BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013924
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 141/338 (41%), Gaps = 80/338 (23%)
Query: 3 QICSVKAGGMMSLAIDNAGA---LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
QI SV G ++A +G W WG D G + FTP P+ HG +
Sbjct: 59 QIVSVTCGADHTVAYSQSGXEVYSWGWG-----DFGRLGHGNSSDLFTPLPIKALHGIRI 113
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++ACG H +A+ GE SWG N NGQLGLGD E L P+ I+ F
Sbjct: 114 KQIACGDSHCLAVTXEGEVQ--------SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR- 164
Query: 120 WAVYEVTCGSFHTALLTH------------------------------------------ 137
+ V G+ HTA +T
Sbjct: 165 --IKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVAC 222
Query: 138 --RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
R + +T+G + GQLGHG + L+P +++ L ++ + G HT
Sbjct: 223 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSN-SFISQISGGARHTXA 281
Query: 196 VSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++S G ++ WG K +G+ N D SP+ + P Q VQV+CG
Sbjct: 282 LTSDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV-----RFPDDQKVVQVSCGW 328
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ VT+ +++WGRG +G LG G+++D P I+
Sbjct: 329 RHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 365
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 112/244 (45%), Gaps = 35/244 (14%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
+P+ + GH +V V CG++H VA +G YSWG + G+LG G+
Sbjct: 48 SPTQLSALDGHQIVSVTCGADHTVAYSQSGXE-------VYSWGWGDFGRLGHGNSSDLF 100
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P I+ + + ++ CG H +T E ++G +NGQLG G T+
Sbjct: 101 TPLPIKALHGIR---IKQIACGDSHCLAVT--------XEGEVQSWGRNQNGQLGLGDTE 149
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEA 224
+LVP++++ + + + V G HT+ V+ GD+ W WG LGL +
Sbjct: 150 DSLVPQKIQAF-EGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL--------GDR 200
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
D + P ++ G G K VACG HT+ V+ G L+++G + G LG G D
Sbjct: 201 TDRLVPERVTSTG--GEKXS---XVACGWRHTISVSYSG-ALYTYGWSKYGQLGHGDLED 254
Query: 285 FFAP 288
P
Sbjct: 255 HLIP 258
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILI 233
V P+ V ++S G H+ + S V SWG + + L +A D SP +
Sbjct: 1 VTAPPRKVLIISA--GASHSVALLSGDIVCSWGRGE------DGQLGHGDAEDRPSPTQL 52
Query: 234 SGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
S H V V CGA HTV + G +++SWG G G LG G + D F P
Sbjct: 53 SALDGH-----QIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTP 102
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 22/171 (12%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
V G ++++ +GAL+ +G G L P + + +++ G+
Sbjct: 220 VACGWRHTISVSYSGALYTYG---WSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGA 276
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126
H AL S G+ Y WG N GQ+G+G+ + P + F D V +V+
Sbjct: 277 RHTXALTSDGK--------LYGWGWNKFGQVGVGNNLDQCSPVQVR-FPDDQK--VVQVS 325
Query: 127 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
CG HT +T R + +G G NGQLG G + P+ ++ L
Sbjct: 326 CGWRHTLAVTERNN--------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 368
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 11/116 (9%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S I + G + A+ + G L+ WG S P V VV+
Sbjct: 267 SFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCS---PVQVRFPDDQKVVQ 323
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+CG H +A+ E ++WG NGQLG+G+ R PKIIE + D
Sbjct: 324 VSCGWRHTLAVT--------ERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVD 371
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 141/338 (41%), Gaps = 80/338 (23%)
Query: 3 QICSVKAGGMMSLAIDNAGA---LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
QI SV G ++A +G W WG D G + FTP P+ HG +
Sbjct: 57 QIVSVTCGADHTVAYSQSGMEVYSWGWG-----DFGRLGHGNSSDLFTPLPIKALHGIRI 111
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++ACG H +A+ GE SWG N NGQLGLGD E L P+ I+ F
Sbjct: 112 KQIACGDSHCLAVTMEGEVQ--------SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR- 162
Query: 120 WAVYEVTCGSFHTALLTH------------------------------------------ 137
+ V G+ HTA +T
Sbjct: 163 --IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC 220
Query: 138 --RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
R + +T+G + GQLGHG + L+P +++ L ++ + G HT
Sbjct: 221 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSN-SFISQISGGFRHTMA 279
Query: 196 VSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++S G ++ WG K +G+ N D SP+ + P Q VQV+CG
Sbjct: 280 LTSDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV-----RFPDDQKVVQVSCGW 326
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ VT+ +++WGRG +G LG G+++D P I+
Sbjct: 327 RHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 363
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 35/244 (14%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
+P+ + GH +V V CG++H VA +G + YSWG + G+LG G+
Sbjct: 46 SPTQLSALDGHQIVSVTCGADHTVAYSQSG-------MEVYSWGWGDFGRLGHGNSSDLF 98
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P I+ + + ++ CG H +T +E ++G +NGQLG G T+
Sbjct: 99 TPLPIKALHGIR---IKQIACGDSHCLAVT--------MEGEVQSWGRNQNGQLGLGDTE 147
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEA 224
+LVP++++ + + + V G HT+ V+ GD+ W WG LGL +
Sbjct: 148 DSLVPQKIQAF-EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL--------GDR 198
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
D + P ++ G G K VACG HT+ V+ G L+++G + G LG G D
Sbjct: 199 TDRLVPERVTSTG--GEKMS---MVACGWRHTISVSYSG-ALYTYGWSKYGQLGHGDLED 252
Query: 285 FFAP 288
P
Sbjct: 253 HLIP 256
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P+ V ++S G H+ + S V SWG + + L +A D SP +S
Sbjct: 3 PRKVLIISA--GASHSVALLSGDIVCSWGRGE------DGQLGHGDAEDRPSPTQLSALD 54
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
H V V CGA HTV + G +++SWG G G LG G + D F P
Sbjct: 55 GH-----QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTP 100
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 22/175 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G ++++ +GAL+ +G G L P + + ++
Sbjct: 214 KMSMVACGWRHTISVSYSGALYTYG---WSKYGQLGHGDLEDHLIPHKLEALSNSFISQI 270
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL S G+ Y WG N GQ+G+G+ + P + F D V
Sbjct: 271 SGGFRHTMALTSDGK--------LYGWGWNKFGQVGVGNNLDQCSPVQVR-FPDDQK--V 319
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+V+CG HT +T R + +G G NGQLG G + P+ ++ L
Sbjct: 320 VQVSCGWRHTLAVTERNN--------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S I + G ++A+ + G L+ WG S P V VV+
Sbjct: 265 SFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS---PVQVRFPDDQKVVQ 321
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+CG H +A+ E ++WG NGQLG+G+ R PKIIE + D
Sbjct: 322 VSCGWRHTLAVT--------ERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVD 369
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 143/338 (42%), Gaps = 80/338 (23%)
Query: 3 QICSVKAGGMMSLAIDNAGA---LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
QI SV G ++A +G W WG D G + FTP P+ HG +
Sbjct: 69 QIVSVTCGADHTVAYSQSGMEVYSWGWG-----DFGRLGHGNSSDLFTPLPIKALHGIRI 123
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++ACG H +A+ GE SWG N NGQLGLGD E L P+ I+ F
Sbjct: 124 KQIACGDSHCLAVTMEGEVQ--------SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR- 174
Query: 120 WAVYEVTCGSFHTALLTH----------------------RKRPNDMLES---------- 147
+ V G+ HTA +T R P + +
Sbjct: 175 --IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC 232
Query: 148 ------------MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
+T+G + GQLGHG + L+P +++ L ++ + G HT
Sbjct: 233 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNS-FISQISGGWRHTMA 291
Query: 196 VSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++S G ++ WG K +G+ N D SP+ + P Q VQV+CG
Sbjct: 292 LTSDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV-----RFPDDQKVVQVSCGW 338
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ VT+ +++WGRG +G LG G+++D P I+
Sbjct: 339 RHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 375
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 35/244 (14%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
+P+ + GH +V V CG++H VA +G + YSWG + G+LG G+
Sbjct: 58 SPTQLSALDGHQIVSVTCGADHTVAYSQSG-------MEVYSWGWGDFGRLGHGNSSDLF 110
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P I+ + + ++ CG H +T +E ++G +NGQLG G T+
Sbjct: 111 TPLPIKALHGIR---IKQIACGDSHCLAVT--------MEGEVQSWGRNQNGQLGLGDTE 159
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEA 224
+LVP++++ + + + V G HT+ V+ GD+ W WG LGL +
Sbjct: 160 DSLVPQKIQAF-EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL--------GDR 210
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
D + P ++ G G K VACG HT+ V+ G L+++G + G LG G D
Sbjct: 211 TDRLVPERVTSTG--GEKMS---MVACGWRHTISVSYSG-ALYTYGWSKYGQLGHGDLED 264
Query: 285 FFAP 288
P
Sbjct: 265 HLIP 268
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 169 LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
+ ++V P+ V ++S G H+ + S V SWG + + L +A D
Sbjct: 6 MAADEVTAPPRKVLIIS--AGASHSVALLSGDIVCSWGRGE------DGQLGHGDAEDRP 57
Query: 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
SP +S H V V CGA HTV + G +++SWG G G LG G + D F P
Sbjct: 58 SPTQLSALDGH-----QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTP 112
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 22/175 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G ++++ +GAL+ +G G L P + + ++
Sbjct: 226 KMSMVACGWRHTISVSYSGALYTYG---WSKYGQLGHGDLEDHLIPHKLEALSNSFISQI 282
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL S G+ Y WG N GQ+G+G+ + P + F D V
Sbjct: 283 SGGWRHTMALTSDGK--------LYGWGWNKFGQVGVGNNLDQCSPVQVR-FPDDQK--V 331
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+V+CG HT +T R + +G G NGQLG G + P+ ++ L
Sbjct: 332 VQVSCGWRHTLAVTERNN--------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 378
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S I + G ++A+ + G L+ WG S P V VV+
Sbjct: 277 SFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS---PVQVRFPDDQKVVQ 333
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+CG H +A+ E ++WG NGQLG+G+ R PKIIE + D
Sbjct: 334 VSCGWRHTLAVT--------ERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVD 381
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 141/338 (41%), Gaps = 80/338 (23%)
Query: 3 QICSVKAGGMMSLAIDNAGA---LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
QI SV G ++A +G W WG D G + FTP P+ HG +
Sbjct: 57 QIVSVTCGADHTVAYSQSGMEVYSWGWG-----DFGRLGHGNSSDLFTPLPIKALHGIRI 111
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
++ACG H +A+ GE SWG N NGQLGLGD E L P+ I+ F
Sbjct: 112 KQIACGDSHCLAVTMEGEVQ--------SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR- 162
Query: 120 WAVYEVTCGSFHTALLTH------------------------------------------ 137
+ V G+ HTA +T
Sbjct: 163 --IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC 220
Query: 138 --RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
R + +T+G + GQLGHG + L+P +++ L ++ + G HT
Sbjct: 221 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSN-SFISQISGGWRHTMA 279
Query: 196 VSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
++S G ++ WG K +G+ N D SP+ + P Q VQV+CG
Sbjct: 280 LTSDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV-----RFPDDQKVVQVSCGW 326
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
HT+ VT+ +++WGRG +G LG G+++D P I+
Sbjct: 327 RHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 363
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 35/244 (14%)
Query: 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL 106
+P+ + GH +V V CG++H VA +G + YSWG + G+LG G+
Sbjct: 46 SPTQLSALDGHQIVSVTCGADHTVAYSQSG-------MEVYSWGWGDFGRLGHGNSSDLF 98
Query: 107 RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ 166
P I+ + + ++ CG H +T +E ++G +NGQLG G T+
Sbjct: 99 TPLPIKALHGIR---IKQIACGDSHCLAVT--------MEGEVQSWGRNQNGQLGLGDTE 147
Query: 167 SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEA 224
+LVP++++ + + + V G HT+ V+ GD+ W WG LGL +
Sbjct: 148 DSLVPQKIQAF-EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL--------GDR 198
Query: 225 GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
D + P ++ G G K VACG HT+ V+ G L+++G + G LG G D
Sbjct: 199 TDRLVPERVTSTG--GEKMS---MVACGWRHTISVSYSG-ALYTYGWSKYGQLGHGDLED 252
Query: 285 FFAP 288
P
Sbjct: 253 HLIP 256
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Query: 178 PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNG 237
P+ V ++S G H+ + S V SWG + + L +A D SP +S
Sbjct: 3 PRKVLIISA--GASHSVALLSGDIVCSWGRGE------DGQLGHGDAEDRPSPTQLSALD 54
Query: 238 PHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
H V V CGA HTV + G +++SWG G G LG G + D F P
Sbjct: 55 GH-----QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTP 100
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 22/175 (12%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
++ V G ++++ +GAL+ +G G L P + + ++
Sbjct: 214 KMSMVACGWRHTISVSYSGALYTYG---WSKYGQLGHGDLEDHLIPHKLEALSNSFISQI 270
Query: 63 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
+ G H +AL S G+ Y WG N GQ+G+G+ + P + F D V
Sbjct: 271 SGGWRHTMALTSDGK--------LYGWGWNKFGQVGVGNNLDQCSPVQVR-FPDDQK--V 319
Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 177
+V+CG HT +T R + +G G NGQLG G + P+ ++ L
Sbjct: 320 VQVSCGWRHTLAVTERNN--------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 61
S I + G ++A+ + G L+ WG S P V VV+
Sbjct: 265 SFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS---PVQVRFPDDQKVVQ 321
Query: 62 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
V+CG H +A+ E ++WG NGQLG+G+ R PKIIE + D
Sbjct: 322 VSCGWRHTLAVT--------ERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVD 369
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 130/292 (44%), Gaps = 45/292 (15%)
Query: 6 SVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG 65
+V +GG LA+ + G ++ WG + G + P + G VV VA G
Sbjct: 111 AVNSGGKHCLALSSEGEVYSWGE---AEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 167
Query: 66 SEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV 125
H + +AG+ Y +WG G+LG D E +L+PK++E V ++
Sbjct: 168 GAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR---VVDI 216
Query: 126 TCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYL 183
CGS T LT + W++G G+ G+LG G + VP ++ L + +
Sbjct: 217 ACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGV 267
Query: 184 VSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISGNGPH 239
V V+CG + ++ +G V++WG KG LG + + R P + G
Sbjct: 268 VKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRR--------PRQV--QGLQ 315
Query: 240 GPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 316 GKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 363
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGN---CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
++ V AGG S + AG L+ WG L S +E P V GH V
Sbjct: 160 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHRV 213
Query: 60 VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
V +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 214 VDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---TG 264
Query: 120 WAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 179
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L Q
Sbjct: 265 LGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-Q 315
Query: 180 YVYLVSVDCGLFHTSVVSSAGDVWSWG--MEKGLGLCPNASLTRNEAGDAISPILISGNG 237
++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 316 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVA--A 365
Query: 238 PHGPKFQDPVQVACGAAHTV 257
G K +VACG+AHT+
Sbjct: 366 LQGKKVN---RVACGSAHTL 382
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 121/280 (43%), Gaps = 35/280 (12%)
Query: 11 GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVV 70
G +L +G ++ WG+ GG P+P V++ G + +
Sbjct: 10 GRENLYFQGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLF 66
Query: 71 ALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF 130
A+ + G+ Y+ G G+LG+G ES P ++E+ V V G
Sbjct: 67 AVTADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKV-AVNSGGK 117
Query: 131 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 190
H L+ E +++G E+G+LGHG P ++ L + + +V V G
Sbjct: 118 HCLALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGG 168
Query: 191 FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 250
H++ V++AGD+++WG + L +++ D + P L+ H V +A
Sbjct: 169 AHSACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIA 217
Query: 251 CGA--AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 288
CG+ A T+ +TDD +WSWG G G LG G + P
Sbjct: 218 CGSGDAQTLCLTDDD-TVWSWGDGDYGKLGRGGSDGCKVP 256
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 19/131 (14%)
Query: 165 TQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWSWG-MEKG-LGLCPNASLT 220
T+S P ++ + Q+V++ V+V+ G H +SS G+V+SWG E G LG +
Sbjct: 90 TESVSTPTLLESI-QHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCD 148
Query: 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
R +++ I + V VA G AH+ VT G L++WG+GR G LG
Sbjct: 149 RPRVIESLRGIEV-------------VDVAAGGAHSACVTAAG-DLYTWGKGRYGRLGHS 194
Query: 281 KTIDFFAPAIV 291
+ D P +V
Sbjct: 195 DSEDQLKPKLV 205
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 140/333 (42%), Gaps = 48/333 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPS--PVWDFHGHTVV 60
++ V AG + A+ + G +++WG+ G L+ S PV VV
Sbjct: 112 KVVQVSAGDSHTAALTDDGRVFLWGSF----RDNNGVIGLLEPMKKSMVPVQVQLDVPVV 167
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWG---------ANNNGQLGLGDRESRLRPKII 111
KVA G++H+V L + G+ Y L C G AN G+ GL E L PK +
Sbjct: 168 KVASGNDHLVMLTADGDLYT---LGCGEQGQLGRVPELFANRGGRQGL---ERLLVPKCV 221
Query: 112 ETFNQDSPWAV--YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
++ S V + CG++ T ++H E + FGL QLG T+S
Sbjct: 222 MLKSRGSRGHVRFQDAFCGAYFTFAISH--------EGHVYGFGLSNYHQLGTPGTESCF 273
Query: 170 VPEQVKELPQYVYL-VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
+P+ + V G HT + S G +S LG L E +
Sbjct: 274 IPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYS------LGRAEYGRLGLGEGAEEK 327
Query: 229 S-PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
S P LIS + VACGA+ VT DG ++++WG G + LGTG+ D ++
Sbjct: 328 SIPTLIS-------RLPAVSSVACGASVGYAVTKDG-RVFAWGMGTNYQLGTGQDEDAWS 379
Query: 288 PAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLE 320
P ++ L E +++GG + KD E
Sbjct: 380 PVEMMGKQL-ENRVVLSVSSGGQHTVLLVKDKE 411
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 20/147 (13%)
Query: 135 LTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTS 194
++HR + + T G G+ GQLG G + +P+ V V + G HT
Sbjct: 17 VSHRSHSTE--PGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDV--VQAEAGGMHTV 72
Query: 195 VVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP-VQVACGA 253
+S +G V+S+G L + S+ +E ++ G + Q+ VQV+ G
Sbjct: 73 CLSKSGQVYSFGCNDEGALGRDTSVEGSE--------MVPGK----VELQEKVVQVSAGD 120
Query: 254 AHTVLVTDDGYKLWSWG--RGRSGVLG 278
+HT +TDDG +++ WG R +GV+G
Sbjct: 121 SHTAALTDDG-RVFLWGSFRDNNGVIG 146
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 140/333 (42%), Gaps = 48/333 (14%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPS--PVWDFHGHTVV 60
++ V AG + A+ + G +++WG+ G L+ S PV VV
Sbjct: 101 KVVQVSAGDSHTAALTDDGRVFLWGSF----RDNNGVIGLLEPMKKSMVPVQVQLDVPVV 156
Query: 61 KVACGSEHVVALVSAGETYKGEDLVCYSWG---------ANNNGQLGLGDRESRLRPKII 111
KVA G++H+V L + G+ Y L C G AN G+ GL E L PK +
Sbjct: 157 KVASGNDHLVMLTADGDLYT---LGCGEQGQLGRVPELFANRGGRQGL---ERLLVPKCV 210
Query: 112 ETFNQDSPWAV--YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 169
++ S V + CG++ T ++H E + FGL QLG T+S
Sbjct: 211 MLKSRGSRGHVRFQDAFCGAYFTFAISH--------EGHVYGFGLSNYHQLGTPGTESCF 262
Query: 170 VPEQVKELPQYVYL-VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228
+P+ + V G HT + S G +S LG L E +
Sbjct: 263 IPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYS------LGRAEYGRLGLGEGAEEK 316
Query: 229 S-PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 287
S P LIS + VACGA+ VT DG ++++WG G + LGTG+ D ++
Sbjct: 317 SIPTLIS-------RLPAVSSVACGASVGYAVTKDG-RVFAWGMGTNYQLGTGQDEDAWS 368
Query: 288 PAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLE 320
P ++ L E +++GG + KD E
Sbjct: 369 PVEMMGKQL-ENRVVLSVSSGGQHTVLLVKDKE 400
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 20/147 (13%)
Query: 135 LTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTS 194
++HR + + T G G+ GQLG G + +P+ V V + G HT
Sbjct: 6 VSHRSHSTE--PGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDV--VQAEAGGMHTV 61
Query: 195 VVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP-VQVACGA 253
+S +G V+S+G L + S+ +E ++ G + Q+ VQV+ G
Sbjct: 62 CLSKSGQVYSFGCNDEGALGRDTSVEGSE--------MVPGK----VELQEKVVQVSAGD 109
Query: 254 AHTVLVTDDGYKLWSWG--RGRSGVLG 278
+HT +TDDG +++ WG R +GV+G
Sbjct: 110 SHTAALTDDG-RVFLWGSFRDNNGVIG 135
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 124/293 (42%), Gaps = 44/293 (15%)
Query: 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG--GF---SLVSSFTPSPVWDFHGH 57
++ + A MS A+ + G ++ WG EG GF + TP V F +
Sbjct: 149 KVVQLAATDNMSCALFSNGEVYAWGTF----RCNEGILGFYQDKIKIQKTPWKVPTFSKY 204
Query: 58 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 117
+V++A G +H++ L G + ++WG QLG E R R K ++
Sbjct: 205 NIVQLAPGKDHILFLDEEG--------MVFAWGNGQQNQLGRKVME-RFRLKTLDP---- 251
Query: 118 SPWAVYEV---TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG--HGTTQSALVPE 172
P+ + V G H LT + N ++ ++GL + GQ G ALV +
Sbjct: 252 RPFGLRHVKYIASGENHCFALT---KDNKLV-----SWGLNQFGQCGVSEDVEDGALVTK 303
Query: 173 QVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG----MEKGLGLCPNASLTRNEAGDA 227
+ LP V + S+ G H+ ++S GD++S G E G+ T +
Sbjct: 304 PKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGK 363
Query: 228 ISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 280
+ + + PKF+ VA G+ H+V V +G +SWG G + +G G
Sbjct: 364 ARAVPLPTKLNNVPKFK---SVAAGSHHSVAVAQNGIA-YSWGFGETYAVGLG 412
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 21/136 (15%)
Query: 4 ICSVKAGGMMSLAIDNAGALWMWGNCPL------PDSSTEGGFSLV---SSFTPSPVWDF 54
I S+ AG SL + G L+ G + D+ E + V + P P
Sbjct: 315 IRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLN 374
Query: 55 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG--DRESRLRPKIIE 112
+ VA GS H VA+ G + YSWG +GLG + ++ + +I
Sbjct: 375 NVPKFKSVAAGSHHSVAVAQNG--------IAYSWGFGETYAVGLGPFEDDTEVPTRIKN 426
Query: 113 TFNQDSPWAVYEVTCG 128
T QD + V CG
Sbjct: 427 TATQDH--NIILVGCG 440
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 112/300 (37%), Gaps = 52/300 (17%)
Query: 7 VKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 66
+ AG S + G ++ WG+ DS G + + +P+ G +A G+
Sbjct: 132 ISAGDSHSACLLEDGRVFAWGS--FRDSHGNMGLT-IDGNKRTPIDLMEGTVCCSIASGA 188
Query: 67 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGL---------GDRESR--LRPKIIETFN 115
+H+V L +AG+ + + G GQLG G R R LRP +
Sbjct: 189 DHLVILTTAGKVF--------TVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITR 240
Query: 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT--QSALVPEQ 173
A++ +F T + W GL QL H T + AL P +
Sbjct: 241 AKPFEAIWATNYCTFMRESQTQ----------VIWATGLNNFKQLAHETKGKEFALTPIK 290
Query: 174 VKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI-SPIL 232
EL ++ G HT ++++ G + L + D + P +
Sbjct: 291 T-ELKDIRHIAG---GQHHTVILTTDLKCSVVGRPE------YGRLGLGDVKDVVEKPTI 340
Query: 233 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292
+ + V V CG + VT DG KL+SWG G + LG G D P +V+
Sbjct: 341 VK------KLTEKIVSVGCGEVCSYAVTIDG-KLYSWGSGVNNQLGVGDGDDELEPIVVV 393
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 19/156 (12%)
Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
+FH L R ++L +C G G+ GQLG G + L +++ + V +
Sbjct: 30 AFHLELPKRRTVLGNVL--VC---GNGDVGQLGLG--EDILERKRLSPVAGIPDAVDISA 82
Query: 189 GLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ 248
G H V++ +GD++S+G L + S E G P LI G +
Sbjct: 83 GGMHNLVLTKSGDIYSFGCNDEGALGRDTS----EDGSESKPDLIDLPGK-------ALC 131
Query: 249 VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 284
++ G +H+ + +DG ++++WG R G TID
Sbjct: 132 ISAGDSHSACLLEDG-RVFAWGSFRDSHGNMGLTID 166
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 59 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 115
+V V CG A+ G+ Y SWG+ N QLG+GD + L P ++ + N
Sbjct: 348 IVSVGCGEVCSYAVTIDGKLY--------SWGSGVNNQLGVGDGDDELEPIVVVSKN 396
>pdb|3TJE|L Chain L, Crystal Structure Of Fas Receptor Extracellular Domain In
Complex With Fab E09
Length = 216
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 261 DDGYKLWSWGRG-RSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDE 304
DD K W +G G + VLG K AP++ L+PP +EE + ++
Sbjct: 93 DDTLKGWVFGGGTKVTVLGQPKA----APSVTLFPPSSEELQANK 133
>pdb|1RZ4|A Chain A, Crystal Structure Of Human Eif3k
Length = 226
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 87 YSWGANNNGQLGLGDRESRLRPK-IIETFNQDS 118
Y W A+ +GQ+ + +E ++PK I+E + DS
Sbjct: 177 YGWSADESGQIFICSQEESIKPKNIVEKIDFDS 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,809,513
Number of Sequences: 62578
Number of extensions: 614571
Number of successful extensions: 1652
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1456
Number of HSP's gapped (non-prelim): 57
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)