTVALTTSGHVYTMG-------SPVYGQLGNPQADGKLPNRVEGR--LSK 578
Query: 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
F + ++ACGA H ++T ++++WG+G +G LG G T D P++V
Sbjct: 579 SFVE--EIACGAYHVAVLTSK-TEVYTWGKGANGRLGHGDTDDRNFPSLV 625
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 105/246 (42%), Gaps = 43/246 (17%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V +ACG H + GE + SWG + G+LG G L PK+I++ S
Sbjct: 306 VQNIACGGRHAALVTKQGEVF--------SWGEESGGRLGHGVDSDVLHPKLIDSL---S 354
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGEN--GQLGHGTTQSALVPEQVKE 176
+ V CG +HT +T L +T+G G G LGHG S VP++V
Sbjct: 355 NINIELVACGEYHTCAVT--------LSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNG 406
Query: 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGN 236
+ +++ S+ CG +HT+VV+S+G ++++G + G+ + + +
Sbjct: 407 PLEGIHVSSISCGPWHTAVVTSSGQLFTFG-DGTFGVLGHGDRKSVSIPREVESL----- 460
Query: 237 GPHGPKFQDPVQVACGAAHTVLVTD-----------DGYKLWSWGRGRSGVLGTGKTIDF 285
K V+ ACG HT V + KL++WG G G LG G
Sbjct: 461 -----KGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAK 515
Query: 286 FAPAIV 291
P V
Sbjct: 516 LVPTCV 521
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 108/270 (40%), Gaps = 48/270 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLV------SSFTPSPVWDFHG 56
+ S+ G + + ++G L+ +G +G F ++ S P V G
Sbjct: 412 HVSSISCGPWHTAVVTSSGQLFTFG---------DGTFGVLGHGDRKSVSIPREVESLKG 462
Query: 57 HTVVKVACGSEHVVALVSAGETYKGEDLV-------CYSWGANNNGQLGLGDRESRLRPK 109
V+ ACG H A+V E G ++WG + G+LG GD+E++L P
Sbjct: 463 LRTVRAACGVWHTAAVV---EVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPT 519
Query: 110 IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
+ + + +V CG T LT +T G GQLG+ L
Sbjct: 520 CVAALVEPN---FCQVACGHSLTVALT--------TSGHVYTMGSPVYGQLGNPQADGKL 568
Query: 170 VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAIS 229
P +V+ ++ + CG +H +V++S +V++WG KG N L + D
Sbjct: 569 -PNRVEGRLSKSFVEEIACGAYHVAVLTSKTEVYTWG--KG----ANGRLGHGDTDDRNF 621
Query: 230 PILISGNGPHGPKFQDPVQVACGAAHTVLV 259
P L+ K + +ACG T +
Sbjct: 622 PSLV-----EALKDKQVKSIACGTNFTAAI 646
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 22/151 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
C V G +++A+ +G ++ G+ L + +G P+ V +
Sbjct: 528 NFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKL-------PNRVEGRLSKSF 580
Query: 60 VK-VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 118
V+ +ACG+ HV L S E Y +WG NG+LG GD + R P ++E
Sbjct: 581 VEEIACGAYHVAVLTSKTEVY--------TWGKGANGRLGHGDTDDRNFPSLVEALKDKQ 632
Query: 119 PWAVYEVTCGSFHTALLTHRKRPNDMLESMC 149
V + CG+ TA + K + + +SMC
Sbjct: 633 ---VKSIACGTNFTAAICLHKWVSGIDQSMC 660
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 19/138 (13%)
Query: 161 GHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG--LGLCPNAS 218
G G +L+P+ + E + + ++ CG H ++V+ G+V+SWG E G LG ++
Sbjct: 285 GFGVKLDSLLPKAL-ESTVVLDVQNIACGGRHAALVTKQGEVFSWGEESGGRLGHGVDSD 343
Query: 219 LTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRG--RSGV 276
+ + D++S I I VACG HT VT G L++WG G G+
Sbjct: 344 VLHPKLIDSLSNINIE-------------LVACGEYHTCAVTLSG-DLYTWGDGTYNFGL 389
Query: 277 LGTGKTIDFFAPAIVLWP 294
LG G + + P V P
Sbjct: 390 LGHGNEVSHWVPKRVNGP 407
>gi|326664251|ref|XP_688463.5| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 [Danio rerio]
Length = 992
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 32/247 (12%)
Query: 49 SPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR- 107
SP+ V+++ACG +H +AL + G+ + WG N GQLGL ++ +
Sbjct: 110 SPLKGLENRQVIQIACGDQHSMALTNDGQ--------LFVWGENALGQLGLRKEQAGTQS 161
Query: 108 PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 167
P+ +++ V +++ G H+ +L+ L + + +G GQLG G T
Sbjct: 162 PRHLQSL---CGIPVAQISAGGNHSFVLS--------LSGVVFGWGGNSAGQLGLGDTTD 210
Query: 168 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDA 227
VP V L + +VS+ CG HT+ ++ G V+++G G G L N D
Sbjct: 211 RFVPTVVNSLKRK-KIVSISCGGEHTAALAKGGTVFTFG-SGGFG-----QLGHNSFKDE 263
Query: 228 ISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
P L++ G K QV CG HT++ T ++S+G G G LG G+ +
Sbjct: 264 HHPRLVAE--LWGSKVS---QVTCGRNHTLVSTASPKLIYSFGCGMQGQLGNGEQVKQSV 318
Query: 288 PAIVLWP 294
P V P
Sbjct: 319 PLPVDQP 325
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 95/215 (44%), Gaps = 29/215 (13%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSP--VWDFHGHTVV 60
Q+ + G S+A+ N G L++WG L + G + T SP + G V
Sbjct: 119 QVIQIACGDQHSMALTNDGQLFVWGENAL----GQLGLRKEQAGTQSPRHLQSLCGIPVA 174
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
+++ G H L +G V + WG N+ GQLGLGD R P ++ + +
Sbjct: 175 QISAGGNHSFVLSLSG--------VVFGWGGNSAGQLGLGDTTDRFVPTVVNSLKRKK-- 224
Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
+ ++CG HTA L +TFG G GQLGH + + P V EL
Sbjct: 225 -IVSISCGGEHTAALAK--------GGTVFTFGSGGFGQLGHNSFKDEHHPRLVAEL-WG 274
Query: 181 VYLVSVDCGLFHTSV-VSSAGDVWSW--GMEKGLG 212
+ V CG HT V +S ++S+ GM+ LG
Sbjct: 275 SKVSQVTCGRNHTLVSTASPKLIYSFGCGMQGQLG 309
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 27/180 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF-SLVSSFTPSPVWDFHGHTVVKV 62
+ + AGG S + +G ++ WG +S+ + G F P+ V +V +
Sbjct: 173 VAQISAGGNHSFVLSLSGVVFGWGG----NSAGQLGLGDTTDRFVPTVVNSLKRKKIVSI 228
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA- 121
+CG EH AL G +++G+ GQLG + P+++ W
Sbjct: 229 SCGGEHTAALAKGG--------TVFTFGSGGFGQLGHNSFKDEHHPRLVAEL-----WGS 275
Query: 122 -VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
V +VTCG HT + T + + ++FG G GQLG+G VP V + +Y
Sbjct: 276 KVSQVTCGRNHTLVSTASPK-------LIYSFGCGMQGQLGNGEQVKQSVPLPVDQPTEY 328
>gi|348683969|gb|EGZ23784.1| hypothetical protein PHYSODRAFT_311023 [Phytophthora sojae]
Length = 625
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 15/162 (9%)
Query: 46 FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESR 105
+P+ + G VV V+ G EH V + GET+ + YSWG NG+LG D +R
Sbjct: 339 LSPARITSLDGLNVVHVSAGDEHSVVMT--GETFFNRQV--YSWGLGKNGRLGHNDELTR 394
Query: 106 LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMC-WTFGLGENGQLGHGT 164
L+P + F V + G H + +M +C W++G G GQLGH
Sbjct: 395 LKPTRVNCFRGRK---VITLVAGGAHNLATS------EMPRGVCVWSWGAGSYGQLGHRD 445
Query: 165 TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
T L+P V E+ +Y + +D G H+ +S + +W WG
Sbjct: 446 TWDTLIPRSVDEI-RYESIRYIDAGQRHSLAISESKQLWLWG 486
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 95/210 (45%), Gaps = 29/210 (13%)
Query: 88 SWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLES 147
SWG + G LG GD ES P++I+ FN V V+ G H +LT L+
Sbjct: 269 SWGRGDYGVLGHGDTESSATPRVIKIFNS---MRVTCVSAGLHHVLVLTE-------LDG 318
Query: 148 MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAG----DVW 203
+ + FG G NG+LG G T L P ++ L + +V V G H+ V++ V+
Sbjct: 319 V-YAFGDGSNGKLGLGDTNPRLSPARITSL-DGLNVVHVSAGDEHSVVMTGETFFNRQVY 376
Query: 204 SWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTD-- 261
SWG+ K L N LTR + P + N G K + + G AH + ++
Sbjct: 377 SWGLGKNGRLGHNDELTR------LKPTRV--NCFRGRKV---ITLVAGGAHNLATSEMP 425
Query: 262 DGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G +WSWG G G LG T D P V
Sbjct: 426 RGVCVWSWGAGSYGQLGHRDTWDTLIPRSV 455
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 112/267 (41%), Gaps = 35/267 (13%)
Query: 11 GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVV 70
M + A++N L WG D G SS TP + F+ V V+ G HV+
Sbjct: 258 AMNAAAVNN---LVSWGR---GDYGVLGHGDTESSATPRVIKIFNSMRVTCVSAGLHHVL 311
Query: 71 ALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF 130
L Y ++G +NG+LGLGD RL P I + + V V+ G
Sbjct: 312 VLTELDGVY--------AFGDGSNGKLGLGDTNPRLSPARITSLDG---LNVVHVSAGDE 360
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL--PQYVYLVSVDC 188
H+ ++T N + +++GLG+NG+LGH + L P +V + + LV+
Sbjct: 361 HSVVMTGETFFNRQV----YSWGLGKNGRLGHNDELTRLKPTRVNCFRGRKVITLVAGGA 416
Query: 189 GLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ 248
TS + VWSWG L + D + P + +++
Sbjct: 417 HNLATSEMPRGVCVWSWGAGS------YGQLGHRDTWDTLIPRSVD-----EIRYESIRY 465
Query: 249 VACGAAHTVLVTDDGYKLWSWGRGRSG 275
+ G H++ +++ +LW WG+G G
Sbjct: 466 IDAGQRHSLAISES-KQLWLWGQGIHG 491
>gi|226495691|ref|NP_001141854.1| uncharacterized protein LOC100273996 [Zea mays]
gi|194706180|gb|ACF87174.1| unknown [Zea mays]
Length = 391
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 134/315 (42%), Gaps = 55/315 (17%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWG-----NCPLPDSSTEGGFSLVSSFTPSPVWDFHGH 57
+I GG LA+D+ G + WG C E G + P+P
Sbjct: 95 KIVQAAIGGWHCLAVDDNGHAYAWGGNEYGQCGEEPERKEDGTRALRRDIPTPQRCAPKL 154
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V +VA G H V L G + +WG GD + P ++ +
Sbjct: 155 KVRQVAAGGTHSVVLTQEGHVW--------TWGQ----PWPPGDIKQISTPVRVQGLEK- 201
Query: 118 SPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
V + G+FH LT + + W +G E GQLG G TQ P +V+ L
Sbjct: 202 ----VRVIAVGAFHNLALTE--------DGILWAWGNNEYGQLGTGDTQPRSHPIRVEGL 249
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPI---L 232
+ LV + G +H++ ++ G+V++WG E G LG + S + P+ L
Sbjct: 250 SD-LSLVDIAAGGWHSTALTIQGEVYAWGRGEHGRLGFGDDKS-------SRMVPLKVEL 301
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPA--- 289
++G +D VQV+CG H+V +T DG +++S+GRG G LG G+ + P
Sbjct: 302 LAG--------EDIVQVSCGGTHSVALTRDG-RMFSYGRGDHGRLGYGRKLTTGQPMGVD 352
Query: 290 IVLWPPLTEEFKQDE 304
I L PP T + +
Sbjct: 353 IDLPPPKTRSSRDGQ 367
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 88/207 (42%), Gaps = 33/207 (15%)
Query: 1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
+ ++ + G +LA+ G LW WGN T G + S P V ++V
Sbjct: 199 LEKVRVIAVGAFHNLALTEDGILWAWGNNEYGQLGT--GDTQPRSH-PIRVEGLSDLSLV 255
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG-DRESRLRPKIIETFNQDSP 119
+A G H AL GE Y+WG +G+LG G D+ SR+ P +E +
Sbjct: 256 DIAAGGWHSTALTIQGEV--------YAWGRGEHGRLGFGDDKSSRMVPLKVELLAGED- 306
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVK-ELP 178
+ +V+CG H+ LT R +++G G++G+LG+G + P V +LP
Sbjct: 307 --IVQVSCGGTHSVALTRDGR--------MFSYGRGDHGRLGYGRKLTTGQPMGVDIDLP 356
Query: 179 QYVYLVSVD---------CGLFHTSVV 196
S D CG HT +
Sbjct: 357 PPKTRSSRDGQWQAKYVACGGRHTLAI 383
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 88 SWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLES 147
+WG+ +GQLG+G E + +E +AV V GS ++ + R
Sbjct: 12 AWGSGEDGQLGMGGNEEKDWAHCVEALGS---YAVTAVVAGSRNSLAICEDGR------- 61
Query: 148 MCWTFGLGENGQLGH-GTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 206
+T+G + G LGH T++ P V L + +V G +H V G ++WG
Sbjct: 62 -LFTWGWNQRGTLGHPPKTKTESSPGPVHALAG-LKIVQAAIGGWHCLAVDDNGHAYAWG 119
Query: 207 MEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKL 266
+ G C R E G I PK + QVA G H+V++T +G+ +
Sbjct: 120 GNE-YGQC-GEEPERKEDGTRALRRDIPTPQRCAPKLK-VRQVAAGGTHSVVLTQEGH-V 175
Query: 267 WSWGR 271
W+WG+
Sbjct: 176 WTWGQ 180
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,261,694,500
Number of Sequences: 23463169
Number of extensions: 322149439
Number of successful extensions: 819400
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 4202
Number of HSP's that attempted gapping in prelim test: 748070
Number of HSP's gapped (non-prelim): 27051
length of query: 434
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 289
effective length of database: 8,957,035,862
effective search space: 2588583364118
effective search space used: 2588583364118
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 78 (34.7 bits)