Query 013924
Match_columns 434
No_of_seqs 378 out of 1721
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:45:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 1.6E-39 3.5E-44 316.2 22.1 301 3-362 105-429 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 2.2E-36 4.7E-41 294.5 16.9 296 12-362 59-377 (476)
3 KOG1427 Uncharacterized conser 100.0 1.3E-34 2.7E-39 265.5 14.6 238 3-274 57-311 (443)
4 KOG1427 Uncharacterized conser 100.0 3.7E-31 8E-36 242.7 13.3 243 21-292 20-275 (443)
5 KOG0783 Uncharacterized conser 99.9 3.5E-23 7.6E-28 211.0 14.2 237 4-273 179-417 (1267)
6 KOG0783 Uncharacterized conser 99.9 1.1E-22 2.3E-27 207.5 11.1 221 15-272 136-362 (1267)
7 KOG1428 Inhibitor of type V ad 99.8 2.3E-18 5E-23 182.0 19.2 222 2-258 569-891 (3738)
8 KOG1428 Inhibitor of type V ad 99.7 2E-16 4.3E-21 167.7 20.0 247 2-302 525-877 (3738)
9 PF00415 RCC1: Regulator of ch 99.2 4.7E-11 1E-15 84.2 5.9 49 147-196 2-51 (51)
10 PF00415 RCC1: Regulator of ch 99.2 4.7E-11 1E-15 84.2 5.5 49 84-135 2-51 (51)
11 PF13540 RCC1_2: Regulator of 99.0 5.1E-10 1.1E-14 69.4 4.7 30 246-276 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.0 9.8E-10 2.1E-14 68.1 4.2 30 122-159 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 98.9 2.1E-11 4.6E-16 126.8 -5.9 174 2-200 14-197 (850)
14 KOG0941 E3 ubiquitin protein l 98.9 1.9E-11 4.2E-16 127.1 -7.9 143 47-209 4-154 (850)
15 KOG3669 Uncharacterized conser 93.8 3.7 8E-05 42.7 16.3 104 9-140 190-295 (705)
16 KOG3669 Uncharacterized conser 89.8 2.9 6.3E-05 43.4 10.3 71 121-205 228-299 (705)
17 KOG0943 Predicted ubiquitin-pr 79.8 0.25 5.5E-06 54.8 -2.6 128 56-207 373-504 (3015)
18 KOG0291 WD40-repeat-containing 77.6 1.1E+02 0.0025 33.3 17.0 30 180-209 394-423 (893)
19 KOG4693 Uncharacterized conser 74.9 80 0.0017 30.1 13.5 22 190-212 183-205 (392)
20 PF10168 Nup88: Nuclear pore c 73.4 1.5E+02 0.0033 32.7 16.8 120 13-141 34-173 (717)
21 KOG1900 Nuclear pore complex, 71.3 1E+02 0.0023 35.6 14.5 84 180-271 242-339 (1311)
22 TIGR01063 gyrA DNA gyrase, A s 71.3 1.8E+02 0.0039 32.6 17.4 163 8-206 543-716 (800)
23 KOG1408 WD40 repeat protein [F 70.8 69 0.0015 34.7 12.2 21 120-140 218-242 (1080)
24 PF07569 Hira: TUP1-like enhan 70.0 28 0.0006 32.2 8.5 30 2-31 13-42 (219)
25 smart00706 TECPR Beta propelle 68.8 12 0.00025 23.4 4.1 24 3-26 9-33 (35)
26 KOG0943 Predicted ubiquitin-pr 68.0 0.86 1.9E-05 50.9 -2.2 138 116-276 370-509 (3015)
27 KOG1274 WD40 repeat protein [G 67.9 1.5E+02 0.0032 33.0 14.2 74 9-93 13-87 (933)
28 PF11725 AvrE: Pathogenicity f 65.1 25 0.00054 41.5 8.3 73 174-271 697-771 (1774)
29 smart00706 TECPR Beta propelle 62.5 17 0.00036 22.7 3.9 24 182-205 9-33 (35)
30 PF07569 Hira: TUP1-like enhan 59.1 58 0.0012 30.1 8.4 27 121-155 14-40 (219)
31 PF04762 IKI3: IKI3 family; I 56.3 1.7E+02 0.0038 33.3 13.1 28 2-29 427-456 (928)
32 PF12341 DUF3639: Protein of u 53.7 32 0.00068 20.6 3.7 25 2-26 2-26 (27)
33 PF05924 SAMP: SAMP Motif; In 52.7 9.1 0.0002 21.0 1.1 12 421-432 4-15 (20)
34 PRK05560 DNA gyrase subunit A; 51.5 3.9E+02 0.0085 29.9 16.7 162 8-205 545-718 (805)
35 PF06739 SBBP: Beta-propeller 45.8 22 0.00048 22.9 2.4 19 191-209 15-33 (38)
36 PF11725 AvrE: Pathogenicity f 44.4 95 0.0021 37.0 8.6 28 4-31 491-518 (1774)
37 PHA02713 hypothetical protein; 44.3 4.2E+02 0.0091 28.2 13.4 15 194-208 458-472 (557)
38 KOG1240 Protein kinase contain 44.0 5.9E+02 0.013 29.8 15.2 66 3-77 1050-1121(1431)
39 COG4257 Vgb Streptogramin lyas 43.3 3E+02 0.0065 26.6 10.3 139 10-205 62-205 (353)
40 KOG4693 Uncharacterized conser 40.6 65 0.0014 30.7 5.5 66 190-270 80-146 (392)
41 PHA03098 kelch-like protein; P 40.1 3.3E+02 0.0072 28.5 11.7 17 13-30 336-352 (534)
42 KOG2106 Uncharacterized conser 39.6 4.7E+02 0.01 27.4 12.0 20 121-140 213-232 (626)
43 KOG1274 WD40 repeat protein [G 36.5 2.9E+02 0.0062 30.9 10.2 63 57-158 525-587 (933)
44 PF06648 DUF1160: Protein of u 34.0 51 0.0011 27.4 3.4 36 386-428 58-95 (122)
45 KOG0469 Elongation factor 2 [T 33.6 3.1 6.7E-05 42.7 -4.5 75 348-422 210-296 (842)
46 PF01436 NHL: NHL repeat; Int 33.3 65 0.0014 19.0 2.9 20 12-31 4-23 (28)
47 PF13418 Kelch_4: Galactose ox 30.9 49 0.0011 22.0 2.5 19 190-208 3-21 (49)
48 PHA02713 hypothetical protein; 29.5 5.3E+02 0.011 27.4 11.1 13 196-208 395-407 (557)
49 KOG0641 WD40 repeat protein [G 29.1 2E+02 0.0043 26.7 6.6 71 194-274 38-111 (350)
50 PF04762 IKI3: IKI3 family; I 28.4 9.4E+02 0.02 27.5 13.7 30 57-92 427-458 (928)
51 KOG0315 G-protein beta subunit 27.6 5.4E+02 0.012 24.5 16.9 68 122-209 127-198 (311)
52 KOG4441 Proteins containing BT 27.6 7.8E+02 0.017 26.3 13.1 22 249-271 509-530 (571)
53 PF07340 Herpes_IE1: Cytomegal 27.0 45 0.00098 33.1 2.2 16 413-428 338-353 (392)
54 KOG0293 WD40 repeat-containing 25.5 7.4E+02 0.016 25.3 11.5 28 182-209 442-471 (519)
55 PF03785 Peptidase_C25_C: Pept 25.2 1.2E+02 0.0026 23.3 3.7 29 181-209 16-45 (81)
56 PF03785 Peptidase_C25_C: Pept 22.3 1.6E+02 0.0036 22.5 4.0 33 245-278 17-50 (81)
57 COG4257 Vgb Streptogramin lyas 22.2 7.3E+02 0.016 24.1 9.3 108 64-213 61-172 (353)
58 PF08776 VASP_tetra: VASP tetr 21.9 1.8E+02 0.0039 19.1 3.5 30 399-428 5-36 (40)
59 KOG3110 Riboflavin kinase [Coe 21.0 1.9E+02 0.004 24.6 4.4 60 23-96 20-79 (153)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.6e-39 Score=316.25 Aligned_cols=301 Identities=24% Similarity=0.367 Sum_probs=222.4
Q ss_pred CeEEEEecCCeEEEEecCCcEEEecCCCCCCCCCCCCc--------------cccccccceeecc----CCCCcEEEEEe
Q 013924 3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF--------------SLVSSFTPSPVWD----FHGHTVVKVAC 64 (434)
Q Consensus 3 kI~~Va~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~--------------~~~~~~~p~~v~~----~~~~~I~~Vs~ 64 (434)
.|++++||++|+++|++||+||+||.|..| +||.-.. ......+|..|+. ....+|++++|
T Consensus 105 ~i~~~acGg~hsl~ld~Dg~lyswG~N~~G-~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~c 183 (476)
T COG5184 105 SIIKIACGGNHSLGLDHDGNLYSWGDNDDG-ALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLAC 183 (476)
T ss_pred eeEEeecCCceEEeecCCCCEEEeccCccc-ccccccccccccccccccccchhhcccCCceeeccccccCChheEEeec
Confidence 589999999999999999999999999999 7776551 2334667777776 22348999999
Q ss_pred cCCeEEEEEcCCCcccCCCceEEEeeCCCCCcCCCCCCCCeec----ceeeeccCCCCCCcEEEEeecCceEEEEEccCC
Q 013924 65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR----PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKR 140 (434)
Q Consensus 65 G~~hs~~lt~~G~vy~~~~~~vy~wG~N~~GQLG~g~~~~~~~----P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~ 140 (434)
|++++++|+++|+ ||+||....+.++.+...+... ++++.... ..|+++++|.+|.++|++.|+
T Consensus 184 g~e~svil~~~G~--------V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~~----~~i~qla~G~dh~i~lt~~G~ 251 (476)
T COG5184 184 GWEISVILTADGR--------VYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPK----KAIVQLAAGADHLIALTNEGK 251 (476)
T ss_pred CCceEEEEccCCc--------EEEecCccccccccccccccccceeeeeeeecCc----hheeeeccCCceEEEEecCCc
Confidence 9999999999996 9999999999999885444322 33333321 369999999999999999999
Q ss_pred CCCcCCCeEEEeecCCCCCCCCCCCCCccccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEEeCCCCCCCCCCCCCC
Q 013924 141 PNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLT 220 (434)
Q Consensus 141 ~~~~~~~~vy~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~~lG~~~~~~~~ 220 (434)
||+||+|..||||....+....+..+..+-.-..|+.|+||.+|++||+++|++|+||.|. +|+++..+ .
T Consensus 252 --------vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~-fgqlg~~~-~ 321 (476)
T COG5184 252 --------VYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNI-FGQLGAGS-D 321 (476)
T ss_pred --------EEEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccch-hcccccCc-c
Confidence 9999999999999988776666666544333345889999999999999999999999997 66554431 1
Q ss_pred CCCCCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCC--CCCeeccEEecCCcchh
Q 013924 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK--TIDFFAPAIVLWPPLTE 298 (434)
Q Consensus 221 ~~~~~~~~~P~~i~~~~~~~~~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~~GqLG~g~--~~~~~~P~~V~~p~~~~ 298 (434)
+........|..... .....|..|++|..|+++|..+| .||+||++..+|||.++ +.++..|+++... .
T Consensus 322 ~~~~a~~tk~~~~~~-----~~~~~i~~is~ge~H~l~L~~~G-~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~---~ 392 (476)
T COG5184 322 GEIGALTTKPNYKQL-----LSGVTICSISAGESHSLILRKDG-TLYAFGRGDRGQLGIQEEITIDVSTPTKLSVA---I 392 (476)
T ss_pred cccceeecccccccc-----CCCceEEEEecCcceEEEEecCc-eEEEecCCccccccCcccceeecCCccccccc---c
Confidence 222223333433322 22234789999999999999999 99999999999999998 4455555444211 1
Q ss_pred hhccccccccCCCcccccccccchhhhhhhhhhHHHHHHHHhhhhhhhhhhcccccceeecccc
Q 013924 299 EFKQDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPF 362 (434)
Q Consensus 299 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~hgql~~~~~ 362 (434)
. ..++.|.+.+..-+ ..+.+ .++||.+.||||-.-|+
T Consensus 393 ~-----~~~v~~gt~~~~~~---------------------t~~gs-vy~wG~ge~gnlG~g~~ 429 (476)
T COG5184 393 K-----LEQVACGTHHNIAR---------------------TDDGS-VYSWGWGEHGNLGNGPK 429 (476)
T ss_pred c-----eEEEEecCccceee---------------------ccCCc-eEEecCchhhhccCCch
Confidence 1 22334443322222 12334 44999999999986555
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=2.2e-36 Score=294.48 Aligned_cols=296 Identities=21% Similarity=0.322 Sum_probs=217.1
Q ss_pred CeEEEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccC--CCCcEEEEEecCCeEEEEEcCCCcccCCCceEEEe
Q 013924 12 MMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDF--HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSW 89 (434)
Q Consensus 12 ~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~--~~~~I~~Vs~G~~hs~~lt~~G~vy~~~~~~vy~w 89 (434)
.|..+.+.-..||+||.|... +||.|..... ...|...+.. ....|++++||..|+++|+.+|+ ||+|
T Consensus 59 ~~~~~~~~~~~v~~~Gsn~~~-eLGlg~de~~-~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~--------lysw 128 (476)
T COG5184 59 KHTHLLVKMASVYSWGSNGMN-ELGLGNDETK-VDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGN--------LYSW 128 (476)
T ss_pred cchhhhhheeeeEEEecCcce-eeccCCchhc-ccCceecCcccccceeeEEeecCCceEEeecCCCC--------EEEe
Confidence 455577788899999999887 9999985555 6777776665 56789999999999999999996 9999
Q ss_pred eCCCCCcCCCCCC----------------CCeecceeeeccCC-CCCCcEEEEeecCceEEEEEccCCCCCcCCCeEEEe
Q 013924 90 GANNNGQLGLGDR----------------ESRLRPKIIETFNQ-DSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTF 152 (434)
Q Consensus 90 G~N~~GQLG~g~~----------------~~~~~P~~v~~~~~-~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~w 152 (434)
|.|..|+||.... +...+|..|+.... .++.+|++++||++++++|+++|+ ||+|
T Consensus 129 G~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~--------V~~~ 200 (476)
T COG5184 129 GDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGR--------VYSW 200 (476)
T ss_pred ccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCc--------EEEe
Confidence 9999999998761 22567888886333 223479999999999999999999 9999
Q ss_pred ecCCCCCCCCCCCCCcc----ccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEEeCCCCCCCCCCCCCCCCCCCCce
Q 013924 153 GLGENGQLGHGTTQSAL----VPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 228 (434)
Q Consensus 153 G~n~~GqLG~g~~~~~~----~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~~lG~~~~~~~~~~~~~~~~ 228 (434)
|.+..+.++.+...+.. .++++... ...|+++++|..|.++|+++|+||+||.|.+.+++... .....
T Consensus 201 gt~r~~e~~~g~~~~s~k~~~~~~p~~v~--~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~------~e~~~ 272 (476)
T COG5184 201 GTFRCGELGQGSYKNSQKTSIQFTPLKVP--KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPT------SERLK 272 (476)
T ss_pred cCccccccccccccccccceeeeeeeecC--chheeeeccCCceEEEEecCCcEEEecCCcccccCCch------hhhcc
Confidence 99999999888544322 24444322 45699999999999999999999999999743332111 11122
Q ss_pred eeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCCCCCeeccEEecCCcchhhhcccccccc
Q 013924 229 SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTG 308 (434)
Q Consensus 229 ~P~~i~~~~~~~~~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~~GqLG~g~~~~~~~P~~V~~p~~~~~f~~~~~~~~ 308 (434)
.+..+.. ......|..|+||.+|++||+++| ++|+||.|.+||||.+ ++...|+....|....-+....+.
T Consensus 273 ~~~lv~~----~f~i~~i~~vacG~~h~~al~~~G-~i~a~G~n~fgqlg~~--~~~~~~a~~tk~~~~~~~~~~~i~-- 343 (476)
T COG5184 273 LVVLVGD----PFAIRNIKYVACGKDHSLALDEDG-EIYAWGVNIFGQLGAG--SDGEIGALTTKPNYKQLLSGVTIC-- 343 (476)
T ss_pred cccccCC----hhhhhhhhhcccCcceEEEEcCCC-eEEEeccchhcccccC--cccccceeeccccccccCCCceEE--
Confidence 2222221 122335789999999999999999 9999999999999998 445555555555444433332111
Q ss_pred CCCcccccccccchhhhhhhhhhHHHHHHHHhhhhhhhhhhcccccceeecccc
Q 013924 309 GLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPF 362 (434)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~hgql~~~~~ 362 (434)
.+++.+++..+|..++ -+++|||+++|||+...+
T Consensus 344 -------------------~is~ge~H~l~L~~~G-~l~a~Gr~~~~qlg~~~~ 377 (476)
T COG5184 344 -------------------SISAGESHSLILRKDG-TLYAFGRGDRGQLGIQEE 377 (476)
T ss_pred -------------------EEecCcceEEEEecCc-eEEEecCCccccccCccc
Confidence 1133344444445554 455999999999998875
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=265.48 Aligned_cols=238 Identities=29% Similarity=0.491 Sum_probs=193.1
Q ss_pred CeEEEEec--CCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEcCCCccc
Q 013924 3 QICSVKAG--GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK 80 (434)
Q Consensus 3 kI~~Va~G--~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy~ 80 (434)
+|+-|++| ..|+++|+-+|+.|+||.|..| |||++ +......|+.|+.+...+|++.+||++|+++|+++|.
T Consensus 57 ~iR~VasG~~aaH~vli~megk~~~wGRNekG-QLGhg--D~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~--- 130 (443)
T KOG1427|consen 57 NIRFVASGCAAAHCVLIDMEGKCYTWGRNEKG-QLGHG--DMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQ--- 130 (443)
T ss_pred eEEEEecccchhhEEEEecccceeecccCccC-ccCcc--chhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCc---
Confidence 47777766 4699999999999999999999 99999 5667788999999999999999999999999999996
Q ss_pred CCCceEEEeeCCCCCcCCCCCCCC-eecceeeeccCCCCCCcEEEEeecCceEEEEEccCCCCCcCCCeEEEeecCCCCC
Q 013924 81 GEDLVCYSWGANNNGQLGLGDRES-RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQ 159 (434)
Q Consensus 81 ~~~~~vy~wG~N~~GQLG~g~~~~-~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~Gq 159 (434)
||+||.|.+||||++.... +..|.++.... ..|+.|+||..+|+.|+..+. +.++|.-.|||
T Consensus 131 -----v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~----~~v~~v~cga~ftv~l~~~~s--------i~t~glp~ygq 193 (443)
T KOG1427|consen 131 -----VLAFGENKYGQLGLGNAKNEVESTPLPCVVS----DEVTNVACGADFTVWLSSTES--------ILTAGLPQYGQ 193 (443)
T ss_pred -----EEEecccccccccccccccccccCCCccccC----ccceeeccccceEEEeecccc--------eeecCCccccc
Confidence 9999999999999998665 33333333222 269999999999999999988 99999999999
Q ss_pred CCCCCCCC--------------ccccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEEeCCCCCCCCCCCCCCCCCCC
Q 013924 160 LGHGTTQS--------------ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAG 225 (434)
Q Consensus 160 LG~g~~~~--------------~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~~lG~~~~~~~~~~~~~ 225 (434)
||+++... +..|..|..+ ....|++++||.+||+|++++++||+||-+. ||.++.. +..
T Consensus 194 lgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~-dgvqiv~~acg~nhtvavd~nkrVysWGFGG-yGRLGHa-----EqK 266 (443)
T KOG1427|consen 194 LGHGTDNEFNMKDSSVRLAYEAQPRPKAIASL-DGVQIVKVACGTNHTVAVDKNKRVYSWGFGG-YGRLGHA-----EQK 266 (443)
T ss_pred cccCcchhhccccccceeeeecCCCccccccc-cceeeEEEeccCcceeeecCCccEEEecccc-ccccccc-----cch
Confidence 99986531 2344455555 4678999999999999999999999999886 5544332 234
Q ss_pred CceeeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcCCCeEEEEeCCCC
Q 013924 226 DAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRS 274 (434)
Q Consensus 226 ~~~~P~~i~~~~~~~~~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~~ 274 (434)
+...|+++..+..... -.-++.||...++++.+-| .+|.||.+..
T Consensus 267 DEmvpRlik~Fd~~~r---g~~~~~~g~t~Sl~v~e~G-~Lf~~g~~k~ 311 (443)
T KOG1427|consen 267 DEMVPRLIKVFDRNNR---GPPNAILGYTGSLNVAEGG-QLFMWGKIKN 311 (443)
T ss_pred hhHHHHHHHHhcCCCC---CCcceeeecccceeecccc-eeEEeecccc
Confidence 5667777765433222 2347999999999999999 9999998763
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=99.97 E-value=3.7e-31 Score=242.74 Aligned_cols=243 Identities=27% Similarity=0.446 Sum_probs=186.2
Q ss_pred CcEEEecCCCCCCCCCCCCc-cccccccceeeccCCCCcEEEEEec--CCeEEEEEcCCCcccCCCceEEEeeCCCCCcC
Q 013924 21 GALWMWGNCPLPDSSTEGGF-SLVSSFTPSPVWDFHGHTVVKVACG--SEHVVALVSAGETYKGEDLVCYSWGANNNGQL 97 (434)
Q Consensus 21 G~vy~wG~n~~G~qlg~g~~-~~~~~~~p~~v~~~~~~~I~~Vs~G--~~hs~~lt~~G~vy~~~~~~vy~wG~N~~GQL 97 (434)
|++..+|.-..- +.|..+. .......|.++..+.+.+|..|+.| ..|+++|+-+|+ +|+||.|..|||
T Consensus 20 g~ml~~g~v~wd-~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk--------~~~wGRNekGQL 90 (443)
T KOG1427|consen 20 GEMLFCGAVAWD-ITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGK--------CYTWGRNEKGQL 90 (443)
T ss_pred ccEEEeccchhh-hhcccccccccccccceeccccccceEEEEecccchhhEEEEecccc--------eeecccCccCcc
Confidence 566666654431 2222211 1124567888888888889999855 559999999996 999999999999
Q ss_pred CCCCCCCeecceeeeccCCCCCCcEEEEeecCceEEEEEccCCCCCcCCCeEEEeecCCCCCCCCCCCCC-ccccEEeee
Q 013924 98 GLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS-ALVPEQVKE 176 (434)
Q Consensus 98 G~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqLG~g~~~~-~~~p~~v~~ 176 (434)
|+++...+..|+.|+.+... +|++.+||.+||++||.+|. ||+||.|.+||||.+++.+ ...|.++..
T Consensus 91 GhgD~k~~e~Ptvi~gL~~~---~iv~AA~GrnHTl~ltdtG~--------v~afGeNK~GQlGlgn~~~~v~s~~~~~~ 159 (443)
T KOG1427|consen 91 GHGDMKQRERPTVISGLSKH---KIVKAAAGRNHTLVLTDTGQ--------VLAFGENKYGQLGLGNAKNEVESTPLPCV 159 (443)
T ss_pred CccchhhccCCchhhhhhhh---hHHHHhhccCcEEEEecCCc--------EEEecccccccccccccccccccCCCccc
Confidence 99999999999999988764 79999999999999999999 9999999999999998754 333333322
Q ss_pred CCCcceEEEEEecCceEEEEecCCcEEEEeCCCCCCCCCCCCCCC---CCC------CCceeeEEeeCCCCCCCCCCCcE
Q 013924 177 LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTR---NEA------GDAISPILISGNGPHGPKFQDPV 247 (434)
Q Consensus 177 l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~~lG~~~~~~~~~---~~~------~~~~~P~~i~~~~~~~~~~~~i~ 247 (434)
. ...|+.|+||..+++.|+..+.+..+|... ||+.+...... .+. ...+.|..|.. .....|+
T Consensus 160 ~--~~~v~~v~cga~ftv~l~~~~si~t~glp~-ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~-----~dgvqiv 231 (443)
T KOG1427|consen 160 V--SDEVTNVACGADFTVWLSSTESILTAGLPQ-YGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIAS-----LDGVQIV 231 (443)
T ss_pred c--CccceeeccccceEEEeecccceeecCCcc-ccccccCcchhhccccccceeeeecCCCcccccc-----ccceeeE
Confidence 2 346999999999999999999999999875 55544332211 111 11122333322 3456799
Q ss_pred EEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCCCCCeeccEEec
Q 013924 248 QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVL 292 (434)
Q Consensus 248 ~I~~G~~hs~~lt~dG~~vy~wG~n~~GqLG~g~~~~~~~P~~V~ 292 (434)
+++||.+|++++++++ +||+||-+.+|.||+....+-..|+.|.
T Consensus 232 ~~acg~nhtvavd~nk-rVysWGFGGyGRLGHaEqKDEmvpRlik 275 (443)
T KOG1427|consen 232 KVACGTNHTVAVDKNK-RVYSWGFGGYGRLGHAEQKDEMVPRLIK 275 (443)
T ss_pred EEeccCcceeeecCCc-cEEEeccccccccccccchhhHHHHHHH
Confidence 9999999999999999 9999999999999999888877777654
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.90 E-value=3.5e-23 Score=211.02 Aligned_cols=237 Identities=20% Similarity=0.319 Sum_probs=187.0
Q ss_pred eEEEEecCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEcCCCcccCCC
Q 013924 4 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGED 83 (434)
Q Consensus 4 I~~Va~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy~~~~ 83 (434)
+.+|+.+..|++++++.|+||+||-+..| .+|.| +....+.|++|+.+.+++|.+|++...|+++||.+|
T Consensus 179 ~~qV~l~kfHSvfl~~kgqvY~cGhG~GG-RlG~g--deq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g------- 248 (1267)
T KOG0783|consen 179 FSQVQLSKFHSVFLTEKGQVYVCGHGAGG-RLGFG--DEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFG------- 248 (1267)
T ss_pred HHHHHHhhceeeEecCCCcEEEeccCCCC-ccCcC--cccccccccccccccccceEEEEeecceeEEEeecc-------
Confidence 34688999999999999999999999988 89988 455678899999999999999999999999999999
Q ss_pred ceEEEeeCCCCCcCCCCCCCC-eecceeeeccCCCCCCcEEEEeecCceEEEEEccCCCCCcCCCeEEEeecCCCCCCCC
Q 013924 84 LVCYSWGANNNGQLGLGDRES-RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGH 162 (434)
Q Consensus 84 ~~vy~wG~N~~GQLG~g~~~~-~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqLG~ 162 (434)
.||+||.|.++|||+.+.+. ...|.+|..........|+.|+||..|+++.|..- ||+||.| .||||+
T Consensus 249 -~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVawt~~~---------VY~wGlN-~GQlGi 317 (1267)
T KOG0783|consen 249 -SVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHSVAWTDTD---------VYSWGLN-NGQLGI 317 (1267)
T ss_pred -eEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcccceeeeeecce---------EEEeccc-CceecC
Confidence 49999999999999986654 45566666554444347999999999999999664 9999998 699998
Q ss_pred CCC-CCccccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEEeCCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCC
Q 013924 163 GTT-QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 241 (434)
Q Consensus 163 g~~-~~~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~ 241 (434)
.+. .....|+.+.. ....|..|+|....|++++.+|.+|++-.-.++-+..+. .....+.|.+-+ ...
T Consensus 318 ~~n~~~Vt~Pr~l~~--~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~~~n~--------~~lks~~V~gg~-l~~ 386 (1267)
T KOG0783|consen 318 SDNISVVTTPRRLAG--LLSPVIHVVATTRATVCLLQNNSIIAFADYNQVKLPFNV--------DFLKSLKVTGGP-LSL 386 (1267)
T ss_pred CCCCceeecchhhcc--cccceEEEEecCccEEEEecCCcEEEEecccceecCcch--------hccceeEEecCc-cch
Confidence 876 34567876643 345799999999999999999999999876655553221 223344444311 111
Q ss_pred CCCCcEEEEecCceeEEEEcCCCeEEEEeCCC
Q 013924 242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGR 273 (434)
Q Consensus 242 ~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~ 273 (434)
...++.+..+...-.+++++-| +||.|-.+.
T Consensus 387 ~~~~~~k~~a~~~kll~lte~g-~Vy~w~s~n 417 (1267)
T KOG0783|consen 387 TRFNVRKLLASENKLLVLTELG-EVYEWDSKN 417 (1267)
T ss_pred hhhhhhhcchhhhheeeeccCC-eEEEEecCC
Confidence 2234567777778889999999 999999654
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.88 E-value=1.1e-22 Score=207.53 Aligned_cols=221 Identities=22% Similarity=0.379 Sum_probs=175.6
Q ss_pred EEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccC--CCCcEEEEEecCCeEEEEEcCCCcccCCCceEEEeeCC
Q 013924 15 LAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDF--HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGAN 92 (434)
Q Consensus 15 ~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~--~~~~I~~Vs~G~~hs~~lt~~G~vy~~~~~~vy~wG~N 92 (434)
.++|.-+.||+||.|.+- -||.|+.. ....|..|..| .+.-+.+|+.+..|++++++.|+ ||++|.+
T Consensus 136 ~~~d~pndvy~wG~N~N~-tLGign~~--~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgq--------vY~cGhG 204 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNN-TLGIGNGK--EPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQ--------VYVCGHG 204 (1267)
T ss_pred cccCCccceeEecccccc-cccccCCC--CCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCc--------EEEeccC
Confidence 345666899999999885 78887644 44566666555 45557889999999999999996 9999999
Q ss_pred CCCcCCCCCCCCeecceeeeccCCCCCCcEEEEeecCceEEEEEccCCCCCcCCCeEEEeecCCCCCCCCCCCC-Ccccc
Q 013924 93 NNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVP 171 (434)
Q Consensus 93 ~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqLG~g~~~-~~~~p 171 (434)
.-|.||.|+......|++|+.+... +|.+|++...|+++||++|. ||+||.|..+|||..+.. ....|
T Consensus 205 ~GGRlG~gdeq~~~iPkrV~gL~gh---~~~qisvs~~HslvLT~~g~--------Vys~GlN~~hqLG~~~~~~~~~~p 273 (1267)
T KOG0783|consen 205 AGGRLGFGDEQYNFIPKRVPGLIGH---KVIQISVSHTHSLVLTKFGS--------VYSWGLNGSHQLGLSNDELKKDDP 273 (1267)
T ss_pred CCCccCcCccccccccccccccccc---ceEEEEeecceeEEEeecce--------EEEeecCcccccCCcCchhhcCch
Confidence 9999999988889999999986654 79999999999999999999 999999999999987653 34445
Q ss_pred EEeeeC--CCcceEEEEEecCceEEEEecCCcEEEEeCCC-CCCCCCCCCCCCCCCCCceeeEEeeCCCCCCCCCCCcEE
Q 013924 172 EQVKEL--PQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK-GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ 248 (434)
Q Consensus 172 ~~v~~l--~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~-~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~~~~~i~~ 248 (434)
.+|... .....|+-|+||..|+++.|+. .||+||.|. |+|+.++ ...+..|+.+.. ....|..
T Consensus 274 ~qI~a~r~kg~~~iIgvaAg~~hsVawt~~-~VY~wGlN~GQlGi~~n-------~~~Vt~Pr~l~~------~~~~v~~ 339 (1267)
T KOG0783|consen 274 IQITARRIKGFKQIIGVAAGKSHSVAWTDT-DVYSWGLNNGQLGISDN-------ISVVTTPRRLAG------LLSPVIH 339 (1267)
T ss_pred hhhhhHhhcchhhhhhhhcccceeeeeecc-eEEEecccCceecCCCC-------Cceeecchhhcc------cccceEE
Confidence 554321 1223599999999999999976 699999998 7886432 335556654432 2235788
Q ss_pred EEecCceeEEEEcCCCeEEEEeCC
Q 013924 249 VACGAAHTVLVTDDGYKLWSWGRG 272 (434)
Q Consensus 249 I~~G~~hs~~lt~dG~~vy~wG~n 272 (434)
++|...-++++++++ .+|++-+-
T Consensus 340 v~a~~~ATVc~~~~~-~i~~~ady 362 (1267)
T KOG0783|consen 340 VVATTRATVCLLQNN-SIIAFADY 362 (1267)
T ss_pred EEecCccEEEEecCC-cEEEEecc
Confidence 999999999999999 89988753
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.80 E-value=2.3e-18 Score=182.00 Aligned_cols=222 Identities=27% Similarity=0.387 Sum_probs=158.5
Q ss_pred CCeEEEEecCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEcCCCcccC
Q 013924 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKG 81 (434)
Q Consensus 2 ~kI~~Va~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy~~ 81 (434)
.||+.|.+...---.+.+||++|+.|....- .......+..+.+.-|.+++.|..|.++++.+|+
T Consensus 569 rKIv~v~~s~~VY~~vSenGkifM~G~~tm~-----------~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~---- 633 (3738)
T KOG1428|consen 569 RKIVHVCASGHVYGYVSENGKIFMGGLHTMR-----------VNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGH---- 633 (3738)
T ss_pred ceeEEEeeeeEEEEEEccCCeEEeecceeEE-----------ecchHHHhhccccceeehhhccccceeEEEeCCe----
Confidence 4677776666555678999999999975431 1112234556778889999999999999999996
Q ss_pred CCceEEEeeCCCCCcCCCCCCCC-------------e-------------------------------------------
Q 013924 82 EDLVCYSWGANNNGQLGLGDRES-------------R------------------------------------------- 105 (434)
Q Consensus 82 ~~~~vy~wG~N~~GQLG~g~~~~-------------~------------------------------------------- 105 (434)
||+||.|..+|+|.-.... +
T Consensus 634 ----l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~C 709 (3738)
T KOG1428|consen 634 ----LFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHC 709 (3738)
T ss_pred ----EEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCccccc
Confidence 9999999999998621000 0
Q ss_pred -------------------------------------------ecceeeeccCCCCCCcEEEEeecCceEEEEEccCCCC
Q 013924 106 -------------------------------------------LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPN 142 (434)
Q Consensus 106 -------------------------------------------~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~~~ 142 (434)
..|..|.........++.+|+||..||++|.++++
T Consensus 710 G~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~-- 787 (3738)
T KOG1428|consen 710 GVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRR-- 787 (3738)
T ss_pred CCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCc--
Confidence 01112211122223589999999999999999999
Q ss_pred CcCCCeEEEeecCCCCCCCCCCCCCccccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEEeCCC--CCCCCCCCCCC
Q 013924 143 DMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLT 220 (434)
Q Consensus 143 ~~~~~~vy~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~--~lG~~~~~~~~ 220 (434)
||+||.|-+||||+|++.....|+.|..+ .+..+++|++|.+||++...||.||.||.-. ||+.. .
T Consensus 788 ------VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~-~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP-----~ 855 (3738)
T KOG1428|consen 788 ------VFTFGSNCHGQLGVGDTLSKNTPQQVILP-SDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARP-----A 855 (3738)
T ss_pred ------EEEecCCcccccCcCccccCCCcceEEcC-CCCceEEEecCCCceEEEecCCcEEEeccccCccccCc-----c
Confidence 99999999999999999999999999755 5567999999999999999999999999865 33321 1
Q ss_pred CCCCCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEE
Q 013924 221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVL 258 (434)
Q Consensus 221 ~~~~~~~~~P~~i~~~~~~~~~~~~i~~I~~G~~hs~~ 258 (434)
+....-...|.+++++.+.... ....|.+.+..+++
T Consensus 856 ~e~~~WNA~Pe~v~~~G~~f~~--~A~WIGAdGDss~i 891 (3738)
T KOG1428|consen 856 GEKAGWNAIPEKVSGFGPGFNA--FAGWIGADGDSSII 891 (3738)
T ss_pred ccccccccCCCcCCCCCccccc--cceeeccCCCccee
Confidence 1222233456667665443322 23455555544443
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.73 E-value=2e-16 Score=167.66 Aligned_cols=247 Identities=20% Similarity=0.282 Sum_probs=159.1
Q ss_pred CCeEEEEecCCeEEEEec--CCcEEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEcCCCcc
Q 013924 2 SQICSVKAGGMMSLAIDN--AGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETY 79 (434)
Q Consensus 2 ~kI~~Va~G~~h~~alt~--~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy 79 (434)
++|++|+.|-..++++.- +|.++.-|.... .+ ......| .+..+|+.|.+...---.+.++|+
T Consensus 525 ~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k~-----~~---~~Rr~~P-----~n~rKIv~v~~s~~VY~~vSenGk-- 589 (3738)
T KOG1428|consen 525 EPIVQISVGIDTIMFRSGAGHGWIASVDDKKR-----NG---RLRRLVP-----SNRRKIVHVCASGHVYGYVSENGK-- 589 (3738)
T ss_pred CceEEEEeccchhheeeccCcceEEeccCccc-----cc---chhhcCC-----CCcceeEEEeeeeEEEEEEccCCe--
Confidence 589999999988877654 455555443221 11 1111222 223467777544433346677886
Q ss_pred cCCCceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEeecCceEEEEEccCCCCCcCCCeEEEeecCCCCC
Q 013924 80 KGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQ 159 (434)
Q Consensus 80 ~~~~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~Gq 159 (434)
+|..|..... ....-+.+..+ .+..|.+++.|..|+++++++|+ ||+||.|+.+|
T Consensus 590 ------ifM~G~~tm~--------~n~SSqmln~L---~~~~isslAlGKsH~~av~rNG~--------l~T~GlNN~~Q 644 (3738)
T KOG1428|consen 590 ------IFMGGLHTMR--------VNVSSQMLNGL---DNVMISSLALGKSHGVAVTRNGH--------LFTWGLNNMNQ 644 (3738)
T ss_pred ------EEeecceeEE--------ecchHHHhhcc---ccceeehhhccccceeEEEeCCe--------EEEEecCCccc
Confidence 7888753210 00011122222 23478999999999999999999 99999999999
Q ss_pred CCCCCCCC------------------------------------------------------------------------
Q 013924 160 LGHGTTQS------------------------------------------------------------------------ 167 (434)
Q Consensus 160 LG~g~~~~------------------------------------------------------------------------ 167 (434)
+|.-....
T Consensus 645 CGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~ 724 (3738)
T KOG1428|consen 645 CGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRP 724 (3738)
T ss_pred ccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceecccccc
Confidence 98532110
Q ss_pred --------------------ccccEEee---------eCCCcceEEEEEecCceEEEEecCCcEEEEeCCC--CCCCCCC
Q 013924 168 --------------------ALVPEQVK---------ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPN 216 (434)
Q Consensus 168 --------------------~~~p~~v~---------~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~--~lG~~~~ 216 (434)
...|+++. .-|-..++.+|+||.+|+++|.+|++||.||.|. |||.+
T Consensus 725 C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~G-- 802 (3738)
T KOG1428|consen 725 CGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVG-- 802 (3738)
T ss_pred ccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcC--
Confidence 00111111 0112347999999999999999999999999997 45543
Q ss_pred CCCCCCCCCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCCCC-CeeccEEecCCc
Q 013924 217 ASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI-DFFAPAIVLWPP 295 (434)
Q Consensus 217 ~~~~~~~~~~~~~P~~i~~~~~~~~~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~~GqLG~g~~~-~~~~P~~V~~p~ 295 (434)
+......|+.+.. +....+++|++|++|++++..|| .||.+|.=.+|||+.+--. ..+.-.|-..|.
T Consensus 803 ------Dt~Sk~~Pq~V~~-----~~~t~~vQVaAGSNHT~l~~~DG-sVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~ 870 (3738)
T KOG1428|consen 803 ------DTLSKNTPQQVIL-----PSDTVIVQVAAGSNHTILRANDG-SVFTFGAFGKGQLARPAGEKAGWNAIPEKVSG 870 (3738)
T ss_pred ------ccccCCCcceEEc-----CCCCceEEEecCCCceEEEecCC-cEEEeccccCccccCccccccccccCCCcCCC
Confidence 2334456777766 22335899999999999999999 9999999999999987533 222222223355
Q ss_pred chhhhcc
Q 013924 296 LTEEFKQ 302 (434)
Q Consensus 296 ~~~~f~~ 302 (434)
.+..|..
T Consensus 871 ~G~~f~~ 877 (3738)
T KOG1428|consen 871 FGPGFNA 877 (3738)
T ss_pred CCccccc
Confidence 5555543
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.18 E-value=4.7e-11 Score=84.22 Aligned_cols=49 Identities=35% Similarity=0.563 Sum_probs=44.1
Q ss_pred CeEEEeecCCCCCCC-CCCCCCccccEEeeeCCCcceEEEEEecCceEEEE
Q 013924 147 SMCWTFGLGENGQLG-HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 196 (434)
Q Consensus 147 ~~vy~wG~n~~GqLG-~g~~~~~~~p~~v~~l~~~~~I~~I~~G~~hs~al 196 (434)
|.||+||.|.+|||| .+.......|+++..+. ..+|++|+||.+||+||
T Consensus 2 G~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~-~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 2 GRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLS-GVRIVQVACGSDHTLAL 51 (51)
T ss_dssp SEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGT-TSEEEEEEEESSEEEEE
T ss_pred CcEEEEECCCCCCCCCCCCCCceeEEEEECCCC-CCCEEEEEeCcceEEEC
Confidence 459999999999999 77788899999998774 47899999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.17 E-value=4.7e-11 Score=84.21 Aligned_cols=49 Identities=39% Similarity=0.623 Sum_probs=44.3
Q ss_pred ceEEEeeCCCCCcCC-CCCCCCeecceeeeccCCCCCCcEEEEeecCceEEEE
Q 013924 84 LVCYSWGANNNGQLG-LGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL 135 (434)
Q Consensus 84 ~~vy~wG~N~~GQLG-~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~L 135 (434)
+.||+||.|.+|||| .++......|+++..+.. .+|++|+||.+||++|
T Consensus 2 G~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~---~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 2 GRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSG---VRIVQVACGSDHTLAL 51 (51)
T ss_dssp SEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTT---SEEEEEEEESSEEEEE
T ss_pred CcEEEEECCCCCCCCCCCCCCceeEEEEECCCCC---CCEEEEEeCcceEEEC
Confidence 359999999999999 888888999999998776 4899999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.01 E-value=5.1e-10 Score=69.40 Aligned_cols=30 Identities=43% Similarity=0.902 Sum_probs=25.8
Q ss_pred cEEEEecCceeEEEEcCCCeEEEEeCCCCCC
Q 013924 246 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGV 276 (434)
Q Consensus 246 i~~I~~G~~hs~~lt~dG~~vy~wG~n~~Gq 276 (434)
|++|+||..|+++|+++| +||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g-~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDG-EVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TT-EEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCC-CEEEEcCCcCCC
Confidence 579999999999999999 999999999998
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.95 E-value=9.8e-10 Score=68.13 Aligned_cols=30 Identities=33% Similarity=0.705 Sum_probs=25.9
Q ss_pred EEEEeecCceEEEEEccCCCCCcCCCeEEEeecCCCCC
Q 013924 122 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQ 159 (434)
Q Consensus 122 I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~Gq 159 (434)
|++|+||.+|+++|+++|+ ||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~--------v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGE--------VYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTE--------EEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCC--------EEEEcCCcCCC
Confidence 6899999999999999999 99999999998
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.1e-11 Score=126.83 Aligned_cols=174 Identities=26% Similarity=0.373 Sum_probs=129.1
Q ss_pred CCeEEEEecCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEc-------
Q 013924 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVS------- 74 (434)
Q Consensus 2 ~kI~~Va~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~------- 74 (434)
++|.+++||..|+++++..|++|.||.|.+| |++.+ ....+.. |.+++.+.+.+..+|+||.+|++++..
T Consensus 14 k~~lq~~cGn~hclal~~~g~~~~wg~~~~g-~~~~~-~~~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~ 90 (850)
T KOG0941|consen 14 KHILQVGCGNNHCLALSCAGELFVWGMNNNG-QLGRA-LYFPDAK-PEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTD 90 (850)
T ss_pred hhhhhhccccHHHHhhhccCCeeeccCCccc-hhhhh-ccCCCCC-CccchhhcCCcHHHHhcCCCcchhhhhchhhcch
Confidence 4789999999999999999999999999999 99988 3445555 999999999999999999999988776
Q ss_pred CCCcccCCCceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEeecCceEEEEEc-cCCCCCcCCCeEEEee
Q 013924 75 AGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH-RKRPNDMLESMCWTFG 153 (434)
Q Consensus 75 ~G~vy~~~~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~-~G~~~~~~~~~vy~wG 153 (434)
+|. ++++|....||+|++.......|..+..+-. ..+.+|+||..|+++... -|+ +|.+|
T Consensus 91 e~~--------~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~---~~~t~ia~~~~ht~a~v~~l~q--------sf~~~ 151 (850)
T KOG0941|consen 91 EGK--------VFSFGAGSTGQLGHSLTENEVLPLLVLELIG---SRVTRIACVRGHTLAIVPRLGQ--------SFSFG 151 (850)
T ss_pred hcc--------ccccCCcccccccccccccccccHHHHHHHh---hhhHHHHHHHHHHHhhhhhhcc--------eeecc
Confidence 774 8999999999999977776666766654433 268999999999887654 344 99999
Q ss_pred cCCCCCCCCCCCCCccccEEeeeCC--CcceEEEEEecCceEEEEecCC
Q 013924 154 LGENGQLGHGTTQSALVPEQVKELP--QYVYLVSVDCGLFHTSVVSSAG 200 (434)
Q Consensus 154 ~n~~GqLG~g~~~~~~~p~~v~~l~--~~~~I~~I~~G~~hs~alt~dG 200 (434)
.+..|. +.-.+...+.....-. ....+..+.+|.+.+..+...+
T Consensus 152 ~~~sGk---~~i~s~s~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 152 KGASGK---GVIVSLSGEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKG 197 (850)
T ss_pred cCCCCC---ceeeccchhhhcccccHHHHHHHHHHhcCCCceEEEEeec
Confidence 988771 1001111111111000 0122445778888888776654
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.9e-11 Score=127.12 Aligned_cols=143 Identities=31% Similarity=0.548 Sum_probs=116.2
Q ss_pred cceeeccCCCCcEEEEEecCCeEEEEEcCCCcccCCCceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEe
Q 013924 47 TPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT 126 (434)
Q Consensus 47 ~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy~~~~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is 126 (434)
.|..+..+...++.+++||++|+++++..|+ +++||.|.+||+|.+.......|..++.+.. .+..+|+
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~--------~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g---~p~a~v~ 72 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGE--------LFVWGMNNNGQLGRALYFPDAKPEPVESLKG---VPLAQVS 72 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCC--------eeeccCCccchhhhhccCCCCCCccchhhcC---CcHHHHh
Confidence 3445555556689999999999999999996 9999999999999994444344888776654 4688999
Q ss_pred ecCceEEEEEc-------cCCCCCcCCCeEEEeecCCCCCCCCCCCCCccccEEeeeCCCcceEEEEEecCceEEEEe-c
Q 013924 127 CGSFHTALLTH-------RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS-S 198 (434)
Q Consensus 127 ~G~~ht~~Lt~-------~G~~~~~~~~~vy~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~~I~~I~~G~~hs~alt-~ 198 (434)
||.+|++++.. .|. ++++|....||+|+........|..+..+ -...+..|+||..|+++.- .
T Consensus 73 ~g~~hs~~lS~~~~~lt~e~~--------~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~-i~~~~t~ia~~~~ht~a~v~~ 143 (850)
T KOG0941|consen 73 AGEAHSFALSSHTVLLTDEGK--------VFSFGAGSTGQLGHSLTENEVLPLLVLEL-IGSRVTRIACVRGHTLAIVPR 143 (850)
T ss_pred cCCCcchhhhhchhhcchhcc--------ccccCCcccccccccccccccccHHHHHH-HhhhhHHHHHHHHHHHhhhhh
Confidence 99999887766 666 99999999999999777777777777655 3457999999999998774 5
Q ss_pred CCcEEEEeCCC
Q 013924 199 AGDVWSWGMEK 209 (434)
Q Consensus 199 dG~Vy~wG~n~ 209 (434)
-|++|.+|.+.
T Consensus 144 l~qsf~~~~~~ 154 (850)
T KOG0941|consen 144 LGQSFSFGKGA 154 (850)
T ss_pred hcceeecccCC
Confidence 68999999876
No 15
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=93.77 E-value=3.7 Score=42.66 Aligned_cols=104 Identities=14% Similarity=0.129 Sum_probs=68.5
Q ss_pred ecCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccCC-CCcEEEEEecC-CeEEEEEcCCCcccCCCceE
Q 013924 9 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFH-GHTVVKVACGS-EHVVALVSAGETYKGEDLVC 86 (434)
Q Consensus 9 ~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~-~~~I~~Vs~G~-~hs~~lt~~G~vy~~~~~~v 86 (434)
.|.....||..+|++|.=-. ... ..+.-...+... ...+++|++|. .-..+++.+|.+ +
T Consensus 190 ~g~~~awAI~s~Gd~y~RtG--------vs~----~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~v-------f 250 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLRTG--------VSV----DRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAV-------F 250 (705)
T ss_pred CCceEEEEEecCCcEEEecc--------ccC----CCCCCceeeecCCCCccceEeecCcceEEEEeeCCcE-------E
Confidence 45566677888888886321 110 011111111111 11588999999 677899999984 7
Q ss_pred EEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEeecCceEEEEEccCC
Q 013924 87 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKR 140 (434)
Q Consensus 87 y~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~ 140 (434)
|--|-..+.+.|..=. ++.+|.... .++.|+.|..-.-+||.+|+
T Consensus 251 ~R~GVsRqNp~GdsWk-dI~tP~~a~--------~~v~iSvGt~t~Waldndg~ 295 (705)
T KOG3669|consen 251 YREGVSRQNPEGDSWK-DIVTPRQAL--------EPVCISVGTQTLWALDNDGN 295 (705)
T ss_pred EEecccccCCCCchhh-hccCccccc--------ceEEEEeccceEEEEecCCc
Confidence 8999888777775433 445555543 38999999988999999999
No 16
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=89.76 E-value=2.9 Score=43.40 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=55.6
Q ss_pred cEEEEeecC-ceEEEEEccCCCCCcCCCeEEEeecCCCCCCCCCCCCCccccEEeeeCCCcceEEEEEecCceEEEEecC
Q 013924 121 AVYEVTCGS-FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 199 (434)
Q Consensus 121 ~I~~Is~G~-~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~d 199 (434)
.+.+|++|. .-..+++++|.+ +|--|-....+.|..-. +..+|.... .++.|+.|...--+||.+
T Consensus 228 ~L~qISagPtg~VwAvt~nG~v-------f~R~GVsRqNp~GdsWk-dI~tP~~a~------~~v~iSvGt~t~Waldnd 293 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAV-------FYREGVSRQNPEGDSWK-DIVTPRQAL------EPVCISVGTQTLWALDND 293 (705)
T ss_pred ccceEeecCcceEEEEeeCCcE-------EEEecccccCCCCchhh-hccCccccc------ceEEEEeccceEEEEecC
Confidence 478999999 777899999995 78889888888875433 334444332 289999999999999999
Q ss_pred CcEEEE
Q 013924 200 GDVWSW 205 (434)
Q Consensus 200 G~Vy~w 205 (434)
|.||.-
T Consensus 294 g~lwfr 299 (705)
T KOG3669|consen 294 GNLWFR 299 (705)
T ss_pred CcEEEE
Confidence 999964
No 17
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=79.79 E-value=0.25 Score=54.78 Aligned_cols=128 Identities=13% Similarity=0.121 Sum_probs=82.5
Q ss_pred CCcEEEEEecCCeEEEEEcCCCcccCCCceEEEeeCCCCCcCCCC--CCCCeecceeeeccCCCCCCcEEEEeecCceEE
Q 013924 56 GHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTCGSFHTA 133 (434)
Q Consensus 56 ~~~I~~Vs~G~~hs~~lt~~G~vy~~~~~~vy~wG~N~~GQLG~g--~~~~~~~P~~v~~~~~~~~~~I~~Is~G~~ht~ 133 (434)
..+++.|.+-.+.-++|..+|+ +|.|-+...--|-.. ...+...|..-. + ...+.+|+.+++..--.-
T Consensus 373 an~~I~I~A~s~el~AlhrkGe--------lYqWaWdESEglddplai~kn~dHPd~a~-i-G~hge~ii~lSanniR~s 442 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGE--------LYQWAWDESEGLDDPLAINKNLDHPDAAF-I-GLHGEKIILLSANNIRAS 442 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCc--------eeeeecccccCCCChhhcccCCCCCccce-e-cccCCeeEEeecCceeee
Confidence 4578888888888899999997 677776554333221 122233343321 1 122348999999999999
Q ss_pred EEEccCCCCCcCCCeEEEeecCCCCCCCCCCCCC--ccccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEEeC
Q 013924 134 LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS--ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM 207 (434)
Q Consensus 134 ~Lt~~G~~~~~~~~~vy~wG~n~~GqLG~g~~~~--~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~ 207 (434)
++|++|+ |.+|=+ .+|.+.... ...-+.+. . +...+++--|...|+++...|+-+|-||-
T Consensus 443 i~T~ngh--------lasWlD----EcgagV~fkLa~ea~Tkie-e-d~~maVqd~~~adhlaAf~~dniihWcGi 504 (3015)
T KOG0943|consen 443 IATENGH--------LASWLD----ECGAGVAFKLAHEAQTKIE-E-DGEMAVQDHCCADHLAAFLEDNIIHWCGI 504 (3015)
T ss_pred eeecCCc--------hhhHHh----hhhhhhhhhhhhhhhhhhh-h-hhHHHHHHHHHHHHHHHHhhhceeeEEee
Confidence 9999999 888843 233322211 11112222 1 34556777788999999999999999995
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=77.58 E-value=1.1e+02 Score=33.26 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=21.9
Q ss_pred cceEEEEEecCceEEEEecCCcEEEEeCCC
Q 013924 180 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEK 209 (434)
Q Consensus 180 ~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~ 209 (434)
....+++..-.+.-+..+-||.|-+|-...
T Consensus 394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred ceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 344566666667677777899999998765
No 19
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=74.94 E-value=80 Score=30.15 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=14.3
Q ss_pred CceEEEEecCCcEEEEeCCC-CCC
Q 013924 190 LFHTSVVSSAGDVWSWGMEK-GLG 212 (434)
Q Consensus 190 ~~hs~alt~dG~Vy~wG~n~-~lG 212 (434)
++|+..+-+ +.+|.+|--. +.|
T Consensus 183 DFH~a~~~~-~~MYiFGGR~D~~g 205 (392)
T KOG4693|consen 183 DFHTASVID-GMMYIFGGRSDESG 205 (392)
T ss_pred hhhhhhhcc-ceEEEeccccccCC
Confidence 356665554 8999998643 444
No 20
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=73.43 E-value=1.5e+02 Score=32.67 Aligned_cols=120 Identities=20% Similarity=0.219 Sum_probs=61.4
Q ss_pred eEEEEecCCcEEEecCCCCCCCCC-------CCCcc----ccccccceeeccCCCCcEEEEEecCC-eEEEEEcCCCccc
Q 013924 13 MSLAIDNAGALWMWGNCPLPDSST-------EGGFS----LVSSFTPSPVWDFHGHTVVKVACGSE-HVVALVSAGETYK 80 (434)
Q Consensus 13 h~~alt~~G~vy~wG~n~~G~qlg-------~g~~~----~~~~~~p~~v~~~~~~~I~~Vs~G~~-hs~~lt~~G~vy~ 80 (434)
..++...+|.||+|-.+... .+. ..... ......|... ....|.+|..... +.+||.-.-.+.
T Consensus 34 rNLl~~~d~~L~vWd~~e~~-l~~~nlr~~~~~~~~~~~~~~q~L~~~~~---~~f~v~~i~~n~~g~~lal~G~~~v~- 108 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECC-LLTVNLRSLESDAEGPAKSSYQKLLPSNP---PLFEVHQISLNPTGSLLALVGPRGVV- 108 (717)
T ss_pred eeeEEEeCCEEEEEECCCCE-EEEEeeccccccccCccccCcceeecCCC---CceeEEEEEECCCCCEEEEEcCCcEE-
Confidence 44555557999999987653 100 00000 0111111111 2235777765444 224444333332
Q ss_pred CCCceEEE---eeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEe-----ecCceEEEEEccCCC
Q 013924 81 GEDLVCYS---WGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT-----CGSFHTALLTHRKRP 141 (434)
Q Consensus 81 ~~~~~vy~---wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is-----~G~~ht~~Lt~~G~~ 141 (434)
.++- ||.+.+-+-|-.....+..|.--..+.......|.++. ..+.|-++||+|+.+
T Consensus 109 ----V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~l 173 (717)
T PF10168_consen 109 ----VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTL 173 (717)
T ss_pred ----EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEE
Confidence 1333 77775555454444444555444444444455677774 347899999999863
No 21
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.32 E-value=1e+02 Score=35.63 Aligned_cols=84 Identities=23% Similarity=0.211 Sum_probs=45.0
Q ss_pred cceEEEEEecCceEE--EEecCCcEEEE--eCCCCCCCCCCCCCCCCC----CCCceeeEEeeCCCCCCCCCCCcEEEE-
Q 013924 180 YVYLVSVDCGLFHTS--VVSSAGDVWSW--GMEKGLGLCPNASLTRNE----AGDAISPILISGNGPHGPKFQDPVQVA- 250 (434)
Q Consensus 180 ~~~I~~I~~G~~hs~--alt~dG~Vy~w--G~n~~lG~~~~~~~~~~~----~~~~~~P~~i~~~~~~~~~~~~i~~I~- 250 (434)
...|.+|+.+....+ ++++.|.|=+| |.|. .+-+......... ......| .....+..|++|.
T Consensus 242 ~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G-~~~~r~~~~~~~~i~~qa~~~~~~-------~~~s~f~~IvsI~~ 313 (1311)
T KOG1900|consen 242 KDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG-LGGPRFVSVSRNYIDVQALSLKNP-------LDDSVFFSIVSISP 313 (1311)
T ss_pred CCcceeeEeccccceeeeeccCceEEEEEccCCC-ccceeeeehhHHHHHHHhhhcccc-------CCCcccceeEEecc
Confidence 457999999887765 45677766555 4443 2211111100000 0000111 1112334555554
Q ss_pred -----ecCceeEEEEcCCCeEEEEeC
Q 013924 251 -----CGAAHTVLVTDDGYKLWSWGR 271 (434)
Q Consensus 251 -----~G~~hs~~lt~dG~~vy~wG~ 271 (434)
.-.-|.+|+|..|-++|.=|.
T Consensus 314 l~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 314 LSASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred cCcccccceeEEEEecCCeEEEEecc
Confidence 356799999999988887774
No 22
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=71.29 E-value=1.8e+02 Score=32.59 Aligned_cols=163 Identities=11% Similarity=0.011 Sum_probs=80.0
Q ss_pred EecCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccc--eeeccCCCCcEEEEEec-----CCeEEEEEcCCCccc
Q 013924 8 KAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTP--SPVWDFHGHTVVKVACG-----SEHVVALVSAGETYK 80 (434)
Q Consensus 8 a~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p--~~v~~~~~~~I~~Vs~G-----~~hs~~lt~~G~vy~ 80 (434)
+....+.+++|+.|++|..-...-. ... ....-.| ..+....+.+|+.+.+- ....+++|.+|.
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~IP----~~~--r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~Gy--- 613 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQIP----EAS--RTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGV--- 613 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhhCc----CCC--cCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCE---
Confidence 3455667889999999999443221 110 0111111 11223356677776652 225677888884
Q ss_pred CCCceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEee--cCceEEEEEccCCCCCcCCCeEEEeecCCCC
Q 013924 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC--GSFHTALLTHRKRPNDMLESMCWTFGLGENG 158 (434)
Q Consensus 81 ~~~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~--G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~G 158 (434)
+--.-.+.+-.... .-...-.+.. ...++.+.. ...+.+++|++|+ +|.+=...--
T Consensus 614 -----iKRi~l~~~~~~~r-------~G~~aiklke--~D~lv~v~~~~~~d~lll~Ts~Gr--------~~r~~v~eIp 671 (800)
T TIGR01063 614 -----VKKTSLTEFSNIRS-------NGIIAIKLDD--GDELISVRLTSGDDEVMLGSKNGK--------AVRFPEEDVR 671 (800)
T ss_pred -----EEEEEhHHhhhhcc-------CCcccccCCC--CCEEEEEEEeCCCCEEEEEECCCc--------EEEEEhhhcC
Confidence 33222111110000 0000001111 123443333 3356889999999 8887655443
Q ss_pred CCCCCCCCCccccEEeeeCCCcceEEEEEec--CceEEEEecCCcEEEEe
Q 013924 159 QLGHGTTQSALVPEQVKELPQYVYLVSVDCG--LFHTSVVSSAGDVWSWG 206 (434)
Q Consensus 159 qLG~g~~~~~~~p~~v~~l~~~~~I~~I~~G--~~hs~alt~dG~Vy~wG 206 (434)
..|... ....+..+..+.+|+.+.+- ..+-+++|++|.+.-.=
T Consensus 672 ~~gr~~-----~Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~ 716 (800)
T TIGR01063 672 PMGRAA-----RGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTS 716 (800)
T ss_pred CcCCCC-----CCeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEE
Confidence 333221 11222245566777776653 23567778888666543
No 23
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=70.79 E-value=69 Score=34.70 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=18.6
Q ss_pred CcEEEEeecCc----eEEEEEccCC
Q 013924 120 WAVYEVTCGSF----HTALLTHRKR 140 (434)
Q Consensus 120 ~~I~~Is~G~~----ht~~Lt~~G~ 140 (434)
..+..|+||.. .|+++|..|.
T Consensus 218 n~f~avaCg~gicAestfait~qGh 242 (1080)
T KOG1408|consen 218 NEFLAVACGVGICAESTFAITAQGH 242 (1080)
T ss_pred chhhhhhhcCcccccceEEEecccc
Confidence 36789999997 8999999998
No 24
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.98 E-value=28 Score=32.19 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=26.0
Q ss_pred CCeEEEEecCCeEEEEecCCcEEEecCCCC
Q 013924 2 SQICSVKAGGMMSLAIDNAGALWMWGNCPL 31 (434)
Q Consensus 2 ~kI~~Va~G~~h~~alt~~G~vy~wG~n~~ 31 (434)
+++..+.|-+.+.++||++|.+|+|--...
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~ 42 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKG 42 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCC
Confidence 367889999999999999999999986554
No 25
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=68.82 E-value=12 Score=23.42 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=20.8
Q ss_pred CeEEEEecC-CeEEEEecCCcEEEe
Q 013924 3 QICSVKAGG-MMSLAIDNAGALWMW 26 (434)
Q Consensus 3 kI~~Va~G~-~h~~alt~~G~vy~w 26 (434)
++++|++|. ....+++.+|.+|..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 578999999 888899999999864
No 26
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=68.02 E-value=0.86 Score=50.87 Aligned_cols=138 Identities=16% Similarity=0.115 Sum_probs=89.5
Q ss_pred CCCCCcEEEEeecCceEEEEEccCCCCCcCCCeEEEeecCCCCCCCCCCC--CCccccEEeeeCCCcceEEEEEecCceE
Q 013924 116 QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT--QSALVPEQVKELPQYVYLVSVDCGLFHT 193 (434)
Q Consensus 116 ~~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqLG~g~~--~~~~~p~~v~~l~~~~~I~~I~~G~~hs 193 (434)
++...+++.|.+-++..++|..+|+ +|.|-..+.--|...-. .+...|..-..-..+.+|+..++..--.
T Consensus 370 Dddan~~I~I~A~s~el~AlhrkGe--------lYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~ 441 (3015)
T KOG0943|consen 370 DDDANKFICIGALSSELLALHRKGE--------LYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRA 441 (3015)
T ss_pred CCCCCeeEEeehhHHHHHHHhhCCc--------eeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceee
Confidence 4445589999999999999999999 99998766544433211 2233343322112467899999999999
Q ss_pred EEEecCCcEEEEeCCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcCCCeEEEEeCCC
Q 013924 194 SVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGR 273 (434)
Q Consensus 194 ~alt~dG~Vy~wG~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~ 273 (434)
-++|.+|.|-+|=....-|... .. ....-+.+. .....+++..|...|.++...|. .+|-||---
T Consensus 442 si~T~nghlasWlDEcgagV~f--kL------a~ea~Tkie------ed~~maVqd~~~adhlaAf~~dn-iihWcGiVP 506 (3015)
T KOG0943|consen 442 SIATENGHLASWLDECGAGVAF--KL------AHEAQTKIE------EDGEMAVQDHCCADHLAAFLEDN-IIHWCGIVP 506 (3015)
T ss_pred eeeecCCchhhHHhhhhhhhhh--hh------hhhhhhhhh------hhhHHHHHHHHHHHHHHHHhhhc-eeeEEeeee
Confidence 9999999999996543111100 00 000111111 12345677889999999999998 999999654
Q ss_pred CCC
Q 013924 274 SGV 276 (434)
Q Consensus 274 ~Gq 276 (434)
+-|
T Consensus 507 f~e 509 (3015)
T KOG0943|consen 507 FSE 509 (3015)
T ss_pred ehh
Confidence 443
No 27
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=67.89 E-value=1.5e+02 Score=33.00 Aligned_cols=74 Identities=18% Similarity=0.232 Sum_probs=49.7
Q ss_pred ecCCeEEEEecCCc-EEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEcCCCcccCCCceEE
Q 013924 9 AGGMMSLAIDNAGA-LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCY 87 (434)
Q Consensus 9 ~G~~h~~alt~~G~-vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy~~~~~~vy 87 (434)
.++...++++.+|+ |+++|.+.. ..-... ..+...|..+.. .+..|..|+|-.+|.+.-++++-+ .+|
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~--ir~~~~--~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv------~~y 81 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGD--IRKWKT--NSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTV------LRY 81 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCc--eEEeec--CCcccCCchhhc-cCceeEEEeecccceEEeeccceE------EEe
Confidence 45667788888885 677777654 221111 122245655543 567899999999999999888865 478
Q ss_pred EeeCCC
Q 013924 88 SWGANN 93 (434)
Q Consensus 88 ~wG~N~ 93 (434)
.+++..
T Consensus 82 ~fps~~ 87 (933)
T KOG1274|consen 82 KFPSGE 87 (933)
T ss_pred eCCCCC
Confidence 887654
No 28
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=65.06 E-value=25 Score=41.45 Aligned_cols=73 Identities=14% Similarity=0.167 Sum_probs=43.1
Q ss_pred eeeCCCcceEEEEE-ecCceEEEEecCCcEEEEeCCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCCCCCCcEEEEec
Q 013924 174 VKELPQYVYLVSVD-CGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACG 252 (434)
Q Consensus 174 v~~l~~~~~I~~I~-~G~~hs~alt~dG~Vy~wG~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~~~~~i~~I~~G 252 (434)
|.+++ +..|..++ .+.++.++|++.|++-+.=. ...|+.+...... -.|..|+.=
T Consensus 697 l~Gl~-~~~i~a~Avv~~~~fvald~qg~lt~h~k-------------------~g~p~~l~~~gl~----G~ik~l~lD 752 (1774)
T PF11725_consen 697 LEGLE-DRVITAFAVVNDNKFVALDDQGDLTAHQK-------------------PGRPVPLSRPGLS----GEIKDLALD 752 (1774)
T ss_pred ccCCC-cCcceeEEEEcCCceEEeccCCccccccC-------------------CCCCccCCCCCCC----cchhheeec
Confidence 34443 34455443 46788999999997654320 0114444332111 247788887
Q ss_pred Ccee-EEEEcCCCeEEEEeC
Q 013924 253 AAHT-VLVTDDGYKLWSWGR 271 (434)
Q Consensus 253 ~~hs-~~lt~dG~~vy~wG~ 271 (434)
..|. +|++.+| ++|.-=.
T Consensus 753 ~~~nL~Alt~~G-~Lf~~~k 771 (1774)
T PF11725_consen 753 EKQNLYALTSTG-ELFRLPK 771 (1774)
T ss_pred cccceeEecCCC-ceeecCH
Confidence 7755 5888999 9997543
No 29
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=62.49 E-value=17 Score=22.71 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.0
Q ss_pred eEEEEEecC-ceEEEEecCCcEEEE
Q 013924 182 YLVSVDCGL-FHTSVVSSAGDVWSW 205 (434)
Q Consensus 182 ~I~~I~~G~-~hs~alt~dG~Vy~w 205 (434)
.+++|++|. ....+++.+|++|..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 589999999 888899999999853
No 30
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=59.10 E-value=58 Score=30.09 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=23.9
Q ss_pred cEEEEeecCceEEEEEccCCCCCcCCCeEEEeecC
Q 013924 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG 155 (434)
Q Consensus 121 ~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n 155 (434)
++..+.|-.++-+++|.+|. +|+|=-.
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~--------l~vWnl~ 40 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGL--------LYVWNLK 40 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCe--------EEEEECC
Confidence 57889999999999999999 9999643
No 31
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=56.29 E-value=1.7e+02 Score=33.28 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=22.8
Q ss_pred CCeEEEEecCCe--EEEEecCCcEEEecCC
Q 013924 2 SQICSVKAGGMM--SLAIDNAGALWMWGNC 29 (434)
Q Consensus 2 ~kI~~Va~G~~h--~~alt~~G~vy~wG~n 29 (434)
+.|.+|+....+ .++++.+|+|..|-..
T Consensus 427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred CCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 468899998888 7999999987777643
No 32
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=53.70 E-value=32 Score=20.56 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.1
Q ss_pred CCeEEEEecCCeEEEEecCCcEEEe
Q 013924 2 SQICSVKAGGMMSLAIDNAGALWMW 26 (434)
Q Consensus 2 ~kI~~Va~G~~h~~alt~~G~vy~w 26 (434)
++|..|++|....++.|+.+-|-.|
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEec
Confidence 5799999999999999998866543
No 33
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=52.74 E-value=9.1 Score=21.02 Aligned_cols=12 Identities=42% Similarity=0.742 Sum_probs=9.3
Q ss_pred HHHHHhhccCCC
Q 013924 421 EIVNECLHSSTI 432 (434)
Q Consensus 421 ~~~~~~~~~~~~ 432 (434)
||++||+.|--+
T Consensus 4 eiL~~CI~sAmP 15 (20)
T PF05924_consen 4 EILQECIGSAMP 15 (20)
T ss_dssp HHHHHHHHCTS-
T ss_pred HHHHHHHHHhcc
Confidence 899999988654
No 34
>PRK05560 DNA gyrase subunit A; Validated
Probab=51.54 E-value=3.9e+02 Score=29.95 Aligned_cols=162 Identities=12% Similarity=0.028 Sum_probs=80.8
Q ss_pred EecCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccce--eeccCCCCcEEEEEecC-----CeEEEEEcCCCccc
Q 013924 8 KAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPS--PVWDFHGHTVVKVACGS-----EHVVALVSAGETYK 80 (434)
Q Consensus 8 a~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~--~v~~~~~~~I~~Vs~G~-----~hs~~lt~~G~vy~ 80 (434)
+....+.+++|+.|++|..-...-. ..+. ...-.|. .+...++.+|+.+.+-. ...+++|.+|.
T Consensus 545 ~~t~d~LllfTs~Grv~~l~v~~iP-~~~~-----~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~Gy--- 615 (805)
T PRK05560 545 ASTHDTLLFFTNRGRVYRLKVYEIP-EASR-----TARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGT--- 615 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEhhhCc-CCCc-----CCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCE---
Confidence 3455567889999999998765332 1110 0111111 12233566788777654 35678888884
Q ss_pred CCCceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEee--cCceEEEEEccCCCCCcCCCeEEEeecCCCC
Q 013924 81 GEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC--GSFHTALLTHRKRPNDMLESMCWTFGLGENG 158 (434)
Q Consensus 81 ~~~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~--G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~G 158 (434)
+--.-.+.+-....+ ....-.+.. ...++.+.. ...+.+++|++|+ +|.+=...--
T Consensus 616 -----iKRi~l~~~~~~~r~-------G~~~ikLke--~D~lv~v~~~~~~d~lll~T~~Gr--------~~r~~~~eIp 673 (805)
T PRK05560 616 -----VKKTSLSEFSNIRSN-------GIIAINLDE--GDELIGVRLTDGDDDILLATKNGK--------AIRFPESDVR 673 (805)
T ss_pred -----EEEEEhHHhhhcccC-------CceeeccCC--CCEEEEEEEeCCCCEEEEEECCCc--------EEEEEhhhcC
Confidence 222211111100000 001111111 123443333 3356889999999 8877544332
Q ss_pred CCCCCCCCCccccEEeeeCCCcceEEEEEecC---ceEEEEecCCcEEEE
Q 013924 159 QLGHGTTQSALVPEQVKELPQYVYLVSVDCGL---FHTSVVSSAGDVWSW 205 (434)
Q Consensus 159 qLG~g~~~~~~~p~~v~~l~~~~~I~~I~~G~---~hs~alt~dG~Vy~w 205 (434)
..|... ....+..+..+.+|+.+.+.. .+.+++|+.|.+.-.
T Consensus 674 ~~gr~~-----~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~ 718 (805)
T PRK05560 674 PMGRTA-----RGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRT 718 (805)
T ss_pred ccCccc-----CCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEE
Confidence 222211 122223445566777766543 256777888765544
No 35
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=45.84 E-value=22 Score=22.91 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=15.9
Q ss_pred ceEEEEecCCcEEEEeCCC
Q 013924 191 FHTSVVSSAGDVWSWGMEK 209 (434)
Q Consensus 191 ~hs~alt~dG~Vy~wG~n~ 209 (434)
-+.++++.+|.+|+.|.-.
T Consensus 15 ~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEEECCCCCEEEEEeec
Confidence 3678999999999999753
No 36
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=44.40 E-value=95 Score=36.98 Aligned_cols=28 Identities=18% Similarity=0.043 Sum_probs=21.6
Q ss_pred eEEEEecCCeEEEEecCCcEEEecCCCC
Q 013924 4 ICSVKAGGMMSLAIDNAGALWMWGNCPL 31 (434)
Q Consensus 4 I~~Va~G~~h~~alt~~G~vy~wG~n~~ 31 (434)
.++|..-..+.++.|.+|+||.--....
T Consensus 491 A~~VgLs~drLFvADseGkLYsa~l~~~ 518 (1774)
T PF11725_consen 491 AQSVGLSNDRLFVADSEGKLYSADLPAA 518 (1774)
T ss_pred hhheeecCCeEEEEeCCCCEEecccccc
Confidence 4567777778899999999998765544
No 37
>PHA02713 hypothetical protein; Provisional
Probab=44.34 E-value=4.2e+02 Score=28.19 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=10.8
Q ss_pred EEEecCCcEEEEeCC
Q 013924 194 SVVSSAGDVWSWGME 208 (434)
Q Consensus 194 ~alt~dG~Vy~wG~n 208 (434)
.+..-+|++|+.|-.
T Consensus 458 ~~~~~~~~IYv~GG~ 472 (557)
T PHA02713 458 GVVSHKDDIYVVCDI 472 (557)
T ss_pred cEEEECCEEEEEeCC
Confidence 345567899999853
No 38
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=44.02 E-value=5.9e+02 Score=29.82 Aligned_cols=66 Identities=23% Similarity=0.388 Sum_probs=39.5
Q ss_pred CeEEEEecCCe-EEEE--ecCCcEEEecCCCCCCCCCC-CCccccccccceeeccCCCCcEEEE-EecCCeEEEEE-cCC
Q 013924 3 QICSVKAGGMM-SLAI--DNAGALWMWGNCPLPDSSTE-GGFSLVSSFTPSPVWDFHGHTVVKV-ACGSEHVVALV-SAG 76 (434)
Q Consensus 3 kI~~Va~G~~h-~~al--t~~G~vy~wG~n~~G~qlg~-g~~~~~~~~~p~~v~~~~~~~I~~V-s~G~~hs~~lt-~~G 76 (434)
.+.++++-..| ++++ .+||.|-.|-.... .|. +......... ..+.++..| .|++.+.+|+. +||
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~---~~~~~s~rS~ltys------~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL---EGEGGSARSELTYS------PEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhh---hcCcceeeeeEEEe------ccCCceEEEEeccCCCeEEEEcCCC
Confidence 45577777777 6665 57899999987653 222 2222222222 245567776 47777777665 456
Q ss_pred C
Q 013924 77 E 77 (434)
Q Consensus 77 ~ 77 (434)
.
T Consensus 1121 ~ 1121 (1431)
T KOG1240|consen 1121 S 1121 (1431)
T ss_pred e
Confidence 4
No 39
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=43.34 E-value=3e+02 Score=26.63 Aligned_cols=139 Identities=19% Similarity=0.216 Sum_probs=73.2
Q ss_pred cCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEecC---CeEEEEEcCCCcccCCCceE
Q 013924 10 GGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS---EHVVALVSAGETYKGEDLVC 86 (434)
Q Consensus 10 G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~---~hs~~lt~~G~vy~~~~~~v 86 (434)
+.-|-++...||.||.=+.... .+|+-+ |. .-+++.+..|. -|.+++..||. .
T Consensus 62 ~ap~dvapapdG~VWft~qg~g--aiGhLd--------P~------tGev~~ypLg~Ga~Phgiv~gpdg~--------~ 117 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTG--AIGHLD--------PA------TGEVETYPLGSGASPHGIVVGPDGS--------A 117 (353)
T ss_pred CCccccccCCCCceEEecCccc--cceecC--------CC------CCceEEEecCCCCCCceEEECCCCC--------e
Confidence 4457788899999997654433 222211 11 11344444332 38888888886 5
Q ss_pred EEeeCC-CCCcCCCCCCCCeecceeeeccCCCCCCcEEEEeecCceEEEEEccCCCCCcCCCeEEEeecC-CCCCCCCCC
Q 013924 87 YSWGAN-NNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG-ENGQLGHGT 164 (434)
Q Consensus 87 y~wG~N-~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n-~~GqLG~g~ 164 (434)
|.+-.. .-+.++....+....|.. .+-+-+.-.+.+++..|+ ||.-|.+ .+|.|....
T Consensus 118 Witd~~~aI~R~dpkt~evt~f~lp------------~~~a~~nlet~vfD~~G~--------lWFt~q~G~yGrLdPa~ 177 (353)
T COG4257 118 WITDTGLAIGRLDPKTLEVTRFPLP------------LEHADANLETAVFDPWGN--------LWFTGQIGAYGRLDPAR 177 (353)
T ss_pred eEecCcceeEEecCcccceEEeecc------------cccCCCcccceeeCCCcc--------EEEeeccccceecCccc
Confidence 554322 222222211111111111 233445556889999999 9988864 345553222
Q ss_pred CCCccccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEE
Q 013924 165 TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSW 205 (434)
Q Consensus 165 ~~~~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~w 205 (434)
..-...|.+ ..+.-.-+++|-||+||.-
T Consensus 178 ~~i~vfpaP-------------qG~gpyGi~atpdGsvwya 205 (353)
T COG4257 178 NVISVFPAP-------------QGGGPYGICATPDGSVWYA 205 (353)
T ss_pred CceeeeccC-------------CCCCCcceEECCCCcEEEE
Confidence 211111111 1344556789999999975
No 40
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=40.63 E-value=65 Score=30.73 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=35.3
Q ss_pred CceEEEEecCCcEEEEeC-CCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcCCCeEEE
Q 013924 190 LFHTSVVSSAGDVWSWGM-EKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 268 (434)
Q Consensus 190 ~~hs~alt~dG~Vy~wG~-n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~~~~~i~~I~~G~~hs~~lt~dG~~vy~ 268 (434)
+.||++.- ++++|.||- |+..|.|.-.-...........| +|.++.+ .+-..|++++-.+ .+|.
T Consensus 80 YGHtvV~y-~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p-~v~G~vP-----------gaRDGHsAcV~gn--~Myi 144 (392)
T KOG4693|consen 80 YGHTVVEY-QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKP-EVEGFVP-----------GARDGHSACVWGN--QMYI 144 (392)
T ss_pred cCceEEEE-cceEEEEcCccCcccccceeeeecccccccccc-ceeeecC-----------CccCCceeeEECc--EEEE
Confidence 46777665 458999985 44566654322111111112222 2222111 1345788888755 7999
Q ss_pred Ee
Q 013924 269 WG 270 (434)
Q Consensus 269 wG 270 (434)
+|
T Consensus 145 FG 146 (392)
T KOG4693|consen 145 FG 146 (392)
T ss_pred ec
Confidence 98
No 41
>PHA03098 kelch-like protein; Provisional
Probab=40.10 E-value=3.3e+02 Score=28.49 Aligned_cols=17 Identities=6% Similarity=0.186 Sum_probs=11.7
Q ss_pred eEEEEecCCcEEEecCCC
Q 013924 13 MSLAIDNAGALWMWGNCP 30 (434)
Q Consensus 13 h~~alt~~G~vy~wG~n~ 30 (434)
|+++. -+|+||.+|...
T Consensus 336 ~~~~~-~~~~lyv~GG~~ 352 (534)
T PHA03098 336 PGVTV-FNNRIYVIGGIY 352 (534)
T ss_pred ceEEE-ECCEEEEEeCCC
Confidence 44443 478999999654
No 42
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=39.63 E-value=4.7e+02 Score=27.40 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=15.4
Q ss_pred cEEEEeecCceEEEEEccCC
Q 013924 121 AVYEVTCGSFHTALLTHRKR 140 (434)
Q Consensus 121 ~I~~Is~G~~ht~~Lt~~G~ 140 (434)
+-.-|.||..|-.+.+-.|.
T Consensus 213 ~nliit~Gk~H~~Fw~~~~~ 232 (626)
T KOG2106|consen 213 PNLIITCGKGHLYFWTLRGG 232 (626)
T ss_pred CcEEEEeCCceEEEEEccCC
Confidence 34678999999888876665
No 43
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=36.50 E-value=2.9e+02 Score=30.90 Aligned_cols=63 Identities=19% Similarity=0.160 Sum_probs=44.7
Q ss_pred CcEEEEEecCCeEEEEEcCCCcccCCCceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEeecCceEEEEE
Q 013924 57 HTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLT 136 (434)
Q Consensus 57 ~~I~~Vs~G~~hs~~lt~~G~vy~~~~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt 136 (434)
..|+.|+|+....++.|+.|.+ +||+-|- .|..|..+.. +++.++ |..+++++
T Consensus 525 E~~~~V~~t~~~Vav~TS~~~l------RvFt~gG---------------vq~~I~t~~g----P~vtaa-g~~d~L~i- 577 (933)
T KOG1274|consen 525 ESIEAVAATSGWVAVATSLGYL------RVFTIGG---------------VQREIFTLPG----PVVTAA-GFEDSLAI- 577 (933)
T ss_pred CceeEEEccCcEEEEEeccceE------EEEEecc---------------eeeeEeeccc----ceEEee-cccceEEE-
Confidence 6899999999999999999964 5777662 3555554432 466555 66666666
Q ss_pred ccCCCCCcCCCeEEEeecCCCC
Q 013924 137 HRKRPNDMLESMCWTFGLGENG 158 (434)
Q Consensus 137 ~~G~~~~~~~~~vy~wG~n~~G 158 (434)
||..|...+|
T Consensus 578 ------------v~h~s~~~~~ 587 (933)
T KOG1274|consen 578 ------------VYHSSKRFYG 587 (933)
T ss_pred ------------EEecCCCCCc
Confidence 6777766666
No 44
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=33.96 E-value=51 Score=27.45 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=28.8
Q ss_pred HhhhhccchhHHH--HHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 013924 386 NMLESADRSKLVR--LERFYRNMLAGVKDKLMKRRIQEIVNECLH 428 (434)
Q Consensus 386 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
..++++|..+|+| ++.||+.+..- +.|.+|++.|..
T Consensus 58 ~l~~~~d~~~LT~~Qi~Yl~~~~~~n-------~~I~~Il~~~vd 95 (122)
T PF06648_consen 58 NLFGAVDGLKLTRSQIDYLYNRVYNN-------RYIINILQKFVD 95 (122)
T ss_pred HHHhcccHhhcCHHHHHHHHHHHHcc-------HHHHHHHHHHhc
Confidence 3457899899999 99999887654 778888888765
No 45
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=33.56 E-value=3.1 Score=42.74 Aligned_cols=75 Identities=29% Similarity=0.401 Sum_probs=51.4
Q ss_pred hhcccccceeec---------cccCc-cCCcccccccccccc-hHHHHHHhhhhccchhHHH-HHHHHHHHHhhhhHHHH
Q 013924 348 RYASILHGSIFG---------KPFAA-EQDIPISLKDMGFFD-ITKEWENMLESADRSKLVR-LERFYRNMLAGVKDKLM 415 (434)
Q Consensus 348 ~~g~~~hgql~~---------~~~~~-~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 415 (434)
.||.|+||=-|. ++|.- ...+-.-|--.++|+ -.+.|......+..-.|.| |+||--|=+-.|||++|
T Consensus 210 ~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaim 289 (842)
T KOG0469|consen 210 GFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIM 289 (842)
T ss_pred eeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccCccCCcccccccccccCccccceeEEeechHHHHHHHHh
Confidence 789999995544 22310 112222344566776 5677877776667767777 99999999999999999
Q ss_pred HHHHHHH
Q 013924 416 KRRIQEI 422 (434)
Q Consensus 416 ~~~~~~~ 422 (434)
--+-.||
T Consensus 290 N~kkeei 296 (842)
T KOG0469|consen 290 NFKKEEI 296 (842)
T ss_pred hccHHHH
Confidence 8776554
No 46
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=33.31 E-value=65 Score=18.97 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=15.7
Q ss_pred CeEEEEecCCcEEEecCCCC
Q 013924 12 MMSLAIDNAGALWMWGNCPL 31 (434)
Q Consensus 12 ~h~~alt~~G~vy~wG~n~~ 31 (434)
-|.++++++|+||..-.+.+
T Consensus 4 P~gvav~~~g~i~VaD~~n~ 23 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNH 23 (28)
T ss_dssp EEEEEEETTSEEEEEECCCT
T ss_pred CcEEEEeCCCCEEEEECCCC
Confidence 36788999999999876544
No 47
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=30.92 E-value=49 Score=21.99 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=12.3
Q ss_pred CceEEEEecCCcEEEEeCC
Q 013924 190 LFHTSVVSSAGDVWSWGME 208 (434)
Q Consensus 190 ~~hs~alt~dG~Vy~wG~n 208 (434)
..|+++...+++||.+|-.
T Consensus 3 ~~h~~~~~~~~~i~v~GG~ 21 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGGR 21 (49)
T ss_dssp BS-EEEEE-TTEEEEE--E
T ss_pred ceEEEEEEeCCeEEEECCC
Confidence 3688888888999999843
No 48
>PHA02713 hypothetical protein; Provisional
Probab=29.51 E-value=5.3e+02 Score=27.42 Aligned_cols=13 Identities=8% Similarity=0.000 Sum_probs=9.9
Q ss_pred EecCCcEEEEeCC
Q 013924 196 VSSAGDVWSWGME 208 (434)
Q Consensus 196 lt~dG~Vy~wG~n 208 (434)
+.-+|.+|+.|-.
T Consensus 395 ~~~~g~IYviGG~ 407 (557)
T PHA02713 395 CVLDQYIYIIGGR 407 (557)
T ss_pred EEECCEEEEEeCC
Confidence 3457999999854
No 49
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=29.13 E-value=2e+02 Score=26.74 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=36.2
Q ss_pred EEEecCCcEEEEeCCC-CCCCCCCCCC--CCCCCCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcCCCeEEEEe
Q 013924 194 SVVSSAGDVWSWGMEK-GLGLCPNASL--TRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG 270 (434)
Q Consensus 194 ~alt~dG~Vy~wG~n~-~lG~~~~~~~--~~~~~~~~~~P~~i~~~~~~~~~~~~i~~I~~G~~hs~~lt~dG~~vy~wG 270 (434)
++.--.|.+|+-|+|+ -+..|..... ..........|-.+-. +-.+-.-|.-.+.+...+| ++.+-|
T Consensus 38 v~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~---------kr~khhkgsiyc~~ws~~g-eliatg 107 (350)
T KOG0641|consen 38 VAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLC---------KRNKHHKGSIYCTAWSPCG-ELIATG 107 (350)
T ss_pred EEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEe---------eeccccCccEEEEEecCcc-CeEEec
Confidence 3455789999999997 2333221111 1011111112211111 0012233556677888888 888888
Q ss_pred CCCC
Q 013924 271 RGRS 274 (434)
Q Consensus 271 ~n~~ 274 (434)
+|++
T Consensus 108 sndk 111 (350)
T KOG0641|consen 108 SNDK 111 (350)
T ss_pred CCCc
Confidence 8775
No 50
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=28.44 E-value=9.4e+02 Score=27.52 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=24.0
Q ss_pred CcEEEEEecCCe--EEEEEcCCCcccCCCceEEEeeCC
Q 013924 57 HTVVKVACGSEH--VVALVSAGETYKGEDLVCYSWGAN 92 (434)
Q Consensus 57 ~~I~~Vs~G~~h--s~~lt~~G~vy~~~~~~vy~wG~N 92 (434)
..|.+|+.+..+ .++++.+|.++ +|.|-..
T Consensus 427 ~~v~~vaf~~~~~~~avl~~d~~l~------~~~~~~~ 458 (928)
T PF04762_consen 427 SPVNDVAFSPSNSRFAVLTSDGSLS------IYEWDLK 458 (928)
T ss_pred CCcEEEEEeCCCCeEEEEECCCCEE------EEEecCC
Confidence 479999998888 78999999764 7777554
No 51
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=27.63 E-value=5.4e+02 Score=24.49 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=38.2
Q ss_pred EEEEeecCc--eEEEEEccCCCCCcCCCeEEEeecCCCCCCCCCCCCCccccEEeeeCCCcceEEEEEecCceE--EEEe
Q 013924 122 VYEVTCGSF--HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHT--SVVS 197 (434)
Q Consensus 122 I~~Is~G~~--ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~~I~~I~~G~~hs--~alt 197 (434)
|..|..--+ |-+.-+++|+ |+.|-..+. .-.....|.. ...|.+++..+.-+ ++.+
T Consensus 127 Vn~vvlhpnQteLis~dqsg~--------irvWDl~~~------~c~~~liPe~------~~~i~sl~v~~dgsml~a~n 186 (311)
T KOG0315|consen 127 VNTVVLHPNQTELISGDQSGN--------IRVWDLGEN------SCTHELIPED------DTSIQSLTVMPDGSMLAAAN 186 (311)
T ss_pred cceEEecCCcceEEeecCCCc--------EEEEEccCC------ccccccCCCC------CcceeeEEEcCCCcEEEEec
Confidence 444444443 3444466777 999964321 1111222222 23466777776655 4668
Q ss_pred cCCcEEEEeCCC
Q 013924 198 SAGDVWSWGMEK 209 (434)
Q Consensus 198 ~dG~Vy~wG~n~ 209 (434)
+.|+.|+|-.-.
T Consensus 187 nkG~cyvW~l~~ 198 (311)
T KOG0315|consen 187 NKGNCYVWRLLN 198 (311)
T ss_pred CCccEEEEEccC
Confidence 899999998643
No 52
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=27.56 E-value=7.8e+02 Score=26.31 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=14.2
Q ss_pred EEecCceeEEEEcCCCeEEEEeC
Q 013924 249 VACGAAHTVLVTDDGYKLWSWGR 271 (434)
Q Consensus 249 I~~G~~hs~~lt~dG~~vy~wG~ 271 (434)
+.....+.-+..-++ ++|+-|-
T Consensus 509 m~~~rs~~g~~~~~~-~ly~vGG 530 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGG-KLYAVGG 530 (571)
T ss_pred CccccccccEEEECC-EEEEEec
Confidence 334555555555577 9999985
No 53
>PF07340 Herpes_IE1: Cytomegalovirus IE1 protein; InterPro: IPR010855 Expression from a human cytomegalovirus early promoter (E1.7) has been shown to be activated in trans by the IE2 gene product. Although the IE1 gene product alone had no effect on this early viral promoter, maximal early promoter activity was detected when both IE1 and IE2 gene products were present []. The IE1 protein from cytomegalovirus is also known as UL123.; GO: 0050792 regulation of viral reproduction, 0042025 host cell nucleus
Probab=26.98 E-value=45 Score=33.09 Aligned_cols=16 Identities=50% Similarity=0.748 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhc
Q 013924 413 KLMKRRIQEIVNECLH 428 (434)
Q Consensus 413 ~~~~~~~~~~~~~~~~ 428 (434)
++|++||++|++||+.
T Consensus 338 ~~M~~Ki~~I~~e~~a 353 (392)
T PF07340_consen 338 KIMKPKIRAIVNEMFA 353 (392)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4689999999999875
No 54
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=25.45 E-value=7.4e+02 Score=25.33 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=20.2
Q ss_pred eEEEEEecCceEEEE--ecCCcEEEEeCCC
Q 013924 182 YLVSVDCGLFHTSVV--SSAGDVWSWGMEK 209 (434)
Q Consensus 182 ~I~~I~~G~~hs~al--t~dG~Vy~wG~n~ 209 (434)
-|.+...|.+-+++. ++|++||.|-.-.
T Consensus 442 iIrSCFgg~~~~fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 442 IIRSCFGGGNDKFIASGSEDSKVYIWHRIS 471 (519)
T ss_pred EEEeccCCCCcceEEecCCCceEEEEEccC
Confidence 355666666666666 5799999998654
No 55
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=25.21 E-value=1.2e+02 Score=23.33 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=22.4
Q ss_pred ceEEEEEec-CceEEEEecCCcEEEEeCCC
Q 013924 181 VYLVSVDCG-LFHTSVVSSAGDVWSWGMEK 209 (434)
Q Consensus 181 ~~I~~I~~G-~~hs~alt~dG~Vy~wG~n~ 209 (434)
..=..|+|. ....++|+.||.+|+-|.-+
T Consensus 16 ~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~ 45 (81)
T PF03785_consen 16 QTSISVSCDVPGSYVALSQDGDLYGKAIVN 45 (81)
T ss_dssp -SEEEEEESSTT-EEEEEETTEEEEEEE-B
T ss_pred ccEEEEEecCCCcEEEEecCCEEEEEEEec
Confidence 345689999 88899999999999988644
No 56
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=22.33 E-value=1.6e+02 Score=22.55 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=25.7
Q ss_pred CcEEEEec-CceeEEEEcCCCeEEEEeCCCCCCCC
Q 013924 245 DPVQVACG-AAHTVLVTDDGYKLWSWGRGRSGVLG 278 (434)
Q Consensus 245 ~i~~I~~G-~~hs~~lt~dG~~vy~wG~n~~GqLG 278 (434)
.=..|+|. ....++|++|| .+|+-|--+.|.+=
T Consensus 17 tS~~Vs~~~~gs~ValS~dg-~l~G~ai~~sG~at 50 (81)
T PF03785_consen 17 TSISVSCDVPGSYVALSQDG-DLYGKAIVNSGNAT 50 (81)
T ss_dssp SEEEEEESSTT-EEEEEETT-EEEEEEE-BTTEEE
T ss_pred cEEEEEecCCCcEEEEecCC-EEEEEEEecCceEE
Confidence 44679999 88899999999 99999976576654
No 57
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=22.16 E-value=7.3e+02 Score=24.09 Aligned_cols=108 Identities=20% Similarity=0.236 Sum_probs=57.5
Q ss_pred ecCCeEEEEEcCCCcccCCCceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEeecC---ceEEEEEccCC
Q 013924 64 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGS---FHTALLTHRKR 140 (434)
Q Consensus 64 ~G~~hs~~lt~~G~vy~~~~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~---~ht~~Lt~~G~ 140 (434)
-+.-|.++...+|. ||--+. ..|.+|+=+... .+++.+..|. -|.+++..||.
T Consensus 61 G~ap~dvapapdG~--------VWft~q-g~gaiGhLdP~t---------------Gev~~ypLg~Ga~Phgiv~gpdg~ 116 (353)
T COG4257 61 GSAPFDVAPAPDGA--------VWFTAQ-GTGAIGHLDPAT---------------GEVETYPLGSGASPHGIVVGPDGS 116 (353)
T ss_pred CCCccccccCCCCc--------eEEecC-ccccceecCCCC---------------CceEEEecCCCCCCceEEECCCCC
Confidence 45558888888995 554332 234444321111 1344444433 57788888887
Q ss_pred CCCcCCCeEEEeecCC-CCCCCCCCCCCccccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEEeCCCCCCC
Q 013924 141 PNDMLESMCWTFGLGE-NGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGL 213 (434)
Q Consensus 141 ~~~~~~~~vy~wG~n~-~GqLG~g~~~~~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~~lG~ 213 (434)
.|.+-.+. -+.++.........|.+ .+-+-+.-.+.+++..|.||.-|.+..+|.
T Consensus 117 --------~Witd~~~aI~R~dpkt~evt~f~lp----------~~~a~~nlet~vfD~~G~lWFt~q~G~yGr 172 (353)
T COG4257 117 --------AWITDTGLAIGRLDPKTLEVTRFPLP----------LEHADANLETAVFDPWGNLWFTGQIGAYGR 172 (353)
T ss_pred --------eeEecCcceeEEecCcccceEEeecc----------cccCCCcccceeeCCCccEEEeecccccee
Confidence 88774432 12222111111111111 122334456789999999999998876664
No 58
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=21.86 E-value=1.8e+02 Score=19.08 Aligned_cols=30 Identities=33% Similarity=0.540 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhhhHHH--HHHHHHHHHHHhhc
Q 013924 399 LERFYRNMLAGVKDKL--MKRRIQEIVNECLH 428 (434)
Q Consensus 399 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 428 (434)
|+.|....|.-|+-.| ||..|-|-+++-|.
T Consensus 5 le~~KqEIL~EvrkEl~K~K~EIIeA~~~eL~ 36 (40)
T PF08776_consen 5 LERLKQEILEEVRKELQKVKEEIIEAIRQELS 36 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777777777665 44445555555443
No 59
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=21.02 E-value=1.9e+02 Score=24.58 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=38.4
Q ss_pred EEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEcCCCcccCCCceEEEeeCCCCCc
Q 013924 23 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQ 96 (434)
Q Consensus 23 vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy~~~~~~vy~wG~N~~GQ 96 (434)
|-.||..+. +||..+.+......+.. ..+...|-++-.|-...|.++. .|.+-|+|.+.+
T Consensus 20 VrGFGRGsk--eLGiPTAN~~~~~v~~l--------~~~l~~GvYfG~A~v~~~~v~k----MvmSIGwNP~Y~ 79 (153)
T KOG3110|consen 20 VRGFGRGSK--ELGIPTANFPENVVPKL--------PEDLPSGVYFGWAHVDKGDVFK----MVMSIGWNPYYK 79 (153)
T ss_pred EEecCCCcc--ccCCccCCCCHHHHhcc--------cccCCCceEEEeeeecCCCcee----EEEEcccCcccC
Confidence 446666665 77766544333333322 3455578888888888887665 688999998754
Done!