AmiGO: BLAST Results


BLAST match view associations BLAST with RBP-DR1 RBP-DR1 RBP-DR1 AT4G03110	protein from Arabidopsis thaliana	1.2e-143
BLAST match view associations BLAST with BRN2 BRN2 BRN2 AT1G03457	protein from Arabidopsis thaliana	9.7e-96
BLAST match view associations BLAST with bru-2 bru-2 bru-2 bruno-2	protein from Drosophila melanogaster	4.0e-64
BLAST match view associations BLAST with celf1 celf1 celf1 cugbp, Elav-like family member 1	gene_product from Danio rerio	7.7e-64
BLAST match view associations BLAST with DDB_G0291486 DDB_G0291486 DDB_G0291486 putative splicing regulator	gene from Dictyostelium discoideum	9.9e-64
BLAST match view associations BLAST with celf3a celf3a celf3a cugbp, Elav-like family member 3a	gene_product from Danio rerio	2.0e-63
BLAST match view associations BLAST with CELF1 CELF1 CELF1 CUGBP Elav-like family member 1	protein from Gallus gallus	2.1e-63
BLAST match view associations BLAST with CELF3 CELF3 CELF3 CUGBP Elav-like family member 3	protein from Bos taurus	8.8e-63
BLAST match view associations BLAST with Celf3 Celf3 Celf3 CUGBP, Elav-like family member 3	protein from Mus musculus	4.8e-62
BLAST match view associations BLAST with celf4 celf4 celf4 CUGBP, Elav-like family member 4	gene_product from Danio rerio	6.1e-62
BLAST match view associations BLAST with tnrc4-b tnrc4-b tnrc4-b CUGBP Elav-like family member 3-B	protein from Xenopus laevis	7.8e-62
BLAST match view associations BLAST with CELF3 CELF3 CELF3 CUGBP Elav-like family member 3	protein from Homo sapiens	7.8e-62
BLAST match view associations BLAST with tnrc4-a tnrc4-a tnrc4-a CUGBP Elav-like family member 3-A	protein from Xenopus laevis	1.6e-61
BLAST match view associations BLAST with CELF3 CELF3 CELF3 CUGBP Elav-like family member 3	protein from Homo sapiens	2.0e-61
BLAST match view associations BLAST with Celf1 Celf1 Celf1 CUGBP, Elav-like family member 1	protein from Mus musculus	2.0e-61
BLAST match view associations BLAST with Celf1 Celf1 Celf1 CUGBP, Elav-like family member 1	gene from Rattus norvegicus	2.0e-61
BLAST match view associations BLAST with CUGBP1 CUGBP1 CUGBP1 CUGBP1 protein	protein from Bos taurus	2.6e-61
BLAST match view associations BLAST with CELF1 CELF1 CELF1 Uncharacterized protein	protein from Canis lupus familiaris	2.6e-61
BLAST match view associations BLAST with CELF1 CELF1 CELF1 CUG triplet repeat, RNA binding protein 1, isoform CRA_c	protein from Homo sapiens	2.6e-61
BLAST match view associations BLAST with CELF1 CELF1 CELF1 CUGBP Elav-like family member 1	protein from Homo sapiens	2.6e-61
BLAST match view associations BLAST with aret aret aret arrest	protein from Drosophila melanogaster	5.4e-61
BLAST match view associations BLAST with CELF1 CELF1 CELF1 CUGBP Elav-like family member 1	protein from Gallus gallus	8.8e-61
BLAST match view associations BLAST with Celf3 Celf3 Celf3 CUGBP, Elav-like family member 3	gene from Rattus norvegicus	1.1e-60
BLAST match view associations BLAST with CELF2 CELF2 CELF2 CUGBP Elav-like family member 2	protein from Gallus gallus	1.1e-60
BLAST match view associations BLAST with CELF2 CELF2 CELF2 CUGBP Elav-like family member 2	protein from Gallus gallus	1.1e-60
BLAST match view associations BLAST with CELF2 CELF2 CELF2 CUGBP Elav-like family member 2	protein from Gallus gallus	1.1e-60
BLAST match view associations BLAST with CELF2 CELF2 CELF2 Uncharacterized protein	protein from Canis lupus familiaris	1.1e-60
BLAST match view associations BLAST with CELF2 CELF2 CELF2 CUGBP Elav-like family member 2	protein from Homo sapiens	1.1e-60
BLAST match view associations BLAST with CELF2 CELF2 CELF2 CUGBP Elav-like family member 2	protein from Homo sapiens	1.1e-60
BLAST match view associations BLAST with CELF2 CELF2 CELF2 CUGBP Elav-like family member 2	protein from Homo sapiens	1.1e-60
BLAST match view associations BLAST with Celf2 Celf2 Celf2 CUGBP, Elav-like family member 2	protein from Mus musculus	1.1e-60
BLAST match view associations BLAST with Celf2 Celf2 Celf2 CUGBP, Elav-like family member 2	gene from Rattus norvegicus	1.1e-60
BLAST match view associations BLAST with celf2 celf2 celf2 cugbp, Elav-like family member 2	gene_product from Danio rerio	2.1e-60
BLAST match view associations BLAST with CELF5 CELF5 CELF5 CUGBP Elav-like family member 5	protein from Homo sapiens	2.3e-60
BLAST match view associations BLAST with CELF2 CELF2 CELF2 CUGBP Elav-like family member 2	protein from Gallus gallus	2.3e-60
BLAST match view associations BLAST with CELF5 CELF5 CELF5 Uncharacterized protein	protein from Canis lupus familiaris	7.8e-60
BLAST match view associations BLAST with CELF1 CELF1 CELF1 CUGBP Elav-like family member 1	protein from Pongo abelii	8.6e-60
BLAST match view associations BLAST with CELF3 CELF3 CELF3 Uncharacterized protein	protein from Canis lupus familiaris	2.7e-59
BLAST match view associations BLAST with CELF3 CELF3 CELF3 Uncharacterized protein	protein from Sus scrofa	4.2e-59
BLAST match view associations BLAST with CELF3 CELF3 CELF3 CUGBP Elav-like family member 3	protein from Homo sapiens	8.8e-59
BLAST match view associations BLAST with celf5 celf5 celf5 cugbp, Elav-like family member 5	gene_product from Danio rerio	2.1e-58
BLAST match view associations BLAST with Celf6 Celf6 Celf6 CUGBP, Elav-like family member 6	protein from Mus musculus	9.6e-57
BLAST match view associations BLAST with Celf6 Celf6 Celf6 CUGBP, Elav-like family member 6	gene from Rattus norvegicus	9.6e-57
BLAST match view associations BLAST with CELF6 CELF6 CELF6 Uncharacterized protein	protein from Canis lupus familiaris	4.8e-56
BLAST match view associations BLAST with CELF6 CELF6 CELF6 Uncharacterized protein	protein from Sus scrofa	5.3e-56
BLAST match view associations BLAST with etr-1 etr-1 etr-1	gene from Caenorhabditis elegans	7.0e-56
BLAST match view associations BLAST with CELF6 CELF6 CELF6 Uncharacterized protein	protein from Bos taurus	8.6e-56
BLAST match view associations BLAST with CELF6 CELF6 CELF6 CUGBP Elav-like family member 6	protein from Homo sapiens	1.1e-55
BLAST match view associations BLAST with celf3b celf3b celf3b cugbp, Elav-like family member 3b	gene_product from Danio rerio	1.6e-55
BLAST match view associations BLAST with unc-75 unc-75 unc-75	gene from Caenorhabditis elegans	2.5e-55
BLAST match view associations BLAST with CELF4 CELF4 CELF4 CUGBP Elav-like family member 4	protein from Homo sapiens	1.4e-54
BLAST match view associations BLAST with Celf4 Celf4 Celf4 CUGBP, Elav-like family member 4	protein from Mus musculus	6.6e-52
BLAST match view associations BLAST with DDB_G0270634 DDB_G0270634 DDB_G0270634 putative splicing regulator	gene from Dictyostelium discoideum	2.0e-51
BLAST match view associations BLAST with CELF5 CELF5 CELF5 Uncharacterized protein	protein from Sus scrofa	3.3e-51
BLAST match view associations BLAST with BRUNOL6 BRUNOL6 BRUNOL6 Uncharacterized protein	protein from Gallus gallus	2.7e-49
BLAST match view associations BLAST with bru-3 bru-3 bru-3 bruno-3	protein from Drosophila melanogaster	6.0e-45
BLAST match view associations BLAST with F1MD42 F1MD42 F1MD42 Uncharacterized protein	protein from Bos taurus	7.4e-45
BLAST match view associations BLAST with CELF4 CELF4 CELF4 Uncharacterized protein	protein from Gallus gallus	4.7e-44
BLAST match view associations BLAST with BRUNOL6 BRUNOL6 BRUNOL6 Uncharacterized protein	protein from Gallus gallus	2.0e-43
BLAST match view associations BLAST with Celf4 Celf4 Celf4 CUGBP, Elav-like family member 4	gene from Rattus norvegicus	2.0e-43
BLAST match view associations BLAST with LOC100851458 LOC100851458 LOC100851458 Uncharacterized protein	protein from Bos taurus	2.1e-43
BLAST match view associations BLAST with CELF2 CELF2 CELF2 cDNA FLJ51739, highly similar to Homo sapiens CUG triplet repeat, RNA binding protein 2 (CUGBP2), transcript variant 2, mRNA	protein from Homo sapiens	3.4e-43
BLAST match view associations BLAST with BRUNOL4 BRUNOL4 BRUNOL4 BRUNOL4 protein	protein from Bos taurus	2.0e-40
BLAST match view associations BLAST with CELF4 CELF4 CELF4 CUGBP Elav-like family member 4	protein from Macaca fascicularis	2.6e-40
BLAST match view associations BLAST with P0415D04.46-1 P0415D04.46-1 P0415D04.46-1 FCA gamma protein	protein from Oryza sativa Japonica Group	5.5e-40
BLAST match view associations BLAST with Q6WQT6 Q6WQT6 Q6WQT6 Flowering time control protein isoform OsFCA-1	protein from Oryza sativa Indica Group	5.5e-40
BLAST match view associations BLAST with CELF4 CELF4 CELF4 CUGBP Elav-like family member 4	protein from Homo sapiens	5.5e-38
BLAST match view associations BLAST with CELF4 CELF4 CELF4 CUGBP Elav-like family member 4	protein from Pongo abelii	5.5e-38
BLAST match view associations BLAST with CELF4 CELF4 CELF4 Uncharacterized protein	protein from Sus scrofa	2.3e-36
BLAST match view associations BLAST with CELF6 CELF6 CELF6 cDNA FLJ42868 fis, clone BRHIP2021615, highly similar to Homo sapiens bruno-like 6, RNA binding protein, mRNA	protein from Homo sapiens	2.7e-36
BLAST match view associations BLAST with Celf5 Celf5 Celf5 CUGBP, Elav-like family member 5	gene from Rattus norvegicus	1.1e-34
BLAST match view associations BLAST with CELF1 CELF1 CELF1 Uncharacterized protein	protein from Sus scrofa	3.8e-33
BLAST match view associations BLAST with H9L0T2 H9L0T2 H9L0T2 Uncharacterized protein	protein from Gallus gallus	9.1e-29
BLAST match view associations BLAST with TNRC4 TNRC4 TNRC4 Trinucleotide repeat containing 4	protein from Bos taurus	8.4e-26
BLAST match view associations BLAST with celf4 celf4 celf4 CUGBP Elav-like family member 4	protein from Xenopus (Silurana) tropicalis	8.7e-25
BLAST match view associations BLAST with CELF2 CELF2 CELF2 Uncharacterized protein	protein from Sus scrofa	4.2e-24
BLAST match view associations BLAST with CELF3 CELF3 CELF3 CUGBP Elav-like family member 3	protein from Homo sapiens	3.6e-22
BLAST match view associations BLAST with CELF4 CELF4 CELF4 CUGBP Elav-like family member 4	protein from Homo sapiens	3.6e-22
BLAST match view associations BLAST with CELF1 CELF1 CELF1 CUGBP Elav-like family member 1	protein from Gallus gallus	1.1e-21
BLAST match view associations BLAST with MAL8P1.40 MAL8P1.40 MAL8P1.40 RNA-binding protein, putative	gene from Plasmodium falciparum	1.7e-21
BLAST match view associations BLAST with MAL8P1.40 MAL8P1.40 MAL8P1.40 RNA binding protein, putative	protein from Plasmodium falciparum 3D7	1.7e-21
BLAST match view associations BLAST with CELF2 CELF2 CELF2 CUGBP Elav-like family member 2	protein from Gallus gallus	2.1e-21
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 ELAV (Embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	protein from Bos taurus	9.2e-21
BLAST match view associations BLAST with AT2G47310 AT2G47310 AT2G47310	protein from Arabidopsis thaliana	2.5e-20
BLAST match view associations BLAST with CELF4 CELF4 CELF4 CUGBP Elav-like family member 4	protein from Homo sapiens	2.9e-20
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 ELAV-like 1 (Hu antigen R)	protein from Sus scrofa	4.8e-20
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 ELAV-like protein 1	protein from Homo sapiens	6.1e-20
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 Uncharacterized protein	protein from Canis lupus familiaris	7.9e-20
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 Uncharacterized protein	protein from Gallus gallus	1.1e-19
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 cDNA FLJ60076, highly similar to ELAV-like protein 1	protein from Homo sapiens	1.3e-19
BLAST match view associations BLAST with elavl3 elavl3 elavl3 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	gene_product from Danio rerio	1.4e-19
BLAST match view associations BLAST with Elavl1 Elavl1 Elavl1 ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein from Mus musculus	2.0e-19
BLAST match view associations BLAST with Elavl1 Elavl1 Elavl1 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	gene from Rattus norvegicus	2.0e-19
BLAST match view associations BLAST with elavl1-b elavl1-b elavl1-b ELAV-like protein 1-B	protein from Xenopus laevis	1.2e-18
BLAST match view associations BLAST with CELF5 CELF5 CELF5 cDNA FLJ52259, highly similar to Homo sapiens bruno-like 5, RNA binding protein, mRNA	protein from Homo sapiens	1.3e-18
BLAST match view associations BLAST with Elavl3 Elavl3 Elavl3 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	protein from Mus musculus	1.3e-18
BLAST match view associations BLAST with Elavl3 Elavl3 Elavl3 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	gene from Rattus norvegicus	1.3e-18
BLAST match view associations BLAST with ELAVL2 ELAVL2 ELAVL2 ELAV-like protein 2	protein from Homo sapiens	1.8e-18
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  013926
        (434 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2139340 - symbol:RBP-DR1 "RNA-binding protein-...  1404  1.2e-143  1
TAIR|locus:2825067 - symbol:BRN2 "Bruno-like 2" species:3...   952  9.7e-96   1
FB|FBgn0262475 - symbol:bru-2 "bruno-2" species:7227 "Dro...   430  4.0e-64   2
ZFIN|ZDB-GENE-000501-1 - symbol:celf1 "cugbp, Elav-like f...   394  7.7e-64   2
DICTYBASE|DDB_G0291486 - symbol:DDB_G0291486 "putative sp...   430  9.9e-64   2
ZFIN|ZDB-GENE-000501-2 - symbol:celf3a "cugbp, Elav-like ...   400  2.0e-63   2
UNIPROTKB|F1ND14 - symbol:CELF1 "CUGBP Elav-like family m...   363  2.1e-63   3
UNIPROTKB|Q08E07 - symbol:CELF3 "CUGBP Elav-like family m...   389  8.8e-63   2
MGI|MGI:1926034 - symbol:Celf3 "CUGBP, Elav-like family m...   388  4.8e-62   2
ZFIN|ZDB-GENE-040718-300 - symbol:celf4 "CUGBP, Elav-like...   390  6.1e-62   2
UNIPROTKB|Q7ZWM3 - symbol:tnrc4-b "CUGBP Elav-like family...   390  7.8e-62   2
UNIPROTKB|Q5SZQ8 - symbol:CELF3 "CUGBP Elav-like family m...   389  7.8e-62   2
UNIPROTKB|Q91579 - symbol:tnrc4-a "CUGBP Elav-like family...   388  1.6e-61   2
UNIPROTKB|Q5SZQ7 - symbol:CELF3 "CUGBP Elav-like family m...   389  2.0e-61   2
MGI|MGI:1342295 - symbol:Celf1 "CUGBP, Elav-like family m...   367  2.0e-61   2
RGD|1307721 - symbol:Celf1 "CUGBP, Elav-like family membe...   367  2.0e-61   2
UNIPROTKB|Q4QQT3 - symbol:Celf1 "CUGBP Elav-like family m...   367  2.0e-61   2
UNIPROTKB|A7MB95 - symbol:CUGBP1 "Uncharacterized protein...   366  2.6e-61   2
UNIPROTKB|E2R8F6 - symbol:CELF1 "Uncharacterized protein"...   366  2.6e-61   2
UNIPROTKB|G5EA30 - symbol:CELF1 "CUG triplet repeat, RNA ...   366  2.6e-61   2
UNIPROTKB|Q92879 - symbol:CELF1 "CUGBP Elav-like family m...   366  2.6e-61   2
FB|FBgn0000114 - symbol:aret "arrest" species:7227 "Droso...   402  5.4e-61   2
UNIPROTKB|Q5F3T7 - symbol:CELF1 "CUGBP Elav-like family m...   363  8.8e-61   2
RGD|1563168 - symbol:Celf3 "CUGBP, Elav-like family membe...   389  1.1e-60   2
UNIPROTKB|E1C045 - symbol:CELF2 "CUGBP Elav-like family m...   363  1.1e-60   2
UNIPROTKB|F1NZY6 - symbol:CELF2 "CUGBP Elav-like family m...   363  1.1e-60   2
UNIPROTKB|F1P017 - symbol:CELF2 "CUGBP Elav-like family m...   363  1.1e-60   2
UNIPROTKB|F1P674 - symbol:CELF2 "Uncharacterized protein"...   363  1.1e-60   2
UNIPROTKB|E9PC62 - symbol:CELF2 "CUGBP Elav-like family m...   363  1.1e-60   2
UNIPROTKB|O95319 - symbol:CELF2 "CUGBP Elav-like family m...   363  1.1e-60   2
UNIPROTKB|Q5VZZ6 - symbol:CELF2 "CUGBP Elav-like family m...   363  1.1e-60   2
MGI|MGI:1338822 - symbol:Celf2 "CUGBP, Elav-like family m...   363  1.1e-60   2
RGD|68347 - symbol:Celf2 "CUGBP, Elav-like family member ...   363  1.1e-60   2
ZFIN|ZDB-GENE-030826-35 - symbol:celf2 "cugbp, Elav-like ...   369  2.1e-60   2
UNIPROTKB|Q8N6W0 - symbol:CELF5 "CUGBP Elav-like family m...   376  2.3e-60   2
UNIPROTKB|Q7T2T1 - symbol:CELF2 "CUGBP Elav-like family m...   360  2.3e-60   2
UNIPROTKB|F1PXQ8 - symbol:CELF5 "Uncharacterized protein"...   369  7.8e-60   2
UNIPROTKB|Q5R995 - symbol:CELF1 "CUGBP Elav-like family m...   352  8.6e-60   2
UNIPROTKB|E2RGA8 - symbol:CELF3 "Uncharacterized protein"...   361  2.7e-59   2
UNIPROTKB|F1ST15 - symbol:CELF3 "Uncharacterized protein"...   361  4.2e-59   2
UNIPROTKB|H0Y623 - symbol:CELF3 "CUGBP Elav-like family m...   360  8.8e-59   2
ZFIN|ZDB-GENE-050208-746 - symbol:celf5 "cugbp, Elav-like...   370  2.1e-58   2
MGI|MGI:1923433 - symbol:Celf6 "CUGBP, Elav-like family m...   584  9.6e-57   1
RGD|1310451 - symbol:Celf6 "CUGBP, Elav-like family membe...   584  9.6e-57   1
UNIPROTKB|E2RJG5 - symbol:CELF6 "Uncharacterized protein"...   312  4.8e-56   2
UNIPROTKB|F1SHM1 - symbol:CELF6 "Uncharacterized protein"...   577  5.3e-56   1
WB|WBGene00001340 - symbol:etr-1 species:6239 "Caenorhabd...   344  7.0e-56   2
UNIPROTKB|E1B8K2 - symbol:CELF6 "Uncharacterized protein"...   575  8.6e-56   1
UNIPROTKB|Q96J87 - symbol:CELF6 "CUGBP Elav-like family m...   574  1.1e-55   1
ZFIN|ZDB-GENE-110408-50 - symbol:celf3b "cugbp, Elav-like...   339  1.6e-55   2
WB|WBGene00006807 - symbol:unc-75 species:6239 "Caenorhab...   344  2.5e-55   2
UNIPROTKB|B4DHA8 - symbol:CELF4 "CUGBP Elav-like family m...   390  1.4e-54   2
MGI|MGI:1932407 - symbol:Celf4 "CUGBP, Elav-like family m...   367  6.6e-52   3
DICTYBASE|DDB_G0270634 - symbol:DDB_G0270634 "putative sp...   365  2.0e-51   2
UNIPROTKB|F1S8E8 - symbol:CELF5 "Uncharacterized protein"...   287  3.3e-51   2
UNIPROTKB|F1NXF6 - symbol:BRUNOL6 "Uncharacterized protei...   339  2.7e-49   3
FB|FBgn0264001 - symbol:bru-3 "bruno-3" species:7227 "Dro...   277  6.0e-45   2
UNIPROTKB|F1MD42 - symbol:F1MD42 "Uncharacterized protein...   266  7.4e-45   2
UNIPROTKB|F1NYP4 - symbol:CELF4 "Uncharacterized protein"...   266  4.7e-44   2
UNIPROTKB|F1P5J4 - symbol:BRUNOL6 "Uncharacterized protei...   266  2.0e-43   2
RGD|1307630 - symbol:Celf4 "CUGBP, Elav-like family membe...   262  2.0e-43   2
UNIPROTKB|E1BIM7 - symbol:LOC100851458 "Uncharacterized p...   276  2.1e-43   2
UNIPROTKB|B4DIB6 - symbol:CELF2 "cDNA FLJ51739, highly si...   276  3.4e-43   2
UNIPROTKB|A6H776 - symbol:BRUNOL4 "Uncharacterized protei...   430  2.0e-40   1
UNIPROTKB|Q4R535 - symbol:CELF4 "CUGBP Elav-like family m...   429  2.6e-40   1
UNIPROTKB|Q6K271 - symbol:P0415D04.46-1 "FCA" species:399...   395  5.5e-40   2
UNIPROTKB|Q6WQT6 - symbol:Q6WQT6 "Flowering time control ...   395  5.5e-40   2
UNIPROTKB|Q9BZC1 - symbol:CELF4 "CUGBP Elav-like family m...   407  5.5e-38   1
UNIPROTKB|Q5NVC8 - symbol:CELF4 "CUGBP Elav-like family m...   407  5.5e-38   1
UNIPROTKB|F1SAI1 - symbol:CELF4 "Uncharacterized protein"...   232  2.3e-36   2
UNIPROTKB|B3KWE6 - symbol:BRUNOL6 "cDNA FLJ42868 fis, clo...   391  2.7e-36   1
RGD|1565016 - symbol:Celf5 "CUGBP, Elav-like family membe...   376  1.1e-34   1
UNIPROTKB|F1SID9 - symbol:CELF1 "Uncharacterized protein"...   266  3.8e-33   2
UNIPROTKB|H9L0T2 - symbol:H9L0T2 "Uncharacterized protein...   320  9.1e-29   1
UNIPROTKB|A1L544 - symbol:TNRC4 "Trinucleotide repeat con...   292  8.4e-26   1
UNIPROTKB|Q0V9L3 - symbol:celf4 "CUGBP Elav-like family m...   183  8.7e-25   3
UNIPROTKB|F1RUN0 - symbol:CELF2 "Uncharacterized protein"...   276  4.2e-24   1
UNIPROTKB|B4DQL3 - symbol:CELF3 "CUGBP Elav-like family m...   258  3.6e-22   1
UNIPROTKB|K7EJD7 - symbol:CELF4 "CUGBP Elav-like family m...   258  3.6e-22   1
UNIPROTKB|F1M3I9 - symbol:Brunol4 "Protein Brunol4" speci...   213  6.0e-22   2
UNIPROTKB|F1P311 - symbol:CELF1 "CUGBP Elav-like family m...   199  1.1e-21   2
GENEDB_PFALCIPARUM|MAL8P1.40 - symbol:MAL8P1.40 "RNA-bind...   174  1.7e-21   2
UNIPROTKB|Q8IB66 - symbol:MAL8P1.40 "RNA binding protein,...   174  1.7e-21   2
UNIPROTKB|F1P022 - symbol:CELF2 "CUGBP Elav-like family m...   198  2.1e-21   2
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,...   205  9.2e-21   2
TAIR|locus:2065190 - symbol:AT2G47310 species:3702 "Arabi...   261  2.5e-20   1
UNIPROTKB|K7EQ97 - symbol:CELF4 "CUGBP Elav-like family m...   242  2.9e-20   1
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,...   199  4.8e-20   2
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp...   199  6.1e-20   2
UNIPROTKB|F1PSC4 - symbol:ELAVL1 "Uncharacterized protein...   199  7.9e-20   2
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein...   197  1.1e-19   2
UNIPROTKB|B4DVB8 - symbol:ELAVL1 "ELAV-like protein 1" sp...   199  1.3e-19   2
ZFIN|ZDB-GENE-980526-76 - symbol:elavl3 "ELAV (embryonic ...   185  1.4e-19   2
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ...   195  2.0e-19   2
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno...   195  2.0e-19   2
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B...   189  1.2e-18   2
UNIPROTKB|B4DFI3 - symbol:CELF5 "CUGBP Elav-like family m...   233  1.3e-18   1
MGI|MGI:109157 - symbol:Elavl3 "ELAV (embryonic lethal, a...   187  1.3e-18   2
RGD|628892 - symbol:Elavl3 "ELAV (embryonic lethal, abnor...   187  1.3e-18   2
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp...   182  1.8e-18   2

WARNING:  Descriptions of 669 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2139340 [details] [associations]
            symbol:RBP-DR1 "RNA-binding protein-defense related 1"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
            hypersensitive response" evidence=IMP] [GO:0080151 "positive
            regulation of salicylic acid mediated signaling pathway"
            evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
            KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
            EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
            UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
            PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
            KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
            PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
            Uniprot:Q8LFS6
        Length = 441

 Score = 1404 (499.3 bits), Expect = 1.2e-143, P = 1.2e-143
 Identities = 279/424 (65%), Positives = 324/424 (76%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             VKLFVGQ+PKHM+E+QLL +F+EFA+VDEVNIIKDK TRASR CCF++CPSR+EADK VN
Sbjct:    18 VKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVN 77

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             ACHNKKTLPGA+S LQVKYADGELERLEHKLF+GMLPKNVSEAEV +LFS YGTIKDLQI
Sbjct:    78 ACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQI 137

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 193
             LRG+QQTSKGCAFLKYETKEQA++A+E+INGKHKMEGS+VPLVVKWADTE+E        
Sbjct:   138 LRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERERHTRRLQK 197

Query:   194 XXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGY-QASGSYGLMQYRLPPMQNQPGFHG 252
                    L N D  +PSLFGALPMGY PPYNGYGY Q  G+YG   Y LPP+QNQ  F  
Sbjct:   198 AQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYGYHQPPGTYG---YMLPPIQNQAAFSN 254

Query:   253 IIPPVNQGN--AMRGASPD-LSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLG 309
             +I   NQGN  A++G SPD +   +  RN+ MPP  ++GSGYPA+ G  +P  YP G++ 
Sbjct:   255 MIAQPNQGNNNALQGTSPDSVPPRLARRNFPMPPGNYMGSGYPAMRGHPFPFAYPRGIVS 314

Query:   310 HRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAF 369
              RPL++SPGS+SP +  S P            Q EGP GANLFIY+IP+EFGDQEL  AF
Sbjct:   315 PRPLSSSPGSISPGM--STPLGIGLSSVV---QTEGPEGANLFIYNIPREFGDQELAAAF 369

Query:   370 QAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNK 429
             Q+FG VLSAKVFVDKATGVSKCFGFVSY+S A+AQNAI MMNG             RD+ 
Sbjct:   370 QSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLKRDSN 429

Query:   430 QNKP 433
               +P
Sbjct:   430 NGQP 433


>TAIR|locus:2825067 [details] [associations]
            symbol:BRN2 "Bruno-like 2" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA;ISS] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13207 IPI:IPI00516617 RefSeq:NP_973752.1
            UniGene:At.42544 ProteinModelPortal:F4I0X0 SMR:F4I0X0 PRIDE:F4I0X0
            EnsemblPlants:AT1G03457.2 GeneID:839497 KEGG:ath:AT1G03457
            OMA:MENEERV Uniprot:F4I0X0
        Length = 438

 Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
 Identities = 199/328 (60%), Positives = 239/328 (72%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAV 72
             RVKLFVGQVPKHMTE QLL +F+EF++V+EVNIIK+KTTRA R CCF+ CP+R++ADK +
Sbjct:    11 RVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI 70

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL---------EHKLFIGMLPKNVSEAEVSALFS 123
             N+ HNKKTLPGASSPLQVKYADGELERL         EHKLF+GMLPKNVSE EV +LFS
Sbjct:    71 NSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFS 130

Query:   124 IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 183
              YGTIKDLQILRGS QTSKGC FLKYE+KEQA+AA+EA+NG+H MEG++VPL+VKWADTE
Sbjct:   131 EYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTE 190

Query:   184 KEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPP 243
             KE             + L   D Q+PS+FGALPM Y PPYNGYGY   G+YG   Y LPP
Sbjct:   191 KERQARRLLKVQSHVSRL---DPQNPSMFGALPMSYVPPYNGYGYHVPGTYG---YMLPP 244

Query:   244 MQNQPGFHGIIPPVNQGN--AMRGASPDLSSNMGPRNYAMPPSGF-VGSGYPAVPGLQYP 300
             +Q Q  FH +I P NQGN  A++G +  L+ ++ PR    P   F    G     GLQYP
Sbjct:   245 IQTQHAFHNVISP-NQGNGRALQGTA--LTESVPPR--LAPRRNFPTALGNYGYHGLQYP 299

Query:   301 MPYPGGMLGHR-PLNNSPGSVSPAVANS 327
             M +P GM+  R PL     +VSP ++N+
Sbjct:   300 MAFPRGMIPPRLPLT----TVSPGISNN 323

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 119/238 (50%), Positives = 147/238 (61%)

Query:   199 NNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 258
             +++   D Q+PS+FGALPM Y PPYNGYGY   G+YG   Y LPP+Q Q  FH +I P N
Sbjct:   203 SHVSRLDPQNPSMFGALPMSYVPPYNGYGYHVPGTYG---YMLPPIQTQHAFHNVISP-N 258

Query:   259 QGN--AMRGASPDLSSNMGPRNYAMPPSGF-VGSGYPAVPGLQYPMPYPGGMLGHR-PLN 314
             QGN  A++G +  L+ ++ PR    P   F    G     GLQYPM +P GM+  R PL 
Sbjct:   259 QGNGRALQGTA--LTESVPPR--LAPRRNFPTALGNYGYHGLQYPMAFPRGMIPPRLPLT 314

Query:   315 NSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGR 374
                 +VSP ++N+              Q EGP GANLFIY+IP+EF DQEL   FQ FG+
Sbjct:   315 ----TVSPGISNNG------TSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGK 364

Query:   375 VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNK 432
             VLSAKVFVDKATG+SKCFGF+SY+S A+AQNAI  MNGC            RDN Q +
Sbjct:   365 VLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKRDNGQQQ 422


>FB|FBgn0262475 [details] [associations]
            symbol:bru-2 "bruno-2" species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0017148 "negative regulation of translation"
            evidence=ISA] [GO:0003723 "RNA binding" evidence=ISA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:AE014134 GO:GO:0017148 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00560000076837
            RefSeq:NP_001036356.1 UniGene:Dm.412 ProteinModelPortal:Q0E8R3
            SMR:Q0E8R3 PRIDE:Q0E8R3 EnsemblMetazoa:FBtr0304856
            EnsemblMetazoa:FBtr0332233 GeneID:250811 KEGG:dme:Dmel_CG43065
            UCSC:CG31761-RE CTD:250811 FlyBase:FBgn0262475 OMA:AHVANGN
            PhylomeDB:Q0E8R3 GenomeRNAi:250811 NextBio:843510 Bgee:Q0E8R3
            Uniprot:Q0E8R3
        Length = 893

 Score = 430 (156.4 bits), Expect = 4.0e-64, Sum P(2) = 4.0e-64
 Identities = 113/314 (35%), Positives = 167/314 (53%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +K+FVGQ+PK   E +L  MF++F  V  +N+++DK T  SR CCFV   +R+ A +A +
Sbjct:   295 IKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQD 354

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A HN KTL G   P+Q+K AD E  R E KLF+GML K  +EA+V  LF+ +GTI++  +
Sbjct:   355 ALHNIKTLDGMHHPIQMKPADSE-NRNERKLFVGMLNKKYTEADVRQLFTGHGTIEECTV 413

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 193
             LR     SKGCAF+ + TK+ A+ A++A++    MEG S PLVVK+ADT+KE        
Sbjct:   414 LRDQAGQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVVKFADTQKEKDQKKMQQ 473

Query:   194 XXXXXN-NLPN---ADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 249
                    N P+   A +  P++  A  +  APP  G   + + S       +P +Q Q G
Sbjct:   474 IHAFCGINTPSGATAGAATPTINAATALIAAPPSAG---RTNPSMAAALAAVPQVQ-QAG 529

Query:   250 FHGIIP----PVNQGNAMRGA-SPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYP 304
                  P    P+N   A+  + +P+L +       A   + ++G+   A   LQ      
Sbjct:   530 SAATAPTTLVPLNSTTALSASLTPNLLATNAAHQGAAAAAAYLGADPAAAAHLQLYQQLH 589

Query:   305 GGMLGHRPLNNSPG 318
             G   G  P +  PG
Sbjct:   590 G--YGLSPAHYLPG 601

 Score = 260 (96.6 bits), Expect = 4.0e-64, Sum P(2) = 4.0e-64
 Identities = 60/135 (44%), Positives = 71/135 (52%)

Query:   302 PYPGGMLGHRPLNNSP--GSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQE 359
             PY   + G   L N    G+ S  V  S              QIEGP G+NLFIYH+PQE
Sbjct:   764 PYSSSLSG---LTNGAAYGAASQPVTTS--ALQAAAAGVTGKQIEGPDGSNLFIYHLPQE 818

Query:   360 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXX 419
             F D +L + F  FG VLSAKVF+DK T +SKCFGFVSY++P SA  AI  M+G       
Sbjct:   819 FIDTDLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNPHSANAAIQAMHGFQIGSKR 878

Query:   420 XXXXXXRDNKQNKPY 434
                   R     KPY
Sbjct:   879 LKVQLKRSKDAAKPY 893

 Score = 45 (20.9 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
 Identities = 18/72 (25%), Positives = 27/72 (37%)

Query:   239 YRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQ 298
             Y L P    PG +   PP N  +  +  SP +    G    ++  +    +  P + G  
Sbjct:   591 YGLSPAHYLPGLNFHHPPENSAHHSQH-SPGIG---GASAASLSAAAATAASNP-LGGAP 645

Query:   299 YPMPYPGGMLGH 310
              P P P    GH
Sbjct:   646 PPTPTPTSSAGH 657


>ZFIN|ZDB-GENE-000501-1 [details] [associations]
            symbol:celf1 "cugbp, Elav-like family member 1"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
            GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
            IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
        Length = 535

 Score = 394 (143.8 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
 Identities = 101/313 (32%), Positives = 161/313 (51%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQ+P+  +E QL  +F+ +  V E+N+++D++    ++  CCFV   +R+ A +A
Sbjct:    54 IKMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEA 113

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN K LPG   P+Q+K AD E      + KLF+GM+ K  +E ++  +FS YG I+
Sbjct:   114 QNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFVGMISKKCNENDIRLMFSPYGQIE 173

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXX 189
             + +ILRG    S+GCAF+ +  ++ A +A+++++    MEG S P+VVK+ADT+K+    
Sbjct:   174 ECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCSSPIVVKFADTQKDKEQK 233

Query:   190 XXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 249
                          NA S   +L G   +G  P Y     Q S S G     L PM     
Sbjct:   234 RIAQQLQQQMQQLNAASMWGNLTGLNSLG--PQYLAL-LQQSASSGNALNNLHPMSGLNA 290

Query:   250 FHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLG 309
                +       +A + A+P  SS +     + P S    SG P+  G      +     G
Sbjct:   291 MQNLAALAAAASATQ-ATPTGSSAL--TTSSSPLSVLTSSGTPS--GQPAQSAWDAYKAG 345

Query:   310 HRPLNNSPGSVSP 322
               P +++  SV+P
Sbjct:   346 SSPTSSTSSSVNP 358

 Score = 275 (101.9 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
 Identities = 53/93 (56%), Positives = 62/93 (66%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP GANLFIYH+PQEFGDQ+L   F  FG V+SAKVF+DK T +SKCFGFVSY++P 
Sbjct:   443 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 502

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             S+Q AI  MNG             R    +KPY
Sbjct:   503 SSQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 535


>DICTYBASE|DDB_G0291486 [details] [associations]
            symbol:DDB_G0291486 "putative splicing regulator"
            species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
            RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
            EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
            InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
        Length = 489

 Score = 430 (156.4 bits), Expect = 9.9e-64, Sum P(2) = 9.9e-64
 Identities = 82/171 (47%), Positives = 117/171 (68%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNA 74
             KLFVGQ+PK   E ++  +F   A ++ V++IK+KTT   + C FV  PSR+EAD+A+  
Sbjct:     4 KLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQ 63

Query:    75 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
              HN K   G  + LQVKYAD E E+L  KLF+GMLP++  E ++  LF  +G ++D+ IL
Sbjct:    64 LHNSKKFQGVLNNLQVKYADSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGVVEDICIL 123

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             RG    SKGC F+K++ +E AL+A+  +NG  K++GS  PLVVK+ADTEK+
Sbjct:   124 RGPNSESKGCGFIKFDNRESALSAIATLNGM-KLDGSPNPLVVKFADTEKD 173

 Score = 238 (88.8 bits), Expect = 9.9e-64, Sum P(2) = 9.9e-64
 Identities = 78/223 (34%), Positives = 103/223 (46%)

Query:   199 NNLPNADSQHPSLFGALPMGYAPPYNGYGY-QASGSYGLMQYRLPPMQNQPGFHGIIPPV 257
             N +P+ DS  PSL G  P+     Y+ Y   Q    Y           N    +G     
Sbjct:   247 NFIPSIDSS-PSLLGTPPIIGDGIYDIYSNSQFDNKYNNNGGMGGNGGNNGNMYG--RNF 303

Query:   258 NQGN--AMRGASPDLSSNMGPRNYAMPPSGFVGSGY----PAVPGLQYPMPYPGGMLGHR 311
             N GN   M G + +  +N GP    M   G +G+G     P   G+    P   GM G+ 
Sbjct:   304 NNGNNGPMGGMNGNGMNNGGPMGNGMNNGGPMGNGMNNGGPMGNGMNNGGPMGNGMNGNG 363

Query:   312 PLNNSPGSVSPAVANSNPXXXXXXX--XXXXXQIEGPPGANLFIYHIPQEFGDQELGNAF 369
                N  G       N+                Q  GP G+NLF+Y+IP  F D +L   F
Sbjct:   364 MNGNGMGGPMGNGMNNGMGGMNQGGPMGNKKNQSVGPQGSNLFVYNIPNYFSDNDLLGLF 423

Query:   370 QAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             Q +G V+SAKV+VDK TGVSK FGFVSY++PASA  AI+ ++G
Sbjct:   424 QQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAISNLHG 466

 Score = 125 (49.1 bits), Expect = 9.6e-27, Sum P(2) = 9.6e-27
 Identities = 26/84 (30%), Positives = 49/84 (58%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG +P+   E Q+  +F+   +V+++ I++   + +  C F+   +R+ A  A+   
Sbjct:    92 KLFVGMLPRSYEEEQIRELFEPHGVVEDICILRGPNSESKGCGFIKFDNRESALSAIATL 151

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             +  K L G+ +PL VK+AD E ++
Sbjct:   152 NGMK-LDGSPNPLVVKFADTEKDK 174

 Score = 74 (31.1 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
 Identities = 19/76 (25%), Positives = 38/76 (50%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQI-LRGSQQTSKGCAFLKYETKEQALAALEAI 162
             LF+  +P   S+ ++  LF  YG +   ++ +  +   SKG  F+ Y+    A  A+  +
Sbjct:   405 LFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAISNL 464

Query:   163 NGKHKMEGSSVPLVVK 178
             +G+  M G  + + +K
Sbjct:   465 HGQ-MMAGKKLKVSLK 479


>ZFIN|ZDB-GENE-000501-2 [details] [associations]
            symbol:celf3a "cugbp, Elav-like family member 3a"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
            eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
            EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
            RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
            SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
            CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
            Bgee:Q9IBD1 Uniprot:Q9IBD1
        Length = 452

 Score = 400 (145.9 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
 Identities = 79/172 (45%), Positives = 119/172 (69%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLF+GQ+P+++ E  L  +F++F  + E+ +IKDK T   + C F+   +R+ A KA N
Sbjct:     7 IKLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQN 66

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H +KTLPG + P+QVK AD E  R + KLF+GML K +S+A+V  +F  +G+I++  +
Sbjct:    67 ALHEQKTLPGMNRPIQVKPADSE-GRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTV 125

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             LRG    SKGCAF+KY++  +A AA+ A++G   + G+S  LVVK+ADTEKE
Sbjct:   126 LRGPDGASKGCAFVKYQSNAEAQAAISALHGSRTLPGASSSLVVKFADTEKE 177

 Score = 265 (98.3 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
 Identities = 75/184 (40%), Positives = 93/184 (50%)

Query:   255 PPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQ-YPMPYPG--GMLGH 310
             PPV      + AS  L +N G   Y A  P+  +     A  G+Q Y   YP   G++G 
Sbjct:   283 PPVPAAPNGQSASEALYTN-GVHPYQAQSPA--LDPLQQAYTGMQHYTATYPAAYGLVG- 338

Query:   311 RPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQ 370
             +P  + P  V  A     P            Q EGP G N+FIYH+PQEF D E+   F 
Sbjct:   339 QPFPHQPTLV--AQQPQQPQQLQ--------QREGPEGCNIFIYHLPQEFTDSEMLQMFL 388

Query:   371 AFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQ 430
              FG V+SAKVFVD+AT  SKCFGFVS+++PASAQ AI  MNG             R    
Sbjct:   389 PFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 448

Query:   431 NKPY 434
             N+PY
Sbjct:   449 NRPY 452

 Score = 173 (66.0 bits), Expect = 7.2e-36, Sum P(2) = 7.2e-36
 Identities = 35/84 (41%), Positives = 51/84 (60%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K +++A +  MF+ F  ++E  +++     +  C FV   S  EA  A++A 
Sbjct:    95 KLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPDGASKGCAFVKYQSNAEAQAAISAL 154

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             H  +TLPGASS L VK+AD E ER
Sbjct:   155 HGSRTLPGASSSLVVKFADTEKER 178

 Score = 76 (31.8 bits), Expect = 7.0e-14, Sum P(2) = 7.0e-14
 Identities = 18/63 (28%), Positives = 36/63 (57%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 161
             +FI  LP+  +++E+  +F  +G +   ++   R + Q SK   F+ ++    A AA++A
Sbjct:   369 IFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 427

Query:   162 ING 164
             +NG
Sbjct:   428 MNG 430


>UNIPROTKB|F1ND14 [details] [associations]
            symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0040018 "positive regulation of multicellular organism growth"
            evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
            "regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
            evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
            [GO:0031369 "translation initiation factor binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
            GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
            EMBL:AADN02033464 Ensembl:ENSGALT00000013143
            Ensembl:ENSGALT00000038511 Uniprot:F1ND14
        Length = 485

 Score = 363 (132.8 bits), Expect = 2.1e-63, Sum P(3) = 2.1e-63
 Identities = 72/176 (40%), Positives = 114/176 (64%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQVP+   E  L  +F+++  V E+N+++D++    ++  CCFV   +R+ A +A
Sbjct:    16 IKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN K LPG   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I+
Sbjct:    76 QNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIE 135

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +ILRG    S+GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:   136 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKD 191

 Score = 277 (102.6 bits), Expect = 2.1e-63, Sum P(3) = 2.1e-63
 Identities = 54/93 (58%), Positives = 62/93 (66%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP GANLFIYH+PQEFGDQ+L   F  FG V+SAKVF+DK T +SKCFGFVSY++P 
Sbjct:   393 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 452

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    +KPY
Sbjct:   453 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 485

 Score = 165 (63.1 bits), Expect = 2.9e-38, Sum P(3) = 2.9e-38
 Identities = 45/155 (29%), Positives = 74/155 (47%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G + K   E  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:   109 KLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 168

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR 135
             H  +T+ G SSP+ VK+AD + ++ E K     L + + +  +SA  S++G +  L  L 
Sbjct:   169 HQAQTMEGCSSPIVVKFADTQKDK-EQKRIAQQLQQQMQQ--ISAA-SVWGNLAGLNTL- 223

Query:   136 GSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 170
             G Q  +     L  +T   +   L  ++  H M G
Sbjct:   224 GPQYLA-----LLQQTAAASSGNLNTLSSLHPMGG 253

 Score = 37 (18.1 bits), Expect = 2.1e-63, Sum P(3) = 2.1e-63
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query:   289 SGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 322
             SG  A+     P+       G  P ++S  SV+P
Sbjct:   277 SGTAALTSSSSPLSVLTSSAGSSPSSSSSSSVNP 310


>UNIPROTKB|Q08E07 [details] [associations]
            symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
            "Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
            "spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
            GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
            GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
            GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
            RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
            SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
            KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
            NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
        Length = 461

 Score = 389 (142.0 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
 Identities = 77/172 (44%), Positives = 113/172 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLFVGQ+P+H+ E  L  +F++F  + E+ +IKDK T   + C F+   +R  A KA +
Sbjct:     7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H +KTLPG + P+QVK AD E    + KLF+GML K  ++ +V  +F  +GTI +  +
Sbjct:    67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             LRG   TSKGCAF+K++T  +A AA+  ++    + G+S  LVVK+ADTEKE
Sbjct:   127 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178

 Score = 270 (100.1 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
 Identities = 71/187 (37%), Positives = 87/187 (46%)

Query:   249 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQYPMPYPGGM 307
             G +G  P   Q       +PD     G   Y A  P+  V     A  G+Q+   YP   
Sbjct:   278 GVNGYSPVPTQPTGQ--PAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAYPAAY 335

Query:   308 LGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGN 367
                 P    P ++  A     P            Q EGP G N+FIYH+PQEF D E+  
Sbjct:   336 SLVAPAFPQPPALV-AQQPPPPPQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQ 394

Query:   368 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRD 427
              F  FG V+SAKVFVD+AT  SKCFGFVS+++PASAQ AI  MNG             R 
Sbjct:   395 MFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 454

Query:   428 NKQNKPY 434
                N+PY
Sbjct:   455 KDANRPY 461

 Score = 174 (66.3 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
 Identities = 35/84 (41%), Positives = 49/84 (58%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  T+  +  MF+ F  +DE  +++     +  C FV   +  EA  A+N  
Sbjct:    96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTL 155

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             H+ +TLPGASS L VK+AD E ER
Sbjct:   156 HSSRTLPGASSSLVVKFADTEKER 179

 Score = 76 (31.8 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
 Identities = 18/63 (28%), Positives = 36/63 (57%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 161
             +FI  LP+  +++E+  +F  +G +   ++   R + Q SK   F+ ++    A AA++A
Sbjct:   378 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 436

Query:   162 ING 164
             +NG
Sbjct:   437 MNG 439


>MGI|MGI:1926034 [details] [associations]
            symbol:Celf3 "CUGBP, Elav-like family member 3"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
            evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
            splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
            HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
            eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
            CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
            EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
            UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
            PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
            Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
            UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
            Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
        Length = 465

 Score = 388 (141.6 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
 Identities = 78/172 (45%), Positives = 114/172 (66%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLFVGQ+P+H+ E  L  +F++F  + E+ +IKDK T   + C F+   +R  A KA +
Sbjct:     7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H +KTLPG + P+QVK AD E  R + KLF+GML K  ++ +V  +F  +GTI +  +
Sbjct:    67 ALHEQKTLPGMNRPIQVKPADSE-SRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 125

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             LRG   TSKGCAF+K++T  +A AA+  ++    + G+S  LVVK+ADTEKE
Sbjct:   126 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 177

 Score = 264 (98.0 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
 Identities = 71/191 (37%), Positives = 86/191 (45%)

Query:   249 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQ-YPMPYPGG 306
             G +G  P   Q       +PD     G   Y A  P+  V     A  G+Q Y   YP  
Sbjct:   277 GVNGYSPVPTQPTGQ--PAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAA 334

Query:   307 MLGHRPLNNSPGSV---SPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQ 363
                  P    P ++    P                   Q EGP G N+FIYH+PQEF D 
Sbjct:   335 YSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDS 394

Query:   364 ELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXX 423
             E+   F  FG V+SAKVFVD+AT  SKCFGFVS+++PASAQ AI  MNG           
Sbjct:   395 EILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 454

Query:   424 XXRDNKQNKPY 434
               R    N+PY
Sbjct:   455 LKRPKDANRPY 465

 Score = 174 (66.3 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
 Identities = 35/84 (41%), Positives = 49/84 (58%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  T+  +  MF+ F  +DE  +++     +  C FV   +  EA  A+N  
Sbjct:    95 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTL 154

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             H+ +TLPGASS L VK+AD E ER
Sbjct:   155 HSSRTLPGASSSLVVKFADTEKER 178

 Score = 76 (31.8 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
 Identities = 18/63 (28%), Positives = 36/63 (57%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 161
             +FI  LP+  +++E+  +F  +G +   ++   R + Q SK   F+ ++    A AA++A
Sbjct:   382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 440

Query:   162 ING 164
             +NG
Sbjct:   441 MNG 443


>ZFIN|ZDB-GENE-040718-300 [details] [associations]
            symbol:celf4 "CUGBP, Elav-like family member 4"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
            HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
            HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
            IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
            ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
            CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
            Bgee:Q6DGV1 Uniprot:Q6DGV1
        Length = 520

 Score = 390 (142.3 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
 Identities = 78/172 (45%), Positives = 113/172 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLF+GQ+P+++ E  L  +F+EF  + E+ ++KD+ T   + C F+   +R+ A KA  
Sbjct:    47 IKLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQT 106

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H +KTLPG + P+QVK AD E    + KLF+GML K   E +V  LF  +G+I++  I
Sbjct:   107 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQCEDDVRRLFESFGSIEECTI 166

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             LRG    SKGCAF+KY T  +A AA+ A++G   M G+S  LVVK+ADT+KE
Sbjct:   167 LRGPDGNSKGCAFVKYSTHAEAQAAISALHGSQTMPGASSSLVVKFADTDKE 218

 Score = 261 (96.9 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
 Identities = 52/93 (55%), Positives = 60/93 (64%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP G NLFIYH+PQEFGD EL   F  FG V+S+KVFVD+AT  SKCFGFVS+++P 
Sbjct:   428 QREGPEGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPG 487

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    N+PY
Sbjct:   488 SAQAAIQSMNGFQIGMKRLKVQLKRPKDANRPY 520

 Score = 157 (60.3 bits), Expect = 4.4e-33, Sum P(2) = 4.4e-33
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K   E  +  +F+ F  ++E  I++     +  C FV   +  EA  A++A 
Sbjct:   136 KLFVGMLNKQQCEDDVRRLFESFGSIEECTILRGPDGNSKGCAFVKYSTHAEAQAAISAL 195

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             H  +T+PGASS L VK+AD + ER
Sbjct:   196 HGSQTMPGASSSLVVKFADTDKER 219

 Score = 72 (30.4 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 161
             LFI  LP+   + E+  +F  +G +   ++   R + Q SK   F+ ++    A AA+++
Sbjct:   437 LFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQ-SKCFGFVSFDNPGSAQAAIQS 495

Query:   162 ING 164
             +NG
Sbjct:   496 MNG 498


>UNIPROTKB|Q7ZWM3 [details] [associations]
            symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
            species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
            KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
            UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
            KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
        Length = 462

 Score = 390 (142.3 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
 Identities = 76/172 (44%), Positives = 115/172 (66%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLF+GQ+P+++ E  L  +F++F  + E+ +IKDK T   + C F+   +R+ A KA +
Sbjct:     7 IKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQS 66

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H +KTLPG + P+QVK AD E    + KLF+GML K  ++ +V  +F  +G I +  +
Sbjct:    67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFETFGNIDECTV 126

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             LRG   TSKGCAF+K++T  +A AA+ A++G   + G+S  LVVK+ADTEKE
Sbjct:   127 LRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKE 178

 Score = 260 (96.6 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
 Identities = 56/117 (47%), Positives = 65/117 (55%)

Query:   318 GSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS 377
             G VSPA     P            Q EGP G N+FIYH+PQEF D E+   F  FG V+S
Sbjct:   347 GLVSPAFTQP-PAILTQQPPQQQQQREGPEGCNIFIYHLPQEFTDSEILQMFLPFGNVIS 405

Query:   378 AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             AKVFVD+AT  SKCFGFVS+++P SAQ AI  MNG             R    N+PY
Sbjct:   406 AKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSMNGFQIGMKRLKVQLKRPKDANRPY 462

 Score = 175 (66.7 bits), Expect = 3.4e-35, Sum P(2) = 3.4e-35
 Identities = 36/84 (42%), Positives = 49/84 (58%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  T+  +  MF+ F  +DE  +++     +  C FV   +  EA  A+NA 
Sbjct:    96 KLFVGMLGKQQTDEDVRRMFETFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINAL 155

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             H  +TLPGASS L VK+AD E ER
Sbjct:   156 HGSRTLPGASSSLVVKFADTEKER 179

 Score = 74 (31.1 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
 Identities = 17/63 (26%), Positives = 36/63 (57%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 161
             +FI  LP+  +++E+  +F  +G +   ++   R + Q SK   F+ ++    A AA+++
Sbjct:   379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQ-SKCFGFVSFDNPGSAQAAIQS 437

Query:   162 ING 164
             +NG
Sbjct:   438 MNG 440


>UNIPROTKB|Q5SZQ8 [details] [associations]
            symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
            motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
            [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
            evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
            "positive regulation of mRNA splicing, via spliceosome"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
            GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
            GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
            OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
            EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
            EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
            RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
            ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
            MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
            PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
            UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
            GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
            neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
            EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
            ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
            Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
        Length = 465

 Score = 389 (142.0 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
 Identities = 77/172 (44%), Positives = 113/172 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLFVGQ+P+H+ E  L  +F++F  + E+ +IKDK T   + C F+   +R  A KA +
Sbjct:     7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H +KTLPG + P+QVK AD E    + KLF+GML K  ++ +V  +F  +GTI +  +
Sbjct:    67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             LRG   TSKGCAF+K++T  +A AA+  ++    + G+S  LVVK+ADTEKE
Sbjct:   127 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178

 Score = 261 (96.9 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
 Identities = 71/190 (37%), Positives = 86/190 (45%)

Query:   249 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQ-YPMPYPGG 306
             G +G  P   Q       +PD     G   Y A  P+  V     A  G+Q Y   YP  
Sbjct:   278 GVNGYSPVPTQPTGQ--PAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAA 335

Query:   307 MLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQI--EGPPGANLFIYHIPQEFGDQE 364
                  P    P ++        P            Q   EGP G N+FIYH+PQEF D E
Sbjct:   336 YSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSE 395

Query:   365 LGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXX 424
             +   F  FG V+SAKVFVD+AT  SKCFGFVS+++PASAQ AI  MNG            
Sbjct:   396 ILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 455

Query:   425 XRDNKQNKPY 434
              R    N+PY
Sbjct:   456 KRPKDANRPY 465

 Score = 174 (66.3 bits), Expect = 3.3e-35, Sum P(2) = 3.3e-35
 Identities = 35/84 (41%), Positives = 49/84 (58%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  T+  +  MF+ F  +DE  +++     +  C FV   +  EA  A+N  
Sbjct:    96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTL 155

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             H+ +TLPGASS L VK+AD E ER
Sbjct:   156 HSSRTLPGASSSLVVKFADTEKER 179

 Score = 76 (31.8 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
 Identities = 18/63 (28%), Positives = 36/63 (57%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 161
             +FI  LP+  +++E+  +F  +G +   ++   R + Q SK   F+ ++    A AA++A
Sbjct:   382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 440

Query:   162 ING 164
             +NG
Sbjct:   441 MNG 443


>UNIPROTKB|Q91579 [details] [associations]
            symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
            species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
            RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
            ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
            CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
            GO:GO:0048026 Uniprot:Q91579
        Length = 462

 Score = 388 (141.6 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
 Identities = 76/172 (44%), Positives = 115/172 (66%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLF+GQ+P+++ E  L  +F++F  + E+ +IKDK T   + C F+   +R+ A KA +
Sbjct:     7 IKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQS 66

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H +KTLPG + P+QVK AD E    + KLF+GML K  ++ +V  +F  +G I +  +
Sbjct:    67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFEPFGNIDECTV 126

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             LRG   TSKGCAF+K++T  +A AA+ A++G   + G+S  LVVK+ADTEKE
Sbjct:   127 LRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKE 178

 Score = 259 (96.2 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
 Identities = 56/117 (47%), Positives = 65/117 (55%)

Query:   318 GSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS 377
             G VSPA     P            Q EGP G N+FIYH+PQEF D E+   F  FG V+S
Sbjct:   347 GLVSPAFTQP-PAILQQQPPQQQQQREGPEGCNIFIYHLPQEFTDSEILQMFLPFGNVIS 405

Query:   378 AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             AKVFVD+AT  SKCFGFVS+++P SAQ AI  MNG             R    N+PY
Sbjct:   406 AKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 462

 Score = 175 (66.7 bits), Expect = 4.6e-35, Sum P(2) = 4.6e-35
 Identities = 36/84 (42%), Positives = 49/84 (58%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  T+  +  MF+ F  +DE  +++     +  C FV   +  EA  A+NA 
Sbjct:    96 KLFVGMLGKQQTDEDVRRMFEPFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINAL 155

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             H  +TLPGASS L VK+AD E ER
Sbjct:   156 HGSRTLPGASSSLVVKFADTEKER 179

 Score = 77 (32.2 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
 Identities = 18/63 (28%), Positives = 36/63 (57%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 161
             +FI  LP+  +++E+  +F  +G +   ++   R + Q SK   F+ ++    A AA++A
Sbjct:   379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQ-SKCFGFVSFDNPGSAQAAIQA 437

Query:   162 ING 164
             +NG
Sbjct:   438 MNG 440


>UNIPROTKB|Q5SZQ7 [details] [associations]
            symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
            HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
            EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
            KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
            NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
            STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
            EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
        Length = 415

 Score = 389 (142.0 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 77/172 (44%), Positives = 113/172 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLFVGQ+P+H+ E  L  +F++F  + E+ +IKDK T   + C F+   +R  A KA +
Sbjct:     7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H +KTLPG + P+QVK AD E    + KLF+GML K  ++ +V  +F  +GTI +  +
Sbjct:    67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             LRG   TSKGCAF+K++T  +A AA+  ++    + G+S  LVVK+ADTEKE
Sbjct:   127 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178

 Score = 257 (95.5 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 51/93 (54%), Positives = 60/93 (64%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP G N+FIYH+PQEF D E+   F  FG V+SAKVFVD+AT  SKCFGFVS+++PA
Sbjct:   323 QREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPA 382

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    N+PY
Sbjct:   383 SAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 415

 Score = 174 (66.3 bits), Expect = 4.1e-35, Sum P(2) = 4.1e-35
 Identities = 35/84 (41%), Positives = 49/84 (58%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  T+  +  MF+ F  +DE  +++     +  C FV   +  EA  A+N  
Sbjct:    96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTL 155

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             H+ +TLPGASS L VK+AD E ER
Sbjct:   156 HSSRTLPGASSSLVVKFADTEKER 179

 Score = 76 (31.8 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
 Identities = 18/63 (28%), Positives = 36/63 (57%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 161
             +FI  LP+  +++E+  +F  +G +   ++   R + Q SK   F+ ++    A AA++A
Sbjct:   332 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 390

Query:   162 ING 164
             +NG
Sbjct:   391 MNG 393


>MGI|MGI:1342295 [details] [associations]
            symbol:Celf1 "CUGBP, Elav-like family member 1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0003729 "mRNA binding"
            evidence=ISO] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005737
            "cytoplasm" evidence=IDA;TAS] [GO:0006376 "mRNA splice site
            selection" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0031369 "translation
            initiation factor binding" evidence=IDA] [GO:0040018 "positive
            regulation of multicellular organism growth" evidence=IMP]
            [GO:0042835 "BRE binding" evidence=ISO] [GO:0043484 "regulation of
            RNA splicing" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1342295
            GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
            EMBL:AL672241 HOVERGEN:HBG107646 KO:K13207 CTD:10658
            eggNOG:NOG251494 ChiTaRS:CELF1 GO:GO:0042835 GO:GO:0006376
            EMBL:AJ007987 EMBL:AF267535 EMBL:AK135030 EMBL:AK143698
            EMBL:AK014492 EMBL:AK156725 EMBL:BC021393 EMBL:AF314172
            EMBL:AB050499 EMBL:X61451 IPI:IPI00123205 IPI:IPI00229237
            IPI:IPI00229238 IPI:IPI00395213 PIR:S16865 RefSeq:NP_001231820.1
            RefSeq:NP_001231832.1 RefSeq:NP_059064.2 RefSeq:NP_941955.1
            UniGene:Mm.29495 UniGene:Mm.490161 ProteinModelPortal:P28659
            SMR:P28659 STRING:P28659 PhosphoSite:P28659 PaxDb:P28659
            PRIDE:P28659 Ensembl:ENSMUST00000005643 Ensembl:ENSMUST00000068726
            Ensembl:ENSMUST00000068747 Ensembl:ENSMUST00000111448
            Ensembl:ENSMUST00000111449 Ensembl:ENSMUST00000111451
            Ensembl:ENSMUST00000111452 Ensembl:ENSMUST00000111455
            Ensembl:ENSMUST00000177642 GeneID:13046 KEGG:mmu:13046
            UCSC:uc008ktx.1 GeneTree:ENSGT00560000076837 InParanoid:P28659
            OMA:PTLYNQS NextBio:282946 Bgee:P28659 CleanEx:MM_CUGBP1
            Genevestigator:P28659 GermOnline:ENSMUSG00000005506 GO:GO:0031369
            Uniprot:P28659
        Length = 486

 Score = 367 (134.2 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 73/176 (41%), Positives = 115/176 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQVP+  +E  L  +F+++  V E+NI++D++    ++  CCFV   +R+ A +A
Sbjct:    16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN K LPG   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I+
Sbjct:    76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +ILRG    S+GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:   136 ECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191

 Score = 279 (103.3 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 57/113 (50%), Positives = 66/113 (58%)

Query:   322 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 381
             P + N N             Q EGP GANLFIYH+PQEFGDQ+L   F  FG V+SAKVF
Sbjct:   375 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 433

Query:   382 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             +DK T +SKCFGFVSY++P SAQ AI  MNG             R    +KPY
Sbjct:   434 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 486

 Score = 171 (65.3 bits), Expect = 4.0e-38, Sum P(2) = 4.0e-38
 Identities = 45/155 (29%), Positives = 76/155 (49%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G + K  TE  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:   109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAM 168

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR 135
             H  +T+ G SSP+ VK+AD + ++ E K     L + + +  +SA  S++G +  L  L 
Sbjct:   169 HQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL- 223

Query:   136 GSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 170
             G Q  +    +L+   +  +   L  ++  H M G
Sbjct:   224 GPQYLA---LYLQLLQQTASSGNLNTLSSLHPMGG 255


>RGD|1307721 [details] [associations]
            symbol:Celf1 "CUGBP, Elav-like family member 1" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
            evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006376 "mRNA splice
            site selection" evidence=IEA;ISO] [GO:0007286 "spermatid
            development" evidence=IEA;ISO] [GO:0031369 "translation initiation
            factor binding" evidence=IEA;ISO] [GO:0040018 "positive regulation
            of multicellular organism growth" evidence=IEA;ISO] [GO:0042835
            "BRE binding" evidence=IEA;ISO] [GO:0043484 "regulation of RNA
            splicing" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307721
            GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723
            GO:GO:0043484 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658
            eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
            GO:GO:0042835 GO:GO:0006376 EMBL:BC098012 IPI:IPI00373642
            RefSeq:NP_001020592.1 UniGene:Rn.22432 ProteinModelPortal:Q4QQT3
            SMR:Q4QQT3 STRING:Q4QQT3 PhosphoSite:Q4QQT3 PRIDE:Q4QQT3
            GeneID:362160 KEGG:rno:362160 UCSC:RGD:1307721 InParanoid:Q4QQT3
            NextBio:678844 Genevestigator:Q4QQT3 Uniprot:Q4QQT3
        Length = 487

 Score = 367 (134.2 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 73/176 (41%), Positives = 115/176 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQVP+  +E  L  +F+++  V E+NI++D++    ++  CCFV   +R+ A +A
Sbjct:    16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN K LPG   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I+
Sbjct:    76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +ILRG    S+GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:   136 ECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191

 Score = 279 (103.3 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 57/113 (50%), Positives = 66/113 (58%)

Query:   322 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 381
             P + N N             Q EGP GANLFIYH+PQEFGDQ+L   F  FG V+SAKVF
Sbjct:   376 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 434

Query:   382 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             +DK T +SKCFGFVSY++P SAQ AI  MNG             R    +KPY
Sbjct:   435 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 487

 Score = 169 (64.5 bits), Expect = 6.6e-38, Sum P(2) = 6.6e-38
 Identities = 45/157 (28%), Positives = 76/157 (48%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G + K  TE  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:   109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAM 168

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR 135
             H  +T+ G SSP+ VK+AD + ++ E K     L + + +  +SA  S++G +  L  L 
Sbjct:   169 HQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL- 223

Query:   136 GSQQTSKGCAFLKYETKE---QALAALEAINGKHKME 169
             G Q  +     L+          L++L  + G + M+
Sbjct:   224 GPQYLALYLQLLQQTANSGNLNTLSSLHPMGGLNAMQ 260


>UNIPROTKB|Q4QQT3 [details] [associations]
            symbol:Celf1 "CUGBP Elav-like family member 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1307721 GO:GO:0005634
            GO:GO:0005737 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 GO:GO:0043484
            HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 eggNOG:NOG251494
            HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
            EMBL:BC098012 IPI:IPI00373642 RefSeq:NP_001020592.1
            UniGene:Rn.22432 ProteinModelPortal:Q4QQT3 SMR:Q4QQT3 STRING:Q4QQT3
            PhosphoSite:Q4QQT3 PRIDE:Q4QQT3 GeneID:362160 KEGG:rno:362160
            UCSC:RGD:1307721 InParanoid:Q4QQT3 NextBio:678844
            Genevestigator:Q4QQT3 Uniprot:Q4QQT3
        Length = 487

 Score = 367 (134.2 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 73/176 (41%), Positives = 115/176 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQVP+  +E  L  +F+++  V E+NI++D++    ++  CCFV   +R+ A +A
Sbjct:    16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN K LPG   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I+
Sbjct:    76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +ILRG    S+GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:   136 ECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191

 Score = 279 (103.3 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 57/113 (50%), Positives = 66/113 (58%)

Query:   322 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 381
             P + N N             Q EGP GANLFIYH+PQEFGDQ+L   F  FG V+SAKVF
Sbjct:   376 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 434

Query:   382 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             +DK T +SKCFGFVSY++P SAQ AI  MNG             R    +KPY
Sbjct:   435 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 487

 Score = 169 (64.5 bits), Expect = 6.6e-38, Sum P(2) = 6.6e-38
 Identities = 45/157 (28%), Positives = 76/157 (48%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G + K  TE  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:   109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAM 168

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR 135
             H  +T+ G SSP+ VK+AD + ++ E K     L + + +  +SA  S++G +  L  L 
Sbjct:   169 HQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL- 223

Query:   136 GSQQTSKGCAFLKYETKE---QALAALEAINGKHKME 169
             G Q  +     L+          L++L  + G + M+
Sbjct:   224 GPQYLALYLQLLQQTANSGNLNTLSSLHPMGGLNAMQ 260


>UNIPROTKB|A7MB95 [details] [associations]
            symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
            [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
            regulation of multicellular organism growth" evidence=IEA]
            [GO:0031369 "translation initiation factor binding" evidence=IEA]
            [GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
            splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
            KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
            OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
            GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
            EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
            RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
            Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
            InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
        Length = 486

 Score = 366 (133.9 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
 Identities = 72/176 (40%), Positives = 115/176 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQVP+  +E  L  +F+++  V E+N+++D++    ++  CCFV   +R+ A +A
Sbjct:    16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN K LPG   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I+
Sbjct:    76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +ILRG    S+GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:   136 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191

 Score = 279 (103.3 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
 Identities = 57/113 (50%), Positives = 66/113 (58%)

Query:   322 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 381
             P + N N             Q EGP GANLFIYH+PQEFGDQ+L   F  FG V+SAKVF
Sbjct:   375 PTLYNQN-LLAQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 433

Query:   382 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             +DK T +SKCFGFVSY++P SAQ AI  MNG             R    +KPY
Sbjct:   434 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 486

 Score = 171 (65.3 bits), Expect = 4.0e-38, Sum P(2) = 4.0e-38
 Identities = 45/155 (29%), Positives = 76/155 (49%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G + K  TE  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:   109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 168

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR 135
             H  +T+ G SSP+ VK+AD + ++ E K     L + + +  +SA  S++G +  L  L 
Sbjct:   169 HQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL- 223

Query:   136 GSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 170
             G Q  +    +L+   +  +   L  ++  H M G
Sbjct:   224 GPQYLA---LYLQLLQQTASSGNLNTLSSLHPMGG 255


>UNIPROTKB|E2R8F6 [details] [associations]
            symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
            "positive regulation of multicellular organism growth"
            evidence=IEA] [GO:0031369 "translation initiation factor binding"
            evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
            [GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
            "mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
            GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
            OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
            Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
        Length = 513

 Score = 366 (133.9 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
 Identities = 72/176 (40%), Positives = 115/176 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQVP+  +E  L  +F+++  V E+N+++D++    ++  CCFV   +R+ A +A
Sbjct:    43 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN K LPG   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I+
Sbjct:   103 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 162

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +ILRG    S+GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:   163 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 218

 Score = 279 (103.3 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
 Identities = 57/113 (50%), Positives = 66/113 (58%)

Query:   322 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 381
             P + N N             Q EGP GANLFIYH+PQEFGDQ+L   F  FG V+SAKVF
Sbjct:   402 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 460

Query:   382 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             +DK T +SKCFGFVSY++P SAQ AI  MNG             R    +KPY
Sbjct:   461 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 513

 Score = 171 (65.3 bits), Expect = 6.3e-38, Sum P(2) = 6.3e-38
 Identities = 45/155 (29%), Positives = 76/155 (49%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G + K  TE  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:   136 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 195

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR 135
             H  +T+ G SSP+ VK+AD + ++ E K     L + + +  +SA  S++G +  L  L 
Sbjct:   196 HQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL- 250

Query:   136 GSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 170
             G Q  +    +L+   +  +   L  ++  H M G
Sbjct:   251 GPQYLA---LYLQLLQQTASSGNLNTLSSLHPMGG 282


>UNIPROTKB|G5EA30 [details] [associations]
            symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
            isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
            HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
            SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
            Bgee:G5EA30 Uniprot:G5EA30
        Length = 514

 Score = 366 (133.9 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
 Identities = 72/176 (40%), Positives = 115/176 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQVP+  +E  L  +F+++  V E+N+++D++    ++  CCFV   +R+ A +A
Sbjct:    43 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN K LPG   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I+
Sbjct:   103 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 162

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +ILRG    S+GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:   163 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 218

 Score = 279 (103.3 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
 Identities = 57/113 (50%), Positives = 66/113 (58%)

Query:   322 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 381
             P + N N             Q EGP GANLFIYH+PQEFGDQ+L   F  FG V+SAKVF
Sbjct:   403 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 461

Query:   382 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             +DK T +SKCFGFVSY++P SAQ AI  MNG             R    +KPY
Sbjct:   462 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 514

 Score = 171 (65.3 bits), Expect = 6.3e-38, Sum P(2) = 6.3e-38
 Identities = 45/155 (29%), Positives = 76/155 (49%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G + K  TE  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:   136 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 195

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR 135
             H  +T+ G SSP+ VK+AD + ++ E K     L + + +  +SA  S++G +  L  L 
Sbjct:   196 HQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL- 250

Query:   136 GSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 170
             G Q  +    +L+   +  +   L  ++  H M G
Sbjct:   251 GPQYLA---LYLQLLQQTASSGNLNTLSSLHPMGG 282


>UNIPROTKB|Q92879 [details] [associations]
            symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0007286 "spermatid development" evidence=IEA] [GO:0031369
            "translation initiation factor binding" evidence=IEA] [GO:0040018
            "positive regulation of multicellular organism growth"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
            "mRNA splice site selection" evidence=ISS] [GO:0005634 "nucleus"
            evidence=NAS] [GO:0042835 "BRE binding" evidence=IDA] [GO:0016246
            "RNA interference" evidence=NAS] [GO:0007281 "germ cell
            development" evidence=NAS] [GO:0009790 "embryo development"
            evidence=NAS] [GO:0030529 "ribonucleoprotein complex" evidence=NAS]
            [GO:0000900 "translation repressor activity, nucleic acid binding"
            evidence=NAS] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0043484 "regulation of RNA
            splicing" evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
            [GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 EMBL:CH471064 GO:GO:0016246
            GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0040018 GO:GO:0003676 GO:GO:0009790 GO:GO:0030529
            GO:GO:0007281 GO:GO:0043484 GO:GO:0000900 HOVERGEN:HBG107646
            KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
            OrthoDB:EOG4N8R4X EMBL:U63289 EMBL:AF248648 EMBL:AF267533
            EMBL:AF267534 EMBL:AJ007988 EMBL:AK304430 EMBL:AB210019
            EMBL:AC090559 EMBL:BC031079 IPI:IPI00034015 IPI:IPI00218388
            IPI:IPI00218389 IPI:IPI00853009 IPI:IPI00956101
            RefSeq:NP_001020767.1 RefSeq:NP_001166110.1 RefSeq:NP_001166111.1
            RefSeq:NP_006551.1 RefSeq:NP_941989.1 UniGene:Hs.595333 PDB:2CPZ
            PDB:2DHS PDB:2RQ4 PDB:2RQC PDB:3NMR PDB:3NNA PDB:3NNC PDB:3NNH
            PDBsum:2CPZ PDBsum:2DHS PDBsum:2RQ4 PDBsum:2RQC PDBsum:3NMR
            PDBsum:3NNA PDBsum:3NNC PDBsum:3NNH ProteinModelPortal:Q92879
            SMR:Q92879 IntAct:Q92879 MINT:MINT-1382906 STRING:Q92879
            PhosphoSite:Q92879 DMDM:17374605 PaxDb:Q92879 PRIDE:Q92879
            DNASU:10658 Ensembl:ENST00000310513 Ensembl:ENST00000358597
            Ensembl:ENST00000361904 Ensembl:ENST00000395290
            Ensembl:ENST00000395292 Ensembl:ENST00000532048 GeneID:10658
            KEGG:hsa:10658 UCSC:uc001nfk.2 UCSC:uc001nfl.3 UCSC:uc001nfm.3
            UCSC:uc001nfn.3 GeneCards:GC11M047602 HGNC:HGNC:2549 HPA:CAB016114
            MIM:601074 neXtProt:NX_Q92879 PharmGKB:PA27045 InParanoid:Q92879
            PhylomeDB:Q92879 ChiTaRS:CELF1 EvolutionaryTrace:Q92879
            GenomeRNAi:10658 NextBio:40521 ArrayExpress:Q92879 Bgee:Q92879
            CleanEx:HS_CUGBP1 Genevestigator:Q92879 GermOnline:ENSG00000149187
            GO:GO:0042835 GO:GO:0006376 Uniprot:Q92879
        Length = 486

 Score = 366 (133.9 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
 Identities = 72/176 (40%), Positives = 115/176 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQVP+  +E  L  +F+++  V E+N+++D++    ++  CCFV   +R+ A +A
Sbjct:    16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN K LPG   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I+
Sbjct:    76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +ILRG    S+GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:   136 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191

 Score = 279 (103.3 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
 Identities = 57/113 (50%), Positives = 66/113 (58%)

Query:   322 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 381
             P + N N             Q EGP GANLFIYH+PQEFGDQ+L   F  FG V+SAKVF
Sbjct:   375 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 433

Query:   382 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             +DK T +SKCFGFVSY++P SAQ AI  MNG             R    +KPY
Sbjct:   434 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 486

 Score = 171 (65.3 bits), Expect = 4.0e-38, Sum P(2) = 4.0e-38
 Identities = 45/155 (29%), Positives = 76/155 (49%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G + K  TE  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:   109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 168

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR 135
             H  +T+ G SSP+ VK+AD + ++ E K     L + + +  +SA  S++G +  L  L 
Sbjct:   169 HQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL- 223

Query:   136 GSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 170
             G Q  +    +L+   +  +   L  ++  H M G
Sbjct:   224 GPQYLA---LYLQLLQQTASSGNLNTLSSLHPMGG 255


>FB|FBgn0000114 [details] [associations]
            symbol:aret "arrest" species:7227 "Drosophila melanogaster"
            [GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
            development" evidence=IMP] [GO:0007319 "negative regulation of
            oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
            binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
            formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
            evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
            evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
            "negative regulation of translation" evidence=IMP] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
            "germ cell development" evidence=IMP] [GO:0031536 "positive
            regulation of exit from mitosis" evidence=IMP] [GO:0002121
            "inter-male aggressive behavior" evidence=IMP] [GO:0007476
            "imaginal disc-derived wing morphogenesis" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
            GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
            GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
            GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
            GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
            GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
            SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
            EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
            UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
        Length = 810

 Score = 402 (146.6 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
 Identities = 83/173 (47%), Positives = 117/173 (67%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +K+FVGQVPK M E+QL  MF+E+  V  +N+++DK T  S+ CCFV   +R  A KA +
Sbjct:   357 IKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQD 416

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A HN KTL G   P+Q+K AD E  R E KLF+GML K ++E +V  LF ++G I++  +
Sbjct:   417 ALHNVKTLNGMYHPIQMKPADSE-NRNERKLFVGMLNKKLNENDVRKLFEVHGAIEECTV 475

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHK-MEGSSVPLVVKWADTEKE 185
             LR     SKGCAF+ + TK  A++A++    ++K MEG + PLVVK+ADT+KE
Sbjct:   476 LRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFADTQKE 528

 Score = 257 (95.5 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
 Identities = 51/93 (54%), Positives = 62/93 (66%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             QIEGP G NLFIYH+PQEF D +L + F  FG V+SAKVF+DK T +SKCFGFVS+++P 
Sbjct:   719 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPD 778

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             +  K +KPY
Sbjct:   779 SAQVAIKAMNGFQVGTKRLKVQLKKP-KDSKPY 810

 Score = 148 (57.2 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
 Identities = 30/95 (31%), Positives = 54/95 (56%)

Query:    90 VKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLK 148
             V Y + E +    K+F+G +PK++ E+++  +F  YG +  + +LR      SKGC F+ 
Sbjct:   345 VTYGEKEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVT 404

Query:   149 YETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 183
             + T+  AL A +A++    + G   P+ +K AD+E
Sbjct:   405 FYTRHAALKAQDALHNVKTLNGMYHPIQMKPADSE 439

 Score = 128 (50.1 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
 Identities = 26/90 (28%), Positives = 51/90 (56%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K + E  +  +F+    ++E  +++D+  ++  C FV   ++  A  A+   
Sbjct:   445 KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVT 504

Query:    76 HNK-KTLPGASSPLQVKYADGELERLEHKL 104
              ++ K + G +SPL VK+AD + E+ + K+
Sbjct:   505 LSQNKIMEGCTSPLVVKFADTQKEKEQKKI 534


>UNIPROTKB|Q5F3T7 [details] [associations]
            symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
            EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
            RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
            ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
            GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
            HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
            NextBio:20813455 Uniprot:Q5F3T7
        Length = 489

 Score = 363 (132.8 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
 Identities = 72/176 (40%), Positives = 114/176 (64%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQVP+   E  L  +F+++  V E+N+++D++    ++  CCFV   +R+ A +A
Sbjct:    16 IKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN K LPG   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I+
Sbjct:    76 QNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIE 135

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +ILRG    S+GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:   136 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKD 191

 Score = 277 (102.6 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
 Identities = 54/93 (58%), Positives = 62/93 (66%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP GANLFIYH+PQEFGDQ+L   F  FG V+SAKVF+DK T +SKCFGFVSY++P 
Sbjct:   397 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 456

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    +KPY
Sbjct:   457 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 489

 Score = 170 (64.9 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
 Identities = 45/155 (29%), Positives = 75/155 (48%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G + K   E  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:   109 KLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 168

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR 135
             H  +T+ G SSP+ VK+AD + ++ E K     L + + +  +SA  S++G +  L  L 
Sbjct:   169 HQAQTMEGCSSPIVVKFADTQKDK-EQKRIAQQLQQQMQQ--ISAA-SVWGNLAGLNTL- 223

Query:   136 GSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 170
             G Q  +     L+ +T   +   L  ++  H M G
Sbjct:   224 GPQYLALYLQLLQ-QTAAASSGNLNTLSSLHPMGG 257


>RGD|1563168 [details] [associations]
            symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
            "spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
            evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
            "sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
            GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
            OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
            ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
            UCSC:RGD:1563168 Uniprot:D4A916
        Length = 494

 Score = 389 (142.0 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 77/172 (44%), Positives = 113/172 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLFVGQ+P+H+ E  L  +F++F  + E+ +IKDK T   + C F+   +R  A KA +
Sbjct:     7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H +KTLPG + P+QVK AD E    + KLF+GML K  ++ +V  +F  +GTI +  +
Sbjct:    67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             LRG   TSKGCAF+K++T  +A AA+  ++    + G+S  LVVK+ADTEKE
Sbjct:   127 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178

 Score = 250 (93.1 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 74/224 (33%), Positives = 99/224 (44%)

Query:   218 GYAP-PYNGYGYQASGS-Y--GLMQYRLPPM--QNQPGFHGIIPPVNQGNAMRGASPDLS 271
             GY+P P    G  A  + Y  G+  Y    +  +   G   I+P  +    M  A+   +
Sbjct:   281 GYSPVPTQPTGQPAPDALYPNGVHPYPDEALSAERSAGEAPIMPQTHSWLVMLSAAQSPA 340

Query:   272 SNMGPRNYAMPPSGFVGSGYPAVPGLQYP-MPYPGGMLGHRPLNNSPGSVSPAVANSNPX 330
             + + P   A        + YPA   L  P  P P  ++  +P         P        
Sbjct:   341 APVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQP---------PPPPQQQQQ 391

Query:   331 XXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSK 390
                        Q + P G N+FIYH+PQEF D E+   F  FG V+SAKVFVD+AT  SK
Sbjct:   392 QQQQQQQQQQQQ-QRPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 450

Query:   391 CFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             CFGFVS+++PASAQ AI  MNG             R    N+PY
Sbjct:   451 CFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 494

 Score = 174 (66.3 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
 Identities = 35/84 (41%), Positives = 49/84 (58%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  T+  +  MF+ F  +DE  +++     +  C FV   +  EA  A+N  
Sbjct:    96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTL 155

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             H+ +TLPGASS L VK+AD E ER
Sbjct:   156 HSSRTLPGASSSLVVKFADTEKER 179

 Score = 76 (31.8 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
 Identities = 18/63 (28%), Positives = 36/63 (57%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 161
             +FI  LP+  +++E+  +F  +G +   ++   R + Q SK   F+ ++    A AA++A
Sbjct:   411 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 469

Query:   162 ING 164
             +NG
Sbjct:   470 MNG 472


>UNIPROTKB|E1C045 [details] [associations]
            symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006376 "mRNA splice site selection"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
            GeneTree:ENSGT00560000076837 IPI:IPI00587312 EMBL:AADN02039408
            EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
            EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
            EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
            EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
            EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
            EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
            EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
            EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
            EMBL:AADN02039433 ProteinModelPortal:E1C045
            Ensembl:ENSGALT00000010858 ArrayExpress:E1C045 Uniprot:E1C045
        Length = 488

 Score = 363 (132.8 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 71/176 (40%), Positives = 116/176 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQ+P+  +E +L  +F+ +  V ++N+++D++    ++  CCFV   +R+ A +A
Sbjct:    16 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN KTLPG   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I+
Sbjct:    76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 135

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +ILRG    S+GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:   136 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191

 Score = 276 (102.2 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 53/93 (56%), Positives = 62/93 (66%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP GANLFIYH+PQEFGDQ++   F  FG V+SAKVF+DK T +SKCFGFVSY++P 
Sbjct:   396 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 455

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    +KPY
Sbjct:   456 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 488

 Score = 152 (58.6 bits), Expect = 2.2e-35, Sum P(2) = 2.2e-35
 Identities = 30/89 (33%), Positives = 48/89 (53%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G V K   E  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:   109 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAM 168

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             H  +T+ G SSP+ VK+AD + ++ + +L
Sbjct:   169 HQSQTMEGCSSPIVVKFADTQKDKEQRRL 197


>UNIPROTKB|F1NZY6 [details] [associations]
            symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GeneTree:ENSGT00560000076837 EMBL:AADN02039408
            EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
            EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
            EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
            EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
            EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
            EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
            EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
            EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
            EMBL:AADN02039433 IPI:IPI00971429 Ensembl:ENSGALT00000010859
            ArrayExpress:F1NZY6 Uniprot:F1NZY6
        Length = 484

 Score = 363 (132.8 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 71/176 (40%), Positives = 116/176 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQ+P+  +E +L  +F+ +  V ++N+++D++    ++  CCFV   +R+ A +A
Sbjct:    16 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN KTLPG   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I+
Sbjct:    76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 135

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +ILRG    S+GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:   136 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191

 Score = 276 (102.2 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 53/93 (56%), Positives = 62/93 (66%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP GANLFIYH+PQEFGDQ++   F  FG V+SAKVF+DK T +SKCFGFVSY++P 
Sbjct:   392 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 451

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    +KPY
Sbjct:   452 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 484

 Score = 152 (58.6 bits), Expect = 2.1e-35, Sum P(2) = 2.1e-35
 Identities = 30/89 (33%), Positives = 48/89 (53%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G V K   E  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:   109 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAM 168

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             H  +T+ G SSP+ VK+AD + ++ + +L
Sbjct:   169 HQSQTMEGCSSPIVVKFADTQKDKEQRRL 197


>UNIPROTKB|F1P017 [details] [associations]
            symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006376 "mRNA splice site selection"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
            GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:AADN02039408
            EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
            EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
            EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
            EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
            EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
            EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
            EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
            EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
            EMBL:AADN02039433 IPI:IPI00820413 Ensembl:ENSGALT00000040039
            ArrayExpress:F1P017 Uniprot:F1P017
        Length = 494

 Score = 363 (132.8 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 71/176 (40%), Positives = 116/176 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQ+P+  +E +L  +F+ +  V ++N+++D++    ++  CCFV   +R+ A +A
Sbjct:    22 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 81

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN KTLPG   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I+
Sbjct:    82 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 141

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +ILRG    S+GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:   142 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 197

 Score = 276 (102.2 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 53/93 (56%), Positives = 62/93 (66%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP GANLFIYH+PQEFGDQ++   F  FG V+SAKVF+DK T +SKCFGFVSY++P 
Sbjct:   402 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 461

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    +KPY
Sbjct:   462 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 494

 Score = 152 (58.6 bits), Expect = 2.5e-35, Sum P(2) = 2.5e-35
 Identities = 30/89 (33%), Positives = 48/89 (53%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G V K   E  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:   115 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAM 174

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             H  +T+ G SSP+ VK+AD + ++ + +L
Sbjct:   175 HQSQTMEGCSSPIVVKFADTQKDKEQRRL 203


>UNIPROTKB|F1P674 [details] [associations]
            symbol:CELF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13207 GeneTree:ENSGT00560000076837 CTD:10659
            OMA:TMRNEEL EMBL:AAEX03001288 EMBL:AAEX03001289 EMBL:AAEX03001290
            RefSeq:XP_003433765.1 ProteinModelPortal:F1P674
            Ensembl:ENSCAFT00000008021 GeneID:607310 KEGG:cfa:607310
            Uniprot:F1P674
        Length = 488

 Score = 363 (132.8 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 71/176 (40%), Positives = 116/176 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQ+P+  +E +L  +F+ +  V ++N+++D++    ++  CCFV   +R+ A +A
Sbjct:    16 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN KTLPG   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I+
Sbjct:    76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 135

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +ILRG    S+GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:   136 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191

 Score = 276 (102.2 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 53/93 (56%), Positives = 62/93 (66%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP GANLFIYH+PQEFGDQ++   F  FG V+SAKVF+DK T +SKCFGFVSY++P 
Sbjct:   396 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 455

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    +KPY
Sbjct:   456 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 488

 Score = 152 (58.6 bits), Expect = 2.2e-35, Sum P(2) = 2.2e-35
 Identities = 30/89 (33%), Positives = 48/89 (53%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G V K   E  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:   109 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAM 168

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             H  +T+ G SSP+ VK+AD + ++ + +L
Sbjct:   169 HQSQTMEGCSSPIVVKFADTQKDKEQRRL 197


>UNIPROTKB|E9PC62 [details] [associations]
            symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006376 "mRNA splice site selection"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC026887 KO:K13207
            GO:GO:0006376 CTD:10659 EMBL:AL157704 EMBL:AL136320 IPI:IPI00845479
            RefSeq:NP_006552.3 UniGene:Hs.309288 GeneID:10659 KEGG:hsa:10659
            HGNC:HGNC:2550 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
            OMA:TMRNEEL EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:E9PC62
            Ensembl:ENST00000450189 Ensembl:ENST00000542579 UCSC:uc001ikl.4
            Uniprot:E9PC62
        Length = 521

 Score = 363 (132.8 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 71/176 (40%), Positives = 116/176 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQ+P+  +E +L  +F+ +  V ++N+++D++    ++  CCFV   +R+ A +A
Sbjct:    47 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 106

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN KTLPG   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I+
Sbjct:   107 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 166

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +ILRG    S+GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:   167 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 222

 Score = 276 (102.2 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 53/93 (56%), Positives = 62/93 (66%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP GANLFIYH+PQEFGDQ++   F  FG V+SAKVF+DK T +SKCFGFVSY++P 
Sbjct:   429 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 488

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    +KPY
Sbjct:   489 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 521

 Score = 152 (58.6 bits), Expect = 3.7e-35, Sum P(2) = 3.7e-35
 Identities = 30/89 (33%), Positives = 48/89 (53%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G V K   E  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:   140 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAM 199

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             H  +T+ G SSP+ VK+AD + ++ + +L
Sbjct:   200 HQSQTMEGCSSPIVVKFADTQKDKEQRRL 228


>UNIPROTKB|O95319 [details] [associations]
            symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
            evidence=TAS] [GO:0008016 "regulation of heart contraction"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0008016 GO:GO:0003723
            GO:GO:0006396 EMBL:CH471072 EMBL:AC026887 HSSP:Q92879
            HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 CTD:10659
            EMBL:AF090694 EMBL:AF090693 EMBL:AF036956 EMBL:U69546 EMBL:AF295068
            EMBL:AF295063 EMBL:AF295064 EMBL:AF295065 EMBL:AF295066
            EMBL:AF295067 EMBL:AF314199 EMBL:AF432906 EMBL:AK316354
            EMBL:AL157704 EMBL:AL136320 EMBL:BC036391 IPI:IPI00410277
            IPI:IPI00607544 IPI:IPI00845479 IPI:IPI00845480 IPI:IPI00853320
            RefSeq:NP_001020247.1 RefSeq:NP_001020248.1 RefSeq:NP_001077060.1
            RefSeq:NP_006552.3 UniGene:Hs.309288 ProteinModelPortal:O95319
            SMR:O95319 IntAct:O95319 MINT:MINT-2868664 STRING:O95319
            PhosphoSite:O95319 UCD-2DPAGE:O95319 PaxDb:O95319 PRIDE:O95319
            Ensembl:ENST00000315874 Ensembl:ENST00000354440
            Ensembl:ENST00000379261 Ensembl:ENST00000399850
            Ensembl:ENST00000416382 Ensembl:ENST00000417956
            Ensembl:ENST00000427450 GeneID:10659 KEGG:hsa:10659 UCSC:uc001iki.4
            UCSC:uc001ikk.2 UCSC:uc001iko.4 UCSC:uc001ikp.4 UCSC:uc010qbj.1
            GeneCards:GC10P011049 HGNC:HGNC:2550 MIM:602538 neXtProt:NX_O95319
            PharmGKB:PA27046 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
            ArrayExpress:O95319 Bgee:O95319 CleanEx:HS_CUGBP2
            Genevestigator:O95319 Uniprot:O95319
        Length = 508

 Score = 363 (132.8 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 71/176 (40%), Positives = 116/176 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQ+P+  +E +L  +F+ +  V ++N+++D++    ++  CCFV   +R+ A +A
Sbjct:    40 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 99

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN KTLPG   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I+
Sbjct:   100 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 159

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +ILRG    S+GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:   160 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 215

 Score = 276 (102.2 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 53/93 (56%), Positives = 62/93 (66%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP GANLFIYH+PQEFGDQ++   F  FG V+SAKVF+DK T +SKCFGFVSY++P 
Sbjct:   416 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 475

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    +KPY
Sbjct:   476 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 508

 Score = 152 (58.6 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
 Identities = 30/89 (33%), Positives = 48/89 (53%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G V K   E  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:   133 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAM 192

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             H  +T+ G SSP+ VK+AD + ++ + +L
Sbjct:   193 HQSQTMEGCSSPIVVKFADTQKDKEQRRL 221


>UNIPROTKB|Q5VZZ6 [details] [associations]
            symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
            EMBL:AL157704 EMBL:AL136320 IPI:IPI00845480 UniGene:Hs.309288
            HGNC:HGNC:2550 EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:Q5VZZ6
            Ensembl:ENST00000354897 Uniprot:Q5VZZ6
        Length = 498

 Score = 363 (132.8 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 71/176 (40%), Positives = 116/176 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQ+P+  +E +L  +F+ +  V ++N+++D++    ++  CCFV   +R+ A +A
Sbjct:    16 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN KTLPG   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I+
Sbjct:    76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 135

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +ILRG    S+GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:   136 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191

 Score = 276 (102.2 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 53/93 (56%), Positives = 62/93 (66%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP GANLFIYH+PQEFGDQ++   F  FG V+SAKVF+DK T +SKCFGFVSY++P 
Sbjct:   406 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 465

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    +KPY
Sbjct:   466 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 498

 Score = 152 (58.6 bits), Expect = 2.6e-35, Sum P(2) = 2.6e-35
 Identities = 30/89 (33%), Positives = 48/89 (53%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G V K   E  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:   109 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAM 168

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             H  +T+ G SSP+ VK+AD + ++ + +L
Sbjct:   169 HQSQTMEGCSSPIVVKFADTQKDKEQRRL 197


>MGI|MGI:1338822 [details] [associations]
            symbol:Celf2 "CUGBP, Elav-like family member 2"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006376
            "mRNA splice site selection" evidence=IDA] [GO:0006397 "mRNA
            processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1338822 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
            HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 GO:GO:0006376
            GeneTree:ENSGT00560000076837 CTD:10659 ChiTaRS:CELF2 EMBL:AF090696
            EMBL:AF090697 EMBL:Y18298 EMBL:AK137292 EMBL:AK151818 EMBL:AK152628
            EMBL:AK153267 EMBL:AK160861 EMBL:AK161349 EMBL:AK164914
            EMBL:AL929240 EMBL:AL845492 EMBL:AL845515 EMBL:BC026856
            IPI:IPI00129146 IPI:IPI00651950 IPI:IPI00750780 IPI:IPI00751703
            IPI:IPI00756899 IPI:IPI00853748 IPI:IPI00853844 IPI:IPI00853921
            IPI:IPI00854018 IPI:IPI00854021 RefSeq:NP_001103698.1
            RefSeq:NP_001103699.1 RefSeq:NP_001103700.1 RefSeq:NP_001103701.1
            RefSeq:NP_001103702.1 RefSeq:NP_001153764.1 RefSeq:NP_001153765.1
            RefSeq:NP_034290.2 UniGene:Mm.398543 ProteinModelPortal:Q9Z0H4
            SMR:Q9Z0H4 STRING:Q9Z0H4 PhosphoSite:Q9Z0H4 PaxDb:Q9Z0H4
            PRIDE:Q9Z0H4 Ensembl:ENSMUST00000002176 Ensembl:ENSMUST00000100429
            Ensembl:ENSMUST00000114924 Ensembl:ENSMUST00000114927
            Ensembl:ENSMUST00000114934 GeneID:14007 KEGG:mmu:14007
            UCSC:uc008ign.1 UCSC:uc008igo.1 UCSC:uc008igp.1 UCSC:uc008igq.2
            UCSC:uc008igs.2 UCSC:uc008igt.2 UCSC:uc008igv.2 InParanoid:Q9Z0H4
            OMA:TMRNEEL NextBio:284908 Bgee:Q9Z0H4 CleanEx:MM_CUGBP2
            Genevestigator:Q9Z0H4 Uniprot:Q9Z0H4
        Length = 508

 Score = 363 (132.8 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 71/176 (40%), Positives = 116/176 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQ+P+  +E +L  +F+ +  V ++N+++D++    ++  CCFV   +R+ A +A
Sbjct:    40 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 99

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN KTLPG   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I+
Sbjct:   100 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 159

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +ILRG    S+GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:   160 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 215

 Score = 276 (102.2 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 53/93 (56%), Positives = 62/93 (66%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP GANLFIYH+PQEFGDQ++   F  FG V+SAKVF+DK T +SKCFGFVSY++P 
Sbjct:   416 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 475

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    +KPY
Sbjct:   476 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 508

 Score = 152 (58.6 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
 Identities = 30/89 (33%), Positives = 48/89 (53%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G V K   E  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:   133 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAM 192

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             H  +T+ G SSP+ VK+AD + ++ + +L
Sbjct:   193 HQSQTMEGCSSPIVVKFADTQKDKEQRRL 221


>RGD|68347 [details] [associations]
            symbol:Celf2 "CUGBP, Elav-like family member 2" species:10116
           "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
           [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634 "nucleus"
           evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
           [GO:0006376 "mRNA splice site selection" evidence=IEA;ISO]
           InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
           Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360 RGD:68347
           GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
           GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
           eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
           GO:GO:0006376 GeneTree:ENSGT00560000076837 CTD:10659 OMA:TMRNEEL
           EMBL:AF090695 EMBL:AJ010351 EMBL:AJ010386 EMBL:BC129096
           IPI:IPI00212483 IPI:IPI00781372 IPI:IPI00854036 IPI:IPI00854042
           RefSeq:NP_058893.2 UniGene:Rn.162247 ProteinModelPortal:Q792H5
           SMR:Q792H5 STRING:Q792H5 PhosphoSite:Q792H5 PRIDE:Q792H5
           Ensembl:ENSRNOT00000023436 GeneID:29428 KEGG:rno:29428
           InParanoid:Q792H5 NextBio:609142 ArrayExpress:Q792H5
           Genevestigator:Q792H5 Uniprot:Q792H5
        Length = 508

 Score = 363 (132.8 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 71/176 (40%), Positives = 116/176 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQ+P+  +E +L  +F+ +  V ++N+++D++    ++  CCFV   +R+ A +A
Sbjct:    40 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 99

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN KTLPG   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I+
Sbjct:   100 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 159

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +ILRG    S+GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:   160 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 215

 Score = 276 (102.2 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 53/93 (56%), Positives = 62/93 (66%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP GANLFIYH+PQEFGDQ++   F  FG V+SAKVF+DK T +SKCFGFVSY++P 
Sbjct:   416 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 475

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    +KPY
Sbjct:   476 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 508

 Score = 152 (58.6 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
 Identities = 30/89 (33%), Positives = 48/89 (53%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G V K   E  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:   133 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAM 192

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             H  +T+ G SSP+ VK+AD + ++ + +L
Sbjct:   193 HQSQTMEGCSSPIVVKFADTQKDKEQRRL 221


>ZFIN|ZDB-GENE-030826-35 [details] [associations]
            symbol:celf2 "cugbp, Elav-like family member 2"
            species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030826-35 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
            EMBL:AL935165 EMBL:BX511190 EMBL:CABZ01029785 EMBL:CABZ01029786
            EMBL:CABZ01029787 IPI:IPI00994559 Ensembl:ENSDART00000129320
            ArrayExpress:E7F7K3 Bgee:E7F7K3 Uniprot:E7F7K3
        Length = 585

 Score = 369 (135.0 bits), Expect = 2.1e-60, Sum P(2) = 2.1e-60
 Identities = 84/227 (37%), Positives = 129/227 (56%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQ+P+  +E +L  +F+ +  V ++NI++D++    ++  CCFV   +R+ A +A
Sbjct:   115 IKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAALEA 174

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN KTL G   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS YG I+
Sbjct:   175 QNALHNIKTLTGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPYGQIE 234

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXX 189
             + +ILRG    S+GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+    
Sbjct:   235 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPMVVKFADTQKDKEQR 294

Query:   190 XXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGL 236
                          N+ S   SL G    G  P Y     QA+ S  L
Sbjct:   295 RLQQQLAQQMQQLNSASAWGSLTGLT--GLTPQYLALLQQATSSSNL 339

 Score = 275 (101.9 bits), Expect = 2.1e-60, Sum P(2) = 2.1e-60
 Identities = 53/93 (56%), Positives = 62/93 (66%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP GANLFIYH+PQEFGDQ++   F  FG V+SAKVF+DK T +SKCFGFVSY++P 
Sbjct:   493 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 552

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    +KPY
Sbjct:   553 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 585


>UNIPROTKB|Q8N6W0 [details] [associations]
            symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
            KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
            EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
            EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
            IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
            UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
            SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
            PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
            Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
            UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
            HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
            InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
            EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
            ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
            Genevestigator:Q8N6W0 Uniprot:Q8N6W0
        Length = 485

 Score = 376 (137.4 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
 Identities = 77/173 (44%), Positives = 111/173 (64%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLFVGQ+P+H+ E  L  +F++F  + E+ ++KD  T   + C F+   +R  A KA  
Sbjct:    45 IKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQT 104

Query:    74 ACHNKKTLPGASSPLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
             A H +KTLPG + P+QVK AD E     + KLF+GML K  SE +V  LF  +G I +  
Sbjct:   105 ALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECT 164

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +LRG   +SKGCAF+K+ +  +A AA+ A++G   M G+S  LVVK+ADT+KE
Sbjct:   165 VLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 217

 Score = 260 (96.6 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
 Identities = 71/195 (36%), Positives = 98/195 (50%)

Query:   242 PPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAV-PGLQYP 300
             PP+       G++ P+  G A  G  P    +  P    +  +G V   YPA  P +   
Sbjct:   302 PPLLGTTAVPGLVAPITNGFA--GVVPFPGGH--PALETVYANGLVP--YPAQSPTVAET 355

Query:   301 M-PYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQE 359
             + P   G+  +  +  +  +++P +A+S P            Q EGP G NLFIYH+PQE
Sbjct:   356 LHPAFSGVQQYTAMYPT-AAITP-IAHSVPQPPPLLQQQ---QREGPEGCNLFIYHLPQE 410

Query:   360 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXX 419
             FGD EL   F  FG ++S+KVF+D+AT  SKCFGFVS+++PASAQ AI  MNG       
Sbjct:   411 FGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR 470

Query:   420 XXXXXXRDNKQNKPY 434
                   R      PY
Sbjct:   471 LKVQLKRPKDPGHPY 485

 Score = 176 (67.0 bits), Expect = 3.8e-35, Sum P(2) = 3.8e-35
 Identities = 43/127 (33%), Positives = 66/127 (51%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  +E  +L +F+ F ++DE  +++     +  C FV   S  EA  A++A 
Sbjct:   135 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHAL 194

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             H  +T+PGASS L VK+AD + ER   ++   +G L   +    ++  FS Y      Q 
Sbjct:   195 HGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL--GILTPSLTLPFSPYSAYA--QA 250

Query:   134 LRGSQQT 140
             L   Q T
Sbjct:   251 LMQQQTT 257


>UNIPROTKB|Q7T2T1 [details] [associations]
            symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
            KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 EMBL:AY288985
            EMBL:AY288986 IPI:IPI00574339 IPI:IPI00587312 RefSeq:NP_989591.1
            UniGene:Gga.4919 ProteinModelPortal:Q7T2T1 SMR:Q7T2T1 STRING:Q7T2T1
            PRIDE:Q7T2T1 GeneID:374111 KEGG:gga:374111 CTD:10659
            InParanoid:Q7T2T1 NextBio:20813628 Uniprot:Q7T2T1
        Length = 484

 Score = 360 (131.8 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
 Identities = 71/176 (40%), Positives = 115/176 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K FVGQ+P+  +E +L  +F+ +  V ++N+++D++    ++  CCFV   +R+ A +A
Sbjct:    16 IKTFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN KTLPG   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I+
Sbjct:    76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 135

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +ILRG    S+GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:   136 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191

 Score = 276 (102.2 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
 Identities = 53/93 (56%), Positives = 62/93 (66%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP GANLFIYH+PQEFGDQ++   F  FG V+SAKVF+DK T +SKCFGFVSY++P 
Sbjct:   392 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 451

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    +KPY
Sbjct:   452 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 484

 Score = 152 (58.6 bits), Expect = 2.1e-35, Sum P(2) = 2.1e-35
 Identities = 30/89 (33%), Positives = 48/89 (53%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G V K   E  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:   109 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAM 168

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             H  +T+ G SSP+ VK+AD + ++ + +L
Sbjct:   169 HQSQTMEGCSSPIVVKFADTQKDKEQRRL 197


>UNIPROTKB|F1PXQ8 [details] [associations]
            symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
            GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
            EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
            GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
        Length = 485

 Score = 369 (135.0 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
 Identities = 76/173 (43%), Positives = 111/173 (64%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLFVGQ+P+++ E  L  +F++F  + E+ ++KD  T   + C F+   +R  A KA  
Sbjct:    45 IKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQT 104

Query:    74 ACHNKKTLPGASSPLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
             A H +KTLPG + P+QVK AD E     + KLF+GML K  SE +V  LF  +G I +  
Sbjct:   105 ALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECT 164

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +LRG   +SKGCAF+K+ +  +A AA+ A++G   M G+S  LVVK+ADT+KE
Sbjct:   165 VLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 217

 Score = 262 (97.3 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
 Identities = 71/195 (36%), Positives = 98/195 (50%)

Query:   242 PPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAV-PGLQYP 300
             PP+       G++ P+  G A  G  P    +  P    +  +G V   YPA  P +   
Sbjct:   302 PPLLGTTAVPGLVAPITNGFA--GVVPFPGGH--PALETVYANGLVP--YPAQSPTVAET 355

Query:   301 M-PYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQE 359
             + P   G+  +  +  +  +++P +A+S P            Q EGP G NLFIYH+PQE
Sbjct:   356 LHPAFSGVQQYTAMYPT-AAITP-IAHSVPQPPPLLQQQ---QREGPEGCNLFIYHLPQE 410

Query:   360 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXX 419
             FGD EL   F  FG ++S+KVF+D+AT  SKCFGFVS+++PASAQ AI  MNG       
Sbjct:   411 FGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKR 470

Query:   420 XXXXXXRDNKQNKPY 434
                   R      PY
Sbjct:   471 LKVQLKRPKDPGHPY 485

 Score = 176 (67.0 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
 Identities = 43/127 (33%), Positives = 66/127 (51%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  +E  +L +F+ F ++DE  +++     +  C FV   S  EA  A++A 
Sbjct:   135 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHAL 194

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             H  +T+PGASS L VK+AD + ER   ++   +G L   +    ++  FS Y      Q 
Sbjct:   195 HGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL--GILTPSLTLPFSPYSAYA--QA 250

Query:   134 LRGSQQT 140
             L   Q T
Sbjct:   251 LMQQQTT 257


>UNIPROTKB|Q5R995 [details] [associations]
            symbol:CELF1 "CUGBP Elav-like family member 1" species:9601
            "Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0043484
            "regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
            HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 EMBL:CR859496
            RefSeq:NP_001125976.1 UniGene:Pab.4290 ProteinModelPortal:Q5R995
            SMR:Q5R995 PRIDE:Q5R995 GeneID:100172914 KEGG:pon:100172914
            InParanoid:Q5R995 Uniprot:Q5R995
        Length = 513

 Score = 352 (129.0 bits), Expect = 8.6e-60, Sum P(2) = 8.6e-60
 Identities = 70/176 (39%), Positives = 113/176 (64%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQVP+  +E  L  +F+++  V E+N+++D++    ++  CCFV   +R+ A +A
Sbjct:    43 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
              NA HN K LPG   P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I+
Sbjct:   103 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 162

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +IL G    S+GCA + + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:   163 ECRILWGPDGLSRGCALVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 218

 Score = 279 (103.3 bits), Expect = 8.6e-60, Sum P(2) = 8.6e-60
 Identities = 57/113 (50%), Positives = 66/113 (58%)

Query:   322 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 381
             P + N N             Q EGP GANLFIYH+PQEFGDQ+L   F  FG V+SAKVF
Sbjct:   402 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 460

Query:   382 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             +DK T +SKCFGFVSY++P SAQ AI  MNG             R    +KPY
Sbjct:   461 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 513

 Score = 160 (61.4 bits), Expect = 8.9e-37, Sum P(2) = 8.9e-37
 Identities = 44/155 (28%), Positives = 74/155 (47%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G + K  TE  +  MF  F  ++E  I+      +  C  V   +R  A  A+ A 
Sbjct:   136 KLFIGMISKKCTENDIRVMFSSFGQIEECRILWGPDGLSRGCALVTFTTRAMAQTAIKAM 195

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR 135
             H  +T+ G SSP+ VK+AD + ++ E K     L + + +  +SA  S++G +  L  L 
Sbjct:   196 HQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL- 250

Query:   136 GSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 170
             G Q  +    +L+   +  +   L  ++  H M G
Sbjct:   251 GPQYLA---LYLQLLQQTASSGNLNTLSSLHPMGG 282


>UNIPROTKB|E2RGA8 [details] [associations]
            symbol:CELF3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 OMA:HSAYLNP EMBL:AAEX03011056
            Ensembl:ENSCAFT00000020318 Uniprot:E2RGA8
        Length = 539

 Score = 361 (132.1 bits), Expect = 2.7e-59, Sum P(2) = 2.7e-59
 Identities = 72/166 (43%), Positives = 107/166 (64%)

Query:    21 QVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKK 79
             Q+P+H+ E  L  +F++F  + E+ +IKDK T   + C F+   +R  A KA +A H +K
Sbjct:    90 QIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQK 149

Query:    80 TLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ 139
             TLPG + P+QVK AD E    + KLF+GML K  ++ +V  +F  +GTI +  +LRG   
Sbjct:   150 TLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG 209

Query:   140 TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             TSKGCAF+K++T  +A AA+  ++    + G+S  LVVK+ADTEKE
Sbjct:   210 TSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 255

 Score = 268 (99.4 bits), Expect = 2.7e-59, Sum P(2) = 2.7e-59
 Identities = 72/188 (38%), Positives = 87/188 (46%)

Query:   249 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQ-YPMPYPGG 306
             G +G  P   Q       +PD     G   Y A  P+  V     A  G+Q Y   YP  
Sbjct:   355 GVNGYSPVPTQPTGQ--PAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAA 412

Query:   307 MLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELG 366
                  P    P ++  A     P            Q EGP G N+FIYH+PQEF D E+ 
Sbjct:   413 YSLVAPAFPQPPALV-AQQPPPPPQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEIL 471

Query:   367 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXR 426
               F  FG V+SAKVFVD+AT  SKCFGFVS+++PASAQ AI  MNG             R
Sbjct:   472 QMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 531

Query:   427 DNKQNKPY 434
                 N+PY
Sbjct:   532 PKDANRPY 539

 Score = 174 (66.3 bits), Expect = 7.1e-36, Sum P(2) = 7.1e-36
 Identities = 35/84 (41%), Positives = 49/84 (58%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  T+  +  MF+ F  +DE  +++     +  C FV   +  EA  A+N  
Sbjct:   173 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTL 232

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             H+ +TLPGASS L VK+AD E ER
Sbjct:   233 HSSRTLPGASSSLVVKFADTEKER 256

 Score = 76 (31.8 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
 Identities = 18/63 (28%), Positives = 36/63 (57%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 161
             +FI  LP+  +++E+  +F  +G +   ++   R + Q SK   F+ ++    A AA++A
Sbjct:   456 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 514

Query:   162 ING 164
             +NG
Sbjct:   515 MNG 517


>UNIPROTKB|F1ST15 [details] [associations]
            symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
            "spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
            GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
            EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
        Length = 465

 Score = 361 (132.1 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
 Identities = 72/166 (43%), Positives = 107/166 (64%)

Query:    21 QVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKK 79
             Q+P+H+ E  L  +F++F  + E+ +IKDK T   + C F+   +R  A KA +A H +K
Sbjct:    14 QIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQK 73

Query:    80 TLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ 139
             TLPG + P+QVK AD E    + KLF+GML K  ++ +V  +F  +GTI +  +LRG   
Sbjct:    74 TLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG 133

Query:   140 TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             TSKGCAF+K++T  +A AA+  ++    + G+S  LVVK+ADTEKE
Sbjct:   134 TSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 179

 Score = 263 (97.6 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
 Identities = 71/189 (37%), Positives = 86/189 (45%)

Query:   249 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQ-YPMPYPGG 306
             G +G  P   Q       +PD     G   Y A  P+  V     A  G+Q Y   YP  
Sbjct:   279 GVNGYSPVPTQPTGQ--PAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAA 336

Query:   307 MLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQI-EGPPGANLFIYHIPQEFGDQEL 365
                  P    P ++        P            Q  EGP G N+FIYH+PQEF D E+
Sbjct:   337 YSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEI 396

Query:   366 GNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXX 425
                F  FG V+SAKVFVD+AT  SKCFGFVS+++PASAQ AI  MNG             
Sbjct:   397 LQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 456

Query:   426 RDNKQNKPY 434
             R    N+PY
Sbjct:   457 RPKDANRPY 465

 Score = 174 (66.3 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
 Identities = 35/84 (41%), Positives = 49/84 (58%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  T+  +  MF+ F  +DE  +++     +  C FV   +  EA  A+N  
Sbjct:    97 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTL 156

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             H+ +TLPGASS L VK+AD E ER
Sbjct:   157 HSSRTLPGASSSLVVKFADTEKER 180

 Score = 76 (31.8 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
 Identities = 18/63 (28%), Positives = 36/63 (57%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 161
             +FI  LP+  +++E+  +F  +G +   ++   R + Q SK   F+ ++    A AA++A
Sbjct:   382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 440

Query:   162 ING 164
             +NG
Sbjct:   441 MNG 443


>UNIPROTKB|H0Y623 [details] [associations]
            symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
            EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
            PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
        Length = 466

 Score = 360 (131.8 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
 Identities = 73/166 (43%), Positives = 108/166 (65%)

Query:    21 QVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKK 79
             Q+P+H+ E  L  +F++F  + E+ +IKDK T   + C F+   +R  A KA +A H +K
Sbjct:    15 QIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQK 74

Query:    80 TLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ 139
             TLPG + P+QVK AD E  R + KLF+GML K  ++ +V  +F  +GTI +  +LRG   
Sbjct:    75 TLPGMNRPIQVKPADSE-SRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG 133

Query:   140 TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             TSKGCAF+K++T  +A AA+  ++    + G+S  LVVK+ADTEKE
Sbjct:   134 TSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 179

 Score = 261 (96.9 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
 Identities = 71/190 (37%), Positives = 86/190 (45%)

Query:   249 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQ-YPMPYPGG 306
             G +G  P   Q       +PD     G   Y A  P+  V     A  G+Q Y   YP  
Sbjct:   279 GVNGYSPVPTQPTGQ--PAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAA 336

Query:   307 MLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQI--EGPPGANLFIYHIPQEFGDQE 364
                  P    P ++        P            Q   EGP G N+FIYH+PQEF D E
Sbjct:   337 YSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSE 396

Query:   365 LGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXX 424
             +   F  FG V+SAKVFVD+AT  SKCFGFVS+++PASAQ AI  MNG            
Sbjct:   397 ILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 456

Query:   425 XRDNKQNKPY 434
              R    N+PY
Sbjct:   457 KRPKDANRPY 466

 Score = 174 (66.3 bits), Expect = 3.3e-35, Sum P(2) = 3.3e-35
 Identities = 35/84 (41%), Positives = 49/84 (58%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  T+  +  MF+ F  +DE  +++     +  C FV   +  EA  A+N  
Sbjct:    97 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTL 156

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             H+ +TLPGASS L VK+AD E ER
Sbjct:   157 HSSRTLPGASSSLVVKFADTEKER 180

 Score = 76 (31.8 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
 Identities = 18/63 (28%), Positives = 36/63 (57%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 161
             +FI  LP+  +++E+  +F  +G +   ++   R + Q SK   F+ ++    A AA++A
Sbjct:   383 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 441

Query:   162 ING 164
             +NG
Sbjct:   442 MNG 444


>ZFIN|ZDB-GENE-050208-746 [details] [associations]
            symbol:celf5 "cugbp, Elav-like family member 5"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
            EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
            Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
        Length = 597

 Score = 370 (135.3 bits), Expect = 2.1e-58, Sum P(2) = 2.1e-58
 Identities = 76/181 (41%), Positives = 115/181 (63%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLF+GQ+P+++ E  L  +F++F  + E+ ++KD+ T   + C F+   +R+ A KA N
Sbjct:   136 IKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQN 195

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H +KTLPG + P+QVK AD E    + KLF+GML K  +E +V  LF  YG I++  +
Sbjct:   196 ALHEQKTLPGMTRPIQVKPADSESRGEDRKLFVGMLNKQQTEEDVYRLFEPYGVIEECTV 255

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM---------EGSSVPLVVKWADTEK 184
             LRG    SKGCAF+K+ T  +A +A+ A++G   M         +G+S  LVVK+ADT+K
Sbjct:   256 LRGPDGNSKGCAFVKFSTHAEAQSAISALHGSQTMPTGSDSLLPQGASSSLVVKFADTDK 315

Query:   185 E 185
             E
Sbjct:   316 E 316

 Score = 256 (95.2 bits), Expect = 2.1e-58, Sum P(2) = 2.1e-58
 Identities = 50/91 (54%), Positives = 60/91 (65%)

Query:   344 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASA 403
             EGP G NLFIYH+PQEFGD EL   F  FG V+S+KVF+D+AT  SKCFGFVS+++PASA
Sbjct:   507 EGPEGCNLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASA 566

Query:   404 QNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             Q AI  MNG             R    ++PY
Sbjct:   567 QAAIQAMNGFQIGMKRLKVQLKRPKDASRPY 597

 Score = 146 (56.5 bits), Expect = 6.5e-31, Sum P(2) = 6.5e-31
 Identities = 36/123 (29%), Positives = 61/123 (49%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  TE  +  +F+ + +++E  +++     +  C FV   +  EA  A++A 
Sbjct:   225 KLFVGMLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHAEAQSAISAL 284

Query:    76 HNKKTLP---------GASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFSI 124
             H  +T+P         GASS L VK+AD + ER   ++   +G     +    ++  FS 
Sbjct:   285 HGSQTMPTGSDSLLPQGASSSLVVKFADTDKERTIRRMQQMVGQF--GIFNPAIALPFST 342

Query:   125 YGT 127
             Y T
Sbjct:   343 YST 345


>MGI|MGI:1923433 [details] [associations]
            symbol:Celf6 "CUGBP, Elav-like family member 6"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
            HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
            GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
            CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
            IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
            ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
            PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
            GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
            NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
            Uniprot:Q7TN33
        Length = 460

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 151/427 (35%), Positives = 209/427 (48%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLFVGQ+P+ + E  L  +F+EF  + E+ ++KD+ T   + C F+   +R  A KA +
Sbjct:    46 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 105

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H +KTLPG + P+QVK A  E    + KLF+GML K   E +V  LF  +G I++  +
Sbjct:   106 ALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTV 165

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 193
             LR    TSKGCAF+K+ ++ +A AA++ ++G   M G+S  LVVK ADT++E        
Sbjct:   166 LRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVKLADTDRERALRRMQQ 225

Query:   194 XXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGI 253
                           HP+    LP+G    Y     Q   +  L   + P +         
Sbjct:   226 MAGQLGAF------HPA---PLPLGACGAYTTAILQHQAAL-LAAAQGPGLGQVAAVAAQ 275

Query:   254 IPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYP-AVPGLQYPMPYPGGMLGHRP 312
             +  V   + +       ++N  P      P    G   P  V G     P   G  G   
Sbjct:   276 MQHVAAFSLVAAPLLPAAANTSPGGNG--PGALPGLPAPMGVNGFGSLTPQSNGQPGSDT 333

Query:   313 LNNS-----PGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGN 367
             L N+     P +   A A ++             Q EGP G NLFIYH+PQEFGD EL  
Sbjct:   334 LYNNGVSPYPAAYPSAYAPASTAFSQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQ 393

Query:   368 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRD 427
              F  FG V+SAKVFVD+AT  SKCFGFVS+++P SAQ AI  MNG             R 
Sbjct:   394 TFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRP 453

Query:   428 NKQNKPY 434
                N+PY
Sbjct:   454 KDANRPY 460


>RGD|1310451 [details] [associations]
            symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
            OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
            UCSC:RGD:1310451 Uniprot:D4ABS9
        Length = 460

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 162/435 (37%), Positives = 217/435 (49%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLFVGQ+P+ + E  L  +F+EF  + E+ ++KD+ T   + C F+   +R  A KA +
Sbjct:    46 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 105

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H +KTLPG + P+QVK A  E    + KLF+GML K   E +V  LF  +G I++  +
Sbjct:   106 ALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTV 165

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 193
             LR    TSKGCAF+K+ ++ +A AA++ ++G   M G+S  LVVK ADT++E        
Sbjct:   166 LRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVKLADTDRERALRRMQQ 225

Query:   194 XXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQ-------ASGSYGLMQYRL--PPM 244
                           HP+    LP+G    Y     Q       A+   GL Q       M
Sbjct:   226 MAGQLGAF------HPA---PLPLGACGAYTTAILQHQAALLAAAQGPGLGQVAAVAAQM 276

Query:   245 QNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNY-AMP-PSGFVGSGY--PAVPGLQYP 300
             Q+   F  +  P+    A    SP  S N GP     +P P G  G G   P   G    
Sbjct:   277 QHVAAFSLVAAPLLPAAA--NTSP--SGN-GPGALPGLPAPMGVNGFGSLNPQTNG---- 327

Query:   301 MPYPGG-MLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQE 359
                PG   L +  L+  P +   A A  +             Q EGP G NLFIYH+PQE
Sbjct:   328 --QPGSDSLYNNGLSPYPAAYPSAYAPVSTAFPQQPSALPQQQREGPEGCNLFIYHLPQE 385

Query:   360 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXX 419
             FGD EL   F  FG V+SAKVFVD+AT  SKCFGFVS+++P SAQ AI  MNG       
Sbjct:   386 FGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKR 445

Query:   420 XXXXXXRDNKQNKPY 434
                   R    N+PY
Sbjct:   446 LKVQLKRPKDANRPY 460


>UNIPROTKB|E2RJG5 [details] [associations]
            symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
            EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
        Length = 427

 Score = 312 (114.9 bits), Expect = 4.8e-56, Sum P(2) = 4.8e-56
 Identities = 63/155 (40%), Positives = 98/155 (63%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLFVGQ+P+ + E  L  +F+EF  + E+ ++KD+ T   + C F+   +R  A KA +
Sbjct:     7 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 66

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H +KTLPG + P+QVK A  E    + KLF+GML K   E +V  LF  +G I++  +
Sbjct:    67 ALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTV 126

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 168
             LR    TSKGCAF+K+ ++ +A AA+++++G   M
Sbjct:   127 LRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTM 161

 Score = 283 (104.7 bits), Expect = 4.8e-56, Sum P(2) = 4.8e-56
 Identities = 77/198 (38%), Positives = 98/198 (49%)

Query:   240 RLPPMQNQPGFH-GIIPPVNQGNAMRGASPDLSSNMG-PRNYAMPPSGFVGSGYPAV-PG 296
             R P   +QPG   G +P +     + G  P      G P +  +  +G   S YPA  PG
Sbjct:   238 RPPAATSQPGGGPGSLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGL--SPYPAQSPG 295

Query:   297 LQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHI 356
             +  P+      + H      P + +P V+ + P            Q EGP G NLFIYH+
Sbjct:   296 VADPLQQAYAGMHHYAAY--PSAYAP-VSTAFPQQSSALPQQ---QREGPEGCNLFIYHL 349

Query:   357 PQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXX 416
             PQEFGD EL   F  FG V+SAKVFVD+AT  SKCFGFVS+++P SAQ AI  MNG    
Sbjct:   350 PQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIG 409

Query:   417 XXXXXXXXXRDNKQNKPY 434
                      R    N+PY
Sbjct:   410 MKRLKVQLKRPKDANRPY 427

 Score = 134 (52.2 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
 Identities = 29/82 (35%), Positives = 48/82 (58%)

Query:   103 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEA 161
             KLF+G +P+ + E ++  LF  +G I +L +L+       KGCAFL Y  ++ AL A  A
Sbjct:     8 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 67

Query:   162 INGKHKMEGSSVPLVVKWADTE 183
             ++ +  + G + P+ VK A +E
Sbjct:    68 LHEQKTLPGMNRPIQVKPAASE 89

 Score = 77 (32.2 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             LF+  + ++ G++++   FQ FG +    V +    G SK   FV + S   AQ AI  +
Sbjct:    97 LFVGMLGKQQGEEDVRRLFQPFGHIEECTV-LRSPDGTSKGCAFVKFGSQGEAQAAIQSL 155

Query:   411 NG 412
             +G
Sbjct:   156 HG 157

 Score = 56 (24.8 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
 Identities = 31/89 (34%), Positives = 41/89 (46%)

Query:   245 QNQPGFHGIIPPVNQGNAMRGASPDLSS---NMGPRNYAMPPSGFVGSGYPAVPGLQYPM 301
             Q + G  G+ P  +   A+ GA+  L     N+GP       SG V +  PA+P  + P 
Sbjct:   170 QGEAG--GVGPGFSSPRAI-GAAQGLMGTALNLGPGL----GSGLVTAASPALP--RAPR 220

Query:   302 PYPG-GMLGHRPLNNSPGSVSPAVANSNP 329
             P  G G  G RP  +SP    PA A S P
Sbjct:   221 PGAGRGGAGPRP--DSPTPRPPA-ATSQP 246


>UNIPROTKB|F1SHM1 [details] [associations]
            symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
            EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
        Length = 482

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 157/446 (35%), Positives = 220/446 (49%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLFVGQ+P+ + E  L  +F+EF  + E+ ++KD+ T   + C F+   +R  A KA +
Sbjct:    46 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 105

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H +KTLPG + P+QVK A  E    + KLF+GML K   E +V  LF  +G I++  +
Sbjct:   106 ALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTV 165

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 193
             LR    TSKGCAF+K+ ++ +A AA+++++G   M G+S  LVVK ADT++E        
Sbjct:   166 LRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVKLADTDRERALRRMQQ 225

Query:   194 XXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQ--------ASG-SYGLMQYRLPPM 244
                           HP+    LP+G    Y     Q        A G   G +      M
Sbjct:   226 MAGQLGAF------HPA---PLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQM 276

Query:   245 QNQPGFH----GIIPPVNQGNAMRGASPD----LSSNMGPRNYA-MPP--SGFVGSGYPA 293
             Q+   F      ++P     N+  G  P     L + +G   +  + P  +G  GS    
Sbjct:   277 QHVAAFSLVAAPLLPAAAAANSPPGGGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDSLY 336

Query:   294 VPGLQ-YPMPYPGG----MLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPG 348
               GL  YP   PG        +  +++   +   A A  +             Q EGP G
Sbjct:   337 NNGLSPYPAQSPGVADPLQQAYAGMHHYAAAYPSAYAPVSTTFSQQPSALPQQQREGPEG 396

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
              NLFIYH+PQEFGD EL   F  FG V+SAKVFVD+AT  SKCFGFVS+++P SAQ AI 
Sbjct:   397 CNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQ 456

Query:   409 MMNGCXXXXXXXXXXXXRDNKQNKPY 434
              MNG             R    N+PY
Sbjct:   457 AMNGFQIGMKRLKVQLKRPKDANRPY 482


>WB|WBGene00001340 [details] [associations]
            symbol:etr-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
            "body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
            evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
            "locomotion" evidence=IMP] [GO:0040002 "collagen and
            cuticulin-based cuticle development" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
            evidence=IMP] [GO:0061199 "striated muscle contraction involved in
            embryonic body morphogenesis" evidence=IMP] [GO:0008340
            "determination of adult lifespan" evidence=IMP] [GO:0005634
            "nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
            GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
            GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
            HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
            UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
            UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
            ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
            EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
            EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
            EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
            WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
            Uniprot:A8DYS0
        Length = 588

 Score = 344 (126.2 bits), Expect = 7.0e-56, Sum P(2) = 7.0e-56
 Identities = 86/261 (32%), Positives = 134/261 (51%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +K+FVGQ+P+   E     +F+++  V   NI++DK+T+AS+ CCFV    R++A +A  
Sbjct:    55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQG 114

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A HN K + G   P+Q+K AD E  R E KLFIG L K  +E  +  +F+ +G I+D  +
Sbjct:   115 ALHNIKVIEGMHHPVQMKPADTE-NRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 193
             LR     S+GCAF+ +  +  A+ A + ++    MEG S PLVVK+ADT+K+        
Sbjct:   174 LRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKFADTQKDKDVKTKSM 233

Query:   194 XXXXXNNLPNADSQHPSLFGAL-PMGYAPPYNGYGYQASGSY-GLMQYRLPPMQNQPGFH 251
                     P   +   SL   L P        G  YQA  S   L+  +    Q      
Sbjct:   234 ITGSGAGSPKGGAA--SLLQNLNPALLQQLGGGQNYQAVASLLSLINGQQGQQQQHQQQQ 291

Query:   252 GIIPPVNQGNAMRGASPDLSS 272
              ++  +  GN + G +P +++
Sbjct:   292 NVLGILGTGNPLLG-NPAMAA 311

 Score = 260 (96.6 bits), Expect = 7.0e-56, Sum P(2) = 7.0e-56
 Identities = 47/70 (67%), Positives = 57/70 (81%)

Query:   343 IEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPAS 402
             ++GP GANLFIYH+PQ+FGD +L N F  FG +LSAKVF+DK T +SKCFGFVSYE+  S
Sbjct:   497 VKGPDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQS 556

Query:   403 AQNAIAMMNG 412
             A NAI+ MNG
Sbjct:   557 ATNAISAMNG 566

 Score = 149 (57.5 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
 Identities = 39/125 (31%), Positives = 64/125 (51%)

Query:    60 VICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVS 119
             V+ P  +     +NA   K T P  ++   V  +  E +    K+F+G +P+  +E +  
Sbjct:    18 VVVPIAEST--VINA---KDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQWNETDCR 72

Query:   120 ALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 178
              LF  YG++    ILR  S Q SKGC F+ +  ++ A+ A  A++    +EG   P+ +K
Sbjct:    73 RLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMK 132

Query:   179 WADTE 183
              ADTE
Sbjct:   133 PADTE 137

 Score = 54 (24.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             LFI  + ++  ++ L   F  FG +    V  D+  G S+   FV++ + + A  A   M
Sbjct:   144 LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQ-DGKSRGCAFVTFTNRSCAVVATKEM 202

Query:   411 N 411
             +
Sbjct:   203 H 203


>UNIPROTKB|E1B8K2 [details] [associations]
            symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
            EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
            Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
        Length = 482

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 157/446 (35%), Positives = 220/446 (49%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLFVGQ+P+ + E  L  +F+EF  + E+ ++KD+ T   + C F+   +R  A KA +
Sbjct:    46 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 105

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H +KTLPG + P+QVK A  E    + KLF+GML K   E +V  LF  +G I++  +
Sbjct:   106 ALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTV 165

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 193
             LR    TSKGCAF+K+ ++ +A AA+++++G   M G+S  LVVK ADT++E        
Sbjct:   166 LRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVKLADTDRERALRRMQQ 225

Query:   194 XXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQ--------ASG-SYGLMQYRLPPM 244
                           HP+    LP+G    Y     Q        A G   G +      M
Sbjct:   226 MAGQLGAF------HPA---PLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQM 276

Query:   245 QNQPGFH----GIIPPVNQGNAMRGASPD----LSSNMGPRNYA-MPP--SGFVGSGYPA 293
             Q+   F      ++P     N+  G  P     L + +G   +  + P  +G  GS    
Sbjct:   277 QHVAAFSLVAAPLLPAAAAANSPPGGGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDSLY 336

Query:   294 VPGLQ-YPMPYPGG----MLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPG 348
               GL  YP   PG        +  +++   +   A A  +             Q EGP G
Sbjct:   337 NNGLSPYPAQSPGVADPLQQAYAGMHHYAAAYPSAYAPVSTTFPQQPSALPQQQREGPEG 396

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
              NLFIYH+PQEFGD EL   F  FG V+SAKVFVD+AT  SKCFGFVS+++P SAQ AI 
Sbjct:   397 CNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQ 456

Query:   409 MMNGCXXXXXXXXXXXXRDNKQNKPY 434
              MNG             R    N+PY
Sbjct:   457 AMNGFQIGMKRLKVQLKRPKDANRPY 482


>UNIPROTKB|Q96J87 [details] [associations]
            symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=NAS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
            evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646
            KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 GO:GO:0000381
            OrthoDB:EOG4RJG30 EMBL:AF401233 EMBL:AF425606 EMBL:AK131098
            EMBL:AK294382 EMBL:AK296004 EMBL:AC009690 EMBL:BC030835
            EMBL:BC033838 IPI:IPI00171103 IPI:IPI00793692 IPI:IPI00909307
            IPI:IPI00922660 RefSeq:NP_001166155.1 RefSeq:NP_001166156.1
            RefSeq:NP_443072.3 UniGene:Hs.348342 PDB:2DGQ PDBsum:2DGQ
            ProteinModelPortal:Q96J87 SMR:Q96J87 STRING:Q96J87
            PhosphoSite:Q96J87 DMDM:74760888 PRIDE:Q96J87
            Ensembl:ENST00000287202 Ensembl:ENST00000395258
            Ensembl:ENST00000543764 Ensembl:ENST00000567083
            Ensembl:ENST00000569547 GeneID:60677 KEGG:hsa:60677 UCSC:uc002auh.2
            UCSC:uc002auj.2 CTD:60677 GeneCards:GC15M072577 H-InvDB:HIX0012406
            HGNC:HGNC:14059 MIM:612681 neXtProt:NX_Q96J87 PharmGKB:PA25430
            InParanoid:Q96J87 OMA:MQHVAAF PhylomeDB:Q96J87
            EvolutionaryTrace:Q96J87 GenomeRNAi:60677 NextBio:65492
            ArrayExpress:Q96J87 Bgee:Q96J87 CleanEx:HS_BRUNOL6
            Genevestigator:Q96J87 Uniprot:Q96J87
        Length = 481

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 157/445 (35%), Positives = 219/445 (49%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLFVGQ+P+ + E  L  +F+EF  + E+ ++KD+ T   + C F+   +R  A KA +
Sbjct:    46 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 105

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H +KTLPG + P+QVK A  E    + KLF+GML K   E +V  LF  +G I++  +
Sbjct:   106 ALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTV 165

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 193
             LR    TSKGCAF+K+ ++ +A AA+  ++G   M G+S  LVVK ADT++E        
Sbjct:   166 LRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVKLADTDRERALRRMQQ 225

Query:   194 XXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQ--------ASG-SYGLMQYRLPPM 244
                      +  + HP+    LP+G    Y     Q        A G   G +      M
Sbjct:   226 MAG------HLGAFHPA---PLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQM 276

Query:   245 QNQPGFHGIIPPVNQGNAMR-------GASPDLSSNMGPRNYA-MPP--SGFVGSGYPAV 294
             Q+   F  +  P+    A         G  P L + +G   +  + P  +G  GS     
Sbjct:   277 QHVAAFSLVAAPLLPAAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYN 336

Query:   295 PGLQ-YPMPYPGG----MLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGA 349
              GL  YP   PG        +  +++   +   A A  +             Q EGP G 
Sbjct:   337 NGLSPYPAQSPGVADPLQQAYAGMHHYAAAYPSAYAPVSTAFPQQPSALPQQQREGPEGC 396

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NLFIYH+PQEFGD EL   F  FG V+SAKVFVD+AT  SKCFGFVS+++P SAQ AI  
Sbjct:   397 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQA 456

Query:   410 MNGCXXXXXXXXXXXXRDNKQNKPY 434
             MNG             R    N+PY
Sbjct:   457 MNGFQIGMKRLKVQLKRPKDANRPY 481


>ZFIN|ZDB-GENE-110408-50 [details] [associations]
            symbol:celf3b "cugbp, Elav-like family member 3b"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
            EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
            EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
            Ensembl:ENSDART00000024206 Uniprot:E7F293
        Length = 442

 Score = 339 (124.4 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 69/173 (39%), Positives = 110/173 (63%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLF+GQ+P+++ E  L  +F+++  + E+ +IKDK T   + C F+   +R+ A KA +
Sbjct:     7 IKLFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQS 66

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H      G + P+QVK AD E    + KLF+GML K  S+ +V  +F  +G I +  +
Sbjct:    67 ALHYSSGYSGMNRPIQVKPADSEGRGEDRKLFVGMLGKQQSDEDVRKIFEPFGGIDECTV 126

Query:   134 LRGSQQTSK-GCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             LRG   TSK GCAF+K+++  +A +A+ +++G   + G+S  LVVK+ADTEKE
Sbjct:   127 LRGPDGTSKAGCAFVKFQSHSEAQSAINSLHGSRTLPGASSSLVVKFADTEKE 179

 Score = 251 (93.4 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 49/90 (54%), Positives = 58/90 (64%)

Query:   345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQ 404
             GP G N+FIYH+PQEF D E+   F  FG V+SAKVFVD+AT  SKCFGFVS+++PASAQ
Sbjct:   353 GPEGCNVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQ 412

Query:   405 NAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
              AI  MNG             R    N+PY
Sbjct:   413 TAIQAMNGFQIGMKRLKVQLKRPKDANRPY 442

 Score = 171 (65.3 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
 Identities = 37/86 (43%), Positives = 53/86 (61%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIK--DKTTRASRCCFVICPSRQEADKAVN 73
             KLFVG + K  ++  +  +F+ F  +DE  +++  D T++A  C FV   S  EA  A+N
Sbjct:    96 KLFVGMLGKQQSDEDVRKIFEPFGGIDECTVLRGPDGTSKAG-CAFVKFQSHSEAQSAIN 154

Query:    74 ACHNKKTLPGASSPLQVKYADGELER 99
             + H  +TLPGASS L VK+AD E ER
Sbjct:   155 SLHGSRTLPGASSSLVVKFADTEKER 180

 Score = 71 (30.1 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
 Identities = 17/63 (26%), Positives = 35/63 (55%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 161
             +FI  LP+  +++E+  +F  +G +   ++   R + Q SK   F+ ++    A  A++A
Sbjct:   359 VFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQ-SKCFGFVSFDNPASAQTAIQA 417

Query:   162 ING 164
             +NG
Sbjct:   418 MNG 420


>WB|WBGene00006807 [details] [associations]
            symbol:unc-75 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016607
            "nuclear speck" evidence=IDA] [GO:0032224 "positive regulation of
            synaptic transmission, cholinergic" evidence=IMP] [GO:0032230
            "positive regulation of synaptic transmission, GABAergic"
            evidence=IMP] [GO:0016071 "mRNA metabolic process" evidence=ISS]
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0007271 "synaptic
            transmission, cholinergic" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0016071 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0032230 GO:GO:0007271 HSSP:P19339
            KO:K13207 GeneTree:ENSGT00560000076837 GO:GO:0032224 EMBL:Z81473
            EMBL:AY342388 PIR:T19347 RefSeq:NP_492958.3 UniGene:Cel.20354
            ProteinModelPortal:G5EE68 SMR:G5EE68 IntAct:G5EE68
            EnsemblMetazoa:C17D12.2 GeneID:182722 KEGG:cel:CELE_C17D12.2
            CTD:182722 WormBase:C17D12.2 OMA:SHAQTEN NextBio:918598
            Uniprot:G5EE68
        Length = 514

 Score = 344 (126.2 bits), Expect = 2.5e-55, Sum P(2) = 2.5e-55
 Identities = 76/179 (42%), Positives = 112/179 (62%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLFVGQ+P+++ E  L  +F++F  + E  I+KDK T   + C F+    R  A +   
Sbjct:    29 IKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQA 88

Query:    74 ACHNKKTLPGASSPLQVKYADGEL------ERLEHK-LFIGMLPKNVSEAEVSALFSIYG 126
               H++KTLPG +  +QVK AD +       ++++ K LFIGML K  SE EV ALF+ +G
Sbjct:    89 TLHDQKTLPGMNRAMQVKPADTDSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFG 148

Query:   127 TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
              + ++ +LRG+   SKGCAF+KY+    A  A+ A++G   M G+S  LVVK+ADTEKE
Sbjct:   149 ELDEVTVLRGADGASKGCAFVKYKHGLDAHMAISALHGSQTMPGASSSLVVKYADTEKE 207

 Score = 247 (92.0 bits), Expect = 2.5e-55, Sum P(2) = 2.5e-55
 Identities = 48/93 (51%), Positives = 60/93 (64%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             ++ GP G NLFIYH+PQEFGD EL   F  FG ++SAKVFVD+AT  SKCFGFVSY++  
Sbjct:   422 EVLGPDGCNLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIH 481

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             S+Q AI  MNG             R   +++PY
Sbjct:   482 SSQAAITAMNGFQIGMKRLKVQLKRPRNESRPY 514

 Score = 174 (66.3 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
 Identities = 45/138 (32%), Positives = 70/138 (50%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G + K  +E ++ A+F  F  +DEV +++     +  C FV      +A  A++A 
Sbjct:   125 KLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADGASKGCAFVKYKHGLDAHMAISAL 184

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKLF-----IGML-PKNVSEAEVSALFSIYGTIK 129
             H  +T+PGASS L VKYAD E ER   ++      +GML P  V++  V   ++ Y  + 
Sbjct:   185 HGSQTMPGASSSLVVKYADTEKERQNRRMQQMAAQMGMLNPMLVNQ--VGMQYNAYQQVL 242

Query:   130 DLQILRGSQQTSKGCAFL 147
               Q L          A+L
Sbjct:   243 QQQSLAAQTNAMASAAYL 260


>UNIPROTKB|B4DHA8 [details] [associations]
            symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
            IPI:IPI00853277 UniGene:Hs.435976 UniGene:Hs.600908 HGNC:HGNC:14015
            EMBL:AC015961 EMBL:AC090386 EMBL:AC093332 EMBL:AC129908
            EMBL:AK295009 ProteinModelPortal:B4DHA8 STRING:B4DHA8
            Ensembl:ENST00000588597 UCSC:uc002lai.2 Bgee:B4DHA8 Uniprot:B4DHA8
        Length = 454

 Score = 390 (142.3 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
 Identities = 79/172 (45%), Positives = 114/172 (66%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLF+GQ+P+++ E  L  +F+EF  + E+ ++KD+ T   + C F+    R+ A KA +
Sbjct:    54 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 113

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H +KTLPG + P+QVK AD E  R + KLF+GML K  SE +V  LF  +G I++  I
Sbjct:   114 ALHEQKTLPGMNRPIQVKPADSE-SRGDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTI 172

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             LRG    SKGCAF+KY +  +A AA+ A++G   M G+S  LVVK+ADT+KE
Sbjct:   173 LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 224

 Score = 191 (72.3 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
 Identities = 36/52 (69%), Positives = 40/52 (76%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFG 393
             Q EGP G NLFIYH+PQEFGD EL   F  FG V+S+KVFVD+AT  SKCFG
Sbjct:   402 QREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFG 453

 Score = 166 (63.5 bits), Expect = 2.2e-25, Sum P(2) = 2.2e-25
 Identities = 34/89 (38%), Positives = 51/89 (57%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  +E  +  +F+ F  ++E  I++     +  C FV   S  EA  A+NA 
Sbjct:   142 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 201

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             H  +T+PGASS L VK+AD + ER   ++
Sbjct:   202 HGSQTMPGASSSLVVKFADTDKERTMRRM 230

 Score = 45 (20.9 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTI 128
             LFI  LP+   +AE+  +F  +G +
Sbjct:   411 LFIYHLPQEFGDAELMQMFLPFGNV 435


>MGI|MGI:1932407 [details] [associations]
            symbol:Celf4 "CUGBP, Elav-like family member 4"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
            "mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
            selection" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
            "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISO] [GO:0090394 "negative regulation of excitatory
            postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
            HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
            GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
            GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
            EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
            EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
            EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
            IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
            IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
            RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
            RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
            SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
            PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
            GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
            UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
            OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
            Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
        Length = 486

 Score = 367 (134.2 bits), Expect = 6.6e-52, Sum P(3) = 6.6e-52
 Identities = 79/182 (43%), Positives = 115/182 (63%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLF+GQ+P+++ E  L  +F+EF  + E+ ++KD+ T   + C F+    R+ A KA +
Sbjct:    54 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 113

Query:    74 ACHNKKTLPGASSPLQVKYADGE-------LER---LEHKLFIGMLPKNVSEAEVSALFS 123
             A H +KTLPG + P+QVK AD E       L +    + KLF+GML K  SE +V  LF 
Sbjct:   114 ALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFE 173

Query:   124 IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 183
              +G I++  ILRG    SKGCAF+KY +  +A AA+ A++G   M G+S  LVVK+ADT+
Sbjct:   174 AFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTD 233

Query:   184 KE 185
             KE
Sbjct:   234 KE 235

 Score = 166 (63.5 bits), Expect = 6.4e-22, Sum P(3) = 6.4e-22
 Identities = 34/89 (38%), Positives = 51/89 (57%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  +E  +  +F+ F  ++E  I++     +  C FV   S  EA  A+NA 
Sbjct:   153 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 212

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             H  +T+PGASS L VK+AD + ER   ++
Sbjct:   213 HGSQTMPGASSSLVVKFADTDKERTMRRM 241

 Score = 111 (44.1 bits), Expect = 6.6e-52, Sum P(3) = 6.6e-52
 Identities = 22/34 (64%), Positives = 23/34 (67%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRV 375
             Q EGP G NL IYH+PQEFGD EL   F  FG V
Sbjct:   414 QREGPEGCNLLIYHLPQEFGDAELMQMFLPFGFV 447

 Score = 89 (36.4 bits), Expect = 6.6e-52, Sum P(3) = 6.6e-52
 Identities = 19/43 (44%), Positives = 23/43 (53%)

Query:   392 FGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             FGFVS+++PASAQ AI  MNG             R    N+PY
Sbjct:   444 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 486

 Score = 37 (18.1 bits), Expect = 2.4e-14, Sum P(3) = 2.4e-14
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTI 128
             L I  LP+   +AE+  +F  +G +
Sbjct:   423 LLIYHLPQEFGDAELMQMFLPFGFV 447

 Score = 37 (18.1 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query:   146 FLKYETKEQALAALEAING 164
             F+ ++    A  A++A+NG
Sbjct:   446 FVSFDNPASAQTAIQAMNG 464


>DICTYBASE|DDB_G0270634 [details] [associations]
            symbol:DDB_G0270634 "putative splicing regulator"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
            EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
            InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
            Uniprot:Q55D63
        Length = 368

 Score = 365 (133.5 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
 Identities = 72/171 (42%), Positives = 111/171 (64%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             +FVG +P  M E  +  +F +F  + ++ IIKDK T  S+ C F+   +++EAD A+N  
Sbjct:    20 VFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNTT 79

Query:    76 HNKKT-LPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
             +   T L   + PLQVKY+D E+E++E KLFIGML  +  E ++  LF  YG I+DL I+
Sbjct:    80 NESGTFLENMNKPLQVKYSDNEIEKMERKLFIGMLGTS-DEDQIRILFGNYGIIEDLNIV 138

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             R      KG  F+KY T++++  AL  I+GKH + GS++P++VK+ADTE++
Sbjct:   139 REKDGKPKGYGFIKYSTRDESENALREIDGKHTLPGSNLPIIVKFADTERQ 189

 Score = 186 (70.5 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
 Identities = 46/122 (37%), Positives = 63/122 (51%)

Query:   292 PAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN- 350
             P   G    M    G  G+R     P +V+  +   N             Q + P  +N 
Sbjct:   230 PFFYGQNSQMSQAMGNNGYRGYQQQP-NVNFGMMQGNQAFDYNQQQQQQQQQQQPNESND 288

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             LFIY++P  +GD+EL   F  +G V+S+KVF+DK T  SKCFGFVSY++  SA  AI  +
Sbjct:   289 LFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAIQEL 348

Query:   411 NG 412
             NG
Sbjct:   349 NG 350

 Score = 131 (51.2 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
 Identities = 28/92 (30%), Positives = 53/92 (57%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G +     E Q+  +F  + +++++NI+++K  +     F+   +R E++ A+   
Sbjct:   108 KLFIGMLGTS-DEDQIRILFGNYGIIEDLNIVREKDGKPKGYGFIKYSTRDESENALREI 166

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKLFIG 107
               K TLPG++ P+ VK+AD   ER + K  +G
Sbjct:   167 DGKHTLPGSNLPIIVKFAD--TERQKRKKLLG 196

 Score = 97 (39.2 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
 Identities = 24/77 (31%), Positives = 43/77 (55%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 161
             LFI  LP    + E+  LF+ YG +   ++   + +QQ SK   F+ Y+  + A+AA++ 
Sbjct:   289 LFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQ-SKCFGFVSYDNTQSAIAAIQE 347

Query:   162 INGKHKMEGSSVPLVVK 178
             +NG+  +EG  + +  K
Sbjct:   348 LNGR-AIEGKKLKVNFK 363

 Score = 47 (21.6 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
 Identities = 18/61 (29%), Positives = 25/61 (40%)

Query:   221 PPYNGYG-YQASGSYGLMQYRLPPMQNQ--PGFHGIIPPVNQG---NAMRGASPDLSSNM 274
             PP N +  YQ +      Q +    QNQ  P F+G    ++Q    N  RG     + N 
Sbjct:   200 PPQNPFNFYQQNQQQQQQQQQQQQQQNQYQPFFYGQNSQMSQAMGNNGYRGYQQQPNVNF 259

Query:   275 G 275
             G
Sbjct:   260 G 260

 Score = 41 (19.5 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query:   223 YNGYGYQASGSYGLMQ 238
             Y GY  Q + ++G+MQ
Sbjct:   248 YRGYQQQPNVNFGMMQ 263


>UNIPROTKB|F1S8E8 [details] [associations]
            symbol:CELF5 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 OMA:DGMKDLD EMBL:FP016150
            EMBL:FP565386 Ensembl:ENSSSCT00000014721 Uniprot:F1S8E8
        Length = 420

 Score = 287 (106.1 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
 Identities = 61/130 (46%), Positives = 83/130 (63%)

Query:    57 CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEA 116
             C F+   +R  A KA  A H +KTLPG + P+QVK AD E    + KLF+GML K  SE 
Sbjct:    23 CAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGDRKLFVGMLNKQQSEE 82

Query:   117 EVSALFSIYGTIKDLQILRGSQQTSK-GCAFLKYETKEQALAALEAINGKHKMEGSSVPL 175
             +V  LF  +G I +  +LRG   +SK GCAF+K+ +  +A AA+ A++G   M G+S  L
Sbjct:    83 DVLRLFQPFGVIDECTVLRGPDGSSKAGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 142

Query:   176 VVKWADTEKE 185
             VVK+ADT+KE
Sbjct:   143 VVKFADTDKE 152

 Score = 262 (97.3 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
 Identities = 71/195 (36%), Positives = 98/195 (50%)

Query:   242 PPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAV-PGLQYP 300
             PP+       G++ P+  G A  G  P    +  P    +  +G V   YPA  P +   
Sbjct:   237 PPLLGTAAVPGLVAPITNGFA--GVVPFPGGH--PALETVYANGLVP--YPAQSPTVAET 290

Query:   301 M-PYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQE 359
             + P   G+  +  +  +  +++P +A+S P            Q EGP G NLFIYH+PQE
Sbjct:   291 LHPAFSGVQQYTAMYPT-AAITP-IAHSVPQPPPLLQQQ---QREGPEGCNLFIYHLPQE 345

Query:   360 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXX 419
             FGD EL   F  FG ++S+KVF+D+AT  SKCFGFVS+++PASAQ AI  MNG       
Sbjct:   346 FGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKR 405

Query:   420 XXXXXXRDNKQNKPY 434
                   R      PY
Sbjct:   406 LKVQLKRPKDPGHPY 420

 Score = 175 (66.7 bits), Expect = 6.0e-36, Sum P(2) = 6.0e-36
 Identities = 45/129 (34%), Positives = 70/129 (54%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIK--DKTTRASRCCFVICPSRQEADKAVN 73
             KLFVG + K  +E  +L +F+ F ++DE  +++  D +++A  C FV   S  EA  A++
Sbjct:    69 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKAG-CAFVKFSSHTEAQAAIH 127

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFSIYGTIKDL 131
             A H  +T+PGASS L VK+AD + ER   ++   +G L   +    ++  FS Y      
Sbjct:   128 ALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL--GILTPSLTLPFSPYSAYA-- 183

Query:   132 QILRGSQQT 140
             Q L   Q T
Sbjct:   184 QALMQQQTT 192

 Score = 86 (35.3 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query:   140 TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 183
             T KGCAFL Y  ++ A+ A  A++ +  + G + P+ VK AD+E
Sbjct:    19 THKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSE 62


>UNIPROTKB|F1NXF6 [details] [associations]
            symbol:BRUNOL6 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GeneTree:ENSGT00560000076837 GO:GO:0000381
            EMBL:AADN02051058 EMBL:AADN02051059 IPI:IPI00819127
            Ensembl:ENSGALT00000040113 OMA:PIHEINI Uniprot:F1NXF6
        Length = 476

 Score = 339 (124.4 bits), Expect = 2.7e-49, Sum P(3) = 2.7e-49
 Identities = 75/179 (41%), Positives = 111/179 (62%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLFVGQ+P+++ E+ L  +F+EF  + E+ ++KD+ T   + C F+   +R  A KA +
Sbjct:    48 IKLFVGQIPRNLEESDLKPLFEEFGRIYELTVLKDRFTGMHKGCAFLTYCARDSALKAQS 107

Query:    74 ACHNKKTLPGASSPLQVKY------ADGE-LERLEHKLFIGMLPKNVSEAEVSALFSIYG 126
             A H +KTLPG S   ++        AD   L   + KLF+GML K  SE +V  LF  +G
Sbjct:   108 ALHEQKTLPGVSDGRELGRGLGWPPADSSALPPEDRKLFVGMLGKQQSEDDVRRLFEPFG 167

Query:   127 TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
              I++  ILRG    SKGCAF+KY +  +A AA+ +++G   M G+S  LVVK+ADT+KE
Sbjct:   168 QIEECTILRGPDGASKGCAFVKYSSHAEAQAAISSLHGSQTMPGASSSLVVKFADTDKE 226

 Score = 157 (60.3 bits), Expect = 3.4e-21, Sum P(3) = 3.4e-21
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  +E  +  +F+ F  ++E  I++     +  C FV   S  EA  A+++ 
Sbjct:   144 KLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDGASKGCAFVKYSSHAEAQAAISSL 203

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             H  +T+PGASS L VK+AD + ER
Sbjct:   204 HGSQTMPGASSSLVVKFADTDKER 227

 Score = 120 (47.3 bits), Expect = 2.7e-49, Sum P(3) = 2.7e-49
 Identities = 45/147 (30%), Positives = 60/147 (40%)

Query:   235 GLMQYRLPPMQNQ---PGFHGI-IPPVNQGNAMRGASP-DLSSNMGPRNYAMPPSGFVGS 289
             GL+   L P       PG     +P +     + G SP    +N  P +  +  +G    
Sbjct:   296 GLVAAPLTPSSGTSTPPGISTAPVPSIATPIGVNGFSPLPPQTNGQPTSETIYTNGI--H 353

Query:   290 GYPAV-PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPG 348
              YPA  P +  P+      + H  +   P +   A A  +             Q EGP G
Sbjct:   354 PYPAQSPTVADPLQQAYAGMQHYAV---PAAYPTAYAPISQAFPQQAPIIPQQQREGPEG 410

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRV 375
              NLFIYH+PQEFGD EL   F  FG V
Sbjct:   411 CNLFIYHLPQEFGDAELTQMFLPFGFV 437

 Score = 83 (34.3 bits), Expect = 2.7e-49, Sum P(3) = 2.7e-49
 Identities = 18/43 (41%), Positives = 22/43 (51%)

Query:   392 FGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             FGFVS+++P SAQ AI  MNG             R    N+PY
Sbjct:   434 FGFVSFDNPTSAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 476

 Score = 45 (20.9 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTI 128
             LFI  LP+   +AE++ +F  +G +
Sbjct:   413 LFIYHLPQEFGDAELTQMFLPFGFV 437

 Score = 41 (19.5 bits), Expect = 4.7e-41, Sum P(3) = 4.7e-41
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query:   204 ADSQHPSLFGALPMGYAPPYNGYGYQA 230
             A  QH ++  A P  YAP    +  QA
Sbjct:   371 AGMQHYAVPAAYPTAYAPISQAFPQQA 397

 Score = 41 (19.5 bits), Expect = 2.9e-09, Sum P(3) = 2.9e-09
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query:   146 FLKYETKEQALAALEAING 164
             F+ ++    A AA++A+NG
Sbjct:   436 FVSFDNPTSAQAAIQAMNG 454


>FB|FBgn0264001 [details] [associations]
            symbol:bru-3 "bruno-3" species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0017148 "negative regulation of translation" evidence=ISA]
            [GO:0043234 "protein complex" evidence=IDA] [GO:0042803 "protein
            homodimerization activity" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0043234 GO:GO:0042803 EMBL:AE014296 GO:GO:0017148
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
            KO:K13207 GeneTree:ENSGT00560000076837 FlyBase:FBgn0264001
            UniGene:Dm.13624 GeneID:39527 KEGG:dme:Dmel_CG12478 CTD:39527
            GenomeRNAi:39527 NextBio:814113 EMBL:AY060398 RefSeq:NP_729923.1
            SMR:Q9VU91 IntAct:Q9VU91 MINT:MINT-899406 STRING:Q9VU91
            EnsemblMetazoa:FBtr0330343 UCSC:CG12478-RA InParanoid:Q9VU91
            OMA:HALNGEY Uniprot:Q9VU91
        Length = 422

 Score = 277 (102.6 bits), Expect = 6.0e-45, Sum P(2) = 6.0e-45
 Identities = 64/152 (42%), Positives = 81/152 (53%)

Query:   283 PSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQ 342
             P+G   +   A PGL  P P+PG +         P ++ P +A   P             
Sbjct:   275 PNGDAATLQHAFPGL--P-PFPG-VAFPAVYGQFPQALPPPLAAVAPTQREDFLMFPGCS 330

Query:   343 IEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPAS 402
             I GP G NLFIYH+PQEFGD EL   F  FG V+S+KVF+D+AT  SKCFGFVS+++PAS
Sbjct:   331 ISGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSKCFGFVSFDNPAS 390

Query:   403 AQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             AQ AI  MNG             R    ++PY
Sbjct:   391 AQAAIQAMNGFQIGMKRLKVQLKRPKDASRPY 422

 Score = 234 (87.4 bits), Expect = 6.0e-45, Sum P(2) = 6.0e-45
 Identities = 52/128 (40%), Positives = 79/128 (61%)

Query:    63 PSRQEADKAVNACHNKKTLPGA---SSPLQVKYADGEL--ERLEHKLFIGMLPKNVSEAE 117
             P  + A +   +CH+    P     +  LQ+K A+ E   E L+ KLF+GML K  +E +
Sbjct:    11 PKVEFAQQVTVSCHHPLIPPAIKLMNRALQLKPAENESRSEHLDRKLFVGMLSKQQTEDD 70

Query:   118 VSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 177
             V  +F  +GTI++  ILRG    SKGCAF+K+ ++++A +A+  ++G   M G+S  LVV
Sbjct:    71 VRQIFHPFGTIEECTILRGPDGASKGCAFVKFGSQQEAQSAITNLHGSQTMPGASSSLVV 130

Query:   178 KWADTEKE 185
             K+ADTEKE
Sbjct:   131 KYADTEKE 138

 Score = 181 (68.8 bits), Expect = 3.6e-11, P = 3.6e-11
 Identities = 72/268 (26%), Positives = 106/268 (39%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  TE  +  +F  F  ++E  I++     +  C FV   S+QEA  A+   
Sbjct:    56 KLFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPDGASKGCAFVKFGSQQEAQSAITNL 115

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ--- 132
             H  +T+PGASS L VKYAD E ER   ++       N+    V   FS YG     Q   
Sbjct:   116 HGSQTMPGASSSLVVKYADTEKERQIRRMQQMAGHMNLLNPFVFNQFSPYGAYAQQQQQA 175

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAAL--EAINGKHK---MEGSSVPLVVKWADT---EK 184
              L  +  T+ G A   Y     ALA      +NG  +   +   ++P     A+T   + 
Sbjct:   176 ALMAAAATAPGSA-AAYMNPMAALATQIPHGLNGTGQPPSLPSPTMPNFNMGANTPNGQP 234

Query:   185 EXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPM 244
                               N   Q  + F   P+    P  G     +G    +Q+  P +
Sbjct:   235 GGAAAAAAAAAAADGVFTNGIPQ--TAFPGHPLHLTIPPQGL---PNGDAATLQHAFPGL 289

Query:   245 QNQPGFHGIIPPVNQGNAMRGASPDLSS 272
                P F G+  P   G   +   P L++
Sbjct:   290 ---PPFPGVAFPAVYGQFPQALPPPLAA 314


>UNIPROTKB|F1MD42 [details] [associations]
            symbol:F1MD42 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 EMBL:DAAA02019657 EMBL:DAAA02019658
            EMBL:DAAA02019659 EMBL:DAAA02019660 EMBL:DAAA02019661
            IPI:IPI00713955 ProteinModelPortal:F1MD42
            Ensembl:ENSBTAT00000029023 OMA:PAQSPTM Uniprot:F1MD42
        Length = 489

 Score = 266 (98.7 bits), Expect = 7.4e-45, Sum P(2) = 7.4e-45
 Identities = 67/177 (37%), Positives = 102/177 (57%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVN 73
             +KLFVGQ+P+++ E  L  +F++F  + E+ ++KD  T   +   +     R   ++A  
Sbjct:    49 IKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGLRWWTHIRRDNPEEAPA 108

Query:    74 ACHNKKTLPGASSPLQVKYA----DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 129
             A   ++ L G   P  VK       GE +R   KLF+GML K  SE +V  LF  +G I 
Sbjct:   109 AAGGQREL-GLQRPGGVKLPPSSPSGEGDR---KLFVGMLNKQQSEEDVLRLFQPFGVID 164

Query:   130 DLQILRGSQQTSK-GCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +  +LRG   +SK GCAF+K+ +  +A AA+ A++G   M G+S  LVVK+ADT+KE
Sbjct:   165 ECTVLRGPDGSSKAGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 221

 Score = 260 (96.6 bits), Expect = 7.4e-45, Sum P(2) = 7.4e-45
 Identities = 71/195 (36%), Positives = 98/195 (50%)

Query:   242 PPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAV-PGLQYP 300
             PP+       G++ P+  G A  G  P    +  P    +  +G V   YPA  P +   
Sbjct:   306 PPLLGTATVPGLVAPITNGFA--GVVPFPGGH--PALETVYANGLVP--YPAQSPTVAET 359

Query:   301 M-PYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQE 359
             + P   G+  +  +  +  +++P +A+S P            Q EGP G NLFIYH+PQE
Sbjct:   360 LHPAFSGVQQYTAMYPT-AAITP-IAHSVPQPPPLLQQQ---QREGPEGCNLFIYHLPQE 414

Query:   360 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXX 419
             FGD EL   F  FG ++S+KVF+D+AT  SKCFGFVS+++PASAQ AI  MNG       
Sbjct:   415 FGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKR 474

Query:   420 XXXXXXRDNKQNKPY 434
                   R      PY
Sbjct:   475 LKVQLKRPKDPGHPY 489

 Score = 175 (66.7 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
 Identities = 45/129 (34%), Positives = 70/129 (54%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIK--DKTTRASRCCFVICPSRQEADKAVN 73
             KLFVG + K  +E  +L +F+ F ++DE  +++  D +++A  C FV   S  EA  A++
Sbjct:   138 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKAG-CAFVKFSSHTEAQAAIH 196

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFSIYGTIKDL 131
             A H  +T+PGASS L VK+AD + ER   ++   +G L   +    ++  FS Y      
Sbjct:   197 ALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL--GILTPSLTLPFSPYSAYA-- 252

Query:   132 QILRGSQQT 140
             Q L   Q T
Sbjct:   253 QALMQQQTT 261

 Score = 83 (34.3 bits), Expect = 2.2e-25, Sum P(2) = 2.2e-25
 Identities = 20/69 (28%), Positives = 37/69 (53%)

Query:    94 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR----GSQQTSKGCAFLKY 149
             DG  +    KLF+G +P+N+ E ++  LF  +G I +L +L+    G  +  +    ++ 
Sbjct:    41 DGTKDLDAIKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGLRWWTHIRR 100

Query:   150 ETKEQALAA 158
             +  E+A AA
Sbjct:   101 DNPEEAPAA 109


>UNIPROTKB|F1NYP4 [details] [associations]
            symbol:CELF4 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 OMA:EDSEKNG EMBL:AADN02067588
            EMBL:AADN02067589 EMBL:AADN02067590 EMBL:AADN02067591
            EMBL:AADN02067592 EMBL:AADN02067593 EMBL:AADN02067594
            EMBL:AADN02067595 EMBL:AADN02067596 IPI:IPI00590965
            Ensembl:ENSGALT00000003800 Uniprot:F1NYP4
        Length = 361

 Score = 266 (98.7 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
 Identities = 53/93 (56%), Positives = 61/93 (65%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP G NLFIYH+PQEFGD EL   F  FG V+S+KVFVD+AT  SKCFGFVS+++PA
Sbjct:   269 QREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPA 328

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    N+PY
Sbjct:   329 SAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 361

 Score = 215 (80.7 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
 Identities = 43/85 (50%), Positives = 58/85 (68%)

Query:   101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 160
             + KLF+GML K  SE +V  LF  +G I++  ILRG    SKGCAF+KY +  +A AA+ 
Sbjct:     8 DRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAIN 67

Query:   161 AINGKHKMEGSSVPLVVKWADTEKE 185
             A++G   M G+S  LVVK+ADT+KE
Sbjct:    68 ALHGSQTMPGASSSLVVKFADTDKE 92

 Score = 166 (63.5 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
 Identities = 34/89 (38%), Positives = 51/89 (57%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  +E  +  +F+ F  ++E  I++     +  C FV   S  EA  A+NA 
Sbjct:    10 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 69

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             H  +T+PGASS L VK+AD + ER   ++
Sbjct:    70 HGSQTMPGASSSLVVKFADTDKERTMRRM 98

 Score = 80 (33.2 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 161
             LFI  LP+   +AE+  +F  +G +   ++   R + Q SK   F+ ++    A AA++A
Sbjct:   278 LFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 336

Query:   162 ING 164
             +NG
Sbjct:   337 MNG 339


>UNIPROTKB|F1P5J4 [details] [associations]
            symbol:BRUNOL6 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 EMBL:AADN02051058 EMBL:AADN02051059
            IPI:IPI00591656 Ensembl:ENSGALT00000003051 Uniprot:F1P5J4
        Length = 354

 Score = 266 (98.7 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
 Identities = 53/93 (56%), Positives = 60/93 (64%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP G NLFIYH+PQEFGD EL   F  FG V+SAKVFVD+AT  SKCFGFVS+++P 
Sbjct:   262 QREGPEGCNLFIYHLPQEFGDAELTQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPT 321

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    N+PY
Sbjct:   322 SAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 354

 Score = 209 (78.6 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
 Identities = 42/85 (49%), Positives = 58/85 (68%)

Query:   101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 160
             + KLF+GML K  SE +V  LF  +G I++  ILRG    SKGCAF+KY +  +A AA+ 
Sbjct:     2 DRKLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDGASKGCAFVKYSSHAEAQAAIS 61

Query:   161 AINGKHKMEGSSVPLVVKWADTEKE 185
             +++G   M G+S  LVVK+ADT+KE
Sbjct:    62 SLHGSQTMPGASSSLVVKFADTDKE 86

 Score = 157 (60.3 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  +E  +  +F+ F  ++E  I++     +  C FV   S  EA  A+++ 
Sbjct:     4 KLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDGASKGCAFVKYSSHAEAQAAISSL 63

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             H  +T+PGASS L VK+AD + ER
Sbjct:    64 HGSQTMPGASSSLVVKFADTDKER 87

 Score = 83 (34.3 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 161
             LFI  LP+   +AE++ +F  +G +   ++   R + Q SK   F+ ++    A AA++A
Sbjct:   271 LFIYHLPQEFGDAELTQMFLPFGNVISAKVFVDRATNQ-SKCFGFVSFDNPTSAQAAIQA 329

Query:   162 ING 164
             +NG
Sbjct:   330 MNG 332


>RGD|1307630 [details] [associations]
            symbol:Celf4 "CUGBP, Elav-like family member 4" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1307630 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026 GO:GO:0006376
            GeneTree:ENSGT00560000076837 GO:GO:0000381 IPI:IPI00870309
            Ensembl:ENSRNOT00000061151 ArrayExpress:F1M6I9 Uniprot:F1M6I9
        Length = 355

 Score = 262 (97.3 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
 Identities = 52/93 (55%), Positives = 60/93 (64%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP G NL IYH+PQEFGD EL   F  FG V+S+KVFVD+AT  SKCFGFVS+++PA
Sbjct:   263 QREGPEGCNLLIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPA 322

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    N+PY
Sbjct:   323 SAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 355

 Score = 213 (80.0 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
 Identities = 43/83 (51%), Positives = 57/83 (68%)

Query:   103 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 162
             KLF+GML K  SE +V  LF  +G I++  ILRG    SKGCAF+KY +  +A AA+ A+
Sbjct:     2 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 61

Query:   163 NGKHKMEGSSVPLVVKWADTEKE 185
             +G   M G+S  LVVK+ADT+KE
Sbjct:    62 HGSQTMPGASSSLVVKFADTDKE 84

 Score = 166 (63.5 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
 Identities = 34/89 (38%), Positives = 51/89 (57%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  +E  +  +F+ F  ++E  I++     +  C FV   S  EA  A+NA 
Sbjct:     2 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 61

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             H  +T+PGASS L VK+AD + ER   ++
Sbjct:    62 HGSQTMPGASSSLVVKFADTDKERTMRRM 90

 Score = 70 (29.7 bits), Expect = 6.3e-13, Sum P(2) = 6.3e-13
 Identities = 18/63 (28%), Positives = 33/63 (52%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 161
             L I  LP+   +AE+  +F  +G +   ++   R + Q SK   F+ ++    A  A++A
Sbjct:   272 LLIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQ-SKCFGFVSFDNPASAQTAIQA 330

Query:   162 ING 164
             +NG
Sbjct:   331 MNG 333


>UNIPROTKB|E1BIM7 [details] [associations]
            symbol:LOC100851458 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0006376 "mRNA splice site selection" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006376
            GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:DAAA02035244
            IPI:IPI00924044 ProteinModelPortal:E1BIM7
            Ensembl:ENSBTAT00000011768 ArrayExpress:E1BIM7 Uniprot:E1BIM7
        Length = 397

 Score = 276 (102.2 bits), Expect = 2.1e-43, Sum P(2) = 2.1e-43
 Identities = 53/93 (56%), Positives = 62/93 (66%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP GANLFIYH+PQEFGDQ++   F  FG V+SAKVF+DK T +SKCFGFVSY++P 
Sbjct:   305 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 364

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    +KPY
Sbjct:   365 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 397

 Score = 215 (80.7 bits), Expect = 2.1e-43, Sum P(2) = 2.1e-43
 Identities = 43/101 (42%), Positives = 67/101 (66%)

Query:    87 PLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGC 144
             P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I++ +ILRG    S+GC
Sbjct:     4 PIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGC 63

Query:   145 AFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             AF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:    64 AFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 104

 Score = 152 (58.6 bits), Expect = 8.7e-37, Sum P(2) = 8.7e-37
 Identities = 30/89 (33%), Positives = 48/89 (53%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G V K   E  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:    22 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAM 81

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             H  +T+ G SSP+ VK+AD + ++ + +L
Sbjct:    82 HQSQTMEGCSSPIVVKFADTQKDKEQRRL 110


>UNIPROTKB|B4DIB6 [details] [associations]
            symbol:CELF2 "cDNA FLJ51739, highly similar to Homo sapiens
            CUG triplet repeat, RNA binding protein 2 (CUGBP2), transcript
            variant 2, mRNA" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
            "mRNA splice site selection" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
            OrthoDB:EOG4N8R4X GO:GO:0006376 EMBL:AL157704 EMBL:AL136320
            UniGene:Hs.309288 HGNC:HGNC:2550 ChiTaRS:CELF2 EMBL:AL136369
            EMBL:AL138769 EMBL:AL162408 EMBL:AK295511 IPI:IPI01011300
            SMR:B4DIB6 STRING:B4DIB6 Ensembl:ENST00000537122 UCSC:uc010qbo.1
            Uniprot:B4DIB6
        Length = 403

 Score = 276 (102.2 bits), Expect = 3.4e-43, Sum P(2) = 3.4e-43
 Identities = 53/93 (56%), Positives = 62/93 (66%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP GANLFIYH+PQEFGDQ++   F  FG V+SAKVF+DK T +SKCFGFVSY++P 
Sbjct:   311 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 370

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    +KPY
Sbjct:   371 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 403

 Score = 215 (80.7 bits), Expect = 3.4e-43, Sum P(2) = 3.4e-43
 Identities = 43/101 (42%), Positives = 67/101 (66%)

Query:    87 PLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGC 144
             P+Q+K AD E      + KLFIGM+ K  +E ++  +FS +G I++ +ILRG    S+GC
Sbjct:     4 PIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGC 63

Query:   145 AFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             AF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:    64 AFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 104

 Score = 152 (58.6 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
 Identities = 30/89 (33%), Positives = 48/89 (53%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G V K   E  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:    22 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAM 81

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             H  +T+ G SSP+ VK+AD + ++ + +L
Sbjct:    82 HQSQTMEGCSSPIVVKFADTQKDKEQRRL 110


>UNIPROTKB|A6H776 [details] [associations]
            symbol:BRUNOL4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0090394 "negative regulation of excitatory postsynaptic
            membrane potential" evidence=IEA] [GO:0048026 "positive regulation
            of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
            splice site selection" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 HOVERGEN:HBG107646
            KO:K13207 GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
            GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381 CTD:56853
            OMA:EDSEKNG EMBL:DAAA02056370 EMBL:DAAA02056371 EMBL:DAAA02056372
            EMBL:DAAA02056373 EMBL:DAAA02056374 EMBL:DAAA02056375
            EMBL:DAAA02056376 EMBL:DAAA02056377 EMBL:DAAA02056378 EMBL:BC146142
            IPI:IPI00907335 RefSeq:NP_001092538.1 UniGene:Bt.62140 SMR:A6H776
            Ensembl:ENSBTAT00000006498 GeneID:535177 KEGG:bta:535177
            InParanoid:A6H776 NextBio:20876649 Uniprot:A6H776
        Length = 475

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 138/444 (31%), Positives = 199/444 (44%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLF+GQ+P+++ E  L  +F+EF  + E+ ++KD+ T   + C F+    R+ A KA +
Sbjct:    54 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 113

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H +KTLPG + P+QVK AD E  R + KLF+GML K  SE +V  LF  +G I++  I
Sbjct:   114 ALHEQKTLPGMNRPIQVKPADSE-SRGDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTI 172

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 193
             LRG    SKGCAF+KY +  +A AA+ A++G   M G+S  LVVK+ADT+KE        
Sbjct:   173 LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ 232

Query:   194 XXXXXNNLPNADSQHPSLFGALPMGYAPPYNGY-GYQASGSY--GLMQYRLPPMQNQPGF 250
                      N  +     +GA                A G Y   +  +    MQ     
Sbjct:   233 MAGQMGMF-NPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAAL 291

Query:   251 H--GI----IPPVNQGNAMRG----ASPDLSSNMGPRNYA-MPPSGFVGSGYPAVPGL-- 297
             +  G+    + P + G+   G    A P + S +G   +  +PP     +G PA   +  
Sbjct:   292 NMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQA---NGQPAAEAVFA 348

Query:   298 QYPMPYPG-GMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHI 356
                 PYP        PL  +   V      + P                PP        I
Sbjct:   349 NGIHPYPAQSPTAADPLQQAYAGVQQY---AGPAAYPAAYGQISQAFPQPPPM------I 399

Query:   357 PQEFGDQELG-NAF-----QAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             PQ+  +   G N F     Q FG     ++F+         FGFVS+++PASAQ AI  M
Sbjct:   400 PQQQREGPEGCNLFIYHLPQEFGDAELMQMFLP--------FGFVSFDNPASAQTAIQAM 451

Query:   411 NGCXXXXXXXXXXXXRDNKQNKPY 434
             NG             R    N+PY
Sbjct:   452 NGFQIGMKRLKVQLKRPKDANRPY 475


>UNIPROTKB|Q4R535 [details] [associations]
            symbol:CELF4 "CUGBP Elav-like family member 4" species:9541
            "Macaca fascicularis" [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
            HOVERGEN:HBG107646 GO:GO:0048026 EMBL:AB169709
            ProteinModelPortal:Q4R535 SMR:Q4R535 Uniprot:Q4R535
        Length = 474

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 138/444 (31%), Positives = 200/444 (45%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLF+GQ+P+++ E  L  +F+EF  + E+ ++KD+ T   + C F+    R+ A KA +
Sbjct:    54 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 113

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H +KTLPG + P+QVK AD E  R + KLF+GML K  SE +V  LF  +G I++  I
Sbjct:   114 ALHEQKTLPGMNRPIQVKPADSE-SRGDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTI 172

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 193
             LRG    SKGCAF+KY +  +A AA+ A++G   M G+S  LVVK+ADT+KE        
Sbjct:   173 LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ 232

Query:   194 XXXXXNNLPNADSQHPSLFGALPMGYAPPYNGY-GYQASGSY--GLMQYRLPPMQNQPGF 250
                      N  +     +GA                A G Y   +  +    MQ     
Sbjct:   233 MAGQMGMF-NPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAAL 291

Query:   251 H--GI----IPPVNQGNAMRG----ASPDLSSNMGPRNYA-MPPSGFVGSGYPAVPGL-- 297
             +  G+    + P + G+   G    A P + S +G   +  +PP     +G PA   +  
Sbjct:   292 NMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQA---NGQPAAEAVFA 348

Query:   298 QYPMPYPG-GMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHI 356
                 PYP        PL  +   V      + P              + PP        I
Sbjct:   349 NGIHPYPAQSPTAADPLQQAYAGVQQYAGPAYPAAYGQISQAFP---QPPP-------MI 398

Query:   357 PQEFGDQELG-NAF-----QAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             PQ+  +   G N F     Q FG     ++F+         FGFVS+++PASAQ AI  M
Sbjct:   399 PQQQREGPEGCNLFIYHLPQEFGDAELMQMFLP--------FGFVSFDNPASAQTAIQAM 450

Query:   411 NGCXXXXXXXXXXXXRDNKQNKPY 434
             NG             R    N+PY
Sbjct:   451 NGFQIGMKRLKVQLKRPKDANRPY 474


>UNIPROTKB|Q6K271 [details] [associations]
            symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
            Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
            "regulation of flower development" evidence=ISS] [GO:0044428
            "nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
            PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
            SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
            Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
            EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
            EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
        Length = 738

 Score = 395 (144.1 bits), Expect = 5.5e-40, Sum P(2) = 5.5e-40
 Identities = 75/174 (43%), Positives = 116/174 (66%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKD-KTTRASRCCFVICPSRQEADKAVN 73
             VKLF+G VP+  TE  +  +F+E   V EV +IKD KT     CCFV   + +EA++A+ 
Sbjct:   122 VKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIR 181

Query:    74 ACHNKKTLPGASSPLQVKYADGELER---LEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
             A HN+ TLPGA  P+QV+YADGE ER   +EHKLF+  L K  +  E+  +F+ YG ++D
Sbjct:   182 ALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVED 241

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 184
             + I++   + S+GC F+K+ ++E ALAA+ A++G + M G   PL++++AD ++
Sbjct:   242 VYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFADPKR 295

 Score = 157 (60.3 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
 Identities = 35/112 (31%), Positives = 64/112 (57%)

Query:    82 PGASSPLQVKYADGELERLEH-------KLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
             PG S P   +Y  G  +  +H       KLFIG +P+  +E +V  LF  +G + ++ ++
Sbjct:    97 PG-SGPRH-RYGSGRGDHSDHDNRNNYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALI 154

Query:   135 RGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +  +    +GC F+KY T E+A  A+ A++ ++ + G+  P+ V++AD E+E
Sbjct:   155 KDRKTGEQQGCCFVKYATSEEAERAIRALHNQYTLPGAMGPIQVRYADGERE 206

 Score = 109 (43.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 26/84 (30%), Positives = 44/84 (52%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFV  + K  T  ++  +F  +  V++V I+KD   ++  C FV   SR+ A  A++A 
Sbjct:   214 KLFVASLNKQATAKEIEEIFAPYGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSAL 273

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
                  + G   PL +++AD +  R
Sbjct:   274 SGNYVMRGCEQPLIIRFADPKRPR 297

 Score = 62 (26.9 bits), Expect = 5.5e-40, Sum P(2) = 5.5e-40
 Identities = 39/162 (24%), Positives = 60/162 (37%)

Query:   170 GSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQ 229
             GS  P+  K +                  N   ++ +  PS   +  MG  PP    G+ 
Sbjct:   357 GSDNPMAPKGSTVTSTTDTATFRPQMFSGNGSLSSQTAVPS---SSHMGMNPPPMAQGHH 413

Query:   230 ASGSYGLMQYRLPPMQNQPGFHGIIPPV---NQ-GNAMRGASPDLSSNMGPRNYAMPPSG 285
               G       ++PP+Q  PG     P     NQ G  ++G +  +     P++  M P  
Sbjct:   414 LGGQ------QIPPLQKLPGLPQNFPVQLQNNQLGQPLQGPAQQIGQLQVPQS--MGPGS 465

Query:   286 FVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANS 327
             F   G   + G Q P+  P   L  +  + S   V  AV+NS
Sbjct:   466 F---GQNRLSG-QLPVSQP---LMQQNASVSAVQVPSAVSNS 500

 Score = 55 (24.4 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
 Identities = 19/69 (27%), Positives = 33/69 (47%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYES--PA-SAQNAI 407
             LF+  + ++   +E+   F  +G V    +  D       C GFV + S  PA +A +A+
Sbjct:   215 LFVASLNKQATAKEIEEIFAPYGHVEDVYIMKDGMRQSRGC-GFVKFSSREPALAAMSAL 273

Query:   408 A---MMNGC 413
             +   +M GC
Sbjct:   274 SGNYVMRGC 282


>UNIPROTKB|Q6WQT6 [details] [associations]
            symbol:Q6WQT6 "Flowering time control protein isoform
            OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0009909 "regulation of flower
            development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
            PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
            GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
            SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
            ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
            Uniprot:Q6WQT6
        Length = 738

 Score = 395 (144.1 bits), Expect = 5.5e-40, Sum P(2) = 5.5e-40
 Identities = 75/174 (43%), Positives = 116/174 (66%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKD-KTTRASRCCFVICPSRQEADKAVN 73
             VKLF+G VP+  TE  +  +F+E   V EV +IKD KT     CCFV   + +EA++A+ 
Sbjct:   122 VKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIR 181

Query:    74 ACHNKKTLPGASSPLQVKYADGELER---LEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
             A HN+ TLPGA  P+QV+YADGE ER   +EHKLF+  L K  +  E+  +F+ YG ++D
Sbjct:   182 ALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVED 241

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 184
             + I++   + S+GC F+K+ ++E ALAA+ A++G + M G   PL++++AD ++
Sbjct:   242 VYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFADPKR 295

 Score = 157 (60.3 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
 Identities = 35/112 (31%), Positives = 64/112 (57%)

Query:    82 PGASSPLQVKYADGELERLEH-------KLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
             PG S P   +Y  G  +  +H       KLFIG +P+  +E +V  LF  +G + ++ ++
Sbjct:    97 PG-SGPRH-RYGSGRGDHSDHDNRNNYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALI 154

Query:   135 RGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +  +    +GC F+KY T E+A  A+ A++ ++ + G+  P+ V++AD E+E
Sbjct:   155 KDRKTGEQQGCCFVKYATSEEAERAIRALHNQYTLPGAMGPIQVRYADGERE 206

 Score = 109 (43.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 26/84 (30%), Positives = 44/84 (52%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFV  + K  T  ++  +F  +  V++V I+KD   ++  C FV   SR+ A  A++A 
Sbjct:   214 KLFVASLNKQATAKEIEEIFAPYGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSAL 273

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
                  + G   PL +++AD +  R
Sbjct:   274 SGNYVMRGCEQPLIIRFADPKRPR 297

 Score = 62 (26.9 bits), Expect = 5.5e-40, Sum P(2) = 5.5e-40
 Identities = 39/162 (24%), Positives = 60/162 (37%)

Query:   170 GSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQ 229
             GS  P+  K +                  N   ++ +  PS   +  MG  PP    G+ 
Sbjct:   357 GSDNPMAPKGSTVTSTTDTATFRPQMFSGNGSLSSQTAVPS---SSHMGMNPPPMAQGHH 413

Query:   230 ASGSYGLMQYRLPPMQNQPGFHGIIPPV---NQ-GNAMRGASPDLSSNMGPRNYAMPPSG 285
               G       ++PP+Q  PG     P     NQ G  ++G +  +     P++  M P  
Sbjct:   414 LGGQ------QIPPLQKLPGLPQNFPVQLQNNQLGQPLQGPAQQIGQLQVPQS--MGPGS 465

Query:   286 FVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANS 327
             F   G   + G Q P+  P   L  +  + S   V  AV+NS
Sbjct:   466 F---GQNRLSG-QLPVSQP---LMQQNASVSAVQVPSAVSNS 500

 Score = 55 (24.4 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
 Identities = 19/69 (27%), Positives = 33/69 (47%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYES--PA-SAQNAI 407
             LF+  + ++   +E+   F  +G V    +  D       C GFV + S  PA +A +A+
Sbjct:   215 LFVASLNKQATAKEIEEIFAPYGHVEDVYIMKDGMRQSRGC-GFVKFSSREPALAAMSAL 273

Query:   408 A---MMNGC 413
             +   +M GC
Sbjct:   274 SGNYVMRGC 282


>UNIPROTKB|Q9BZC1 [details] [associations]
            symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
            site selection" evidence=IEA] [GO:0090394 "negative regulation of
            excitatory postsynaptic membrane potential" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
            evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
            [GO:0000900 "translation repressor activity, nucleic acid binding"
            evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
            splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
            GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
            GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
            GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
            EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
            EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
            IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
            RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
            RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
            PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
            SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
            PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
            Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
            KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
            UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
            HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
            PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
            ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
            NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
            Genevestigator:Q9BZC1 Uniprot:Q9BZC1
        Length = 486

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 138/454 (30%), Positives = 200/454 (44%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLF+GQ+P+++ E  L  +F+EF  + E+ ++KD+ T   + C F+    R+ A KA +
Sbjct:    54 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 113

Query:    74 ACHNKKTLPGASSPLQVKYADGE-------LER---LEHKLFIGMLPKNVSEAEVSALFS 123
             A H +KTLPG + P+QVK AD E       L +    + KLF+GML K  SE +V  LF 
Sbjct:   114 ALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFE 173

Query:   124 IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 183
              +G I++  ILRG    SKGCAF+KY +  +A AA+ A++G   M G+S  LVVK+ADT+
Sbjct:   174 AFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTD 233

Query:   184 KEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGY-GYQASGSY--GLMQYR 240
             KE                 N  +     +GA                A G Y   +  + 
Sbjct:   234 KERTMRRMQQMAGQMGMF-NPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFA 292

Query:   241 LPPMQNQPGFH--GI----IPPVNQGNAMRG----ASPDLSSNMGPRNYA-MPPSGFVGS 289
                MQ     +  G+    + P + G+   G    A P + S +G   +  +PP     +
Sbjct:   293 AAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQA---N 349

Query:   290 GYPAVPGL--QYPMPYPG-GMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGP 346
             G PA   +      PYP        PL  +   V      + P                P
Sbjct:   350 GQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQY---AGPAAYPAAYGQISQAFPQP 406

Query:   347 PGANLFIYHIPQEFGDQELG-NAF-----QAFGRVLSAKVFVDKATGVSKCFGFVSYESP 400
             P        IPQ+  +   G N F     Q FG     ++F+         FGFVS+++P
Sbjct:   407 PPM------IPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLP--------FGFVSFDNP 452

Query:   401 ASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             ASAQ AI  MNG             R    N+PY
Sbjct:   453 ASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 486


>UNIPROTKB|Q5NVC8 [details] [associations]
            symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
            "Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
            HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
            EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
            RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
            SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
            InParanoid:Q5NVC8 Uniprot:Q5NVC8
        Length = 486

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 138/454 (30%), Positives = 200/454 (44%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLF+GQ+P+++ E  L  +F+EF  + E+ ++KD+ T   + C F+    R+ A KA +
Sbjct:    54 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 113

Query:    74 ACHNKKTLPGASSPLQVKYADGE-------LER---LEHKLFIGMLPKNVSEAEVSALFS 123
             A H +KTLPG + P+QVK AD E       L +    + KLF+GML K  SE +V  LF 
Sbjct:   114 ALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFE 173

Query:   124 IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 183
              +G I++  ILRG    SKGCAF+KY +  +A AA+ A++G   M G+S  LVVK+ADT+
Sbjct:   174 AFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTD 233

Query:   184 KEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGY-GYQASGSY--GLMQYR 240
             KE                 N  +     +GA                A G Y   +  + 
Sbjct:   234 KERTMRRMQQMAGQMGMF-NPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFA 292

Query:   241 LPPMQNQPGFH--GI----IPPVNQGNAMRG----ASPDLSSNMGPRNYA-MPPSGFVGS 289
                MQ     +  G+    + P + G+   G    A P + S +G   +  +PP     +
Sbjct:   293 AAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQA---N 349

Query:   290 GYPAVPGL--QYPMPYPG-GMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGP 346
             G PA   +      PYP        PL  +   V      + P                P
Sbjct:   350 GQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQY---AGPAAYPAAYGQISQAFPQP 406

Query:   347 PGANLFIYHIPQEFGDQELG-NAF-----QAFGRVLSAKVFVDKATGVSKCFGFVSYESP 400
             P        IPQ+  +   G N F     Q FG     ++F+         FGFVS+++P
Sbjct:   407 PPM------IPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLP--------FGFVSFDNP 452

Query:   401 ASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             ASAQ AI  MNG             R    N+PY
Sbjct:   453 ASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 486


>UNIPROTKB|F1SAI1 [details] [associations]
            symbol:CELF4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0090394 "negative regulation of excitatory postsynaptic
            membrane potential" evidence=IEA] [GO:0048026 "positive regulation
            of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
            splice site selection" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026
            GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381
            OMA:SAMESIN EMBL:CU442705 EMBL:FP102263 Ensembl:ENSSSCT00000004150
            Uniprot:F1SAI1
        Length = 371

 Score = 232 (86.7 bits), Expect = 2.3e-36, Sum P(2) = 2.3e-36
 Identities = 65/180 (36%), Positives = 81/180 (45%)

Query:   266 ASPDLSSNMGPRNYA-MPPSGFVGSGYPAVPGL--QYPMPYPG-GMLGHRPLNNSPGSVS 321
             A P + S +G   +  +PP     +G PA   +      PYP        PL  +   V 
Sbjct:   195 AVPSIPSPIGVNGFTGLPPQA---NGQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQ 251

Query:   322 PAVANSNPXXXXXXXXXX--------XXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFG 373
                A + P                    Q EGP G NLFI H+PQEFGD EL   F  FG
Sbjct:   252 QYAAAAYPAAYGQISQAFPQPPPMIPQQQREGPEGCNLFICHLPQEFGDAELMQMFLPFG 311

Query:   374 RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKP 433
               +S+K FVD+ T  SKCFGFVS+++PASAQ AI  MNG             R    N+P
Sbjct:   312 NGISSKAFVDR-TNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRP 370

 Score = 215 (80.7 bits), Expect = 2.3e-36, Sum P(2) = 2.3e-36
 Identities = 43/85 (50%), Positives = 58/85 (68%)

Query:   101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 160
             + KLF+GML K  SE +V  LF  +G I++  ILRG    SKGCAF+KY +  +A AA+ 
Sbjct:    18 DRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAIN 77

Query:   161 AINGKHKMEGSSVPLVVKWADTEKE 185
             A++G   M G+S  LVVK+ADT+KE
Sbjct:    78 ALHGSQTMPGASSSLVVKFADTDKE 102

 Score = 166 (63.5 bits), Expect = 3.1e-31, Sum P(2) = 3.1e-31
 Identities = 34/89 (38%), Positives = 51/89 (57%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  +E  +  +F+ F  ++E  I++     +  C FV   S  EA  A+NA 
Sbjct:    20 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 79

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             H  +T+PGASS L VK+AD + ER   ++
Sbjct:    80 HGSQTMPGASSSLVVKFADTDKERTMRRM 108

 Score = 69 (29.3 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGT-IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 162
             LFI  LP+   +AE+  +F  +G  I     +  + Q SK   F+ ++    A  A++A+
Sbjct:   289 LFICHLPQEFGDAELMQMFLPFGNGISSKAFVDRTNQ-SKCFGFVSFDNPASAQTAIQAM 347

Query:   163 NG 164
             NG
Sbjct:   348 NG 349


>UNIPROTKB|B3KWE6 [details] [associations]
            symbol:BRUNOL6 "cDNA FLJ42868 fis, clone BRHIP2021615,
            highly similar to Homo sapiens bruno-like 6, RNA binding protein,
            mRNA" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471082 HOVERGEN:HBG107646 HOGENOM:HOG000004754 EMBL:AC009690
            UniGene:Hs.348342 HGNC:HGNC:14059 EMBL:AK124858 IPI:IPI01012509
            SMR:B3KWE6 STRING:B3KWE6 Ensembl:ENST00000539635 Uniprot:B3KWE6
        Length = 342

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 122/350 (34%), Positives = 162/350 (46%)

Query:   108 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 167
             ML K   E +V  LF  +G I++  +LR    TSKGCAF+K+ ++ +A AA+  ++G   
Sbjct:     1 MLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRT 60

Query:   168 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNN-----LP--------NADSQHPSLFGA 214
             M G+S  LVVK ADT++E                    LP         A  QH +   A
Sbjct:    61 MAGASSSLVVKLADTDRERALRRMQQMAGHLGAFHPAPLPLGACGAYTTAILQHQAALLA 120

Query:   215 LPMGYA-PPYNGYGYQAS--GSYGLMQYRLPPM---QNQPGFH-GIIPPVNQGNAMRGAS 267
                G    P      Q     ++ L+   L P     + PG   G +P +     + G  
Sbjct:   121 AAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLPAAAANSPPGSGPGTLPGLPAPIGVNGFG 180

Query:   268 PDLSSNMG-PRNYAMPPSGFVGSGYPAV-PGLQYPMPYP-GGMLGHRPLNNSPGSVSPAV 324
             P      G P +  +  +G   S YPA  PG+  P+     GM  H      P + +P V
Sbjct:   181 PLTPQTNGQPGSDTLYNNGL--SPYPAQSPGVADPLQQAYAGM--HHYAAAYPSAYAP-V 235

Query:   325 ANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK 384
             + + P            Q EGP G NLFIYH+PQEFGD EL   F  FG V+SAKVFVD+
Sbjct:   236 STAFPQQPSALPQQ---QREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDR 292

Query:   385 ATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             AT  SKCFGFVS+++P SAQ AI  MNG             R    N+PY
Sbjct:   293 ATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 342

 Score = 116 (45.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
 Identities = 25/76 (32%), Positives = 39/76 (51%)

Query:    24 KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPG 83
             K   E  +  +F+ F  ++E  +++     +  C FV   S+ EA  A+   H  +T+ G
Sbjct:     4 KQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAG 63

Query:    84 ASSPLQVKYADGELER 99
             ASS L VK AD + ER
Sbjct:    64 ASSSLVVKLADTDRER 79

 Score = 74 (31.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 161
             LFI  LP+   +AE+   F  +G +   ++   R + Q SK   F+ ++    A  A++A
Sbjct:   259 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQ-SKCFGFVSFDNPTSAQTAIQA 317

Query:   162 ING 164
             +NG
Sbjct:   318 MNG 320


>RGD|1565016 [details] [associations]
            symbol:Celf5 "CUGBP, Elav-like family member 5" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1565016 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            KO:K13207 GeneTree:ENSGT00560000076837 OrthoDB:EOG4RJG30 CTD:60680
            IPI:IPI00914219 RefSeq:NP_001129075.1 UniGene:Rn.12319
            ProteinModelPortal:D4A8V0 Ensembl:ENSRNOT00000061219 GeneID:314647
            KEGG:rno:314647 UCSC:RGD:1565016 NextBio:668034 Uniprot:D4A8V0
        Length = 395

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 110/314 (35%), Positives = 155/314 (49%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLFVGQ+P+H+ E  L  +F++F  + E+ ++KD  T   + C F+   +R  A KA  
Sbjct:     7 IKLFVGQIPRHLHEQDLKPLFEQFGRIYELTVLKDPHTGVHKGCAFLTYCARDSAIKAQT 66

Query:    74 ACHNKKTLPGASSPLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
             A H +KTLPG + P+QVK AD E     + KLF+GML K  SE +V  LF  +G I +  
Sbjct:    67 ALHEQKTLPGMARPIQVKPADSENRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECT 126

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXX 192
             +LRG   +SKGCAF+K+ +  +A AA+ A++G   M G+S  LVVK+ADT+KE       
Sbjct:   127 VLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQ 186

Query:   193 XXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGY----------QASGSYGLMQYRLP 242
                     L       PSL   LP     PY+ Y              SGSY       P
Sbjct:   187 QMVGQLGILT------PSL--TLPFS---PYSAYAQALMQQQTTVLSTSGSYLSPGVAFP 235

Query:   243 PMQNQP----GFHGI-IPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGS-GYPAV-P 295
             P   Q       +G+   P+   + +  + P L +   P      PSGF G   +P   P
Sbjct:   236 PCHIQQIGTVSLNGLPATPIAPASGLH-SPPLLGTAAVPGLMTSIPSGFPGVLPFPGSHP 294

Query:   296 GLQ--YP---MPYP 304
              L+  Y    +PYP
Sbjct:   295 ALETVYANGLVPYP 308


>UNIPROTKB|F1SID9 [details] [associations]
            symbol:CELF1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
            [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
            regulation of multicellular organism growth" evidence=IEA]
            [GO:0031369 "translation initiation factor binding" evidence=IEA]
            [GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
            splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0043484 GO:GO:0042835 GeneTree:ENSGT00560000076837
            EMBL:CU856103 Ensembl:ENSSSCT00000014453 OMA:INQPITQ Uniprot:F1SID9
        Length = 344

 Score = 266 (98.7 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
 Identities = 57/116 (49%), Positives = 66/116 (56%)

Query:   322 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 381
             P + N N             Q EGP GANLFIYH+PQEFGDQ+L   F  FG V+SAKVF
Sbjct:   230 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 288

Query:   382 VDKATGVSKCFG---FVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             +DK T +SKCFG   FVSY++P SAQ AI  MNG             R    +KPY
Sbjct:   289 IDKQTNLSKCFGHTGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 344

 Score = 111 (44.1 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
 Identities = 33/114 (28%), Positives = 56/114 (49%)

Query:    57 CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEA 116
             C FV   +R  A  A+ A H  +T+ G SSP+ VK+AD + ++ E K     L + + + 
Sbjct:     2 CAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ- 59

Query:   117 EVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 170
              +SA  S++G +  L  L G Q  +    +L+   +  +   L  ++  H M G
Sbjct:    60 -ISAA-SVWGNLAGLNTL-GPQYLA---LYLQLLQQTASSGNLNTLSSLHPMGG 107

 Score = 108 (43.1 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
 Identities = 20/43 (46%), Positives = 31/43 (72%)

Query:   143 GCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             GCAF+ + T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:     1 GCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 43


>UNIPROTKB|H9L0T2 [details] [associations]
            symbol:H9L0T2 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 EMBL:AADN02043362 EMBL:AADN02043363
            Ensembl:ENSGALT00000028399 Uniprot:H9L0T2
        Length = 225

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 72/169 (42%), Positives = 103/169 (60%)

Query:    20 GQVPKHMTEAQLLAMFKEF-ALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHN 77
             GQ+P+++ E    A  K   A  +E+ ++KD+ T   + C F+   +R  A KA  A H 
Sbjct:    22 GQIPRNLEEKGPQAANKNSSARSNELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTALHE 81

Query:    78 KKTLPGASSPLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG 136
             +KTLPG + P+QVK AD E     + KLF+GML K  SE +V  LF  +G I +  +LRG
Sbjct:    82 QKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEDDVLRLFEPFGVIDECTVLRG 141

Query:   137 SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
                 SKGCAF+K+ +  +A AA+ A++G   M G+S  LVVK+ADT+KE
Sbjct:   142 PDGNSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 190

 Score = 173 (66.0 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 34/84 (40%), Positives = 51/84 (60%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  +E  +L +F+ F ++DE  +++     +  C FV   S  EA  A++A 
Sbjct:   108 KLFVGMLNKQQSEDDVLRLFEPFGVIDECTVLRGPDGNSKGCAFVKFSSHTEAQAAIHAL 167

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             H  +T+PGASS L VK+AD + ER
Sbjct:   168 HGSQTMPGASSSLVVKFADTDKER 191


>UNIPROTKB|A1L544 [details] [associations]
            symbol:TNRC4 "Trinucleotide repeat containing 4"
            species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 UniGene:Bt.18201 HOVERGEN:HBG002295
            EMBL:DAAA02007247 EMBL:BT029831 IPI:IPI00906974 SMR:A1L544
            Ensembl:ENSBTAT00000056432 HOGENOM:HOG000220928 Uniprot:A1L544
        Length = 139

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 58/131 (44%), Positives = 84/131 (64%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLFVGQ+P+H+ E  L  +F++F  + E+ +IKDK T   + C F+   +R  A KA +
Sbjct:     7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66

Query:    74 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             A H +KTLPG + P+QVK AD E    + KLF+GML K  ++ +V  +F  +GTI +  +
Sbjct:    67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126

Query:   134 LRGSQQTSKGC 144
             LRG   TSKGC
Sbjct:   127 LRGPDGTSKGC 137

 Score = 140 (54.3 bits), Expect = 6.3e-09, P = 6.3e-09
 Identities = 28/82 (34%), Positives = 50/82 (60%)

Query:   103 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEA 161
             KLF+G +P+++ E ++  +F  +G I +L +++       KGCAFL Y  ++ AL A  A
Sbjct:     8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67

Query:   162 INGKHKMEGSSVPLVVKWADTE 183
             ++ +  + G + P+ VK AD+E
Sbjct:    68 LHEQKTLPGMNRPIQVKPADSE 89


>UNIPROTKB|Q0V9L3 [details] [associations]
            symbol:celf4 "CUGBP Elav-like family member 4" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646 KO:K13207
            GO:GO:0048026 CTD:56853 EMBL:BC121490 RefSeq:NP_001072378.1
            UniGene:Str.35078 ProteinModelPortal:Q0V9L3 SMR:Q0V9L3
            GeneID:779831 KEGG:xtr:779831 Xenbase:XB-GENE-5873699
            Uniprot:Q0V9L3
        Length = 424

 Score = 183 (69.5 bits), Expect = 8.7e-25, Sum P(3) = 8.7e-25
 Identities = 35/83 (42%), Positives = 55/83 (66%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLF+GQ+P+++ E  L  +F+EF  + E+ ++KD+ T   + C F+    R+ A KA +
Sbjct:    47 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 106

Query:    74 ACHNKKTLPGASSPLQVKYADGE 96
             A H +KTLPG + P+QVK AD E
Sbjct:   107 ALHEQKTLPGMNRPIQVKPADSE 129

 Score = 151 (58.2 bits), Expect = 7.5e-21, Sum P(3) = 7.5e-21
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query:   103 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEA 161
             KLFIG +P+N+ E ++  LF  +G I +L +L+       KGCAFL Y  +E AL A  A
Sbjct:    48 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 107

Query:   162 INGKHKMEGSSVPLVVKWADTE 183
             ++ +  + G + P+ VK AD+E
Sbjct:   108 LHEQKTLPGMNRPIQVKPADSE 129

 Score = 129 (50.5 bits), Expect = 3.1e-18, Sum P(3) = 3.1e-18
 Identities = 25/60 (41%), Positives = 39/60 (65%)

Query:   126 GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             G  + +Q+     ++  GCAF+KY +  +A AA+ A++G   M G+S  LVVK+ADT+KE
Sbjct:   116 GMNRPIQVKPADSESRGGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 175

 Score = 117 (46.2 bits), Expect = 8.7e-25, Sum P(3) = 8.7e-25
 Identities = 23/34 (67%), Positives = 24/34 (70%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRV 375
             Q EGP G NLFIYH+PQEFGD EL   F  FG V
Sbjct:   352 QREGPEGCNLFIYHLPQEFGDAELMQMFLPFGFV 385

 Score = 115 (45.5 bits), Expect = 1.2e-16, Sum P(3) = 1.2e-16
 Identities = 25/56 (44%), Positives = 33/56 (58%)

Query:    49 DKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKL 104
             D  +R   C FV   S  EA  A+NA H  +T+PGASS L VK+AD + ER   ++
Sbjct:   127 DSESRGG-CAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM 181

 Score = 87 (35.7 bits), Expect = 8.7e-25, Sum P(3) = 8.7e-25
 Identities = 19/43 (44%), Positives = 23/43 (53%)

Query:   392 FGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             FGFVS+++PASAQ AI  MNG             R    N+PY
Sbjct:   382 FGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 424

 Score = 44 (20.5 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query:   394 FVSYESPASAQNAIAMMNG 412
             FV Y S A AQ AI  ++G
Sbjct:   136 FVKYSSHAEAQAAINALHG 154

 Score = 43 (20.2 bits), Expect = 3.5e-17, Sum P(3) = 3.5e-17
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTI 128
             LFI  LP+   +AE+  +F  +G +
Sbjct:   361 LFIYHLPQEFGDAELMQMFLPFGFV 385

 Score = 41 (19.5 bits), Expect = 1.7e-12, Sum P(3) = 1.7e-12
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query:   146 FLKYETKEQALAALEAING 164
             F+ ++    A AA++A+NG
Sbjct:   384 FVSFDNPASAQAAIQAMNG 402


>UNIPROTKB|F1RUN0 [details] [associations]
            symbol:CELF2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006376 "mRNA splice site selection" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006376
            GeneTree:ENSGT00560000076837 EMBL:CU896684
            Ensembl:ENSSSCT00000012171 OMA:PANNENR Uniprot:F1RUN0
        Length = 236

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 53/93 (56%), Positives = 62/93 (66%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP GANLFIYH+PQEFGDQ++   F  FG V+SAKVF+DK T +SKCFGFVSY++P 
Sbjct:   144 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 203

Query:   402 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             SAQ AI  MNG             R    +KPY
Sbjct:   204 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 236


>UNIPROTKB|B4DQL3 [details] [associations]
            symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
            HOGENOM:HOG000004754 EMBL:AL589765 UniGene:Hs.26047 HGNC:HGNC:11967
            EMBL:AK298852 IPI:IPI00909704 SMR:B4DQL3 STRING:B4DQL3
            Ensembl:ENST00000392706 UCSC:uc010pdh.2 Uniprot:B4DQL3
        Length = 260

 Score = 258 (95.9 bits), Expect = 3.6e-22, P = 3.6e-22
 Identities = 67/170 (39%), Positives = 81/170 (47%)

Query:   274 MGPRNYAMPPSGFVGSGYPAVPGLQYPM---PYPGGMLGHRPLNNSPGSVSPAVANSNP- 329
             +G   Y+  P+    +G PA P   YP    PYP        L        PA+    P 
Sbjct:    94 LGVNGYSPVPTQ--PTGQPA-PDALYPNGVHPYPAAYPAAYSLVAPAFPQPPALVAQQPP 150

Query:   330 -----XXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK 384
                              Q EGP G N+FIYH+PQEF D E+   F  FG V+SAKVFVD+
Sbjct:   151 PPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDR 210

Query:   385 ATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
             AT  SKCFGFVS+++PASAQ AI  MNG             R    N+PY
Sbjct:   211 ATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 260


>UNIPROTKB|K7EJD7 [details] [associations]
            symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
            EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000589386 Uniprot:K7EJD7
        Length = 185

 Score = 258 (95.9 bits), Expect = 3.6e-22, P = 3.6e-22
 Identities = 49/71 (69%), Positives = 56/71 (78%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             Q EGP G NLFIYH+PQEFGD EL   F  FG V+S+KVFVD+AT  SKCFGFVS+++PA
Sbjct:   107 QREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPA 166

Query:   402 SAQNAIAMMNG 412
             SAQ AI  MNG
Sbjct:   167 SAQTAIQAMNG 177


>UNIPROTKB|F1M3I9 [details] [associations]
            symbol:Brunol4 "Protein Brunol4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00358672
            Ensembl:ENSRNOT00000019548 ArrayExpress:F1M3I9 Uniprot:F1M3I9
        Length = 306

 Score = 213 (80.0 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
 Identities = 43/83 (51%), Positives = 57/83 (68%)

Query:   103 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 162
             KLF+GML K  SE +V  LF  +G I++  ILRG    SKGCAF+KY +  +A AA+ A+
Sbjct:     2 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 61

Query:   163 NGKHKMEGSSVPLVVKWADTEKE 185
             +G   M G+S  LVVK+ADT+KE
Sbjct:    62 HGSQTMPGASSSLVVKFADTDKE 84

 Score = 166 (63.5 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
 Identities = 34/89 (38%), Positives = 51/89 (57%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  +E  +  +F+ F  ++E  I++     +  C FV   S  EA  A+NA 
Sbjct:     2 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 61

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             H  +T+PGASS L VK+AD + ER   ++
Sbjct:    62 HGSQTMPGASSSLVVKFADTDKERTMRRM 90

 Score = 89 (36.4 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
 Identities = 58/229 (25%), Positives = 85/229 (37%)

Query:   216 PMGYAPPYNGYGYQASGSYGLMQYRLPPMQN--QPGFHGIIPPVNQGNAMRGASPDLS-- 271
             PM  A P+  YG  A     LMQ +   M +  Q G+   +         + A+ +++  
Sbjct:   102 PM--AIPFGAYGAYAQA---LMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGL 156

Query:   272 --SNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 329
               + M P +    P G      PAVP +    P P G+ G   L        P  AN  P
Sbjct:   157 AAAPMTPTSGGSTPPGITA---PAVPSI----PSPIGVNGFTGL--------PPQANGQP 201

Query:   330 XXXXXXXXXXX-XQIEGPPGANLFIYHIPQEFG--DQELGNAFQA-FGRVLSAKVFVDKA 385
                            + P  A+     + Q +    Q  G A+ A +G++  A       
Sbjct:   202 AAEAVFANGIHPYPAQSPTAAD----PLQQAYAGVQQYAGPAYPAAYGQISQAFPQPPPM 257

Query:   386 TGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 434
                 +  GFVS+++PASAQ AI  MNG             R    N+PY
Sbjct:   258 IPQQQREGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 306

 Score = 41 (19.5 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query:   138 QQTSKGCAFLKYETKEQALAALEAING 164
             QQ  +G  F+ ++    A  A++A+NG
Sbjct:   260 QQQREG--FVSFDNPASAQTAIQAMNG 284


>UNIPROTKB|F1P311 [details] [associations]
            symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 EMBL:AADN02033464 IPI:IPI01017320
            Ensembl:ENSGALT00000038509 ArrayExpress:F1P311 Uniprot:F1P311
        Length = 328

 Score = 199 (75.1 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
 Identities = 40/95 (42%), Positives = 62/95 (65%)

Query:    93 ADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYE 150
             AD E      + KLFIGM+ K  +E ++  +FS +G I++ +ILRG    S+GCAF+ + 
Sbjct:     2 ADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFT 61

Query:   151 TKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:    62 TRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKD 96

 Score = 170 (64.9 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
 Identities = 45/155 (29%), Positives = 75/155 (48%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G + K   E  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:    14 KLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 73

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR 135
             H  +T+ G SSP+ VK+AD + ++ E K     L + + +  +SA  S++G +  L  L 
Sbjct:    74 HQAQTMEGCSSPIVVKFADTQKDK-EQKRIAQQLQQQMQQ--ISAA-SVWGNLAGLNTL- 128

Query:   136 GSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 170
             G Q  +     L+ +T   +   L  ++  H M G
Sbjct:   129 GPQYLALYLQLLQ-QTAAASSGNLNTLSSLHPMGG 162

 Score = 112 (44.5 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
 Identities = 20/24 (83%), Positives = 22/24 (91%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQEL 365
             Q EGP GANLFIYH+PQEFGDQ+L
Sbjct:   302 QKEGPEGANLFIYHLPQEFGDQDL 325


>GENEDB_PFALCIPARUM|MAL8P1.40 [details] [associations]
            symbol:MAL8P1.40 "RNA-binding protein,
            putative" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0006417 "regulation of translation"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
            PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
            GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051
            RefSeq:XP_001349292.1 ProteinModelPortal:Q8IB66 IntAct:Q8IB66
            MINT:MINT-1560303 EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381
            KEGG:pfa:MAL8P1.40 EuPathDB:PlasmoDB:PF3D7_0823200
            HOGENOM:HOG000282627 OMA:QHFQHFG ProtClustDB:CLSZ2431748
            Uniprot:Q8IB66
        Length = 286

 Score = 174 (66.3 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
 Identities = 35/68 (51%), Positives = 48/68 (70%)

Query:   345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQ 404
             GPPGAN+F++H+P  + D EL   FQ FG V+SA++  D A G +K +GFVS+ +P SA 
Sbjct:   146 GPPGANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRD-ANGRNKGYGFVSFNNPESAL 204

Query:   405 NAIAMMNG 412
             NAI  M+G
Sbjct:   205 NAIKGMHG 212

 Score = 136 (52.9 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
 Identities = 29/78 (37%), Positives = 48/78 (61%)

Query:   103 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 162
             K+FIG +PK+V+E E+    + YGTI  +  +  + Q+ +G AF+ YE + +A  A+EA+
Sbjct:     8 KIFIGSIPKDVTEEELKTEAAKYGTITQVYYVPATAQSPRGWAFITYEQRSEAYKAIEAL 67

Query:   163 NGKHKMEGSSVPLVVKWA 180
             + K     S  PL V++A
Sbjct:    68 DYKCIFPNSQRPLDVRFA 85

 Score = 105 (42.0 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
 Identities = 24/79 (30%), Positives = 41/79 (51%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNA 74
             K+F+G +PK +TE +L     ++  + +V  +   T ++ R   F+    R EA KA+ A
Sbjct:     8 KIFIGSIPKDVTEEELKTEAAKYGTITQVYYVP-ATAQSPRGWAFITYEQRSEAYKAIEA 66

Query:    75 CHNKKTLPGASSPLQVKYA 93
                K   P +  PL V++A
Sbjct:    67 LDYKCIFPNSQRPLDVRFA 85

 Score = 77 (32.2 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
 Identities = 18/75 (24%), Positives = 40/75 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 163
             +F+  LP + ++ E+   F  +G +   +I R +   +KG  F+ +   E AL A++ ++
Sbjct:   152 VFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIKGMH 211

Query:   164 GKHKMEGSSVPLVVK 178
             G + + G  + + +K
Sbjct:   212 GFY-VSGKHLKVQLK 225


>UNIPROTKB|Q8IB66 [details] [associations]
            symbol:MAL8P1.40 "RNA binding protein, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0006417 "regulation of translation" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
            PROSITE:PS50102 SMART:SM00360 SMART:SM00456 GO:GO:0006417
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:2.20.70.10
            SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051 RefSeq:XP_001349292.1
            ProteinModelPortal:Q8IB66 IntAct:Q8IB66 MINT:MINT-1560303
            EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381 KEGG:pfa:MAL8P1.40
            EuPathDB:PlasmoDB:PF3D7_0823200 HOGENOM:HOG000282627 OMA:QHFQHFG
            ProtClustDB:CLSZ2431748 Uniprot:Q8IB66
        Length = 286

 Score = 174 (66.3 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
 Identities = 35/68 (51%), Positives = 48/68 (70%)

Query:   345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQ 404
             GPPGAN+F++H+P  + D EL   FQ FG V+SA++  D A G +K +GFVS+ +P SA 
Sbjct:   146 GPPGANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRD-ANGRNKGYGFVSFNNPESAL 204

Query:   405 NAIAMMNG 412
             NAI  M+G
Sbjct:   205 NAIKGMHG 212

 Score = 136 (52.9 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
 Identities = 29/78 (37%), Positives = 48/78 (61%)

Query:   103 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 162
             K+FIG +PK+V+E E+    + YGTI  +  +  + Q+ +G AF+ YE + +A  A+EA+
Sbjct:     8 KIFIGSIPKDVTEEELKTEAAKYGTITQVYYVPATAQSPRGWAFITYEQRSEAYKAIEAL 67

Query:   163 NGKHKMEGSSVPLVVKWA 180
             + K     S  PL V++A
Sbjct:    68 DYKCIFPNSQRPLDVRFA 85

 Score = 105 (42.0 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
 Identities = 24/79 (30%), Positives = 41/79 (51%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNA 74
             K+F+G +PK +TE +L     ++  + +V  +   T ++ R   F+    R EA KA+ A
Sbjct:     8 KIFIGSIPKDVTEEELKTEAAKYGTITQVYYVP-ATAQSPRGWAFITYEQRSEAYKAIEA 66

Query:    75 CHNKKTLPGASSPLQVKYA 93
                K   P +  PL V++A
Sbjct:    67 LDYKCIFPNSQRPLDVRFA 85

 Score = 77 (32.2 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
 Identities = 18/75 (24%), Positives = 40/75 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 163
             +F+  LP + ++ E+   F  +G +   +I R +   +KG  F+ +   E AL A++ ++
Sbjct:   152 VFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIKGMH 211

Query:   164 GKHKMEGSSVPLVVK 178
             G + + G  + + +K
Sbjct:   212 GFY-VSGKHLKVQLK 225


>UNIPROTKB|F1P022 [details] [associations]
            symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 EMBL:AADN02039408 EMBL:AADN02039409
            EMBL:AADN02039410 EMBL:AADN02039411 EMBL:AADN02039412
            EMBL:AADN02039413 EMBL:AADN02039414 EMBL:AADN02039415
            EMBL:AADN02039416 EMBL:AADN02039417 EMBL:AADN02039418
            EMBL:AADN02039419 EMBL:AADN02039420 EMBL:AADN02039421
            EMBL:AADN02039422 EMBL:AADN02039423 EMBL:AADN02039424
            EMBL:AADN02039425 EMBL:AADN02039426 EMBL:AADN02039427
            EMBL:AADN02039428 EMBL:AADN02039429 EMBL:AADN02039430
            EMBL:AADN02039431 EMBL:AADN02039432 EMBL:AADN02039433
            IPI:IPI00574286 Ensembl:ENSGALT00000040033 ArrayExpress:F1P022
            Uniprot:F1P022
        Length = 325

 Score = 198 (74.8 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
 Identities = 40/95 (42%), Positives = 62/95 (65%)

Query:    93 ADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYE 150
             AD E      + KLFIGM+ K  +E ++  +FS +G I++ +ILRG    S+GCAF+ + 
Sbjct:     2 ADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFS 61

Query:   151 TKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             T+  A  A++A++    MEG S P+VVK+ADT+K+
Sbjct:    62 TRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 96

 Score = 162 (62.1 bits), Expect = 8.3e-17, Sum P(2) = 8.3e-17
 Identities = 39/132 (29%), Positives = 67/132 (50%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLF+G V K   E  +  MF  F  ++E  I++     +  C FV   +R  A  A+ A 
Sbjct:    14 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAM 73

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKLF--IGMLPKNVSEAEVSALFSIYG-TIKDLQ 132
             H  +T+ G SSP+ VK+AD + ++ + +L   +    + ++ A    L  + G T + L 
Sbjct:    74 HQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLA 133

Query:   133 ILRGSQQTSKGC 144
             +L+ +  +S GC
Sbjct:   134 LLQQATSSSNGC 145

 Score = 110 (43.8 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
 Identities = 19/24 (79%), Positives = 22/24 (91%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQEL 365
             Q EGP GANLFIYH+PQEFGDQ++
Sbjct:   299 QKEGPEGANLFIYHLPQEFGDQDI 322


>UNIPROTKB|Q3ZCE2 [details] [associations]
            symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
            Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
            [GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
            HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
            OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
            OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
            IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
            STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
            KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
        Length = 326

 Score = 205 (77.2 bits), Expect = 9.2e-21, Sum P(2) = 9.2e-21
 Identities = 53/171 (30%), Positives = 97/171 (56%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             R  L V  +P++MT+ +L ++F     V+   +I+DK    S    FV   + ++A++A+
Sbjct:    19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78

Query:    73 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     S  ++V YA    E ++   L+I  LP+N+++ +V  +FS +G I + 
Sbjct:    79 NTLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGRIINS 135

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
             ++L   Q T  S+G AF++++ + +A  A+ + NG HK  GSS P+ VK+A
Sbjct:   136 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 184

 Score = 124 (48.7 bits), Expect = 5.5e-05, P = 5.5e-05
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL+I  +P+    +++ + F  FGR+++++V VD+ TG+S+   F+ ++  + A+ AI 
Sbjct:   106 ANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165

Query:   409 MMNG 412
               NG
Sbjct:   166 SFNG 169

 Score = 119 (46.9 bits), Expect = 0.00020, P = 0.00020
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ     EL + F + G V SAK+  DK  G S  +GFV+Y +   A+ AI  
Sbjct:    21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80

Query:   410 MNG 412
             +NG
Sbjct:    81 LNG 83

 Score = 95 (38.5 bits), Expect = 9.2e-21, Sum P(2) = 9.2e-21
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             +FIY++ Q+  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +
Sbjct:   246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305

Query:   411 NG 412
             NG
Sbjct:   306 NG 307


>TAIR|locus:2065190 [details] [associations]
            symbol:AT2G47310 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR001202
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
            PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045
            EMBL:BT015132 EMBL:BT015799 EMBL:AK229352 IPI:IPI00531580
            RefSeq:NP_850472.1 UniGene:At.36378 ProteinModelPortal:Q6AWW6
            SMR:Q6AWW6 PRIDE:Q6AWW6 EnsemblPlants:AT2G47310.1 GeneID:819344
            KEGG:ath:AT2G47310 TAIR:At2g47310 HOGENOM:HOG000084673
            InParanoid:Q6AWW6 OMA:RERIGFA PhylomeDB:Q6AWW6
            ProtClustDB:CLSN2918289 Genevestigator:Q6AWW6 Uniprot:Q6AWW6
        Length = 512

 Score = 261 (96.9 bits), Expect = 2.5e-20, P = 2.5e-20
 Identities = 61/180 (33%), Positives = 104/180 (57%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT--RASRCCFVICPSRQEADKAVN 73
             KL+V  + K  TE  +  +F+++  V E+ + KDK T  RA+ C F+     +E + A+ 
Sbjct:   111 KLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYC-FIKYKKVEEGNAAIA 169

Query:    74 ACHNKKTLPGASSPLQVKYADGELERL---------EHKLFIGMLPKNVSEAEVSALFSI 124
             A   + T PG   P++V++A+ E ER+           KL++  L K  ++ EV+ +FS 
Sbjct:   170 ALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPKLYVRCLNKQTTKMEVNEVFSR 229

Query:   125 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 184
             YG I+D+ +     +  +G AF+++  KE ALAA++A+NG   + GS  PL+V++AD +K
Sbjct:   230 YGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRGSDQPLIVRFADPKK 289


>UNIPROTKB|K7EQ97 [details] [associations]
            symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
            EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000587819 Uniprot:K7EQ97
        Length = 154

 Score = 242 (90.2 bits), Expect = 2.9e-20, P = 2.9e-20
 Identities = 51/99 (51%), Positives = 67/99 (67%)

Query:    87 PLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAF 146
             P+QVK AD E  R + KLF+GML K  SE +V  LF  +G I++  ILRG    SKGCAF
Sbjct:     4 PIQVKPADSE-SRGDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAF 62

Query:   147 LKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +KY +  +A AA+ A++G   M G+S  LVVK+ADT+KE
Sbjct:    63 VKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 101

 Score = 166 (63.5 bits), Expect = 9.1e-12, P = 9.1e-12
 Identities = 34/89 (38%), Positives = 51/89 (57%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  +E  +  +F+ F  ++E  I++     +  C FV   S  EA  A+NA 
Sbjct:    19 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 78

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             H  +T+PGASS L VK+AD + ER   ++
Sbjct:    79 HGSQTMPGASSSLVVKFADTDKERTMRRM 107


>UNIPROTKB|D3K5N7 [details] [associations]
            symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
            Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
            "positive regulation of translation" evidence=IEA] [GO:0019901
            "protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
            GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
            EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
            ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
            GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
        Length = 326

 Score = 199 (75.1 bits), Expect = 4.8e-20, Sum P(2) = 4.8e-20
 Identities = 51/171 (29%), Positives = 96/171 (56%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             R  L V  +P++MT+ +L ++F     ++   +I+DK    S    FV   + ++A++A+
Sbjct:    19 RTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78

Query:    73 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     S  ++V YA    E ++   L+I  LP+ +++ +V  +FS +G I + 
Sbjct:    79 NTLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSPFGRIINS 135

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
             ++L   Q T  S+G AF++++ + +A  A+ + NG HK  GSS P+ VK+A
Sbjct:   136 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 184

 Score = 123 (48.4 bits), Expect = 7.1e-05, P = 7.1e-05
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL+I  +P+    +++ + F  FGR+++++V VD+ TG+S+   F+ ++  + A+ AI 
Sbjct:   106 ANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165

Query:   409 MMNG 412
               NG
Sbjct:   166 SFNG 169

 Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +EL + F + G + SAK+  DK  G S  +GFV+Y +   A+ AI  
Sbjct:    21 NLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80

Query:   410 MNG 412
             +NG
Sbjct:    81 LNG 83

 Score = 96 (38.9 bits), Expect = 4.8e-20, Sum P(2) = 4.8e-20
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             +FIY++ Q+  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +
Sbjct:   246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305

Query:   411 NG 412
             NG
Sbjct:   306 NG 307


>UNIPROTKB|Q15717 [details] [associations]
            symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
            "mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
            "AU-rich element binding" evidence=IDA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
            "mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
            "positive regulation of translation" evidence=IDA] [GO:0003729
            "mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
            development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS]
            Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
            GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
            GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
            EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
            UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
            PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
            SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
            PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
            PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
            KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
            HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
            PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
            OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
            ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
            NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
            Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
            Uniprot:Q15717
        Length = 326

 Score = 199 (75.1 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
 Identities = 52/171 (30%), Positives = 96/171 (56%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             R  L V  +P++MT+ +L ++F     V+   +I+DK    S    FV   + ++A++A+
Sbjct:    19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78

Query:    73 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     S  ++V YA    E ++   L+I  LP+ +++ +V  +FS +G I + 
Sbjct:    79 NTLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 135

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
             ++L   Q T  S+G AF++++ + +A  A+ + NG HK  GSS P+ VK+A
Sbjct:   136 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 184

 Score = 123 (48.4 bits), Expect = 7.1e-05, P = 7.1e-05
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL+I  +P+    +++ + F  FGR+++++V VD+ TG+S+   F+ ++  + A+ AI 
Sbjct:   106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165

Query:   409 MMNG 412
               NG
Sbjct:   166 SFNG 169

 Score = 119 (46.9 bits), Expect = 0.00020, P = 0.00020
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ     EL + F + G V SAK+  DK  G S  +GFV+Y +   A+ AI  
Sbjct:    21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80

Query:   410 MNG 412
             +NG
Sbjct:    81 LNG 83

 Score = 95 (38.5 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             +FIY++ Q+  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +
Sbjct:   246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305

Query:   411 NG 412
             NG
Sbjct:   306 NG 307


>UNIPROTKB|F1PSC4 [details] [associations]
            symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
            Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
        Length = 334

 Score = 199 (75.1 bits), Expect = 7.9e-20, Sum P(2) = 7.9e-20
 Identities = 52/171 (30%), Positives = 96/171 (56%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             R  L V  +P++MT+ +L ++F     V+   +I+DK    S    FV   + ++A++A+
Sbjct:    27 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 86

Query:    73 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     S  ++V YA    E ++   L+I  LP+ +++ +V  +FS +G I + 
Sbjct:    87 NTLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 143

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
             ++L   Q T  S+G AF++++ + +A  A+ + NG HK  GSS P+ VK+A
Sbjct:   144 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 192

 Score = 123 (48.4 bits), Expect = 7.5e-05, P = 7.5e-05
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL+I  +P+    +++ + F  FGR+++++V VD+ TG+S+   F+ ++  + A+ AI 
Sbjct:   114 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 173

Query:   409 MMNG 412
               NG
Sbjct:   174 SFNG 177

 Score = 119 (46.9 bits), Expect = 0.00021, P = 0.00021
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ     EL + F + G V SAK+  DK  G S  +GFV+Y +   A+ AI  
Sbjct:    29 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 88

Query:   410 MNG 412
             +NG
Sbjct:    89 LNG 91

 Score = 95 (38.5 bits), Expect = 7.9e-20, Sum P(2) = 7.9e-20
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             +FIY++ Q+  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +
Sbjct:   254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313

Query:   411 NG 412
             NG
Sbjct:   314 NG 315


>UNIPROTKB|F1N9I5 [details] [associations]
            symbol:ELAVL1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
            "positive regulation of translation" evidence=IEA] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
            EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
            Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
        Length = 326

 Score = 197 (74.4 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 52/171 (30%), Positives = 96/171 (56%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             R  L V  +P++MT+ +L ++F     V+   +I+DK    S    FV   + ++A++A+
Sbjct:    19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78

Query:    73 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     S  ++V YA    E ++   L+I  LP+++++ +V  +FS +G I + 
Sbjct:    79 NTLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRSMTQKDVEDMFSRFGRIINS 135

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
             ++L   Q T  S+G AF++++ + +A  A+   NG HK  GSS P+ VK+A
Sbjct:   136 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITNFNG-HKPPGSSEPITVKFA 184

 Score = 123 (48.4 bits), Expect = 7.1e-05, P = 7.1e-05
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL+I  +P+    +++ + F  FGR+++++V VD+ TG+S+   F+ ++  + A+ AI 
Sbjct:   106 ANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165

Query:   409 MMNG 412
               NG
Sbjct:   166 NFNG 169

 Score = 119 (46.9 bits), Expect = 0.00020, P = 0.00020
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ     EL + F + G V SAK+  DK  G S  +GFV+Y +   A+ AI  
Sbjct:    21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80

Query:   410 MNG 412
             +NG
Sbjct:    81 LNG 83

 Score = 95 (38.5 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             +FIY++ Q+  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +
Sbjct:   246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305

Query:   411 NG 412
             NG
Sbjct:   306 NG 307


>UNIPROTKB|B4DVB8 [details] [associations]
            symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
            UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
            IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
            STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
            ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
        Length = 353

 Score = 199 (75.1 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
 Identities = 52/171 (30%), Positives = 96/171 (56%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             R  L V  +P++MT+ +L ++F     V+   +I+DK    S    FV   + ++A++A+
Sbjct:    46 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 105

Query:    73 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     S  ++V YA    E ++   L+I  LP+ +++ +V  +FS +G I + 
Sbjct:   106 NTLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 162

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
             ++L   Q T  S+G AF++++ + +A  A+ + NG HK  GSS P+ VK+A
Sbjct:   163 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 211

 Score = 123 (48.4 bits), Expect = 8.3e-05, P = 8.3e-05
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL+I  +P+    +++ + F  FGR+++++V VD+ TG+S+   F+ ++  + A+ AI 
Sbjct:   133 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 192

Query:   409 MMNG 412
               NG
Sbjct:   193 SFNG 196

 Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ     EL + F + G V SAK+  DK  G S  +GFV+Y +   A+ AI  
Sbjct:    48 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 107

Query:   410 MNG 412
             +NG
Sbjct:   108 LNG 110

 Score = 95 (38.5 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             +FIY++ Q+  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +
Sbjct:   273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332

Query:   411 NG 412
             NG
Sbjct:   333 NG 334


>ZFIN|ZDB-GENE-980526-76 [details] [associations]
            symbol:elavl3 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
            EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
            SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
            InParanoid:Q6P105 Uniprot:Q6P105
        Length = 359

 Score = 185 (70.2 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
 Identities = 46/176 (26%), Positives = 94/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV      +ADKA+
Sbjct:    37 KTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI 96

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  K     +  ++V YA      + +  L++  LPK +S+ ++  LFS YG I   
Sbjct:    97 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITS 153

Query:   132 QIL--RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL  + +   S+G  F++++ + +A  A++ +NG+  + G++ P+ VK+A+   +
Sbjct:   154 RILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208

 Score = 118 (46.6 bits), Expect = 0.00031, P = 0.00031
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +E  + F + G + S K+  DK TG S  +GFV+Y  P  A  AI  
Sbjct:    39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98

Query:   410 MNG 412
             +NG
Sbjct:    99 LNG 101

 Score = 115 (45.5 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
 Identities = 19/65 (29%), Positives = 41/65 (63%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT-GVSKCFGFVSYESPASAQNAI 407
             ANL++  +P+    +++   F  +GR++++++ VD+ T G+S+  GF+ ++    A+ AI
Sbjct:   124 ANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAI 183

Query:   408 AMMNG 412
               +NG
Sbjct:   184 KGLNG 188

 Score = 112 (44.5 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
 Identities = 30/96 (31%), Positives = 42/96 (43%)

Query:   319 SVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELGNAFQAFGRVL 376
             + S  V   +P             + GP GA   +F+Y++  E  +  L   F  FG V 
Sbjct:   244 NASYGVKRFSPITIDSMTSLAGVNLTGPTGAGWCIFVYNLSPEADESVLWQLFGPFGAVT 303

Query:   377 SAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   304 NVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 339

 Score = 99 (39.9 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
 Identities = 24/85 (28%), Positives = 47/85 (55%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA-SRCC-FVICPSRQEADKAVNA 74
             L+V  +PK M++  +  +F ++  +    I+ D+ T   SR   F+    R EA++A+  
Sbjct:   126 LYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKG 185

Query:    75 CHNKKTLPGASSPLQVKYADGELER 99
              + +K L GA+ P+ VK+A+   ++
Sbjct:   186 LNGQKPL-GAAEPITVKFANNPSQK 209

 Score = 81 (33.6 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
 Identities = 23/84 (27%), Positives = 39/84 (46%)

Query:    83 GASSPL-QVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQT 140
             G S P   V   +G  +  +  L +  LP+N+++ E  +LF   G I+  +++R      
Sbjct:    18 GTSLPNGPVISTNGATDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQ 77

Query:   141 SKGCAFLKYETKEQALAALEAING 164
             S G  F+ Y     A  A+  +NG
Sbjct:    78 SLGYGFVNYVDPNDADKAINTLNG 101

 Score = 65 (27.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 14/62 (22%), Positives = 32/62 (51%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L     E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337

Query:   163 NG 164
             NG
Sbjct:   338 NG 339


>MGI|MGI:1100851 [details] [associations]
            symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
            1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
            "AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
            binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
            binding" evidence=ISO] [GO:0045727 "positive regulation of
            translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
            evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
            GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
            HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
            OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
            EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
            UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
            DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
            PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
            KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
            OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
            Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
        Length = 326

 Score = 195 (73.7 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
 Identities = 51/171 (29%), Positives = 96/171 (56%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             R  L V  +P++MT+ +L ++F     V+   +I+DK    S    FV   + ++A++A+
Sbjct:    19 RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78

Query:    73 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             +  +  +     S  ++V YA    E ++   L+I  LP+ +++ +V  +FS +G I + 
Sbjct:    79 STLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 135

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
             ++L   Q T  S+G AF++++ + +A  A+ + NG HK  GSS P+ VK+A
Sbjct:   136 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 184

 Score = 124 (48.7 bits), Expect = 5.5e-05, P = 5.5e-05
 Identities = 25/63 (39%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +EL + F + G V SAK+  DK  G S  +GFV+Y +   A+ AI+ 
Sbjct:    21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80

Query:   410 MNG 412
             +NG
Sbjct:    81 LNG 83

 Score = 123 (48.4 bits), Expect = 7.1e-05, P = 7.1e-05
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL+I  +P+    +++ + F  FGR+++++V VD+ TG+S+   F+ ++  + A+ AI 
Sbjct:   106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165

Query:   409 MMNG 412
               NG
Sbjct:   166 SFNG 169

 Score = 95 (38.5 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             +FIY++ Q+  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +
Sbjct:   246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305

Query:   411 NG 412
             NG
Sbjct:   306 NG 307


>RGD|1308649 [details] [associations]
            symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
            translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
            evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
            [GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
            [GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
            [GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
            HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
            EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
            UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
            Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
            UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
            Uniprot:B5DF91
        Length = 326

 Score = 195 (73.7 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
 Identities = 51/171 (29%), Positives = 96/171 (56%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             R  L V  +P++MT+ +L ++F     V+   +I+DK    S    FV   + ++A++A+
Sbjct:    19 RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78

Query:    73 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             +  +  +     S  ++V YA    E ++   L+I  LP+ +++ +V  +FS +G I + 
Sbjct:    79 STLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 135

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
             ++L   Q T  S+G AF++++ + +A  A+ + NG HK  GSS P+ VK+A
Sbjct:   136 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 184

 Score = 124 (48.7 bits), Expect = 5.5e-05, P = 5.5e-05
 Identities = 25/63 (39%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +EL + F + G V SAK+  DK  G S  +GFV+Y +   A+ AI+ 
Sbjct:    21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80

Query:   410 MNG 412
             +NG
Sbjct:    81 LNG 83

 Score = 123 (48.4 bits), Expect = 7.1e-05, P = 7.1e-05
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL+I  +P+    +++ + F  FGR+++++V VD+ TG+S+   F+ ++  + A+ AI 
Sbjct:   106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165

Query:   409 MMNG 412
               NG
Sbjct:   166 SFNG 169

 Score = 95 (38.5 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             +FIY++ Q+  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +
Sbjct:   246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305

Query:   411 NG 412
             NG
Sbjct:   306 NG 307


>UNIPROTKB|Q5U259 [details] [associations]
            symbol:elavl1-b "ELAV-like protein 1-B" species:8355
            "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
            "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
            evidence=ISS] [GO:0008298 "intracellular mRNA localization"
            evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
            oligomerization" evidence=ISS] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
            GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
            TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
            UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
            GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
            Uniprot:Q5U259
        Length = 326

 Score = 189 (71.6 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
 Identities = 50/171 (29%), Positives = 95/171 (55%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             R  L V  +P++MT+ +L ++F     V+   +I+DK    S    FV   + ++A++A+
Sbjct:    19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAI 78

Query:    73 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     S  ++V +A    E ++   L+I  LP+ +++ +V  +F  +G I + 
Sbjct:    79 NTLNGLRL---QSKTIKVSFARPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINS 135

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
             ++L   Q T  S+G AF++++ + +A  A+ + NG HK  GSS P+ VK+A
Sbjct:   136 RVLV-DQATGLSRGVAFIRFDKRSEAEEAIASFNG-HKPPGSSEPITVKFA 184

 Score = 124 (48.7 bits), Expect = 5.5e-05, P = 5.5e-05
 Identities = 22/64 (34%), Positives = 42/64 (65%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL+I  +P+    +++ + F  FG +++++V VD+ATG+S+   F+ ++  + A+ AIA
Sbjct:   106 ANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIA 165

Query:   409 MMNG 412
               NG
Sbjct:   166 SFNG 169

 Score = 118 (46.6 bits), Expect = 0.00026, P = 0.00026
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ     EL + F + G V SAK+  DK  G S  +GFV+Y +   A+ AI  
Sbjct:    21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINT 80

Query:   410 MNG 412
             +NG
Sbjct:    81 LNG 83

 Score = 95 (38.5 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             +FIY++ Q+  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +
Sbjct:   246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305

Query:   411 NG 412
             NG
Sbjct:   306 NG 307


>UNIPROTKB|B4DFI3 [details] [associations]
            symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
            HOGENOM:HOG000004754 EMBL:AC005331 EMBL:AC006505 EMBL:AC010649
            EMBL:AC123911 UniGene:Hs.655747 HGNC:HGNC:14058 EMBL:AK294109
            IPI:IPI00645373 SMR:B4DFI3 STRING:B4DFI3 Ensembl:ENST00000334293
            Uniprot:B4DFI3
        Length = 320

 Score = 233 (87.1 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 81/232 (34%), Positives = 107/232 (46%)

Query:    87 PLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCA 145
             P+QVK AD E     + KLF+GML K  SE +V  LF  +G I +  +LRG   +SKGCA
Sbjct:     4 PIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCA 63

Query:   146 FLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNAD 205
             F+K+ +  +A AA+ A++G   M G+S  LVVK+ADT+KE               L    
Sbjct:    64 FVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT--- 120

Query:   206 SQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRG 265
                PSL   LP     PY+ Y  QA     LMQ +   +     +  + P V        
Sbjct:   121 ---PSL--TLPFS---PYSAYA-QA-----LMQQQTTVLSTSGSY--LSPGVAFSPCHIQ 164

Query:   266 ASPDLSSNMGPRNYAMPPSGFVGS---GYPAVPGLQYPM--------PYPGG 306
                 +S N  P     P SG       G  AVPGL  P+        P+PGG
Sbjct:   165 QIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGG 216

 Score = 176 (67.0 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
 Identities = 43/127 (33%), Positives = 66/127 (51%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  +E  +L +F+ F ++DE  +++     +  C FV   S  EA  A++A 
Sbjct:    21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHAL 80

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
             H  +T+PGASS L VK+AD + ER   ++   +G L   +    ++  FS Y      Q 
Sbjct:    81 HGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL--GILTPSLTLPFSPYSAYA--QA 136

Query:   134 LRGSQQT 140
             L   Q T
Sbjct:   137 LMQQQTT 143

 Score = 42 (19.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
 Identities = 18/70 (25%), Positives = 26/70 (37%)

Query:   242 PPMQNQPGFHGIIPPVNQGNA----MRGASPDLSSNM--GPRNYAMPPSGFVGSGYPAVP 295
             PP+       G++ P+  G A      G  P L +    G   Y         + +PA  
Sbjct:   188 PPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFS 247

Query:   296 GLQ-YPMPYP 304
             G+Q Y   YP
Sbjct:   248 GVQQYTAMYP 257


>MGI|MGI:109157 [details] [associations]
            symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0007275 "multicellular organismal development" evidence=IEA]
            [GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
            differentiation" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
            ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
            IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
            UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
            PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
            STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
            Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
            UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
            EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
            Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
        Length = 367

 Score = 187 (70.9 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 49/176 (27%), Positives = 94/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV      +ADKA+
Sbjct:    38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  K     +  ++V YA      + +  L++  LPK +S+ E+  LFS YG I   
Sbjct:    98 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+  + G++ P+ VK+A+   +
Sbjct:   155 RILL-DQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208

 Score = 130 (50.8 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
 Identities = 21/64 (32%), Positives = 42/64 (65%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +E+   F  +GR++++++ +D+ATGVS+  GF+ ++    A+ AI 
Sbjct:   125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIK 184

Query:   409 MMNG 412
              +NG
Sbjct:   185 GLNG 188

 Score = 116 (45.9 bits), Expect = 0.00054, P = 0.00054
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ     E  + F + G + S K+  DK TG S  +GFV+Y  P  A  AI  
Sbjct:    40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99

Query:   410 MNG 412
             +NG
Sbjct:   100 LNG 102

 Score = 106 (42.4 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
 Identities = 24/84 (28%), Positives = 48/84 (57%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK M++ ++  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             + +K L GA+ P+ VK+A+   ++
Sbjct:   187 NGQKPL-GAAEPITVKFANNPSQK 209

 Score = 101 (40.6 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 33/105 (31%), Positives = 46/105 (43%)

Query:   313 LNNSPGSVSPA--VANSNPXXXXXXXXXXXXQIEG-PPGAN--LFIYHIPQEFGDQELGN 367
             LN + G  SP   +A  +P             + G   GA   +F+Y++  E  +  L  
Sbjct:   243 LNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQ 302

Query:   368 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
              F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   303 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347

 Score = 81 (33.6 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
 Identities = 19/72 (26%), Positives = 35/72 (48%)

Query:    94 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETK 152
             +G  +  +  L +  LP+N+++ E  +LF   G I+  +++R      S G  F+ Y   
Sbjct:    31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90

Query:   153 EQALAALEAING 164
               A  A+  +NG
Sbjct:    91 NDADKAINTLNG 102

 Score = 65 (27.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
 Identities = 14/62 (22%), Positives = 32/62 (51%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L     E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query:   163 NG 164
             NG
Sbjct:   346 NG 347


>RGD|628892 [details] [associations]
            symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
            EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
            SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
            KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
            Genevestigator:Q76IJ9 Uniprot:Q76IJ9
        Length = 367

 Score = 187 (70.9 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 49/176 (27%), Positives = 94/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV      +ADKA+
Sbjct:    38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  K     +  ++V YA      + +  L++  LPK +S+ E+  LFS YG I   
Sbjct:    98 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+  + G++ P+ VK+A+   +
Sbjct:   155 RILL-DQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208

 Score = 130 (50.8 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
 Identities = 21/64 (32%), Positives = 42/64 (65%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +E+   F  +GR++++++ +D+ATGVS+  GF+ ++    A+ AI 
Sbjct:   125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIK 184

Query:   409 MMNG 412
              +NG
Sbjct:   185 GLNG 188

 Score = 116 (45.9 bits), Expect = 0.00054, P = 0.00054
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ     E  + F + G + S K+  DK TG S  +GFV+Y  P  A  AI  
Sbjct:    40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99

Query:   410 MNG 412
             +NG
Sbjct:   100 LNG 102

 Score = 106 (42.4 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
 Identities = 24/84 (28%), Positives = 48/84 (57%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK M++ ++  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             + +K L GA+ P+ VK+A+   ++
Sbjct:   187 NGQKPL-GAAEPITVKFANNPSQK 209

 Score = 101 (40.6 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 33/105 (31%), Positives = 46/105 (43%)

Query:   313 LNNSPGSVSPA--VANSNPXXXXXXXXXXXXQIEG-PPGAN--LFIYHIPQEFGDQELGN 367
             LN + G  SP   +A  +P             + G   GA   +F+Y++  E  +  L  
Sbjct:   243 LNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQ 302

Query:   368 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
              F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   303 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347

 Score = 81 (33.6 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
 Identities = 19/72 (26%), Positives = 35/72 (48%)

Query:    94 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETK 152
             +G  +  +  L +  LP+N+++ E  +LF   G I+  +++R      S G  F+ Y   
Sbjct:    31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90

Query:   153 EQALAALEAING 164
               A  A+  +NG
Sbjct:    91 NDADKAINTLNG 102

 Score = 65 (27.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
 Identities = 14/62 (22%), Positives = 32/62 (51%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L     E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query:   163 NG 164
             NG
Sbjct:   346 NG 347


>UNIPROTKB|Q12926 [details] [associations]
            symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=TAS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
            EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
            RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
            UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
            STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
            PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
            Ensembl:ENST00000380110 Ensembl:ENST00000380117
            Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
            KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
            GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
            neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
            OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
            ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
            Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
        Length = 359

 Score = 182 (69.1 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
 Identities = 48/176 (27%), Positives = 96/176 (54%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +L ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:    98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   155 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 208

 Score = 128 (50.1 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TG+S+  GF+ ++    A+ AI 
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184

Query:   409 MMNG 412
              +NG
Sbjct:   185 GLNG 188

 Score = 124 (48.7 bits), Expect = 6.6e-05, P = 6.6e-05
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +EL + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99

Query:   410 MNG 412
             +NG
Sbjct:   100 LNG 102

 Score = 114 (45.2 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             + +K  PGA+ P+ VK+A+   ++
Sbjct:   187 NGQKP-PGATEPITVKFANNPSQK 209

 Score = 105 (42.0 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
 Identities = 35/120 (29%), Positives = 51/120 (42%)

Query:   295 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 352
             P  +YP P        R L+N   +++  V   +P             I G PG    +F
Sbjct:   222 PNRRYPGPLAQQAQRFR-LDNLL-NMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIF 279

Query:   353 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             +Y++  +  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   280 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339

 Score = 88 (36.0 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
 Identities = 25/94 (26%), Positives = 44/94 (46%)

Query:    73 NACHNKKTLPG-ASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +   T+    SSP+      G  E  +  L +  LP+N+++ E+ +LF   G I+  
Sbjct:    13 NTANGPTTINNNCSSPVD----SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESC 68

Query:   132 QILRGS-QQTSKGCAFLKYETKEQALAALEAING 164
             +++R      S G  F+ Y   + A  A+  +NG
Sbjct:    69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102

 Score = 63 (27.2 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
 Identities = 13/62 (20%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  +F  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query:   163 NG 164
             NG
Sbjct:   338 NG 339


>MGI|MGI:1100887 [details] [associations]
            symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
            IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
            ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
            PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
            Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
            InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
            GermOnline:ENSMUSG00000008489 Uniprot:Q60899
        Length = 360

 Score = 182 (69.1 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
 Identities = 48/176 (27%), Positives = 96/176 (54%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +L ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:    98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   155 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 208

 Score = 128 (50.1 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TG+S+  GF+ ++    A+ AI 
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184

Query:   409 MMNG 412
              +NG
Sbjct:   185 GLNG 188

 Score = 124 (48.7 bits), Expect = 6.6e-05, P = 6.6e-05
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +EL + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99

Query:   410 MNG 412
             +NG
Sbjct:   100 LNG 102

 Score = 114 (45.2 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             + +K  PGA+ P+ VK+A+   ++
Sbjct:   187 NGQKP-PGATEPITVKFANNPSQK 209

 Score = 105 (42.0 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
 Identities = 34/120 (28%), Positives = 48/120 (40%)

Query:   295 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 352
             P  +YP P        R L+N         +  +P             I G PG    +F
Sbjct:   222 PNRRYPGPLAQQAQRFR-LDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIF 280

Query:   353 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             +Y++  +  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   281 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 340

 Score = 87 (35.7 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
 Identities = 23/81 (28%), Positives = 40/81 (49%)

Query:    85 SSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKG 143
             SSP+      G  E  +  L +  LP+N+++ E+ +LF   G I+  +++R      S G
Sbjct:    26 SSPVD----SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81

Query:   144 CAFLKYETKEQALAALEAING 164
               F+ Y   + A  A+  +NG
Sbjct:    82 YGFVNYIDPKDAEKAINTLNG 102

 Score = 63 (27.2 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
 Identities = 13/62 (20%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  +F  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338

Query:   163 NG 164
             NG
Sbjct:   339 NG 340


>UNIPROTKB|F1PVV1 [details] [associations]
            symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
            Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
        Length = 367

 Score = 185 (70.2 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
 Identities = 49/176 (27%), Positives = 94/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV      +ADKA+
Sbjct:    38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  K     +  ++V YA      + +  L++  LPK +S+ E+  LFS YG I   
Sbjct:    98 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+  + G++ P+ VK+A+   +
Sbjct:   155 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208

 Score = 129 (50.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +E+   F  +GR++++++ VD+ TGVS+  GF+ ++    A+ AI 
Sbjct:   125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184

Query:   409 MMNG 412
              +NG
Sbjct:   185 GLNG 188

 Score = 116 (45.9 bits), Expect = 0.00054, P = 0.00054
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ     E  + F + G + S K+  DK TG S  +GFV+Y  P  A  AI  
Sbjct:    40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99

Query:   410 MNG 412
             +NG
Sbjct:   100 LNG 102

 Score = 106 (42.4 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
 Identities = 24/84 (28%), Positives = 48/84 (57%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK M++ ++  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             + +K L GA+ P+ VK+A+   ++
Sbjct:   187 NGQKPL-GAAEPITVKFANNPSQK 209

 Score = 101 (40.6 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
 Identities = 33/105 (31%), Positives = 46/105 (43%)

Query:   313 LNNSPGSVSPA--VANSNPXXXXXXXXXXXXQIEG-PPGAN--LFIYHIPQEFGDQELGN 367
             LN + G  SP   +A  +P             + G   GA   +F+Y++  E  +  L  
Sbjct:   243 LNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQ 302

Query:   368 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
              F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   303 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347

 Score = 81 (33.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 19/72 (26%), Positives = 35/72 (48%)

Query:    94 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETK 152
             +G  +  +  L +  LP+N+++ E  +LF   G I+  +++R      S G  F+ Y   
Sbjct:    31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90

Query:   153 EQALAALEAING 164
               A  A+  +NG
Sbjct:    91 NDADKAINTLNG 102

 Score = 65 (27.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
 Identities = 14/62 (22%), Positives = 32/62 (51%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L     E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query:   163 NG 164
             NG
Sbjct:   346 NG 347


>UNIPROTKB|Q14576 [details] [associations]
            symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
            "nervous system development" evidence=IEA] [GO:0030154 "cell
            differentiation" evidence=IEA] [GO:0017091 "AU-rich element
            binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
            EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
            RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
            SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
            PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
            Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
            KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
            GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
            neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
            PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
            ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
            Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
        Length = 367

 Score = 185 (70.2 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
 Identities = 49/176 (27%), Positives = 94/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV      +ADKA+
Sbjct:    38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  K     +  ++V YA      + +  L++  LPK +S+ E+  LFS YG I   
Sbjct:    98 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+  + G++ P+ VK+A+   +
Sbjct:   155 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208

 Score = 129 (50.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +E+   F  +GR++++++ VD+ TGVS+  GF+ ++    A+ AI 
Sbjct:   125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184

Query:   409 MMNG 412
              +NG
Sbjct:   185 GLNG 188

 Score = 116 (45.9 bits), Expect = 0.00054, P = 0.00054
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ     E  + F + G + S K+  DK TG S  +GFV+Y  P  A  AI  
Sbjct:    40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99

Query:   410 MNG 412
             +NG
Sbjct:   100 LNG 102

 Score = 106 (42.4 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
 Identities = 24/84 (28%), Positives = 48/84 (57%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK M++ ++  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             + +K L GA+ P+ VK+A+   ++
Sbjct:   187 NGQKPL-GAAEPITVKFANNPSQK 209

 Score = 101 (40.6 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
 Identities = 33/105 (31%), Positives = 46/105 (43%)

Query:   313 LNNSPGSVSPA--VANSNPXXXXXXXXXXXXQIEG-PPGAN--LFIYHIPQEFGDQELGN 367
             LN + G  SP   +A  +P             + G   GA   +F+Y++  E  +  L  
Sbjct:   243 LNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQ 302

Query:   368 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
              F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   303 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347

 Score = 81 (33.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 19/72 (26%), Positives = 35/72 (48%)

Query:    94 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETK 152
             +G  +  +  L +  LP+N+++ E  +LF   G I+  +++R      S G  F+ Y   
Sbjct:    31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90

Query:   153 EQALAALEAING 164
               A  A+  +NG
Sbjct:    91 NDADKAINTLNG 102

 Score = 65 (27.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
 Identities = 14/62 (22%), Positives = 32/62 (51%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L     E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query:   163 NG 164
             NG
Sbjct:   346 NG 347


>UNIPROTKB|B1AM49 [details] [associations]
            symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
            UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
            Ensembl:ENST00000359598 Uniprot:B1AM49
        Length = 387

 Score = 182 (69.1 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 48/176 (27%), Positives = 96/176 (54%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +L ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    66 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 125

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:   126 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 182

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   183 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 236

 Score = 128 (50.1 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TG+S+  GF+ ++    A+ AI 
Sbjct:   153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 212

Query:   409 MMNG 412
              +NG
Sbjct:   213 GLNG 216

 Score = 124 (48.7 bits), Expect = 7.6e-05, P = 7.6e-05
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +EL + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127

Query:   410 MNG 412
             +NG
Sbjct:   128 LNG 130

 Score = 114 (45.2 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 214

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             + +K  PGA+ P+ VK+A+   ++
Sbjct:   215 NGQKP-PGATEPITVKFANNPSQK 237

 Score = 105 (42.0 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 35/120 (29%), Positives = 51/120 (42%)

Query:   295 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 352
             P  +YP P        R L+N   +++  V   +P             I G PG    +F
Sbjct:   250 PNRRYPGPLAQQAQRFR-LDNLL-NMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIF 307

Query:   353 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             +Y++  +  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   308 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 367

 Score = 88 (36.0 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
 Identities = 25/94 (26%), Positives = 44/94 (46%)

Query:    73 NACHNKKTLPG-ASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +   T+    SSP+      G  E  +  L +  LP+N+++ E+ +LF   G I+  
Sbjct:    41 NTANGPTTINNNCSSPVD----SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESC 96

Query:   132 QILRGS-QQTSKGCAFLKYETKEQALAALEAING 164
             +++R      S G  F+ Y   + A  A+  +NG
Sbjct:    97 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 130

 Score = 63 (27.2 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
 Identities = 13/62 (20%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  +F  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365

Query:   163 NG 164
             NG
Sbjct:   366 NG 367


>UNIPROTKB|G3N063 [details] [associations]
            symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
            EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
        Length = 388

 Score = 182 (69.1 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
 Identities = 48/176 (27%), Positives = 96/176 (54%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +L ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 126

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:   127 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 183

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   184 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 237

 Score = 128 (50.1 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TG+S+  GF+ ++    A+ AI 
Sbjct:   154 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213

Query:   409 MMNG 412
              +NG
Sbjct:   214 GLNG 217

 Score = 124 (48.7 bits), Expect = 7.6e-05, P = 7.6e-05
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +EL + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128

Query:   410 MNG 412
             +NG
Sbjct:   129 LNG 131

 Score = 114 (45.2 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             + +K  PGA+ P+ VK+A+   ++
Sbjct:   216 NGQKP-PGATEPITVKFANNPSQK 238

 Score = 105 (42.0 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
 Identities = 34/120 (28%), Positives = 48/120 (40%)

Query:   295 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 352
             P  +YP P        R L+N         +  +P             I G PG    +F
Sbjct:   251 PNRRYPGPLAQQAQRFR-LDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIF 309

Query:   353 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             +Y++  +  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   310 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 369

 Score = 88 (36.0 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
 Identities = 25/94 (26%), Positives = 44/94 (46%)

Query:    73 NACHNKKTLPG-ASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +   T+    SSP+      G  E  +  L +  LP+N+++ E+ +LF   G I+  
Sbjct:    42 NTANGPTTINNNCSSPVD----SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESC 97

Query:   132 QILRGS-QQTSKGCAFLKYETKEQALAALEAING 164
             +++R      S G  F+ Y   + A  A+  +NG
Sbjct:    98 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 131

 Score = 68 (29.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 19/82 (23%), Positives = 42/82 (51%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  +F  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367

Query:   163 NGKHKMEGSSVPLVVKWADTEK 184
             NG +++ G  V  V K   T K
Sbjct:   368 NG-YRL-GDRVLQVFKTNKTHK 387


>UNIPROTKB|E2RI94 [details] [associations]
            symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
            EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
            Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
        Length = 388

 Score = 182 (69.1 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
 Identities = 48/176 (27%), Positives = 96/176 (54%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +L ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 126

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:   127 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 183

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   184 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 237

 Score = 128 (50.1 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TG+S+  GF+ ++    A+ AI 
Sbjct:   154 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213

Query:   409 MMNG 412
              +NG
Sbjct:   214 GLNG 217

 Score = 124 (48.7 bits), Expect = 7.6e-05, P = 7.6e-05
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +EL + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128

Query:   410 MNG 412
             +NG
Sbjct:   129 LNG 131

 Score = 114 (45.2 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             + +K  PGA+ P+ VK+A+   ++
Sbjct:   216 NGQKP-PGATEPITVKFANNPSQK 238

 Score = 105 (42.0 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
 Identities = 35/120 (29%), Positives = 51/120 (42%)

Query:   295 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 352
             P  +YP P        R L+N   +++  V   +P             I G PG    +F
Sbjct:   251 PNRRYPGPLAQQAQRFR-LDNLL-NMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIF 308

Query:   353 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             +Y++  +  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   309 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 368

 Score = 88 (36.0 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
 Identities = 25/94 (26%), Positives = 44/94 (46%)

Query:    73 NACHNKKTLPG-ASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +   T+    SSP+      G  E  +  L +  LP+N+++ E+ +LF   G I+  
Sbjct:    42 NTANGPTTINNNCSSPVD----SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESC 97

Query:   132 QILRGS-QQTSKGCAFLKYETKEQALAALEAING 164
             +++R      S G  F+ Y   + A  A+  +NG
Sbjct:    98 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 131

 Score = 63 (27.2 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
 Identities = 13/62 (20%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  +F  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366

Query:   163 NG 164
             NG
Sbjct:   367 NG 368


>UNIPROTKB|Q6GLB5 [details] [associations]
            symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
            (Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
            [GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
            binding" evidence=ISS] [GO:0008298 "intracellular mRNA
            localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
            [GO:0051259 "protein oligomerization" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
            HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
            OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
            RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
            SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
            Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
        Length = 326

 Score = 186 (70.5 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
 Identities = 50/171 (29%), Positives = 94/171 (54%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             R  L V  +P++MT+ +L ++F     V+   +I+DK    S    FV   + ++A++A+
Sbjct:    19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAI 78

Query:    73 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     S  ++V  A    E ++   L+I  LP+ +++ +V  +F  +G I + 
Sbjct:    79 NTLNGLRL---QSKTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINS 135

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
             ++L   Q T  S+G AF++++ + +A  A+ + NG HK  GSS P+ VK+A
Sbjct:   136 RVLV-DQATGLSRGVAFIRFDKRSEAEEAIASFNG-HKPPGSSEPITVKFA 184

 Score = 129 (50.5 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 23/64 (35%), Positives = 43/64 (67%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL+I  +P+    +++ + F  FGR+++++V VD+ATG+S+   F+ ++  + A+ AIA
Sbjct:   106 ANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIA 165

Query:   409 MMNG 412
               NG
Sbjct:   166 SFNG 169

 Score = 118 (46.6 bits), Expect = 0.00026, P = 0.00026
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ     EL + F + G V SAK+  DK  G S  +GFV+Y +   A+ AI  
Sbjct:    21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINT 80

Query:   410 MNG 412
             +NG
Sbjct:    81 LNG 83

 Score = 95 (38.5 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             +FIY++ Q+  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +
Sbjct:   246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305

Query:   411 NG 412
             NG
Sbjct:   306 NG 307


>UNIPROTKB|F1N4V6 [details] [associations]
            symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
            IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
        Length = 368

 Score = 185 (70.2 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
 Identities = 49/176 (27%), Positives = 94/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV      +ADKA+
Sbjct:    38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  K     +  ++V YA      + +  L++  LPK +S+ E+  LFS YG I   
Sbjct:    98 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+  + G++ P+ VK+A+   +
Sbjct:   155 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208

 Score = 129 (50.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +E+   F  +GR++++++ VD+ TGVS+  GF+ ++    A+ AI 
Sbjct:   125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184

Query:   409 MMNG 412
              +NG
Sbjct:   185 GLNG 188

 Score = 116 (45.9 bits), Expect = 0.00054, P = 0.00054
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ     E  + F + G + S K+  DK TG S  +GFV+Y  P  A  AI  
Sbjct:    40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99

Query:   410 MNG 412
             +NG
Sbjct:   100 LNG 102

 Score = 106 (42.4 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
 Identities = 24/84 (28%), Positives = 48/84 (57%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK M++ ++  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             + +K L GA+ P+ VK+A+   ++
Sbjct:   187 NGQKPL-GAAEPITVKFANNPSQK 209

 Score = 99 (39.9 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
 Identities = 26/70 (37%), Positives = 35/70 (50%)

Query:   345 GPPGAN--LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPAS 402
             G  GA   +F+Y++  E  +  L   F  FG V + KV  D  T   K FGFV+  +   
Sbjct:   279 GAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDE 338

Query:   403 AQNAIAMMNG 412
             A  AIA +NG
Sbjct:   339 AAMAIASLNG 348

 Score = 81 (33.6 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 19/72 (26%), Positives = 35/72 (48%)

Query:    94 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETK 152
             +G  +  +  L +  LP+N+++ E  +LF   G I+  +++R      S G  F+ Y   
Sbjct:    31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90

Query:   153 EQALAALEAING 164
               A  A+  +NG
Sbjct:    91 NDADKAINTLNG 102

 Score = 65 (27.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
 Identities = 14/62 (22%), Positives = 32/62 (51%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L     E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346

Query:   163 NG 164
             NG
Sbjct:   347 NG 348


>UNIPROTKB|D4A7H6 [details] [associations]
            symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
            SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
            Uniprot:D4A7H6
        Length = 346

 Score = 182 (69.1 bits), Expect = 6.0e-18, Sum P(2) = 6.0e-18
 Identities = 48/176 (27%), Positives = 96/176 (54%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +L ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:    98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   155 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 208

 Score = 128 (50.1 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TG+S+  GF+ ++    A+ AI 
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184

Query:   409 MMNG 412
              +NG
Sbjct:   185 GLNG 188

 Score = 124 (48.7 bits), Expect = 6.2e-05, P = 6.2e-05
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +EL + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99

Query:   410 MNG 412
             +NG
Sbjct:   100 LNG 102

 Score = 114 (45.2 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             + +K  PGA+ P+ VK+A+   ++
Sbjct:   187 NGQKP-PGATEPITVKFANNPSQK 209

 Score = 99 (39.9 bits), Expect = 6.0e-18, Sum P(2) = 6.0e-18
 Identities = 26/72 (36%), Positives = 36/72 (50%)

Query:   343 IEGPPGAN--LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESP 400
             I G PG    +F+Y++  +  +  L   F  FG V + KV  D  T   K FGFV+  + 
Sbjct:   255 IPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 314

Query:   401 ASAQNAIAMMNG 412
               A  AIA +NG
Sbjct:   315 DEAAMAIASLNG 326

 Score = 87 (35.7 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
 Identities = 23/81 (28%), Positives = 40/81 (49%)

Query:    85 SSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKG 143
             SSP+      G  E  +  L +  LP+N+++ E+ +LF   G I+  +++R      S G
Sbjct:    26 SSPVD----SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81

Query:   144 CAFLKYETKEQALAALEAING 164
               F+ Y   + A  A+  +NG
Sbjct:    82 YGFVNYIDPKDAEKAINTLNG 102

 Score = 63 (27.2 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
 Identities = 13/62 (20%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  +F  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324

Query:   163 NG 164
             NG
Sbjct:   325 NG 326


>UNIPROTKB|F1SA16 [details] [associations]
            symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
            Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
        Length = 367

 Score = 185 (70.2 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
 Identities = 49/176 (27%), Positives = 94/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV      +ADKA+
Sbjct:    38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  K     +  ++V YA      + +  L++  LPK +S+ E+  LFS YG I   
Sbjct:    98 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+  + G++ P+ VK+A+   +
Sbjct:   155 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208

 Score = 129 (50.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +E+   F  +GR++++++ VD+ TGVS+  GF+ ++    A+ AI 
Sbjct:   125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184

Query:   409 MMNG 412
              +NG
Sbjct:   185 GLNG 188

 Score = 116 (45.9 bits), Expect = 0.00054, P = 0.00054
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ     E  + F + G + S K+  DK TG S  +GFV+Y  P  A  AI  
Sbjct:    40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99

Query:   410 MNG 412
             +NG
Sbjct:   100 LNG 102

 Score = 106 (42.4 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 24/84 (28%), Positives = 48/84 (57%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK M++ ++  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             + +K L GA+ P+ VK+A+   ++
Sbjct:   187 NGQKPL-GAAEPITVKFANNPSQK 209

 Score = 96 (38.9 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
 Identities = 23/62 (37%), Positives = 32/62 (51%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             +F+Y++  E  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +
Sbjct:   286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query:   411 NG 412
             NG
Sbjct:   346 NG 347

 Score = 81 (33.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 19/72 (26%), Positives = 35/72 (48%)

Query:    94 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETK 152
             +G  +  +  L +  LP+N+++ E  +LF   G I+  +++R      S G  F+ Y   
Sbjct:    31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90

Query:   153 EQALAALEAING 164
               A  A+  +NG
Sbjct:    91 NDADKAINTLNG 102

 Score = 65 (27.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
 Identities = 14/62 (22%), Positives = 32/62 (51%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L     E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query:   163 NG 164
             NG
Sbjct:   346 NG 347


>UNIPROTKB|K7EJK3 [details] [associations]
            symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
            EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000589229 Uniprot:K7EJK3
        Length = 162

 Score = 219 (82.2 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 51/109 (46%), Positives = 68/109 (62%)

Query:    87 PLQVKYADGE-------LER---LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG 136
             P+QVK AD E       L +    + KLF+GML K  SE +V  LF  +G I++  ILRG
Sbjct:     4 PIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRG 63

Query:   137 SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
                 SKGCAF+KY +  +A AA+ A++G   M G+S  LVVK+ADT+KE
Sbjct:    64 PDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 112

 Score = 166 (63.5 bits), Expect = 9.1e-12, P = 9.1e-12
 Identities = 34/89 (38%), Positives = 51/89 (57%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75
             KLFVG + K  +E  +  +F+ F  ++E  I++     +  C FV   S  EA  A+NA 
Sbjct:    30 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 89

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             H  +T+PGASS L VK+AD + ER   ++
Sbjct:    90 HGSQTMPGASSSLVVKFADTDKERTMRRM 118


>RGD|628611 [details] [associations]
            symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
            UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
            PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
            ArrayExpress:Q8CH84 Genevestigator:Q8CH84
            GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
        Length = 359

 Score = 175 (66.7 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
 Identities = 47/176 (26%), Positives = 95/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L    +P++MT+ +L ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    38 KTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:    98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   155 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 208

 Score = 128 (50.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TG+S+  GF+ ++    A+ AI 
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184

Query:   409 MMNG 412
              +NG
Sbjct:   185 GLNG 188

 Score = 118 (46.6 bits), Expect = 0.00031, P = 0.00031
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL   ++PQ    +EL + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99

Query:   410 MNG 412
             +NG
Sbjct:   100 LNG 102

 Score = 114 (45.2 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             + +K  PGA+ P+ VK+A+   ++
Sbjct:   187 NGQKP-PGATEPITVKFANNPSQK 209

 Score = 105 (42.0 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
 Identities = 35/120 (29%), Positives = 51/120 (42%)

Query:   295 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 352
             P  +YP P        R L+N   +++  V   +P             I G PG    +F
Sbjct:   222 PNRRYPGPLAQQAQRFR-LDNLL-NMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIF 279

Query:   353 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             +Y++  +  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   280 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339

 Score = 81 (33.6 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 23/81 (28%), Positives = 39/81 (48%)

Query:    85 SSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKG 143
             SSP+      G  E  +  L    LP+N+++ E+ +LF   G I+  +++R      S G
Sbjct:    26 SSPVD----SGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81

Query:   144 CAFLKYETKEQALAALEAING 164
               F+ Y   + A  A+  +NG
Sbjct:    82 YGFVNYIDPKDAEKAINTLNG 102

 Score = 63 (27.2 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
 Identities = 13/62 (20%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  +F  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query:   163 NG 164
             NG
Sbjct:   338 NG 339


>UNIPROTKB|Q8CH84 [details] [associations]
            symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
            UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
            PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
            ArrayExpress:Q8CH84 Genevestigator:Q8CH84
            GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
        Length = 359

 Score = 175 (66.7 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
 Identities = 47/176 (26%), Positives = 95/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L    +P++MT+ +L ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    38 KTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:    98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   155 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 208

 Score = 128 (50.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TG+S+  GF+ ++    A+ AI 
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184

Query:   409 MMNG 412
              +NG
Sbjct:   185 GLNG 188

 Score = 118 (46.6 bits), Expect = 0.00031, P = 0.00031
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL   ++PQ    +EL + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99

Query:   410 MNG 412
             +NG
Sbjct:   100 LNG 102

 Score = 114 (45.2 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             + +K  PGA+ P+ VK+A+   ++
Sbjct:   187 NGQKP-PGATEPITVKFANNPSQK 209

 Score = 105 (42.0 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
 Identities = 35/120 (29%), Positives = 51/120 (42%)

Query:   295 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 352
             P  +YP P        R L+N   +++  V   +P             I G PG    +F
Sbjct:   222 PNRRYPGPLAQQAQRFR-LDNLL-NMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIF 279

Query:   353 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             +Y++  +  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   280 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339

 Score = 81 (33.6 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 23/81 (28%), Positives = 39/81 (48%)

Query:    85 SSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKG 143
             SSP+      G  E  +  L    LP+N+++ E+ +LF   G I+  +++R      S G
Sbjct:    26 SSPVD----SGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81

Query:   144 CAFLKYETKEQALAALEAING 164
               F+ Y   + A  A+  +NG
Sbjct:    82 YGFVNYIDPKDAEKAINTLNG 102

 Score = 63 (27.2 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
 Identities = 13/62 (20%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  +F  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query:   163 NG 164
             NG
Sbjct:   338 NG 339


>FB|FBgn0038345 [details] [associations]
            symbol:CG5213 species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
            GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
            UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
            GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
            FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
            OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
        Length = 251

 Score = 218 (81.8 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 58/176 (32%), Positives = 94/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC--FVICPSRQEADKA 71
             +  L +  +P+ MTE++L  +F +F  + +  II+ + T  S CC  FV   S ++A  A
Sbjct:    40 KTNLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGIS-CCYGFVDYVSERQAAAA 98

Query:    72 VNACHNKKTLPGASSPLQVKYA-DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
             VN     +T       L+V +A   E E     L++G LP  + E +V  LF+ YG I D
Sbjct:    99 VNGMDGYET---RGKRLKVAFARPSEYESTSSSLYVGNLPTYMDEKKVRELFATYGNIVD 155

Query:   131 LQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             + +LR      S+G AFL++E    A  A   ++ ++ +EG+S PL VK+ + EK+
Sbjct:   156 VNLLRHKFNNRSRGVAFLQFELVRDAEVAKYGMD-RYMIEGASRPLTVKFVEREKK 210

 Score = 126 (49.4 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ+  + EL   F  FG +  AK+   + TG+S C+GFV Y S   A  A+  
Sbjct:    42 NLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAVNG 101

Query:   410 MNG 412
             M+G
Sbjct:   102 MDG 104


>FB|FBgn0260400 [details] [associations]
            symbol:elav "embryonic lethal abnormal vision" species:7227
            "Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
            [GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
            system development" evidence=IMP] [GO:0016070 "RNA metabolic
            process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
            [GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
            "poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
            regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
            "RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
            EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
            GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
            GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
            PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
            RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
            ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
            MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
            EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
            KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
            InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
            NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
        Length = 483

 Score = 163 (62.4 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
 Identities = 47/186 (25%), Positives = 98/186 (52%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT--------------RASRCCF 59
             R  L V  +P+ MTE ++ ++F     ++ V +I+DK+               ++    F
Sbjct:   148 RTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGF 207

Query:    60 VICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEV 118
             V     Q+A++AVN  +  +     +  ++V +A    + ++   L++  LPK +++ E+
Sbjct:   208 VNYVRPQDAEQAVNVLNGLRL---QNKTIKVSFARPSSDAIKGANLYVSGLPKTMTQQEL 264

Query:   119 SALFSIYGTIKDLQILR--GSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 176
              A+F+ +G I   +IL+  G+   +KG  F++++ +E+A  A+ A+NG      +  P+V
Sbjct:   265 EAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPSSCTD-PIV 323

Query:   177 VKWADT 182
             VK+++T
Sbjct:   324 VKFSNT 329

 Score = 119 (46.9 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
 Identities = 42/158 (26%), Positives = 60/158 (37%)

Query:   262 AMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYP--GGMLGHRPLNNSPGS 319
             A+ G +P   ++     ++  P        P +P    P      GG + H P+N     
Sbjct:   309 ALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLVRRIGGAM-HTPVNKGLAR 367

Query:   320 VSPAVANSN----PXXXXXXXXXXXXQIEGPPGAN-LFIYHIPQEFGDQELGNAFQAFGR 374
              SP   +      P               GP GA  +FIY++  E  +  L   F  FG 
Sbjct:   368 FSPMAGDMLDVMLPNGLGAAAAAATTLASGPGGAYPIFIYNLAPETEEAALWQLFGPFGA 427

Query:   375 VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             V S K+  D  T   K +GFVS  +   A  AI  +NG
Sbjct:   428 VQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNG 465


>UNIPROTKB|A2VDK5 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
            OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
            IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
            STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
            KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
        Length = 366

 Score = 179 (68.1 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
 Identities = 47/176 (26%), Positives = 95/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:   105 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 161

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   162 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 215

 Score = 129 (50.5 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 22/64 (34%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TGVS+  GF+ ++    A+ AI 
Sbjct:   132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191

Query:   409 MMNG 412
              +NG
Sbjct:   192 GLNG 195

 Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +E  + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106

Query:   410 MNG 412
             +NG
Sbjct:   107 LNG 109

 Score = 108 (43.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             + +K   GA+ P+ VK+A+   ++    L
Sbjct:   194 NGQKP-SGATEPITVKFANNPSQKSSQAL 221

 Score = 94 (38.1 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
 Identities = 34/120 (28%), Positives = 50/120 (41%)

Query:   295 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 352
             P  +YP P        R L+N   +++  V   +P             I G  G    +F
Sbjct:   229 PNRRYPGPLHHQAQRFR-LDNLL-NMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIF 286

Query:   353 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             +Y++  +  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   287 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 346

 Score = 65 (27.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 14/62 (22%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344

Query:   163 NG 164
             NG
Sbjct:   345 NG 346


>UNIPROTKB|J9PAL3 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
            RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
            Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
            Uniprot:J9PAL3
        Length = 366

 Score = 179 (68.1 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
 Identities = 47/176 (26%), Positives = 95/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:   105 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 161

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   162 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 215

 Score = 129 (50.5 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 22/64 (34%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TGVS+  GF+ ++    A+ AI 
Sbjct:   132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191

Query:   409 MMNG 412
              +NG
Sbjct:   192 GLNG 195

 Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +E  + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106

Query:   410 MNG 412
             +NG
Sbjct:   107 LNG 109

 Score = 108 (43.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             + +K   GA+ P+ VK+A+   ++    L
Sbjct:   194 NGQKP-SGATEPITVKFANNPSQKSSQAL 221

 Score = 94 (38.1 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
 Identities = 34/120 (28%), Positives = 50/120 (41%)

Query:   295 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 352
             P  +YP P        R L+N   +++  V   +P             I G  G    +F
Sbjct:   229 PNRRYPGPLHHQAQRFR-LDNLL-NMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIF 286

Query:   353 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             +Y++  +  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   287 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 346

 Score = 65 (27.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 14/62 (22%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344

Query:   163 NG 164
             NG
Sbjct:   345 NG 346


>UNIPROTKB|F1NLH0 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
            EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
            Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
        Length = 371

 Score = 179 (68.1 bits), Expect = 7.2e-17, Sum P(2) = 7.2e-17
 Identities = 47/176 (26%), Positives = 95/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:   110 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 166

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   167 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 220

 Score = 129 (50.5 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 22/64 (34%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TGVS+  GF+ ++    A+ AI 
Sbjct:   137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196

Query:   409 MMNG 412
              +NG
Sbjct:   197 GLNG 200

 Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +E  + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111

Query:   410 MNG 412
             +NG
Sbjct:   112 LNG 114

 Score = 109 (43.4 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             + +K   GA+ P+ VK+A+   ++    L
Sbjct:   199 NGQKP-SGATEPITVKFANNPSQKTSQAL 226

 Score = 94 (38.1 bits), Expect = 7.2e-17, Sum P(2) = 7.2e-17
 Identities = 34/120 (28%), Positives = 50/120 (41%)

Query:   295 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 352
             P  +YP P        R L+N   +++  V   +P             I G  G    +F
Sbjct:   234 PNRRYPGPLHHQAQRFR-LDNLL-NMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIF 291

Query:   353 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             +Y++  +  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   292 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 351

 Score = 65 (27.9 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
 Identities = 14/62 (22%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349

Query:   163 NG 164
             NG
Sbjct:   350 NG 351


>UNIPROTKB|B1APY9 [details] [associations]
            symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
            protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
            UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
            SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
            Uniprot:B1APY9
        Length = 371

 Score = 179 (68.1 bits), Expect = 7.2e-17, Sum P(2) = 7.2e-17
 Identities = 47/176 (26%), Positives = 95/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:   110 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 166

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   167 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 220

 Score = 129 (50.5 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 22/64 (34%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TGVS+  GF+ ++    A+ AI 
Sbjct:   137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196

Query:   409 MMNG 412
              +NG
Sbjct:   197 GLNG 200

 Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +E  + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111

Query:   410 MNG 412
             +NG
Sbjct:   112 LNG 114

 Score = 108 (43.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             + +K   GA+ P+ VK+A+   ++    L
Sbjct:   199 NGQKP-SGATEPITVKFANNPSQKSSQAL 226

 Score = 94 (38.1 bits), Expect = 7.2e-17, Sum P(2) = 7.2e-17
 Identities = 34/120 (28%), Positives = 50/120 (41%)

Query:   295 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 352
             P  +YP P        R L+N   +++  V   +P             I G  G    +F
Sbjct:   234 PNRRYPGPLHHQAQRFR-LDNLL-NMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIF 291

Query:   353 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             +Y++  +  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   292 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 351

 Score = 65 (27.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 14/62 (22%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349

Query:   163 NG 164
             NG
Sbjct:   350 NG 351


>RGD|1560027 [details] [associations]
            symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
            binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
            EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
            ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
            PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
            InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
            Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
        Length = 373

 Score = 179 (68.1 bits), Expect = 7.4e-17, Sum P(2) = 7.4e-17
 Identities = 47/176 (26%), Positives = 95/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    38 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:    98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   155 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 208

 Score = 129 (50.5 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 22/64 (34%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TGVS+  GF+ ++    A+ AI 
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184

Query:   409 MMNG 412
              +NG
Sbjct:   185 GLNG 188

 Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +E  + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99

Query:   410 MNG 412
             +NG
Sbjct:   100 LNG 102

 Score = 108 (43.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             + +K   GA+ P+ VK+A+   ++    L
Sbjct:   187 NGQKP-SGATEPITVKFANNPSQKSSQAL 214

 Score = 94 (38.1 bits), Expect = 7.4e-17, Sum P(2) = 7.4e-17
 Identities = 30/106 (28%), Positives = 43/106 (40%)

Query:   309 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 366
             G + L + P   S      +P             I G  G    +F+Y++  +  +  L 
Sbjct:   248 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 307

Query:   367 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
               F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   308 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 353

 Score = 65 (27.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 14/62 (22%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351

Query:   163 NG 164
             NG
Sbjct:   352 NG 353


>UNIPROTKB|O09032 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
            CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
            RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
            SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
            KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
            ArrayExpress:O09032 Genevestigator:O09032
            GermOnline:ENSRNOG00000023601 Uniprot:O09032
        Length = 373

 Score = 179 (68.1 bits), Expect = 7.4e-17, Sum P(2) = 7.4e-17
 Identities = 47/176 (26%), Positives = 95/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    38 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:    98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   155 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 208

 Score = 129 (50.5 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 22/64 (34%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TGVS+  GF+ ++    A+ AI 
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184

Query:   409 MMNG 412
              +NG
Sbjct:   185 GLNG 188

 Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +E  + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99

Query:   410 MNG 412
             +NG
Sbjct:   100 LNG 102

 Score = 108 (43.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             + +K   GA+ P+ VK+A+   ++    L
Sbjct:   187 NGQKP-SGATEPITVKFANNPSQKSSQAL 214

 Score = 94 (38.1 bits), Expect = 7.4e-17, Sum P(2) = 7.4e-17
 Identities = 30/106 (28%), Positives = 43/106 (40%)

Query:   309 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 366
             G + L + P   S      +P             I G  G    +F+Y++  +  +  L 
Sbjct:   248 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 307

Query:   367 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
               F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   308 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 353

 Score = 65 (27.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 14/62 (22%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351

Query:   163 NG 164
             NG
Sbjct:   352 NG 353


>UNIPROTKB|P26378 [details] [associations]
            symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
            processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
            processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
            eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
            EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
            EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
            EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
            IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
            RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
            RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
            PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
            MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
            PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
            Ensembl:ENST00000371823 Ensembl:ENST00000371824
            Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
            KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
            UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
            HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
            EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
            ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
            Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
        Length = 380

 Score = 179 (68.1 bits), Expect = 8.2e-17, Sum P(2) = 8.2e-17
 Identities = 47/176 (26%), Positives = 95/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:   105 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 161

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   162 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 215

 Score = 129 (50.5 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 22/64 (34%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TGVS+  GF+ ++    A+ AI 
Sbjct:   132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191

Query:   409 MMNG 412
              +NG
Sbjct:   192 GLNG 195

 Score = 120 (47.3 bits), Expect = 0.00021, P = 0.00021
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +E  + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106

Query:   410 MNG 412
             +NG
Sbjct:   107 LNG 109

 Score = 108 (43.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             + +K   GA+ P+ VK+A+   ++    L
Sbjct:   194 NGQKP-SGATEPITVKFANNPSQKSSQAL 221

 Score = 94 (38.1 bits), Expect = 8.2e-17, Sum P(2) = 8.2e-17
 Identities = 30/106 (28%), Positives = 43/106 (40%)

Query:   309 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 366
             G + L + P   S      +P             I G  G    +F+Y++  +  +  L 
Sbjct:   255 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 314

Query:   367 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
               F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   315 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 360

 Score = 65 (27.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 14/62 (22%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358

Query:   163 NG 164
             NG
Sbjct:   359 NG 360


>UNIPROTKB|F1LRX3 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
            Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
        Length = 380

 Score = 179 (68.1 bits), Expect = 8.2e-17, Sum P(2) = 8.2e-17
 Identities = 47/176 (26%), Positives = 95/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:   105 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 161

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   162 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 215

 Score = 129 (50.5 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 22/64 (34%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TGVS+  GF+ ++    A+ AI 
Sbjct:   132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191

Query:   409 MMNG 412
              +NG
Sbjct:   192 GLNG 195

 Score = 120 (47.3 bits), Expect = 0.00021, P = 0.00021
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +E  + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106

Query:   410 MNG 412
             +NG
Sbjct:   107 LNG 109

 Score = 108 (43.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             + +K   GA+ P+ VK+A+   ++    L
Sbjct:   194 NGQKP-SGATEPITVKFANNPSQKSSQAL 221

 Score = 94 (38.1 bits), Expect = 8.2e-17, Sum P(2) = 8.2e-17
 Identities = 30/106 (28%), Positives = 43/106 (40%)

Query:   309 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 366
             G + L + P   S      +P             I G  G    +F+Y++  +  +  L 
Sbjct:   255 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 314

Query:   367 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
               F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   315 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 360

 Score = 65 (27.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 14/62 (22%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358

Query:   163 NG 164
             NG
Sbjct:   359 NG 360


>UNIPROTKB|F1P856 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
            Ensembl:ENSCAFT00000006315 Uniprot:F1P856
        Length = 382

 Score = 179 (68.1 bits), Expect = 8.4e-17, Sum P(2) = 8.4e-17
 Identities = 47/176 (26%), Positives = 95/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    61 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 120

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:   121 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 177

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   178 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 231

 Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 22/64 (34%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TGVS+  GF+ ++    A+ AI 
Sbjct:   148 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 207

Query:   409 MMNG 412
              +NG
Sbjct:   208 GLNG 211

 Score = 120 (47.3 bits), Expect = 0.00021, P = 0.00021
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +E  + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 122

Query:   410 MNG 412
             +NG
Sbjct:   123 LNG 125

 Score = 108 (43.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   150 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 209

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             + +K   GA+ P+ VK+A+   ++    L
Sbjct:   210 NGQKP-SGATEPITVKFANNPSQKSSQAL 237

 Score = 94 (38.1 bits), Expect = 8.4e-17, Sum P(2) = 8.4e-17
 Identities = 34/120 (28%), Positives = 50/120 (41%)

Query:   295 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 352
             P  +YP P        R L+N   +++  V   +P             I G  G    +F
Sbjct:   245 PNRRYPGPLHHQAQRFR-LDNLL-NMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIF 302

Query:   353 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             +Y++  +  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   303 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 362

 Score = 65 (27.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 14/62 (22%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360

Query:   163 NG 164
             NG
Sbjct:   361 NG 362


>UNIPROTKB|F1LRL1 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
            Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
        Length = 384

 Score = 179 (68.1 bits), Expect = 8.7e-17, Sum P(2) = 8.7e-17
 Identities = 47/176 (26%), Positives = 95/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    49 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 108

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:   109 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 165

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   166 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 219

 Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 22/64 (34%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TGVS+  GF+ ++    A+ AI 
Sbjct:   136 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 195

Query:   409 MMNG 412
              +NG
Sbjct:   196 GLNG 199

 Score = 120 (47.3 bits), Expect = 0.00021, P = 0.00021
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +E  + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110

Query:   410 MNG 412
             +NG
Sbjct:   111 LNG 113

 Score = 108 (43.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   138 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 197

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             + +K   GA+ P+ VK+A+   ++    L
Sbjct:   198 NGQKP-SGATEPITVKFANNPSQKSSQAL 225

 Score = 94 (38.1 bits), Expect = 8.7e-17, Sum P(2) = 8.7e-17
 Identities = 30/106 (28%), Positives = 43/106 (40%)

Query:   309 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 366
             G + L + P   S      +P             I G  G    +F+Y++  +  +  L 
Sbjct:   259 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 318

Query:   367 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
               F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   319 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 364

 Score = 65 (27.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 14/62 (22%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362

Query:   163 NG 164
             NG
Sbjct:   363 NG 364


>UNIPROTKB|B1APY8 [details] [associations]
            symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
            EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
            IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
            Uniprot:B1APY8
        Length = 385

 Score = 179 (68.1 bits), Expect = 8.8e-17, Sum P(2) = 8.8e-17
 Identities = 47/176 (26%), Positives = 95/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:   110 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 166

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   167 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 220

 Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 22/64 (34%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TGVS+  GF+ ++    A+ AI 
Sbjct:   137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196

Query:   409 MMNG 412
              +NG
Sbjct:   197 GLNG 200

 Score = 120 (47.3 bits), Expect = 0.00021, P = 0.00021
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +E  + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111

Query:   410 MNG 412
             +NG
Sbjct:   112 LNG 114

 Score = 108 (43.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             + +K   GA+ P+ VK+A+   ++    L
Sbjct:   199 NGQKP-SGATEPITVKFANNPSQKSSQAL 226

 Score = 94 (38.1 bits), Expect = 8.8e-17, Sum P(2) = 8.8e-17
 Identities = 30/106 (28%), Positives = 43/106 (40%)

Query:   309 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 366
             G + L + P   S      +P             I G  G    +F+Y++  +  +  L 
Sbjct:   260 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 319

Query:   367 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
               F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   320 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 365

 Score = 65 (27.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 14/62 (22%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363

Query:   163 NG 164
             NG
Sbjct:   364 NG 365


>MGI|MGI:107427 [details] [associations]
            symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
            EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
            PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
            ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
            PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
            Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
            InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
            Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
        Length = 385

 Score = 179 (68.1 bits), Expect = 8.8e-17, Sum P(2) = 8.8e-17
 Identities = 47/176 (26%), Positives = 95/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:   110 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 166

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   167 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 220

 Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 22/64 (34%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TGVS+  GF+ ++    A+ AI 
Sbjct:   137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196

Query:   409 MMNG 412
              +NG
Sbjct:   197 GLNG 200

 Score = 120 (47.3 bits), Expect = 0.00021, P = 0.00021
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +E  + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111

Query:   410 MNG 412
             +NG
Sbjct:   112 LNG 114

 Score = 108 (43.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             + +K   GA+ P+ VK+A+   ++    L
Sbjct:   199 NGQKP-SGATEPITVKFANNPSQKSSQAL 226

 Score = 94 (38.1 bits), Expect = 8.8e-17, Sum P(2) = 8.8e-17
 Identities = 30/106 (28%), Positives = 43/106 (40%)

Query:   309 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 366
             G + L + P   S      +P             I G  G    +F+Y++  +  +  L 
Sbjct:   260 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 319

Query:   367 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
               F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   320 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 365

 Score = 65 (27.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 14/62 (22%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363

Query:   163 NG 164
             NG
Sbjct:   364 NG 365


>ZFIN|ZDB-GENE-990415-246 [details] [associations]
            symbol:elavl4 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
            EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
            Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
            Uniprot:F1R133
        Length = 408

 Score = 179 (68.1 bits), Expect = 9.3e-17, Sum P(2) = 9.3e-17
 Identities = 47/176 (26%), Positives = 95/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    87 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 146

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:   147 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 203

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   204 RILV-DQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGAAEPITVKFANNPSQ 257

 Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
 Identities = 21/64 (32%), Positives = 40/64 (62%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TG S+  GF+ ++    A+ AI 
Sbjct:   174 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIK 233

Query:   409 MMNG 412
              +NG
Sbjct:   234 GLNG 237

 Score = 120 (47.3 bits), Expect = 0.00023, P = 0.00023
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +E  + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148

Query:   410 MNG 412
             +NG
Sbjct:   149 LNG 151

 Score = 109 (43.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   176 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGL 235

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             + +K   GA+ P+ VK+A+   ++    L
Sbjct:   236 NGQKP-SGAAEPITVKFANNPSQKTSQAL 263

 Score = 95 (38.5 bits), Expect = 9.3e-17, Sum P(2) = 9.3e-17
 Identities = 34/120 (28%), Positives = 50/120 (41%)

Query:   295 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 352
             P  +YP P        R L+N   +++  V   +P             I G  G    +F
Sbjct:   271 PNRRYPGPLHHQAQRFR-LDNLL-NMAYGVKRFSPITIDSMTSLVGMNIPGHTGTGWCIF 328

Query:   353 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             +Y++  +  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   329 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 388

 Score = 65 (27.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 14/62 (22%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386

Query:   163 NG 164
             NG
Sbjct:   387 NG 388


>UNIPROTKB|D4AAT0 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
            Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
        Length = 351

 Score = 179 (68.1 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
 Identities = 47/176 (26%), Positives = 95/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +  ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    43 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 102

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:   103 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 159

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   160 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 213

 Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 22/64 (34%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TGVS+  GF+ ++    A+ AI 
Sbjct:   130 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 189

Query:   409 MMNG 412
              +NG
Sbjct:   190 GLNG 193

 Score = 120 (47.3 bits), Expect = 0.00018, P = 0.00018
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +E  + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104

Query:   410 MNG 412
             +NG
Sbjct:   105 LNG 107

 Score = 108 (43.1 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
 Identities = 26/89 (29%), Positives = 48/89 (53%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   132 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 191

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             + +K   GA+ P+ VK+A+   ++    L
Sbjct:   192 NGQKP-SGATEPITVKFANNPSQKSSQAL 219

 Score = 90 (36.7 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
 Identities = 25/72 (34%), Positives = 35/72 (48%)

Query:   343 IEGPPGAN--LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESP 400
             I G  G    +F+Y++  +  +  L   F  FG V + KV  D  T   K FGFV+  + 
Sbjct:   260 IPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 319

Query:   401 ASAQNAIAMMNG 412
               A  AIA +NG
Sbjct:   320 DEAAMAIASLNG 331

 Score = 65 (27.9 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
 Identities = 14/62 (22%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  LF  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329

Query:   163 NG 164
             NG
Sbjct:   330 NG 331


>UNIPROTKB|Q91903 [details] [associations]
            symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
            laevis" [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
            development" evidence=IMP] [GO:0008298 "intracellular mRNA
            localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
            polyadenylylation element binding" evidence=IDA] [GO:0030529
            "ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0051260 "protein homooligomerization" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
            GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
            GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
            HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
            EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
            RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
            ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
            GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
            CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
            Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
        Length = 389

 Score = 181 (68.8 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
 Identities = 47/177 (26%), Positives = 95/177 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC--FVICPSRQEADKA 71
             +  L V  +P++MT+ +L ++F     ++   +++DK T        FV     ++A+KA
Sbjct:    65 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKA 124

Query:    72 VNACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
             +N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I  
Sbjct:   125 INTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 181

Query:   131 LQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
              +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   182 SRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 236

 Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 22/64 (34%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TGVS+  GF+ ++    A+ AI 
Sbjct:   153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 212

Query:   409 MMNG 412
              +NG
Sbjct:   213 GLNG 216

 Score = 125 (49.1 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
 Identities = 27/89 (30%), Positives = 51/89 (57%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             + +K  PGA+ P+ VK+A+   +++ H +
Sbjct:   215 NGQKP-PGATEPITVKFANNPSQKVNHTI 242

 Score = 115 (45.5 bits), Expect = 0.00077, P = 0.00077
 Identities = 25/64 (39%), Positives = 37/64 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT-GVSKCFGFVSYESPASAQNAIA 408
             NL + ++PQ    +EL + F + G + S K+  DK T G S  +GFV+Y  P  A+ AI 
Sbjct:    67 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAIN 126

Query:   409 MMNG 412
              +NG
Sbjct:   127 TLNG 130

 Score = 90 (36.7 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
 Identities = 22/62 (35%), Positives = 32/62 (51%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             +F+Y++  +  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +
Sbjct:   308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367

Query:   411 NG 412
             NG
Sbjct:   368 NG 369

 Score = 65 (27.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
 Identities = 16/82 (19%), Positives = 42/82 (51%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  +F  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367

Query:   163 NGKHKMEGSSVPLVVKWADTEK 184
             NG +++    + +  K + T K
Sbjct:   368 NG-YRLGDRVLQVSFKTSKTHK 388


>UNIPROTKB|Q1JQ73 [details] [associations]
            symbol:elavl1-a "ELAV-like protein 1-A" species:8355
            "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
            "cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
            evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
            [GO:0008298 "intracellular mRNA localization" evidence=IMP]
            [GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
            [GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
            [GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
            "protein oligomerization" evidence=IDA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
            GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
            KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
            RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
            SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
            KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
            Uniprot:Q1JQ73
        Length = 337

 Score = 174 (66.3 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
 Identities = 51/182 (28%), Positives = 97/182 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT----RASRCC--------FVI 61
             R  L V  +P++MT+ +L ++F     V+   +I+DK      R+S           FV 
Sbjct:    19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVN 78

Query:    62 CPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSA 120
               + ++A++A+N  +  +     S  ++V +A    E ++   L+I  LP+ +++ +V  
Sbjct:    79 YLNAKDAERAINTLNGLRL---QSKTIKVSFARPSSESIKDANLYISGLPRTMTQKDVED 135

Query:   121 LFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 178
             +F  +G I + ++L   Q T  S+G AF++++ + +A  A+ + NG HK  GSS P+ VK
Sbjct:   136 MFLPFGHIINSRVLV-DQATGLSRGVAFIRFDKRSEAEEAIASFNG-HKPPGSSEPITVK 193

Query:   179 WA 180
             +A
Sbjct:   194 FA 195

 Score = 124 (48.7 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 22/64 (34%), Positives = 42/64 (65%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL+I  +P+    +++ + F  FG +++++V VD+ATG+S+   F+ ++  + A+ AIA
Sbjct:   117 ANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIA 176

Query:   409 MMNG 412
               NG
Sbjct:   177 SFNG 180

 Score = 94 (38.1 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             +F+Y++ Q+  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +
Sbjct:   257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316

Query:   411 NG 412
             NG
Sbjct:   317 NG 318


>UNIPROTKB|E1C240 [details] [associations]
            symbol:ELAVL2 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
            EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
            IPI:IPI00584568 ProteinModelPortal:E1C240
            Ensembl:ENSGALT00000025475 Uniprot:E1C240
        Length = 388

 Score = 175 (66.7 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
 Identities = 47/176 (26%), Positives = 94/176 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P+ MT+ +L ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    66 KTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAI 125

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:   126 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 182

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K   ++ P+ VK+A+   +
Sbjct:   183 RILV-DQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQ-KPPAATEPITVKFANNPSQ 236

 Score = 126 (49.4 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TG+S+  GF+ ++    A+ AI 
Sbjct:   153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIK 212

Query:   409 MMNG 412
              +NG
Sbjct:   213 GLNG 216

 Score = 125 (49.1 bits), Expect = 5.9e-05, P = 5.9e-05
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +EL + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    68 NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINT 127

Query:   410 MNG 412
             +NG
Sbjct:   128 LNG 130

 Score = 108 (43.1 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
 Identities = 25/84 (29%), Positives = 47/84 (55%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGL 214

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             + +K  P A+ P+ VK+A+   ++
Sbjct:   215 NGQKP-PAATEPITVKFANNPSQK 237

 Score = 98 (39.6 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
 Identities = 24/93 (25%), Positives = 43/93 (46%)

Query:    73 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
             N  H    +   SSP+      G  E  +  L +  LP+++++ E+ +LF   G I+  +
Sbjct:    42 NTAHGSNAINNCSSPID----SGNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCK 97

Query:   133 ILRGS-QQTSKGCAFLKYETKEQALAALEAING 164
             ++R      S G  F+ Y   + A  A+  +NG
Sbjct:    98 LVRDKITGQSLGYGFVNYVDPKDAEKAINTLNG 130

 Score = 96 (38.9 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
 Identities = 33/120 (27%), Positives = 46/120 (38%)

Query:   295 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 352
             P  +YP P        R L+N         +   P             I G  G    +F
Sbjct:   250 PNRRYPAPLAQQAQRFR-LDNLLNMAYGVKSRFPPMTIDGMTSLAGINIPGHAGTGWCIF 308

Query:   353 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             +Y++  +  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   309 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 368

 Score = 63 (27.2 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
 Identities = 13/62 (20%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  +F  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366

Query:   163 NG 164
             NG
Sbjct:   367 NG 368


>ZFIN|ZDB-GENE-040704-9 [details] [associations]
            symbol:elavl2 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
            IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
            Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
        Length = 388

 Score = 180 (68.4 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
 Identities = 47/176 (26%), Positives = 96/176 (54%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +L ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAI 126

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS +G I   
Sbjct:   127 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITS 183

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             +IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   184 RILV-DQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 237

 Score = 132 (51.5 bits), Expect = 9.8e-06, P = 9.8e-06
 Identities = 23/64 (35%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  FGR++++++ VD+ TGVS+  GF+ ++    A+ AI 
Sbjct:   154 ANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIK 213

Query:   409 MMNG 412
              +NG
Sbjct:   214 GLNG 217

 Score = 125 (49.1 bits), Expect = 5.9e-05, P = 5.9e-05
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +EL + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 128

Query:   410 MNG 412
             +NG
Sbjct:   129 LNG 131

 Score = 119 (46.9 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 28/89 (31%), Positives = 49/89 (55%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F +F  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   156 LYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGL 215

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHKL 104
             + +K  PGA+ P+ VK+A+   ++    L
Sbjct:   216 NGQKP-PGATEPITVKFANNPSQKSSQAL 243

 Score = 90 (36.7 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
 Identities = 22/62 (35%), Positives = 32/62 (51%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             +F+Y++  +  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +
Sbjct:   307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366

Query:   411 NG 412
             NG
Sbjct:   367 NG 368

 Score = 62 (26.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
 Identities = 13/62 (20%), Positives = 32/62 (51%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E  +  +F  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366

Query:   163 NG 164
             NG
Sbjct:   367 NG 368


>TAIR|locus:2199700 [details] [associations]
            symbol:PAB3 "poly(A) binding protein 3" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0006397
            "mRNA processing" evidence=IGI] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
            EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
            RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
            SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
            GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
            OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
            Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
        Length = 660

 Score = 143 (55.4 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
 Identities = 40/151 (26%), Positives = 75/151 (49%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             L+ G +   +TEA L  +FK  A V  V + +D+  R+    ++   +  +A +A+ A +
Sbjct:    51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110

Query:    77 NKKTLPGASSPLQVKYADGELE-RLEHK--LFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
                  P    P+++  ++ +   RL  K  +FI  L  ++    +   FS +GTI   ++
Sbjct:   111 YT---PLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAING 164
                    SKG  F+++E +E A AA++ +NG
Sbjct:   168 AMDVTGRSKGYGFVQFEKEESAQAAIDKLNG 198

 Score = 136 (52.9 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
 Identities = 27/67 (40%), Positives = 43/67 (64%)

Query:   346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 405
             P   N+++ ++P+E G+ EL   F  FG + SA V  D++ G S+CFGFV++E   +A +
Sbjct:   226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQS-GNSRCFGFVNFECTEAAAS 284

Query:   406 AIAMMNG 412
             A+  MNG
Sbjct:   285 AVEKMNG 291

 Score = 132 (51.5 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 64/280 (22%), Positives = 107/280 (38%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             ++V  +PK + E +L   F +F ++    +++D++  +    FV     + A  AV   +
Sbjct:   231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290

Query:    77 N------------KKTLPGASSPLQVKYADGELERLEHK----LFIGMLPKNVSEAEVSA 120
                           +        L+ K+    + R E      L++  L  +V + ++  
Sbjct:   291 GISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKE 350

Query:   121 LFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
             +FS YG +   +++   Q  S+G  F+ Y   E+AL AL  +NGK  M G   PL +  A
Sbjct:   351 MFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGK--MIGRK-PLYIALA 407

Query:   181 DTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQ-- 238
               +++                P +   HP   G +P    PP + Y  Q   S    Q  
Sbjct:   408 QRKEDRRAHLQALFSQIRAPGPMSGFHHPP-GGPMP---GPPQHMYVGQNGASMVPSQPI 463

Query:   239 -YRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPR 277
              Y   P Q  PG     P    GN +           GPR
Sbjct:   464 GYGFQP-QFMPGMR---PGSGPGNFIVPYPLQRQPQTGPR 499

 Score = 128 (50.1 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
 Identities = 26/71 (36%), Positives = 43/71 (60%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             + E   GANL++ ++     D++L   F  +G V S+KV ++   G+S+ FGFV+Y +P 
Sbjct:   325 RFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383

Query:   402 SAQNAIAMMNG 412
              A  A++ MNG
Sbjct:   384 EALRALSEMNG 394

 Score = 121 (47.7 bits), Expect = 0.00036, P = 0.00036
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+FI ++     ++ L   F +FG +LS KV +D  TG SK +GFV +E   SAQ AI  
Sbjct:   137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDK 195

Query:   410 MNG 412
             +NG
Sbjct:   196 LNG 198


>ZFIN|ZDB-GENE-000210-17 [details] [associations]
            symbol:hug "HuG" species:7955 "Danio rerio"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
            ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
            ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
        Length = 368

 Score = 166 (63.5 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
 Identities = 46/178 (25%), Positives = 92/178 (51%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR---------CCFVICPS 64
             +  L +  +P++M++ +L ++F     V+   +I+DK    S            FV   +
Sbjct:    55 KTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVN 114

Query:    65 RQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFS 123
               +A++A+N  +  +     S  ++V YA    + ++   L+I  LPK +++  V  +F+
Sbjct:   115 PSDAERAINTLNGLRL---QSKTIKVSYARPSSDGIKDANLYISGLPKTMTQKNVEDMFT 171

Query:   124 IYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
              YG I + +IL       S+G AF++++ + +A  A++ +NG  K  G+S P+ VK+A
Sbjct:   172 QYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGS-KPSGASEPITVKFA 228

 Score = 118 (46.6 bits), Expect = 0.00033, P = 0.00033
 Identities = 20/69 (28%), Positives = 44/69 (63%)

Query:   344 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASA 403
             +G   ANL+I  +P+    + + + F  +GR++++++ VD+A+G+S+   F+ ++  + A
Sbjct:   145 DGIKDANLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEA 204

Query:   404 QNAIAMMNG 412
             + AI  +NG
Sbjct:   205 EEAIKDLNG 213

 Score = 115 (45.5 bits), Expect = 0.00070, P = 0.00070
 Identities = 27/71 (38%), Positives = 40/71 (56%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKC--------FGFVSYESPA 401
             NL I ++PQ    +EL + F + G V SAK+  DK  G+S          +GFV+Y +P+
Sbjct:    57 NLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNPS 116

Query:   402 SAQNAIAMMNG 412
              A+ AI  +NG
Sbjct:   117 DAERAINTLNG 127

 Score = 95 (38.5 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
 Identities = 33/110 (30%), Positives = 49/110 (44%)

Query:   305 GGMLGHRP--LNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGD 362
             GG + H+P     SP SV  +V++ N                   G  +F+Y++ Q+  +
Sbjct:   252 GGPVHHQPQRFRFSPMSVDHSVSSMNVASSSSS------------GWCIFVYNLGQDADE 299

Query:   363 QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
               L   F  FG V + KV  D  T   K FGFV+  +   A  AI+ +NG
Sbjct:   300 GILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSLNG 349


>FB|FBgn0010263 [details] [associations]
            symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
            melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
            "germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
            "nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
            "oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
            evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
            HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
            ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
            InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
        Length = 444

 Score = 178 (67.7 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
 Identities = 49/176 (27%), Positives = 97/176 (55%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P+ M++ ++ ++F  F  V+   +I+DK T  S    FV    +++A+KA+
Sbjct:   109 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAI 168

Query:    73 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             NA +  +     +  ++V  A    E ++   L++  LPKN++++++ +LFS YG I   
Sbjct:   169 NALNGLRL---QNKTIKVSIARPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITS 225

Query:   132 QIL----RGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 181
             +IL     G      SKG  F++++ + +A  A++ +NG    + S+ P+ VK+A+
Sbjct:   226 RILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTP-KNSTEPITVKFAN 280

 Score = 135 (52.6 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 32/105 (30%), Positives = 48/105 (45%)

Query:   308 LGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGN 367
             +G    NN+  + +    N+N               E  P  NL + ++PQ     E+ +
Sbjct:    69 VGQATANNAASNNNNNNNNTNNNNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRS 128

Query:   368 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
              F +FG V S K+  DK TG S  +GFV+Y     A+ AI  +NG
Sbjct:   129 LFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNG 173

 Score = 84 (34.6 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             +F+Y++  +  +  L   F  FG V S KV  D  +   K FGFV+  +   A  AI  +
Sbjct:   363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422

Query:   411 NG 412
             NG
Sbjct:   423 NG 424


>ZFIN|ZDB-GENE-990415-245 [details] [associations]
            symbol:elavl1 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
            PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
            Bgee:F1QM02 Uniprot:F1QM02
        Length = 340

 Score = 164 (62.8 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
 Identities = 43/170 (25%), Positives = 92/170 (54%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++M++ +L ++F     V+   +I+DK    S    FV   +  +A++A+
Sbjct:    33 KTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAI 92

Query:    73 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             +  +  +     S  ++V YA    + ++   L+I  LPK +++ +V  +F  YG I + 
Sbjct:    93 STLNGLRL---QSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINS 149

Query:   132 QILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
             ++L       S+G AF++++ + +A  A++ +NG+ K  G++  + VK+A
Sbjct:   150 RVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQ-KPPGAAEQMTVKFA 198

 Score = 130 (50.8 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 26/63 (41%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ     EL + F + G V SAK+  DK  G S  +GFV+Y +P  A+ AI+ 
Sbjct:    35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94

Query:   410 MNG 412
             +NG
Sbjct:    95 LNG 97

 Score = 120 (47.3 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 21/64 (32%), Positives = 43/64 (67%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL+I  +P+    +++   F  +GR+++++V VD+A+G+S+   F+ ++  A A++AI 
Sbjct:   120 ANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIK 179

Query:   409 MMNG 412
              +NG
Sbjct:   180 DLNG 183

 Score = 93 (37.8 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
 Identities = 24/62 (38%), Positives = 32/62 (51%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             +FIY++ Q+  +  L   F  FG V + KV  D  T   K FGFV+      A  AIA +
Sbjct:   260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319

Query:   411 NG 412
             NG
Sbjct:   320 NG 321

 Score = 87 (35.7 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 23/73 (31%), Positives = 38/73 (52%)

Query:    93 ADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQT-SKGCAFLKYET 151
             AD EL   +  L +  LP+N+S+ E+ +LFS  G ++  +++R      S G  F+ Y  
Sbjct:    26 AD-ELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLN 84

Query:   152 KEQALAALEAING 164
                A  A+  +NG
Sbjct:    85 PNDAERAISTLNG 97


>DICTYBASE|DDB_G0293558 [details] [associations]
            symbol:pabpc1A "polyadenylate binding protein (PABP)"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
            GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
            ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
            EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
            ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
        Length = 565

 Score = 148 (57.2 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
 Identities = 39/150 (26%), Positives = 72/150 (48%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRC-CFVICPSRQEADKAVNAC 75
             L+VG +   ++E  L  +F +  LV  + + +D  TR S    +V   +  +A++A++  
Sbjct:    12 LYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTL 71

Query:    76 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
             +N   + G +  +     D  L +     +FI  L K +    +   FS +G I   +++
Sbjct:    72 NNTP-IRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVV 130

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAING 164
                  +SKG  F+ YET+E A  A+  +NG
Sbjct:   131 TDDGNSSKGFGFVHYETQESADKAIAKVNG 160

 Score = 123 (48.4 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
 Identities = 28/63 (44%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+FI ++ +    + L + F AFG +LS KV  D     SK FGFV YE+  SA  AIA 
Sbjct:    99 NVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAK 157

Query:   410 MNG 412
             +NG
Sbjct:   158 VNG 160

 Score = 119 (46.9 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
 Identities = 26/65 (40%), Positives = 33/65 (50%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL+I +I     + +L   F  FG + SA V  D     SK FGFV Y +P  A  A+
Sbjct:   283 GVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAV 342

Query:   408 AMMNG 412
               MNG
Sbjct:   343 TEMNG 347

 Score = 105 (42.0 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
 Identities = 36/153 (23%), Positives = 65/153 (42%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D    +    FV   +++ ADKA+ A  
Sbjct:   100 VFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAI-AKV 158

Query:    77 NKKTLPGAS---SPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
             N   + G      P +     G+   ++   +F   L ++V   ++  L   YG I ++ 
Sbjct:   159 NGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNIT 218

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
             I+   +  SKG  F  +E+ E A   +E  NGK
Sbjct:   219 IMADDKGKSKGFGFANFESAEAAKNVVENENGK 251

 Score = 97 (39.2 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+F  ++ ++ G  +L    Q +G + +  +  D   G SK FGF ++ES  +A+N +  
Sbjct:   189 NVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDK-GKSKGFGFANFESAEAAKNVVEN 247

Query:   410 MNG 412
              NG
Sbjct:   248 ENG 250

 Score = 67 (28.6 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
 Identities = 16/65 (24%), Positives = 33/65 (50%)

Query:   100 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQ-QTSKGCAFLKYETKEQALAA 158
             +   L++G L   VSE  +  +F+  G + ++++ R +  + S   A++ Y     A  A
Sbjct:     8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERA 67

Query:   159 LEAIN 163
             L+ +N
Sbjct:    68 LDTLN 72


>FB|FBgn0086675 [details] [associations]
            symbol:fne "found in neurons" species:7227 "Drosophila
            melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
            RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
            binding" evidence=IDA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
            EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
            OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
            RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
            RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
            IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
            EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
            EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
            EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
            EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
            UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
            OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
        Length = 356

 Score = 146 (56.5 bits), Expect = 4.5e-15, Sum P(3) = 4.5e-15
 Identities = 43/160 (26%), Positives = 79/160 (49%)

Query:    59 FVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAE 117
             FV     ++A+KAVN  +  +     +  ++V YA    E ++   L++  LPKN+S+ +
Sbjct:    89 FVNYVRAEDAEKAVNTLNGLRL---QNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPD 145

Query:   118 VSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 176
             +  +F+ +G I   +IL  +    SKG  F++++ + +A  A++ +NGK   +G + P+ 
Sbjct:   146 LEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTP-KGYAEPIT 204

Query:   177 VKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALP 216
             VK+A+                    P A +    L GALP
Sbjct:   205 VKFANNPSNSAKAQIAPPLTAYLT-PQAAAATRRLAGALP 243

 Score = 124 (48.7 bits), Expect = 8.4e-08, Sum P(3) = 8.4e-08
 Identities = 21/69 (30%), Positives = 41/69 (59%)

Query:   344 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASA 403
             E   GANL++  +P+     +L   F +FG+++++++  D  +G+SK  GF+ ++    A
Sbjct:   125 ESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEA 184

Query:   404 QNAIAMMNG 412
             + AI  +NG
Sbjct:   185 ERAIQELNG 193

 Score = 95 (38.5 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
 Identities = 24/79 (30%), Positives = 42/79 (53%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK++++  L  MF  F  +    I+ D  +  S+   F+    R EA++A+   
Sbjct:   132 LYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQEL 191

Query:    76 HNKKTLPGASSPLQVKYAD 94
              N KT  G + P+ VK+A+
Sbjct:   192 -NGKTPKGYAEPITVKFAN 209

 Score = 90 (36.7 bits), Expect = 4.5e-15, Sum P(3) = 4.5e-15
 Identities = 23/62 (37%), Positives = 31/62 (50%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             +F+Y++  E  +  L   F  FG V S KV  D  T   K FGFV+  +   A  AI  +
Sbjct:   275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334

Query:   411 NG 412
             NG
Sbjct:   335 NG 336

 Score = 74 (31.1 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
 Identities = 15/62 (24%), Positives = 34/62 (54%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTS-KGCAFLKYETKEQALAALEAI 162
             +F+  L     E  +  LF  +G ++ ++++R  Q +  KG  F+     ++A+ A++++
Sbjct:   275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334

Query:   163 NG 164
             NG
Sbjct:   335 NG 336

 Score = 61 (26.5 bits), Expect = 8.4e-08, Sum P(3) = 8.4e-08
 Identities = 11/42 (26%), Positives = 24/42 (57%)

Query:    94 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR 135
             DG  +     L +  LP+ +++ E+ +LFS  G ++  +++R
Sbjct:    18 DGSNDESRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVR 59

 Score = 59 (25.8 bits), Expect = 4.5e-15, Sum P(3) = 4.5e-15
 Identities = 9/39 (23%), Positives = 22/39 (56%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT 52
             R  L V  +P+ MT+ ++ ++F     ++   +++DK +
Sbjct:    25 RTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVS 63

 Score = 42 (19.8 bits), Expect = 8.4e-08, Sum P(3) = 8.4e-08
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query:   138 QQTSKGCAFLKYETKEQALAALEAING 164
             Q  S G  F+ Y   E A  A+  +NG
Sbjct:    81 QGQSLGYGFVNYVRAEDAEKAVNTLNG 107


>POMBASE|SPAC57A7.04c [details] [associations]
            symbol:pabp "mRNA export shuttling protein"
            species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
            translational initiation" evidence=NAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0006446 "regulation of translational initiation"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
            GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
            GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
            RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
            IntAct:P31209 STRING:P31209 PRIDE:P31209
            EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
            OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
        Length = 653

 Score = 145 (56.1 bits), Expect = 8.2e-07, P = 8.2e-07
 Identities = 80/314 (25%), Positives = 129/314 (41%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +++  +   +TE +   +F +F  +  ++++KD+  +     FV   + + A KAV+  +
Sbjct:   263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322

Query:    77 NK-----KTLPGASSP-------LQVKYADGELERLEH----KLFIGMLPKNVSEAEVSA 120
             +K     K   G +         L+ +Y   +LE++       LFI  L   V +  + A
Sbjct:   323 DKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKA 382

Query:   121 LFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
              FS +GTI   +I+   Q  SKG  F+ Y T E+A  A+  +N +  + G   PL V  A
Sbjct:   383 EFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN-QRMLAGK--PLYVALA 439

Query:   181 DTEKEXXXXXXXXXXXXXNNLP-----NADSQHPSL-FGAL-PMGYAPPYNGYGYQASGS 233
                KE             N         A +  P++ +GA  P+ Y P   GY   A+ +
Sbjct:   440 Q-RKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATGPLIYGP--GGYPIPAAVN 496

Query:   234 YGLMQYRLP----PMQNQPGFHGIIP-----PVNQGNAMRGASPDLSSNMGPRNYAMPPS 284
              G     +P    PM   PG     P     P   G   RG  P     M     ++P +
Sbjct:   497 -GRGMPMVPGHNGPMPMYPGMPTQFPAGGPAPGYPGMNARGPVPAQGRPMMMPG-SVPSA 554

Query:   285 GFV-GSGYPAVPGL 297
             G       PAVPG+
Sbjct:   555 GPAEAEAVPAVPGM 568

 Score = 136 (52.9 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
 Identities = 29/64 (45%), Positives = 37/64 (57%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NLFI ++  E  D+ L   F AFG + SAK+  D+  G SK FGFV Y +P  A  A+
Sbjct:   363 GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAV 421

Query:   408 AMMN 411
               MN
Sbjct:   422 TEMN 425

 Score = 133 (51.9 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
 Identities = 37/150 (24%), Positives = 69/150 (46%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG++   +TEA L  +F     V  + + +D  TR S    +V   + ++ +KA++  
Sbjct:    82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141

Query:    76 HNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
              N   + G    +     D  L ++    +FI  L   +    +   FS +G I   ++ 
Sbjct:   142 -NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVA 200

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAING 164
                   +KG  F+ +++ E A AA+E +NG
Sbjct:   201 VDELGNAKGYGFVHFDSVESANAAIEHVNG 230

 Score = 85 (35.0 bits), Expect = 9.3e-10, Sum P(2) = 9.3e-10
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I ++  E  +QE  + F  FG + S  +  D+     + FGFV+Y +   AQ A+  
Sbjct:   262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDE 320

Query:   410 MN 411
             +N
Sbjct:   321 LN 322

 Score = 78 (32.5 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
 Identities = 39/137 (28%), Positives = 50/137 (36%)

Query:   275 GPRNYAMPPSGFVGSGYPAVPGLQYPMP-YPGGMLGHRPLNN-SPGSVSPAVANSNPXXX 332
             GP  Y +P +   G G P VPG   PMP YPG M    P    +PG          P   
Sbjct:   485 GPGGYPIP-AAVNGRGMPMVPGHNGPMPMYPG-MPTQFPAGGPAPGYPGMNARGPVPAQG 542

Query:   333 XXXXXXXXXQIEGPPGANLF--IYHIPQEFGDQELG-----NAFQAFGRVLSAKVFVDKA 385
                         GP  A     +  +P+ F   +L      +  Q  G +L  KVFV + 
Sbjct:   543 RPMMMPGSVPSAGPAEAEAVPAVPGMPERFTAADLAAVPEESRKQVLGELLYPKVFVREE 602

Query:   386 TGVSKCFGFVSYESPAS 402
                 K  G +  E P S
Sbjct:   603 KLSGKITGML-LEMPNS 618


>TAIR|locus:2012161 [details] [associations]
            symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
            evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
            biosynthetic process" evidence=RCA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
            EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
            RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
            UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
            SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
            ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
            GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
            OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
        Length = 671

 Score = 151 (58.2 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
 Identities = 43/150 (28%), Positives = 72/150 (48%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+VG +   +T++QL   F +   V  V + +D TTR S    +V   + Q+A +A+N  
Sbjct:    47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106

Query:    76 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
              N   L G +  +     D  L +     +FI  L K++    +   FS +G I   ++ 
Sbjct:   107 -NFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVA 165

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAING 164
                   SKG  F++Y+T E A  A++ +NG
Sbjct:   166 VDPSGQSKGYGFVQYDTDEAAQGAIDKLNG 195

 Score = 139 (54.0 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 73/328 (22%), Positives = 138/328 (42%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             ++V  + + +++ +L  +F EF +     I++D   ++    FV   +  +A +AV+A +
Sbjct:   226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285

Query:    77 -----NKKTLPGAS-------SPLQVKYADGELERLEHK----LFIGMLPKNVSEAEVSA 120
                  +K+   G +       + L+ K+     E  +      L++  L ++V++ ++  
Sbjct:   286 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLRE 345

Query:   121 LFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
              F+ +GTI   +++R     S+G  F+ + T E+A  A+  +NGK  +   + PL V  A
Sbjct:   346 HFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIV---TKPLYVALA 402

Query:   181 DTEKEXXXXXXXXXXXXXN-NLPNADSQHPSLF--GALPMGYAPPYNGYGYQA---SGSY 234
               +++               N+P A      ++  G  PMG    Y G G  A      +
Sbjct:   403 QRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFY-GQGPPAMIPQPGF 461

Query:   235 GLMQYRLPPMQ--NQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYP 292
             G  Q  +P M+    P  +  +P + QG   +          G R  A+P         P
Sbjct:   462 GYQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQQQQQQQRPGGGRRGALPQPQ-----QP 516

Query:   293 AVPGLQYPMPYPGGMLGH--RPLNNSPG 318
             + P +Q  M   G M  +  R +N  PG
Sbjct:   517 S-PMMQQQMHPRGRMYRYPQRDVNTMPG 543

 Score = 124 (48.7 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
 Identities = 27/63 (42%), Positives = 39/63 (61%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+FI ++ +    + L   F AFG +LS KV VD + G SK +GFV Y++  +AQ AI  
Sbjct:   134 NIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDK 192

Query:   410 MNG 412
             +NG
Sbjct:   193 LNG 195

 Score = 117 (46.2 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
 Identities = 25/65 (38%), Positives = 38/65 (58%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G+NL++ ++ +   D +L   F  FG + S KV  D + GVS+  GFV++ +P  A  AI
Sbjct:   326 GSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPS-GVSRGSGFVAFSTPEEATRAI 384

Query:   408 AMMNG 412
               MNG
Sbjct:   385 TEMNG 389

 Score = 105 (42.0 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
 Identities = 32/154 (20%), Positives = 70/154 (45%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    +  D + ++    FV   + + A  A++  +
Sbjct:   135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194

Query:    77 -----NKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
                  +K+   G       +   GE  +  + +++  L +++S+ E++ +F  +G     
Sbjct:   195 GMLLNDKQVYVGPFVHKLQRDPSGEKVKFTN-VYVKNLSESLSDEELNKVFGEFGVTTSC 253

Query:   132 QILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
              I+R  +  SKG  F+ +E  + A  A++A+NGK
Sbjct:   254 VIMRDGEGKSKGFGFVNFENSDDAARAVDALNGK 287

 Score = 101 (40.6 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+++ ++ +   D+EL   F  FG   S  +  D   G SK FGFV++E+   A  A+  
Sbjct:   225 NVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDA 283

Query:   410 MNG 412
             +NG
Sbjct:   284 LNG 286

 Score = 69 (29.3 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
 Identities = 17/72 (23%), Positives = 37/72 (51%)

Query:    93 ADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYET 151
             A G  ++    L++G L   V+++++   F+  G +  +++ R  + + S G  ++ Y T
Sbjct:    36 AAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYAT 95

Query:   152 KEQALAALEAIN 163
              + A  AL  +N
Sbjct:    96 PQDASRALNELN 107


>WB|WBGene00003903 [details] [associations]
            symbol:pab-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0009792 "embryo development ending in
            birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
            GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
            GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
            RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
            STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
            EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
            EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
            UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
            OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
        Length = 692

 Score = 135 (52.6 bits), Expect = 9.0e-15, Sum P(2) = 9.0e-15
 Identities = 37/150 (24%), Positives = 69/150 (46%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L++G +   ++EA L   F     V  + + +D T+R S    +V      +A++A++  
Sbjct:    59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118

Query:    76 HNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
              N + + G    +     D    R  +  +FI  L + +    V   FS++G I   ++ 
Sbjct:   119 -NFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVA 177

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAING 164
                +  SKG  F+ +ET+  A  A+E +NG
Sbjct:   178 TDDEGNSKGYGFVHFETEHSAQTAIEKVNG 207

 Score = 132 (51.5 bits), Expect = 9.0e-15, Sum P(2) = 9.0e-15
 Identities = 28/64 (43%), Positives = 39/64 (60%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ +I ++  D  L + F +FG + SAKV VD+  G SK FGFV +E P  A  A+
Sbjct:   342 GVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDE-NGRSKGFGFVCFEKPEEATAAV 400

Query:   408 AMMN 411
               MN
Sbjct:   401 TDMN 404

 Score = 119 (46.9 bits), Expect = 0.00064, P = 0.00064
 Identities = 68/250 (27%), Positives = 98/250 (39%)

Query:    69 DKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSE-AEVSAL---FSI 124
             D  ++ C  +K     S+ L+ KY   + ER++    + +  KN+ E      L   FS 
Sbjct:   307 DCKLSVCRAQKKSE-RSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSS 365

Query:   125 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 184
             +GTI   +++      SKG  F+ +E  E+A AA+  +N K  M G+  PL V  A  ++
Sbjct:   366 FGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSK--MIGAK-PLYVALAQRKE 422

Query:   185 EXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGY----GYQASGSYGLM--- 237
             +               L     Q  S   A+   Y P   GY       A G  G     
Sbjct:   423 DRRAQLASQYMQRLATLRMG--QQASGVPAMTQLYQPGQQGYFVPNPMNAQGRPGFQPQS 480

Query:   238 -QYRLPP----MQNQPGFHGIIPPVNQGNA--MRGASPDLSSNMGPRNYAMPPSGFVGSG 290
              Q R PP     QNQ        P NQ      +   P + +N G   Y M P     +G
Sbjct:   481 AQIRGPPGQRVFQNQMFMQY---PFNQRQVYPQQQGRPPMRTNDGRPQYGMAPRP---AG 534

Query:   291 YPAV--PGLQ 298
              P V  PG+Q
Sbjct:   535 APRVGGPGVQ 544

 Score = 92 (37.4 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
 Identities = 32/125 (25%), Positives = 58/125 (46%)

Query:    64 SRQEADKAVNAC--HNKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSA 120
             S Q A + VN     +KK   G   P   +  + GE       +F+    +++ + ++SA
Sbjct:   197 SAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSA 256

Query:   121 LFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
             +FS +G I    ++  +Q   KG  F+ +  ++ A  A+E +N    +EG+   L V  A
Sbjct:   257 MFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSI-LEGTDCKLSVCRA 315

Query:   181 DTEKE 185
               + E
Sbjct:   316 QKKSE 320

 Score = 90 (36.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+F+ +  +    ++L   F  FG + SA V  D A G  K FGFV++    +A  A+  
Sbjct:   239 NVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTD-AQGKPKGFGFVAFADQDAAGQAVEK 297

Query:   410 MN 411
             +N
Sbjct:   298 LN 299

 Score = 69 (29.3 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
 Identities = 22/83 (26%), Positives = 35/83 (42%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +FV    +H+ + +L AMF +F  +    ++ D   +     FV    +  A +AV    
Sbjct:   240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKL- 298

Query:    77 NKKTLPGASSPLQVKYADGELER 99
             N   L G    L V  A  + ER
Sbjct:   299 NDSILEGTDCKLSVCRAQKKSER 321

 Score = 48 (22.0 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
 Identities = 19/60 (31%), Positives = 24/60 (40%)

Query:   209 PSLFG-ALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 267
             P + G  + MG AP     G    G+     Y+ PP Q QP  H   P    G   +G S
Sbjct:   536 PRVGGPGVQMGGAP-IRQQGPAPRGAPQKPFYQGPPRQQQPQQHSQQPAQQPGQQGQGQS 594

 Score = 41 (19.5 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query:   342 QIEGPPGANLF 352
             QI GPPG  +F
Sbjct:   482 QIRGPPGQRVF 492


>DICTYBASE|DDB_G0274523 [details] [associations]
            symbol:DDB_G0274523 "RNA recognition motif-containing
            protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
            RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
            EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
            InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
        Length = 904

 Score = 151 (58.2 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
 Identities = 47/177 (26%), Positives = 85/177 (48%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVN 73
             +  +FV  +P    +  L  +F ++  V    ++ D    +    FV   S QE+  A+ 
Sbjct:   108 QTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIE 167

Query:    74 AC-----HNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTI 128
                     NKK L   S+     Y +   +   + LFI  LP +V++ ++  LF  +G I
Sbjct:   168 ELDGYQYQNKKLLCRLSN----LYTNLNSKYPSNNLFIKPLPYDVTDDQLRKLFEPFGKI 223

Query:   129 KDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
              + +++      SK   F+++ ++  A  A++A+NG    + S  PLVVK+ADTE++
Sbjct:   224 IECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVVKYADTEQQ 280

 Score = 139 (54.0 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+F+ H+P EF D++L N F  +G+VLS+KV +D   G S  +GFV + SP  +  AI  
Sbjct:   110 NVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPK-GNSYGYGFVRFSSPQESAAAIEE 168

Query:   410 MNG 412
             ++G
Sbjct:   169 LDG 171

 Score = 124 (48.7 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
 Identities = 27/66 (40%), Positives = 36/66 (54%)

Query:   347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNA 406
             P  NLFI  +P +  D +L   F+ FG+++  KV +D   G SK  GFV + S   A  A
Sbjct:   195 PSNNLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDH-NGQSKFAGFVRFSSELDASKA 253

Query:   407 IAMMNG 412
             I  MNG
Sbjct:   254 IDAMNG 259

 Score = 116 (45.9 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
 Identities = 24/63 (38%), Positives = 33/63 (52%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NLF++H+P    D  L   F  FG++ S +V  DK TG +K +GFV +     A      
Sbjct:   770 NLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKE 829

Query:   410 MNG 412
             MNG
Sbjct:   830 MNG 832

 Score = 113 (44.8 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
 Identities = 26/87 (29%), Positives = 46/87 (52%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             LF+  +P  +T+ QL  +F+ F  + E  ++ D   ++    FV   S  +A KA++A +
Sbjct:   199 LFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMN 258

Query:    77 NKKTLPGASSPLQVKYADGELERLEHK 103
               +    +  PL VKYAD E +++  K
Sbjct:   259 GVRINKDSGYPLVVKYADTEQQKISRK 285

 Score = 99 (39.9 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
 Identities = 19/69 (27%), Positives = 41/69 (59%)

Query:    96 ELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQA 155
             ELER +  +F+  LP   ++ ++  LFS YG +   +++   +  S G  F+++ + +++
Sbjct:   103 ELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQES 162

Query:   156 LAALEAING 164
              AA+E ++G
Sbjct:   163 AAAIEELDG 171


>ZFIN|ZDB-GENE-120215-101 [details] [associations]
            symbol:si:dkey-205h23.2 "si:dkey-205h23.2"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            ZFIN:ZDB-GENE-120215-101 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GeneTree:ENSGT00560000076837 EMBL:CU929433
            Ensembl:ENSDART00000151364 Uniprot:I3IS08
        Length = 188

 Score = 188 (71.2 bits), Expect = 3.5e-14, P = 3.5e-14
 Identities = 36/51 (70%), Positives = 39/51 (76%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCF 392
             Q EGP G NLFIYH+PQEFGD EL   F  FG V+SAKVFVD+AT  SKCF
Sbjct:   138 QREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISAKVFVDRATNQSKCF 188


>UNIPROTKB|P0CB38 [details] [associations]
            symbol:PABPC4L "Polyadenylate-binding protein 4-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
            EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
            ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
            DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
            UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
            neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
            Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
        Length = 370

 Score = 131 (51.2 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
 Identities = 46/159 (28%), Positives = 73/159 (45%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TE  L   F     V  + I +D+ TR S    +V      +A KA++  
Sbjct:    12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71

Query:    76 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
              N   + G S  L     D  L R     +FI  L K++    +   FS +G I   +++
Sbjct:    72 -NFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 130

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
                 Q SKG AF+ ++ +  A  A+E +NGK  ++G  V
Sbjct:   131 -SDDQGSKGYAFVHFQNQSAADRAIEEMNGK-LLKGCKV 167

 Score = 122 (48.0 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
 Identities = 25/63 (39%), Positives = 40/63 (63%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +   +  D+ L + F  +G+ LS KV  D ++G SK FGFVS++S  +A+ A+  
Sbjct:   191 NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEE 249

Query:   410 MNG 412
             MNG
Sbjct:   250 MNG 252

 Score = 115 (45.5 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
 Identities = 25/71 (35%), Positives = 38/71 (53%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             +I G  G  L+I ++     D++L N F +FG +   KV  ++  G SK FG + + SP 
Sbjct:   286 RIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPE 343

Query:   402 SAQNAIAMMNG 412
              A  A+  MNG
Sbjct:   344 DATKAMTEMNG 354

 Score = 98 (39.6 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
 Identities = 38/156 (24%), Positives = 69/156 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D    +    FV   ++  AD+A+    
Sbjct:   100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM- 157

Query:    77 NKKTLPGASSPL-QVKYA-DGELE-RLEHKLFIGMLPKN----VSEAEVSALFSIYGTIK 129
             N K L G    + + K   D E E R +   F  +  KN    + +  +  +FS YG   
Sbjct:   158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 217

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
              ++++  S   SKG  F+ +++ E A  A+E +NG+
Sbjct:   218 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGR 253


>UNIPROTKB|F1SNK9 [details] [associations]
            symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
            EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
        Length = 400

 Score = 146 (56.5 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
 Identities = 46/175 (26%), Positives = 93/175 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVN 73
             R K+   Q  ++ T++ L   F+++  +D   I+  K  ++    FV     ++A+KA+N
Sbjct:    82 RDKITGNQFREYFTDSSL---FEKWRPLDSEVIVLGKGWQSLGYGFVNYIDPKDAEKAIN 138

Query:    74 ACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
               +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   +
Sbjct:   139 TLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSR 195

Query:   133 ILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
             IL   Q T  S+G  F++++ + +A  A++ +NG+ K  G++ P+ VK+A+   +
Sbjct:   196 ILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 248

 Score = 128 (50.1 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TG+S+  GF+ ++    A+ AI 
Sbjct:   165 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 224

Query:   409 MMNG 412
              +NG
Sbjct:   225 GLNG 228

 Score = 114 (45.2 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+V  +PK MT+ +L  +F ++  +    I+ D+ T  SR   F+    R EA++A+   
Sbjct:   167 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 226

Query:    76 HNKKTLPGASSPLQVKYADGELER 99
             + +K  PGA+ P+ VK+A+   ++
Sbjct:   227 NGQKP-PGATEPITVKFANNPSQK 249

 Score = 105 (42.0 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
 Identities = 34/120 (28%), Positives = 48/120 (40%)

Query:   295 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 352
             P  +YP P        R L+N         +  +P             I G PG    +F
Sbjct:   262 PNRRYPGPLAQQAQRFR-LDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIF 320

Query:   353 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             +Y++  +  +  L   F  FG V + KV  D  T   K FGFV+  +   A  AIA +NG
Sbjct:   321 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 380

 Score = 66 (28.3 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
 Identities = 17/64 (26%), Positives = 32/64 (50%)

Query:    73 NACHNKKTLPG-ASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +   T+    SSP+      G  E  +  L +  LP+N+++ E+ +LF   G I+  
Sbjct:    23 NTANGPTTINNNCSSPVD----SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESC 78

Query:   132 QILR 135
             +++R
Sbjct:    79 KLVR 82

 Score = 64 (27.6 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
 Identities = 10/39 (25%), Positives = 23/39 (58%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT 52
             +  L V  +P++MT+ +L ++F     ++   +++DK T
Sbjct:    48 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 86

 Score = 63 (27.2 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
 Identities = 13/62 (20%), Positives = 33/62 (53%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             +F+  L  +  E+ +  +F  +G + +++++R  +    KG  F+     ++A  A+ ++
Sbjct:   319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378

Query:   163 NG 164
             NG
Sbjct:   379 NG 380


>UNIPROTKB|D4AC14 [details] [associations]
            symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
            Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
        Length = 631

 Score = 132 (51.5 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
 Identities = 42/152 (27%), Positives = 75/152 (49%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     V  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +FI  L K++    +   FS +G I   +
Sbjct:    73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG AF+ +ET+E A  A+E +NG
Sbjct:   130 VVC-DENGSKGYAFVHFETQEAANKAIEKMNG 160

 Score = 126 (49.4 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
 Identities = 28/63 (44%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  +E  D+ L   F  FG+ LS KV  D  +G SK FGFVSYE    A  A+  
Sbjct:   192 NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 125 (49.1 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL+I ++     D++L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 118 (46.6 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
 Identities = 38/163 (23%), Positives = 74/163 (45%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ A+KA+   +
Sbjct:   101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    + V +  +  LFS +G    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++R     SKG  F+ YE  E A  A+E +NGK +M G S+
Sbjct:   220 VKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGK-EMSGKSI 261

 Score = 56 (24.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 32/118 (27%), Positives = 49/118 (41%)

Query:   213 GALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSS 272
             G  P G+    +    + SG    +++ L P  N P   G+ P   Q   +  A P+L+ 
Sbjct:   440 GGRPQGFQGMPSAL--RQSGPRPALRH-LAPTGNAPASRGL-PTTAQRVGVPTAVPNLAP 495

Query:   273 NM-----GPRNYAMPPSGF---VGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 322
                     PR  A+ P  +   V S +PA+  LQ P P    + G  PL  S  + +P
Sbjct:   496 RATVAAAAPR--AVAPYKYASNVRSPHPAIQPLQAPQPAVH-VQGQEPLTASMLAAAP 550


>UNIPROTKB|J3KTH5 [details] [associations]
            symbol:PABPC4L "Polyadenylate-binding protein 4-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
            EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
            RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
            Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
            Uniprot:J3KTH5
        Length = 428

 Score = 131 (51.2 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
 Identities = 46/159 (28%), Positives = 73/159 (45%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TE  L   F     V  + I +D+ TR S    +V      +A KA++  
Sbjct:    70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129

Query:    76 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
              N   + G S  L     D  L R     +FI  L K++    +   FS +G I   +++
Sbjct:   130 -NFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 188

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
                 Q SKG AF+ ++ +  A  A+E +NGK  ++G  V
Sbjct:   189 -SDDQGSKGYAFVHFQNQSAADRAIEEMNGK-LLKGCKV 225

 Score = 122 (48.0 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
 Identities = 25/63 (39%), Positives = 40/63 (63%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +   +  D+ L + F  +G+ LS KV  D ++G SK FGFVS++S  +A+ A+  
Sbjct:   249 NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEE 307

Query:   410 MNG 412
             MNG
Sbjct:   308 MNG 310

 Score = 115 (45.5 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
 Identities = 25/71 (35%), Positives = 38/71 (53%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             +I G  G  L+I ++     D++L N F +FG +   KV  ++  G SK FG + + SP 
Sbjct:   344 RIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPE 401

Query:   402 SAQNAIAMMNG 412
              A  A+  MNG
Sbjct:   402 DATKAMTEMNG 412

 Score = 98 (39.6 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
 Identities = 38/156 (24%), Positives = 69/156 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D    +    FV   ++  AD+A+    
Sbjct:   158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM- 215

Query:    77 NKKTLPGASSPL-QVKYA-DGELE-RLEHKLFIGMLPKN----VSEAEVSALFSIYGTIK 129
             N K L G    + + K   D E E R +   F  +  KN    + +  +  +FS YG   
Sbjct:   216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 275

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
              ++++  S   SKG  F+ +++ E A  A+E +NG+
Sbjct:   276 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGR 311


>UNIPROTKB|G3V9N0 [details] [associations]
            symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
            OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
        Length = 660

 Score = 132 (51.5 bits), Expect = 7.2e-14, Sum P(2) = 7.2e-14
 Identities = 42/152 (27%), Positives = 75/152 (49%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     V  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +FI  L K++    +   FS +G I   +
Sbjct:    73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG AF+ +ET+E A  A+E +NG
Sbjct:   130 VVC-DENGSKGYAFVHFETQEAANKAIEKMNG 160

 Score = 126 (49.4 bits), Expect = 7.2e-14, Sum P(2) = 7.2e-14
 Identities = 28/63 (44%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  +E  D+ L   F  FG+ LS KV  D  +G SK FGFVSYE    A  A+  
Sbjct:   192 NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 125 (49.1 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL+I ++     D++L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 118 (46.6 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
 Identities = 38/163 (23%), Positives = 74/163 (45%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ A+KA+   +
Sbjct:   101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    + V +  +  LFS +G    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++R     SKG  F+ YE  E A  A+E +NGK +M G S+
Sbjct:   220 VKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGK-EMSGKSI 261

 Score = 47 (21.6 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
 Identities = 24/91 (26%), Positives = 34/91 (37%)

Query:   232 GSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGY 291
             G  G  Q  L       G    +P +     +  A+P     + P  YA      V S +
Sbjct:   497 GGAGAAQQGLTDSCQSGGVPTAVPNLAPRATVAAAAPRA---VAPYKYASN----VRSPH 549

Query:   292 PAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 322
             PA+  LQ P P    + G  PL  S  + +P
Sbjct:   550 PAIQPLQAPQPAVH-VQGQEPLTASMLAAAP 579


>UNIPROTKB|Q4VY17 [details] [associations]
            symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
            IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
            Ensembl:ENST00000537323 Uniprot:Q4VY17
        Length = 330

 Score = 136 (52.9 bits), Expect = 9.0e-14, Sum P(2) = 9.0e-14
 Identities = 26/63 (41%), Positives = 41/63 (65%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+++ ++P +  +Q L + F  FG++LS KV  D + G S+CFGFV++E    AQ A+  
Sbjct:   192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNS-GHSRCFGFVNFEKHEEAQKAVVH 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 111 (44.1 bits), Expect = 9.0e-14, Sum P(2) = 9.0e-14
 Identities = 37/152 (24%), Positives = 71/152 (46%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + + +D  TR S    ++      +A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N + L G   P+++ ++  D  L +     +FI  L  ++    +   FS +G I   +
Sbjct:    73 -NFEMLKG--QPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             +    +  S+G  F+ +ET E A  A+  +NG
Sbjct:   130 VAC-DEHGSRGFGFVHFETHEAAQQAINTMNG 160

 Score = 55 (24.4 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAK 379
             G NL++ ++     D +L   F  +G + SAK
Sbjct:   293 GVNLYVKNLDDSIDDDKLRKEFSPYGVITSAK 324


>UNIPROTKB|B1ANR0 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
            EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
            HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
            UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
            SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
        Length = 615

 Score = 131 (51.2 bits), Expect = 9.7e-14, Sum P(2) = 9.7e-14
 Identities = 42/152 (27%), Positives = 75/152 (49%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     V  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +FI  L K++    +   FS +G I   +
Sbjct:    73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG AF+ +ET+E A  A+E +NG
Sbjct:   130 VVC-DENGSKGYAFVHFETQEAADKAIEKMNG 160

 Score = 125 (49.1 bits), Expect = 9.7e-14, Sum P(2) = 9.7e-14
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL+I ++     D++L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 124 (48.7 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 28/63 (44%), Positives = 35/63 (55%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  +E  D+ L   F  FG+ LS KV  D   G SK FGFVSYE    A  A+  
Sbjct:   192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 114 (45.2 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
 Identities = 36/155 (23%), Positives = 69/155 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ ADKA+   +
Sbjct:   101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    + V +  +  LFS +G    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
             ++++R     SKG  F+ YE  E A  A+E +NGK
Sbjct:   220 VKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK 254

 Score = 48 (22.0 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
 Identities = 21/70 (30%), Positives = 29/70 (41%)

Query:   254 IPPVNQGNAMRGASPDLSSN-MGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRP 312
             +P   Q  A R A    +   + P  YA      V S +PA+  LQ P P    + G  P
Sbjct:   470 VPTAVQNLAPRAAVAAAAPRAVAPYKYASS----VRSPHPAIQPLQAPQPAVH-VQGQEP 524

Query:   313 LNNSPGSVSP 322
             L  S  + +P
Sbjct:   525 LTASMLAAAP 534


>UNIPROTKB|F1SV06 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
            GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
            EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
        Length = 631

 Score = 131 (51.2 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
 Identities = 42/152 (27%), Positives = 75/152 (49%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     V  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +FI  L K++    +   FS +G I   +
Sbjct:    73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG AF+ +ET+E A  A+E +NG
Sbjct:   130 VVC-DENGSKGYAFVHFETQEAADKAIEKMNG 160

 Score = 125 (49.1 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
 Identities = 28/63 (44%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  +E  D+ L   F  FG+ LS KV  D + G SK FGFVSYE    A  A+  
Sbjct:   192 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 125 (49.1 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL+I ++     D++L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 114 (45.2 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
 Identities = 36/155 (23%), Positives = 69/155 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ ADKA+   +
Sbjct:   101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    + V +  +  LFS +G    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
             ++++R     SKG  F+ YE  E A  A+E +NGK
Sbjct:   220 VKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGK 254

 Score = 54 (24.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
 Identities = 31/116 (26%), Positives = 49/116 (42%)

Query:   213 GALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ--G--NAMRGASP 268
             G  P G+    +    + SG    +++ L P  N P   G+ P   Q  G   A++  +P
Sbjct:   440 GGRPQGFQGMPSAI--RQSGPRPALRH-LAPTGNAPASRGL-PTTAQRVGVPTAVQNLAP 495

Query:   269 DLS-SNMGPRNYA-MPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 322
               + +   PR  A    +  V S +PA+  LQ P P    + G  PL  S  + +P
Sbjct:   496 RAAVATAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVH-VQGQEPLTASMLAAAP 550


>UNIPROTKB|E2R9I0 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
            EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
            Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
        Length = 631

 Score = 131 (51.2 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
 Identities = 42/152 (27%), Positives = 75/152 (49%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     V  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +FI  L K++    +   FS +G I   +
Sbjct:    73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG AF+ +ET+E A  A+E +NG
Sbjct:   130 VVC-DENGSKGYAFVHFETQEAADKAIEKMNG 160

 Score = 125 (49.1 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
 Identities = 28/63 (44%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  +E  D+ L   F  FG+ LS KV  D + G SK FGFVSYE    A  A+  
Sbjct:   192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 125 (49.1 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL+I ++     D++L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 114 (45.2 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
 Identities = 36/155 (23%), Positives = 69/155 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ ADKA+   +
Sbjct:   101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    + V +  +  LFS +G    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
             ++++R     SKG  F+ YE  E A  A+E +NGK
Sbjct:   220 VKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGK 254

 Score = 50 (22.7 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
 Identities = 31/116 (26%), Positives = 49/116 (42%)

Query:   213 GALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ--G--NAMRGASP 268
             G  P G+    +    + SG    +++ L P  N P   G+ P   Q  G   A++  +P
Sbjct:   440 GGRPQGFQGMPSAI--RQSGPRPALRH-LAPTGNAPASRGL-PTTAQRVGVPTAVQTLAP 495

Query:   269 DLS-SNMGPRNYA-MPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 322
               + +   PR  A    +  V S +PA+  LQ P P    + G  PL  S  + +P
Sbjct:   496 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVH-VQGQEPLTASMLAAAP 550


>UNIPROTKB|Q13310 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
            "cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
            binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
            [GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
            coagulation" evidence=TAS] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
            GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
            GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
            EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
            IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
            RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
            UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
            IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
            DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
            Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
            KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
            GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
            neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
            PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
            NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
            Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
        Length = 644

 Score = 131 (51.2 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
 Identities = 42/152 (27%), Positives = 75/152 (49%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     V  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +FI  L K++    +   FS +G I   +
Sbjct:    73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG AF+ +ET+E A  A+E +NG
Sbjct:   130 VVC-DENGSKGYAFVHFETQEAADKAIEKMNG 160

 Score = 125 (49.1 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL+I ++     D++L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 124 (48.7 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
 Identities = 28/63 (44%), Positives = 35/63 (55%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  +E  D+ L   F  FG+ LS KV  D   G SK FGFVSYE    A  A+  
Sbjct:   192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 114 (45.2 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
 Identities = 36/155 (23%), Positives = 69/155 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ ADKA+   +
Sbjct:   101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    + V +  +  LFS +G    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
             ++++R     SKG  F+ YE  E A  A+E +NGK
Sbjct:   220 VKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK 254

 Score = 50 (22.7 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
 Identities = 22/72 (30%), Positives = 30/72 (41%)

Query:   252 GIIPPVNQGNAMRGASPDLSSN-MGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGH 310
             G +P   Q  A R A    +   + P  YA      V S +PA+  LQ P P    + G 
Sbjct:   497 GGVPTAVQNLAPRAAVAAAAPRAVAPYKYASS----VRSPHPAIQPLQAPQPAVH-VQGQ 551

Query:   311 RPLNNSPGSVSP 322
              PL  S  + +P
Sbjct:   552 EPLTASMLAAAP 563


>UNIPROTKB|A4IFC3 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
            OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
            IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
            Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
            InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
        Length = 645

 Score = 131 (51.2 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
 Identities = 42/152 (27%), Positives = 75/152 (49%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     V  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +FI  L K++    +   FS +G I   +
Sbjct:    73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG AF+ +ET+E A  A+E +NG
Sbjct:   130 VVC-DENGSKGYAFVHFETQEAADKAIEKMNG 160

 Score = 125 (49.1 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
 Identities = 28/63 (44%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  +E  D+ L   F  FG+ LS KV  D + G SK FGFVSYE    A  A+  
Sbjct:   192 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 125 (49.1 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL+I ++     D++L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 114 (45.2 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
 Identities = 36/155 (23%), Positives = 69/155 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ ADKA+   +
Sbjct:   101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    + V +  +  LFS +G    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
             ++++R     SKG  F+ YE  E A  A+E +NGK
Sbjct:   220 VKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGK 254

 Score = 49 (22.3 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
 Identities = 21/72 (29%), Positives = 32/72 (44%)

Query:   252 GIIPPVNQGNAMRGASPDLSSNMGPRNYA-MPPSGFVGSGYPAVPGLQYPMPYPGGMLGH 310
             G +P   Q  A R A   +++   PR  A    +  + S +PA+  LQ P P    + G 
Sbjct:   497 GGVPTAVQNLAPRAA---VAAAAAPRAVAPYKYASSIRSPHPAIQPLQAPQPAVH-VQGQ 552

Query:   311 RPLNNSPGSVSP 322
              PL  S  + +P
Sbjct:   553 EPLTASMLAAAP 564


>TAIR|locus:2058573 [details] [associations]
            symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0046686
            "response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
            GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
            EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
            UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
            STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
            EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
            TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
            ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
        Length = 662

 Score = 159 (61.0 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 86/355 (24%), Positives = 141/355 (39%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             ++V  + +  T+ +L   F ++  +    +++D   ++    FV   + ++A +AV A +
Sbjct:   227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286

Query:    77 NKKT-----LPGASSP-------LQVKYADGELE---RLEH-KLFIGMLPKNVSEAEVSA 120
              KK        G +         L  +Y  G  +   + +   L++  L   V++ ++  
Sbjct:   287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346

Query:   121 LFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
             LF+ +GTI   +++R    TSKG  F+ +    +A   L  +NGK  M G   PL V  A
Sbjct:   347 LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGK--MVGGK-PLYVALA 403

Query:   181 DTEKEXXXXXXXXXXXXXNN-LPNADSQHPSLFGALP-------MGYAPP-----YNGYG 227
               ++E                +P    + P   G  P        G  PP       G+G
Sbjct:   404 QRKEERRAKLQAQFSQMRPAFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPIIPHQPGFG 463

Query:   228 YQASGSYGLMQ-YRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMP---P 283
             YQ     G+   +   PM  QPG  G  P    G    G  P    +  P  Y  P   P
Sbjct:   464 YQPQLVPGMRPAFFGGPMM-QPGQQGPRP----GGRRSGDGPMRHQHQQPMPYMQPQMMP 518

Query:   284 SGFVGSGYPAVPGLQYPM-PYPGGM------LGHRPLNN--SPGSVSPAVANSNP 329
              G  G  YP+  G   P  P PGGM      +   P +   S G ++ ++AN+ P
Sbjct:   519 RGR-GYRYPS-GGRNMPDGPMPGGMVPVAYDMNVMPYSQPMSAGQLATSLANATP 571

 Score = 138 (53.6 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
 Identities = 42/151 (27%), Positives = 70/151 (46%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+VG +  ++T++QL   F E   V  V + +D  T  S    +V   +  +A+KA+   
Sbjct:    48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107

Query:    76 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
              N   L G    +     D    R     LF+  L K+V    +   FS  GTI   ++ 
Sbjct:   108 -NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAINGK 165
                   S+G  F++++T++ A  A+E +NGK
Sbjct:   167 TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGK 197

 Score = 117 (46.2 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+++ ++ +   D EL   F  +G + SA V  D   G S+CFGFV++E+P  A  A+  
Sbjct:   226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEA 284

Query:   410 MNG 412
             +NG
Sbjct:   285 LNG 287

 Score = 101 (40.6 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
 Identities = 22/65 (33%), Positives = 35/65 (53%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D++L   F  FG + S KV  D + G SK  GFV++ + + A   +
Sbjct:   327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPS-GTSKGSGFVAFSAASEASRVL 385

Query:   408 AMMNG 412
               MNG
Sbjct:   386 NEMNG 390


>TAIR|locus:2124261 [details] [associations]
            symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0009651
            "response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
            "translational initiation" evidence=ISS] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
            EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
            EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
            UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
            STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
            EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
            TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
            ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
            Uniprot:P42731
        Length = 629

 Score = 142 (55.0 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
 Identities = 42/152 (27%), Positives = 75/152 (49%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+VG +  ++T++QL   F +   V  V + +D  TR S    +V   + Q+A +A+   
Sbjct:    38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97

Query:    76 HNKKTLPGASSPLQVKYA--DGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
             +    +P    P++V Y+  D  + R     +FI  L +++    +   FS +G I   +
Sbjct:    98 NY---IPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCK 154

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             +   S   SKG  F++Y  +E A  A+E +NG
Sbjct:   155 VAVDSSGQSKGYGFVQYANEESAQKAIEKLNG 186

 Score = 141 (54.7 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 73/345 (21%), Positives = 137/345 (39%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             ++V  + +  T+  L   F E+  +    ++KD   ++    FV   +  +A +AV + +
Sbjct:   217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276

Query:    77 -----NKKTLPGAS-------SPLQVKYADGELERLEH----KLFIGMLPKNVSEAEVSA 120
                  +K+   G +       + L+V+Y     E  +      L++  L  ++S+ ++  
Sbjct:   277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 336

Query:   121 LFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
             +FS +GT+   +++R    TSKG  F+ + T E+A  A+  ++GK  +E   + + +   
Sbjct:   337 IFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGK-MIESKPLYVAIAQR 395

Query:   181 DTEKEXXXXXXXXXXXXXNNLPNADSQHP------------SLFGALPMGYAPPYNGYGY 228
               ++                 P+   + P              +G  P    PP  GYGY
Sbjct:   396 KEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGY 455

Query:   229 QASGSYGLMQYRLPPMQNQPGFH-GIIPPVNQ--GNAMRGASPDLSSNMGPR-NYAMPPS 284
             Q     G+     P     P F   ++ P  Q  G   R      S    P     M P 
Sbjct:   456 QQQLVPGMR----PGGGPVPSFFMPMVQPQQQRPGGGRRPGGIQHSQQQNPMMQQQMHPR 511

Query:   285 GFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 329
             G +   YP   G    +P P  M  + PL  + G+++  ++N+ P
Sbjct:   512 GRMFR-YPQGRGGSGDVP-PYDMGNNMPL--TIGALASNLSNATP 552

 Score = 126 (49.4 bits), Expect = 9.7e-05, P = 9.7e-05
 Identities = 28/66 (42%), Positives = 42/66 (63%)

Query:   348 GA-NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNA 406
             GA N+FI ++ +    + L + F +FG ++S KV VD ++G SK +GFV Y +  SAQ A
Sbjct:   122 GAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKA 180

Query:   407 IAMMNG 412
             I  +NG
Sbjct:   181 IEKLNG 186

 Score = 112 (44.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
 Identities = 23/63 (36%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+++ ++ +   D +L NAF  +G++ SA V  D   G SK FGFV++E+   A  A+  
Sbjct:   216 NVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVES 274

Query:   410 MNG 412
             +NG
Sbjct:   275 LNG 277

 Score = 106 (42.4 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             +NL++ ++     D++L   F  FG V S+KV  D   G SK  GFV++ +P  A  A++
Sbjct:   318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMS 376

Query:   409 MMNG 412
              ++G
Sbjct:   377 QLSG 380


>RGD|1311201 [details] [associations]
            symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
            IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
            MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
            KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
            NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
        Length = 643

 Score = 132 (51.5 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
 Identities = 39/152 (25%), Positives = 77/152 (50%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + + +D+TTR S     V     ++A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +F+  L +++    +   FS +G I   +
Sbjct:    73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG  F+ +ET+E+A  A+E +NG
Sbjct:   130 VVC-DENGSKGYGFVHFETQEEAERAIEKMNG 160

 Score = 122 (48.0 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
 Identities = 26/63 (41%), Positives = 39/63 (61%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I ++ ++  D+ L + F  FG  LS KV  D++ G SK FGFVS+E    A+ A+  
Sbjct:   192 NVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDES-GKSKGFGFVSFERHEDARKAVDE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 119 (46.9 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D+ L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   303 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG--GRSKGFGFVCFSSPEEATKAV 360

Query:   408 AMMNG 412
               MNG
Sbjct:   361 TEMNG 365

 Score = 100 (40.3 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
 Identities = 33/163 (20%), Positives = 74/163 (45%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +FV  + + +    L   F  F  +    ++ D+   +    FV   +++EA++A+   +
Sbjct:   101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I  L +++ +  +  LFS +G    
Sbjct:   160 GMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++      SKG  F+ +E  E A  A++ +NGK  + G  +
Sbjct:   220 VKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKD-LNGKQI 261

 Score = 45 (20.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
 Identities = 29/149 (19%), Positives = 51/149 (34%)

Query:   200 NLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 259
             +L N   Q  +   A+P    P  N +   A G  G       P QN+  ++       Q
Sbjct:   387 HLSNQYMQRMASTSAVPN---PGINPF-QPAQGLSGYFMTATAPTQNRGTYYAPNQTTQQ 442

Query:   260 GNAMRGASPDLSSN-MGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPG 318
             G + RG++    ++     + A+ PS  + S   + P     + +       + +   P 
Sbjct:   443 GPSARGSAQGTRAHPFQNMSSAIHPSNTMPSFSTSGPTSSQAVRHRTASTSTQMMGPHPA 502

Query:   319 SVSPAVANSNPXXXXXXXXXXXXQIEGPP 347
             + S A A   P             +  PP
Sbjct:   503 AASTAAA---PAARTVTQYKYTAGVRNPP 528


>ZFIN|ZDB-GENE-050308-1 [details] [associations]
            symbol:pabpc1b "poly A binding protein, cytoplasmic 1
            b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
            EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
            UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
            Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
            InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
        Length = 634

 Score = 129 (50.5 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
 Identities = 39/150 (26%), Positives = 70/150 (46%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG + + +TEA L   F     +  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
              N   + G    +     D  L +     +FI  L K++    +   FS +G I   +++
Sbjct:    73 -NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAING 164
                +  SKG  F+ +ET+E A  A+E +NG
Sbjct:   132 C-DENGSKGYGFVHFETQEAAERAIEKMNG 160

 Score = 125 (49.1 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
 Identities = 27/65 (41%), Positives = 36/65 (55%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D+ L   F  FG + SAKV +D   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 117 (46.2 bits), Expect = 0.00095, P = 0.00095
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+FI ++ +   ++ L + F AFG +LS KV  D+  G SK +GFV +E+  +A+ AI  
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157

Query:   410 MNG 412
             MNG
Sbjct:   158 MNG 160

 Score = 112 (44.5 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  ++  D +L + F  +G  +S +V  D+  G S+ FGFVS+E    AQ A+  
Sbjct:   192 NVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQRAVDE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 97 (39.2 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
 Identities = 31/163 (19%), Positives = 74/163 (45%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ A++A+   +
Sbjct:   101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    +++ + ++  +FS YG    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++      S+G  F+ +E  E A  A++ +NGK +M G  +
Sbjct:   220 IRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGK-EMNGKLI 261


>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
            symbol:pabpc4 "poly(A) binding protein,
            cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
            EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
            ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
            GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
            NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
        Length = 637

 Score = 127 (49.8 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
 Identities = 27/65 (41%), Positives = 38/65 (58%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL+I ++     D++L   F  FG + SAKV +++  G SK FGFV + SP  A  A+
Sbjct:   294 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAV 351

Query:   408 AMMNG 412
               MNG
Sbjct:   352 TEMNG 356

 Score = 126 (49.4 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
 Identities = 41/152 (26%), Positives = 75/152 (49%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     V  + + +D  TR S    +V      +A++A++  
Sbjct:    14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +FI  L K++    +   FS +G I   +
Sbjct:    74 -NFDVVKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 130

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG AF+ +ET++ A  A+E +NG
Sbjct:   131 VVC-DENGSKGYAFVHFETQDAADRAIEKMNG 161

 Score = 125 (49.1 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
 Identities = 27/63 (42%), Positives = 35/63 (55%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +   +  DQ L   F  +G+ LS KV  D  TG S+ FGFVSYE    A  A+  
Sbjct:   193 NVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEE 251

Query:   410 MNG 412
             MNG
Sbjct:   252 MNG 254

 Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
 Identities = 81/339 (23%), Positives = 134/339 (39%)

Query:    26 MTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH----NKKTL 81
             M + +L  +F ++     V ++ D T ++    FV     ++A+KAV   +    N KT+
Sbjct:   203 MDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTV 262

Query:    82 -PGAS-------SPLQVKYADGELERLEH----KLFIGMLPKNVSEAEVSALFSIYGTIK 129
               G +       + L+ K+   + ER+       L+I  L   + + ++   FS +G+I 
Sbjct:   263 FVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSIT 322

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXX 189
               +++   +  SKG  F+ + + E+A  A+  +NG+  + GS  PL V  A  ++E    
Sbjct:   323 SAKVML-EEGRSKGFGFVCFSSPEEATKAVTEMNGR--IVGSK-PLYVALAQRKEERKAH 378

Query:   190 XXXXXX---XXXNNLP-NADSQHPSLFGALPMGYAPP-YNGYGYQASGSYGLMQYRLPPM 244
                           +P NA        G   M   P   N   Y A     L Q R  P 
Sbjct:   379 LTNQYMQRIAGMRAMPANAIINQFQPAGGYFMPAVPQAQNRTTYYAPNQ--LTQMRPNPR 436

Query:   245 ------QNQPGFHGIIPPVNQGNA---MRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVP 295
                   + Q GF G+   + Q      +R  +P+ +SN GPR          G+G P  P
Sbjct:   437 WQQQGGRGQGGFQGMPSSLRQPGPRANIRHLAPN-ASNQGPRGMPTGAQRVGGTGQPMGP 495

Query:   296 ----GLQYPMPYPGGMLGHRPLNNSPGSVSP-AVANSNP 329
                 G+  P   P         N  P  V P A+  + P
Sbjct:   496 RPAMGMTTPRAMPPYKYASTIRNTQPQVVQPIALQQAQP 534

 Score = 94 (38.1 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
 Identities = 33/163 (20%), Positives = 70/163 (42%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   ++  AD+A+   +
Sbjct:   102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 160

Query:    77 -----NKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+   +  E   ++I     ++ +  +  LF  YG    
Sbjct:   161 GMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLS 220

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++      S+G  F+ YE  E A  A+E +NG  ++ G +V
Sbjct:   221 VKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGT-ELNGKTV 262


>UNIPROTKB|E1C903 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
            EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
            UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
            Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
            NextBio:20822696 Uniprot:E1C903
        Length = 630

 Score = 127 (49.8 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
 Identities = 41/152 (26%), Positives = 75/152 (49%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     V  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +FI  L K++    +   FS +G I   +
Sbjct:    73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG AF+ +ET++ A  A+E +NG
Sbjct:   130 VVC-DENGSKGYAFVHFETQDAADRAIEKMNG 160

 Score = 125 (49.1 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL+I ++     D++L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 121 (47.7 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
 Identities = 26/63 (41%), Positives = 35/63 (55%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +   +  D+ L   F  +G+ LS KV  D  TG SK FGFVS+E    A  A+  
Sbjct:   192 NVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 98 (39.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
 Identities = 33/155 (21%), Positives = 67/155 (43%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   ++  AD+A+   +
Sbjct:   101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I     ++ +  +  LFS YG    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
             ++++      SKG  F+ +E  E A  A+E +NGK
Sbjct:   220 VKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGK 254

 Score = 55 (24.4 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
 Identities = 31/116 (26%), Positives = 45/116 (38%)

Query:   213 GALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSS 272
             G  P G+    N    + SG    +++ L P    P   G+ P   Q   +  A   L+ 
Sbjct:   440 GGRPQGFQGMPNAM--RQSGPRPALRH-LAPAGTAPASRGL-PVSAQRVGVTTAGQSLAP 495

Query:   273 N---MGPRNYAMPPSGF---VGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 322
                   P   A+PP  +   V S +P V  LQ P P    + G  PL  S  + +P
Sbjct:   496 RPPVAAPAPRAVPPYKYASSVRSPHPPVQPLQAPQPAVH-VQGQEPLTASMLAAAP 550


>WB|WBGene00003902 [details] [associations]
            symbol:pab-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0040010 "positive regulation of growth
            rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
            evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
            "receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
            evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
            "P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
            body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
            GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
            GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
            GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
            NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
            ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
            MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
            EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
            EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
            EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
            WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
            ArrayExpress:Q9U302 Uniprot:Q9U302
        Length = 646

 Score = 127 (49.8 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
 Identities = 39/152 (25%), Positives = 72/152 (47%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   + E+ L   F     V  + + +D  TR S    +V      +A++A++  
Sbjct:    34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93

Query:    76 HNKKTLPGASSPLQVKYA--DGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N + L G   P+++ ++  D  + R     +FI  L K +    +   FS++G I   +
Sbjct:    94 -NFEALHG--KPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCK 150

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             +       SKG  F+ +ET+E A  A++ +NG
Sbjct:   151 VAIDEDGFSKGYGFVHFETEEAAQNAIQKVNG 182

 Score = 125 (49.1 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
 Identities = 25/64 (39%), Positives = 38/64 (59%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++ +   D  L   F+++G + SAKV  D+  G SK FGFV +E P  A +A+
Sbjct:   316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAV 374

Query:   408 AMMN 411
               MN
Sbjct:   375 TEMN 378

 Score = 125 (49.1 bits), Expect = 0.00013, P = 0.00013
 Identities = 27/66 (40%), Positives = 43/66 (65%)

Query:   348 GA-NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNA 406
             GA N+FI ++ +   ++ + + F  FG +LS KV +D+  G SK +GFV +E+  +AQNA
Sbjct:   118 GAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNA 176

Query:   407 IAMMNG 412
             I  +NG
Sbjct:   177 IQKVNG 182

 Score = 85 (35.0 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+++ +    +  + L   F  FG + S +V      G SK FGFV++ +P  A+ A+  
Sbjct:   214 NVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT--VEGKSKGFGFVAFANPEEAETAVQA 271

Query:   410 MN 411
             ++
Sbjct:   272 LH 273

 Score = 79 (32.9 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
 Identities = 33/175 (18%), Positives = 73/175 (41%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    +   F  F  +    +  D+   +    FV   + + A  A+   +
Sbjct:   122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181

Query:    77 N-----KKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                   KK   G   P   +  + GE  +    +++     + ++  +  LF+ +G I  
Sbjct:   182 GMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITS 241

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
              +++   +  SKG  F+ +   E+A  A++A++    +EG+ + L V  A  + E
Sbjct:   242 CEVMT-VEGKSKGFGFVAFANPEEAETAVQALHDS-TIEGTDLKLHVCRAQKKSE 294


>CGD|CAL0001392 [details] [associations]
            symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
            "cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
            evidence=IEA] [GO:0006446 "regulation of translational initiation"
            evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
            poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
            GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
            GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
            RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
            SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
            KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
        Length = 629

 Score = 133 (51.9 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 28/63 (44%), Positives = 41/63 (65%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+FI ++     ++ L + F AFG++LS KV  D+  G SKCFGFV YE+  +A+ AI  
Sbjct:   141 NIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEF-GQSKCFGFVHYETAEAAEAAIEN 199

Query:   410 MNG 412
             +NG
Sbjct:   200 VNG 202

 Score = 129 (50.5 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
 Identities = 28/64 (43%), Positives = 38/64 (59%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NLF+ ++      ++L   F+ FG + SAKV VD+A G SK FGFV + +P  A  AI
Sbjct:   335 GVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEA-GKSKGFGFVCFTTPEEATKAI 393

Query:   408 AMMN 411
               MN
Sbjct:   394 TEMN 397

 Score = 122 (48.0 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
 Identities = 37/150 (24%), Positives = 64/150 (42%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG++   + EA L  +F     V  + + +D  ++ S    +V     ++ +KA+   
Sbjct:    54 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEEL 113

Query:    76 HNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
              N   + G    +     D    R  +  +FI  L   +    +   FS +G I   ++ 
Sbjct:   114 -NYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVA 172

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAING 164
                   SK   F+ YET E A AA+E +NG
Sbjct:   173 TDEFGQSKCFGFVHYETAEAAEAAIENVNG 202

 Score = 91 (37.1 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
 Identities = 19/63 (30%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK-ATGVSKCFGFVSYESPASAQNAIA 408
             N+++ +I   + ++     F  FG++ S  ++++K   G SK FGFV++E   SA  A+ 
Sbjct:   234 NIYVKNIDLNYSEESFEKLFSPFGKITS--IYLEKDQDGKSKGFGFVNFEDHESAVKAVE 291

Query:   409 MMN 411
              +N
Sbjct:   292 ELN 294

 Score = 49 (22.3 bits), Expect = 8.6e-05, Sum P(3) = 8.6e-05
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query:   229 QASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNA-MRGASPDL 270
             Q + + GL    +PPM    G  G  PP  +GNA   G +P +
Sbjct:   434 QNAAAGGLPGQFIPPMFY--GQQGFFPPNGRGNAPYPGPNPQM 474

 Score = 37 (18.1 bits), Expect = 8.6e-05, Sum P(3) = 8.6e-05
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query:   345 GPPGANLFIYHIPQEF 360
             GP G  + +Y IP +F
Sbjct:   491 GPNGQPVPVYGIPPQF 506


>WB|WBGene00001368 [details] [associations]
            symbol:exc-7 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0002064 "epithelial cell development"
            evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
            [GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
            OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
            ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
            MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
            GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
            InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
        Length = 456

 Score = 199 (75.1 bits), Expect = 3.9e-13, P = 3.9e-13
 Identities = 88/413 (21%), Positives = 174/413 (42%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L +  +P+ MT+ ++ ++F     ++   +++DK T  S    FV     ++A +AV
Sbjct:    41 KTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAV 100

Query:    73 NACHNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             ++ +  +     +  ++V YA    ++++   L++  +PK+++  E+ ++F  +G I   
Sbjct:   101 SSFNGLRL---QNKTIKVSYARPSNDQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITS 157

Query:   132 QILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE-----KE 185
             +IL  +    SKG  F++++ K++A  A++ +NG     G S  + VK+A+       K 
Sbjct:   158 RILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIP-SGCSEQITVKFANNPASNNPKG 216

Query:   186 XXXXXXXXXXXXXNNLP-----NADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYR 240
                            +P      A +   +  G  PM +AP  + Y Y   G+   +   
Sbjct:   217 LLSDLEAVQQAATTLVPLSTILGAPTLRATAGGIGPMHHAPITSKYRYSPMGAITAVSQP 276

Query:   241 LPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYP 300
                +         +  ++Q NA+ G +P  ++       A+P   F  S   A    Q+ 
Sbjct:   277 TATLPADYLTTSALLQMSQLNALAGLNPFATAT------AVPD--FTAS-LIAHQQQQHA 327

Query:   301 MPYP-GGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQE 359
             +           P  N  G V+   A++                +   G  LF+Y++  +
Sbjct:   328 VAQQHAAQTASPPATN--GQVAGLAAHAQLSALSASVAATLPPSD-TAGYCLFVYNLSSD 384

Query:   360 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
               D  L   F  FG +++ K+  D  T   K + FVS  +   A NA+  +NG
Sbjct:   385 TDDTLLWQLFSQFGAIVNVKILRD-LTQQCKGYAFVSMSNYTEAYNAMLSLNG 436


>ZFIN|ZDB-GENE-070912-150 [details] [associations]
            symbol:si:ch211-168n8.1 "si:ch211-168n8.1"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-070912-150 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
            EMBL:CT027714 IPI:IPI00833044 Ensembl:ENSDART00000122509
            Uniprot:E7F1Z5
        Length = 187

 Score = 178 (67.7 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 36/78 (46%), Positives = 51/78 (65%)

Query:   108 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 167
             ML K  +E +V  LF  YG I++  +LRG    SKGCAF+K+ T  +A +A+  ++G   
Sbjct:     1 MLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHTEAQSAIGGLHGSQT 60

Query:   168 MEGSSVPLVVKWADTEKE 185
             M G+S  LVVK+ADT+KE
Sbjct:    61 MPGASSSLVVKFADTDKE 78

 Score = 140 (54.3 bits), Expect = 6.3e-09, P = 6.3e-09
 Identities = 30/106 (28%), Positives = 53/106 (50%)

Query:    24 KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPG 83
             K  TE  +  +F+ + +++E  +++     +  C FV   +  EA  A+   H  +T+PG
Sbjct:     4 KQQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHTEAQSAIGGLHGSQTMPG 63

Query:    84 ASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFSIYGT 127
             ASS L VK+AD + ER   ++   +G     +    V+  FS Y +
Sbjct:    64 ASSSLVVKFADTDKERTIRRMQQMVGQF--GIFNPSVALPFSTYSS 107


>UNIPROTKB|F1SDG0 [details] [associations]
            symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
            CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
            ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
            GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
        Length = 424

 Score = 197 (74.4 bits), Expect = 5.4e-13, P = 5.4e-13
 Identities = 82/302 (27%), Positives = 133/302 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             ++VG + + ++E  L  +F +   V   ++ KD+ T   +   FV   S ++AD A+   
Sbjct:    15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74

Query:    76 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 132
             +  K L G   P++V  A    + L+    +FIG L   + E  +   FS +G I    +
Sbjct:    75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131

Query:   133 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 188
             I+R      SKG AF+ + + + + AA+EA+NG++       P+ V +A   D++ E   
Sbjct:   132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188

Query:   189 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 248
                       N L  AD  H  LF   P    PP       +S   GL    +PP  + P
Sbjct:   189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSAPNPVVSSLGSGLPPPGMPPPGSFP 244

Query:   249 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 308
                 + PP      +  A P      G   +  P +G  G+G+PA  G  +P P+P G +
Sbjct:   245 P--PVPPPGALPPGIPPAMPPPPMPPGAGGHGPPSAGTPGAGHPA-HGHSHPHPFPPGGM 301

Query:   309 GH 310
              H
Sbjct:   302 PH 303


>UNIPROTKB|E2RQC8 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
            ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
            NextBio:20898275 Uniprot:E2RQC8
        Length = 596

 Score = 126 (49.4 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
 Identities = 40/152 (26%), Positives = 74/152 (48%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +FI  L K++    +   FS +G I   +
Sbjct:    73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG  F+ +ET+E A  A+E +NG
Sbjct:   130 VVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160

 Score = 122 (48.0 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  ++  D+ L + F  FG  LS KV  D++ G SK FGFVS+E    AQ A+  
Sbjct:   192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 117 (46.2 bits), Expect = 0.00088, P = 0.00088
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+FI ++ +   ++ L + F AFG +LS KV  D+  G SK +GFV +E+  +A+ AI  
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157

Query:   410 MNG 412
             MNG
Sbjct:   158 MNG 160

 Score = 90 (36.7 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
 Identities = 30/163 (18%), Positives = 72/163 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ A++A+   +
Sbjct:   101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    +++ +  +  LF  +G    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++      SKG  F+ +E  E A  A++ +NGK ++ G  +
Sbjct:   220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261

 Score = 86 (35.3 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSY 397
             G NL++ ++     D+ L   F  FG + SAKV ++   G SK FGFV +
Sbjct:   293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCF 340

 Score = 41 (19.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query:   282 PPSGFVGSGYPAVPG--LQYP-------MPYPGGML-GHRP--LNNSPGSVSPA 323
             PPSG+  +  P        YP        P P     G RP    N PG++ PA
Sbjct:   364 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA 417

 Score = 41 (19.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 17/62 (27%), Positives = 22/62 (35%)

Query:   219 YAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRN 278
             Y PP      + S  +     R  P QN PG      P    + MR AS  +   M  + 
Sbjct:   382 YYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQR 441

Query:   279 YA 280
              A
Sbjct:   442 VA 443


>DICTYBASE|DDB_G0290307 [details] [associations]
            symbol:DDB_G0290307 "ELAVL1-like protein"
            species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
            ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
            KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
        Length = 459

 Score = 139 (54.0 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 30/63 (47%), Positives = 39/63 (61%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NLFI  +P  +    L + F AFG + S +V VD  TG+S+ FGFV ++  ASAQ AI  
Sbjct:   100 NLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINS 159

Query:   410 MNG 412
             MNG
Sbjct:   160 MNG 162

 Score = 116 (45.9 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+FI  +P EF   +L   F A+G V+ +K+ +D  T  S+  G V Y    SA NA+  
Sbjct:   220 NVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVKS 279

Query:   410 MNG 412
             +NG
Sbjct:   280 LNG 282

 Score = 113 (44.8 bits), Expect = 7.3e-13, Sum P(3) = 7.3e-13
 Identities = 25/89 (28%), Positives = 52/89 (58%)

Query:    98 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQAL 156
             +++ + +FI  LP    + ++S LFS YG + + ++L   +   S+G   ++Y   + A+
Sbjct:   215 QKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAI 274

Query:   157 AALEAINGKHKMEGSSVPLVVKWADTEKE 185
              A++++NG   ++    PL+V++AD E E
Sbjct:   275 NAVKSLNG-FILQDPEKPLIVRFADNEDE 302

 Score = 108 (43.1 bits), Expect = 7.3e-13, Sum P(3) = 7.3e-13
 Identities = 31/122 (25%), Positives = 50/122 (40%)

Query:   299 YPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGA--------N 350
             YP          + + NS G++      + P              + PPG         N
Sbjct:   324 YPQQQQQQQQQQQQMMNSSGAMMYPFYQNMPTMNSLPNSMIGSSSQPPPGGKNPGTDPTN 383

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             L++Y++P +  D  L   F   G + S K+  D+ T V + +GFV   S A + +AI  +
Sbjct:   384 LYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAINSI 443

Query:   411 NG 412
             NG
Sbjct:   444 NG 445

 Score = 86 (35.3 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
 Identities = 22/81 (27%), Positives = 46/81 (56%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 162
             LFI  LP   +   + ++FS +G I   +++   +   S+G  F+K++    A  A+ ++
Sbjct:   101 LFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINSM 160

Query:   163 NGKHKMEGSSVPLVVKWADTE 183
             NG  K+E  +  L+V++A+++
Sbjct:   161 NGA-KVENKT--LLVRFANSD 178

 Score = 75 (31.5 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
 Identities = 26/88 (29%), Positives = 42/88 (47%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVI-CPSRQEADKAVNAC 75
             +F+  +P    + QL  +F  +  V E  ++ D TT ASR   ++     Q A  AV + 
Sbjct:   221 VFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVKSL 280

Query:    76 HNKKTLPGASSPLQVKYADGELERLEHK 103
              N   L     PL V++AD E E+ + +
Sbjct:   281 -NGFILQDPEKPLIVRFADNEDEKKQKR 307

 Score = 63 (27.2 bits), Expect = 7.3e-13, Sum P(3) = 7.3e-13
 Identities = 21/81 (25%), Positives = 36/81 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             LF+  +P   T   L ++F  F  +D   ++ D  T  SR   FV       A  A+N+ 
Sbjct:   101 LFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINSM 160

Query:    76 HNKKTLPGASSPLQVKYADGE 96
             +  K     +  L V++A+ +
Sbjct:   161 NGAKV---ENKTLLVRFANSD 178


>UNIPROTKB|Q4VXU2 [details] [associations]
            symbol:PABPC1L "Polyadenylate-binding protein 1-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
            HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
            UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
            IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
            PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
            Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
            GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
            PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
            GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
            CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
        Length = 614

 Score = 136 (52.9 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
 Identities = 26/63 (41%), Positives = 41/63 (65%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+++ ++P +  +Q L + F  FG++LS KV  D + G S+CFGFV++E    AQ A+  
Sbjct:   192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNS-GHSRCFGFVNFEKHEEAQKAVVH 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 116 (45.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
 Identities = 25/65 (38%), Positives = 35/65 (53%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D +L   F  +G + SAKV  +   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 111 (44.1 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
 Identities = 37/152 (24%), Positives = 71/152 (46%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + + +D  TR S    ++      +A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N + L G   P+++ ++  D  L +     +FI  L  ++    +   FS +G I   +
Sbjct:    73 -NFEMLKG--QPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             +    +  S+G  F+ +ET E A  A+  +NG
Sbjct:   130 VAC-DEHGSRGFGFVHFETHEAAQQAINTMNG 160

 Score = 95 (38.5 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
 Identities = 35/156 (22%), Positives = 70/156 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             +F+  +   +    L   F  F  +    +  D+    SR   FV   + + A +A+N  
Sbjct:   101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTM 158

Query:    76 H-----NKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIK 129
             +     ++K   G     + + A+     LE   +++  LP +V E  +  LFS +G + 
Sbjct:   159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
              ++++R +   S+   F+ +E  E+A  A+  +NGK
Sbjct:   219 SVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGK 254


>UNIPROTKB|P61286 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9913 "Bos taurus" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
            [GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
            GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
            UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
            Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
        Length = 636

 Score = 126 (49.4 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
 Identities = 40/152 (26%), Positives = 74/152 (48%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +FI  L K++    +   FS +G I   +
Sbjct:    73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG  F+ +ET+E A  A+E +NG
Sbjct:   130 VVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160

 Score = 122 (48.0 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  ++  D+ L + F  FG  LS KV  D++ G SK FGFVS+E    AQ A+  
Sbjct:   192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 121 (47.7 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D+ L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 117 (46.2 bits), Expect = 0.00096, P = 0.00096
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+FI ++ +   ++ L + F AFG +LS KV  D+  G SK +GFV +E+  +A+ AI  
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157

Query:   410 MNG 412
             MNG
Sbjct:   158 MNG 160

 Score = 90 (36.7 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
 Identities = 30/163 (18%), Positives = 72/163 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ A++A+   +
Sbjct:   101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    +++ +  +  LF  +G    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++      SKG  F+ +E  E A  A++ +NGK ++ G  +
Sbjct:   220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261

 Score = 41 (19.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query:   282 PPSGFVGSGYPAVPG--LQYP-------MPYPGGML-GHRP--LNNSPGSVSPA 323
             PPSG+  +  P        YP        P P     G RP    N PG++ PA
Sbjct:   404 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA 457


>UNIPROTKB|J9P326 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
            OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
            ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
            KEGG:cfa:612751 Uniprot:J9P326
        Length = 636

 Score = 126 (49.4 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
 Identities = 40/152 (26%), Positives = 74/152 (48%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +FI  L K++    +   FS +G I   +
Sbjct:    73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG  F+ +ET+E A  A+E +NG
Sbjct:   130 VVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160

 Score = 122 (48.0 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  ++  D+ L + F  FG  LS KV  D++ G SK FGFVS+E    AQ A+  
Sbjct:   192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 121 (47.7 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D+ L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 117 (46.2 bits), Expect = 0.00096, P = 0.00096
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+FI ++ +   ++ L + F AFG +LS KV  D+  G SK +GFV +E+  +A+ AI  
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157

Query:   410 MNG 412
             MNG
Sbjct:   158 MNG 160

 Score = 90 (36.7 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
 Identities = 30/163 (18%), Positives = 72/163 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ A++A+   +
Sbjct:   101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    +++ +  +  LF  +G    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++      SKG  F+ +E  E A  A++ +NGK ++ G  +
Sbjct:   220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261

 Score = 41 (19.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query:   282 PPSGFVGSGYPAVPG--LQYP-------MPYPGGML-GHRP--LNNSPGSVSPA 323
             PPSG+  +  P        YP        P P     G RP    N PG++ PA
Sbjct:   404 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA 457


>UNIPROTKB|P11940 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
            [GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
            "cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
            evidence=TAS] [GO:0008494 "translation activator activity"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
            "ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
            regulation of nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
            stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=TAS] [GO:0000288
            "nuclear-transcribed mRNA catabolic process,
            deadenylation-dependent decay" evidence=TAS] [GO:0000289
            "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
            evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
            metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
            process" evidence=TAS] [GO:0044267 "cellular protein metabolic
            process" evidence=TAS] [GO:0045727 "positive regulation of
            translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
            Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
            Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
            GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
            eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
            Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
            PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
            PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
            CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
            EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
            EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
            EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
            IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
            RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
            PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
            PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
            PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
            PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
            SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
            STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
            PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
            KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
            HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
            PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
            BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
            EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
            PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
            Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
        Length = 636

 Score = 126 (49.4 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
 Identities = 40/152 (26%), Positives = 74/152 (48%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +FI  L K++    +   FS +G I   +
Sbjct:    73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG  F+ +ET+E A  A+E +NG
Sbjct:   130 VVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160

 Score = 122 (48.0 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  ++  D+ L + F  FG  LS KV  D++ G SK FGFVS+E    AQ A+  
Sbjct:   192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 121 (47.7 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D+ L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 117 (46.2 bits), Expect = 0.00096, P = 0.00096
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+FI ++ +   ++ L + F AFG +LS KV  D+  G SK +GFV +E+  +A+ AI  
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157

Query:   410 MNG 412
             MNG
Sbjct:   158 MNG 160

 Score = 90 (36.7 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
 Identities = 30/163 (18%), Positives = 72/163 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ A++A+   +
Sbjct:   101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    +++ +  +  LF  +G    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++      SKG  F+ +E  E A  A++ +NGK ++ G  +
Sbjct:   220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261

 Score = 41 (19.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query:   282 PPSGFVGSGYPAVPG--LQYP-------MPYPGGML-GHRP--LNNSPGSVSPA 323
             PPSG+  +  P        YP        P P     G RP    N PG++ PA
Sbjct:   404 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA 457


>UNIPROTKB|F2Z557 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
            EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
            ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
            Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
            Uniprot:F2Z557
        Length = 636

 Score = 126 (49.4 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
 Identities = 40/152 (26%), Positives = 74/152 (48%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +FI  L K++    +   FS +G I   +
Sbjct:    73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG  F+ +ET+E A  A+E +NG
Sbjct:   130 VVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160

 Score = 122 (48.0 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  ++  D+ L + F  FG  LS KV  D++ G SK FGFVS+E    AQ A+  
Sbjct:   192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 121 (47.7 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D+ L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 117 (46.2 bits), Expect = 0.00096, P = 0.00096
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+FI ++ +   ++ L + F AFG +LS KV  D+  G SK +GFV +E+  +A+ AI  
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157

Query:   410 MNG 412
             MNG
Sbjct:   158 MNG 160

 Score = 90 (36.7 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
 Identities = 30/163 (18%), Positives = 72/163 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ A++A+   +
Sbjct:   101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    +++ +  +  LF  +G    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++      SKG  F+ +E  E A  A++ +NGK ++ G  +
Sbjct:   220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261

 Score = 41 (19.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query:   282 PPSGFVGSGYPAVPG--LQYP-------MPYPGGML-GHRP--LNNSPGSVSPA 323
             PPSG+  +  P        YP        P P     G RP    N PG++ PA
Sbjct:   404 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA 457


>UNIPROTKB|I3LS00 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
            mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
            GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
            GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
            Uniprot:I3LS00
        Length = 647

 Score = 126 (49.4 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
 Identities = 40/152 (26%), Positives = 74/152 (48%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +FI  L K++    +   FS +G I   +
Sbjct:    73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG  F+ +ET+E A  A+E +NG
Sbjct:   130 VVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160

 Score = 122 (48.0 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  ++  D+ L + F  FG  LS KV  D++ G SK FGFVS+E    AQ A+  
Sbjct:   192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 121 (47.7 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D+ L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 117 (46.2 bits), Expect = 0.00098, P = 0.00098
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+FI ++ +   ++ L + F AFG +LS KV  D+  G SK +GFV +E+  +A+ AI  
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157

Query:   410 MNG 412
             MNG
Sbjct:   158 MNG 160

 Score = 90 (36.7 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
 Identities = 30/163 (18%), Positives = 72/163 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ A++A+   +
Sbjct:   101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    +++ +  +  LF  +G    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++      SKG  F+ +E  E A  A++ +NGK ++ G  +
Sbjct:   220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261

 Score = 41 (19.5 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query:   282 PPSGFVGSGYPAVPG--LQYP-------MPYPGGML-GHRP--LNNSPGSVSPA 323
             PPSG+  +  P        YP        P P     G RP    N PG++ PA
Sbjct:   404 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA 457


>MGI|MGI:1349722 [details] [associations]
            symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008022 "protein C-terminus binding"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
            EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
            EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
            EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
            PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
            ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
            STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
            PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
            KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
            CleanEx:MM_PABPC1 Genevestigator:P29341
            GermOnline:ENSMUSG00000022283 Uniprot:P29341
        Length = 636

 Score = 126 (49.4 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 40/152 (26%), Positives = 74/152 (48%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +FI  L K++    +   FS +G I   +
Sbjct:    73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG  F+ +ET+E A  A+E +NG
Sbjct:   130 VVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160

 Score = 121 (47.7 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 27/63 (42%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  ++  D+ L   F  FG  LS KV  D++ G SK FGFVS+E    AQ A+  
Sbjct:   192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 121 (47.7 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D+ L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 117 (46.2 bits), Expect = 0.00096, P = 0.00096
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+FI ++ +   ++ L + F AFG +LS KV  D+  G SK +GFV +E+  +A+ AI  
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157

Query:   410 MNG 412
             MNG
Sbjct:   158 MNG 160

 Score = 91 (37.1 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
 Identities = 30/163 (18%), Positives = 72/163 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ A++A+   +
Sbjct:   101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    +++ +  +  LF  +G    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++      SKG  F+ +E  E A  A++ +NGK ++ G  +
Sbjct:   220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261

 Score = 41 (19.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query:   282 PPSGFVGSGYPAVPG--LQYP-------MPYPGGML-GHRP--LNNSPGSVSPA 323
             PPSG+  +  P        YP        P P     G RP    N PG++ PA
Sbjct:   404 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA 457


>RGD|619838 [details] [associations]
            symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008022 "protein C-terminus binding"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
            RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
            ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
            MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
            Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
            UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
            Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
        Length = 636

 Score = 126 (49.4 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 40/152 (26%), Positives = 74/152 (48%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +FI  L K++    +   FS +G I   +
Sbjct:    73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG  F+ +ET+E A  A+E +NG
Sbjct:   130 VVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160

 Score = 121 (47.7 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 27/63 (42%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  ++  D+ L   F  FG  LS KV  D++ G SK FGFVS+E    AQ A+  
Sbjct:   192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 121 (47.7 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D+ L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 117 (46.2 bits), Expect = 0.00096, P = 0.00096
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+FI ++ +   ++ L + F AFG +LS KV  D+  G SK +GFV +E+  +A+ AI  
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157

Query:   410 MNG 412
             MNG
Sbjct:   158 MNG 160

 Score = 91 (37.1 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
 Identities = 30/163 (18%), Positives = 72/163 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ A++A+   +
Sbjct:   101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    +++ +  +  LF  +G    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++      SKG  F+ +E  E A  A++ +NGK ++ G  +
Sbjct:   220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261

 Score = 41 (19.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query:   282 PPSGFVGSGYPAVPG--LQYP-------MPYPGGML-GHRP--LNNSPGSVSPA 323
             PPSG+  +  P        YP        P P     G RP    N PG++ PA
Sbjct:   404 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA 457


>UNIPROTKB|Q15427 [details] [associations]
            symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
            spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
            reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
            evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
            "RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
            GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
            HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
            EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
            EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
            UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
            ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
            MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
            PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
            Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
            KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
            HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
            neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
            OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
            GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
            CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
            Uniprot:Q15427
        Length = 424

 Score = 194 (73.4 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 81/302 (26%), Positives = 132/302 (43%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             ++VG + + ++E  L  +F +   V   ++ KD+ T   +   FV   S ++AD A+   
Sbjct:    15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74

Query:    76 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 132
             +  K L G   P++V  A    + L+    +FIG L   + E  +   FS +G I    +
Sbjct:    75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131

Query:   133 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 188
             I+R      SKG AF+ + + + + AA+EA+NG++       P+ V +A   D++ E   
Sbjct:   132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188

Query:   189 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 248
                       N L  AD  H  LF   P    PP       +S   GL    +PP  + P
Sbjct:   189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSAPNPVVSSLGSGLPPPGMPPPGSFP 244

Query:   249 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 308
                 + PP      +  A P      G   +  P +G  G+G+P   G  +P P+P G +
Sbjct:   245 P--PVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPG-HGHSHPHPFPPGGM 301

Query:   309 GH 310
              H
Sbjct:   302 PH 303


>UNIPROTKB|Q5R8F7 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
            RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
            SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
            InParanoid:Q5R8F7 Uniprot:Q5R8F7
        Length = 636

 Score = 124 (48.7 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 40/152 (26%), Positives = 73/152 (48%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +    TEA L   F     +  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +FI  L K++    +   FS +G I   +
Sbjct:    73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG  F+ +ET+E A  A+E +NG
Sbjct:   130 VVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160

 Score = 122 (48.0 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  ++  D+ L + F  FG  LS KV  D++ G SK FGFVS+E    AQ A+  
Sbjct:   192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 121 (47.7 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D+ L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 117 (46.2 bits), Expect = 0.00096, P = 0.00096
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+FI ++ +   ++ L + F AFG +LS KV  D+  G SK +GFV +E+  +A+ AI  
Sbjct:   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157

Query:   410 MNG 412
             MNG
Sbjct:   158 MNG 160

 Score = 90 (36.7 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
 Identities = 30/163 (18%), Positives = 72/163 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ A++A+   +
Sbjct:   101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    +++ +  +  LF  +G    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++      SKG  F+ +E  E A  A++ +NGK ++ G  +
Sbjct:   220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261

 Score = 41 (19.5 bits), Expect = 0.00028, Sum P(2) = 0.00028
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query:   282 PPSGFVGSGYPAVPG--LQYP-------MPYPGGML-GHRP--LNNSPGSVSPA 323
             PPSG+  +  P        YP        P P     G RP    N PG++ PA
Sbjct:   404 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA 457


>UNIPROTKB|H3BPI5 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
            Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
        Length = 255

 Score = 122 (48.0 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  ++  D+ L + F  FG  LS KV  D++ G SK FGFVS+E    AQ A+  
Sbjct:   192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 110 (43.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
 Identities = 37/152 (24%), Positives = 73/152 (48%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDK-TTRASRCCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + I +D  T+ +S   +V     ++A+ A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +F+  L K+++   +    S +G I    
Sbjct:    73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCN 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG  F+ +ET E A  A++ +NG
Sbjct:   130 VVC-DENGSKGYGFVHFETHEAAERAIKKMNG 160


>UNIPROTKB|F1MWR2 [details] [associations]
            symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
            EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
            UniGene:Bt.3914 ProteinModelPortal:F1MWR2
            Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
            NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
        Length = 424

 Score = 193 (73.0 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 81/302 (26%), Positives = 132/302 (43%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             ++VG + + ++E  L  +F +   V   ++ KD+ T   +   FV   S ++AD A+   
Sbjct:    15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74

Query:    76 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 132
             +  K L G   P++V  A    + L+    +FIG L   + E  +   FS +G I    +
Sbjct:    75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131

Query:   133 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 188
             I+R      SKG AF+ + + + + AA+EA+NG++       P+ V +A   D++ E   
Sbjct:   132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188

Query:   189 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 248
                       N L  AD  H  LF   P    PP       +S   GL    +PP  + P
Sbjct:   189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSAPNPVVSSLGSGLPPPGMPPPGSFP 244

Query:   249 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 308
                 + PP      +  A P      G   +  P +G  G+G+P   G  +P P+P G +
Sbjct:   245 P--PVPPPGALPPGIPPAMPPPPMPPGAGGHGPPSAGTPGAGHPG-HGHSHPHPFPPGGM 301

Query:   309 GH 310
              H
Sbjct:   302 PH 303


>MGI|MGI:109580 [details] [associations]
            symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
            complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
            evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
            GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
            OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
            EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
            UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
            IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
            PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
            KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
            NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
        Length = 424

 Score = 193 (73.0 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 81/302 (26%), Positives = 132/302 (43%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             ++VG + + ++E  L  +F +   V   ++ KD+ T   +   FV   S ++AD A+   
Sbjct:    15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74

Query:    76 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 132
             +  K L G   P++V  A    + L+    +FIG L   + E  +   FS +G I    +
Sbjct:    75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131

Query:   133 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 188
             I+R      SKG AF+ + + + + AA+EA+NG++       P+ V +A   D++ E   
Sbjct:   132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188

Query:   189 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 248
                       N L  AD  H  LF   P    PP       +S   GL    +PP  + P
Sbjct:   189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSAPNPVVSSLGSGLPPPGMPPPGSFP 244

Query:   249 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 308
                 + PP      +  A P      G   +  P +G  G+G+P   G  +P P+P G +
Sbjct:   245 P--PVPPPGALPPGIPPAMPPPPMPPGAGGHGPPAAGTPGAGHPG-HGHSHPHPFPPGGM 301

Query:   309 GH 310
              H
Sbjct:   302 PH 303


>RGD|1309667 [details] [associations]
            symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
            complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
            evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
            GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
            OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
            RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
            SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
            GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
            NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
        Length = 424

 Score = 193 (73.0 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 81/302 (26%), Positives = 132/302 (43%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             ++VG + + ++E  L  +F +   V   ++ KD+ T   +   FV   S ++AD A+   
Sbjct:    15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74

Query:    76 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 132
             +  K L G   P++V  A    + L+    +FIG L   + E  +   FS +G I    +
Sbjct:    75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131

Query:   133 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 188
             I+R      SKG AF+ + + + + AA+EA+NG++       P+ V +A   D++ E   
Sbjct:   132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188

Query:   189 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 248
                       N L  AD  H  LF   P    PP       +S   GL    +PP  + P
Sbjct:   189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSAPNPVVSSLGSGLPPPGMPPPGSFP 244

Query:   249 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 308
                 + PP      +  A P      G   +  P +G  G+G+P   G  +P P+P G +
Sbjct:   245 P--PVPPPGALPPGIPPAMPPPPMPPGAGGHGPPAAGTPGAGHPG-HGHSHPHPFPPGGM 301

Query:   309 GH 310
              H
Sbjct:   302 PH 303


>RGD|1563142 [details] [associations]
            symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
            GeneTree:ENSGT00640000091232 IPI:IPI00778604
            ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
            UCSC:RGD:1563142 Uniprot:D3ZAS7
        Length = 607

 Score = 128 (50.1 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
 Identities = 37/150 (24%), Positives = 71/150 (47%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L  MF     +  + + +D  TR S    ++      +A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
              N + + G    +   + D  L R     +FI  L  ++    +   FS +G+I   +++
Sbjct:    73 -NFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVV 131

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAING 164
               ++  S+G  F+ +ET E A  A+  +NG
Sbjct:   132 Y-NEHGSRGFGFVHFETHEAAQKAINTMNG 160

 Score = 116 (45.9 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
 Identities = 24/65 (36%), Positives = 34/65 (52%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D  L   F  +G + SAKV  + +   SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSH--SKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 107 (42.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
 Identities = 22/63 (34%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+++ ++  +  +Q L + F  FG+  S KV  D + G S+ FGF+++E    AQ A+  
Sbjct:   192 NIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEEAQKAVDH 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 104 (41.7 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
 Identities = 35/156 (22%), Positives = 71/156 (45%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             +F+  +   +    L   F  F  +    ++ ++    SR   FV   + + A KA+N  
Sbjct:   101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTM 158

Query:    76 H-----NKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIK 129
             +     ++K   G     Q + A+     L    +++  L  ++ E  +  LFS +G  +
Sbjct:   159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQ 218

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
              ++++R S   S+G  F+ +E  E+A  A++ +NGK
Sbjct:   219 SVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGK 254


>UNIPROTKB|K7ES14 [details] [associations]
            symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 EMBL:AC005331 EMBL:AC006505 EMBL:AC010649
            EMBL:AC123911 HGNC:HGNC:14058 Ensembl:ENST00000588350
            Uniprot:K7ES14
        Length = 295

 Score = 187 (70.9 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 70/210 (33%), Positives = 93/210 (44%)

Query:   108 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 167
             ML K  SE +V  LF  +G I +  +LRG   +SKGCAF+K+ +  +A AA+ A++G   
Sbjct:     1 MLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQT 60

Query:   168 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYG 227
             M G+S  LVVK+ADT+KE               L       PSL   LP     PY+ Y 
Sbjct:    61 MPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT------PSL--TLPFS---PYSAYA 109

Query:   228 YQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFV 287
              QA     LMQ +   +     +  + P V            +S N  P     P SG  
Sbjct:   110 -QA-----LMQQQTTVLSTSGSY--LSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLH 161

Query:   288 GS---GYPAVPGLQYPM--------PYPGG 306
                  G  AVPGL  P+        P+PGG
Sbjct:   162 SPPLLGTTAVPGLVAPITNGFAGVVPFPGG 191

 Score = 152 (58.6 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
 Identities = 38/119 (31%), Positives = 60/119 (50%)

Query:    24 KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPG 83
             K  +E  +L +F+ F ++DE  +++     +  C FV   S  EA  A++A H  +T+PG
Sbjct:     4 KQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG 63

Query:    84 ASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQT 140
             ASS L VK+AD + ER   ++   +G L   +    ++  FS Y      Q L   Q T
Sbjct:    64 ASSSLVVKFADTDKERTLRRMQQMVGQL--GILTPSLTLPFSPYSAYA--QALMQQQTT 118

 Score = 42 (19.8 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
 Identities = 18/70 (25%), Positives = 26/70 (37%)

Query:   242 PPMQNQPGFHGIIPPVNQGNA----MRGASPDLSSNM--GPRNYAMPPSGFVGSGYPAVP 295
             PP+       G++ P+  G A      G  P L +    G   Y         + +PA  
Sbjct:   163 PPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFS 222

Query:   296 GLQ-YPMPYP 304
             G+Q Y   YP
Sbjct:   223 GVQQYTAMYP 232


>UNIPROTKB|B1AM48 [details] [associations]
            symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
            HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
            Ensembl:ENST00000440102 Uniprot:B1AM48
        Length = 189

 Score = 158 (60.7 bits), Expect = 6.8e-11, P = 6.8e-11
 Identities = 42/156 (26%), Positives = 84/156 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L V  +P++MT+ +L ++F     ++   +++DK T  S    FV     ++A+KA+
Sbjct:    38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97

Query:    73 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +  +     +  ++V YA      + +  L++  LPK +++ E+  LFS YG I   
Sbjct:    98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154

Query:   132 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGK 165
             +IL   Q T  S+G  F++++ + +A  A++ +NG+
Sbjct:   155 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189

 Score = 128 (50.1 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             ANL++  +P+    +EL   F  +GR++++++ VD+ TG+S+  GF+ ++    A+ AI 
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184

Query:   409 MMNG 412
              +NG
Sbjct:   185 GLNG 188

 Score = 124 (48.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL + ++PQ    +EL + F + G + S K+  DK TG S  +GFV+Y  P  A+ AI  
Sbjct:    40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99

Query:   410 MNG 412
             +NG
Sbjct:   100 LNG 102

 Score = 88 (36.0 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
 Identities = 25/94 (26%), Positives = 44/94 (46%)

Query:    73 NACHNKKTLPG-ASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N  +   T+    SSP+      G  E  +  L +  LP+N+++ E+ +LF   G I+  
Sbjct:    13 NTANGPTTINNNCSSPVD----SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESC 68

Query:   132 QILRGS-QQTSKGCAFLKYETKEQALAALEAING 164
             +++R      S G  F+ Y   + A  A+  +NG
Sbjct:    69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102


>UNIPROTKB|D4AC21 [details] [associations]
            symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
            ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
            ArrayExpress:D4AC21 Uniprot:D4AC21
        Length = 588

 Score = 126 (49.4 bits), Expect = 8.8e-05, P = 8.8e-05
 Identities = 28/63 (44%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  +E  D+ L   F  FG+ LS KV  D  +G SK FGFVSYE    A  A+  
Sbjct:   121 NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEE 179

Query:   410 MNG 412
             MNG
Sbjct:   180 MNG 182

 Score = 125 (49.1 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL+I ++     D++L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   222 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 279

Query:   408 AMMNG 412
               MNG
Sbjct:   280 TEMNG 284

 Score = 118 (46.6 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
 Identities = 38/163 (23%), Positives = 74/163 (45%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ A+KA+   +
Sbjct:    30 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMN 88

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    + V +  +  LFS +G    
Sbjct:    89 GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLS 148

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++R     SKG  F+ YE  E A  A+E +NGK +M G S+
Sbjct:   149 VKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGK-EMSGKSI 190


>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
            symbol:pabpc1a "poly A binding protein,
            cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
            EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
            UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
            GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
            NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
        Length = 634

 Score = 123 (48.4 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
 Identities = 39/150 (26%), Positives = 68/150 (45%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
              N   + G    +     D  L +     +FI  L K++    +   FS +G I   +++
Sbjct:    73 -NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAING 164
                +  SKG  F+ +ET E A  A+E +NG
Sbjct:   132 C-DENGSKGYGFVHFETHEAAERAIEKMNG 160

 Score = 121 (47.7 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D+ L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 112 (44.5 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  ++  D++L   F  +G  LS +V  D + G SK FGFVS+E    AQ A+  
Sbjct:   192 NVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDS-GKSKGFGFVSFERHEDAQRAVDE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 97 (39.2 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 32/163 (19%), Positives = 72/163 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   + + A++A+   +
Sbjct:   101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    +++ + ++  +F  YG    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++      SKG  F+ +E  E A  A++ +NGK +M G  V
Sbjct:   220 IRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGK-EMNGKQV 261


>UNIPROTKB|P20965 [details] [associations]
            symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
            species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
            initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
            self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
            EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
            ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
            KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
        Length = 633

 Score = 124 (48.7 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
 Identities = 38/150 (25%), Positives = 70/150 (46%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG + + +TEA L   F     +  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
              N   + G    +     D  L +     +FI  L K++    +   FS +G I   +++
Sbjct:    73 -NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAING 164
                +  SKG  F+ +ET+E A  A++ +NG
Sbjct:   132 C-DENGSKGYGFVHFETQEAAERAIDKMNG 160

 Score = 119 (46.9 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D+ L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 114 (45.2 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
 Identities = 26/63 (41%), Positives = 34/63 (53%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +   +  D+ L   F  +G  LS KV  D   G SK FGFVS+E    AQ A+  
Sbjct:   192 NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 96 (38.9 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
 Identities = 32/163 (19%), Positives = 73/163 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ A++A++  +
Sbjct:   101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I     ++++  +  +F  YG    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++      SKG  F+ +E  E A  A++ +NGK  M G S+
Sbjct:   220 VKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKD-MNGKSM 261

 Score = 44 (20.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 18/54 (33%), Positives = 25/54 (46%)

Query:   276 PRNY---AMPPSGFVGSGYPAVPG-LQYPMPYPGGML-GHRP--LNNSPGSVSP 322
             P +Y   A+PP+    + YP  PG +    P P     G RP    N PG++ P
Sbjct:   403 PSSYFMAAIPPAQNRAAYYP--PGQIAQLRPSPRWTAQGARPHPFQNMPGAIRP 454


>RGD|1310759 [details] [associations]
            symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
            RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
            GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
            OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
        Length = 630

 Score = 123 (48.4 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
 Identities = 28/63 (44%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +      D+ L   F  FG+VLS KV  D+  G SK FGFVS+E    AQ A+  
Sbjct:   192 NVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 120 (47.3 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
 Identities = 41/152 (26%), Positives = 72/152 (47%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + + +D  TR S     V      +A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L R     +FI  L K +    +   FS +G I   +
Sbjct:    73 -NFDVIKG--KPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG  F+ +ET+E A  A+E +NG
Sbjct:   130 VVC-DENGSKGHGFVHFETEEAAERAIEKMNG 160

 Score = 116 (45.9 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
 Identities = 25/65 (38%), Positives = 35/65 (53%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D+ L   F  FG + S KV  +   G SK FGFV + SP  A  A+
Sbjct:   293 GINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
             + MNG
Sbjct:   351 SEMNG 355

 Score = 87 (35.7 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
 Identities = 30/163 (18%), Positives = 70/163 (42%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+        FV   + + A++A+   +
Sbjct:   101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENGSKGHG-FVHFETEEAAERAIEKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I      + +  ++ LF  +G +  
Sbjct:   160 GMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++      SKG  F+ +E  E A  A++ +NGK ++ G  +
Sbjct:   220 VKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKHI 261


>UNIPROTKB|Q6IP09 [details] [associations]
            symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
            species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
            "eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
            "protein self-association" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
            GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
            UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
            GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
            Uniprot:Q6IP09
        Length = 633

 Score = 123 (48.4 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
 Identities = 39/152 (25%), Positives = 74/152 (48%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + + +D  TR S    +V      +A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +FI  L K++    +   FS +G I   +
Sbjct:    73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG  F+ +ET+E A  A++ +NG
Sbjct:   130 VVC-DENGSKGYGFVHFETQEAAERAIDKMNG 160

 Score = 120 (47.3 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D+ L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 108 (43.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
 Identities = 25/63 (39%), Positives = 35/63 (55%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  ++  D+ L   F  +G  LS KV  D   G S+ FGFVS+E    AQ A+  
Sbjct:   192 NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDD 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 86 (35.3 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
 Identities = 29/163 (17%), Positives = 72/163 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ A++A++  +
Sbjct:   101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    +++ +  +   F  YG    
Sbjct:   160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++      S+G  F+ +E  E A  A++ +NGK  + G ++
Sbjct:   220 VKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKD-LNGKAI 261


>UNIPROTKB|Q6DEY7 [details] [associations]
            symbol:epabp "Embryonic polyadenylate-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
            evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
            evidence=ISS] [GO:0043009 "chordate embryonic development"
            evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
            eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
            ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
            GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
            HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
            Uniprot:Q6DEY7
        Length = 629

 Score = 127 (49.8 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
 Identities = 27/63 (42%), Positives = 39/63 (61%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  ++  D+ L   F AFG  LS KV +D  TG S+ FGFV+Y +   AQ A++ 
Sbjct:   192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 115 (45.5 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
 Identities = 36/152 (23%), Positives = 75/152 (49%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + + +D  TR S    ++      +A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N + + G   P+++ ++  D  L +     +FI  L +++    +   FS +G I   +
Sbjct:    73 -NFEVIKGR--PIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  S+G  F+ +ET+E A  A++ +NG
Sbjct:   130 VVC-DEHGSRGYGFVHFETQEAANRAIQTMNG 160

 Score = 115 (45.5 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
 Identities = 25/65 (38%), Positives = 34/65 (52%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D  L   F  +G + SAKV  +   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 78 (32.5 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
 Identities = 28/156 (17%), Positives = 69/156 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             +F+  + + +    L   F  F  +    ++ D+    SR   FV   +++ A++A+   
Sbjct:   101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTM 158

Query:    76 H-----NKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIK 129
             +     ++K   G     + +  +   + +E   ++I    +++ +  +  +FS +G   
Sbjct:   159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTL 218

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
              ++++      S+G  F+ Y   E+A  A+  +NGK
Sbjct:   219 SVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGK 254


>RGD|1559517 [details] [associations]
            symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
            CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
            UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
            KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
        Length = 370

 Score = 129 (50.5 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +   +  D+ L + F  +G+ LS KV  D A+G SK FGFVS++S  +A+NA+  
Sbjct:   191 NVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKD-ASGKSKRFGFVSFDSHKAAKNAVED 249

Query:   410 MNG 412
             MNG
Sbjct:   250 MNG 252

 Score = 105 (42.0 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
 Identities = 40/151 (26%), Positives = 68/151 (45%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT-RASRCCFVICPSRQEADKAVNAC 75
             L+VG + + +TE  L   F     V  + I +D  + R+    +V      +A KA+   
Sbjct:    12 LYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALETM 71

Query:    76 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
              N   + G S  L     D  L +     +FI  L K++    +   FS +G I   +++
Sbjct:    72 -NFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVM 130

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAINGK 165
                ++ SKG  F+ Y+ +  A  A+E +NGK
Sbjct:   131 T-DEEGSKGYGFVHYQDQRAADRAIEEMNGK 160

 Score = 101 (40.6 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
 Identities = 24/71 (33%), Positives = 35/71 (49%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             +I     A L+I ++     D+ L   F  FG +   KV  +   G SK FG + + SP 
Sbjct:   286 RIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQE--AGQSKGFGLICFFSPE 343

Query:   402 SAQNAIAMMNG 412
             +A  A+A MNG
Sbjct:   344 AAAKAMAEMNG 354

 Score = 84 (34.6 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
 Identities = 33/163 (20%), Positives = 71/163 (43%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV    ++ AD+A+   +
Sbjct:   100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMN 158

Query:    77 NKKTLPGASSPLQVKYA-DGELERLEHKL-FIGMLPKN----VSEAEVSALFSIYGTIKD 130
              K          + K   D E E  E    F  +  KN    + +  + ++FS YG    
Sbjct:   159 GKLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLS 218

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             +++++ +   SK   F+ +++ + A  A+E +NG+  + G ++
Sbjct:   219 VKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRD-INGQTI 260


>UNIPROTKB|A4QUF0 [details] [associations]
            symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
            nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
            EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
            SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
            KEGG:mgr:MGG_09505 Uniprot:A4QUF0
        Length = 762

 Score = 140 (54.3 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
 Identities = 38/150 (25%), Positives = 68/150 (45%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG++   +TEA L  +F +   V  + + +D  TR S    +V   +  + +KA+   
Sbjct:    63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122

Query:    76 HNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
              N   + G    +     D  L +  +  +FI  L   +    +   F+ +G I   ++ 
Sbjct:   123 -NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVA 181

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAING 164
             +     SKG  F+ YET E A  A++ +NG
Sbjct:   182 QDENGNSKGYGFVHYETDEAASQAIKHVNG 211

 Score = 102 (41.0 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+++ +I  E  D E    F+ +G V S+ +  D+ TG S+ FGFV++ S   A  A+  
Sbjct:   243 NIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQE 302

Query:   410 MN 411
             +N
Sbjct:   303 LN 304

 Score = 77 (32.2 bits), Expect = 8.8e-12, Sum P(3) = 8.8e-12
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT 386
             G NL+I ++  E  D++L   F  FG + SAKV  D  T
Sbjct:   345 GVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSIT 383

 Score = 77 (32.2 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
 Identities = 31/139 (22%), Positives = 61/139 (43%)

Query:    35 FKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKA---VNAC--HNKKTLPGASSPLQ 89
             F  F  +    + +D+   +    FV   + + A +A   VN    + KK   G   P +
Sbjct:   169 FAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK 228

Query:    90 VKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAF 146
              + +   E++     +++  +   V++ E   LF  YG +    + R  Q+T  S+G  F
Sbjct:   229 DRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLAR-DQETGKSRGFGF 287

Query:   147 LKYETKEQALAALEAINGK 165
             + + + E A  A++ +N K
Sbjct:   288 VNFTSHEDASKAVQELNEK 306

 Score = 69 (29.3 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 33/122 (27%), Positives = 42/122 (34%)

Query:   209 PSLFGALPMGYAPPYNGYGYQASG---SYGLMQYRLP----PMQNQPGFHGIIPPVNQGN 261
             P   G  P G+A    G G    G    YGL     P    P  N P F   +  + Q +
Sbjct:   538 PGRPGQFPAGFAAQQGGRGAMPQGIPPMYGLPGQFPPQGPFPQPNNPQFLAAMQQIQQ-S 596

Query:   262 AMRGASPDLSSNMGPRNYAMPPSGFVG-SGYPAVPG---LQYPMPYPGGMLGHRPLNNSP 317
             A+ G      +  GP    +P  G  G +G P  P     Q P    G   G  P     
Sbjct:   597 ALAGGRGG-PAGRGPMQGGVPVPGMPGGAGLPGFPPNARQQGPGAGRGAAAGRAPAGAPA 655

Query:   318 GS 319
             G+
Sbjct:   656 GA 657

 Score = 64 (27.6 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
 Identities = 37/125 (29%), Positives = 48/125 (38%)

Query:   213 GALPMGYAPPYN-GYGYQAS-GSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDL 270
             G +PM    P     G+ A  G  G M   +PPM   PG     PP  QG   +  +P  
Sbjct:   532 GGMPMQPGRPGQFPAGFAAQQGGRGAMPQGIPPMYGLPGQ---FPP--QGPFPQPNNPQF 586

Query:   271 SSNMGP-RNYAMPPS--GFVGSGYPAVPGLQYP-MPYPGGMLGHRP--LNNSPGSVSPAV 324
              + M   +  A+     G  G G P   G+  P MP   G+ G  P      PG+   A 
Sbjct:   587 LAAMQQIQQSALAGGRGGPAGRG-PMQGGVPVPGMPGGAGLPGFPPNARQQGPGAGRGAA 645

Query:   325 ANSNP 329
             A   P
Sbjct:   646 AGRAP 650

 Score = 62 (26.9 bits), Expect = 8.8e-12, Sum P(3) = 8.8e-12
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query:   387 GVSKCFGFVSYESPASAQNAIAMMN 411
             G SK FGFV + +P  A  A+A MN
Sbjct:   430 GKSKGFGFVCFANPDDATKAVAEMN 454

 Score = 46 (21.3 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query:   202 PNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 249
             PNA  Q P        G AP     G + +G+   +Q +L  + + PG
Sbjct:   631 PNARQQGPGAGRGAAAGRAPAGAPAGARGAGAPEGLQGQLAAVADNPG 678

 Score = 40 (19.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
 Identities = 13/32 (40%), Positives = 14/32 (43%)

Query:   281 MPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRP 312
             MPP+G  G  YP     Q  MP   G  G  P
Sbjct:   519 MPPAGGRGMPYP-----QGGMPMQPGRPGQFP 545


>UNIPROTKB|E9PSH0 [details] [associations]
            symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006376 "mRNA splice
            site selection" evidence=IEA] [GO:0007286 "spermatid development"
            evidence=IEA] [GO:0031369 "translation initiation factor binding"
            evidence=IEA] [GO:0040018 "positive regulation of multicellular
            organism growth" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 EMBL:AC090559
            HGNC:HGNC:2549 ChiTaRS:CELF1 GO:GO:0006376 IPI:IPI00984001
            ProteinModelPortal:E9PSH0 SMR:E9PSH0 Ensembl:ENST00000530151
            ArrayExpress:E9PSH0 Bgee:E9PSH0 Uniprot:E9PSH0
        Length = 95

 Score = 169 (64.5 bits), Expect = 4.3e-12, P = 4.3e-12
 Identities = 32/80 (40%), Positives = 53/80 (66%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQVP+  +E  L  +F+++  V E+N+++D++    ++  CCFV   +R+ A +A
Sbjct:    16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75

Query:    72 VNACHNKKTLPGASSPLQVK 91
              NA HN K LPG   P+Q+K
Sbjct:    76 QNALHNMKVLPGMHHPIQMK 95

 Score = 130 (50.8 bits), Expect = 7.7e-08, P = 7.7e-08
 Identities = 26/79 (32%), Positives = 45/79 (56%)

Query:   103 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAAL 159
             K+F+G +P+  SE ++  LF  YG + ++ +LR   Q    SKGC F+ + T++ AL A 
Sbjct:    17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76

Query:   160 EAINGKHKMEGSSVPLVVK 178
              A++    + G   P+ +K
Sbjct:    77 NALHNMKVLPGMHHPIQMK 95


>UNIPROTKB|H0Y5F5 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
            Ensembl:ENST00000421687 Uniprot:H0Y5F5
        Length = 550

 Score = 125 (49.1 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL+I ++     D++L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   195 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 252

Query:   408 AMMNG 412
               MNG
Sbjct:   253 TEMNG 257

 Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
 Identities = 28/63 (44%), Positives = 35/63 (55%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  +E  D+ L   F  FG+ LS KV  D   G SK FGFVSYE    A  A+  
Sbjct:    94 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEE 152

Query:   410 MNG 412
             MNG
Sbjct:   153 MNG 155

 Score = 114 (45.2 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
 Identities = 36/155 (23%), Positives = 69/155 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ ADKA+   +
Sbjct:     3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 61

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    + V +  +  LFS +G    
Sbjct:    62 GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLS 121

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
             ++++R     SKG  F+ YE  E A  A+E +NGK
Sbjct:   122 VKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK 156


>UNIPROTKB|Q96B58 [details] [associations]
            symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
            protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
            HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
            ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
            Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
        Length = 214

 Score = 118 (46.6 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
 Identities = 25/63 (39%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             ++F+  +  E   +++  AF  FGR+  A+V  D ATG SK +GFVS+ +   A+NAI  
Sbjct:   107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166

Query:   410 MNG 412
             M G
Sbjct:   167 MGG 169

 Score = 105 (42.0 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
 Identities = 27/85 (31%), Positives = 46/85 (54%)

Query:    98 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 157
             + +   L++G L ++V+EA +  LFS  G  K+ +++  +      C F+++     A A
Sbjct:     3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61

Query:   158 ALEAINGKHKMEGSSVPLVVKWADT 182
             AL A+NG+ K+ G  V   V WA T
Sbjct:    62 ALAAMNGR-KIMGKEVK--VNWATT 83


>UNIPROTKB|H3BNY3 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
            HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
            Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
        Length = 347

 Score = 122 (48.0 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  ++  D+ L + F  FG  LS KV  D++ G SK FGFVS+E    AQ A+  
Sbjct:   192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 110 (43.8 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
 Identities = 37/152 (24%), Positives = 73/152 (48%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDK-TTRASRCCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + I +D  T+ +S   +V     ++A+ A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +F+  L K+++   +    S +G I    
Sbjct:    73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCN 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG  F+ +ET E A  A++ +NG
Sbjct:   130 VVC-DENGSKGYGFVHFETHEAAERAIKKMNG 160

 Score = 99 (39.9 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
 Identities = 22/54 (40%), Positives = 31/54 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASA 403
             NL++ ++     D+ L  AF  FG + SAKV ++   G SK FGFV + SP  A
Sbjct:   295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346

 Score = 89 (36.4 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
 Identities = 31/163 (19%), Positives = 70/163 (42%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +FV  + K +    L      F  +   N++ D+   +    FV   + + A++A+   +
Sbjct:   101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMN 159

Query:    77 N-----KKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                   +K   G     + + A+ G   +    ++I    +++ +  +  LF  +G    
Sbjct:   160 GMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++      SKG  F+ +E  E A  A++ +NGK ++ G  +
Sbjct:   220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261


>UNIPROTKB|E2R5T2 [details] [associations]
            symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
            CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
            ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
            KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
        Length = 424

 Score = 187 (70.9 bits), Expect = 7.6e-12, P = 7.6e-12
 Identities = 80/302 (26%), Positives = 131/302 (43%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             ++VG + + ++E  L  +F +   V   ++ KD+ T   +   FV   S ++AD A+   
Sbjct:    15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74

Query:    76 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 132
             +  K L G   P++V  A    + L+    +FIG L   + E  +   FS +G I    +
Sbjct:    75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131

Query:   133 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 188
             I+R      SKG AF+ + + + + AA+EA+NG++       P+ V +A   D++ E   
Sbjct:   132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188

Query:   189 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 248
                       N L  AD  H  LF   P    PP       +S   GL    +PP  + P
Sbjct:   189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSAPNPVVSSLGSGLPPPGMPPPGSFP 244

Query:   249 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 308
                 + PP      +  A P      G   +  P +G  G+G+P   G  +P P+P   +
Sbjct:   245 P--PVPPPGALPPGIPPAMPPPPMPPGAGGHGPPSAGTPGAGHPG-HGHSHPHPFPPSGM 301

Query:   309 GH 310
              H
Sbjct:   302 PH 303


>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
            symbol:pabpc1l "poly(A) binding protein,
            cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
            HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
            UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
            GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
            Bgee:Q803E7 Uniprot:Q803E7
        Length = 620

 Score = 121 (47.7 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
 Identities = 26/71 (36%), Positives = 39/71 (54%)

Query:   342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 401
             +I+   G NL++ ++     D++L   F  +G + SAKV  D   G S+ FGFV + SP 
Sbjct:   287 RIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDG--GHSRGFGFVCFSSPE 344

Query:   402 SAQNAIAMMNG 412
              A  A+  MNG
Sbjct:   345 EATKAVTEMNG 355

 Score = 117 (46.2 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
 Identities = 37/152 (24%), Positives = 74/152 (48%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + + +D  TR S    ++      +A+ A++  
Sbjct:    13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N + + G   P+++ ++  D  L +     +FI  + +++    +   FS +G I   +
Sbjct:    73 -NYEVIKGR--PIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG  F+ +ET+E A  A+E +NG
Sbjct:   130 VVC-DENGSKGYGFVHFETQEAANRAIETMNG 160

 Score = 104 (41.7 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
 Identities = 22/63 (34%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  ++   ++L N F  FG+ LS  V  D+  G S+ FGFV++ +   A+ A+  
Sbjct:   192 NVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDER-GRSRGFGFVNFVNHGDARRAVTE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 63 (27.2 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
 Identities = 24/155 (15%), Positives = 67/155 (43%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + + +    L   F  F  +    ++ D+   +    FV   +++ A++A+   +
Sbjct:   101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMN 159

Query:    77 -----NKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+   + +E   ++I    +++   ++  +F+ +G    
Sbjct:   160 GMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
             + ++   +  S+G  F+ +     A  A+  +NGK
Sbjct:   220 VCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGK 254


>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
            symbol:PFL1170w "polyadenylate-binding protein,
            putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
            ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
            MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
            KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
            ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
        Length = 875

 Score = 144 (55.7 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
 Identities = 39/150 (26%), Positives = 71/150 (47%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG + + +TEA L  +F     V  + + +D  TR S    +V   +  +A++A++  
Sbjct:    18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77

Query:    76 HNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
              N   + G  + L   + D  L +     +F+  L K++    +   FS++G I   ++ 
Sbjct:    78 -NYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVA 136

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAING 164
                   SK   F+ YE +E A  A+E +NG
Sbjct:   137 TDEFGKSKSYGFVHYEDEESAKEAIEKVNG 166

 Score = 119 (46.9 bits), Expect = 0.00087, P = 0.00087
 Identities = 25/63 (39%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+F+ ++ +   ++ L + F  FG +LS KV  D+  G SK +GFV YE   SA+ AI  
Sbjct:   105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEF-GKSKSYGFVHYEDEESAKEAIEK 163

Query:   410 MNG 412
             +NG
Sbjct:   164 VNG 166

 Score = 96 (38.9 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL+I ++     D  L   F+ FG + SAKV  D+    SK FGFV + S   A  A+
Sbjct:   449 GVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQ-SKGFGFVCFASQEEANKAV 507

Query:   408 AMMN 411
               M+
Sbjct:   508 TEMH 511

 Score = 93 (37.8 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
 Identities = 34/153 (22%), Positives = 64/153 (41%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +FV  + K +    L   F  F  +    +  D+  ++    FV     + A +A+   +
Sbjct:   106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVN 165

Query:    77 NKKTLPGASS----PLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
               +   G+ +    P   K      +     L++   P +V+E  +  LF+ YG I  + 
Sbjct:   166 GVQL--GSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSM- 222

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
             I++   +  K C F+ Y   E A  A++ +NGK
Sbjct:   223 IVKMDNKNRKFC-FINYADAESAKNAMDNLNGK 254

 Score = 78 (32.5 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL++ + P    +  L   F  +G + S  V +D     ++ F F++Y    SA+NA+  
Sbjct:   194 NLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNK---NRKFCFINYADAESAKNAMDN 250

Query:   410 MNG 412
             +NG
Sbjct:   251 LNG 253


>UNIPROTKB|Q8I5H4 [details] [associations]
            symbol:PFL1170w "Polyadenylate-binding protein, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
            "poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
            ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
            MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
            KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
            ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
        Length = 875

 Score = 144 (55.7 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
 Identities = 39/150 (26%), Positives = 71/150 (47%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG + + +TEA L  +F     V  + + +D  TR S    +V   +  +A++A++  
Sbjct:    18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77

Query:    76 HNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
              N   + G  + L   + D  L +     +F+  L K++    +   FS++G I   ++ 
Sbjct:    78 -NYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVA 136

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAING 164
                   SK   F+ YE +E A  A+E +NG
Sbjct:   137 TDEFGKSKSYGFVHYEDEESAKEAIEKVNG 166

 Score = 119 (46.9 bits), Expect = 0.00087, P = 0.00087
 Identities = 25/63 (39%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+F+ ++ +   ++ L + F  FG +LS KV  D+  G SK +GFV YE   SA+ AI  
Sbjct:   105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEF-GKSKSYGFVHYEDEESAKEAIEK 163

Query:   410 MNG 412
             +NG
Sbjct:   164 VNG 166

 Score = 96 (38.9 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL+I ++     D  L   F+ FG + SAKV  D+    SK FGFV + S   A  A+
Sbjct:   449 GVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQ-SKGFGFVCFASQEEANKAV 507

Query:   408 AMMN 411
               M+
Sbjct:   508 TEMH 511

 Score = 93 (37.8 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
 Identities = 34/153 (22%), Positives = 64/153 (41%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +FV  + K +    L   F  F  +    +  D+  ++    FV     + A +A+   +
Sbjct:   106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVN 165

Query:    77 NKKTLPGASS----PLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
               +   G+ +    P   K      +     L++   P +V+E  +  LF+ YG I  + 
Sbjct:   166 GVQL--GSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSM- 222

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
             I++   +  K C F+ Y   E A  A++ +NGK
Sbjct:   223 IVKMDNKNRKFC-FINYADAESAKNAMDNLNGK 254

 Score = 78 (32.5 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL++ + P    +  L   F  +G + S  V +D     ++ F F++Y    SA+NA+  
Sbjct:   194 NLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNK---NRKFCFINYADAESAKNAMDN 250

Query:   410 MNG 412
             +NG
Sbjct:   251 LNG 253


>UNIPROTKB|E2R9I1 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
            InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
            Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
        Length = 700

 Score = 125 (49.1 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL+I ++     D++L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   333 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 390

Query:   408 AMMNG 412
               MNG
Sbjct:   391 TEMNG 395

 Score = 125 (49.1 bits), Expect = 0.00014, P = 0.00014
 Identities = 28/63 (44%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  +E  D+ L   F  FG+ LS KV  D + G SK FGFVSYE    A  A+  
Sbjct:   232 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEE 290

Query:   410 MNG 412
             MNG
Sbjct:   291 MNG 293

 Score = 114 (45.2 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
 Identities = 36/155 (23%), Positives = 69/155 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ ADKA+   +
Sbjct:   141 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 199

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    + V +  +  LFS +G    
Sbjct:   200 GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLS 259

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
             ++++R     SKG  F+ YE  E A  A+E +NGK
Sbjct:   260 VKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGK 294

 Score = 48 (22.0 bits), Expect = 0.00085, Sum P(2) = 0.00085
 Identities = 22/72 (30%), Positives = 30/72 (41%)

Query:   252 GIIPPVNQGNAMRGASPDLSSN-MGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGH 310
             G +P   Q  A R A    +   + P  YA      V S +PA+  LQ P P    + G 
Sbjct:   553 GGVPTAVQTLAPRAAVAAAAPRAVAPYKYASS----VRSPHPAIQPLQAPQPAVH-VQGQ 607

Query:   311 RPLNNSPGSVSP 322
              PL  S  + +P
Sbjct:   608 EPLTASMLAAAP 619


>UNIPROTKB|E1BWJ7 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
            EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
            RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
            Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
            OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
        Length = 632

 Score = 128 (50.1 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
 Identities = 28/63 (44%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +   +  D  L   F  FG+ LS KV +D  TG SK FGFV++E    AQ A+A 
Sbjct:   192 NVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDH-TGRSKGFGFVNFEKHEEAQKAVAD 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 117 (46.2 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
 Identities = 25/65 (38%), Positives = 35/65 (53%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D+ L   F  +G + SAKV  +   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 109 (43.4 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
 Identities = 34/150 (22%), Positives = 69/150 (46%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + + +D  +R S    ++      +A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
              N + + G    +     D  L +     +FI  L  ++    +   FS +G I   +++
Sbjct:    73 -NFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVV 131

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAING 164
                +  S+G  F+ +ET+E A  A++ +NG
Sbjct:   132 C-DENGSRGHGFVHFETQEAATRAIQTMNG 160

 Score = 77 (32.2 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
 Identities = 30/163 (18%), Positives = 69/163 (42%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  +   +    L   F  F  +    ++ D+        FV   +++ A +A+   +
Sbjct:   101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHG-FVHFETQEAATRAIQTMN 159

Query:    77 -----NKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+     +E   ++I     ++ +  +  +FS +G    
Sbjct:   160 GMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++      SKG  F+ +E  E+A  A+  +NGK ++ G  V
Sbjct:   220 VKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGK-EINGRMV 261


>UNIPROTKB|Q98SP8 [details] [associations]
            symbol:epabp-a "Embryonic polyadenylate-binding protein A"
            species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
            initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
            embryonic development" evidence=IEP] [GO:0043621 "protein
            self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
            HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
            RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
            SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
            Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
        Length = 629

 Score = 123 (48.4 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
 Identities = 26/63 (41%), Positives = 39/63 (61%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  ++  D+ L   F AFG  LS KV +D + G S+ FGFV+Y +   AQ A++ 
Sbjct:   192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDS-GRSRGFGFVNYGNHEEAQKAVSE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 113 (44.8 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
 Identities = 35/152 (23%), Positives = 74/152 (48%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRC-CFVICPSRQEADKAVNAC 75
             L++G +   +TEA L   F     +  + + +D  TR S    ++      +A++A++  
Sbjct:    13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N + + G   P+++ ++  D  L +     +FI  L +++    +   FS +G I   +
Sbjct:    73 -NFEVIKGR--PIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  S+G  F+ +ET E A  A++ +NG
Sbjct:   130 VVC-DEHGSRGYGFVHFETHEAANRAIQTMNG 160

 Score = 113 (44.8 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
 Identities = 25/65 (38%), Positives = 34/65 (52%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D  L   F  +G + SAKV  +   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 78 (32.5 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
 Identities = 28/156 (17%), Positives = 68/156 (43%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             +F+  + + +    L   F  F  +    ++ D+    SR   FV   + + A++A+   
Sbjct:   101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTM 158

Query:    76 H-----NKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIK 129
             +     ++K   G     + +  +   + +E   ++I    +++ +  +  +FS +G   
Sbjct:   159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTL 218

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
              ++++      S+G  F+ Y   E+A  A+  +NGK
Sbjct:   219 SVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGK 254


>ASPGD|ASPL0000010999 [details] [associations]
            symbol:fabM species:162425 "Emericella nidulans"
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
            GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
            EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
            STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
            GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
            Uniprot:Q5B630
        Length = 732

 Score = 129 (50.5 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
 Identities = 37/150 (24%), Positives = 66/150 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG++   +TEA L  +F     V  + + +D  TR S    +V        ++A++  
Sbjct:    44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103

Query:    76 HNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
              N   + G    +     D  L +  +  +FI  L   +    +   F+ +G I   ++ 
Sbjct:   104 -NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVA 162

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAING 164
             +     SKG  F+ YET E A  A++ +NG
Sbjct:   163 QDEFGVSKGYGFVHYETAEAANNAIKHVNG 192

 Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
 Identities = 28/63 (44%), Positives = 40/63 (63%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+FI ++     ++ L + F AFG +LS KV  D+  GVSK +GFV YE+  +A NAI  
Sbjct:   131 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKH 189

Query:   410 MNG 412
             +NG
Sbjct:   190 VNG 192

 Score = 106 (42.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +I  E  D+E    F+ FG + SA +  D + G S+ FGFV++ +  SAQ A+  
Sbjct:   224 NIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRD-SEGKSRGFGFVNFSTHESAQAAVEE 282

Query:   410 MN 411
             MN
Sbjct:   283 MN 284

 Score = 96 (38.9 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
 Identities = 48/189 (25%), Positives = 70/189 (37%)

Query:   141 SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNN 200
             SKG  F+ + + ++A  A+  +N +  + G   PL V  A   K+             NN
Sbjct:   416 SKGFGFVCFSSPDEASKAVTEMN-QRMVNGK--PLYVALAQ-RKDVRRSQLEASIQARNN 471

Query:   201 LPNADSQHPSLFGALPMG----YAPPYNGY--GYQASGSYGLMQYRLPPMQNQPG-FHGI 253
             +    +   +  G   M     Y P   G+  G Q  G +      +  M  +PG + G 
Sbjct:   472 IRQQQAAAAAGMGQAYMAPAVFYGPGQQGFIPGAQRGGMFPPQPGMMMGMPGRPGQYPGP 531

Query:   254 IPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPL 313
              P   QG   RG  P+    + P    +P     G G P   G+ YPM   G   G R  
Sbjct:   532 FPG-QQGG--RGVGPN--QQIPPNFQGLPMGAMQGPGIPN--GMGYPM-VQGQFGGGRGR 583

Query:   314 NNSPGSVSP 322
                PG   P
Sbjct:   584 GQVPGMGGP 592

 Score = 92 (37.4 bits), Expect = 7.8e-06, Sum P(3) = 7.8e-06
 Identities = 37/157 (23%), Positives = 67/157 (42%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKA---VN 73
             +F+  +   +    L   F  F  +    + +D+   +    FV   + + A+ A   VN
Sbjct:   132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVN 191

Query:    74 AC--HNKKTLPG---ASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTI 128
                 ++KK   G   +    Q K+   E++     ++I  +   V + E   LF  +G I
Sbjct:   192 GMLLNDKKVFVGHHISKKDRQSKFE--EMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEI 249

Query:   129 KDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
                 + R S+  S+G  F+ + T E A AA+E +N K
Sbjct:   250 TSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDK 286

 Score = 72 (30.4 bits), Expect = 0.00030, Sum P(2) = 0.00030
 Identities = 30/155 (19%), Positives = 65/155 (41%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +++  +   + + +   +F++F  +    + +D   ++    FV   + + A  AV   +
Sbjct:   225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284

Query:    77 NK-----KTLPGASSP-------LQVKYADGELERLEH----KLFIGMLPKNVSEAEVSA 120
             +K     K   G +         L+ +Y    +E+        L++  L  +V + ++  
Sbjct:   285 DKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRE 344

Query:   121 LFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQA 155
             LF  YGTI   +++R +       A  + ETKE A
Sbjct:   345 LFGPYGTITSAKVMRDTAPVET--ATPESETKESA 377

 Score = 66 (28.3 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query:   384 KATGVSKCFGFVSYESPASAQNAIAMMN 411
             K  G SK FGFV + SP  A  A+  MN
Sbjct:   411 KPLGKSKGFGFVCFSSPDEASKAVTEMN 438

 Score = 66 (28.3 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKA 385
             G NL++ ++  +  D +L   F  +G + SAKV  D A
Sbjct:   325 GVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTA 362


>UNIPROTKB|C9JTN7 [details] [associations]
            symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
            EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
            ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
            Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
            Uniprot:C9JTN7
        Length = 285

 Score = 120 (47.3 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
 Identities = 37/155 (23%), Positives = 74/155 (47%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             L+VG + + +TEA +L +F +        +I D T      CFV     + A  A+ A +
Sbjct:     9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDPYCFVEFHEHRHAAAALAAMN 67

Query:    77 NKKTLPGASSPLQVKYA----DGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
              +K +      ++V +A      + +   H  +F+G L   ++  ++ A F+ +G I D 
Sbjct:    68 GRKIM---GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 124

Query:   132 QILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 165
             ++++  +   SKG  F+ +  K  A  A++ + G+
Sbjct:   125 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 159

 Score = 118 (46.6 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
 Identities = 25/63 (39%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             ++F+  +  E   +++  AF  FGR+  A+V  D ATG SK +GFVS+ +   A+NAI  
Sbjct:    96 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 155

Query:   410 MNG 412
             M G
Sbjct:   156 MGG 158

 Score = 105 (42.0 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
 Identities = 27/85 (31%), Positives = 46/85 (54%)

Query:    98 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 157
             + +   L++G L ++V+EA +  LFS  G  K+ +++  +      C F+++     A A
Sbjct:     3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61

Query:   158 ALEAINGKHKMEGSSVPLVVKWADT 182
             AL A+NG+ K+ G  V   V WA T
Sbjct:    62 ALAAMNGR-KIMGKEVK--VNWATT 83

 Score = 49 (22.3 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query:   346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK 384
             P    ++   +     +Q +   F  FG+++  +VF DK
Sbjct:   200 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK 238

 Score = 45 (20.9 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
 Identities = 17/64 (26%), Positives = 21/64 (32%)

Query:   260 GNAMRGASPDLS-SNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPG 318
             G    G +  L      P    M    F   GY  V   Q   P+ G   G +P     G
Sbjct:   208 GGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRQTQSSAPWMGPNYGVQPPQGQNG 267

Query:   319 SVSP 322
             S+ P
Sbjct:   268 SMLP 271

 Score = 44 (20.5 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query:   274 MGPRNYAM-PPSGFVGSGYPAVP 295
             MGP NY + PP G  GS  P  P
Sbjct:   253 MGP-NYGVQPPQGQNGSMLPNQP 274


>GENEDB_PFALCIPARUM|PFL1745c [details] [associations]
            symbol:PFL1745c "clustered-asparagine-rich
            protein" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
            PROSITE:PS50102 SMART:SM00360 SMART:SM00456 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AE014188 Gene3D:2.20.70.10
            SUPFAM:SSF51045 RefSeq:XP_001350755.2 ProteinModelPortal:Q8I562
            IntAct:Q8I562 MINT:MINT-1548460 PRIDE:Q8I562
            EnsemblProtists:PFL1745c:mRNA GeneID:811401 KEGG:pfa:PFL1745c
            EuPathDB:PlasmoDB:PF3D7_1236100 HOGENOM:HOG000283459 Uniprot:Q8I562
        Length = 445

 Score = 172 (65.6 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
 Identities = 35/68 (51%), Positives = 48/68 (70%)

Query:   345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQ 404
             GP G+NLFI+HIP E+ D +L   F  FG ++S+K+  D +TG +  FGFVSY++  SAQ
Sbjct:   356 GPSGSNLFIFHIPSEWTDLDLFQHFCCFGNIISSKIQRD-STGRNSGFGFVSYDNVISAQ 414

Query:   405 NAIAMMNG 412
             +AI  MNG
Sbjct:   415 HAIQFMNG 422

 Score = 52 (23.4 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
 Identities = 22/91 (24%), Positives = 39/91 (42%)

Query:   100 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-------TSK---GCAFLKY 149
             L  KL I  +P ++++  + +L    G IKD+     S++        +K     A + +
Sbjct:    14 LNTKLHIQNIPPHITDVHLRSLLGNVGFIKDICYFNKSKKQMNNNNFANKKIYNTALVTF 73

Query:   150 ETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
              T E+AL  L+ I       G    +  K+A
Sbjct:    74 NTHEEALNVLKNIKNLIDTSGEERNIDAKFA 104

 Score = 43 (20.2 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
 Identities = 6/29 (20%), Positives = 15/29 (51%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEV 44
             KL +  +P H+T+  L ++      + ++
Sbjct:    17 KLHIQNIPPHITDVHLRSLLGNVGFIKDI 45


>UNIPROTKB|Q8I562 [details] [associations]
            symbol:PFL1745c "Clustered-asparagine-rich protein"
            species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR001202 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
            PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
            SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AE014188 Gene3D:2.20.70.10 SUPFAM:SSF51045
            RefSeq:XP_001350755.2 ProteinModelPortal:Q8I562 IntAct:Q8I562
            MINT:MINT-1548460 PRIDE:Q8I562 EnsemblProtists:PFL1745c:mRNA
            GeneID:811401 KEGG:pfa:PFL1745c EuPathDB:PlasmoDB:PF3D7_1236100
            HOGENOM:HOG000283459 Uniprot:Q8I562
        Length = 445

 Score = 172 (65.6 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
 Identities = 35/68 (51%), Positives = 48/68 (70%)

Query:   345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQ 404
             GP G+NLFI+HIP E+ D +L   F  FG ++S+K+  D +TG +  FGFVSY++  SAQ
Sbjct:   356 GPSGSNLFIFHIPSEWTDLDLFQHFCCFGNIISSKIQRD-STGRNSGFGFVSYDNVISAQ 414

Query:   405 NAIAMMNG 412
             +AI  MNG
Sbjct:   415 HAIQFMNG 422

 Score = 52 (23.4 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
 Identities = 22/91 (24%), Positives = 39/91 (42%)

Query:   100 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-------TSK---GCAFLKY 149
             L  KL I  +P ++++  + +L    G IKD+     S++        +K     A + +
Sbjct:    14 LNTKLHIQNIPPHITDVHLRSLLGNVGFIKDICYFNKSKKQMNNNNFANKKIYNTALVTF 73

Query:   150 ETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
              T E+AL  L+ I       G    +  K+A
Sbjct:    74 NTHEEALNVLKNIKNLIDTSGEERNIDAKFA 104

 Score = 43 (20.2 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
 Identities = 6/29 (20%), Positives = 15/29 (51%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEV 44
             KL +  +P H+T+  L ++      + ++
Sbjct:    17 KLHIQNIPPHITDVHLRSLLGNVGFIKDI 45


>UNIPROTKB|Q6GR16 [details] [associations]
            symbol:epabp-b "Embryonic polyadenylate-binding protein B"
            species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
            "eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
            "chordate embryonic development" evidence=ISS] [GO:0043621 "protein
            self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
            RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
            SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
            Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
        Length = 629

 Score = 123 (48.4 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
 Identities = 26/63 (41%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  ++  D+ L   F AFG  LS KV +D + G S+ FGFV+Y +   AQ A+  
Sbjct:   192 NVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNS-GRSRGFGFVNYGNHEEAQKAVTE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 111 (44.1 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
 Identities = 24/65 (36%), Positives = 33/65 (50%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D  L   F  +G + S KV  +   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 110 (43.8 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
 Identities = 35/152 (23%), Positives = 74/152 (48%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L++G +   +TEA L   F     +  + + +D  TR S    ++      +A++A++  
Sbjct:    13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N + + G   P+++ ++  D  L +     +FI  L  ++    +   FS +G I   +
Sbjct:    73 -NFEVIKGR--PIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  S+G  F+ +ET+E A  A++ +NG
Sbjct:   130 VVC-DEYGSRGYGFVHFETQEAANRAIQTMNG 160


>UNIPROTKB|D4A7H4 [details] [associations]
            symbol:Tia1 "Protein Tia1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            IPI:IPI00214634 ProteinModelPortal:D4A7H4
            Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
        Length = 281

 Score = 120 (47.3 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
 Identities = 37/155 (23%), Positives = 74/155 (47%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             L+VG + + +TEA +L +F +        +I D T      CFV     + A  A+ A +
Sbjct:     5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDPYCFVEFHEHRHAAAALAAMN 63

Query:    77 NKKTLPGASSPLQVKYA----DGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
              +K +      ++V +A      + +   H  +F+G L   ++  ++ A F+ +G I D 
Sbjct:    64 GRKIM---GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 120

Query:   132 QILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 165
             ++++  +   SKG  F+ +  K  A  A++ + G+
Sbjct:   121 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 155

 Score = 118 (46.6 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
 Identities = 25/63 (39%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             ++F+  +  E   +++  AF  FGR+  A+V  D ATG SK +GFVS+ +   A+NAI  
Sbjct:    92 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 151

Query:   410 MNG 412
             M G
Sbjct:   152 MGG 154

 Score = 104 (41.7 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 163
             L++G L ++V+EA +  LFS  G  K+ +++  +      C F+++     A AAL A+N
Sbjct:     5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAAMN 63

Query:   164 GKHKMEGSSVPLVVKWADT 182
             G+ K+ G  V   V WA T
Sbjct:    64 GR-KIMGKEVK--VNWATT 79

 Score = 55 (24.4 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
 Identities = 18/82 (21%), Positives = 30/82 (36%)

Query:   305 GGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIY--HIPQEFGD 362
             G  LG R +  +  +  P    S                +  PG N  +Y   +     +
Sbjct:   154 GQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPG-NCTVYCGGVTSGLTE 212

Query:   363 QELGNAFQAFGRVLSAKVFVDK 384
             Q +   F  FG+++  +VF DK
Sbjct:   213 QLMRQTFSPFGQIMEIRVFPDK 234

 Score = 47 (21.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query:   222 PYNGYGY----QASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRG 265
             P  GY +    Q+S  +    Y +PP Q Q G  G++P    G  + G
Sbjct:   232 PDKGYSFIRQTQSSAPWMGPNYSVPPPQGQNG--GMLPNQPAGYRVAG 277

 Score = 41 (19.5 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query:   274 MGPRNYAMPP-SGFVGSGYPAVP 295
             MGP NY++PP  G  G   P  P
Sbjct:   249 MGP-NYSVPPPQGQNGGMLPNQP 270


>SGD|S000000967 [details] [associations]
            symbol:PAB1 "Poly(A) binding protein" species:4932
            "Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
            evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
            [GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
            stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0006446 "regulation of translational
            initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
            "transport" evidence=IEA] [GO:0051028 "mRNA transport"
            evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
            poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
            GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
            GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
            GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
            EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
            PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
            DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
            PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
            KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
            NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
            Uniprot:P04147
        Length = 577

 Score = 124 (48.7 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
 Identities = 47/202 (23%), Positives = 79/202 (39%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   ++EA L  +F     V  + + +D  T+ S    +V     +   KA+   
Sbjct:    40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99

Query:    76 HNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
              N   + G    +     D  L +     +FI  L  ++    +   FS++G I   +I 
Sbjct:   100 -NYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIA 158

Query:   135 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV---P-LVVKWADTEKEXXXXX 190
                   SKG  F+ +E +  A  A++A+NG   + G  +   P L  K  D++ E     
Sbjct:   159 TDENGKSKGFGFVHFEEEGAAKEAIDALNGM-LLNGQEIYVAPHLSRKERDSQLEETKAH 217

Query:   191 XXXXXXXXNNLPNADSQHPSLF 212
                      N    D Q   LF
Sbjct:   218 YTNLYVKNINSETTDEQFQELF 239

 Score = 121 (47.7 bits), Expect = 0.00030, P = 0.00030
 Identities = 62/273 (22%), Positives = 109/273 (39%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             L+V  +    T+ Q   +F +F  +   ++ KD   +     FV     ++A KAV A +
Sbjct:   221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280

Query:    77 N-----KKTLPGASSP-------LQVKYADGELERLEH----KLFIGMLPKNVSEAEVSA 120
             +     +K   G +         L+ +Y    LE++       LF+  L  +V + ++  
Sbjct:   281 DSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEE 340

Query:   121 LFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180
              F+ YGTI   +++R     SKG  F+ + T E+A    +AI  K++   +  PL V  A
Sbjct:   341 EFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEAT---KAITEKNQQIVAGKPLYVAIA 397

Query:   181 DTEKEXXXXXXXXXXXXXNNL--PNADSQHPSLFGALPMGYAPPYNGYGYQASGSY---G 235
                K+             N +    A +   +    +P  + PP   YG          G
Sbjct:   398 Q-RKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMF-YGVMPPRGVPFNG 455

Query:   236 LMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASP 268
                 ++ PM   P  +G+ PP  +   + G  P
Sbjct:   456 PNPQQMNPMGGMPK-NGM-PPQFRNGPVYGVPP 486

 Score = 115 (45.5 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+FI ++  +  ++ L + F  FG +LS+K+  D+  G SK FGFV +E   +A+ AI  
Sbjct:   127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDA 185

Query:   410 MNG 412
             +NG
Sbjct:   186 LNG 188

 Score = 107 (42.7 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NLF+ ++     D++L   F  +G + SAKV   +  G SK FGFV + +P  A  AI
Sbjct:   321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEATKAI 379

Query:   408 AMMN 411
                N
Sbjct:   380 TEKN 383

 Score = 98 (39.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL++ +I  E  D++    F  FG ++SA +  D A G  K FGFV+YE    A  A+  
Sbjct:   220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEA 278

Query:   410 MN 411
             +N
Sbjct:   279 LN 280

 Score = 90 (36.7 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
 Identities = 20/68 (29%), Positives = 38/68 (55%)

Query:    97 LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQA 155
             +E     L++G L  +VSEA +  +FS  G++  +++ R +  +TS G A++ +   E  
Sbjct:    33 VENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAG 92

Query:   156 LAALEAIN 163
               A+E +N
Sbjct:    93 RKAIEQLN 100


>UNIPROTKB|Q9H361 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
            process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
            eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
            EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
            PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
            IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
            PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
            GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
            GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
            PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
            PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
            NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
            Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
        Length = 631

 Score = 122 (48.0 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  ++  D+ L + F  FG  LS KV  D++ G SK FGFVS+E    AQ A+  
Sbjct:   192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 120 (47.3 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
 Identities = 26/63 (41%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL++ ++     D+ L  AF  FG + SAKV ++   G SK FGFV + SP  A  A+  
Sbjct:   295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE 352

Query:   410 MNG 412
             MNG
Sbjct:   353 MNG 355

 Score = 110 (43.8 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
 Identities = 37/152 (24%), Positives = 73/152 (48%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDK-TTRASRCCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + I +D  T+ +S   +V     ++A+ A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N   + G   P+++ ++  D  L +     +F+  L K+++   +    S +G I    
Sbjct:    73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCN 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  SKG  F+ +ET E A  A++ +NG
Sbjct:   130 VVC-DENGSKGYGFVHFETHEAAERAIKKMNG 160

 Score = 89 (36.4 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
 Identities = 31/163 (19%), Positives = 70/163 (42%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +FV  + K +    L      F  +   N++ D+   +    FV   + + A++A+   +
Sbjct:   101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMN 159

Query:    77 N-----KKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                   +K   G     + + A+ G   +    ++I    +++ +  +  LF  +G    
Sbjct:   160 GMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALS 219

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++      SKG  F+ +E  E A  A++ +NGK ++ G  +
Sbjct:   220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261


>WB|WBGene00004723 [details] [associations]
            symbol:sap-49 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0042127 "regulation of cell proliferation"
            evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
            [GO:0040022 "feminization of hermaphroditic germ-line"
            evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
            GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
            GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
            GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
            ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
            PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
            GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
            WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
            Uniprot:Q09442
        Length = 388

 Score = 180 (68.4 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 85/312 (27%), Positives = 135/312 (43%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             ++VG + + ++E+ L  +  +   V  VN+ KD+ T   +   FV     ++AD A+   
Sbjct:    15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74

Query:    76 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 132
             +  K L G   P++V  A    + ++    +F+G L   V E  +   FS +G I  + +
Sbjct:    75 NMIK-LYG--KPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131

Query:   133 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGS-SVPLVVKWADTEKEXXXXX 190
             I+R     TSKG AF+ + + E +  ALEA+NG+     + +V    K  D++ E     
Sbjct:   132 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK-RDSKGERHGTA 190

Query:   191 XXXXXXXXNNLPNADSQHPSLFGALPMGYAP--PYNGYGYQAS---GSYGLMQYRLPPMQ 245
                     N L   D  H  +F  +P+G     P    G  A+    + G   Y+ PP+ 
Sbjct:   191 AERMLAAQNPLFPKDRPH-QVFSDVPLGVPANTPLAMPGVHAAIAAHATGRPGYQPPPLM 249

Query:   246 N--QPGFHGIIPPVNQGN-AMRGASPDL--SSNMGPRNYAMPPSGFVGSGYPAVPGLQYP 300
                Q G+ G  PPV     ++    P +  +  M PR    P SG      P  PG    
Sbjct:   250 GMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRT-- 307

Query:   301 MPYPGGMLGHRP 312
              P P GM G  P
Sbjct:   308 -PGPPGMPGMPP 318


>UNIPROTKB|Q09442 [details] [associations]
            symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
            GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
            GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
            GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
            PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
            SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
            EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
            KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
            WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
            Uniprot:Q09442
        Length = 388

 Score = 180 (68.4 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 85/312 (27%), Positives = 135/312 (43%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             ++VG + + ++E+ L  +  +   V  VN+ KD+ T   +   FV     ++AD A+   
Sbjct:    15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74

Query:    76 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 132
             +  K L G   P++V  A    + ++    +F+G L   V E  +   FS +G I  + +
Sbjct:    75 NMIK-LYG--KPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131

Query:   133 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGS-SVPLVVKWADTEKEXXXXX 190
             I+R     TSKG AF+ + + E +  ALEA+NG+     + +V    K  D++ E     
Sbjct:   132 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK-RDSKGERHGTA 190

Query:   191 XXXXXXXXNNLPNADSQHPSLFGALPMGYAP--PYNGYGYQAS---GSYGLMQYRLPPMQ 245
                     N L   D  H  +F  +P+G     P    G  A+    + G   Y+ PP+ 
Sbjct:   191 AERMLAAQNPLFPKDRPH-QVFSDVPLGVPANTPLAMPGVHAAIAAHATGRPGYQPPPLM 249

Query:   246 N--QPGFHGIIPPVNQGN-AMRGASPDL--SSNMGPRNYAMPPSGFVGSGYPAVPGLQYP 300
                Q G+ G  PPV     ++    P +  +  M PR    P SG      P  PG    
Sbjct:   250 GMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRT-- 307

Query:   301 MPYPGGMLGHRP 312
              P P GM G  P
Sbjct:   308 -PGPPGMPGMPP 318


>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
            symbol:tia1l "cytotoxic granule-associated RNA
            binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
            OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
            EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
            SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
            CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
        Length = 342

 Score = 137 (53.3 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
 Identities = 42/155 (27%), Positives = 77/155 (49%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             L+VG + + +TEA +L +F +        +I D TT     CFV     + A  A+ A +
Sbjct:    11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILD-TTGNDPYCFVEFYENRHAAAALAAMN 69

Query:    77 NKKTLPGASSPLQVKYADG----ELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
              +K L      ++V +A      + +   H  +F+G L   +S  +V A F+ +G I D 
Sbjct:    70 GRKIL---GKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDA 126

Query:   132 QILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 165
             ++++  +   SKG  F+ +  K  A +A++ +NG+
Sbjct:   127 RVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQ 161

 Score = 113 (44.8 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
 Identities = 23/63 (36%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             ++F+  +  E    ++  AF  FG++  A+V  D ATG SK +GF+S+ +   A++AI  
Sbjct:    98 HVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQ 157

Query:   410 MNG 412
             MNG
Sbjct:   158 MNG 160

 Score = 95 (38.5 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
 Identities = 25/79 (31%), Positives = 43/79 (54%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 163
             L++G L ++V+EA +  +FS  G  K  +++  +      C F+++     A AAL A+N
Sbjct:    11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDPYC-FVEFYENRHAAAALAAMN 69

Query:   164 GKHKMEGSSVPLVVKWADT 182
             G+ K+ G  +   V WA T
Sbjct:    70 GR-KILGKDMK--VNWAST 85

 Score = 85 (35.0 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
 Identities = 26/110 (23%), Positives = 44/110 (40%)

Query:   305 GGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIY--HIPQEFGD 362
             G  LG R +  +  +  P+   SN              +     +N  +Y   I     D
Sbjct:   160 GQWLGGRQIRTNWATRKPSAPKSNNEGASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSD 219

Query:   363 QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             Q +   F  FG+++  +VF +K       + FV ++S   A +AI  +NG
Sbjct:   220 QLMRQTFSPFGQIMEIRVFPEKG------YSFVRFDSHEGAAHAIVSVNG 263


>RGD|1305742 [details] [associations]
            symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
            protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
            stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
            binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
            translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
            cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
            "regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
            GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
            CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
            RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
            Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
            UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
            Uniprot:Q5PQR7
        Length = 375

 Score = 120 (47.3 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
 Identities = 37/155 (23%), Positives = 74/155 (47%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             L+VG + + +TEA +L +F +        +I D T      CFV     + A  A+ A +
Sbjct:     9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDPYCFVEFHEHRHAAAALAAMN 67

Query:    77 NKKTLPGASSPLQVKYA----DGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
              +K +      ++V +A      + +   H  +F+G L   ++  ++ A F+ +G I D 
Sbjct:    68 GRKIM---GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 124

Query:   132 QILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 165
             ++++  +   SKG  F+ +  K  A  A++ + G+
Sbjct:   125 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 159

 Score = 118 (46.6 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
 Identities = 25/63 (39%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             ++F+  +  E   +++  AF  FGR+  A+V  D ATG SK +GFVS+ +   A+NAI  
Sbjct:    96 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 155

Query:   410 MNG 412
             M G
Sbjct:   156 MGG 158

 Score = 105 (42.0 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
 Identities = 27/85 (31%), Positives = 46/85 (54%)

Query:    98 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 157
             + +   L++G L ++V+EA +  LFS  G  K+ +++  +      C F+++     A A
Sbjct:     3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61

Query:   158 ALEAINGKHKMEGSSVPLVVKWADT 182
             AL A+NG+ K+ G  V   V WA T
Sbjct:    62 ALAAMNGR-KIMGKEVK--VNWATT 83

 Score = 79 (32.9 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
 Identities = 26/110 (23%), Positives = 43/110 (39%)

Query:   305 GGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIY--HIPQEFGD 362
             G  LG R +  +  +  P    S                +  PG N  +Y   +     +
Sbjct:   158 GQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPG-NCTVYCGGVTSGLTE 216

Query:   363 QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             Q +   F  FG+++  +VF DK       + F+ + S  SA +AI  +NG
Sbjct:   217 QLMRQTFSPFGQIMEIRVFPDKG------YSFIRFSSHESAAHAIVSVNG 260

 Score = 63 (27.2 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
 Identities = 27/83 (32%), Positives = 38/83 (45%)

Query:   217 MGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP--GFHGIIPPVNQG-NAMRGASPDLSSN 273
             +GY P Y  +G     +  + QY +P     P  G +G  P   QG N  + ++P     
Sbjct:   289 IGYPPAYGQWGQWYGNAQQIGQY-VPNGWQVPAYGMYGQ-PWSQQGFNQTQSSAPW---- 342

Query:   274 MGPRNYAMPP-SGFVGSGYPAVP 295
             MGP NY++PP  G  G   P  P
Sbjct:   343 MGP-NYSVPPPQGQNGGMLPNQP 364


>UNIPROTKB|E1BNB4 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
            EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
            Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
        Length = 618

 Score = 120 (47.3 bits), Expect = 0.00043, P = 0.00043
 Identities = 27/63 (42%), Positives = 40/63 (63%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+FI ++     ++ L + F  FG +LS KV  D+  G S+ FGFV +E+  +AQNAI+ 
Sbjct:   100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEH-G-SRGFGFVHFETHEAAQNAIST 157

Query:   410 MNG 412
             MNG
Sbjct:   158 MNG 160

 Score = 118 (46.6 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D++L   F  +G + SAKV  +   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 116 (45.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+++ ++  +  +Q L + F  FG++LS KV  D + G S+ FGFV++E    AQ A+  
Sbjct:   192 NIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDS-GHSRGFGFVNFEKHEEAQKAVVN 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 111 (44.1 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
 Identities = 36/152 (23%), Positives = 72/152 (47%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + + +D  TR S    ++      +A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N + + G   P+++ ++  D  L +     +FI  L  ++    +   FS +G I   +
Sbjct:    73 -NFEVIKG--QPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++   +  S+G  F+ +ET E A  A+  +NG
Sbjct:   130 VVC-DEHGSRGFGFVHFETHEAAQNAISTMNG 160

 Score = 85 (35.0 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
 Identities = 31/156 (19%), Positives = 68/156 (43%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             +F+  +   +    L   F  F  +    ++ D+    SR   FV   + + A  A++  
Sbjct:   101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQNAISTM 158

Query:    76 H-----NKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIK 129
             +     ++K   G     + +  +     +E   +++  L  +V E  +  LFS +G + 
Sbjct:   159 NGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKML 218

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
              ++++R     S+G  F+ +E  E+A  A+  +NG+
Sbjct:   219 SVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGR 254


>UNIPROTKB|F8W8I6 [details] [associations]
            symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
            HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
            ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
            Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
            Uniprot:F8W8I6
        Length = 385

 Score = 118 (46.6 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
 Identities = 25/63 (39%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             ++F+  +  E   +++  AF  FGR+  A+V  D ATG SK +GFVS+ +   A+NAI  
Sbjct:   107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166

Query:   410 MNG 412
             M G
Sbjct:   167 MGG 169

 Score = 107 (42.7 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
 Identities = 39/163 (23%), Positives = 75/163 (46%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             L+VG + + +TEA +L +F +        +I D T      CFV     + A  A+ A +
Sbjct:     9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDPYCFVEFHEHRHAAAALAAMN 67

Query:    77 NKKTLPG------ASSPLQVKYADGE-----LERLE-H-KLFIGMLPKNVSEAEVSALFS 123
              +K +        A++P   K           +R + H  +F+G L   ++  ++ A F+
Sbjct:    68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127

Query:   124 IYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 165
              +G I D ++++  +   SKG  F+ +  K  A  A++ + G+
Sbjct:   128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 170

 Score = 105 (42.0 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
 Identities = 27/85 (31%), Positives = 46/85 (54%)

Query:    98 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 157
             + +   L++G L ++V+EA +  LFS  G  K+ +++  +      C F+++     A A
Sbjct:     3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61

Query:   158 ALEAINGKHKMEGSSVPLVVKWADT 182
             AL A+NG+ K+ G  V   V WA T
Sbjct:    62 ALAAMNGR-KIMGKEVK--VNWATT 83

 Score = 74 (31.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
 Identities = 18/67 (26%), Positives = 31/67 (46%)

Query:   346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 405
             P    ++   +     +Q +   F  FG+++  +VF DK       + FV + S  SA +
Sbjct:   211 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKG------YSFVRFNSHESAAH 264

Query:   406 AIAMMNG 412
             AI  +NG
Sbjct:   265 AIVSVNG 271

 Score = 61 (26.5 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
 Identities = 26/83 (31%), Positives = 37/83 (44%)

Query:   217 MGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV--NQG-NAMRGASPDLSSN 273
             +GY  PY  +G     +  + QY +P     P + G+       QG N  + ++P     
Sbjct:   299 IGYPQPYGQWGQWYGNAQQIGQY-MPNGWQVPAY-GMYGQAWNQQGFNQTQSSAPW---- 352

Query:   274 MGPRNYAM-PPSGFVGSGYPAVP 295
             MGP NY + PP G  GS  P  P
Sbjct:   353 MGP-NYGVQPPQGQNGSMLPNQP 374


>MGI|MGI:107914 [details] [associations]
            symbol:Tia1 "cytotoxic granule-associated RNA binding protein
            1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
            "apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
            evidence=IDA] [GO:0017148 "negative regulation of translation"
            evidence=IMP] [GO:0042036 "negative regulation of cytokine
            biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
            splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
            GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
            KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
            EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
            UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
            ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
            PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
            Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
            InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
            NextBio:301304 Bgee:P52912 Genevestigator:P52912
            GermOnline:ENSMUSG00000071337 Uniprot:P52912
        Length = 386

 Score = 118 (46.6 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
 Identities = 25/63 (39%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             ++F+  +  E   +++  AF  FGR+  A+V  D ATG SK +GFVS+ +   A+NAI  
Sbjct:   107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166

Query:   410 MNG 412
             M G
Sbjct:   167 MGG 169

 Score = 107 (42.7 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
 Identities = 39/163 (23%), Positives = 75/163 (46%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             L+VG + + +TEA +L +F +        +I D T      CFV     + A  A+ A +
Sbjct:     9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDPYCFVEFHEHRHAAAALAAMN 67

Query:    77 NKKTLPG------ASSPLQVKYADGE-----LERLE-H-KLFIGMLPKNVSEAEVSALFS 123
              +K +        A++P   K           +R + H  +F+G L   ++  ++ A F+
Sbjct:    68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127

Query:   124 IYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 165
              +G I D ++++  +   SKG  F+ +  K  A  A++ + G+
Sbjct:   128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 170

 Score = 105 (42.0 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
 Identities = 27/85 (31%), Positives = 46/85 (54%)

Query:    98 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 157
             + +   L++G L ++V+EA +  LFS  G  K+ +++  +      C F+++     A A
Sbjct:     3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61

Query:   158 ALEAINGKHKMEGSSVPLVVKWADT 182
             AL A+NG+ K+ G  V   V WA T
Sbjct:    62 ALAAMNGR-KIMGKEVK--VNWATT 83

 Score = 74 (31.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
 Identities = 26/110 (23%), Positives = 42/110 (38%)

Query:   305 GGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIY--HIPQEFGD 362
             G  LG R +  +  +  P    S                +  P  N  +Y   +     +
Sbjct:   169 GQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPN-NCTVYCGGVTSGLTE 227

Query:   363 QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             Q +   F  FG+++  +VF DK       + FV + S  SA +AI  +NG
Sbjct:   228 QLMRQTFSPFGQIMEIRVFPDKG------YSFVRFSSHESAAHAIVSVNG 271

 Score = 70 (29.7 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
 Identities = 27/83 (32%), Positives = 40/83 (48%)

Query:   217 MGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGII--PPVNQG-NAMRGASPDLSSN 273
             +GY P Y  +G     +  + QY +P     P + G+   P   QG N  + ++P     
Sbjct:   300 IGYPPTYGQWGQWYGNAQQIGQY-VPNGWQVPAY-GVYGQPWSQQGFNQTQSSAPW---- 353

Query:   274 MGPRNYAMPP-SGFVGSGYPAVP 295
             MGP NY++PP  G  GS  P+ P
Sbjct:   354 MGP-NYSVPPPQGQNGSMLPSQP 375


>UNIPROTKB|P31483 [details] [associations]
            symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
            "cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
            element binding" evidence=IEA] [GO:0017148 "negative regulation of
            translation" evidence=IEA] [GO:0042036 "negative regulation of
            cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0048024 "regulation of mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
            [GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
            GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
            GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
            EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
            PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
            PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
            IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
            PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
            Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
            UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
            MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
            InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
            EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
            ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
            Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
        Length = 386

 Score = 118 (46.6 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
 Identities = 25/63 (39%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             ++F+  +  E   +++  AF  FGR+  A+V  D ATG SK +GFVS+ +   A+NAI  
Sbjct:   107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166

Query:   410 MNG 412
             M G
Sbjct:   167 MGG 169

 Score = 107 (42.7 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
 Identities = 39/163 (23%), Positives = 75/163 (46%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             L+VG + + +TEA +L +F +        +I D T      CFV     + A  A+ A +
Sbjct:     9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDPYCFVEFHEHRHAAAALAAMN 67

Query:    77 NKKTLPG------ASSPLQVKYADGE-----LERLE-H-KLFIGMLPKNVSEAEVSALFS 123
              +K +        A++P   K           +R + H  +F+G L   ++  ++ A F+
Sbjct:    68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127

Query:   124 IYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 165
              +G I D ++++  +   SKG  F+ +  K  A  A++ + G+
Sbjct:   128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 170

 Score = 105 (42.0 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
 Identities = 27/85 (31%), Positives = 46/85 (54%)

Query:    98 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 157
             + +   L++G L ++V+EA +  LFS  G  K+ +++  +      C F+++     A A
Sbjct:     3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61

Query:   158 ALEAINGKHKMEGSSVPLVVKWADT 182
             AL A+NG+ K+ G  V   V WA T
Sbjct:    62 ALAAMNGR-KIMGKEVK--VNWATT 83

 Score = 74 (31.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
 Identities = 18/67 (26%), Positives = 31/67 (46%)

Query:   346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 405
             P    ++   +     +Q +   F  FG+++  +VF DK       + FV + S  SA +
Sbjct:   211 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKG------YSFVRFNSHESAAH 264

Query:   406 AIAMMNG 412
             AI  +NG
Sbjct:   265 AIVSVNG 271

 Score = 61 (26.5 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
 Identities = 26/83 (31%), Positives = 37/83 (44%)

Query:   217 MGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV--NQG-NAMRGASPDLSSN 273
             +GY  PY  +G     +  + QY +P     P + G+       QG N  + ++P     
Sbjct:   300 IGYPQPYGQWGQWYGNAQQIGQY-MPNGWQVPAY-GMYGQAWNQQGFNQTQSSAPW---- 353

Query:   274 MGPRNYAM-PPSGFVGSGYPAVP 295
             MGP NY + PP G  GS  P  P
Sbjct:   354 MGP-NYGVQPPQGQNGSMLPNQP 375


>UNIPROTKB|D4A6U8 [details] [associations]
            symbol:Tia1 "Protein Tia1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
            OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
            Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
        Length = 382

 Score = 118 (46.6 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
 Identities = 25/63 (39%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             ++F+  +  E   +++  AF  FGR+  A+V  D ATG SK +GFVS+ +   A+NAI  
Sbjct:   103 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 162

Query:   410 MNG 412
             M G
Sbjct:   163 MGG 165

 Score = 107 (42.7 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
 Identities = 39/163 (23%), Positives = 75/163 (46%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             L+VG + + +TEA +L +F +        +I D T      CFV     + A  A+ A +
Sbjct:     5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDPYCFVEFHEHRHAAAALAAMN 63

Query:    77 NKKTLPG------ASSPLQVKYADGE-----LERLE-H-KLFIGMLPKNVSEAEVSALFS 123
              +K +        A++P   K           +R + H  +F+G L   ++  ++ A F+
Sbjct:    64 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 123

Query:   124 IYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 165
              +G I D ++++  +   SKG  F+ +  K  A  A++ + G+
Sbjct:   124 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 166

 Score = 104 (41.7 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 163
             L++G L ++V+EA +  LFS  G  K+ +++  +      C F+++     A AAL A+N
Sbjct:     5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAAMN 63

Query:   164 GKHKMEGSSVPLVVKWADT 182
             G+ K+ G  V   V WA T
Sbjct:    64 GR-KIMGKEVK--VNWATT 79

 Score = 79 (32.9 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
 Identities = 26/110 (23%), Positives = 43/110 (39%)

Query:   305 GGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIY--HIPQEFGD 362
             G  LG R +  +  +  P    S                +  PG N  +Y   +     +
Sbjct:   165 GQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPG-NCTVYCGGVTSGLTE 223

Query:   363 QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             Q +   F  FG+++  +VF DK       + F+ + S  SA +AI  +NG
Sbjct:   224 QLMRQTFSPFGQIMEIRVFPDKG------YSFIRFSSHESAAHAIVSVNG 267

 Score = 63 (27.2 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
 Identities = 27/83 (32%), Positives = 38/83 (45%)

Query:   217 MGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP--GFHGIIPPVNQG-NAMRGASPDLSSN 273
             +GY P Y  +G     +  + QY +P     P  G +G  P   QG N  + ++P     
Sbjct:   296 IGYPPAYGQWGQWYGNAQQIGQY-VPNGWQVPAYGMYGQ-PWSQQGFNQTQSSAPW---- 349

Query:   274 MGPRNYAMPP-SGFVGSGYPAVP 295
             MGP NY++PP  G  G   P  P
Sbjct:   350 MGP-NYSVPPPQGQNGGMLPNQP 371


>FB|FBgn0264270 [details] [associations]
            symbol:Sxl "Sex lethal" species:7227 "Drosophila
            melanogaster" [GO:0048024 "regulation of mRNA splicing, via
            spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
            determination" evidence=TAS] [GO:0007549 "dosage compensation"
            evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
            [GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
            evidence=TAS] [GO:0007541 "sex determination, primary response to
            X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
            [GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
            "reciprocal meiotic recombination" evidence=TAS] [GO:0018993
            "somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
            binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
            evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
            [GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
            differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
            of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
            binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
            activity, nucleic acid binding" evidence=TAS] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=TAS]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
            evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
            [GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
            "oocyte differentiation" evidence=IDA] [GO:0043234 "protein
            complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
            GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
            GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
            GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
            GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
            GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
            GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
            EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
            EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
            RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
            RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
            RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
            RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
            RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
            RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
            RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
            RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
            PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
            ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
            STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
            EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
            GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
            FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
            OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
            Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
        Length = 354

 Score = 175 (66.7 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 55/202 (27%), Positives = 96/202 (47%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKD-KTTRASRCCFVICPSRQEADKAVNAC 75
             L V  +P+ MT+ +L A+F+    ++   I++D KT  +    FV   S  ++ +A+   
Sbjct:   127 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVL 186

Query:    76 HNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 134
              N  T+   +  L+V YA    E ++   L++  LP+ +++ ++  +F  YG+I    IL
Sbjct:   187 -NGITV--RNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNIL 243

Query:   135 RGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE-KEXXXXXXX 192
             R       +G AF++Y  +E+A  A+ A+N     EG S PL V+ A+   K        
Sbjct:   244 RDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP-EGGSQPLSVRLAEEHGKAKAAHFMS 302

Query:   193 XXXXXXNNLPNADSQHPSLFGA 214
                    N+P    Q P+   A
Sbjct:   303 QMGVVPANVPPPPPQPPAHMAA 324

 Score = 117 (46.2 bits), Expect = 0.00039, P = 0.00039
 Identities = 47/177 (26%), Positives = 74/177 (41%)

Query:   251 HGIIPPV---NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPG-- 305
             +G  PP    N+ +  RG     S   G   YA  P     S +P+    +    +PG  
Sbjct:    13 NGGYPPYGYNNKSSGGRGFGMSHSLPSGMSRYAFSPQDTEFS-FPSSSSRRGYNDFPGCG 71

Query:   306 GMLGHR-PLNNSPGS----VSPAVANS--NPXXXXXXXXXXXXQIEGPPGA---NLFIYH 355
             G  G+    NN  G     + P  +N+  N              +   P A   NL + +
Sbjct:    72 GSGGNGGSANNLGGGNMCHLPPMASNNSLNNLCGLSLGSGGSDDLMNDPRASNTNLIVNY 131

Query:   356 IPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412
             +PQ+  D+EL   F+A G + + ++  D  TG S  + FV + S   +Q AI ++NG
Sbjct:   132 LPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNG 188


>UNIPROTKB|F1SDR6 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
            EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
        Length = 608

 Score = 119 (46.9 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D++L   F  +G + SAKV  +   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 109 (43.4 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
 Identities = 23/63 (36%), Positives = 39/63 (61%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+++ ++  +  ++ L + F  FG++LS KV  D + G S+ FGFV++E    AQ A+  
Sbjct:   192 NIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDS-GHSRGFGFVNFEKHEDAQKAVTD 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253

 Score = 108 (43.1 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
 Identities = 36/152 (23%), Positives = 71/152 (46%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + + +D  TR S    ++      +A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N + + G   P+++ ++  D  L +     +FI  L  ++    +   FS +G I   +
Sbjct:    73 -NFEVIKG--QPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++      S+G  F+ +ET E A  A+  +NG
Sbjct:   130 VVC-DDHGSRGFGFVHFETHEAAQNAIRTMNG 160

 Score = 90 (36.7 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
 Identities = 27/103 (26%), Positives = 50/103 (48%)

Query:    66 QEADKAVNAC--HNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALF 122
             Q A + +N    +++K   G     + + A+     LE   +++  L  +V E  +  LF
Sbjct:   152 QNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLF 211

Query:   123 SIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
             S +G I  ++++R     S+G  F+ +E  E A  A+  +NGK
Sbjct:   212 SQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGK 254


>UNIPROTKB|Q0VBZ6 [details] [associations]
            symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
            protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
            regulation of cytokine biosynthetic process" evidence=IEA]
            [GO:0017148 "negative regulation of translation" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
            "cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
            GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
            HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
            OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
            IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
            Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
            InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
        Length = 384

 Score = 118 (46.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
 Identities = 25/63 (39%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             ++F+  +  E   +++  AF  FGR+  A+V  D ATG SK +GFVS+ +   A+NAI  
Sbjct:   107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166

Query:   410 MNG 412
             M G
Sbjct:   167 MGG 169

 Score = 106 (42.4 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
 Identities = 39/163 (23%), Positives = 75/163 (46%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             L+VG + + +TEA +L +F +        +I D T      CFV     + A  A+ A +
Sbjct:     9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDPYCFVEFYEHRHAAAALAAMN 67

Query:    77 NKKTLPG------ASSPLQVKYADGE-----LERLE-H-KLFIGMLPKNVSEAEVSALFS 123
              +K +        A++P   K           +R + H  +F+G L   ++  ++ A F+
Sbjct:    68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127

Query:   124 IYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 165
              +G I D ++++  +   SKG  F+ +  K  A  A++ + G+
Sbjct:   128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 170

 Score = 103 (41.3 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
 Identities = 27/85 (31%), Positives = 46/85 (54%)

Query:    98 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 157
             + +   L++G L ++V+EA +  LFS  G  K+ +++  +      C F+++     A A
Sbjct:     3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFYEHRHAAA 61

Query:   158 ALEAINGKHKMEGSSVPLVVKWADT 182
             AL A+NG+ K+ G  V   V WA T
Sbjct:    62 ALAAMNGR-KIMGKEVK--VNWATT 83

 Score = 74 (31.1 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
 Identities = 18/67 (26%), Positives = 31/67 (46%)

Query:   346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 405
             P    ++   +     +Q +   F  FG+++  +VF DK       + FV + S  SA +
Sbjct:   211 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKG------YSFVRFNSHESAAH 264

Query:   406 AIAMMNG 412
             AI  +NG
Sbjct:   265 AIVSVNG 271

 Score = 61 (26.5 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
 Identities = 26/81 (32%), Positives = 34/81 (41%)

Query:   217 MGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ-GNAMRGASPDLSSNMG 275
             +GY   Y  +G     +  + QY +P     P +     P NQ G     +SP     MG
Sbjct:   300 IGYPQAYGQWGQWYGNAQQIGQY-MPNGWQVPAYGMYGQPWNQQGFNQTQSSPPW---MG 355

Query:   276 PRNYAM-PPSGFVGSGYPAVP 295
             P NY + PP G  GS  P  P
Sbjct:   356 P-NYGVQPPPGQNGSMMPNQP 375


>UNIPROTKB|H9L019 [details] [associations]
            symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
            spliceosomal complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
            EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
            ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
            KEGG:gga:426042 Uniprot:H9L019
        Length = 418

 Score = 176 (67.0 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 89/309 (28%), Positives = 133/309 (43%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             ++VG + + ++E  L  +F +   V   ++ KD+ T   +   FV   S ++AD A+   
Sbjct:    15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74

Query:    76 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 132
             +  K L G   P++V  A    + L+    +FIG L   + E  +   FS +G I    +
Sbjct:    75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131

Query:   133 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 188
             I+R      SKG AF+ + + + + AA+EA+NG++       P+ V +A   D++ E   
Sbjct:   132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188

Query:   189 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 248
                       N L  AD  H  LF   P    PP        +   G+    LPP    P
Sbjct:   189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSVPTPVVTALGPGVTPPGLPP----P 240

Query:   249 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPP-SGFVGSGYPAVP-GLQYPMPY--- 303
             G     PPV    AM    P +   M P    MPP +G  G    A P G   P P+   
Sbjct:   241 G--SFPPPVPPPGAM---PPGMPPAMPPP--PMPPGAGAPGPPTGAAPTGGHPPHPHAFP 293

Query:   304 PGGMLGHRP 312
             PGGM  H P
Sbjct:   294 PGGM--HHP 300


>CGD|CAL0004726 [details] [associations]
            symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
            "cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
            "poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
            stability" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
            RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
            GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
        Length = 510

 Score = 122 (48.0 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
 Identities = 36/123 (29%), Positives = 58/123 (47%)

Query:    63 PSRQEA-DKAVNACHNKKTLPGASSPLQVKYA---DGELERLEHKLFIGMLPKNVSEAEV 118
             P +Q++ + + N     +         QV  A   +G  E     L++G LPK+ SE  +
Sbjct:    36 PEQQQSTESSENESQQAQQPSSQDDEKQVNAASAKEGGREVSNKILYVGNLPKSASEETI 95

Query:   119 SALFSIYGT-IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 177
               LFS+ G  +K ++IL    +     AF++Y+T E A  AL  +NG+       V + V
Sbjct:    96 QELFSVGGNPVKTIKILNDKNKAGFNYAFIEYDTNEVADMALNTLNGRLV---DDVEIKV 152

Query:   178 KWA 180
              WA
Sbjct:   153 NWA 155

 Score = 102 (41.0 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
 Identities = 23/66 (34%), Positives = 36/66 (54%)

Query:   347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNA 406
             P  N+F+  +  E  D+ L NAF  F  +  A V  D  T  S+ +GFV++ + + A+ A
Sbjct:   171 PLFNIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELA 230

Query:   407 IAMMNG 412
             +  MNG
Sbjct:   231 LQTMNG 236


>UNIPROTKB|E2RND1 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
            EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
        Length = 644

 Score = 118 (46.6 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D++L   F  +G + SAKV  +   G SK FGFV + SP  A  A+
Sbjct:   293 GVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350

Query:   408 AMMNG 412
               MNG
Sbjct:   351 TEMNG 355

 Score = 109 (43.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
 Identities = 36/152 (23%), Positives = 71/152 (46%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNAC 75
             L+VG +   +TEA L   F     +  + + +D  TR S    ++      +A++A++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72

Query:    76 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              N + + G   P+++ ++  D  L +     +FI  L  ++    +   FS +G I   +
Sbjct:    73 -NFEVIKG--QPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCK 129

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++      S+G  F+ +ET E A  A+  +NG
Sbjct:   130 VVC-DDHGSRGFGFVHFETHEAAQQAITTMNG 160

 Score = 109 (43.4 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 23/63 (36%), Positives = 39/63 (61%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+++ ++  +  +Q L + F  FG++LS KV  D + G S+ FGFV+++    AQ A+  
Sbjct:   192 NIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDS-GHSRGFGFVNFQKHEEAQKAVMD 250

Query:   410 MNG 412
             MNG
Sbjct:   251 MNG 253


>UNIPROTKB|F1PWU8 [details] [associations]
            symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
            EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
        Length = 393

 Score = 118 (46.6 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
 Identities = 25/63 (39%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             ++F+  +  E   +++  AF  FGR+  A+V  D ATG SK +GFVS+ +   A+NAI  
Sbjct:   107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166

Query:   410 MNG 412
             M G
Sbjct:   167 MGG 169

 Score = 106 (42.4 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
 Identities = 39/163 (23%), Positives = 75/163 (46%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             L+VG + + +TEA +L +F +        +I D T      CFV     + A  A+ A +
Sbjct:     9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDPYCFVEFYEHRHAAAALAAMN 67

Query:    77 NKKTLPG------ASSPLQVKYADGE-----LERLE-H-KLFIGMLPKNVSEAEVSALFS 123
              +K +        A++P   K           +R + H  +F+G L   ++  ++ A F+
Sbjct:    68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127

Query:   124 IYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 165
              +G I D ++++  +   SKG  F+ +  K  A  A++ + G+
Sbjct:   128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 170

 Score = 103 (41.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
 Identities = 27/85 (31%), Positives = 46/85 (54%)

Query:    98 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 157
             + +   L++G L ++V+EA +  LFS  G  K+ +++  +      C F+++     A A
Sbjct:     3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFYEHRHAAA 61

Query:   158 ALEAINGKHKMEGSSVPLVVKWADT 182
             AL A+NG+ K+ G  V   V WA T
Sbjct:    62 ALAAMNGR-KIMGKEVK--VNWATT 83

 Score = 74 (31.1 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
 Identities = 18/67 (26%), Positives = 31/67 (46%)

Query:   346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 405
             P    ++   +     +Q +   F  FG+++  +VF DK       + FV + S  SA +
Sbjct:   211 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKG------YSFVRFNSHESAAH 264

Query:   406 AIAMMNG 412
             AI  +NG
Sbjct:   265 AIVSVNG 271


>ZFIN|ZDB-GENE-070620-21 [details] [associations]
            symbol:zgc:165603 "zgc:165603" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-070620-21 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
            EMBL:CABZ01080723 EMBL:CABZ01080724 EMBL:CABZ01080725
            EMBL:CABZ01080726 EMBL:CABZ01080727 EMBL:BC142894 IPI:IPI00851471
            RefSeq:NP_001092221.1 UniGene:Dr.154402 SMR:A5PLG5
            Ensembl:ENSDART00000105482 GeneID:571425 KEGG:dre:571425
            eggNOG:KOG0146 HOGENOM:HOG000286011 HOVERGEN:HBG090495 OMA:DGHESSP
            NextBio:20890554 Uniprot:A5PLG5
        Length = 155

 Score = 155 (59.6 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 28/70 (40%), Positives = 47/70 (67%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLF+GQ+P+++ E  L  +F++F  + E+ ++KD+ T   + C F+   +R+ A KA N
Sbjct:    82 IKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQN 141

Query:    74 ACHNKKTLPG 83
             A H +KTLPG
Sbjct:   142 ALHEQKTLPG 151

 Score = 133 (51.9 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 31/94 (32%), Positives = 52/94 (55%)

Query:    79 KTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS 137
             K + G S P+ +    G ++  +  KLFIG +P+N+ E ++  LF  +G I +L +L+  
Sbjct:    59 KPMNG-SEPISIHPDSGTMKDQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDR 117

Query:   138 QQ-TSKGCAFLKYETKEQALAALEAINGKHKMEG 170
                  KGCAFL Y  +E A+ A  A++ +  + G
Sbjct:   118 YTGMHKGCAFLTYCARESAIKAQNALHEQKTLPG 151


>TAIR|locus:2040625 [details] [associations]
            symbol:PAB7 "poly(A) binding protein 7" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
            UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
            SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
            GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
            OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
            Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
        Length = 609

 Score = 135 (52.6 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
 Identities = 40/150 (26%), Positives = 74/150 (49%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             L+VG +   +TE  L   F EF  +  V + KD ++  S C  +    SRQ+A+ A+   
Sbjct:    26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK- 84

Query:    76 HNKKTLPGASSPLQ--VKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 133
              N   L G    +   V+  D     + + +F+  LP++V+ A +  +F  +G I   ++
Sbjct:    85 KNNSLLNGKMIRVMWSVRAPDARRNGVGN-VFVKNLPESVTNAVLQDMFKKFGNIVSCKV 143

Query:   134 LRGSQQTSKGCAFLKYETKEQALAALEAIN 163
                    S+G  F+++E ++ A AA++ +N
Sbjct:   144 ATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173

 Score = 106 (42.4 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
 Identities = 43/155 (27%), Positives = 74/155 (47%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFA-LVD-EVNIIKDKTTRASRCCFVICPSRQEADKAVNA 74
             +FV  +P+ +T A L  MFK+F  +V  +V  ++D  +R     FV       A  A+  
Sbjct:   114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYG--FVQFEQEDAAHAAIQT 171

Query:    75 CHNKKTLPGASSPLQVKYADGELERL--EHK---LFIGMLPKNVSEAEVSALFSIYGTIK 129
              ++  T+  A   + V     + +R+  E K   L++  L  +VSE  +   F+ +G I 
Sbjct:   172 LNS--TIV-ADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIV 228

Query:   130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAING 164
              L I +   +  +G AF+ ++  E A  A E +NG
Sbjct:   229 SLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNG 263

 Score = 89 (36.4 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
 Identities = 19/64 (29%), Positives = 35/64 (54%)

Query:   349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408
             +N+++ ++     ++EL   F   G + S K+  D+  G SK FGFV + +P  A +A+ 
Sbjct:   304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVK 362

Query:   409 MMNG 412
               +G
Sbjct:   363 TFHG 366

 Score = 77 (32.2 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
 Identities = 15/63 (23%), Positives = 35/63 (55%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             NL++ ++  +  +  L   F  FG+++S  +  D+   + + + FV++++P  A+ A   
Sbjct:   202 NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAET 260

Query:   410 MNG 412
             +NG
Sbjct:   261 VNG 263

 Score = 38 (18.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query:   284 SGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANS 327
             +  +GS YP    + YP P    M+ + P  N    +     N+
Sbjct:   437 ANMIGSSYPNSEAVTYP-P----MVANAPSKNRQNRIGKLDRNA 475


>UNIPROTKB|Q800W4 [details] [associations]
            symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0017148 "negative regulation of translation" evidence=IEA]
            [GO:0042036 "negative regulation of cytokine biosynthetic process"
            evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
            spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
            HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
            KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
            UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
            EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
            RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
            Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
            InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
        Length = 372

 Score = 120 (47.3 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
 Identities = 37/155 (23%), Positives = 74/155 (47%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             L+VG + + +TEA +L +F +        +I D T      CFV     + A  A+ A +
Sbjct:     9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDPYCFVEFYEHRHAASALAAMN 67

Query:    77 NKKTLPGASSPLQVKYA----DGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
              +K +      ++V +A      + +   H  +F+G L   ++  ++ A F+ +G I D 
Sbjct:    68 GRKIM---GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 124

Query:   132 QILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 165
             ++++  +   SKG  F+ +  K  A  A++ + G+
Sbjct:   125 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 159

 Score = 118 (46.6 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
 Identities = 25/63 (39%), Positives = 38/63 (60%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             ++F+  +  E   +++  AF  FGR+  A+V  D ATG SK +GFVS+ +   A+NAI  
Sbjct:    96 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 155

Query:   410 MNG 412
             M G
Sbjct:   156 MGG 158

 Score = 100 (40.3 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
 Identities = 26/85 (30%), Positives = 46/85 (54%)

Query:    98 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 157
             + +   L++G L ++V+EA +  LFS  G  K+ +++  +      C F+++     A +
Sbjct:     3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFYEHRHAAS 61

Query:   158 ALEAINGKHKMEGSSVPLVVKWADT 182
             AL A+NG+ K+ G  V   V WA T
Sbjct:    62 ALAAMNGR-KIMGKEVK--VNWATT 83

 Score = 74 (31.1 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
 Identities = 18/67 (26%), Positives = 31/67 (46%)

Query:   346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 405
             P    ++   +     +Q +   F  FG+++  +VF DK       + FV + S  SA +
Sbjct:   200 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKG------YSFVRFNSHESAAH 253

Query:   406 AIAMMNG 412
             AI  +NG
Sbjct:   254 AIVSVNG 260


>UNIPROTKB|E1C131 [details] [associations]
            symbol:E1C131 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 EMBL:AADN02067637 EMBL:AADN02067638
            EMBL:AADN02067639 EMBL:AADN02067640 EMBL:AADN02067641
            EMBL:AADN02067642 EMBL:AADN02067643 EMBL:AADN02067644
            EMBL:AADN02067645 EMBL:AADN02067646 EMBL:AADN02067647
            EMBL:AADN02067648 EMBL:AADN02067649 EMBL:AADN02067650
            EMBL:AADN02067651 EMBL:AADN02067652 EMBL:AADN02067653
            EMBL:AADN02067654 EMBL:AADN02067655 EMBL:AADN02067656
            EMBL:AADN02067657 EMBL:AADN02067658 EMBL:AADN02067659
            IPI:IPI00822398 ProteinModelPortal:E1C131
            Ensembl:ENSGALT00000029259 OMA:YCHRESA Uniprot:E1C131
        Length = 123

 Score = 153 (58.9 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 29/72 (40%), Positives = 47/72 (65%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLF+GQ+P+++ E  L  +F+EF  + E+ ++KD+ T   + C F+    R+ A KA +
Sbjct:    52 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 111

Query:    74 ACHNKKTLPGAS 85
             A H +KTLPG S
Sbjct:   112 ALHEQKTLPGVS 123

 Score = 128 (50.1 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 28/71 (39%), Positives = 42/71 (59%)

Query:   103 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEA 161
             KLFIG +P+N+ E ++  LF  +G I +L +L+       KGCAFL Y  +E AL A  A
Sbjct:    53 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 112

Query:   162 INGKHKMEGSS 172
             ++ +  + G S
Sbjct:   113 LHEQKTLPGVS 123


>UNIPROTKB|K7EPX2 [details] [associations]
            symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 Gene3D:3.30.70.330
            HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386 EMBL:AC093332
            EMBL:AC129908 Ensembl:ENST00000587924 Uniprot:K7EPX2
        Length = 67

 Score = 153 (58.9 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 33/64 (51%), Positives = 41/64 (64%)

Query:    87 PLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCA 145
             P+QVK AD E     + KLF+GML K  SE +V  LF  +G I++  ILRG    SKGCA
Sbjct:     4 PIQVKPADSESRGGKDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCA 63

Query:   146 FLKY 149
             F+KY
Sbjct:    64 FVKY 67


>TAIR|locus:2046298 [details] [associations]
            symbol:emb2444 "embryo defective 2444" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
            KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
            RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
            SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
            GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
            OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
            Genevestigator:Q9ZU66 Uniprot:Q9ZU66
        Length = 363

 Score = 172 (65.6 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 87/309 (28%), Positives = 136/309 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             ++VG +   ++E  L  +F +   V  V + KD+ T   +   F+   S ++AD A+   
Sbjct:    27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86

Query:    76 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTI-KDLQ 132
             +  K L G   P++V  A  + + L+    LFIG L  +V E  +   FS +G I  + +
Sbjct:    87 NMIK-LHG--KPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPK 143

Query:   133 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 188
             I+R      S+G  F+ Y++ E + AA+E++ G++    S+  + V +A   DT+ E   
Sbjct:   144 IMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYL---SNRQITVSYAYKKDTKGERHG 200

Query:   189 XXXXXXXXXXNNLPNADSQHP-SLFGALPMGYAPPYNGYGYQ-ASGSYGLMQYRLPPMQN 246
                       N  P A    P +LF   P   AP  NG     A+GS   MQ    P   
Sbjct:   201 TPAERLLAATN--PTAQKSRPHTLFAMGPPSSAPQVNGLPRPFANGS---MQPVPIPAPR 255

Query:   247 QPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAM--PPSGF-VGSGYPAVPGLQYPMPY 303
             QP      PP  Q    +   P   S   P+ ++M  PP  F    G P  P  Q+ + +
Sbjct:   256 QPP-----PPPPQ--VYQTQPPSWPSQ--PQQHSMVPPPMQFRPPQGMPPPPPPQF-LNH 305

Query:   304 PGGMLGHRP 312
               G  G RP
Sbjct:   306 QQGFGGPRP 314

 Score = 114 (45.2 bits), Expect = 0.00088, P = 0.00088
 Identities = 27/66 (40%), Positives = 40/66 (60%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLS-AKVFVDKATGVSKCFGFVSYESPASAQNA 406
             GANLFI ++  +  ++ L + F AFG + S  K+  D  TG S+ FGF+SY+S  ++  A
Sbjct:   111 GANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170

Query:   407 IAMMNG 412
             I  M G
Sbjct:   171 IESMTG 176


>UNIPROTKB|E9PKU1 [details] [associations]
            symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006376 "mRNA
            splice site selection" evidence=IEA] [GO:0007286 "spermatid
            development" evidence=IEA] [GO:0031369 "translation initiation
            factor binding" evidence=IEA] [GO:0040018 "positive regulation of
            multicellular organism growth" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0007286 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040018
            GO:GO:0003676 EMBL:AC090559 HGNC:HGNC:2549 ChiTaRS:CELF1
            GO:GO:0006376 IPI:IPI00982591 ProteinModelPortal:E9PKU1 SMR:E9PKU1
            Ensembl:ENST00000528434 ArrayExpress:E9PKU1 Bgee:E9PKU1
            Uniprot:E9PKU1
        Length = 114

 Score = 152 (58.6 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 29/72 (40%), Positives = 48/72 (66%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQVP+  +E  L  +F+++  V E+N+++D++    ++  CCFV   +R+ A +A
Sbjct:    43 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102

Query:    72 VNACHNKKTLPG 83
              NA HN K LPG
Sbjct:   103 QNALHNMKVLPG 114

 Score = 128 (50.1 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 33/94 (35%), Positives = 52/94 (55%)

Query:    85 SSPLQVKYADGELERLEH------KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQ 138
             SSP+  K  +G L+  +       K+F+G +P+  SE ++  LF  YG + ++ +LR   
Sbjct:    21 SSPVSKKM-NGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRS 79

Query:   139 QT---SKGCAFLKYETKEQALAALEAINGKHKME 169
             Q    SKGC F+ + T++   AALEA N  H M+
Sbjct:    80 QNPPQSKGCCFVTFYTRK---AALEAQNALHNMK 110


>UNIPROTKB|E9PQK4 [details] [associations]
            symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006376 "mRNA
            splice site selection" evidence=IEA] [GO:0007286 "spermatid
            development" evidence=IEA] [GO:0031369 "translation initiation
            factor binding" evidence=IEA] [GO:0040018 "positive regulation of
            multicellular organism growth" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0007286 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040018
            GO:GO:0003676 EMBL:AC090559 HGNC:HGNC:2549 ChiTaRS:CELF1
            GO:GO:0006376 IPI:IPI00982054 ProteinModelPortal:E9PQK4 SMR:E9PQK4
            Ensembl:ENST00000525841 ArrayExpress:E9PQK4 Bgee:E9PQK4
            Uniprot:E9PQK4
        Length = 87

 Score = 152 (58.6 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 29/72 (40%), Positives = 48/72 (66%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRCCFVICPSRQEADKA 71
             +K+FVGQVP+  +E  L  +F+++  V E+N+++D++    ++  CCFV   +R+ A +A
Sbjct:    16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75

Query:    72 VNACHNKKTLPG 83
              NA HN K LPG
Sbjct:    76 QNALHNMKVLPG 87

 Score = 127 (49.8 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 27/70 (38%), Positives = 42/70 (60%)

Query:   103 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAAL 159
             K+F+G +P+  SE ++  LF  YG + ++ +LR   Q    SKGC F+ + T++   AAL
Sbjct:    17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRK---AAL 73

Query:   160 EAINGKHKME 169
             EA N  H M+
Sbjct:    74 EAQNALHNMK 83


>ZFIN|ZDB-GENE-020419-22 [details] [associations]
            symbol:sf3b4 "splicing factor 3b, subunit 4"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
            IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
            SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
            Uniprot:Q8JGT1
        Length = 400

 Score = 171 (65.3 bits), Expect = 4.3e-10, P = 4.3e-10
 Identities = 83/316 (26%), Positives = 130/316 (41%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAVNAC 75
             ++VG + + ++E  L  +F +   V   ++ KD+ T   +   FV   S ++AD A+   
Sbjct:    15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74

Query:    76 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 132
             +  K L G   P++V  A    + L+    +FIG L   + E  +   FS +G I    +
Sbjct:    75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131

Query:   133 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 188
             I+R      SKG AF+ + + + + AA+EA+NG++       P+ V +A   D++ E   
Sbjct:   132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188

Query:   189 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 248
                       N L  AD  H  LF   P    PP        +    +    +PP    P
Sbjct:   189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSMPTPVMTALGAAMPIPGMPP----P 240

Query:   249 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 308
             G    +PP   G    G  P +     P   A    G    G+P  P       +P GM 
Sbjct:   241 GAFPPVPP--PGTMPPGMPPGMPMPPAPGTPAPQGGGGPPPGHPPFPPAGM---HPPGM- 294

Query:   309 GHRPL--NNSPGSVSP 322
              H P+     PG V P
Sbjct:   295 PHMPMPPTGPPGMVPP 310


>UNIPROTKB|Q01085 [details] [associations]
            symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
            "apoptotic process" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
            "defense response" evidence=TAS] [GO:0005764 "lysosome"
            evidence=TAS] [GO:0006357 "regulation of transcription from RNA
            polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
            apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
            GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
            GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
            HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
            EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
            RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
            PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
            ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
            MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
            PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
            Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
            CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
            neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
            ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
            NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
            Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
        Length = 375

 Score = 120 (47.3 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             ++F+  +  E   +++ +AF  FG++  A+V  D ATG SK +GFVS+ +   A+NAI  
Sbjct:    98 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 157

Query:   410 MNG 412
             M G
Sbjct:   158 MGG 160

 Score = 112 (44.5 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
 Identities = 35/155 (22%), Positives = 74/155 (47%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             L+VG + + +TE  +L +F +        +I + T+     CFV     ++A  A+ A +
Sbjct:    11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN-DPYCFVEFYEHRDAAAALAAMN 69

Query:    77 NKKTLPGASSPLQVKYA----DGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
              +K L      ++V +A      + +   H  +F+G L   ++  ++ + F+ +G I D 
Sbjct:    70 GRKIL---GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 126

Query:   132 QILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 165
             ++++  +   SKG  F+ +  K  A  A+  + G+
Sbjct:   127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ 161

 Score = 95 (38.5 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
 Identities = 26/79 (32%), Positives = 41/79 (51%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 163
             L++G L ++V+E  +  LFS  G  K  +++         C F+++     A AAL A+N
Sbjct:    11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYC-FVEFYEHRDAAAALAAMN 69

Query:   164 GKHKMEGSSVPLVVKWADT 182
             G+ K+ G  V   V WA T
Sbjct:    70 GR-KILGKEVK--VNWATT 85

 Score = 72 (30.4 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
 Identities = 18/67 (26%), Positives = 31/67 (46%)

Query:   346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 405
             P    ++   I     DQ +   F  FG+++  +VF +K       + FV + +  SA +
Sbjct:   202 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVRFSTHESAAH 255

Query:   406 AIAMMNG 412
             AI  +NG
Sbjct:   256 AIVSVNG 262


>UNIPROTKB|F2Z4H8 [details] [associations]
            symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=IEA] [GO:0008284 "positive regulation of
            cell proliferation" evidence=IEA] [GO:0007281 "germ cell
            development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
            GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
            EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
            UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
            Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
            NextBio:20899153 Uniprot:F2Z4H8
        Length = 380

 Score = 120 (47.3 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             ++F+  +  E   +++ +AF  FG++  A+V  D ATG SK +GFVS+ +   A+NAI  
Sbjct:    98 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 157

Query:   410 MNG 412
             M G
Sbjct:   158 MGG 160

 Score = 112 (44.5 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
 Identities = 35/155 (22%), Positives = 74/155 (47%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             L+VG + + +TE  +L +F +        +I + T+     CFV     ++A  A+ A +
Sbjct:    11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN-DPYCFVEFYEHRDAAAALAAMN 69

Query:    77 NKKTLPGASSPLQVKYA----DGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
              +K L      ++V +A      + +   H  +F+G L   ++  ++ + F+ +G I D 
Sbjct:    70 GRKIL---GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 126

Query:   132 QILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 165
             ++++  +   SKG  F+ +  K  A  A+  + G+
Sbjct:   127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ 161

 Score = 95 (38.5 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
 Identities = 26/79 (32%), Positives = 41/79 (51%)

Query:   104 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 163
             L++G L ++V+E  +  LFS  G  K  +++         C F+++     A AAL A+N
Sbjct:    11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYC-FVEFYEHRDAAAALAAMN 69

Query:   164 GKHKMEGSSVPLVVKWADT 182
             G+ K+ G  V   V WA T
Sbjct:    70 GR-KILGKEVK--VNWATT 85

 Score = 72 (30.4 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
 Identities = 18/67 (26%), Positives = 31/67 (46%)

Query:   346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 405
             P    ++   I     DQ +   F  FG+++  +VF +K       + FV + +  SA +
Sbjct:   202 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVRFSTHESAAH 255

Query:   406 AIAMMNG 412
             AI  +NG
Sbjct:   256 AIVSVNG 262


>UNIPROTKB|H7BY49 [details] [associations]
            symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
            HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
        Length = 152

 Score = 105 (42.0 bits), Expect = 0.00036, P = 0.00036
 Identities = 33/141 (23%), Positives = 66/141 (46%)

Query:    18 FVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHN 77
             +VG + + +TEA +L +F +        +I D T      CFV     + A  A+ A + 
Sbjct:     2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDPYCFVEFHEHRHAAAALAAMNG 60

Query:    78 KKTLPGASSPLQVKYA----DGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
             +K +      ++V +A      + +   H  +F+G L   ++  ++ A F+ +G I D +
Sbjct:    61 RKIM---GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR 117

Query:   133 ILRG-SQQTSKGCAFLKYETK 152
             +++  +   SKG  F+ +  K
Sbjct:   118 VVKDMATGKSKGYGFVSFFNK 138

 Score = 100 (40.3 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
 Identities = 26/78 (33%), Positives = 43/78 (55%)

Query:   105 FIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             ++G L ++V+EA +  LFS  G  K+ +++  +      C F+++     A AAL A+NG
Sbjct:     2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAAMNG 60

Query:   165 KHKMEGSSVPLVVKWADT 182
             + K+ G  V   V WA T
Sbjct:    61 R-KIMGKEVK--VNWATT 75

 Score = 94 (38.1 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSY 397
             ++F+  +  E   +++  AF  FGR+  A+V  D ATG SK +GFVS+
Sbjct:    88 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 135


>UNIPROTKB|Q2L7G6 [details] [associations]
            symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
            Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
            GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
            HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
            SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
            Uniprot:Q2L7G6
        Length = 595

 Score = 163 (62.4 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
 Identities = 45/177 (25%), Positives = 95/177 (53%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAV 72
             ++K+FVG++P+ + E +L+ +F++   + ++ ++ D  +  +R   F+    ++ A +AV
Sbjct:   126 KIKVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAV 185

Query:    73 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDL 131
               C + +  PG    + +  A+       ++LF+G +PKN ++  +   FS +   + D+
Sbjct:   186 KLCDSYEIRPGKHLGVCISVAN-------NRLFVGSIPKNKTKENILEEFSKVTEGLVDV 238

Query:   132 QILR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
              +      ++ ++G  FL+YE  K  A A    ++GK K+ G+ V   V+WAD  +E
Sbjct:   239 ILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV--TVEWADPVEE 293

 Score = 51 (23.0 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             LF+ ++     ++ L  +F  FG++   K   D        + FV +E   +A  A+  M
Sbjct:   305 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 356

Query:   411 NG 412
             NG
Sbjct:   357 NG 358


>UNIPROTKB|F6UBL3 [details] [associations]
            symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
            EMBL:AC009690 IPI:IPI00909307 HGNC:HGNC:14059
            Ensembl:ENST00000437872 Bgee:F6UBL3 Uniprot:F6UBL3
        Length = 133

 Score = 147 (56.8 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 29/70 (41%), Positives = 45/70 (64%)

Query:    15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73
             +KLFVGQ+P+ + E  L  +F+EF  + E+ ++KD+ T   + C F+   +R  A KA +
Sbjct:    17 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 76

Query:    74 ACHNKKTLPG 83
             A H +KTLPG
Sbjct:    77 ALHEQKTLPG 86

 Score = 117 (46.2 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 24/69 (34%), Positives = 40/69 (57%)

Query:   103 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEA 161
             KLF+G +P+ + E ++  LF  +G I +L +L+       KGCAFL Y  ++ AL A  A
Sbjct:    18 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 77

Query:   162 INGKHKMEG 170
             ++ +  + G
Sbjct:    78 LHEQKTLPG 86


>UNIPROTKB|F1N4Q4 [details] [associations]
            symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
            CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
            RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
            Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
            NextBio:20869865 Uniprot:F1N4Q4
        Length = 382

 Score = 107 (42.7 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
 Identities = 23/67 (34%), Positives = 36/67 (53%)

Query:   346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 405
             PPG  ++I ++ +   D++L   F +FG +  AKV V+   G  K FG + + S   A  
Sbjct:   299 PPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE--VGQGKGFGVICFSSFEEATK 356

Query:   406 AIAMMNG 412
             A+  MNG
Sbjct:   357 AVDEMNG 363

 Score = 104 (41.7 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
 Identities = 37/158 (23%), Positives = 72/158 (45%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAV---N 73
             +F+  + K +    L  +F  F  +    ++ D    +    +V   S   A++A+   N
Sbjct:   108 IFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166

Query:    74 AC--HNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN----VSEAEVSALFSIYGT 127
                 +N++   G     + + A  E+   +   F  +  KN    + + ++  LFS YG 
Sbjct:   167 GVRLNNRQVYVGRFKFPEERAA--EVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGP 224

Query:   128 IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
              + ++++R S   SKG  F++YET E A  A+  ++GK
Sbjct:   225 TESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGK 262

 Score = 103 (41.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 23/63 (36%), Positives = 36/63 (57%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+F+ +   +  D +L   F  +G   S KV  D ++G SK FGFV YE+  +AQ A+  
Sbjct:   200 NVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRD-SSGKSKGFGFVRYETHEAAQKAVLD 258

Query:   410 MNG 412
             ++G
Sbjct:   259 LHG 261

 Score = 91 (37.1 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
 Identities = 37/153 (24%), Positives = 67/153 (43%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L+VG +   +TE  L   F+    +    I +D  TR+     +V      +A+ A+
Sbjct:    17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76

Query:    73 NACHNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N   N   + G    L     D  L +     +FI  L K++    +  LFS +G+I   
Sbjct:    77 NTM-NFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSC 135

Query:   132 QILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             +++      SKG A++ +++   A  A+  +NG
Sbjct:   136 KVVC-DDNGSKGYAYVHFDSLAAANRAIWHMNG 167


>UNIPROTKB|F1LUZ6 [details] [associations]
            symbol:Hnrnpr "Protein Hnrnpr" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:631348 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
            IPI:IPI00391659 ProteinModelPortal:F1LUZ6
            Ensembl:ENSRNOT00000015971 OMA:MENVERT ArrayExpress:F1LUZ6
            Uniprot:F1LUZ6
        Length = 381

 Score = 154 (59.3 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 44/175 (25%), Positives = 93/175 (53%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNA 74
             ++FVG++P+ + E +L+ +F++   + ++ ++ D  +  +R   F+    ++ A +AV  
Sbjct:   135 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 194

Query:    75 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 133
             C + +  PG    + +  A+       ++LF+G +PKN ++  +   FS +   + D+ +
Sbjct:   195 CDSYEIRPGKHLGVCISVAN-------NRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 247

Query:   134 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
                   ++ ++G  FL+YE  K  A A    ++GK K+ G+ V   V+WAD  +E
Sbjct:   248 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV--TVEWADPVEE 300

 Score = 51 (23.0 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             LF+ ++     ++ L  +F  FG++   K   D        + FV +E   +A  A+  M
Sbjct:   312 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 363

Query:   411 NG 412
             NG
Sbjct:   364 NG 365


>RGD|2322083 [details] [associations]
            symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
            CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
            UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
            KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
        Length = 382

 Score = 113 (44.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+F+ +   +  D++L   F  +G   S KV  D ATG SK FGFV YE+  +AQ A+  
Sbjct:   200 NVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRD-ATGKSKGFGFVRYETHEAAQKAVLE 258

Query:   410 MNG 412
             ++G
Sbjct:   259 LHG 261

 Score = 105 (42.0 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
 Identities = 23/67 (34%), Positives = 35/67 (52%)

Query:   346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 405
             PPG  ++I ++ +   D++L   F  FG +  AKV ++   G  K FG V + S   A  
Sbjct:   299 PPGVPIYIKNLDETINDEKLKEEFSLFGSISRAKVMME--VGQGKGFGVVCFSSFEEASK 356

Query:   406 AIAMMNG 412
             A+  MNG
Sbjct:   357 AVNEMNG 363

 Score = 104 (41.7 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
 Identities = 36/158 (22%), Positives = 72/158 (45%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAV---N 73
             +F+  + K +    L  +F  F  +    ++ D    +    +V   S   A++A+   N
Sbjct:   108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166

Query:    74 AC--HNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN----VSEAEVSALFSIYGT 127
                 +N++   G     + + A  E+   +   F  +  KN    + + ++  LFS YG 
Sbjct:   167 GVRLNNRQVYVGRFKFPEERAA--EVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGP 224

Query:   128 IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
              + ++++R +   SKG  F++YET E A  A+  ++GK
Sbjct:   225 TESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGK 262

 Score = 90 (36.7 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
 Identities = 37/153 (24%), Positives = 66/153 (43%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L+VG +   +TE  L   F+    +    I +D  TR+     +V      +A+ A+
Sbjct:    17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76

Query:    73 NACHNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N   N   + G    L     D  L +     +FI  L K++    +  LFS +G I   
Sbjct:    77 NTM-NFDLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135

Query:   132 QILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             +++      SKG A++ +++   A  A+  +NG
Sbjct:   136 KVVC-DDNGSKGYAYVHFDSLAAANRAIWHMNG 167


>UNIPROTKB|F1NH81 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
            EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
            Uniprot:F1NH81
        Length = 573

 Score = 121 (47.7 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query:   348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407
             G NL++ ++     D+ L   F  FG + SAKV ++   G SK FGFV + SP  A  A+
Sbjct:   229 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 286

Query:   408 AMMNG 412
               MNG
Sbjct:   287 TEMNG 291

 Score = 121 (47.7 bits), Expect = 0.00030, P = 0.00030
 Identities = 27/63 (42%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N++I +  ++  D+ L   F  FG  LS KV  D++ G SK FGFVS+E    AQ A+  
Sbjct:   128 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 186

Query:   410 MNG 412
             MNG
Sbjct:   187 MNG 189

 Score = 117 (46.2 bits), Expect = 0.00083, P = 0.00083
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+FI ++ +   ++ L + F AFG +LS KV  D+  G SK +GFV +E+  +A+ AI  
Sbjct:    36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 93

Query:   410 MNG 412
             MNG
Sbjct:    94 MNG 96

 Score = 91 (37.1 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
 Identities = 30/163 (18%), Positives = 72/163 (44%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76
             +F+  + K +    L   F  F  +    ++ D+   +    FV   +++ A++A+   +
Sbjct:    37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 95

Query:    77 -----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130
                  ++K   G     + + A+ G   +    ++I    +++ +  +  LF  +G    
Sbjct:    96 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALS 155

Query:   131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173
             ++++      SKG  F+ +E  E A  A++ +NGK ++ G  +
Sbjct:   156 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 197


>UNIPROTKB|Q3ZC34 [details] [associations]
            symbol:RBMS2 "RNA-binding motif,
            single-stranded-interacting protein 2" species:9913 "Bos taurus"
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GeneTree:ENSGT00630000089747 eggNOG:NOG320163 HOGENOM:HOG000008467
            HOVERGEN:HBG053108 OrthoDB:EOG469QV2 EMBL:BC102935 IPI:IPI00706755
            RefSeq:NP_001029537.1 UniGene:Bt.87430 HSSP:Q15434
            ProteinModelPortal:Q3ZC34 SMR:Q3ZC34 PRIDE:Q3ZC34
            Ensembl:ENSBTAT00000023705 GeneID:509798 KEGG:bta:509798 CTD:5939
            InParanoid:Q3ZC34 OMA:SQQMAPP NextBio:20869135 Uniprot:Q3ZC34
        Length = 407

 Score = 163 (62.4 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 83/320 (25%), Positives = 132/320 (41%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L++  +    T+  L+ + + +  +     I DKTT   +   FV   S   A KAV
Sbjct:    55 KTNLYIRGLQPSTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAV 114

Query:    73 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 132
              A          +S +Q + A  + E+    L+I  LP ++ E E+  +   +G +   +
Sbjct:   115 TALK--------ASGVQAQMAKQQ-EQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTR 165

Query:   133 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-K----MEGSSVPLVVKWADTEKEXX 187
             ILR +  TS+G  F + E+ E+  A +   NGK+ K    +   S PL+ K+AD   +  
Sbjct:   166 ILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKR 225

Query:   188 XXXXXXXXXXXNNLPNADSQHPSLF----GALPMGYAP-PYNGYGYQASGSYGLMQYRLP 242
                            N D    +L      AL  G+ P PYN    +      L  Y   
Sbjct:   226 QNQGKFVQNGRAWPRNGDMGGMALTYDPSTALQNGFYPAPYNLAPNRMLTQSALSPYLPS 285

Query:   243 PMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMP 302
             PM +          V Q + ++  SP   S M  ++Y M PSG V       PG+ +P+ 
Sbjct:   286 PMTSYQR-------VTQTSPLQAPSP---SWMHHQSYLMQPSGSV-----LTPGMDHPIS 330

Query:   303 Y-PGGMLGHRPLNNSPGSVS 321
               P  M+G  PL    G +S
Sbjct:   331 LQPASMVG--PLTQQLGHLS 348

 Score = 131 (51.2 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 31/109 (28%), Positives = 52/109 (47%)

Query:   304 PG-GMLGHRPLNNSPG-SVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFG 361
             PG    G+   N  P  S+S  +A  +P              +     NL+I  +     
Sbjct:     9 PGISTFGYNKNNKKPYVSLSQQMAPPSPSSSTPNSSSGSTAHDQLSKTNLYIRGLQPSTT 68

Query:   362 DQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             DQ+L    Q++G+++S K  +DK T   K +GFV ++SP++AQ A+  +
Sbjct:    69 DQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 117


>FB|FBgn0038826 [details] [associations]
            symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
            spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
            [GO:0007310 "oocyte dorsal/ventral axis specification"
            evidence=IMP] [GO:0046843 "dorsal appendage formation"
            evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
            GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
            FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
            RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
            STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
            InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
        Length = 711

 Score = 153 (58.9 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
 Identities = 46/175 (26%), Positives = 90/175 (51%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNA 74
             ++F G++PK M E +L+ +F+   ++ ++ ++ D  T  +R   FV   +R+ A  AV  
Sbjct:   165 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 224

Query:    75 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 133
               N +  PG    L++  +   L     +LF+G +PK+  + E+   F  +   + ++ I
Sbjct:   225 LDNHEIKPGKC--LKINISVPNL-----RLFVGNIPKSKGKDEILEEFGKLTAGLYEVII 277

Query:   134 LRG--SQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
                   ++ ++G  FL+YE+ K  +LA      G+ K+ G  +  +V WAD ++E
Sbjct:   278 YSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI--IVDWADPQEE 330

 Score = 58 (25.5 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             L++ ++ Q+  + +L   F+ +G+V   K   D        + F+ +E   SA  A+  +
Sbjct:   342 LYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKD--------YAFIHFEDRDSAVEAMRGL 393

Query:   411 NG 412
             NG
Sbjct:   394 NG 395


>RGD|631348 [details] [associations]
            symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
            species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
            "ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
            step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
            HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
            IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
            ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
            UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
            Uniprot:Q811S1
        Length = 632

 Score = 158 (60.7 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
 Identities = 45/175 (25%), Positives = 93/175 (53%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNA 74
             ++FVG++P+ + E +L+ +F+E   + ++ ++ D  +  +R   F+    ++ A +AV  
Sbjct:   166 EVFVGKIPRDLYEDELVPLFEEAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225

Query:    75 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 133
             C + +  PG    + +  A+       ++LF+G +PKN ++  +   FS +   + D+ +
Sbjct:   226 CDSYEIRPGKHLGVCISVAN-------NRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 278

Query:   134 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 185
                   ++ ++G  FL+YE  K  A A    ++GK K+ G+ V   V+WAD  +E
Sbjct:   279 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV--TVEWADPVEE 331

 Score = 117 (46.2 bits), Expect = 0.00095, P = 0.00095
 Identities = 82/328 (25%), Positives = 125/328 (38%)

Query:    16 KLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASR-CCFVICPSRQEADKA- 71
             +LFVG +PK+ T+  +L  F +    LVD +   +    + +R  CF+     + A +A 
Sbjct:   247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306

Query:    72 -------VNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSI 124
                    V    N  T+  A  P  V+  D E+      LF+  L   V+E  +   FS 
Sbjct:   307 RRLMSGKVKVWGNVVTVEWAD-P--VEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 363

Query:   125 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV-KWADTE 183
             +G ++ ++ L       K  AF+ +E +  A+ A++ +NGK ++EG  + +V+ K  D +
Sbjct:   364 FGKLERVKKL-------KDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVLAKPPDKK 415

Query:   184 -KEXXXXXXXXXXXXXNNL---PNADSQHP----SLFGALPMGYAPPYNGYGYQASGSYG 235
              KE              +    P      P       G    GY P Y GY       YG
Sbjct:   416 RKERQAARQASRSTAYEDYYYHPPPRMPPPMRGRGRGGRGGYGYPPDYYGYEDYYDDYYG 475

Query:   236 LMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGP---RNY-AMPPSGFVGSGY 291
                +        P ++G     + G A+RG          P   R   A PP G  G   
Sbjct:   476 YDYHDYRGGYEDP-YYGY----DDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQ 530

Query:   292 PAVPGLQYPMPYPGGMLGHRPLNNSPGS 319
                P L  P    GG  G        GS
Sbjct:   531 RGAP-LGPPRGSRGGRGGPAQQQRGRGS 557

 Score = 51 (23.0 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query:   351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410
             LF+ ++     ++ L  +F  FG++   K   D        + FV +E   +A  A+  M
Sbjct:   343 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 394

Query:   411 NG 412
             NG
Sbjct:   395 NG 396

 Score = 47 (21.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 19/66 (28%), Positives = 24/66 (36%)

Query:   218 GYAPPYNGYGYQAS-GSYGLMQYRLP--PMQNQPGFHGIIPPVNQGNAMRGASPDLSSNM 274
             G  PP  G G     G  G  Q   P  P +   G  G      +G   RGA  +   N+
Sbjct:   509 GAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGARGNRGGNV 568

Query:   275 GPRNYA 280
             G +  A
Sbjct:   569 GGKRKA 574


>UNIPROTKB|F1PQV8 [details] [associations]
            symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
            GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
            EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
            Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
            Uniprot:F1PQV8
        Length = 382

 Score = 109 (43.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query:   350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409
             N+F+ +   +  D++L   F  +G   S KV  D A+G SK FGFV YE+  +AQ A+  
Sbjct:   200 NVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLD 258

Query:   410 MNG 412
             ++G
Sbjct:   259 LHG 261

 Score = 108 (43.1 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
 Identities = 24/67 (35%), Positives = 36/67 (53%)

Query:   346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 405
             PPG  ++I ++ +   D++L   F +FG +  AKV V+   G  K FG V + S   A  
Sbjct:   299 PPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE--VGQGKGFGVVCFSSFEDATK 356

Query:   406 AIAMMNG 412
             A+  MNG
Sbjct:   357 AVDEMNG 363

 Score = 99 (39.9 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
 Identities = 35/158 (22%), Positives = 72/158 (45%)

Query:    17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAV---N 73
             +F+  + K +    L  +F  F  +    ++ D    +    +V   S   A++A+   N
Sbjct:   108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166

Query:    74 AC--HNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN----VSEAEVSALFSIYGT 127
                 +N++   G     + + A  E+   +   F  +  KN    + + ++  +FS YG 
Sbjct:   167 GVRLNNRQVYVGRFKFPEERAA--EVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGP 224

Query:   128 IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165
              + ++++R +   SKG  F++YET E A  A+  ++GK
Sbjct:   225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGK 262

 Score = 90 (36.7 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
 Identities = 37/153 (24%), Positives = 66/153 (43%)

Query:    14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC-FVICPSRQEADKAV 72
             +  L+VG +   +TE  L   F+    +    I +D  TR+     +V      +A+ A+
Sbjct:    17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76

Query:    73 NACHNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131
             N   N   + G    L     D  L +     +FI  L K++    +  LFS +G I   
Sbjct:    77 NTM-NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135

Query:   132 QILRGSQQTSKGCAFLKYETKEQALAALEAING 164
             +++      SKG A++ +++   A  A+  +NG
Sbjct:   136 KVVC-DDNGSKGYAYVHFDSLAAANRAIWHMNG 167

WARNING:  HSPs involving 519 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.134   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      434       386   0.00092  117 3  11 22  0.43    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  769
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  233 KB (2126 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  33.85u 0.12s 33.97t   Elapsed:  00:00:02
  Total cpu time:  33.91u 0.13s 34.04t   Elapsed:  00:00:02
  Start:  Mon May 20 23:22:50 2013   End:  Mon May 20 23:22:52 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with RBP-DR1 RBP-DR1 RBP-DR1 AT4G03110	protein from Arabidopsis thaliana	1.2e-143
BLAST match view associations BLAST with BRN2 BRN2 BRN2 AT1G03457	protein from Arabidopsis thaliana	9.7e-96
BLAST match view associations BLAST with bru-2 bru-2 bru-2 bruno-2	protein from Drosophila melanogaster	4.0e-64
BLAST match view associations BLAST with celf1 celf1 celf1 cugbp, Elav-like family member 1	gene_product from Danio rerio	7.7e-64
BLAST match view associations BLAST with DDB_G0291486 DDB_G0291486 DDB_G0291486 putative splicing regulator	gene from Dictyostelium discoideum	9.9e-64
BLAST match view associations BLAST with celf3a celf3a celf3a cugbp, Elav-like family member 3a	gene_product from Danio rerio	2.0e-63
BLAST match view associations BLAST with CELF1 CELF1 CELF1 CUGBP Elav-like family member 1	protein from Gallus gallus	2.1e-63
BLAST match view associations BLAST with CELF3 CELF3 CELF3 CUGBP Elav-like family member 3	protein from Bos taurus	8.8e-63
BLAST match view associations BLAST with Celf3 Celf3 Celf3 CUGBP, Elav-like family member 3	protein from Mus musculus	4.8e-62
BLAST match view associations BLAST with celf4 celf4 celf4 CUGBP, Elav-like family member 4	gene_product from Danio rerio	6.1e-62
BLAST match view associations BLAST with tnrc4-b tnrc4-b tnrc4-b CUGBP Elav-like family member 3-B	protein from Xenopus laevis	7.8e-62
BLAST match view associations BLAST with CELF3 CELF3 CELF3 CUGBP Elav-like family member 3	protein from Homo sapiens	7.8e-62
BLAST match view associations BLAST with tnrc4-a tnrc4-a tnrc4-a CUGBP Elav-like family member 3-A	protein from Xenopus laevis	1.6e-61
BLAST match view associations BLAST with CELF3 CELF3 CELF3 CUGBP Elav-like family member 3	protein from Homo sapiens	2.0e-61
BLAST match view associations BLAST with Celf1 Celf1 Celf1 CUGBP, Elav-like family member 1	protein from Mus musculus	2.0e-61
BLAST match view associations BLAST with Celf1 Celf1 Celf1 CUGBP, Elav-like family member 1	gene from Rattus norvegicus	2.0e-61
BLAST match view associations BLAST with CUGBP1 CUGBP1 CUGBP1 CUGBP1 protein	protein from Bos taurus	2.6e-61
BLAST match view associations BLAST with CELF1 CELF1 CELF1 Uncharacterized protein	protein from Canis lupus familiaris	2.6e-61
BLAST match view associations BLAST with CELF1 CELF1 CELF1 CUG triplet repeat, RNA binding protein 1, isoform CRA_c	protein from Homo sapiens	2.6e-61
BLAST match view associations BLAST with CELF1 CELF1 CELF1 CUGBP Elav-like family member 1	protein from Homo sapiens	2.6e-61
BLAST match view associations BLAST with aret aret aret arrest	protein from Drosophila melanogaster	5.4e-61
BLAST match view associations BLAST with CELF1 CELF1 CELF1 CUGBP Elav-like family member 1	protein from Gallus gallus	8.8e-61
BLAST match view associations BLAST with Celf3 Celf3 Celf3 CUGBP, Elav-like family member 3	gene from Rattus norvegicus	1.1e-60
BLAST match view associations BLAST with CELF2 CELF2 CELF2 CUGBP Elav-like family member 2	protein from Gallus gallus	1.1e-60
BLAST match view associations BLAST with CELF2 CELF2 CELF2 CUGBP Elav-like family member 2	protein from Gallus gallus	1.1e-60
BLAST match view associations BLAST with CELF2 CELF2 CELF2 CUGBP Elav-like family member 2	protein from Gallus gallus	1.1e-60
BLAST match view associations BLAST with CELF2 CELF2 CELF2 Uncharacterized protein	protein from Canis lupus familiaris	1.1e-60
BLAST match view associations BLAST with CELF2 CELF2 CELF2 CUGBP Elav-like family member 2	protein from Homo sapiens	1.1e-60
BLAST match view associations BLAST with CELF2 CELF2 CELF2 CUGBP Elav-like family member 2	protein from Homo sapiens	1.1e-60
BLAST match view associations BLAST with CELF2 CELF2 CELF2 CUGBP Elav-like family member 2	protein from Homo sapiens	1.1e-60
BLAST match view associations BLAST with Celf2 Celf2 Celf2 CUGBP, Elav-like family member 2	protein from Mus musculus	1.1e-60
BLAST match view associations BLAST with Celf2 Celf2 Celf2 CUGBP, Elav-like family member 2	gene from Rattus norvegicus	1.1e-60
BLAST match view associations BLAST with celf2 celf2 celf2 cugbp, Elav-like family member 2	gene_product from Danio rerio	2.1e-60
BLAST match view associations BLAST with CELF5 CELF5 CELF5 CUGBP Elav-like family member 5	protein from Homo sapiens	2.3e-60
BLAST match view associations BLAST with CELF2 CELF2 CELF2 CUGBP Elav-like family member 2	protein from Gallus gallus	2.3e-60
BLAST match view associations BLAST with CELF5 CELF5 CELF5 Uncharacterized protein	protein from Canis lupus familiaris	7.8e-60
BLAST match view associations BLAST with CELF1 CELF1 CELF1 CUGBP Elav-like family member 1	protein from Pongo abelii	8.6e-60
BLAST match view associations BLAST with CELF3 CELF3 CELF3 Uncharacterized protein	protein from Canis lupus familiaris	2.7e-59
BLAST match view associations BLAST with CELF3 CELF3 CELF3 Uncharacterized protein	protein from Sus scrofa	4.2e-59
BLAST match view associations BLAST with CELF3 CELF3 CELF3 CUGBP Elav-like family member 3	protein from Homo sapiens	8.8e-59
BLAST match view associations BLAST with celf5 celf5 celf5 cugbp, Elav-like family member 5	gene_product from Danio rerio	2.1e-58
BLAST match view associations BLAST with Celf6 Celf6 Celf6 CUGBP, Elav-like family member 6	protein from Mus musculus	9.6e-57
BLAST match view associations BLAST with Celf6 Celf6 Celf6 CUGBP, Elav-like family member 6	gene from Rattus norvegicus	9.6e-57
BLAST match view associations BLAST with CELF6 CELF6 CELF6 Uncharacterized protein	protein from Canis lupus familiaris	4.8e-56
BLAST match view associations BLAST with CELF6 CELF6 CELF6 Uncharacterized protein	protein from Sus scrofa	5.3e-56
BLAST match view associations BLAST with etr-1 etr-1 etr-1	gene from Caenorhabditis elegans	7.0e-56
BLAST match view associations BLAST with CELF6 CELF6 CELF6 Uncharacterized protein	protein from Bos taurus	8.6e-56
BLAST match view associations BLAST with CELF6 CELF6 CELF6 CUGBP Elav-like family member 6	protein from Homo sapiens	1.1e-55
BLAST match view associations BLAST with celf3b celf3b celf3b cugbp, Elav-like family member 3b	gene_product from Danio rerio	1.6e-55
BLAST match view associations BLAST with unc-75 unc-75 unc-75	gene from Caenorhabditis elegans	2.5e-55
BLAST match view associations BLAST with CELF4 CELF4 CELF4 CUGBP Elav-like family member 4	protein from Homo sapiens	1.4e-54
BLAST match view associations BLAST with Celf4 Celf4 Celf4 CUGBP, Elav-like family member 4	protein from Mus musculus	6.6e-52
BLAST match view associations BLAST with DDB_G0270634 DDB_G0270634 DDB_G0270634 putative splicing regulator	gene from Dictyostelium discoideum	2.0e-51
BLAST match view associations BLAST with CELF5 CELF5 CELF5 Uncharacterized protein	protein from Sus scrofa	3.3e-51
BLAST match view associations BLAST with BRUNOL6 BRUNOL6 BRUNOL6 Uncharacterized protein	protein from Gallus gallus	2.7e-49
BLAST match view associations BLAST with bru-3 bru-3 bru-3 bruno-3	protein from Drosophila melanogaster	6.0e-45
BLAST match view associations BLAST with F1MD42 F1MD42 F1MD42 Uncharacterized protein	protein from Bos taurus	7.4e-45
BLAST match view associations BLAST with CELF4 CELF4 CELF4 Uncharacterized protein	protein from Gallus gallus	4.7e-44
BLAST match view associations BLAST with BRUNOL6 BRUNOL6 BRUNOL6 Uncharacterized protein	protein from Gallus gallus	2.0e-43
BLAST match view associations BLAST with Celf4 Celf4 Celf4 CUGBP, Elav-like family member 4	gene from Rattus norvegicus	2.0e-43
BLAST match view associations BLAST with LOC100851458 LOC100851458 LOC100851458 Uncharacterized protein	protein from Bos taurus	2.1e-43
BLAST match view associations BLAST with CELF2 CELF2 CELF2 cDNA FLJ51739, highly similar to Homo sapiens CUG triplet repeat, RNA binding protein 2 (CUGBP2), transcript variant 2, mRNA	protein from Homo sapiens	3.4e-43
BLAST match view associations BLAST with BRUNOL4 BRUNOL4 BRUNOL4 BRUNOL4 protein	protein from Bos taurus	2.0e-40
BLAST match view associations BLAST with CELF4 CELF4 CELF4 CUGBP Elav-like family member 4	protein from Macaca fascicularis	2.6e-40
BLAST match view associations BLAST with P0415D04.46-1 P0415D04.46-1 P0415D04.46-1 FCA gamma protein	protein from Oryza sativa Japonica Group	5.5e-40
BLAST match view associations BLAST with Q6WQT6 Q6WQT6 Q6WQT6 Flowering time control protein isoform OsFCA-1	protein from Oryza sativa Indica Group	5.5e-40
BLAST match view associations BLAST with CELF4 CELF4 CELF4 CUGBP Elav-like family member 4	protein from Homo sapiens	5.5e-38
BLAST match view associations BLAST with CELF4 CELF4 CELF4 CUGBP Elav-like family member 4	protein from Pongo abelii	5.5e-38
BLAST match view associations BLAST with CELF4 CELF4 CELF4 Uncharacterized protein	protein from Sus scrofa	2.3e-36
BLAST match view associations BLAST with CELF6 CELF6 CELF6 cDNA FLJ42868 fis, clone BRHIP2021615, highly similar to Homo sapiens bruno-like 6, RNA binding protein, mRNA	protein from Homo sapiens	2.7e-36
BLAST match view associations BLAST with Celf5 Celf5 Celf5 CUGBP, Elav-like family member 5	gene from Rattus norvegicus	1.1e-34
BLAST match view associations BLAST with CELF1 CELF1 CELF1 Uncharacterized protein	protein from Sus scrofa	3.8e-33
BLAST match view associations BLAST with H9L0T2 H9L0T2 H9L0T2 Uncharacterized protein	protein from Gallus gallus	9.1e-29
BLAST match view associations BLAST with TNRC4 TNRC4 TNRC4 Trinucleotide repeat containing 4	protein from Bos taurus	8.4e-26
BLAST match view associations BLAST with celf4 celf4 celf4 CUGBP Elav-like family member 4	protein from Xenopus (Silurana) tropicalis	8.7e-25
BLAST match view associations BLAST with CELF2 CELF2 CELF2 Uncharacterized protein	protein from Sus scrofa	4.2e-24
BLAST match view associations BLAST with CELF3 CELF3 CELF3 CUGBP Elav-like family member 3	protein from Homo sapiens	3.6e-22
BLAST match view associations BLAST with CELF4 CELF4 CELF4 CUGBP Elav-like family member 4	protein from Homo sapiens	3.6e-22
BLAST match view associations BLAST with CELF1 CELF1 CELF1 CUGBP Elav-like family member 1	protein from Gallus gallus	1.1e-21
BLAST match view associations BLAST with MAL8P1.40 MAL8P1.40 MAL8P1.40 RNA-binding protein, putative	gene from Plasmodium falciparum	1.7e-21
BLAST match view associations BLAST with MAL8P1.40 MAL8P1.40 MAL8P1.40 RNA binding protein, putative	protein from Plasmodium falciparum 3D7	1.7e-21
BLAST match view associations BLAST with CELF2 CELF2 CELF2 CUGBP Elav-like family member 2	protein from Gallus gallus	2.1e-21
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 ELAV (Embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	protein from Bos taurus	9.2e-21
BLAST match view associations BLAST with AT2G47310 AT2G47310 AT2G47310	protein from Arabidopsis thaliana	2.5e-20
BLAST match view associations BLAST with CELF4 CELF4 CELF4 CUGBP Elav-like family member 4	protein from Homo sapiens	2.9e-20
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 ELAV-like 1 (Hu antigen R)	protein from Sus scrofa	4.8e-20
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 ELAV-like protein 1	protein from Homo sapiens	6.1e-20
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 Uncharacterized protein	protein from Canis lupus familiaris	7.9e-20
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 Uncharacterized protein	protein from Gallus gallus	1.1e-19
BLAST match view associations BLAST with ELAVL1 ELAVL1 ELAVL1 cDNA FLJ60076, highly similar to ELAV-like protein 1	protein from Homo sapiens	1.3e-19
BLAST match view associations BLAST with elavl3 elavl3 elavl3 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	gene_product from Danio rerio	1.4e-19
BLAST match view associations BLAST with Elavl1 Elavl1 Elavl1 ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein from Mus musculus	2.0e-19
BLAST match view associations BLAST with Elavl1 Elavl1 Elavl1 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	gene from Rattus norvegicus	2.0e-19
BLAST match view associations BLAST with elavl1-b elavl1-b elavl1-b ELAV-like protein 1-B	protein from Xenopus laevis	1.2e-18
BLAST match view associations BLAST with CELF5 CELF5 CELF5 cDNA FLJ52259, highly similar to Homo sapiens bruno-like 5, RNA binding protein, mRNA	protein from Homo sapiens	1.3e-18
BLAST match view associations BLAST with Elavl3 Elavl3 Elavl3 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	protein from Mus musculus	1.3e-18
BLAST match view associations BLAST with Elavl3 Elavl3 Elavl3 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	gene from Rattus norvegicus	1.3e-18
BLAST match view associations BLAST with ELAVL2 ELAVL2 ELAVL2 ELAV-like protein 2	protein from Homo sapiens	1.8e-18