Query 013926
Match_columns 434
No_of_seqs 167 out of 2330
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 08:46:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0144 RNA-binding protein CU 100.0 2.5E-51 5.4E-56 366.8 26.7 430 5-434 25-510 (510)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7E-48 1.5E-52 368.7 36.4 347 13-430 2-351 (352)
3 KOG0145 RNA-binding protein EL 100.0 2.8E-42 6E-47 289.3 26.8 319 11-429 38-359 (360)
4 KOG0117 Heterogeneous nuclear 100.0 2.3E-42 4.9E-47 311.0 23.9 252 9-431 78-334 (506)
5 TIGR01628 PABP-1234 polyadenyl 100.0 1.3E-40 2.8E-45 336.5 32.3 270 12-430 86-366 (562)
6 TIGR01628 PABP-1234 polyadenyl 100.0 5.2E-41 1.1E-45 339.4 29.1 255 15-430 1-263 (562)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.9E-39 4.2E-44 319.7 38.4 336 13-428 1-351 (481)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 6.4E-40 1.4E-44 319.7 29.2 247 11-429 55-308 (578)
9 KOG0127 Nucleolar protein fibr 100.0 4.3E-38 9.4E-43 289.6 28.1 339 14-430 5-380 (678)
10 TIGR01645 half-pint poly-U bin 100.0 8.4E-37 1.8E-41 298.1 35.4 166 12-183 105-284 (612)
11 TIGR01622 SF-CC1 splicing fact 100.0 1.2E-36 2.6E-41 301.0 33.1 166 10-182 85-265 (457)
12 KOG0148 Apoptosis-promoting RN 100.0 4.6E-37 1E-41 259.6 18.7 239 11-432 3-242 (321)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.2E-35 2.7E-40 292.7 29.3 279 15-428 97-480 (481)
14 TIGR01642 U2AF_lg U2 snRNP aux 100.0 6E-35 1.3E-39 292.9 30.8 275 10-427 171-501 (509)
15 KOG0123 Polyadenylate-binding 100.0 5E-32 1.1E-36 253.4 22.2 246 15-429 2-247 (369)
16 KOG0146 RNA-binding protein ET 100.0 2.2E-32 4.8E-37 230.6 16.7 343 85-434 2-371 (371)
17 KOG0123 Polyadenylate-binding 100.0 4.3E-31 9.3E-36 247.1 22.5 264 17-431 79-352 (369)
18 TIGR01659 sex-lethal sex-letha 100.0 2.3E-31 5E-36 247.9 20.5 170 100-431 106-278 (346)
19 TIGR01659 sex-lethal sex-letha 100.0 9.2E-30 2E-34 237.1 27.1 172 8-183 101-275 (346)
20 KOG0124 Polypyrimidine tract-b 100.0 2.4E-28 5.2E-33 214.9 26.0 164 14-183 113-290 (544)
21 TIGR01645 half-pint poly-U bin 100.0 1.6E-29 3.5E-34 247.1 18.6 179 101-430 107-286 (612)
22 KOG1190 Polypyrimidine tract-b 100.0 3.5E-27 7.6E-32 210.7 22.6 309 11-431 25-376 (492)
23 KOG0144 RNA-binding protein CU 100.0 1.3E-28 2.8E-33 221.3 13.6 173 100-431 33-209 (510)
24 KOG0110 RNA-binding protein (R 100.0 6.3E-28 1.4E-32 230.1 18.1 258 10-428 381-693 (725)
25 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.1E-27 4.5E-32 227.4 21.3 167 101-429 3-172 (352)
26 KOG0148 Apoptosis-promoting RN 100.0 6.5E-27 1.4E-31 198.3 18.2 160 14-184 62-239 (321)
27 KOG4212 RNA-binding protein hn 100.0 3.5E-25 7.6E-30 199.3 29.8 150 13-166 43-280 (608)
28 TIGR01622 SF-CC1 splicing fact 100.0 1.5E-26 3.2E-31 229.0 23.1 178 99-427 87-265 (457)
29 KOG0147 Transcriptional coacti 99.9 2.9E-26 6.3E-31 213.1 12.4 168 6-180 171-355 (549)
30 TIGR01648 hnRNP-R-Q heterogene 99.9 6.3E-25 1.4E-29 214.9 21.3 198 64-430 18-224 (578)
31 KOG0131 Splicing factor 3b, su 99.9 6E-26 1.3E-30 181.6 11.1 171 99-430 7-179 (203)
32 KOG0145 RNA-binding protein EL 99.9 1.9E-25 4.2E-30 188.1 13.1 170 99-430 39-211 (360)
33 KOG4211 Splicing factor hnRNP- 99.9 6.9E-23 1.5E-27 188.3 26.9 161 10-181 6-180 (510)
34 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.4E-23 2.9E-28 210.8 23.4 83 347-429 294-376 (509)
35 KOG1456 Heterogeneous nuclear 99.9 6E-22 1.3E-26 175.3 28.6 331 5-428 22-363 (494)
36 KOG0117 Heterogeneous nuclear 99.9 7.6E-22 1.7E-26 178.8 27.2 168 12-190 162-338 (506)
37 KOG0131 Splicing factor 3b, su 99.9 9.7E-24 2.1E-28 168.9 11.6 169 10-184 5-178 (203)
38 KOG0127 Nucleolar protein fibr 99.9 1.7E-23 3.7E-28 193.7 14.8 192 102-430 6-198 (678)
39 KOG0109 RNA-binding protein LA 99.9 9.2E-23 2E-27 174.9 10.4 152 102-432 3-154 (346)
40 KOG0110 RNA-binding protein (R 99.9 1.5E-21 3.3E-26 186.7 17.9 80 349-428 516-598 (725)
41 KOG0109 RNA-binding protein LA 99.9 5.8E-22 1.3E-26 170.0 9.5 146 15-181 3-148 (346)
42 KOG0124 Polypyrimidine tract-b 99.9 2.7E-21 5.9E-26 170.6 13.4 176 101-429 113-291 (544)
43 KOG1190 Polypyrimidine tract-b 99.8 1.8E-18 3.8E-23 155.3 23.6 276 13-428 149-491 (492)
44 KOG0146 RNA-binding protein ET 99.8 6.7E-20 1.4E-24 155.4 11.9 167 6-174 11-358 (371)
45 PLN03134 glycine-rich RNA-bind 99.8 6E-19 1.3E-23 144.1 14.1 84 347-430 33-116 (144)
46 KOG4205 RNA-binding protein mu 99.8 4.8E-19 1E-23 160.1 10.6 170 13-188 5-181 (311)
47 KOG4205 RNA-binding protein mu 99.8 6.3E-19 1.4E-23 159.3 9.3 173 100-430 5-178 (311)
48 KOG0147 Transcriptional coacti 99.8 6.9E-19 1.5E-23 164.3 9.4 178 101-427 179-357 (549)
49 KOG1365 RNA-binding protein Fu 99.8 8.3E-18 1.8E-22 149.7 15.6 277 11-424 57-358 (508)
50 KOG4307 RNA binding protein RB 99.8 2.7E-16 5.9E-21 149.9 26.4 160 12-179 309-510 (944)
51 KOG0105 Alternative splicing f 99.8 7.5E-18 1.6E-22 135.3 13.2 145 11-166 3-174 (241)
52 KOG0120 Splicing factor U2AF, 99.8 1.6E-17 3.5E-22 157.4 14.8 160 12-183 173-369 (500)
53 KOG4212 RNA-binding protein hn 99.7 1.9E-15 4E-20 137.0 19.8 241 101-426 44-292 (608)
54 PF00076 RRM_1: RNA recognitio 99.7 1.5E-16 3.3E-21 114.2 10.5 70 351-421 1-70 (70)
55 KOG1457 RNA binding protein (c 99.7 7.2E-16 1.6E-20 127.8 15.5 85 101-185 34-120 (284)
56 KOG4206 Spliceosomal protein s 99.7 1.6E-15 3.4E-20 127.3 16.0 206 102-426 10-220 (221)
57 KOG0122 Translation initiation 99.7 1.7E-16 3.7E-21 133.5 9.6 82 347-428 188-269 (270)
58 KOG4211 Splicing factor hnRNP- 99.7 1E-15 2.2E-20 141.4 14.9 79 347-426 102-180 (510)
59 KOG0105 Alternative splicing f 99.7 3.9E-15 8.5E-20 119.8 16.0 172 100-416 5-176 (241)
60 KOG1548 Transcription elongati 99.7 7.9E-15 1.7E-19 129.5 18.4 190 101-428 134-352 (382)
61 PF14259 RRM_6: RNA recognitio 99.7 1.1E-15 2.4E-20 109.6 10.4 70 351-421 1-70 (70)
62 KOG1365 RNA-binding protein Fu 99.7 3.2E-14 6.9E-19 127.1 21.6 163 13-180 160-359 (508)
63 KOG0125 Ataxin 2-binding prote 99.7 1.3E-15 2.7E-20 133.5 12.2 80 347-428 95-174 (376)
64 KOG0149 Predicted RNA-binding 99.6 6.2E-16 1.3E-20 129.8 7.7 78 349-427 13-90 (247)
65 KOG4207 Predicted splicing fac 99.6 8E-16 1.7E-20 126.0 6.0 81 348-428 13-93 (256)
66 PLN03134 glycine-rich RNA-bind 99.6 4.5E-15 9.8E-20 121.3 10.2 83 11-96 31-114 (144)
67 KOG1456 Heterogeneous nuclear 99.6 2E-12 4.4E-17 115.3 26.3 278 14-428 120-491 (494)
68 KOG0107 Alternative splicing f 99.6 4.4E-15 9.6E-20 118.7 8.5 80 346-430 8-87 (195)
69 KOG0121 Nuclear cap-binding pr 99.6 4E-15 8.6E-20 112.4 7.0 80 347-426 35-114 (153)
70 PLN03120 nucleic acid binding 99.6 1.4E-14 3E-19 126.3 11.1 77 348-428 4-80 (260)
71 KOG0114 Predicted RNA-binding 99.6 3.2E-14 6.8E-19 103.4 9.7 80 346-428 16-95 (124)
72 KOG0126 Predicted RNA-binding 99.6 7.2E-16 1.6E-20 123.7 1.0 81 347-427 34-114 (219)
73 PLN03213 repressor of silencin 99.5 2.7E-14 5.8E-19 131.6 10.1 79 346-428 8-88 (759)
74 smart00362 RRM_2 RNA recogniti 99.5 9.6E-14 2.1E-18 99.8 9.5 72 350-423 1-72 (72)
75 KOG0106 Alternative splicing f 99.5 3.5E-14 7.6E-19 120.6 7.9 165 102-423 2-166 (216)
76 KOG4206 Spliceosomal protein s 99.5 9.6E-13 2.1E-17 110.6 15.8 158 11-180 6-219 (221)
77 KOG0113 U1 small nuclear ribon 99.5 1.5E-13 3.2E-18 119.2 10.8 81 346-426 99-179 (335)
78 KOG0130 RNA-binding protein RB 99.5 7.1E-14 1.5E-18 106.6 7.8 84 347-430 71-154 (170)
79 smart00360 RRM RNA recognition 99.5 1.3E-13 2.9E-18 98.7 8.6 71 353-423 1-71 (71)
80 KOG0106 Alternative splicing f 99.5 4.5E-14 9.6E-19 120.0 6.4 143 15-177 2-165 (216)
81 KOG0108 mRNA cleavage and poly 99.5 8.9E-14 1.9E-18 131.7 8.3 82 349-430 19-100 (435)
82 PLN03121 nucleic acid binding 99.5 3.8E-13 8.2E-18 115.4 11.2 77 347-427 4-80 (243)
83 PF00076 RRM_1: RNA recognitio 99.5 1.9E-13 4.1E-18 97.9 8.0 65 17-83 1-66 (70)
84 KOG1457 RNA binding protein (c 99.5 1.1E-12 2.3E-17 109.2 13.0 153 11-166 31-272 (284)
85 cd00590 RRM RRM (RNA recogniti 99.4 1E-12 2.2E-17 94.9 10.3 74 350-424 1-74 (74)
86 PF13893 RRM_5: RNA recognitio 99.4 7.4E-13 1.6E-17 90.1 8.3 56 365-425 1-56 (56)
87 KOG0111 Cyclophilin-type pepti 99.4 9.4E-14 2E-18 115.0 4.2 85 347-431 9-93 (298)
88 smart00361 RRM_1 RNA recogniti 99.4 8.8E-13 1.9E-17 94.0 8.4 62 362-423 2-70 (70)
89 KOG0122 Translation initiation 99.4 7.8E-13 1.7E-17 111.7 8.7 84 10-96 185-269 (270)
90 PF14259 RRM_6: RNA recognitio 99.4 1.5E-12 3.3E-17 93.2 8.0 65 17-83 1-66 (70)
91 KOG0149 Predicted RNA-binding 99.4 1E-12 2.2E-17 110.7 7.6 78 11-90 9-87 (247)
92 COG0724 RNA-binding proteins ( 99.4 2.9E-12 6.2E-17 118.8 10.4 79 348-426 115-193 (306)
93 KOG0125 Ataxin 2-binding prote 99.4 1.9E-12 4.2E-17 113.8 7.7 80 100-183 95-174 (376)
94 KOG0107 Alternative splicing f 99.3 4.6E-12 1E-16 101.6 7.5 78 12-96 8-85 (195)
95 KOG0121 Nuclear cap-binding pr 99.3 3E-12 6.6E-17 97.0 6.0 86 6-94 28-114 (153)
96 PLN03120 nucleic acid binding 99.3 1.1E-11 2.4E-16 108.4 10.0 76 14-95 4-79 (260)
97 KOG1548 Transcription elongati 99.3 1.2E-10 2.6E-15 103.4 16.1 153 13-173 133-344 (382)
98 KOG0128 RNA-binding protein SA 99.3 1.8E-13 3.8E-18 134.5 -1.8 231 13-427 570-814 (881)
99 KOG4660 Protein Mei2, essentia 99.3 8.1E-10 1.7E-14 104.5 21.0 69 8-80 69-137 (549)
100 COG0724 RNA-binding proteins ( 99.3 3.9E-11 8.3E-16 111.2 12.2 78 101-181 115-193 (306)
101 KOG0114 Predicted RNA-binding 99.3 9.1E-11 2E-15 85.6 10.6 81 101-186 18-98 (124)
102 PLN03213 repressor of silencin 99.3 2.3E-11 4.9E-16 112.5 9.1 83 7-95 3-87 (759)
103 PLN03121 nucleic acid binding 99.2 6.4E-11 1.4E-15 101.8 9.3 75 12-92 3-77 (243)
104 KOG0415 Predicted peptidyl pro 99.2 2.5E-11 5.4E-16 107.8 6.9 85 344-428 235-319 (479)
105 KOG0129 Predicted RNA-binding 99.2 3.4E-10 7.5E-15 106.0 14.3 155 6-161 251-432 (520)
106 KOG0129 Predicted RNA-binding 99.2 3E-10 6.5E-15 106.4 13.8 63 347-409 369-432 (520)
107 KOG4208 Nucleolar RNA-binding 99.2 8E-11 1.7E-15 97.4 8.0 81 347-427 48-129 (214)
108 KOG0126 Predicted RNA-binding 99.2 2.5E-12 5.3E-17 103.6 -0.9 78 11-91 32-110 (219)
109 smart00362 RRM_2 RNA recogniti 99.1 2.6E-10 5.6E-15 81.6 8.6 67 103-171 1-67 (72)
110 KOG0130 RNA-binding protein RB 99.1 7.9E-11 1.7E-15 90.2 6.0 80 14-96 72-152 (170)
111 KOG0108 mRNA cleavage and poly 99.1 1.3E-10 2.7E-15 110.5 8.8 86 102-190 19-105 (435)
112 KOG0120 Splicing factor U2AF, 99.1 1.6E-10 3.6E-15 110.2 9.2 156 12-171 287-482 (500)
113 KOG0132 RNA polymerase II C-te 99.1 8.8E-09 1.9E-13 100.8 20.2 73 14-94 421-493 (894)
114 smart00360 RRM RNA recognition 99.1 3.6E-10 7.9E-15 80.6 8.1 64 19-83 1-65 (71)
115 KOG4661 Hsp27-ERE-TATA-binding 99.1 6.2E-10 1.3E-14 104.8 11.5 88 345-432 402-489 (940)
116 KOG0153 Predicted RNA-binding 99.1 3.8E-10 8.3E-15 100.4 9.3 79 344-428 224-303 (377)
117 cd00590 RRM RRM (RNA recogniti 99.1 9.3E-10 2E-14 79.2 9.5 73 103-178 1-73 (74)
118 KOG0113 U1 small nuclear ribon 99.1 4.8E-10 1E-14 97.7 8.9 83 8-93 95-178 (335)
119 KOG0132 RNA polymerase II C-te 99.1 2.4E-10 5.2E-15 111.5 7.7 79 346-430 419-497 (894)
120 KOG4207 Predicted splicing fac 99.0 3.1E-10 6.8E-15 93.5 5.8 80 12-94 11-91 (256)
121 KOG4454 RNA binding protein (R 99.0 8.8E-11 1.9E-15 97.6 2.0 139 10-164 5-147 (267)
122 KOG0533 RRM motif-containing p 99.0 1.2E-09 2.6E-14 95.3 8.6 81 347-428 82-162 (243)
123 KOG0111 Cyclophilin-type pepti 99.0 4.2E-10 9.1E-15 93.6 3.3 83 12-97 8-91 (298)
124 KOG0112 Large RNA-binding prot 99.0 7E-10 1.5E-14 110.1 5.4 166 8-183 366-531 (975)
125 PF13893 RRM_5: RNA recognitio 98.9 3.3E-09 7.2E-14 71.9 7.0 56 118-180 1-56 (56)
126 KOG4307 RNA binding protein RB 98.9 1.4E-07 3.1E-12 91.3 20.3 78 345-423 431-509 (944)
127 KOG0226 RNA-binding proteins [ 98.9 1.6E-08 3.4E-13 86.4 11.5 83 344-426 186-268 (290)
128 KOG0116 RasGAP SH3 binding pro 98.8 1.6E-08 3.5E-13 95.7 10.2 83 347-430 287-369 (419)
129 smart00361 RRM_1 RNA recogniti 98.8 1.3E-08 2.7E-13 72.5 7.1 55 28-83 2-64 (70)
130 PF04059 RRM_2: RNA recognitio 98.8 3.8E-08 8.3E-13 73.4 9.6 81 349-429 2-88 (97)
131 KOG0151 Predicted splicing reg 98.8 2.1E-08 4.5E-13 97.2 9.2 85 345-429 171-258 (877)
132 KOG0415 Predicted peptidyl pro 98.7 1.5E-08 3.2E-13 90.4 6.1 83 9-94 234-317 (479)
133 KOG4210 Nuclear localization s 98.7 1.1E-08 2.4E-13 93.0 4.2 81 349-430 185-266 (285)
134 KOG0112 Large RNA-binding prot 98.7 1.4E-08 3E-13 101.1 4.4 158 101-428 372-531 (975)
135 KOG4209 Splicing factor RNPS1, 98.7 5.6E-08 1.2E-12 85.4 6.8 86 346-432 99-184 (231)
136 KOG0226 RNA-binding proteins [ 98.6 7.1E-08 1.5E-12 82.5 6.2 152 17-172 99-261 (290)
137 KOG4454 RNA binding protein (R 98.6 1.8E-08 3.9E-13 84.1 2.4 81 346-428 7-87 (267)
138 KOG4208 Nucleolar RNA-binding 98.6 1.6E-07 3.5E-12 78.1 7.9 71 9-79 44-116 (214)
139 KOG0128 RNA-binding protein SA 98.6 3.5E-09 7.6E-14 104.8 -2.4 135 12-165 665-800 (881)
140 KOG0153 Predicted RNA-binding 98.6 1.4E-07 3E-12 84.4 7.6 75 101-182 228-302 (377)
141 KOG4661 Hsp27-ERE-TATA-binding 98.5 2.5E-07 5.5E-12 87.6 7.8 81 11-94 402-483 (940)
142 PF11608 Limkain-b1: Limkain b 98.5 4.3E-07 9.2E-12 64.2 6.4 69 349-427 3-76 (90)
143 KOG4210 Nuclear localization s 98.5 2.8E-07 6.1E-12 83.9 6.2 166 12-182 86-263 (285)
144 KOG2193 IGF-II mRNA-binding pr 98.5 3.1E-08 6.8E-13 90.4 -0.1 155 15-183 2-157 (584)
145 KOG4660 Protein Mei2, essentia 98.4 1.3E-07 2.8E-12 89.8 3.9 71 346-421 73-143 (549)
146 KOG4849 mRNA cleavage factor I 98.4 5E-05 1.1E-09 68.2 19.0 81 101-183 80-163 (498)
147 KOG0533 RRM motif-containing p 98.4 1.3E-06 2.8E-11 76.6 8.3 78 101-181 83-160 (243)
148 PF08777 RRM_3: RNA binding mo 98.4 5E-07 1.1E-11 69.2 4.7 71 348-424 1-76 (105)
149 KOG4676 Splicing factor, argin 98.3 2.7E-07 5.8E-12 83.6 3.2 64 348-416 151-214 (479)
150 KOG0116 RasGAP SH3 binding pro 98.3 8.4E-07 1.8E-11 84.2 6.7 75 7-83 281-356 (419)
151 KOG0151 Predicted splicing reg 98.1 4.1E-06 8.8E-11 81.8 6.1 80 11-93 171-254 (877)
152 KOG1995 Conserved Zn-finger pr 98.1 4.4E-06 9.6E-11 75.6 5.2 83 347-429 65-155 (351)
153 PF04059 RRM_2: RNA recognitio 98.0 5.4E-05 1.2E-09 56.6 9.4 65 15-79 2-69 (97)
154 KOG2193 IGF-II mRNA-binding pr 98.0 1.1E-06 2.4E-11 80.5 -0.4 150 102-424 2-153 (584)
155 KOG4209 Splicing factor RNPS1, 98.0 9.2E-06 2E-10 71.5 5.3 75 7-83 94-169 (231)
156 KOG2314 Translation initiation 97.8 0.0001 2.2E-09 70.4 8.9 77 347-424 57-140 (698)
157 PF14605 Nup35_RRM_2: Nup53/35 97.8 8.1E-05 1.8E-09 49.2 5.4 52 349-407 2-53 (53)
158 PF11608 Limkain-b1: Limkain b 97.7 0.00015 3.3E-09 51.5 7.0 70 102-183 3-77 (90)
159 KOG3152 TBP-binding protein, a 97.7 1.6E-05 3.5E-10 68.4 2.6 71 349-419 75-157 (278)
160 PF08777 RRM_3: RNA binding mo 97.7 7.7E-05 1.7E-09 57.2 6.0 59 15-78 2-60 (105)
161 COG5175 MOT2 Transcriptional r 97.6 0.00013 2.9E-09 65.2 6.5 80 349-428 115-203 (480)
162 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00021 4.7E-09 47.2 5.2 52 15-72 2-53 (53)
163 PF08952 DUF1866: Domain of un 97.5 0.00053 1.1E-08 54.9 8.1 74 344-426 23-105 (146)
164 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.0006 1.3E-08 51.4 7.7 71 348-426 6-90 (100)
165 KOG4676 Splicing factor, argin 97.5 5.9E-05 1.3E-09 68.8 2.6 143 15-163 8-210 (479)
166 KOG2202 U2 snRNP splicing fact 97.5 4.9E-05 1.1E-09 65.8 1.6 63 363-426 83-146 (260)
167 KOG1996 mRNA splicing factor [ 97.4 0.00045 9.7E-09 60.8 6.6 80 347-426 280-365 (378)
168 KOG1855 Predicted RNA-binding 97.3 0.00025 5.4E-09 65.7 3.9 65 347-411 230-307 (484)
169 KOG0115 RNA-binding protein p5 97.1 0.0015 3.3E-08 56.6 6.9 64 349-413 32-95 (275)
170 COG5175 MOT2 Transcriptional r 97.1 0.0015 3.3E-08 58.6 6.9 79 102-183 115-203 (480)
171 KOG4849 mRNA cleavage factor I 97.1 0.00043 9.3E-09 62.3 3.4 72 348-419 80-153 (498)
172 KOG2314 Translation initiation 97.1 0.0013 2.7E-08 63.3 6.6 74 99-172 56-135 (698)
173 PF08675 RNA_bind: RNA binding 96.9 0.004 8.8E-08 44.4 6.3 59 10-76 5-63 (87)
174 KOG0115 RNA-binding protein p5 96.9 0.0026 5.6E-08 55.3 6.1 89 68-165 7-95 (275)
175 KOG1855 Predicted RNA-binding 96.9 0.0013 2.8E-08 61.1 4.5 72 8-79 225-310 (484)
176 PF10309 DUF2414: Protein of u 96.9 0.0071 1.5E-07 40.9 6.9 54 14-75 5-62 (62)
177 KOG1995 Conserved Zn-finger pr 96.8 0.0018 3.9E-08 59.1 5.2 82 10-94 62-152 (351)
178 PF15023 DUF4523: Protein of u 96.8 0.006 1.3E-07 48.1 7.1 74 345-426 83-160 (166)
179 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.0043 9.3E-08 46.8 6.0 79 12-94 4-90 (100)
180 KOG3152 TBP-binding protein, a 96.7 0.0016 3.5E-08 56.5 3.5 70 13-83 73-155 (278)
181 KOG4574 RNA-binding protein (c 96.6 0.0074 1.6E-07 61.0 8.0 75 349-429 299-375 (1007)
182 PF10309 DUF2414: Protein of u 96.6 0.013 2.8E-07 39.7 6.5 54 102-162 6-62 (62)
183 KOG2202 U2 snRNP splicing fact 96.5 0.0019 4.1E-08 56.2 2.8 63 116-181 83-146 (260)
184 PF08675 RNA_bind: RNA binding 96.5 0.022 4.7E-07 40.7 7.4 56 101-164 9-64 (87)
185 KOG2416 Acinus (induces apopto 96.0 0.011 2.4E-07 57.4 5.4 82 99-185 442-524 (718)
186 KOG2416 Acinus (induces apopto 95.8 0.0084 1.8E-07 58.2 3.6 65 10-79 440-505 (718)
187 PF04847 Calcipressin: Calcipr 95.8 0.033 7.2E-07 47.3 6.8 63 361-429 8-72 (184)
188 PF03467 Smg4_UPF3: Smg-4/UPF3 95.5 0.017 3.7E-07 48.9 4.1 71 11-81 4-81 (176)
189 PF11767 SET_assoc: Histone ly 95.4 0.084 1.8E-06 36.4 6.4 55 359-422 11-65 (66)
190 KOG2591 c-Mpl binding protein, 95.3 0.44 9.6E-06 46.4 13.1 68 347-421 174-245 (684)
191 PF07576 BRAP2: BRCA1-associat 95.1 0.23 5.1E-06 38.2 8.9 65 13-79 11-78 (110)
192 KOG2068 MOT2 transcription fac 95.0 0.0077 1.7E-07 54.7 0.6 81 349-429 78-164 (327)
193 KOG1996 mRNA splicing factor [ 95.0 0.069 1.5E-06 47.5 6.2 56 27-83 299-356 (378)
194 KOG2253 U1 snRNP complex, subu 94.9 0.04 8.6E-07 54.6 5.1 69 347-424 39-107 (668)
195 KOG2591 c-Mpl binding protein, 94.8 0.12 2.7E-06 50.1 7.8 60 11-76 172-233 (684)
196 PF03467 Smg4_UPF3: Smg-4/UPF3 94.5 0.098 2.1E-06 44.3 5.9 83 347-429 6-99 (176)
197 PF07576 BRAP2: BRCA1-associat 94.4 0.55 1.2E-05 36.2 9.2 67 349-417 14-81 (110)
198 PF07292 NID: Nmi/IFP 35 domai 94.1 0.043 9.3E-07 40.2 2.4 66 58-123 1-74 (88)
199 PF03880 DbpA: DbpA RNA bindin 94.0 0.3 6.5E-06 34.8 6.7 67 350-425 2-74 (74)
200 PF15023 DUF4523: Protein of u 93.9 0.32 7E-06 38.6 7.0 64 8-77 80-147 (166)
201 KOG2135 Proteins containing th 93.7 0.036 7.8E-07 52.6 1.9 74 347-427 371-445 (526)
202 KOG4285 Mitotic phosphoprotein 93.6 0.13 2.8E-06 46.1 5.0 64 349-420 198-261 (350)
203 PF08952 DUF1866: Domain of un 93.6 0.13 2.9E-06 41.4 4.6 65 11-84 24-97 (146)
204 KOG4285 Mitotic phosphoprotein 92.6 0.41 8.8E-06 43.0 6.6 62 13-83 196-258 (350)
205 KOG4574 RNA-binding protein (c 91.9 0.86 1.9E-05 46.8 8.6 72 105-182 302-373 (1007)
206 KOG2068 MOT2 transcription fac 91.0 0.1 2.2E-06 47.6 1.3 78 102-182 78-162 (327)
207 KOG0804 Cytoplasmic Zn-finger 91.0 0.86 1.9E-05 43.4 7.2 65 13-79 73-139 (493)
208 KOG0804 Cytoplasmic Zn-finger 90.6 0.78 1.7E-05 43.7 6.6 66 101-167 74-140 (493)
209 KOG2318 Uncharacterized conser 84.9 3.7 8E-05 40.6 7.4 79 345-424 171-302 (650)
210 PF07292 NID: Nmi/IFP 35 domai 83.8 0.39 8.6E-06 35.2 0.4 25 347-371 51-75 (88)
211 KOG4019 Calcineurin-mediated s 83.8 0.9 1.9E-05 37.8 2.4 76 347-428 9-90 (193)
212 PF04847 Calcipressin: Calcipr 82.0 2.7 5.9E-05 35.8 4.8 59 114-180 8-68 (184)
213 KOG4213 RNA-binding protein La 81.3 1.2 2.6E-05 36.9 2.3 68 4-75 101-170 (205)
214 PF11767 SET_assoc: Histone ly 80.4 8 0.00017 26.7 5.8 48 25-80 11-58 (66)
215 PF03468 XS: XS domain; Inter 78.8 3.2 7E-05 32.4 3.9 53 350-405 10-71 (116)
216 KOG2135 Proteins containing th 78.6 1.1 2.5E-05 42.8 1.6 73 15-96 373-446 (526)
217 PF03880 DbpA: DbpA RNA bindin 76.6 17 0.00036 25.7 6.8 58 111-179 11-73 (74)
218 KOG2318 Uncharacterized conser 74.6 13 0.00028 37.0 7.4 82 99-181 172-306 (650)
219 PF07530 PRE_C2HC: Associated 73.5 6.5 0.00014 27.3 3.9 64 363-429 2-66 (68)
220 KOG1924 RhoA GTPase effector D 72.2 57 0.0012 34.1 11.4 7 349-355 642-648 (1102)
221 PF10567 Nab6_mRNP_bdg: RNA-re 69.1 12 0.00026 33.9 5.5 61 99-159 13-81 (309)
222 PF10567 Nab6_mRNP_bdg: RNA-re 69.1 8.9 0.00019 34.7 4.7 148 13-163 14-212 (309)
223 TIGR03636 L23_arch archaeal ri 68.1 23 0.00051 25.3 5.8 57 351-410 16-74 (77)
224 KOG4483 Uncharacterized conser 65.6 11 0.00024 35.6 4.7 57 13-75 390-447 (528)
225 PF15513 DUF4651: Domain of un 64.1 16 0.00034 24.8 4.0 24 29-53 9-32 (62)
226 PRK14548 50S ribosomal protein 63.6 30 0.00066 25.2 5.8 57 351-410 23-81 (84)
227 KOG4410 5-formyltetrahydrofola 62.8 1.2E+02 0.0025 27.6 10.2 52 344-400 326-377 (396)
228 PF14111 DUF4283: Domain of un 62.7 16 0.00036 29.8 5.0 106 24-136 27-140 (153)
229 KOG4410 5-formyltetrahydrofola 60.3 16 0.00034 32.8 4.5 46 102-152 331-377 (396)
230 KOG2295 C2H2 Zn-finger protein 60.0 1.3 2.7E-05 43.4 -2.4 72 347-418 230-301 (648)
231 smart00596 PRE_C2HC PRE_C2HC d 59.0 18 0.0004 25.1 3.7 64 363-429 2-66 (69)
232 KOG2253 U1 snRNP complex, subu 56.8 7.4 0.00016 39.2 2.1 60 11-78 37-96 (668)
233 KOG4483 Uncharacterized conser 56.1 37 0.0008 32.2 6.3 60 344-409 387-446 (528)
234 KOG4365 Uncharacterized conser 55.4 2.1 4.5E-05 40.7 -1.8 79 349-428 4-82 (572)
235 PF14893 PNMA: PNMA 55.1 12 0.00027 35.1 3.2 54 12-65 16-72 (331)
236 KOG4213 RNA-binding protein La 52.1 19 0.00041 30.1 3.4 59 101-163 111-171 (205)
237 PRK14548 50S ribosomal protein 47.5 62 0.0013 23.6 5.1 55 106-162 25-81 (84)
238 KOG4008 rRNA processing protei 46.2 19 0.00041 31.6 2.6 36 8-43 34-69 (261)
239 cd04908 ACT_Bt0572_1 N-termina 45.7 93 0.002 21.0 7.2 50 361-415 14-64 (66)
240 KOG1295 Nonsense-mediated deca 45.4 28 0.0006 33.0 3.8 72 12-83 5-80 (376)
241 PRK11901 hypothetical protein; 45.1 1.4E+02 0.0031 27.8 8.2 62 345-411 242-305 (327)
242 PF15513 DUF4651: Domain of un 44.8 51 0.0011 22.4 4.0 18 363-380 9-26 (62)
243 KOG1295 Nonsense-mediated deca 44.7 26 0.00057 33.1 3.6 71 102-172 8-82 (376)
244 KOG2891 Surface glycoprotein [ 41.7 30 0.00065 31.0 3.3 36 347-382 148-195 (445)
245 PF03468 XS: XS domain; Inter 41.1 23 0.00051 27.6 2.3 36 114-151 30-65 (116)
246 PRK11901 hypothetical protein; 40.9 54 0.0012 30.5 4.9 61 12-76 243-305 (327)
247 PRK10629 EnvZ/OmpR regulon mod 38.6 1.9E+02 0.0041 23.0 7.1 75 347-429 34-113 (127)
248 PF11823 DUF3343: Protein of u 30.6 64 0.0014 22.6 3.0 27 392-418 3-29 (73)
249 PF11411 DNA_ligase_IV: DNA li 29.3 42 0.00091 20.0 1.5 15 359-373 20-34 (36)
250 KOG2295 C2H2 Zn-finger protein 28.6 9.7 0.00021 37.6 -1.9 66 101-166 231-297 (648)
251 COG3254 Uncharacterized conser 27.7 2E+02 0.0044 21.8 5.2 42 29-73 27-69 (105)
252 KOG4019 Calcineurin-mediated s 27.5 71 0.0015 26.9 3.1 75 102-183 11-90 (193)
253 COG5584 Predicted small secret 27.0 1.1E+02 0.0024 22.8 3.6 33 20-52 28-60 (103)
254 PTZ00191 60S ribosomal protein 26.3 2.4E+02 0.0051 23.0 5.8 54 351-407 84-139 (145)
255 PF14026 DUF4242: Protein of u 26.3 2.4E+02 0.0053 20.0 5.7 59 17-75 3-67 (77)
256 PF09702 Cas_Csa5: CRISPR-asso 26.1 78 0.0017 23.9 2.8 25 10-37 60-84 (105)
257 KOG4008 rRNA processing protei 24.6 64 0.0014 28.4 2.4 35 346-380 38-72 (261)
258 TIGR01033 DNA-binding regulato 23.8 2.6E+02 0.0057 25.0 6.3 56 345-407 91-156 (238)
259 COG5193 LHP1 La protein, small 23.5 37 0.0008 32.3 0.9 61 348-408 174-244 (438)
260 PRK10905 cell division protein 23.5 2.8E+02 0.006 25.9 6.4 61 12-76 245-307 (328)
261 KOG3424 40S ribosomal protein 23.2 1.9E+02 0.0042 22.4 4.5 45 359-404 34-83 (132)
262 cd04904 ACT_AAAH ACT domain of 22.7 2.7E+02 0.0059 19.3 7.6 52 113-164 12-65 (74)
263 PF02714 DUF221: Domain of unk 21.8 1.4E+02 0.003 28.0 4.5 56 58-123 1-56 (325)
264 PRK01178 rps24e 30S ribosomal 21.7 3.2E+02 0.0068 20.7 5.4 46 359-405 30-80 (99)
265 PF08156 NOP5NT: NOP5NT (NUC12 21.0 37 0.00081 23.5 0.3 38 29-75 27-64 (67)
266 PF09341 Pcc1: Transcription f 20.2 2.4E+02 0.0051 19.8 4.4 21 391-411 3-23 (76)
No 1
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.5e-51 Score=366.84 Aligned_cols=430 Identities=43% Similarity=0.681 Sum_probs=302.5
Q ss_pred cccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
.+++.++.+.-++||+-||..++|+||+++|++||.|.+|.+++||.++.++ ||||+|.+.++|.+|+..||+...++|
T Consensus 25 ~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG 104 (510)
T KOG0144|consen 25 DHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG 104 (510)
T ss_pred CCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCC
Confidence 4556677888999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCceeeeccCcccccC--CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHH
Q 013926 84 ASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 161 (434)
Q Consensus 84 ~~~~i~~~~~~~~~~~~--~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~ 161 (434)
++.+|.|++++.+.++. +++|||+-|++.+++.||+++|++||.|+++.|.++.++.++|+|||+|.+.|.|..||+.
T Consensus 105 ~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika 184 (510)
T KOG0144|consen 105 MHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKA 184 (510)
T ss_pred CCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHh
Confidence 99999999999998886 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccCCCCcceEEEeeccChHHHHHHHHHHHh-hhccCCC-CCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccC
Q 013926 162 INGKHKMEGSSVPLVVKWADTEKERQARRAQKAQ-SQANNLP-NADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQY 239 (434)
Q Consensus 162 l~~~~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 239 (434)
||+..-+.|+..+|+|+||++++++.-++.+... ...-.+. .....+....+..++++.++...+.+....+.-...+
T Consensus 185 ~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~ 264 (510)
T KOG0144|consen 185 LNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLP 264 (510)
T ss_pred hccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCccccccc
Confidence 9999999999999999999999888776653222 1111121 2234455566677777777766665544433222222
Q ss_pred CCCCCC----CCCCCcCCCCCCC--CCCCCcC--CCCCCCCC--CCCCCCCCCCCCCCCC---------CCCCCCC----
Q 013926 240 RLPPMQ----NQPGFHGIIPPVN--QGNAMRG--ASPDLSSN--MGPRNYAMPPSGFVGS---------GYPAVPG---- 296 (434)
Q Consensus 240 ~~~~~~----~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~--~~~~~~~~~p~~~~~~---------~~~~~~~---- 296 (434)
.+.+.. .+.+..++...+. ...+..+ +......+ ..+....+.+...... ....+++
T Consensus 265 ~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~ 344 (510)
T KOG0144|consen 265 PLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPAN 344 (510)
T ss_pred CCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchh
Confidence 222222 1111111111110 0011111 00000000 0000000000000000 0011110
Q ss_pred -----------CCCCCCCCCCC---CCCCCCCC-----CCCCCCCCCCCCCCCC---------CCCCCCCCCCCccCCCC
Q 013926 297 -----------LQYPMPYPGGM---LGHRPLNN-----SPGSVSPAVANSNPST---------SSSGGTGSGGQIEGPPG 348 (434)
Q Consensus 297 -----------~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 348 (434)
...++....+. +++.+... ....+.......+.+. .....-....+.+++.+
T Consensus 345 ~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeG 424 (510)
T KOG0144|consen 345 YNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEG 424 (510)
T ss_pred cccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCc
Confidence 01111000000 00001000 0000000000000000 11122233455678889
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 428 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~~ 428 (434)
.++||.+||.+.-+.||...|..||.|.+.++..|+.+|.++.|+||.|++..+|..|+..|||..+++++++|.+.+++
T Consensus 425 anlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 425 ANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred cceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 013926 429 KQNKPY 434 (434)
Q Consensus 429 ~~~~~~ 434 (434)
..+.||
T Consensus 505 ~np~~~ 510 (510)
T KOG0144|consen 505 NNPYPR 510 (510)
T ss_pred CCCCCC
Confidence 988886
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=7e-48 Score=368.75 Aligned_cols=347 Identities=23% Similarity=0.385 Sum_probs=235.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeee
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 91 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~ 91 (434)
+..+|||+|||++++|++|+++|+.||+|.+|++++++.++.++ ||||+|.+.++|++||+.||+.. +.| +.+.+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~-l~g--~~i~v~ 78 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLR-LQN--KTIKVS 78 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEE-ECC--eeEEEE
Confidence 47899999999999999999999999999999999999988888 99999999999999999999876 666 678887
Q ss_pred ccCccccc-CCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 013926 92 YADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 169 (434)
Q Consensus 92 ~~~~~~~~-~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~ 169 (434)
++.+.... ...+|||+|||..+++++|+++|+.||.|..+.++.+. .+.++|+|||+|.+.++|++|++.|++.. +.
T Consensus 79 ~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~-~~ 157 (352)
T TIGR01661 79 YARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTT-PS 157 (352)
T ss_pred eecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCc-cC
Confidence 77654432 35789999999999999999999999999999888776 67889999999999999999999999976 77
Q ss_pred CCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCC
Q 013926 170 GSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 249 (434)
Q Consensus 170 g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 249 (434)
|+..+|.+.++.......................... +.+... ...+ ..+.......
T Consensus 158 g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~----------~~~~----~~~~~~~~~~ 214 (352)
T TIGR01661 158 GCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRV---------PLSTIL----------TAAG----IGPMHHAAAR 214 (352)
T ss_pred CCceeEEEEECCCCCcCCchhcCchhhcccCcccCCC---------Cccccc----------cccC----CCCccCcccc
Confidence 7777899999876542211111000000000000000 000000 0000 0000000000
Q ss_pred CcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 250 FHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 329 (434)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (434)
...+.. ............ ...++...... ..+. . ........
T Consensus 215 ~~~~~~-----~~~~~~~~~~~~------~~~~~~~~~~~---~~~~--~-----------------~~~~~~~~----- 256 (352)
T TIGR01661 215 FRPSAG-----DFTAVLAHQQQQ------HAVAQQHAAQR---ASPP--A-----------------TDGQTAGL----- 256 (352)
T ss_pred cccCcc-----hhhhhhhhhhhh------ccccccccccc---CCCc--c-----------------cccccccc-----
Confidence 000000 000000000000 00000000000 0000 0 00000000
Q ss_pred CCCCCCCCCCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013926 330 STSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409 (434)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 409 (434)
............+.+|||+|||.++++++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|.+|+..
T Consensus 257 ------~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~ 330 (352)
T TIGR01661 257 ------AAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILS 330 (352)
T ss_pred ------ccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 00000001122456899999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeCCeEEEEEEecCCcC
Q 013926 410 MNGCQLGGKKLKVQLKRDNKQ 430 (434)
Q Consensus 410 l~g~~l~g~~i~v~~a~~~~~ 430 (434)
|||..|+||+|+|.|+.++..
T Consensus 331 lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 331 LNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred hCCCEECCeEEEEEEccCCCC
Confidence 999999999999999988764
No 3
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.8e-42 Score=289.26 Aligned_cols=319 Identities=25% Similarity=0.433 Sum_probs=239.4
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCcee
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 89 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~ 89 (434)
++....|-|.-||..+|+++|+.+|...|.|++|++++|+.++.+- |+||.|.+++||++||..+||..+ -.+.|+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL---Q~KTIK 114 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL---QNKTIK 114 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee---ccceEE
Confidence 4566789999999999999999999999999999999999999999 999999999999999999999763 338899
Q ss_pred eeccCccccc-CCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcc
Q 013926 90 VKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 167 (434)
Q Consensus 90 ~~~~~~~~~~-~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~ 167 (434)
|+++.+.... .+..|||++||+.+|..||.++|++||.|..-+|..|. +|.++|.+||+|+..++|++||..|||..
T Consensus 115 VSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~- 193 (360)
T KOG0145|consen 115 VSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK- 193 (360)
T ss_pred EEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC-
Confidence 9999866544 36789999999999999999999999988776776665 88999999999999999999999999976
Q ss_pred CCCCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCC
Q 013926 168 MEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQ 247 (434)
Q Consensus 168 ~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 247 (434)
-.|+.-+|.|++|..............-.+. +. ..++. .++-..++
T Consensus 194 P~g~tepItVKFannPsq~t~~a~ls~ly~s---p~----------------------------rr~~G---p~hh~~~r 239 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNPSQKTNQALLSQLYQS---PA----------------------------RRYGG---PMHHQAQR 239 (360)
T ss_pred CCCCCCCeEEEecCCcccccchhhhHHhhcC---cc----------------------------ccCCC---cccchhhh
Confidence 7888889999999776433222211111100 00 00000 01111111
Q ss_pred CCCcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 248 PGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANS 327 (434)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (434)
..+.+++++.....-.+ +.....+.++ .
T Consensus 240 ~r~~~~~~~~~~~~rfs-----------------------P~~~d~m~~l-----------------------------~ 267 (360)
T KOG0145|consen 240 FRLDNLLNPHAAQARFS-----------------------PMTIDGMSGL-----------------------------A 267 (360)
T ss_pred hccccccchhhhhccCC-----------------------Ccccccccee-----------------------------e
Confidence 11111110000000000 0000000000 0
Q ss_pred CCCCCCCCCCCCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHH
Q 013926 328 NPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407 (434)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 407 (434)
.... +.....+.+|||-||..++++.-|+++|..||.|..|+|++|..+++.+|||||.+.+-++|..|+
T Consensus 268 ~~~l----------p~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi 337 (360)
T KOG0145|consen 268 GVNL----------PGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 337 (360)
T ss_pred eecc----------CCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHH
Confidence 0000 000113578999999999999999999999999999999999989999999999999999999999
Q ss_pred HHhCCceeCCeEEEEEEecCCc
Q 013926 408 AMMNGCQLGGKKLKVQLKRDNK 429 (434)
Q Consensus 408 ~~l~g~~l~g~~i~v~~a~~~~ 429 (434)
..|||..+++|.|.|+|.-+|.
T Consensus 338 ~sLNGy~lg~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 338 ASLNGYRLGDRVLQVSFKTNKA 359 (360)
T ss_pred HHhcCccccceEEEEEEecCCC
Confidence 9999999999999999977765
No 4
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.3e-42 Score=310.97 Aligned_cols=252 Identities=25% Similarity=0.452 Sum_probs=219.0
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
.....++.|||+.||.|+.|++|..+|.+.|+|-+++++.|+.++.++ ||||.|++.++|++||+.||+..+..|+...
T Consensus 78 ~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 78 PPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 344678999999999999999999999999999999999999999999 9999999999999999999999988886666
Q ss_pred eeeeccCcccccCCCeEEEeCCCCCCcHHHHHHhhhccCC-eeEEEEccCC--CCCcceEEEEEeCCHHHHHHHHHHh-c
Q 013926 88 LQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT-IKDLQILRGS--QQTSKGCAFLKYETKEQALAALEAI-N 163 (434)
Q Consensus 88 i~~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~-i~~i~~~~~~--~~~~~g~a~V~f~~~~~a~~a~~~l-~ 163 (434)
++++.++ ++|||+|||+.+++++|++.+++.++ |..|.+.... .++.+|||||+|.+...|.-|..+| +
T Consensus 158 vc~Svan-------~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 158 VCVSVAN-------CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred EEEeeec-------ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 6666655 78999999999999999999999985 7777776665 4568899999999999998888876 5
Q ss_pred CCccCCCCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCC
Q 013926 164 GKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPP 243 (434)
Q Consensus 164 ~~~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 243 (434)
++.-++|+ .+.|.||.+..+......+
T Consensus 231 g~~klwgn--~~tVdWAep~~e~ded~ms--------------------------------------------------- 257 (506)
T KOG0117|consen 231 GKIKLWGN--AITVDWAEPEEEPDEDTMS--------------------------------------------------- 257 (506)
T ss_pred CceeecCC--cceeeccCcccCCChhhhh---------------------------------------------------
Confidence 55446666 5899999877432222100
Q ss_pred CCCCCCCcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 244 MQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPA 323 (434)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (434)
T Consensus 258 -------------------------------------------------------------------------------- 257 (506)
T KOG0117|consen 258 -------------------------------------------------------------------------------- 257 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHH
Q 013926 324 VANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASA 403 (434)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A 403 (434)
.-..|||+||+.++|+|.|+++|+.||.|.+|+.++| ||||.|.++++|
T Consensus 258 -----------------------~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~da 306 (506)
T KOG0117|consen 258 -----------------------KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDA 306 (506)
T ss_pred -----------------------heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHH
Confidence 2357999999999999999999999999999998866 999999999999
Q ss_pred HHHHHHhCCceeCCeEEEEEEecCCcCC
Q 013926 404 QNAIAMMNGCQLGGKKLKVQLKRDNKQN 431 (434)
Q Consensus 404 ~~A~~~l~g~~l~g~~i~v~~a~~~~~~ 431 (434)
.+|++.+||+.|+|..|.|.+||...+.
T Consensus 307 vkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 307 VKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred HHHHHHhcCceecCceEEEEecCChhhh
Confidence 9999999999999999999999987654
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.3e-40 Score=336.54 Aligned_cols=270 Identities=28% Similarity=0.448 Sum_probs=223.2
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
....+|||+|||.++++++|+++|+.||.|.+|++..+.. ++++ ||||+|.+.++|++|++.+|+.. +.+ +.+.+
T Consensus 86 ~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~-g~skg~afV~F~~~e~A~~Ai~~lng~~-~~~--~~i~v 161 (562)
T TIGR01628 86 SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDEN-GKSRGYGFVHFEKEESAKAAIQKVNGML-LND--KEVYV 161 (562)
T ss_pred cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCC-CCcccEEEEEECCHHHHHHHHHHhcccE-ecC--ceEEE
Confidence 3456899999999999999999999999999999998864 5556 99999999999999999998875 555 45554
Q ss_pred eccCcc------cccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 013926 91 KYADGE------LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 164 (434)
Q Consensus 91 ~~~~~~------~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~ 164 (434)
...... .....++|||+||+.++|+++|+++|+.||.|..+.+..+.++.++|+|||.|.+.++|.+|++.+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g 241 (562)
T TIGR01628 162 GRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNG 241 (562)
T ss_pred eccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 333221 12235679999999999999999999999999999999998899999999999999999999999999
Q ss_pred CccCC----CCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCC
Q 013926 165 KHKME----GSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYR 240 (434)
Q Consensus 165 ~~~~~----g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 240 (434)
.. ++ |. .+.+.++..+.++..............
T Consensus 242 ~~-i~~~~~g~--~l~v~~a~~k~er~~~~~~~~~~~~~~---------------------------------------- 278 (562)
T TIGR01628 242 KK-IGLAKEGK--KLYVGRAQKRAEREAELRRKFEELQQE---------------------------------------- 278 (562)
T ss_pred cE-ecccccce--eeEeecccChhhhHHHHHhhHHhhhhh----------------------------------------
Confidence 87 55 54 578888877655433221111100000
Q ss_pred CCCCCCCCCCcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 241 LPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSV 320 (434)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (434)
T Consensus 279 -------------------------------------------------------------------------------- 278 (562)
T TIGR01628 279 -------------------------------------------------------------------------------- 278 (562)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCH
Q 013926 321 SPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESP 400 (434)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~ 400 (434)
.......++|||+||+.++|+++|+++|+.||.|.+++|+.+ .+|.++|||||.|.+.
T Consensus 279 ---------------------~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~ 336 (562)
T TIGR01628 279 ---------------------RKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNP 336 (562)
T ss_pred ---------------------hhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCH
Confidence 000113468999999999999999999999999999999999 6899999999999999
Q ss_pred HHHHHHHHHhCCceeCCeEEEEEEecCCcC
Q 013926 401 ASAQNAIAMMNGCQLGGKKLKVQLKRDNKQ 430 (434)
Q Consensus 401 ~~A~~A~~~l~g~~l~g~~i~v~~a~~~~~ 430 (434)
++|.+|+..|||..|+|++|.|.+|+.+..
T Consensus 337 ~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 337 EEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred HHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 999999999999999999999999998753
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=5.2e-41 Score=339.45 Aligned_cols=255 Identities=28% Similarity=0.466 Sum_probs=219.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeecc
Q 013926 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 93 (434)
Q Consensus 15 ~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~ 93 (434)
.+|||+|||+++||++|+++|+.||+|.+|++.+++.+++++ ||||+|.+.++|++|++.+|+.. +.| +.|++.|+
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~-i~g--k~i~i~~s 77 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKR-LGG--KPIRIMWS 77 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--eeEEeecc
Confidence 379999999999999999999999999999999999988888 99999999999999999998765 556 67777776
Q ss_pred Ccccc---cCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 013926 94 DGELE---RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 170 (434)
Q Consensus 94 ~~~~~---~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g 170 (434)
..... ....+|||+|||.++++++|+++|+.||.|..|.+..+.+|+++|||||+|.+.++|.+|++.+++.. +++
T Consensus 78 ~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~-~~~ 156 (562)
T TIGR01628 78 QRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGML-LND 156 (562)
T ss_pred cccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccE-ecC
Confidence 43221 22468999999999999999999999999999999999889999999999999999999999999976 666
Q ss_pred CcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCC
Q 013926 171 SSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGF 250 (434)
Q Consensus 171 ~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 250 (434)
+ .+.+.....+.++..
T Consensus 157 ~--~i~v~~~~~~~~~~~-------------------------------------------------------------- 172 (562)
T TIGR01628 157 K--EVYVGRFIKKHEREA-------------------------------------------------------------- 172 (562)
T ss_pred c--eEEEecccccccccc--------------------------------------------------------------
Confidence 6 456654332211000
Q ss_pred cCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 251 HGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPS 330 (434)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (434)
T Consensus 173 -------------------------------------------------------------------------------- 172 (562)
T TIGR01628 173 -------------------------------------------------------------------------------- 172 (562)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 013926 331 TSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410 (434)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 410 (434)
......++|||+|||.++|+++|+++|+.||.|.++.++.+. +|+++|||||.|.+.++|.+|++.|
T Consensus 173 ------------~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l 239 (562)
T TIGR01628 173 ------------APLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEM 239 (562)
T ss_pred ------------ccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHh
Confidence 001133679999999999999999999999999999999885 7999999999999999999999999
Q ss_pred CCceeC----CeEEEEEEecCCcC
Q 013926 411 NGCQLG----GKKLKVQLKRDNKQ 430 (434)
Q Consensus 411 ~g~~l~----g~~i~v~~a~~~~~ 430 (434)
||..+. |+.|.|.+++.+.+
T Consensus 240 ~g~~i~~~~~g~~l~v~~a~~k~e 263 (562)
T TIGR01628 240 NGKKIGLAKEGKKLYVGRAQKRAE 263 (562)
T ss_pred CCcEecccccceeeEeecccChhh
Confidence 999999 99999999877654
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.9e-39 Score=319.69 Aligned_cols=336 Identities=21% Similarity=0.277 Sum_probs=211.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhcc-CccCCCCCCceeee
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHN-KKTLPGASSPLQVK 91 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~-~~~~~g~~~~i~~~ 91 (434)
+++.|||+|||++++|++|+++|+.||+|.+|.+++++. ||||+|.+.++|++|++.++. ...+.| +++.+.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~-----~afVef~~~e~A~~Ai~~~~~~~~~l~g--~~l~v~ 73 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKR-----QALVEFEDEESAKACVNFATSVPIYIRG--QPAFFN 73 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCC-----EEEEEeCchHHHHHHHHHhhcCCceEcC--eEEEEE
Confidence 578999999999999999999999999999999987653 999999999999999997642 233666 777777
Q ss_pred ccCccc----c---------cCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHH
Q 013926 92 YADGEL----E---------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAA 158 (434)
Q Consensus 92 ~~~~~~----~---------~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a 158 (434)
++.... . ....+|+|+||++.+|+++|+++|+.||.|..|.++++.. +++|||+|.+.++|.+|
T Consensus 74 ~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~---~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 74 YSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN---VFQALVEFESVNSAQHA 150 (481)
T ss_pred ecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC---ceEEEEEECCHHHHHHH
Confidence 764221 0 0123789999999999999999999999999999877532 46899999999999999
Q ss_pred HHHhcCCccCCCCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCccc
Q 013926 159 LEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQ 238 (434)
Q Consensus 159 ~~~l~~~~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 238 (434)
++.|||..+.+++ +.|.|.|+.......... +...++..++...+....+ ...........
T Consensus 151 ~~~Lng~~i~~~~-~~l~v~~sk~~~l~v~~~---------~~~s~dyt~~~l~~~~~~~---~~~~~~~~~~~------ 211 (481)
T TIGR01649 151 KAALNGADIYNGC-CTLKIEYAKPTRLNVKYN---------DDDSRDYTNPDLPGRRDPG---LDQTHRQRQPA------ 211 (481)
T ss_pred HHHhcCCcccCCc-eEEEEEEecCCCceeEec---------ccCCCCCcCCCCCCCCCCC---cCccccccccc------
Confidence 9999999866554 468888886542111000 0000010000000000000 00000000000
Q ss_pred CCCCCCCCCCCCcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 239 YRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPG 318 (434)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (434)
.....+................+ ......++|.. ..+..+.... ...+.+
T Consensus 212 -----------~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~------------~~~~~~~~~~-~~~~~~---- 261 (481)
T TIGR01649 212 -----------LLGQHPSSYGHDGYSSHGGPLAP--LAGGDRMGPPH------------GPPSRYRPAY-EAAPLA---- 261 (481)
T ss_pred -----------cccCCCccCCCcccccCCCCCCc--ccccccCCCcc------------cCCCCCcccc-cccccC----
Confidence 00000000000000000000000 00000000000 0000000000 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEe
Q 013926 319 SVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQ-EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSY 397 (434)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~-~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f 397 (434)
. ..+ . ......+++++|||+||+. .+|+++|+++|+.||+|.+|+|++++ +|+|||+|
T Consensus 262 ---~-------~~~---~---~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f 320 (481)
T TIGR01649 262 ---P-------AIS---S---YGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEM 320 (481)
T ss_pred ---c-------ccc---c---cCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEE
Confidence 0 000 0 0001134678999999997 69999999999999999999999873 68999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 013926 398 ESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 428 (434)
Q Consensus 398 ~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~~ 428 (434)
.+.++|.+|++.|||..|.|++|+|.+++.+
T Consensus 321 ~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 321 ADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 9999999999999999999999999998765
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=6.4e-40 Score=319.73 Aligned_cols=247 Identities=25% Similarity=0.429 Sum_probs=202.6
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCcee
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 89 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~ 89 (434)
....++|||+|||++++|++|+++|+.||+|.+|+++.| .++.++ ||||+|.+.++|++||+.||+..+..++ .+.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr--~l~ 131 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGR--LLG 131 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCc--ccc
Confidence 345699999999999999999999999999999999999 678888 9999999999999999999998766563 344
Q ss_pred eeccCcccccCCCeEEEeCCCCCCcHHHHHHhhhccCC-eeEEEEccC--CCCCcceEEEEEeCCHHHHHHHHHHhcCC-
Q 013926 90 VKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT-IKDLQILRG--SQQTSKGCAFLKYETKEQALAALEAINGK- 165 (434)
Q Consensus 90 ~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~-i~~i~~~~~--~~~~~~g~a~V~f~~~~~a~~a~~~l~~~- 165 (434)
+..+. ..++|||+|||.++++++|+++|+.++. +..+.+... ..++++|||||+|++.++|..|++.|+..
T Consensus 132 V~~S~-----~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk 206 (578)
T TIGR01648 132 VCISV-----DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR 206 (578)
T ss_pred ccccc-----cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc
Confidence 43332 2478999999999999999999999864 444444322 24567899999999999999999988643
Q ss_pred ccCCCCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCC
Q 013926 166 HKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQ 245 (434)
Q Consensus 166 ~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 245 (434)
..++|+ .|.|.|+.+..+....
T Consensus 207 i~l~Gr--~I~VdwA~p~~~~d~~-------------------------------------------------------- 228 (578)
T TIGR01648 207 IQLWGH--VIAVDWAEPEEEVDED-------------------------------------------------------- 228 (578)
T ss_pred eEecCc--eEEEEeeccccccccc--------------------------------------------------------
Confidence 235565 5788888544210000
Q ss_pred CCCCCcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 246 NQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVA 325 (434)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (434)
T Consensus 229 -------------------------------------------------------------------------------- 228 (578)
T TIGR01648 229 -------------------------------------------------------------------------------- 228 (578)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEEEecCCCCCeeeEEEEEeCCHHHH
Q 013926 326 NSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAF--GRVLSAKVFVDKATGVSKCFGFVSYESPASA 403 (434)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~f--G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A 403 (434)
.....++|||+||+.++|+++|+++|+.| |+|.+|++++ +||||+|.+.++|
T Consensus 229 ------------------~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A 282 (578)
T TIGR01648 229 ------------------VMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDA 282 (578)
T ss_pred ------------------ccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHH
Confidence 00123689999999999999999999999 9999998753 4999999999999
Q ss_pred HHHHHHhCCceeCCeEEEEEEecCCc
Q 013926 404 QNAIAMMNGCQLGGKKLKVQLKRDNK 429 (434)
Q Consensus 404 ~~A~~~l~g~~l~g~~i~v~~a~~~~ 429 (434)
.+|++.|||..|.|+.|+|+||+.+.
T Consensus 283 ~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 283 VKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred HHHHHHhCCCEECCEEEEEEEccCCC
Confidence 99999999999999999999998754
No 9
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.3e-38 Score=289.60 Aligned_cols=339 Identities=23% Similarity=0.341 Sum_probs=232.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeec
Q 013926 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 92 (434)
Q Consensus 14 ~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~ 92 (434)
..+|||++||++++.++|.++|+.+|+|..|.++.++++..++ |+||.|.-.+|+++|+...++.. +.|+. +++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~k-f~Gr~--l~v~~ 81 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSK-FEGRI--LNVDP 81 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCc-cccee--ccccc
Confidence 3899999999999999999999999999999999999998999 99999999999999999998765 66743 33333
Q ss_pred cCcc--cc-------------------------cCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEE
Q 013926 93 ADGE--LE-------------------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCA 145 (434)
Q Consensus 93 ~~~~--~~-------------------------~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a 145 (434)
+..+ .. ....+|+|+|||+.+...+|+.+|+.||.|.+|.|++..+|.-.|||
T Consensus 82 A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFa 161 (678)
T KOG0127|consen 82 AKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFA 161 (678)
T ss_pred ccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceE
Confidence 3211 10 01358999999999999999999999999999999988888877999
Q ss_pred EEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeeccChHHHHHHHHHH---HhhhccCCCCCCCCCCCCcCCCCCCCCCC
Q 013926 146 FLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQK---AQSQANNLPNADSQHPSLFGALPMGYAPP 222 (434)
Q Consensus 146 ~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (434)
||+|....+|.+|++.+|+.. |+|+ +|-|.||.++.......... ..................... ..-.+.
T Consensus 162 FV~fk~~~dA~~Al~~~N~~~-i~gR--~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~--~~Ed~e 236 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGNK-IDGR--PVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDF--DEEDGE 236 (678)
T ss_pred EEEEeeHHHHHHHHHhccCce-ecCc--eeEEeeecccccccccchhhhhhhhhccchhhhccccccccccc--chhccc
Confidence 999999999999999999976 8888 68999998887654432110 000000000000000000000 000000
Q ss_pred CCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 223 YNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMP 302 (434)
Q Consensus 223 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 302 (434)
.+...- -...+....
T Consensus 237 ~d~ede------------------------------------------------Ee~D~~se~----------------- 251 (678)
T KOG0127|consen 237 EDSEDE------------------------------------------------EETDGNSEA----------------- 251 (678)
T ss_pred cccccc------------------------------------------------ccccccchh-----------------
Confidence 000000 000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEe
Q 013926 303 YPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFV 382 (434)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~ 382 (434)
...+. ........+.... .+....+-..+.......+.....||||+|||+++|+++|.+.|++||.|.++.|..
T Consensus 252 ~ee~~----~~Eee~~~vDd~e-~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~ 326 (678)
T KOG0127|consen 252 FEEGE----ESEEEEDDVDDEE-SSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVK 326 (678)
T ss_pred hhccc----ccccccccccccc-ccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEe
Confidence 00000 0000000000000 000000001111111233344568999999999999999999999999999999999
Q ss_pred cCCCCCeeeEEEEEeCCHHHHHHHHHHhC-----C-ceeCCeEEEEEEecCCcC
Q 013926 383 DKATGVSKCFGFVSYESPASAQNAIAMMN-----G-CQLGGKKLKVQLKRDNKQ 430 (434)
Q Consensus 383 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g-~~l~g~~i~v~~a~~~~~ 430 (434)
++.++.++|.|||.|.+..+|+.|+.+.. | ..|+||.|+|.+|-.+++
T Consensus 327 ~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 327 DKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred ccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHH
Confidence 99999999999999999999999999872 4 889999999999987764
No 10
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=8.4e-37 Score=298.08 Aligned_cols=166 Identities=19% Similarity=0.342 Sum_probs=144.4
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
...++|||+|||+++++++|+++|..||+|.+|.++.++.+++++ ||||+|.+.++|++|++.||+.. +.| +.|++
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~-i~G--R~IkV 181 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM-LGG--RNIKV 181 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeE-Eec--ceeee
Confidence 456899999999999999999999999999999999999999988 99999999999999999998865 666 55555
Q ss_pred eccCccc------------ccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHH
Q 013926 91 KYADGEL------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALA 157 (434)
Q Consensus 91 ~~~~~~~------------~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~ 157 (434)
....... ....++|||+||+.++++++|+++|+.||.|..+.+.++. ++.++|||||+|.+.++|.+
T Consensus 182 ~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 182 GRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred cccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 4432111 1124689999999999999999999999999999999987 56789999999999999999
Q ss_pred HHHHhcCCccCCCCcceEEEeeccCh
Q 013926 158 ALEAINGKHKMEGSSVPLVVKWADTE 183 (434)
Q Consensus 158 a~~~l~~~~~~~g~~~~i~v~~a~~~ 183 (434)
|++.+|+.. ++|+ .|.|.++.+.
T Consensus 262 AI~amNg~e-lgGr--~LrV~kAi~p 284 (612)
T TIGR01645 262 AIASMNLFD-LGGQ--YLRVGKCVTP 284 (612)
T ss_pred HHHHhCCCe-eCCe--EEEEEecCCC
Confidence 999999976 7777 6788888643
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.2e-36 Score=300.96 Aligned_cols=166 Identities=30% Similarity=0.480 Sum_probs=141.9
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
.+.+.++|||+|||+.+++++|+++|+.||.|.+|.+++++.++.++ ||||+|.+.++|.+||. +++.. +.| ++|
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~-~~g--~~i 160 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQM-LLG--RPI 160 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCE-ECC--eee
Confidence 34567899999999999999999999999999999999999999888 99999999999999996 66665 555 555
Q ss_pred eeeccCcccc-------------cCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHH
Q 013926 89 QVKYADGELE-------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQ 154 (434)
Q Consensus 89 ~~~~~~~~~~-------------~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~ 154 (434)
.+........ ...++|||+|||..+++++|+++|+.||.|..|.+..+. +|.++|||||+|.+.++
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 161 IVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred EEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 5544321110 114789999999999999999999999999999998887 56899999999999999
Q ss_pred HHHHHHHhcCCccCCCCcceEEEeeccC
Q 013926 155 ALAALEAINGKHKMEGSSVPLVVKWADT 182 (434)
Q Consensus 155 a~~a~~~l~~~~~~~g~~~~i~v~~a~~ 182 (434)
|.+|++.|+|.. +.|+ .|.|.|+..
T Consensus 241 A~~A~~~l~g~~-i~g~--~i~v~~a~~ 265 (457)
T TIGR01622 241 AKEALEVMNGFE-LAGR--PIKVGYAQD 265 (457)
T ss_pred HHHHHHhcCCcE-ECCE--EEEEEEccC
Confidence 999999999966 6776 688888763
No 12
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-37 Score=259.62 Aligned_cols=239 Identities=23% Similarity=0.479 Sum_probs=189.3
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
+.+-++|||+||..++||+.|..||++.|.|.+|+++.+... . ....-.+
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~---------------------v--~wa~~p~------- 52 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELK---------------------V--NWATAPG------- 52 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhhc---------------------c--ccccCcc-------
Confidence 345689999999999999999999999999999999886210 0 0000000
Q ss_pred eccCcccccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 013926 91 KYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 169 (434)
Q Consensus 91 ~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~ 169 (434)
............|||+.|..+++.++|++.|..||+|.+.++++|. +++++||+||.|-+.++|+.||+.+||.. ++
T Consensus 53 -nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW-lG 130 (321)
T KOG0148|consen 53 -NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW-LG 130 (321)
T ss_pred -cCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee-ec
Confidence 0000011114569999999999999999999999999999999998 88999999999999999999999999987 66
Q ss_pred CCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCC
Q 013926 170 GSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 249 (434)
Q Consensus 170 g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 249 (434)
++ .|+-.||..+...... .
T Consensus 131 ~R--~IRTNWATRKp~e~n~------------------~----------------------------------------- 149 (321)
T KOG0148|consen 131 RR--TIRTNWATRKPSEMNG------------------K----------------------------------------- 149 (321)
T ss_pred cc--eeeccccccCccccCC------------------C-----------------------------------------
Confidence 66 6899999766300000 0
Q ss_pred CcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 250 FHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 329 (434)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (434)
.+.+...+.+
T Consensus 150 ----------------------------------------------~ltfdeV~NQ------------------------ 159 (321)
T KOG0148|consen 150 ----------------------------------------------PLTFDEVYNQ------------------------ 159 (321)
T ss_pred ----------------------------------------------CccHHHHhcc------------------------
Confidence 0000000000
Q ss_pred CCCCCCCCCCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013926 330 STSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409 (434)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 409 (434)
..+.+|+|||+|++..+|+++|++.|+.||.|..|+|.++ +||+||.|.+.|.|.+|+..
T Consensus 160 --------------ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~ 219 (321)
T KOG0148|consen 160 --------------SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQ 219 (321)
T ss_pred --------------CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHH
Confidence 2336799999999999999999999999999999999987 57999999999999999999
Q ss_pred hCCceeCCeEEEEEEecCCcCCC
Q 013926 410 MNGCQLGGKKLKVQLKRDNKQNK 432 (434)
Q Consensus 410 l~g~~l~g~~i~v~~a~~~~~~~ 432 (434)
+|+..|+|+.|+|.|.|......
T Consensus 220 mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 220 MNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred hcCceeCceEEEEeccccCCCCC
Confidence 99999999999999999876543
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.2e-35 Score=292.70 Aligned_cols=279 Identities=23% Similarity=0.333 Sum_probs=203.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeeccC
Q 013926 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYAD 94 (434)
Q Consensus 15 ~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~~ 94 (434)
.+|||+||++.+|+++|+++|+.||.|.+|.++++..+ .+|||+|.+.++|.+|++.|||..++.+. +.+++.++.
T Consensus 97 ~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~---~~afVef~~~~~A~~A~~~Lng~~i~~~~-~~l~v~~sk 172 (481)
T TIGR01649 97 LRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNV---FQALVEFESVNSAQHAKAALNGADIYNGC-CTLKIEYAK 172 (481)
T ss_pred EEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCc---eEEEEEECCHHHHHHHHHHhcCCcccCCc-eEEEEEEec
Confidence 47999999999999999999999999999999876543 28999999999999999999998865542 223322221
Q ss_pred c----------cc-------------------------------------------------------------------
Q 013926 95 G----------EL------------------------------------------------------------------- 97 (434)
Q Consensus 95 ~----------~~------------------------------------------------------------------- 97 (434)
. +.
T Consensus 173 ~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (481)
T TIGR01649 173 PTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYR 252 (481)
T ss_pred CCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCc
Confidence 0 00
Q ss_pred -------------------ccCCCeEEEeCCCC-CCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHH
Q 013926 98 -------------------ERLEHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 157 (434)
Q Consensus 98 -------------------~~~~~~v~v~nlp~-~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~ 157 (434)
.....+|||+||+. .+++++|+++|+.||.|..|++++++ +|+|||+|.+.++|..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~ 328 (481)
T TIGR01649 253 PAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQL 328 (481)
T ss_pred ccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHH
Confidence 01245899999997 69999999999999999999998763 6899999999999999
Q ss_pred HHHHhcCCccCCCCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcc
Q 013926 158 ALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLM 237 (434)
Q Consensus 158 a~~~l~~~~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 237 (434)
|+..||+.. +.|+ +|.|.++.......... . ....+. ..+..
T Consensus 329 Ai~~lng~~-l~g~--~l~v~~s~~~~~~~~~~--------~--------------~~~~~~-~~~~d------------ 370 (481)
T TIGR01649 329 ALTHLNGVK-LFGK--PLRVCPSKQQNVQPPRE--------G--------------QLDDGL-TSYKD------------ 370 (481)
T ss_pred HHHHhCCCE-ECCc--eEEEEEcccccccCCCC--------C--------------cCcCCC-ccccc------------
Confidence 999999987 6776 57777764432100000 0 000000 00000
Q ss_pred cCCCCCCCCCCCCcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 238 QYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSP 317 (434)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (434)
+. ......+ .
T Consensus 371 -~~-----------------------------------------------~~~~~r~-----~----------------- 380 (481)
T TIGR01649 371 -YS-----------------------------------------------SSRNHRF-----K----------------- 380 (481)
T ss_pred -cc-----------------------------------------------CCccccC-----C-----------------
Confidence 00 0000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCC--eEEEEEEecCCCCCeeeEEEE
Q 013926 318 GSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGR--VLSAKVFVDKATGVSKCFGFV 395 (434)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~--v~~v~i~~~~~~g~~~g~afV 395 (434)
. .. ........+++.+|||+|||..+++++|+++|+.||. |.++++...+ + ..+|+|||
T Consensus 381 --------~--------~~-~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~-~~~~~gfV 441 (481)
T TIGR01649 381 --------K--------PG-SANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-N-ERSKMGLL 441 (481)
T ss_pred --------C--------cc-cccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-C-CcceeEEE
Confidence 0 00 0000001235678999999999999999999999998 8888886543 3 35889999
Q ss_pred EeCCHHHHHHHHHHhCCceeCCeE------EEEEEecCC
Q 013926 396 SYESPASAQNAIAMMNGCQLGGKK------LKVQLKRDN 428 (434)
Q Consensus 396 ~f~~~~~A~~A~~~l~g~~l~g~~------i~v~~a~~~ 428 (434)
+|.+.++|.+|+..|||+.|.|+. |+|+||+++
T Consensus 442 eF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 442 EWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 999999999999999999999985 999999875
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=6e-35 Score=292.92 Aligned_cols=275 Identities=21% Similarity=0.339 Sum_probs=198.3
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhcc------------CceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhcc
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEF------------ALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHN 77 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~------------g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~ 77 (434)
.....++|||+|||+++|+++|+++|..+ +.|..+.+..++. ||||+|.+.++|+.|| .||+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg-----~afVeF~~~e~A~~Al-~l~g 244 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKN-----FAFLEFRTVEEATFAM-ALDS 244 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCC-----EEEEEeCCHHHHhhhh-cCCC
Confidence 45567899999999999999999999975 3455555443332 9999999999999999 4877
Q ss_pred CccCCCCCCceeeeccCcc------------------------------cccCCCeEEEeCCCCCCcHHHHHHhhhccCC
Q 013926 78 KKTLPGASSPLQVKYADGE------------------------------LERLEHKLFIGMLPKNVSEAEVSALFSIYGT 127 (434)
Q Consensus 78 ~~~~~g~~~~i~~~~~~~~------------------------------~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~ 127 (434)
.. +.| ..|.+...... .....++|||+|||..+++++|+++|+.||.
T Consensus 245 ~~-~~g--~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~ 321 (509)
T TIGR01642 245 II-YSN--VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD 321 (509)
T ss_pred eE-eeC--ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 64 555 44444322110 0112468999999999999999999999999
Q ss_pred eeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCC
Q 013926 128 IKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADS 206 (434)
Q Consensus 128 i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (434)
|..+.++++. +|.++|||||+|.+.++|..|++.|+|.. ++|. .|.|.++......... ..
T Consensus 322 i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~-~~~~--~l~v~~a~~~~~~~~~------------~~--- 383 (509)
T TIGR01642 322 LKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKD-TGDN--KLHVQRACVGANQATI------------DT--- 383 (509)
T ss_pred eeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE-ECCe--EEEEEECccCCCCCCc------------cc---
Confidence 9999998886 78899999999999999999999999987 6666 5788887432100000 00
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCC
Q 013926 207 QHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGF 286 (434)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 286 (434)
. .+. .+ ....+..
T Consensus 384 -------~--~~~-~~--------------------------------------------------------~~~~~~~- 396 (509)
T TIGR01642 384 -------S--NGM-AP--------------------------------------------------------VTLLAKA- 396 (509)
T ss_pred -------c--ccc-cc--------------------------------------------------------ccccccc-
Confidence 0 000 00 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEcCCCCC--C----
Q 013926 287 VGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQE--F---- 360 (434)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~--~---- 360 (434)
... ........+..+|+|.||... +
T Consensus 397 ----------------~~~---------------------------------~~~~~~~~~s~v~~l~N~~~~~~l~~d~ 427 (509)
T TIGR01642 397 ----------------LSQ---------------------------------SILQIGGKPTKVVQLTNLVTGDDLMDDE 427 (509)
T ss_pred ----------------chh---------------------------------hhccccCCCceEEEeccCCchhHhcCcc
Confidence 000 000001124578999999532 1
Q ss_pred ----CHHHHHHHhhccCCeEEEEEEecC---CCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 013926 361 ----GDQELGNAFQAFGRVLSAKVFVDK---ATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 427 (434)
Q Consensus 361 ----t~~~L~~~F~~fG~v~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~ 427 (434)
..++|+++|++||.|.+|+|++.. ..+...|+|||+|.+.++|++|+..|||..|+|+.|.|.|...
T Consensus 428 ~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 428 EYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred hHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 236899999999999999998753 2456679999999999999999999999999999999998653
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-32 Score=253.42 Aligned_cols=246 Identities=27% Similarity=0.480 Sum_probs=214.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeeccC
Q 013926 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYAD 94 (434)
Q Consensus 15 ~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~~ 94 (434)
..|||+ +++||.+|.++|+.+|+|.++++.+|. | .-+||||.|.+.++|.+||+.+|... +.| +++++.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~-~~~--~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDV-LKG--KPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcc-cCC--cEEEeehhc
Confidence 468999 899999999999999999999999998 7 33499999999999999999998765 666 888888876
Q ss_pred cccccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcce
Q 013926 95 GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVP 174 (434)
Q Consensus 95 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~ 174 (434)
..... |||.||+++++..+|+++|+.||.|..+++..+..| ++|| ||+|++++.|++|++.+||.. +.+. +
T Consensus 74 rd~~~----~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~l-l~~k--k 144 (369)
T KOG0123|consen 74 RDPSL----VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGML-LNGK--K 144 (369)
T ss_pred cCCce----eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcc-cCCC--e
Confidence 55433 999999999999999999999999999999999988 7999 999999999999999999975 6666 5
Q ss_pred EEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCC
Q 013926 175 LVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGII 254 (434)
Q Consensus 175 i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 254 (434)
|.|.....+.++.+.....
T Consensus 145 i~vg~~~~~~er~~~~~~~------------------------------------------------------------- 163 (369)
T KOG0123|consen 145 IYVGLFERKEEREAPLGEY------------------------------------------------------------- 163 (369)
T ss_pred eEEeeccchhhhcccccch-------------------------------------------------------------
Confidence 7888887776543331110
Q ss_pred CCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 255 PPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSS 334 (434)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (434)
T Consensus 164 -------------------------------------------------------------------------------- 163 (369)
T KOG0123|consen 164 -------------------------------------------------------------------------------- 163 (369)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCce
Q 013926 335 GGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ 414 (434)
Q Consensus 335 ~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 414 (434)
...-++++|.|++.++++++|.++|+.||.|.++.++.+. .|+++|||||.|.+.++|..|+..||+..
T Consensus 164 ----------~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~ 232 (369)
T KOG0123|consen 164 ----------KKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKI 232 (369)
T ss_pred ----------hhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCc
Confidence 0022569999999999999999999999999999999985 78899999999999999999999999999
Q ss_pred eCCeEEEEEEecCCc
Q 013926 415 LGGKKLKVQLKRDNK 429 (434)
Q Consensus 415 l~g~~i~v~~a~~~~ 429 (434)
++|..+.|..+..+.
T Consensus 233 ~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 233 FGDKELYVGRAQKKS 247 (369)
T ss_pred CCccceeecccccch
Confidence 999999998887643
No 16
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.2e-32 Score=230.63 Aligned_cols=343 Identities=39% Similarity=0.581 Sum_probs=209.5
Q ss_pred CCceeeeccCccccc-CCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 013926 85 SSPLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 163 (434)
Q Consensus 85 ~~~i~~~~~~~~~~~-~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~ 163 (434)
.++|.|+.++.+... .+++|||+-|.+.-.|+|++.+|..||.|+++.+.+..+|.++|++||.|.+..+|+.||..|+
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLH 81 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALH 81 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhc
Confidence 477888888766655 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCC---------------CCCCCCCCCCCC-
Q 013926 164 GKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGAL---------------PMGYAPPYNGYG- 227 (434)
Q Consensus 164 ~~~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~- 227 (434)
|..-+.|-...+.|+++++.+|+..++.++...+............. ++.- ...++.+.....
T Consensus 82 gSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~-~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~ 160 (371)
T KOG0146|consen 82 GSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGA-YGAYAQALMQQQAALLATVAGPYLSPMAAFAA 160 (371)
T ss_pred ccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccch-hHHHHHHHHHHHHHHHHhhcccccChhhhhHH
Confidence 99999998889999999999999999998887765544331110000 0000 000000000000
Q ss_pred --cCCCCCcCcccCCCCCCCCCCCCcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCC
Q 013926 228 --YQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGS----GYPAVPGLQYPM 301 (434)
Q Consensus 228 --~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~~~~~~~~~~~~ 301 (434)
.+..+.....+....|..+..+.. .++ ....+.-+..+...+..++..-++...+. ......-..|+.
T Consensus 161 ~~mQ~~aA~~angl~A~Pv~p~s~~~---~pp---~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypa 234 (371)
T KOG0146|consen 161 AQMQQMAALNANGLAAAPVTPASGGS---TPP---GIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPA 234 (371)
T ss_pred HHHHHHHHHhhcccccCCcCccccCC---CCC---cccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCC
Confidence 000000000000000000000000 000 00000000000000000000000000000 000000001111
Q ss_pred CCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEE
Q 013926 302 PYPGGMLGHRPLNNSPGS----VSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS 377 (434)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~ 377 (434)
..|.-..+.......-.. ....+....+.-...+..-+.-+.+++.+|+|||-.||.+..+.||...|-.||.|++
T Consensus 235 Qsp~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivS 314 (371)
T KOG0146|consen 235 QSPTVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVS 314 (371)
T ss_pred CCccccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceee
Confidence 111111111100000000 0111111111111122222223457889999999999999999999999999999999
Q ss_pred EEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCCcCCCCC
Q 013926 378 AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDNKQNKPY 434 (434)
Q Consensus 378 v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~~~~~~~~ 434 (434)
.++..|+.++++|+||||.|.|+.+|+.|+.+|||..|+=++|+|.+.|.|.+.+||
T Consensus 315 aKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanRPY 371 (371)
T KOG0146|consen 315 AKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 371 (371)
T ss_pred eeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=4.3e-31 Score=247.13 Aligned_cols=264 Identities=30% Similarity=0.501 Sum_probs=215.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeeccCc
Q 013926 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG 95 (434)
Q Consensus 17 l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~~~ 95 (434)
|||.||++++|..+|.++|+.||.|.+|++..+.+. ++ | ||.|.++++|++|++.+||.. +.+ ..|.+.....
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a~~ai~~~ng~l-l~~--kki~vg~~~~ 152 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEESAKKAIEKLNGML-LNG--KKIYVGLFER 152 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHHHHHHHHHhcCcc-cCC--CeeEEeeccc
Confidence 999999999999999999999999999999999865 66 8 999999999999999999864 555 4444433322
Q ss_pred cc---------ccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCc
Q 013926 96 EL---------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKH 166 (434)
Q Consensus 96 ~~---------~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~ 166 (434)
+. ......+++.+++.+.+.+.|.++|..+|.|..+.++.+..+.+++++||.|.+.++|..|++.+++..
T Consensus 153 ~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~ 232 (369)
T KOG0123|consen 153 KEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKI 232 (369)
T ss_pred hhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCc
Confidence 21 122467899999999999999999999999999999999999899999999999999999999999976
Q ss_pred cCCCCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCC
Q 013926 167 KMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQN 246 (434)
Q Consensus 167 ~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 246 (434)
+++. .+.|..+..+.++............. .+
T Consensus 233 -~~~~--~~~V~~aqkk~e~~~~l~~~~~~~~~-~~-------------------------------------------- 264 (369)
T KOG0123|consen 233 -FGDK--ELYVGRAQKKSEREAELKRKFEQEFA-KR-------------------------------------------- 264 (369)
T ss_pred -CCcc--ceeecccccchhhHHHHhhhhHhhhh-hc--------------------------------------------
Confidence 5555 46666665533332222111000000 00
Q ss_pred CCCCcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 247 QPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVAN 326 (434)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (434)
T Consensus 265 -------------------------------------------------------------------------------- 264 (369)
T KOG0123|consen 265 -------------------------------------------------------------------------------- 264 (369)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHH
Q 013926 327 SNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNA 406 (434)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 406 (434)
.......+|||+||+..++.+.|++.|+.||+|.+++|+.+ +.|+++|||||.|.+.++|.+|
T Consensus 265 ----------------~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~-~~g~skG~gfV~fs~~eeA~~A 327 (369)
T KOG0123|consen 265 ----------------SVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVD-ENGKSKGFGFVEFSSPEEAKKA 327 (369)
T ss_pred ----------------cccccccccccccCccccchhHHHHHHhcccceeeEEEEec-cCCCccceEEEEcCCHHHHHHH
Confidence 00113457999999999999999999999999999999998 5899999999999999999999
Q ss_pred HHHhCCceeCCeEEEEEEecCCcCC
Q 013926 407 IAMMNGCQLGGKKLKVQLKRDNKQN 431 (434)
Q Consensus 407 ~~~l~g~~l~g~~i~v~~a~~~~~~ 431 (434)
+..+|+..++++.|.|.+++.+..+
T Consensus 328 ~~~~n~~~i~~k~l~vav~qr~~~r 352 (369)
T KOG0123|consen 328 MTEMNGRLIGGKPLYVAVAQRKEDR 352 (369)
T ss_pred HHhhChhhhcCCchhhhHHhhhccc
Confidence 9999999999999999999865543
No 18
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.98 E-value=2.3e-31 Score=247.89 Aligned_cols=170 Identities=26% Similarity=0.494 Sum_probs=150.0
Q ss_pred CCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEe
Q 013926 100 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 178 (434)
Q Consensus 100 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~ 178 (434)
..++|||+|||+++++++|+++|+.||+|..|+|+++. +++++|||||+|.++++|++|++.|++.. +.++ +|+|.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~-l~gr--~i~V~ 182 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGIT-VRNK--RLKVS 182 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCc-cCCc--eeeee
Confidence 36899999999999999999999999999999999886 78899999999999999999999999977 5555 57777
Q ss_pred eccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCC
Q 013926 179 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 258 (434)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 258 (434)
++.+...
T Consensus 183 ~a~p~~~------------------------------------------------------------------------- 189 (346)
T TIGR01659 183 YARPGGE------------------------------------------------------------------------- 189 (346)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 7632100
Q ss_pred CCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 259 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 338 (434)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (434)
T Consensus 190 -------------------------------------------------------------------------------- 189 (346)
T TIGR01659 190 -------------------------------------------------------------------------------- 189 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC-
Q 013926 339 SGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG- 417 (434)
Q Consensus 339 ~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g- 417 (434)
....++|||+|||.++|+++|+++|++||+|++++|++++.+++++|||||+|.+.++|++|++.||+..+.|
T Consensus 190 ------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~ 263 (346)
T TIGR01659 190 ------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGG 263 (346)
T ss_pred ------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 0023579999999999999999999999999999999999899999999999999999999999999999976
Q ss_pred -eEEEEEEecCCcCC
Q 013926 418 -KKLKVQLKRDNKQN 431 (434)
Q Consensus 418 -~~i~v~~a~~~~~~ 431 (434)
++|+|.+|+.+...
T Consensus 264 ~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 264 SQPLTVRLAEEHGKA 278 (346)
T ss_pred ceeEEEEECCccccc
Confidence 78999999876543
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=9.2e-30 Score=237.15 Aligned_cols=172 Identities=27% Similarity=0.495 Sum_probs=153.1
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
.......++|||+|||+++||++|+++|+.||+|++|++++++.++.++ ||||+|.+.++|++||+.||+.. +.+ +
T Consensus 101 ~~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~-l~g--r 177 (346)
T TIGR01659 101 NDTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGIT-VRN--K 177 (346)
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCc-cCC--c
Confidence 3566788999999999999999999999999999999999999999998 99999999999999999999876 445 6
Q ss_pred ceeeeccCcccc-cCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcC
Q 013926 87 PLQVKYADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 164 (434)
Q Consensus 87 ~i~~~~~~~~~~-~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~ 164 (434)
.|++.++.+... ..+++|||+|||.++++++|+++|++||.|..+.++.+. +++++|+|||+|.+.++|++||+.||+
T Consensus 178 ~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 178 RLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred eeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 788877754332 236789999999999999999999999999999998887 788999999999999999999999999
Q ss_pred CccCCCCcceEEEeeccCh
Q 013926 165 KHKMEGSSVPLVVKWADTE 183 (434)
Q Consensus 165 ~~~~~g~~~~i~v~~a~~~ 183 (434)
.. +.+..++|.|.++...
T Consensus 258 ~~-~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 258 VI-PEGGSQPLTVRLAEEH 275 (346)
T ss_pred Cc-cCCCceeEEEEECCcc
Confidence 76 6666678999999764
No 20
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2.4e-28 Score=214.88 Aligned_cols=164 Identities=20% Similarity=0.355 Sum_probs=139.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeec
Q 013926 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 92 (434)
Q Consensus 14 ~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~ 92 (434)
-|+|||+.|.+...|+.|+..|..||+|.+|.+-+|..|++++ ||||+|+-+|.|+-|+++||+. +++| +.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~-mlGG--RNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQ-MLGG--RNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccc-cccC--ccccccC
Confidence 3789999999999999999999999999999999999999999 9999999999999999999886 5888 4444443
Q ss_pred cCccc------------ccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCC-CCcceEEEEEeCCHHHHHHHH
Q 013926 93 ADGEL------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQ-QTSKGCAFLKYETKEQALAAL 159 (434)
Q Consensus 93 ~~~~~------------~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~-~~~~g~a~V~f~~~~~a~~a~ 159 (434)
+.... .+.-.+|||..+-++++++||+.+|+.||+|..+.+-++.+ +..+||+||+|.+......|+
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 32211 12247899999999999999999999999999999999885 458999999999999999999
Q ss_pred HHhcCCccCCCCcceEEEeeccCh
Q 013926 160 EAINGKHKMEGSSVPLVVKWADTE 183 (434)
Q Consensus 160 ~~l~~~~~~~g~~~~i~v~~a~~~ 183 (434)
..+|--. ++|. .++|..+.+.
T Consensus 270 asMNlFD-LGGQ--yLRVGk~vTP 290 (544)
T KOG0124|consen 270 ASMNLFD-LGGQ--YLRVGKCVTP 290 (544)
T ss_pred hhcchhh-cccc--eEecccccCC
Confidence 9888644 5555 5777776543
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1.6e-29 Score=247.13 Aligned_cols=179 Identities=24% Similarity=0.403 Sum_probs=149.4
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEee
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 179 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~ 179 (434)
.++|||+||++++++++|+++|+.||.|..|.++.+. +++++|||||+|.+.++|.+|++.|||.. ++|+ .|.|.+
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~-i~GR--~IkV~r 183 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM-LGGR--NIKVGR 183 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeE-Eecc--eeeecc
Confidence 5789999999999999999999999999999998886 78899999999999999999999999976 7787 455543
Q ss_pred ccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCC
Q 013926 180 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 259 (434)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 259 (434)
..... .... ..
T Consensus 184 p~~~p------------------~a~~----------------~~----------------------------------- 194 (612)
T TIGR01645 184 PSNMP------------------QAQP----------------II----------------------------------- 194 (612)
T ss_pred ccccc------------------cccc----------------cc-----------------------------------
Confidence 21100 0000 00
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 260 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 339 (434)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (434)
.
T Consensus 195 -------------------------------------------------------------~------------------ 195 (612)
T TIGR01645 195 -------------------------------------------------------------D------------------ 195 (612)
T ss_pred -------------------------------------------------------------c------------------
Confidence 0
Q ss_pred CCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 013926 340 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 419 (434)
Q Consensus 340 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~ 419 (434)
.........++|||+|||.++++++|+++|+.||.|.+++|.+++.+|+++|||||+|.+.++|.+|++.||+..|+|+.
T Consensus 196 ~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~ 275 (612)
T TIGR01645 196 MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQY 275 (612)
T ss_pred cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 00000113368999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred EEEEEecCCcC
Q 013926 420 LKVQLKRDNKQ 430 (434)
Q Consensus 420 i~v~~a~~~~~ 430 (434)
|+|.++..++.
T Consensus 276 LrV~kAi~pP~ 286 (612)
T TIGR01645 276 LRVGKCVTPPD 286 (612)
T ss_pred EEEEecCCCcc
Confidence 99999987654
No 22
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.96 E-value=3.5e-27 Score=210.66 Aligned_cols=309 Identities=20% Similarity=0.296 Sum_probs=200.1
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
..+++.|.+||||++++|+||.+++..||+|+++.+.+.++ .||++|.+.++|...+..+.... -.-+..++.+
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn-----QAflem~d~~sAvtmv~~y~~~~-p~lr~~~~yi 98 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN-----QAFLEMADEESAVTMVNYYTSVT-PVLRGQPIYI 98 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch-----hhhhhhcchhhhhheeecccccC-ccccCcceee
Confidence 45889999999999999999999999999999999988766 89999999999998555432211 0111133333
Q ss_pred eccCccc------------------------------------c-----cCCCeEEEeCCCCCCcHHHHHHhhhccCCee
Q 013926 91 KYADGEL------------------------------------E-----RLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 129 (434)
Q Consensus 91 ~~~~~~~------------------------------------~-----~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~ 129 (434)
.++.-.. . ..--+++|.++-+.++.+.|+.+|+.||.|.
T Consensus 99 q~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~Vl 178 (492)
T KOG1190|consen 99 QYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVL 178 (492)
T ss_pred hhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeE
Confidence 3221000 0 0012578889999999999999999999999
Q ss_pred EEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCC
Q 013926 130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHP 209 (434)
Q Consensus 130 ~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (434)
.|.-+....+. .|+|+|.+.+.|..|...|+|..+.+|| +.|++.+..-... .....+...++-.+|
T Consensus 179 KIiTF~Knn~F---QALvQy~d~~sAq~AK~aLdGqnIyngc-CtLrId~Sklt~L---------nvKynndkSRDyTnp 245 (492)
T KOG1190|consen 179 KIITFTKNNGF---QALVQYTDAVSAQAAKLALDGQNIYNGC-CTLRIDFSKLTDL---------NVKYNNDKSRDYTNP 245 (492)
T ss_pred EEEEEecccch---hhhhhccchhhHHHHHHhccCCcccCce-eEEEeehhhcccc---------eeeccccccccccCC
Confidence 88766554433 6899999999999999999999999988 5677766533110 000000000000000
Q ss_pred CCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 210 SLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGS 289 (434)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 289 (434)
..|.| .+.+ .+.........
T Consensus 246 ----~LP~g---------------d~~p-----------~l~~~~~aa~~------------------------------ 265 (492)
T KOG1190|consen 246 ----DLPVG---------------DGQP-----------SLDQLMAAAFG------------------------------ 265 (492)
T ss_pred ----CCCCC---------------cccc-----------ccchhhhcccc------------------------------
Confidence 00000 0000 00000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCccCCCCceEEEcCCCC-CCCHHHHHH
Q 013926 290 GYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGG-TGSGGQIEGPPGANLFIYHIPQ-EFGDQELGN 367 (434)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~V~nLp~-~~t~~~L~~ 367 (434)
..+..+| .+...|. ....+..+ ...+... .+++|.|.||.. .+|.+-|..
T Consensus 266 ~~~~~~g--~p~aip~-----------------------~~~~a~~a~~~~~~~~---~n~vllvsnln~~~VT~d~Lft 317 (492)
T KOG1190|consen 266 SVPAVHG--APLAIPS-----------------------GAAGANAADGKIESPS---ANVVLLVSNLNEEAVTPDVLFT 317 (492)
T ss_pred ccccccC--CcccCCc-----------------------cchhhcccccccccCC---CceEEEEecCchhccchhHHHH
Confidence 0000000 0000000 00000000 0000110 257899999975 589999999
Q ss_pred HhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCCcCC
Q 013926 368 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDNKQN 431 (434)
Q Consensus 368 ~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~~~~~ 431 (434)
+|+.||+|.+|+|+.++.+ -|.|+|.+...|+.|+..|+|.++.|++|+|.++|.....
T Consensus 318 lFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 318 LFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred HHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 9999999999999988654 5999999999999999999999999999999999976543
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.3e-28 Score=221.32 Aligned_cols=173 Identities=29% Similarity=0.579 Sum_probs=158.3
Q ss_pred CCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEe
Q 013926 100 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 178 (434)
Q Consensus 100 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~ 178 (434)
...++||+-+|+.|+|.||+++|++||.|.+|.+++|+ ++.++|+|||.|.+.++|.+|+..|++...+.|...++.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 35689999999999999999999999999999999998 78899999999999999999999999998899999999999
Q ss_pred eccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCC
Q 013926 179 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 258 (434)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 258 (434)
+|+.+.++.
T Consensus 113 ~Ad~E~er~----------------------------------------------------------------------- 121 (510)
T KOG0144|consen 113 YADGERERI----------------------------------------------------------------------- 121 (510)
T ss_pred ccchhhhcc-----------------------------------------------------------------------
Confidence 998775431
Q ss_pred CCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 259 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 338 (434)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (434)
T Consensus 122 -------------------------------------------------------------------------------- 121 (510)
T KOG0144|consen 122 -------------------------------------------------------------------------------- 121 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCc-eeCC
Q 013926 339 SGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC-QLGG 417 (434)
Q Consensus 339 ~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~l~g 417 (434)
...+.|||+-|+..+||.|++++|++||.|.+|.|+++. .+.++|||||.|.+.|-|..|+++|||. .++|
T Consensus 122 -------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeG 193 (510)
T KOG0144|consen 122 -------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEG 193 (510)
T ss_pred -------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeecc
Confidence 134579999999999999999999999999999999995 8999999999999999999999999986 4566
Q ss_pred --eEEEEEEecCCcCC
Q 013926 418 --KKLKVQLKRDNKQN 431 (434)
Q Consensus 418 --~~i~v~~a~~~~~~ 431 (434)
.+|.|+||..++++
T Consensus 194 cs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 194 CSQPLVVKFADTQKDK 209 (510)
T ss_pred CCCceEEEecccCCCc
Confidence 58999999998854
No 24
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.96 E-value=6.3e-28 Score=230.05 Aligned_cols=258 Identities=24% Similarity=0.384 Sum_probs=201.4
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCcee
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 89 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~ 89 (434)
.+...+.|+|+|||..+..++|.++|..||.|..+.+. .. |. -|+|.|.+..+|+.|.+.+....+.. .++.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp-~~--G~--~aiv~fl~p~eAr~Afrklaysr~k~---~ply 452 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP-PG--GT--GAIVEFLNPLEARKAFRKLAYSRFKS---APLY 452 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC-cc--cc--eeeeeecCccchHHHHHHhchhhhcc---Cccc
Confidence 45566889999999999999999999999999998543 21 11 69999999999999999987543211 1111
Q ss_pred eeccC-------------------c-----cc---------------------------ccCCCeEEEeCCCCCCcHHHH
Q 013926 90 VKYAD-------------------G-----EL---------------------------ERLEHKLFIGMLPKNVSEAEV 118 (434)
Q Consensus 90 ~~~~~-------------------~-----~~---------------------------~~~~~~v~v~nlp~~~~~~~l 118 (434)
+.|+. . .. ....++|||+||+++++.++|
T Consensus 453 le~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l 532 (725)
T KOG0110|consen 453 LEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDL 532 (725)
T ss_pred cccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHH
Confidence 11110 0 00 000234999999999999999
Q ss_pred HHhhhccCCeeEEEEccCCCCC----cceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeeccChHHHHHHHHHHH
Q 013926 119 SALFSIYGTIKDLQILRGSQQT----SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKA 194 (434)
Q Consensus 119 ~~~f~~~G~i~~i~~~~~~~~~----~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~~~~~~~~~~~~~~ 194 (434)
...|+..|.|..+.|.+..++. +.|||||+|.+.++|+.|+..|+|.. ++|+ .|.|+++.....
T Consensus 533 ~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtv-ldGH--~l~lk~S~~k~~--------- 600 (725)
T KOG0110|consen 533 EDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTV-LDGH--KLELKISENKPA--------- 600 (725)
T ss_pred HHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCce-ecCc--eEEEEeccCccc---------
Confidence 9999999999999887766442 55999999999999999999999976 8998 466666641100
Q ss_pred hhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCCCCCCcCCCCCCCCCC
Q 013926 195 QSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNM 274 (434)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (434)
+.
T Consensus 601 -----------------------~~------------------------------------------------------- 602 (725)
T KOG0110|consen 601 -----------------------ST------------------------------------------------------- 602 (725)
T ss_pred -----------------------cc-------------------------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEc
Q 013926 275 GPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIY 354 (434)
Q Consensus 275 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~ 354 (434)
..........++.|.|+
T Consensus 603 ---------------------------------------------------------------~gK~~~~kk~~tKIlVR 619 (725)
T KOG0110|consen 603 ---------------------------------------------------------------VGKKKSKKKKGTKILVR 619 (725)
T ss_pred ---------------------------------------------------------------cccccccccccceeeee
Confidence 00000011235679999
Q ss_pred CCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 013926 355 HIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 428 (434)
Q Consensus 355 nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~~ 428 (434)
|||+..+..+++++|+.||.|.+|+|+.....+.++|||||.|-++.+|.+|+.+|...+|.||+|.+.||++.
T Consensus 620 NipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 620 NIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred ccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 99999999999999999999999999987567788999999999999999999999999999999999999875
No 25
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=2.1e-27 Score=227.35 Aligned_cols=167 Identities=26% Similarity=0.576 Sum_probs=147.9
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEee
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 179 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~ 179 (434)
..+|||+|||.++++++|+++|+.||+|..|++++++ +|+++|||||+|.+.++|.+|++.|++.. +.|+ .|.|.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~-l~g~--~i~v~~ 79 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLR-LQNK--TIKVSY 79 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEE-ECCe--eEEEEe
Confidence 4689999999999999999999999999999999886 78899999999999999999999999976 6666 577877
Q ss_pred ccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCC
Q 013926 180 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 259 (434)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 259 (434)
+.+..
T Consensus 80 a~~~~--------------------------------------------------------------------------- 84 (352)
T TIGR01661 80 ARPSS--------------------------------------------------------------------------- 84 (352)
T ss_pred ecccc---------------------------------------------------------------------------
Confidence 64320
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 260 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 339 (434)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (434)
T Consensus 85 -------------------------------------------------------------------------------- 84 (352)
T TIGR01661 85 -------------------------------------------------------------------------------- 84 (352)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC--
Q 013926 340 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG-- 417 (434)
Q Consensus 340 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g-- 417 (434)
.....++|||+|||..+++++|+++|+.||.|..++++.+..++.++|||||+|.+.++|++|++.|||..+.|
T Consensus 85 ----~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~ 160 (352)
T TIGR01661 85 ----DSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCT 160 (352)
T ss_pred ----cccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCc
Confidence 00023579999999999999999999999999999999998889999999999999999999999999999988
Q ss_pred eEEEEEEecCCc
Q 013926 418 KKLKVQLKRDNK 429 (434)
Q Consensus 418 ~~i~v~~a~~~~ 429 (434)
++|+|.+++...
T Consensus 161 ~~i~v~~a~~~~ 172 (352)
T TIGR01661 161 EPITVKFANNPS 172 (352)
T ss_pred eeEEEEECCCCC
Confidence 678898887554
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=6.5e-27 Score=198.26 Aligned_cols=160 Identities=23% Similarity=0.509 Sum_probs=145.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeec
Q 013926 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 92 (434)
Q Consensus 14 ~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~ 92 (434)
..-|||+.|.++++.++|++.|..||.|.++++++|..|.+++ |+||.|.+.++|++||..|||.- +++ +.|+-.|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW-lG~--R~IRTNW 138 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW-LGR--RTIRTNW 138 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee-ecc--ceeeccc
Confidence 5679999999999999999999999999999999999999999 99999999999999999999986 554 7888888
Q ss_pred cCcccccC-----------------CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHH
Q 013926 93 ADGELERL-----------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQA 155 (434)
Q Consensus 93 ~~~~~~~~-----------------~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a 155 (434)
+..+..+. .++||++|++..+++++|++.|+.||.|.+|+++++ +||+||+|++.|+|
T Consensus 139 ATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 139 ATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAA 213 (321)
T ss_pred cccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhH
Confidence 87555322 578999999999999999999999999999999998 88999999999999
Q ss_pred HHHHHHhcCCccCCCCcceEEEeeccChH
Q 013926 156 LAALEAINGKHKMEGSSVPLVVKWADTEK 184 (434)
Q Consensus 156 ~~a~~~l~~~~~~~g~~~~i~v~~a~~~~ 184 (434)
..||..+|+.. +.|. .++|.|-....
T Consensus 214 ahAIv~mNnte-i~G~--~VkCsWGKe~~ 239 (321)
T KOG0148|consen 214 AHAIVQMNNTE-IGGQ--LVRCSWGKEGD 239 (321)
T ss_pred HHHHHHhcCce-eCce--EEEEeccccCC
Confidence 99999999988 7777 57899986653
No 27
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.95 E-value=3.5e-25 Score=199.35 Aligned_cols=150 Identities=19% Similarity=0.379 Sum_probs=126.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHh-ccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFK-EFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~-~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
..+.+||.|||++..++||+++|. +.|.|+-|.++.|.. ++.+ ||.|+|+++|.+++|++.||.-. +.| +++.+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~-~~G--R~l~v 118 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYE-VNG--RELVV 118 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhcc-ccC--ceEEE
Confidence 346799999999999999999997 578999999999976 5556 99999999999999999997543 555 55555
Q ss_pred eccCccccc-----------------------------------------------------------------------
Q 013926 91 KYADGELER----------------------------------------------------------------------- 99 (434)
Q Consensus 91 ~~~~~~~~~----------------------------------------------------------------------- 99 (434)
+-....+..
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfg 198 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFG 198 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhccc
Confidence 443321100
Q ss_pred ---------------CCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 013926 100 ---------------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 164 (434)
Q Consensus 100 ---------------~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~ 164 (434)
...++||.||.+.+....|++.|.-.|.|+.|.+-.|+.|.++|++.++|+.+-.|..||..+++
T Consensus 199 l~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 199 LSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred chhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhcc
Confidence 02469999999999999999999999999999999999999999999999999999999999997
Q ss_pred Cc
Q 013926 165 KH 166 (434)
Q Consensus 165 ~~ 166 (434)
.-
T Consensus 279 ~g 280 (608)
T KOG4212|consen 279 QG 280 (608)
T ss_pred CC
Confidence 54
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=1.5e-26 Score=229.00 Aligned_cols=178 Identities=29% Similarity=0.528 Sum_probs=147.2
Q ss_pred cCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEE
Q 013926 99 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 177 (434)
Q Consensus 99 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v 177 (434)
...++|||+|||..+++++|+++|+.||.|..|.++.+. ++.++|+|||+|.+.++|.+|+. |++.. +.|. +|.|
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~-~~g~--~i~v 162 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQM-LLGR--PIIV 162 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCE-ECCe--eeEE
Confidence 346789999999999999999999999999999999886 67899999999999999999996 88876 5666 4666
Q ss_pred eeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCC
Q 013926 178 KWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 257 (434)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 257 (434)
.++.......... ..
T Consensus 163 ~~~~~~~~~~~~~-------~~---------------------------------------------------------- 177 (457)
T TIGR01622 163 QSSQAEKNRAAKA-------AT---------------------------------------------------------- 177 (457)
T ss_pred eecchhhhhhhhc-------cc----------------------------------------------------------
Confidence 5543221110000 00
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 258 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 337 (434)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (434)
T Consensus 178 -------------------------------------------------------------------------------- 177 (457)
T TIGR01622 178 -------------------------------------------------------------------------------- 177 (457)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 013926 338 GSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 417 (434)
Q Consensus 338 ~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g 417 (434)
......+..++|||+|||..+|+++|+++|+.||.|.+|.|+.+..+|+++|||||+|.+.++|.+|+..|||..|.|
T Consensus 178 --~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g 255 (457)
T TIGR01622 178 --HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAG 255 (457)
T ss_pred --ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECC
Confidence 000001124789999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred eEEEEEEecC
Q 013926 418 KKLKVQLKRD 427 (434)
Q Consensus 418 ~~i~v~~a~~ 427 (434)
+.|+|.+++.
T Consensus 256 ~~i~v~~a~~ 265 (457)
T TIGR01622 256 RPIKVGYAQD 265 (457)
T ss_pred EEEEEEEccC
Confidence 9999999874
No 29
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.94 E-value=2.9e-26 Score=213.10 Aligned_cols=168 Identities=27% Similarity=0.446 Sum_probs=142.1
Q ss_pred ccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCC
Q 013926 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGA 84 (434)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~ 84 (434)
....++.+.+++|+--|+-..++.||.+||+.+|+|..|.++.|+.++.++ .|||+|.+.+++-.|| .|.|+. +.|
T Consensus 171 ~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqr-llg- 247 (549)
T KOG0147|consen 171 ILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQR-LLG- 247 (549)
T ss_pred cCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCc-ccC-
Confidence 345567788999999999999999999999999999999999999999999 9999999999999999 556665 444
Q ss_pred CCceeeeccCcccccC---------------CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEE
Q 013926 85 SSPLQVKYADGELERL---------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLK 148 (434)
Q Consensus 85 ~~~i~~~~~~~~~~~~---------------~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~ 148 (434)
.+|.++.....+... -.+|||+||-.+++++.|+..|+.||.|+.|.+.+|. +|.++||+||+
T Consensus 248 -~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~ 326 (549)
T KOG0147|consen 248 -VPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFIT 326 (549)
T ss_pred -ceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEE
Confidence 666665554322111 1238999999999999999999999999999999998 99999999999
Q ss_pred eCCHHHHHHHHHHhcCCccCCCCcceEEEeec
Q 013926 149 YETKEQALAALEAINGKHKMEGSSVPLVVKWA 180 (434)
Q Consensus 149 f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a 180 (434)
|.+.++|++|++.||| ..+-|+. |+|...
T Consensus 327 f~~~~~ar~a~e~lng-felAGr~--ikV~~v 355 (549)
T KOG0147|consen 327 FVNKEDARKALEQLNG-FELAGRL--IKVSVV 355 (549)
T ss_pred EecHHHHHHHHHHhcc-ceecCce--EEEEEe
Confidence 9999999999999999 5688885 444433
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.93 E-value=6.3e-25 Score=214.89 Aligned_cols=198 Identities=23% Similarity=0.320 Sum_probs=153.0
Q ss_pred CHHHHHHHHHHhccCccCCCCC-----CceeeeccCcccccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCC
Q 013926 64 SRQEADKAVNACHNKKTLPGAS-----SPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQ 138 (434)
Q Consensus 64 ~~~~A~~al~~~~~~~~~~g~~-----~~i~~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~ 138 (434)
-.++|.+||..+++..+..-.. .+..+ | +.......++|||+|||.++++++|+++|+.||.|..++|++|.+
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~-~-~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~s 95 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPG-W-SGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFS 95 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCc-c-cCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCC
Confidence 4678899998877654311100 11111 1 122233468999999999999999999999999999999999988
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCC
Q 013926 139 QTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMG 218 (434)
Q Consensus 139 ~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (434)
+.++|||||+|.+.++|++||+.||+..+..|+. |.+.++.
T Consensus 96 G~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~--l~V~~S~------------------------------------- 136 (578)
T TIGR01648 96 GQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRL--LGVCISV------------------------------------- 136 (578)
T ss_pred CCccceEEEEeCCHHHHHHHHHHcCCCeecCCcc--ccccccc-------------------------------------
Confidence 9999999999999999999999999977544542 2232110
Q ss_pred CCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 219 YAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQ 298 (434)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 298 (434)
T Consensus 137 -------------------------------------------------------------------------------- 136 (578)
T TIGR01648 137 -------------------------------------------------------------------------------- 136 (578)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCC-eEE
Q 013926 299 YPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGR-VLS 377 (434)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~-v~~ 377 (434)
..++|||+|||.++++++|.+.|+.++. +++
T Consensus 137 ------------------------------------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~ 168 (578)
T TIGR01648 137 ------------------------------------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVD 168 (578)
T ss_pred ------------------------------------------------cCceeEeecCCcchhhHHHHHHhhcccCCceE
Confidence 2368999999999999999999999864 455
Q ss_pred EEEEe-cCCCCCeeeEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEEEecCCcC
Q 013926 378 AKVFV-DKATGVSKCFGFVSYESPASAQNAIAMMNG--CQLGGKKLKVQLKRDNKQ 430 (434)
Q Consensus 378 v~i~~-~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~l~g~~i~v~~a~~~~~ 430 (434)
+.+.. ....++++|||||+|.+.++|.+|++.|+. ..+.|+.|.|.|+..+.+
T Consensus 169 vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~ 224 (578)
T TIGR01648 169 VIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEE 224 (578)
T ss_pred EEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccc
Confidence 54432 234567899999999999999999998863 468999999999987654
No 31
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=6e-26 Score=181.55 Aligned_cols=171 Identities=30% Similarity=0.471 Sum_probs=149.4
Q ss_pred cCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEE
Q 013926 99 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 177 (434)
Q Consensus 99 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v 177 (434)
+...+|||+||+..++++.|+++|-+.|+|..++++++. +...+|||||+|.++|+|+.|++-||... +.|+ +|++
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~Vk-LYgr--pIrv 83 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVK-LYGR--PIRV 83 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHH-hcCc--eeEE
Confidence 346799999999999999999999999999999999998 55689999999999999999999999766 5555 6888
Q ss_pred eeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCC
Q 013926 178 KWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 257 (434)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 257 (434)
..+....
T Consensus 84 ~kas~~~------------------------------------------------------------------------- 90 (203)
T KOG0131|consen 84 NKASAHQ------------------------------------------------------------------------- 90 (203)
T ss_pred Eeccccc-------------------------------------------------------------------------
Confidence 8774210
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 258 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 337 (434)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (434)
T Consensus 91 -------------------------------------------------------------------------------- 90 (203)
T KOG0131|consen 91 -------------------------------------------------------------------------------- 90 (203)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEE-EEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC
Q 013926 338 GSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSA-KVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 416 (434)
Q Consensus 338 ~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v-~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~ 416 (434)
.+...+.++||+||...+++.-|.+.|+.||.+.+. +|+++..+|.++|||||.|++.|.+.+|+.++||..++
T Consensus 91 -----~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~ 165 (203)
T KOG0131|consen 91 -----KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLC 165 (203)
T ss_pred -----ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhc
Confidence 011133679999999999999999999999999775 89999989999999999999999999999999999999
Q ss_pred CeEEEEEEecCCcC
Q 013926 417 GKKLKVQLKRDNKQ 430 (434)
Q Consensus 417 g~~i~v~~a~~~~~ 430 (434)
+++|+|+++..+..
T Consensus 166 nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 166 NRPITVSYAFKKDT 179 (203)
T ss_pred CCceEEEEEEecCC
Confidence 99999999876654
No 32
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.9e-25 Score=188.10 Aligned_cols=170 Identities=26% Similarity=0.563 Sum_probs=151.9
Q ss_pred cCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEE
Q 013926 99 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 177 (434)
Q Consensus 99 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v 177 (434)
+..+.|+|.-||..+|++||+.+|...|+|+.+++++|+ +|.+.||+||.|-+++||++|+..|||.. +... .|+|
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLr-LQ~K--TIKV 115 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLR-LQNK--TIKV 115 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhccee-eccc--eEEE
Confidence 335789999999999999999999999999999999998 89999999999999999999999999976 4433 5899
Q ss_pred eeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCC
Q 013926 178 KWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 257 (434)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 257 (434)
.+|.+...
T Consensus 116 SyARPSs~------------------------------------------------------------------------ 123 (360)
T KOG0145|consen 116 SYARPSSD------------------------------------------------------------------------ 123 (360)
T ss_pred EeccCChh------------------------------------------------------------------------
Confidence 98865421
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 258 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 337 (434)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (434)
T Consensus 124 -------------------------------------------------------------------------------- 123 (360)
T KOG0145|consen 124 -------------------------------------------------------------------------------- 123 (360)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 013926 338 GSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 417 (434)
Q Consensus 338 ~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g 417 (434)
...+.+|||++||..+|..||.++|+.||.|+--+|+.|.-+|.++|.|||.|.-+++|+.|++.|||..=.|
T Consensus 124 -------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g 196 (360)
T KOG0145|consen 124 -------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 196 (360)
T ss_pred -------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCC
Confidence 1244679999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred --eEEEEEEecCCcC
Q 013926 418 --KKLKVQLKRDNKQ 430 (434)
Q Consensus 418 --~~i~v~~a~~~~~ 430 (434)
.+|.|+||.+...
T Consensus 197 ~tepItVKFannPsq 211 (360)
T KOG0145|consen 197 CTEPITVKFANNPSQ 211 (360)
T ss_pred CCCCeEEEecCCccc
Confidence 4899999987643
No 33
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.92 E-value=6.9e-23 Score=188.25 Aligned_cols=161 Identities=17% Similarity=0.272 Sum_probs=123.3
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
+......|.+++|||+||++||++||+.++ |+++.+.+. +++.. -|||+|.+++++++|+++ ++..+.. +-|
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk--dR~~mg~--RYI 78 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK--DRESMGH--RYI 78 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHh--hHHHhCC--ceE
Confidence 456677899999999999999999999996 788665554 34444 999999999999999998 5555655 334
Q ss_pred eeeccCcc------------cccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeE-EEEccCCCCCcceEEEEEeCCHHHH
Q 013926 89 QVKYADGE------------LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD-LQILRGSQQTSKGCAFLKYETKEQA 155 (434)
Q Consensus 89 ~~~~~~~~------------~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~-i~~~~~~~~~~~g~a~V~f~~~~~a 155 (434)
.|-..... .......|.+++||+.|+++||.++|+-.-.+.. |.++.+..+++.|.|||+|++.+.|
T Consensus 79 EVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 79 EVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESA 158 (510)
T ss_pred EEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHH
Confidence 43322111 1123568999999999999999999997765554 6788888888999999999999999
Q ss_pred HHHHHHhcCCccCCCCcceEEEeecc
Q 013926 156 LAALEAINGKHKMEGSSVPLVVKWAD 181 (434)
Q Consensus 156 ~~a~~~l~~~~~~~g~~~~i~v~~a~ 181 (434)
+.|+..... .|+.+ .|.|-.+.
T Consensus 159 e~Al~rhre--~iGhR--YIEvF~Ss 180 (510)
T KOG4211|consen 159 EIALGRHRE--NIGHR--YIEVFRSS 180 (510)
T ss_pred HHHHHHHHH--hhccc--eEEeehhH
Confidence 999987554 26655 34554443
No 34
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=1.4e-23 Score=210.85 Aligned_cols=83 Identities=29% Similarity=0.518 Sum_probs=78.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|||+|||..+|+++|+++|+.||.|..+.|+++..+|.++|||||+|.+.++|..|+..|||..|+|+.|+|.+|.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 44789999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred CCc
Q 013926 427 DNK 429 (434)
Q Consensus 427 ~~~ 429 (434)
...
T Consensus 374 ~~~ 376 (509)
T TIGR01642 374 VGA 376 (509)
T ss_pred cCC
Confidence 543
No 35
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.92 E-value=6e-22 Score=175.26 Aligned_cols=331 Identities=19% Similarity=0.250 Sum_probs=207.9
Q ss_pred cccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCcc-CCC
Q 013926 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKT-LPG 83 (434)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~-~~g 83 (434)
..+-.+..++..|.|++|=..++|.||.+.++.||+|.-+.++..+. .|.|+|++.+.|+.++...-...+ +.|
T Consensus 22 ~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r-----~alvefedi~~akn~Vnfaa~n~i~i~g 96 (494)
T KOG1456|consen 22 NADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR-----QALVEFEDIEGAKNCVNFAADNQIYIAG 96 (494)
T ss_pred CCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc-----eeeeeeccccchhhheehhccCcccccC
Confidence 34455677889999999999999999999999999998887766544 899999999999999986443332 222
Q ss_pred CCCcee------eeccCcccccCCCeEEEe--CCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHH
Q 013926 84 ASSPLQ------VKYADGELERLEHKLFIG--MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQA 155 (434)
Q Consensus 84 ~~~~i~------~~~~~~~~~~~~~~v~v~--nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a 155 (434)
..--+. +.....+.....+.|.++ |--+.+|.+.|+.++-..|.|..|.|++. +|. .|.|+|++.+.|
T Consensus 97 q~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngV---QAmVEFdsv~~A 172 (494)
T KOG1456|consen 97 QQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGV---QAMVEFDSVEVA 172 (494)
T ss_pred chhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cce---eeEEeechhHHH
Confidence 111111 111112222223445555 44567999999999999999999999876 332 799999999999
Q ss_pred HHHHHHhcCCccCCCCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcC
Q 013926 156 LAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYG 235 (434)
Q Consensus 156 ~~a~~~l~~~~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (434)
++|...|||..|+.|+ +.|++.+|.+...... ......|+--.+...+....| ..++..+.++...+++
T Consensus 173 qrAk~alNGADIYsGC-CTLKIeyAkP~rlnV~---------knd~DtwDyTlp~~~~~~~~g-~~~~~r~~~p~~~~~~ 241 (494)
T KOG1456|consen 173 QRAKAALNGADIYSGC-CTLKIEYAKPTRLNVQ---------KNDKDTWDYTLPDLRGPYDPG-RNHYDRQRQPAPLGYH 241 (494)
T ss_pred HHHHhhcccccccccc-eeEEEEecCcceeeee---------ecCCccccccCCCCCCCCCCC-CCCCccccCCCccCCC
Confidence 9999999999999888 6799999977632111 111111111111110000000 0000001111110000
Q ss_pred cccCCCCCCCCCCCCcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC
Q 013926 236 LMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYP-GGMLGHRPLN 314 (434)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 314 (434)
. .+..+.+..+....-. .+....|..+. +...+
T Consensus 242 p------------------------ss~~G~h~~y~sg~~~-----------------~p~~~~P~r~~~~~~~~----- 275 (494)
T KOG1456|consen 242 P------------------------SSRGGGHSGYYSGDRH-----------------GPPHPPPSRYRDGYRDG----- 275 (494)
T ss_pred h------------------------hhcCCCCCCCcccccC-----------------CCCCCCCCCCccccccC-----
Confidence 0 0000000000000000 00000000000 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEE
Q 013926 315 NSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFG 393 (434)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~-~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~a 393 (434)
...+ .+.-..++++++|.+|... ++.+.|..+|+.||+|.+|++++.+ .|.|
T Consensus 276 ------------~g~a----------~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gta 328 (494)
T KOG1456|consen 276 ------------RGYA----------SPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTA 328 (494)
T ss_pred ------------CCCC----------CCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----ccee
Confidence 0000 0012336789999999875 7899999999999999999999885 4589
Q ss_pred EEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 013926 394 FVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 428 (434)
Q Consensus 394 fV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~~ 428 (434)
+|++.+..+.++|+..||+..+.|.+|.|.+++-.
T Consensus 329 mVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 329 MVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred EEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 99999999999999999999999999999988754
No 36
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=7.6e-22 Score=178.83 Aligned_cols=168 Identities=24% Similarity=0.410 Sum_probs=140.2
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCc-eeEEEEeecCC-CCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKT-TRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~-v~~~~~~~~~~-~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
...++|||+|||...++++|++.|++.++ |++|.+..... ..+++ ||||+|.+...|..|-++|-... +.-....+
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~-~klwgn~~ 240 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGK-IKLWGNAI 240 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCc-eeecCCcc
Confidence 45799999999999999999999999875 77788877663 34455 99999999999999988754322 22233678
Q ss_pred eeeccCcccccC------CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 013926 89 QVKYADGELERL------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 162 (434)
Q Consensus 89 ~~~~~~~~~~~~------~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l 162 (434)
.|.|++++.+.. .+.|||+||+.++|+|.|+++|..||.|+.|+.++| ||||.|.+.++|.+||+.+
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ 313 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKET 313 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHh
Confidence 899998776543 467999999999999999999999999999999876 9999999999999999999
Q ss_pred cCCccCCCCcceEEEeeccChHHHHHHH
Q 013926 163 NGKHKMEGSSVPLVVKWADTEKERQARR 190 (434)
Q Consensus 163 ~~~~~~~g~~~~i~v~~a~~~~~~~~~~ 190 (434)
|++. ++|. .|.|..|.+..+++..+
T Consensus 314 ngke-ldG~--~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 314 NGKE-LDGS--PIEVTLAKPVDKKKKER 338 (506)
T ss_pred cCce-ecCc--eEEEEecCChhhhccch
Confidence 9988 8888 57888888877665554
No 37
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.91 E-value=9.7e-24 Score=168.93 Aligned_cols=169 Identities=26% Similarity=0.435 Sum_probs=144.7
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
+.....+|||+||+.-++++.|.++|-+.|+|.++++.+++.+...+ |||++|.++|+|+-|++.||..+ +.| ++|
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~Vk-LYg--rpI 81 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVK-LYG--RPI 81 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHH-hcC--cee
Confidence 34567899999999999999999999999999999999999998777 99999999999999999999555 555 788
Q ss_pred eeeccCccc--ccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEE-EEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcC
Q 013926 89 QVKYADGEL--ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL-QILRGS-QQTSKGCAFLKYETKEQALAALEAING 164 (434)
Q Consensus 89 ~~~~~~~~~--~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i-~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~ 164 (434)
++..+.... .....++||+||.+++++..|++.|+.||.+... +++++. +|.++|++||.|.+.|.+.+|++.+|+
T Consensus 82 rv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ng 161 (203)
T KOG0131|consen 82 RVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNG 161 (203)
T ss_pred EEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhcc
Confidence 887766333 3346789999999999999999999999987654 677776 588999999999999999999999999
Q ss_pred CccCCCCcceEEEeeccChH
Q 013926 165 KHKMEGSSVPLVVKWADTEK 184 (434)
Q Consensus 165 ~~~~~g~~~~i~v~~a~~~~ 184 (434)
.. +..+ ++++.++..+.
T Consensus 162 q~-l~nr--~itv~ya~k~~ 178 (203)
T KOG0131|consen 162 QY-LCNR--PITVSYAFKKD 178 (203)
T ss_pred ch-hcCC--ceEEEEEEecC
Confidence 75 5544 57888776554
No 38
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.7e-23 Score=193.68 Aligned_cols=192 Identities=21% Similarity=0.371 Sum_probs=147.7
Q ss_pred CeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeec
Q 013926 102 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180 (434)
Q Consensus 102 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a 180 (434)
.+|||++||+.++.++|.++|+.+|+|..+.++.+. .+..+||+||+|.-.||+++|+...++.. ++|+. |.+..|
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~k-f~Gr~--l~v~~A 82 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSK-FEGRI--LNVDPA 82 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCc-cccee--cccccc
Confidence 689999999999999999999999999999999887 55789999999999999999999999876 88884 566655
Q ss_pred cChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCCC
Q 013926 181 DTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQG 260 (434)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (434)
..+.................
T Consensus 83 ~~R~r~e~~~~~e~~~veK~------------------------------------------------------------ 102 (678)
T KOG0127|consen 83 KKRARSEEVEKGENKAVEKP------------------------------------------------------------ 102 (678)
T ss_pred cccccchhcccccchhhhcc------------------------------------------------------------
Confidence 44321110000000000000
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 261 NAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSG 340 (434)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (434)
..+. .+.
T Consensus 103 -----------------------------------------------------------~~q~--------------~~~ 109 (678)
T KOG0127|consen 103 -----------------------------------------------------------IEQK--------------RPT 109 (678)
T ss_pred -----------------------------------------------------------cccC--------------Ccc
Confidence 0000 000
Q ss_pred CCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 013926 341 GQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 420 (434)
Q Consensus 341 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i 420 (434)
.....-+...|+|+|||+.+...+|..+|+.||.|..|.|++.+ .|+..|||||+|....+|..|++.+|+.+|+||+|
T Consensus 110 k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~V 188 (678)
T KOG0127|consen 110 KAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPV 188 (678)
T ss_pred hhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCcee
Confidence 00001124679999999999999999999999999999999776 56666999999999999999999999999999999
Q ss_pred EEEEecCCcC
Q 013926 421 KVQLKRDNKQ 430 (434)
Q Consensus 421 ~v~~a~~~~~ 430 (434)
-|.||-.+..
T Consensus 189 AVDWAV~Kd~ 198 (678)
T KOG0127|consen 189 AVDWAVDKDT 198 (678)
T ss_pred EEeeeccccc
Confidence 9999988754
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.88 E-value=9.2e-23 Score=174.90 Aligned_cols=152 Identities=27% Similarity=0.524 Sum_probs=133.8
Q ss_pred CeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeecc
Q 013926 102 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 181 (434)
Q Consensus 102 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~ 181 (434)
.+|||+|||.++++.+|+.+|++||+|.++.|+++ ||||..+++..++.||..|++.. ++|. .|.|+-+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYt-Lhg~--nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYT-LHGV--NINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccce-ecce--EEEEEecc
Confidence 36999999999999999999999999999999965 99999999999999999999987 6766 35555443
Q ss_pred ChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCCCC
Q 013926 182 TEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGN 261 (434)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (434)
.+
T Consensus 73 sK------------------------------------------------------------------------------ 74 (346)
T KOG0109|consen 73 SK------------------------------------------------------------------------------ 74 (346)
T ss_pred cc------------------------------------------------------------------------------
Confidence 22
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 262 AMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGG 341 (434)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (434)
T Consensus 75 -------------------------------------------------------------------------------- 74 (346)
T KOG0109|consen 75 -------------------------------------------------------------------------------- 74 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 013926 342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 421 (434)
Q Consensus 342 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~ 421 (434)
...+++|+|+||.+.++.+||++.|++||.|+.+.|.++ |+||.|...++|..|++.|++..|.|++|+
T Consensus 75 ---sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~ 143 (346)
T KOG0109|consen 75 ---SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMH 143 (346)
T ss_pred ---CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceee
Confidence 114467999999999999999999999999999999766 999999999999999999999999999999
Q ss_pred EEEecCCcCCC
Q 013926 422 VQLKRDNKQNK 432 (434)
Q Consensus 422 v~~a~~~~~~~ 432 (434)
|+++-++=..+
T Consensus 144 vq~stsrlrta 154 (346)
T KOG0109|consen 144 VQLSTSRLRTA 154 (346)
T ss_pred eeeeccccccC
Confidence 99987764433
No 40
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.88 E-value=1.5e-21 Score=186.75 Aligned_cols=80 Identities=30% Similarity=0.512 Sum_probs=72.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCC---CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT---GVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
++|||+||++++|.++|.++|...|.|.++.|...++. -.+.|||||+|++.++|++|++.|+|..|.|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 44999999999999999999999999999999876532 145699999999999999999999999999999999999
Q ss_pred cCC
Q 013926 426 RDN 428 (434)
Q Consensus 426 ~~~ 428 (434)
.++
T Consensus 596 ~~k 598 (725)
T KOG0110|consen 596 ENK 598 (725)
T ss_pred cCc
Confidence 843
No 41
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.86 E-value=5.8e-22 Score=170.01 Aligned_cols=146 Identities=26% Similarity=0.539 Sum_probs=130.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeeccC
Q 013926 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYAD 94 (434)
Q Consensus 15 ~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~~ 94 (434)
.+|||+|||..+++.+|+.+|.+||+|.+|.|+++ ||||-.++...|..||+.||+-+ +.| ..|.|..++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYt-Lhg--~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYT-LHG--VNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccce-ecc--eEEEEEecc
Confidence 47999999999999999999999999999999998 99999999999999999999977 666 666776665
Q ss_pred cccccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcce
Q 013926 95 GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVP 174 (434)
Q Consensus 95 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~ 174 (434)
.+ ...+.+|+|+|+.+.++.+||++.|++||+|.++.|+++ |+||.|+..++|..|+..|++.. +.|..
T Consensus 73 sK-sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~-~~gk~-- 141 (346)
T KOG0109|consen 73 SK-SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTE-FQGKR-- 141 (346)
T ss_pred cc-CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhcccccc-cccce--
Confidence 44 556789999999999999999999999999999999965 99999999999999999999987 78874
Q ss_pred EEEeecc
Q 013926 175 LVVKWAD 181 (434)
Q Consensus 175 i~v~~a~ 181 (434)
|.|....
T Consensus 142 m~vq~st 148 (346)
T KOG0109|consen 142 MHVQLST 148 (346)
T ss_pred eeeeeec
Confidence 5555443
No 42
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=2.7e-21 Score=170.61 Aligned_cols=176 Identities=23% Similarity=0.414 Sum_probs=147.3
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEee
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 179 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~ 179 (434)
-++|||+.+.+++.++.|+..|..||+|..|.+-.|+ +++.+|||||+|+-+|.|.-|++.+|+.. ++|++ |+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~m-lGGRN--iKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM-LGGRN--IKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcccc-ccCcc--ccccC
Confidence 3689999999999999999999999999999999998 88999999999999999999999999964 89885 45543
Q ss_pred ccChHH--HHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCC
Q 013926 180 ADTEKE--RQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 257 (434)
Q Consensus 180 a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 257 (434)
...... ..-...+...
T Consensus 190 PsNmpQAQpiID~vqeeA-------------------------------------------------------------- 207 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEA-------------------------------------------------------------- 207 (544)
T ss_pred CCCCcccchHHHHHHHHH--------------------------------------------------------------
Confidence 321100 0000000000
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 258 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 337 (434)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (434)
T Consensus 208 -------------------------------------------------------------------------------- 207 (544)
T KOG0124|consen 208 -------------------------------------------------------------------------------- 207 (544)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 013926 338 GSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 417 (434)
Q Consensus 338 ~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g 417 (434)
..=.+|||.-+..+.+++||+.+|+.||+|.+|.+.+++..+.++|||||+|.+..+-..|+..||-+.++|
T Consensus 208 --------k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGG 279 (544)
T KOG0124|consen 208 --------KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGG 279 (544)
T ss_pred --------HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhccc
Confidence 011469999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred eEEEEEEecCCc
Q 013926 418 KKLKVQLKRDNK 429 (434)
Q Consensus 418 ~~i~v~~a~~~~ 429 (434)
..|+|-.+-..+
T Consensus 280 QyLRVGk~vTPP 291 (544)
T KOG0124|consen 280 QYLRVGKCVTPP 291 (544)
T ss_pred ceEecccccCCC
Confidence 999997665443
No 43
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.83 E-value=1.8e-18 Score=155.33 Aligned_cols=276 Identities=20% Similarity=0.321 Sum_probs=194.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeee
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 91 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~ 91 (434)
.--++.|.|+-+-++.+-|..+|++||.|..|.-+.. ..+ .|.|+|.+.+.|+.|-..|+|+.++.|+ +.+++.
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngc-CtLrId 223 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGC-CTLRID 223 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec----ccchhhhhhccchhhHHHHHHhccCCcccCce-eEEEee
Confidence 3346779999999999999999999999998876653 344 8999999999999999999999987774 444443
Q ss_pred cc----------CcccccC------------------------------------------------------CCeEEEe
Q 013926 92 YA----------DGELERL------------------------------------------------------EHKLFIG 107 (434)
Q Consensus 92 ~~----------~~~~~~~------------------------------------------------------~~~v~v~ 107 (434)
++ ..+.++. ...|.|.
T Consensus 224 ~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvs 303 (492)
T KOG1190|consen 224 FSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVS 303 (492)
T ss_pred hhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEe
Confidence 33 2111110 1457778
Q ss_pred CCC-CCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeeccChHHH
Q 013926 108 MLP-KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKER 186 (434)
Q Consensus 108 nlp-~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~~~~~~ 186 (434)
||. ..+|.+.|..+|+-||.|..|+|+.++. -.|+|++.+...|+-|++.|+|.. +.|+ +|++.+.......
T Consensus 304 nln~~~VT~d~LftlFgvYGdVqRVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~-l~gk--~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 304 NLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHK-LYGK--KLRVTLSKHTNVQ 376 (492)
T ss_pred cCchhccchhHHHHHHhhhcceEEEEeeecCC----cceeeeecchhHHHHHHHHhhcce-ecCc--eEEEeeccCcccc
Confidence 885 4589999999999999999999988753 489999999999999999999987 5555 5777766543211
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCCCCCCcCC
Q 013926 187 QARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGA 266 (434)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (434)
..+ ...+ +. | +
T Consensus 377 lp~---------egq~--d~-----------g-----------------------------------------------l 387 (492)
T KOG1190|consen 377 LPR---------EGQE--DQ-----------G-----------------------------------------------L 387 (492)
T ss_pred CCC---------CCCc--cc-----------c-----------------------------------------------c
Confidence 000 0000 00 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCC
Q 013926 267 SPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGP 346 (434)
Q Consensus 267 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (434)
+-++. .++.. .++.+...+. ..-.+
T Consensus 388 T~dy~----------------~spLh-----rfkkpgsKN~----------------------------------~ni~P 412 (492)
T KOG1190|consen 388 TKDYG----------------NSPLH-----RFKKPGSKNY----------------------------------QNIFP 412 (492)
T ss_pred cccCC----------------CCchh-----hccCcccccc----------------------------------cccCC
Confidence 00000 00000 0000000000 00123
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEEEe
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK-KLKVQLK 425 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~-~i~v~~a 425 (434)
++.++.++|+|..+++|+|++.|..-|-..+..... ++.+-+|.+++.+.|+|..|+..+|.+.+++. .|||+|+
T Consensus 413 psatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 667899999999999999999999988776654432 22344899999999999999999999999765 9999999
Q ss_pred cCC
Q 013926 426 RDN 428 (434)
Q Consensus 426 ~~~ 428 (434)
|+.
T Consensus 489 ks~ 491 (492)
T KOG1190|consen 489 KST 491 (492)
T ss_pred ccc
Confidence 874
No 44
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=6.7e-20 Score=155.40 Aligned_cols=167 Identities=32% Similarity=0.539 Sum_probs=147.0
Q ss_pred ccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCC
Q 013926 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGA 84 (434)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~ 84 (434)
+++.+..+.++|||+-|...-.|+||+.+|..||.+++|.+.+... +.++ ||||+|.+.-+|+.||+.||+...+.|.
T Consensus 11 dsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGA 89 (371)
T KOG0146|consen 11 DSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGA 89 (371)
T ss_pred ccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCC
Confidence 3455556889999999999999999999999999999999999876 5555 9999999999999999999999999999
Q ss_pred CCceeeeccCcccccC----------------------------------------------------------------
Q 013926 85 SSPLQVKYADGELERL---------------------------------------------------------------- 100 (434)
Q Consensus 85 ~~~i~~~~~~~~~~~~---------------------------------------------------------------- 100 (434)
...+.|++++.++++.
T Consensus 90 SSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~ 169 (371)
T KOG0146|consen 90 SSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAAL 169 (371)
T ss_pred ccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHH
Confidence 9999999998665320
Q ss_pred --------------------------------------------------------------------------------
Q 013926 101 -------------------------------------------------------------------------------- 100 (434)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (434)
T Consensus 170 ~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g 249 (371)
T KOG0146|consen 170 NANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAG 249 (371)
T ss_pred hhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhh
Confidence
Q ss_pred -----------------------------------CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceE
Q 013926 101 -----------------------------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGC 144 (434)
Q Consensus 101 -----------------------------------~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~ 144 (434)
.++|||..||-+..+.||..+|-.||.|...+++-|. +..++.|
T Consensus 250 ~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCF 329 (371)
T KOG0146|consen 250 VQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCF 329 (371)
T ss_pred HHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccce
Confidence 1469999999999999999999999999998888776 7789999
Q ss_pred EEEEeCCHHHHHHHHHHhcCCccCCCCcce
Q 013926 145 AFLKYETKEQALAALEAINGKHKMEGSSVP 174 (434)
Q Consensus 145 a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~ 174 (434)
+||.|++...++.||..+||-. |+-+.++
T Consensus 330 GFVSfDNp~SaQaAIqAMNGFQ-IGMKRLK 358 (371)
T KOG0146|consen 330 GFVSFDNPASAQAAIQAMNGFQ-IGMKRLK 358 (371)
T ss_pred eeEecCCchhHHHHHHHhcchh-hhhhhhh
Confidence 9999999999999999999966 5555333
No 45
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=6e-19 Score=144.06 Aligned_cols=84 Identities=37% Similarity=0.607 Sum_probs=80.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
.+++|||+|||.++|+++|+++|+.||.|.+++|+.++.+++++|||||+|.+.++|++|++.||+..|+|++|+|++++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcC
Q 013926 427 DNKQ 430 (434)
Q Consensus 427 ~~~~ 430 (434)
.+..
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 7764
No 46
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.79 E-value=4.8e-19 Score=160.11 Aligned_cols=170 Identities=24% Similarity=0.412 Sum_probs=140.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeee
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 91 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~ 91 (434)
+.++|||++|+|+++++.|++.|.+||.|.+|.+++++.+++++ |+||+|.+.+....+|..- ...+.++.......
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~--~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNAR--THKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccc--ccccCCccccceec
Confidence 88999999999999999999999999999999999999999999 9999999999999999873 33466744444444
Q ss_pred ccCcccccC-----CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCC
Q 013926 92 YADGELERL-----EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGK 165 (434)
Q Consensus 92 ~~~~~~~~~-----~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~ 165 (434)
.+....... .++|||++||.++++++++++|++||.|..+.++.|. ..+++|++||.|.+++.+.+++.. ..
T Consensus 83 v~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~--~f 160 (311)
T KOG4205|consen 83 VSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ--KF 160 (311)
T ss_pred cCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc--ce
Confidence 443322222 4589999999999999999999999999999888887 567899999999999999999743 22
Q ss_pred ccCCCCcceEEEeeccChHHHHH
Q 013926 166 HKMEGSSVPLVVKWADTEKERQA 188 (434)
Q Consensus 166 ~~~~g~~~~i~v~~a~~~~~~~~ 188 (434)
+-++++ .+.|+.|.++.....
T Consensus 161 ~~~~gk--~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 161 HDFNGK--KVEVKRAIPKEVMQS 181 (311)
T ss_pred eeecCc--eeeEeeccchhhccc
Confidence 335665 578898988765443
No 47
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.78 E-value=6.3e-19 Score=159.31 Aligned_cols=173 Identities=25% Similarity=0.433 Sum_probs=145.7
Q ss_pred CCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEe
Q 013926 100 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 178 (434)
Q Consensus 100 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~ 178 (434)
...++||++|+++++++.|++.|++||+|.++.++++. +++++|++||+|.+.+...+++.... +.++|+ .|.++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~--h~~dgr--~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNART--HKLDGR--SVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccc--cccCCc--cccce
Confidence 35789999999999999999999999999999999987 78899999999999999998885544 337777 45666
Q ss_pred eccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCC
Q 013926 179 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 258 (434)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 258 (434)
.|.+.......
T Consensus 81 ~av~r~~~~~~--------------------------------------------------------------------- 91 (311)
T KOG4205|consen 81 RAVSREDQTKV--------------------------------------------------------------------- 91 (311)
T ss_pred eccCccccccc---------------------------------------------------------------------
Confidence 66554211000
Q ss_pred CCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 259 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 338 (434)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (434)
T Consensus 92 -------------------------------------------------------------------------------- 91 (311)
T KOG4205|consen 92 -------------------------------------------------------------------------------- 91 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 013926 339 SGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK 418 (434)
Q Consensus 339 ~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~ 418 (434)
........|||++||.++++++|+++|.+||.|..+.++.|..+.+++|||||.|.+++...+++.. .-+.|.|+
T Consensus 92 ----~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk 166 (311)
T KOG4205|consen 92 ----GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGK 166 (311)
T ss_pred ----ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCc
Confidence 0000235799999999999999999999999999999999999999999999999999999999985 89999999
Q ss_pred EEEEEEecCCcC
Q 013926 419 KLKVQLKRDNKQ 430 (434)
Q Consensus 419 ~i~v~~a~~~~~ 430 (434)
.+.|..|-.+..
T Consensus 167 ~vevkrA~pk~~ 178 (311)
T KOG4205|consen 167 KVEVKRAIPKEV 178 (311)
T ss_pred eeeEeeccchhh
Confidence 999999987754
No 48
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.77 E-value=6.9e-19 Score=164.30 Aligned_cols=178 Identities=24% Similarity=0.520 Sum_probs=140.1
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEee
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 179 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~ 179 (434)
.++||+--+...++..+|+++|+.+|.|..|.++.|. .+.++|.+||+|-+.+....|+ .|.|+.++ |. +|.|..
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrll-g~--pv~vq~ 254 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLL-GV--PVIVQL 254 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCccc-Cc--eeEecc
Confidence 3567777777788899999999999999999999987 6779999999999999999998 68888744 43 566654
Q ss_pred ccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCC
Q 013926 180 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 259 (434)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 259 (434)
.... +...+ ........
T Consensus 255 sEae--knr~a-----~~s~a~~~-------------------------------------------------------- 271 (549)
T KOG0147|consen 255 SEAE--KNRAA-----NASPALQG-------------------------------------------------------- 271 (549)
T ss_pred cHHH--HHHHH-----hccccccc--------------------------------------------------------
Confidence 4332 22211 00000000
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 260 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 339 (434)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (434)
T Consensus 272 -------------------------------------------------------------------------------- 271 (549)
T KOG0147|consen 272 -------------------------------------------------------------------------------- 271 (549)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 013926 340 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 419 (434)
Q Consensus 340 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~ 419 (434)
..... +-..|||+||.+++++++|+..|+.||.|..|.++++..+|+++|||||+|.+.++|++|+..|||..|.|+.
T Consensus 272 -k~~~~-p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ 349 (549)
T KOG0147|consen 272 -KGFTG-PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRL 349 (549)
T ss_pred -ccccc-chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCce
Confidence 00001 1122999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEEEecC
Q 013926 420 LKVQLKRD 427 (434)
Q Consensus 420 i~v~~a~~ 427 (434)
|+|..-..
T Consensus 350 ikV~~v~~ 357 (549)
T KOG0147|consen 350 IKVSVVTE 357 (549)
T ss_pred EEEEEeee
Confidence 99886543
No 49
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.77 E-value=8.3e-18 Score=149.70 Aligned_cols=277 Identities=15% Similarity=0.186 Sum_probs=178.6
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEee-cCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCcee
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIK-DKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 89 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~-~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~ 89 (434)
..+..-+..++|||..+..+|-.||+..-.......++ +-...+++.|.|+|.+.|.-..|++. .+..+.++.+++.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR--hkhh~g~ryievY 134 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR--HKHHMGTRYIEVY 134 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh--hhhhccCCceeee
Confidence 34556678999999999999999998653222222222 22233344899999999999999987 4444555333332
Q ss_pred eeccCccc----------------c-cCCCeEEEeCCCCCCcHHHHHHhhhcc----CCeeEEEEccCCCCCcceEEEEE
Q 013926 90 VKYADGEL----------------E-RLEHKLFIGMLPKNVSEAEVSALFSIY----GTIKDLQILRGSQQTSKGCAFLK 148 (434)
Q Consensus 90 ~~~~~~~~----------------~-~~~~~v~v~nlp~~~~~~~l~~~f~~~----G~i~~i~~~~~~~~~~~g~a~V~ 148 (434)
.+..+. + ..--.|.+++||+++++.|+.++|... |..+.|.+++..+|+.+|-|||.
T Consensus 135 --ka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvl 212 (508)
T KOG1365|consen 135 --KATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVL 212 (508)
T ss_pred --ccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEE
Confidence 221110 0 012346678999999999999999643 24567888888899999999999
Q ss_pred eCCHHHHHHHHHHhcCCccCCCCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCc
Q 013926 149 YETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGY 228 (434)
Q Consensus 149 f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (434)
|..+++|+.|+.+-.. .++.+.+++ - -.+..+.+...... . .. +...+ .
T Consensus 213 fa~ee~aq~aL~khrq--~iGqRYIEl--F-RSTaaEvqqvlnr~-----~-s~------pLi~~----------~---- 261 (508)
T KOG1365|consen 213 FACEEDAQFALRKHRQ--NIGQRYIEL--F-RSTAAEVQQVLNRE-----V-SE------PLIPG----------L---- 261 (508)
T ss_pred ecCHHHHHHHHHHHHH--HHhHHHHHH--H-HHhHHHHHHHHHhh-----c-cc------cccCC----------C----
Confidence 9999999999976554 355543322 1 22222221111000 0 00 00000 0
Q ss_pred CCCCCcCcccCCCCCCCCCCCCcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 229 QASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 308 (434)
Q Consensus 229 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (434)
..+...+ +
T Consensus 262 ~sp~~p~----------------------------------------------------------------------~-- 269 (508)
T KOG1365|consen 262 TSPLLPG----------------------------------------------------------------------G-- 269 (508)
T ss_pred CCCCCCC----------------------------------------------------------------------C--
Confidence 0000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCC-eEE--EEEEecCC
Q 013926 309 GHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGR-VLS--AKVFVDKA 385 (434)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~-v~~--v~i~~~~~ 385 (434)
+...-+ ......+|.+++||+..+.|||.+||..|-. |.. |++..+ .
T Consensus 270 --------p~~~~p---------------------~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~ 319 (508)
T KOG1365|consen 270 --------PARLVP---------------------PTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-G 319 (508)
T ss_pred --------ccccCC---------------------CCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-C
Confidence 000000 0001346999999999999999999999874 333 788777 4
Q ss_pred CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 386 TGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 386 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
.|++.|.|||+|.++|+|..|...-|++..++|.|.|.=
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 899999999999999999999999888888899988753
No 50
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.77 E-value=2.7e-16 Score=149.93 Aligned_cols=160 Identities=11% Similarity=0.037 Sum_probs=116.1
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
.+.+.+-+++.++..++.|+++||... .|....+..++..+... -++|+|....++++|+.. +..++.. +.+++
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r--n~~~~~~--R~~q~ 383 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR--NPSDDVN--RPFQT 383 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc--Cchhhhh--cceee
Confidence 456778899999999999999999755 36777777777666534 999999999999999876 3222222 22222
Q ss_pred eccCc----------------------------------------ccccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeE
Q 013926 91 KYADG----------------------------------------ELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 130 (434)
Q Consensus 91 ~~~~~----------------------------------------~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~ 130 (434)
..... .......+|||..||..+++.++.++|...-.|++
T Consensus 384 ~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved 463 (944)
T KOG4307|consen 384 GPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVED 463 (944)
T ss_pred cCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhh
Confidence 21110 00112568999999999999999999998777776
Q ss_pred -EEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEee
Q 013926 131 -LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 179 (434)
Q Consensus 131 -i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~ 179 (434)
|.+-...+++.++.|||.|..++++.+|.... .++.++.+ -|.|.-
T Consensus 464 ~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~-~k~y~G~r--~irv~s 510 (944)
T KOG4307|consen 464 FIELTRLPTDLLRPAAFVAFIHPTAPLTASSVK-TKFYPGHR--IIRVDS 510 (944)
T ss_pred eeEeccCCcccccchhhheeccccccchhhhcc-cccccCce--EEEeec
Confidence 78877788888999999999988888887533 33434433 355543
No 51
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=7.5e-18 Score=135.31 Aligned_cols=145 Identities=18% Similarity=0.349 Sum_probs=122.1
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
...+++|||+|||.++-|.||.++|.+||.|..|.+...+. ...||||+|++..||+.||.--++.. +.| ..++|
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYd-ydg--~rLRV 77 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYD-YDG--CRLRV 77 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccc-cCc--ceEEE
Confidence 35689999999999999999999999999999998765432 22399999999999999999887765 666 66666
Q ss_pred eccCccc---------------------------ccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcce
Q 013926 91 KYADGEL---------------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKG 143 (434)
Q Consensus 91 ~~~~~~~---------------------------~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g 143 (434)
.++..-. ...+.+|.|++||...+|++|++...+.|.|....+.+| |
T Consensus 78 Efprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g 151 (241)
T KOG0105|consen 78 EFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------G 151 (241)
T ss_pred EeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------c
Confidence 6664221 223678999999999999999999999999998888776 4
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCc
Q 013926 144 CAFLKYETKEQALAALEAINGKH 166 (434)
Q Consensus 144 ~a~V~f~~~~~a~~a~~~l~~~~ 166 (434)
++.|+|.+.||.+.|+.+|+...
T Consensus 152 ~GvV~~~r~eDMkYAvr~ld~~~ 174 (241)
T KOG0105|consen 152 VGVVEYLRKEDMKYAVRKLDDQK 174 (241)
T ss_pred ceeeeeeehhhHHHHHHhhcccc
Confidence 78999999999999999998764
No 52
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=1.6e-17 Score=157.44 Aligned_cols=160 Identities=25% Similarity=0.435 Sum_probs=122.3
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhcc-----------C-ceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCc
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEF-----------A-LVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKK 79 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~-----------g-~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~ 79 (434)
...+.+||+++|+.++|+.+..+|..- | .+..|.+-..++ +||++|.+.++|..++... + .
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~n-----fa~ie~~s~~~at~~~~~~-~-~ 245 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKN-----FAFIEFRSISEATEAMALD-G-I 245 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccccc-----ceeEEecCCCchhhhhccc-c-h
Confidence 456889999999999999999999864 2 266666655444 9999999999999997652 2 2
Q ss_pred cCCCCCCceeeeccC------------------------cccccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEcc
Q 013926 80 TLPGASSPLQVKYAD------------------------GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR 135 (434)
Q Consensus 80 ~~~g~~~~i~~~~~~------------------------~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~ 135 (434)
++.| .++++.... ........+++|++||..+++.++++++..||.+....++.
T Consensus 246 ~f~g--~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~ 323 (500)
T KOG0120|consen 246 IFEG--RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVK 323 (500)
T ss_pred hhCC--CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeec
Confidence 2333 222211111 11112246799999999999999999999999999999888
Q ss_pred CC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeeccCh
Q 013926 136 GS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 183 (434)
Q Consensus 136 ~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~~~ 183 (434)
+. +|.++||||.+|-+......|+..|||.. +++. .+++..|...
T Consensus 324 d~~~g~skg~af~ey~dpsvtd~A~agLnGm~-lgd~--~lvvq~A~~g 369 (500)
T KOG0120|consen 324 DSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ-LGDK--KLVVQRAIVG 369 (500)
T ss_pred ccccccccceeeeeeeCCcchhhhhcccchhh-hcCc--eeEeehhhcc
Confidence 87 68999999999999999999999999998 4444 4677766443
No 53
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.70 E-value=1.9e-15 Score=137.05 Aligned_cols=241 Identities=23% Similarity=0.341 Sum_probs=151.5
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhh-ccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEee
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 179 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~-~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~ 179 (434)
.+.+||+|||++..|++|+++|+ +.|+|+.|.++.|..|+++|+|.|+|+++|.+++|++.||... ++|+ +|+|+.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~-~~GR--~l~vKE 120 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYE-VNGR--ELVVKE 120 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhcc-ccCc--eEEEec
Confidence 46699999999999999999996 5789999999999999999999999999999999999999876 7887 677775
Q ss_pred ccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCC--cCcccCCCCC-----CCCCCCCcC
Q 013926 180 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGS--YGLMQYRLPP-----MQNQPGFHG 252 (434)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~-----~~~~~~~~~ 252 (434)
....+..+..+ -.. +... .+ .+...-..+..+..... .|......++ .+.......
T Consensus 121 d~d~q~~~~~~-----~~r------~g~~--~f----~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t 183 (608)
T KOG4212|consen 121 DHDEQRDQYGR-----IVR------DGGG--GF----GGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNT 183 (608)
T ss_pred cCchhhhhhhh-----eee------ccCc--cc----ccCcceecccccccccCCCCccccCCCCcccccccccccCccc
Confidence 54432211111 000 0000 00 00000001111111111 0100000000 000000000
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 253 IIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTS 332 (434)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (434)
+...... .+.+..+. ......-
T Consensus 184 ~~~~~~~----------------------------~~~~~lfg--------------l~~~Flr---------------- 205 (608)
T KOG4212|consen 184 MSNDYNN----------------------------SSNYNLFG--------------LSASFLR---------------- 205 (608)
T ss_pred ccccccc----------------------------chhhhccc--------------chhhhhh----------------
Confidence 0000000 00000000 0000000
Q ss_pred CCCCCCCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 013926 333 SSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412 (434)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 412 (434)
.. .-...|....+||.||.+.+....|++.|.--|.|+.+.+..++ .|.++|++.++|.++-+|-.|+..|++
T Consensus 206 -----~~-h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 206 -----SL-HIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred -----hc-cCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhcc
Confidence 00 00123355679999999999999999999999999999999996 689999999999999999999999999
Q ss_pred ceeCCeEEEEEEec
Q 013926 413 CQLGGKKLKVQLKR 426 (434)
Q Consensus 413 ~~l~g~~i~v~~a~ 426 (434)
.-+..++..+.+.+
T Consensus 279 ~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 279 QGLFDRRMTVRLDR 292 (608)
T ss_pred CCCccccceeeccc
Confidence 88888988888754
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.70 E-value=1.5e-16 Score=114.24 Aligned_cols=70 Identities=33% Similarity=0.690 Sum_probs=67.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 013926 351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 421 (434)
Q Consensus 351 v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~ 421 (434)
|||+|||.++|+++|+++|+.||.|..+++..+ .++..+|+|||+|.+.++|++|++.|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5899999999999999999999999999999999986
No 55
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.70 E-value=7.2e-16 Score=127.78 Aligned_cols=85 Identities=25% Similarity=0.354 Sum_probs=67.2
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccC-CC-CCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEe
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQ-QTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 178 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~-~~-~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~ 178 (434)
.++|||.+||.++...||+.+|+.|--.+...+... +. .-.+-+||+.|.+..+|..|+..|||..+-......+.+.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 589999999999999999999999876665555333 22 2345799999999999999999999988555555567788
Q ss_pred eccChHH
Q 013926 179 WADTEKE 185 (434)
Q Consensus 179 ~a~~~~~ 185 (434)
+|..+..
T Consensus 114 lAKSNtK 120 (284)
T KOG1457|consen 114 LAKSNTK 120 (284)
T ss_pred ehhcCcc
Confidence 7766543
No 56
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.68 E-value=1.6e-15 Score=127.25 Aligned_cols=206 Identities=21% Similarity=0.376 Sum_probs=140.2
Q ss_pred CeEEEeCCCCCCcHHHHHH----hhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEE
Q 013926 102 HKLFIGMLPKNVSEAEVSA----LFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 177 (434)
Q Consensus 102 ~~v~v~nlp~~~~~~~l~~----~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v 177 (434)
.+|||.||+..+..++|+. +|++||.|..|...+. .+.+|.|||.|++.+.|-.|+..|+|-.++ |. +|.+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt--~KmRGQA~VvFk~~~~As~A~r~l~gfpFy-gK--~mri 84 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT--PKMRGQAFVVFKETEAASAALRALQGFPFY-GK--PMRI 84 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC--CCccCceEEEecChhHHHHHHHHhcCCccc-Cc--hhhe
Confidence 4899999999999888877 9999999998888754 456899999999999999999999997644 44 5888
Q ss_pred eeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCC
Q 013926 178 KWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 257 (434)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 257 (434)
.||..+.....++................... .. ....++..+.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~---~~-----~~~~ng~~~~---------------------------- 128 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARI---KQ-----PLDTNGHFYN---------------------------- 128 (221)
T ss_pred ecccCccchhhccCceeccccCcccccccccc---CC-----cccccccccc----------------------------
Confidence 88877654433321100000000000000000 00 0000000000
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 258 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 337 (434)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (434)
...... +++.
T Consensus 129 ------------------~~~~~~---------------------------------------p~p~------------- 138 (221)
T KOG4206|consen 129 ------------------MNRMNL---------------------------------------PPPF------------- 138 (221)
T ss_pred ------------------cccccC---------------------------------------CCCc-------------
Confidence 000000 0000
Q ss_pred CCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC-
Q 013926 338 GSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG- 416 (434)
Q Consensus 338 ~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~- 416 (434)
. ....++..++++.|||..++.+.|..+|++|.....++++... .|.|||+|.+...|..|...|+|..+-
T Consensus 139 -~--~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~ 210 (221)
T KOG4206|consen 139 -L--AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITK 210 (221)
T ss_pred -c--ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceecc
Confidence 0 0012356789999999999999999999999999999988764 458999999999999999999999996
Q ss_pred CeEEEEEEec
Q 013926 417 GKKLKVQLKR 426 (434)
Q Consensus 417 g~~i~v~~a~ 426 (434)
...|+|.+|+
T Consensus 211 ~~~m~i~~a~ 220 (221)
T KOG4206|consen 211 KNTMQITFAK 220 (221)
T ss_pred CceEEecccC
Confidence 8899998875
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.7e-16 Score=133.54 Aligned_cols=82 Identities=29% Similarity=0.491 Sum_probs=79.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|.|.||+.++++++|.++|..||.|.++.|.+++++|+++|||||.|.++++|.+|+..|||+-+++-.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 013926 427 DN 428 (434)
Q Consensus 427 ~~ 428 (434)
.+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 76
No 58
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.67 E-value=1e-15 Score=141.43 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=66.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
...+|.+++||+.||++||.+||+..--|....++.....+++.|.|||+|++.+.|++|+.. |...|+.|-|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 446799999999999999999999985555533333335788999999999999999999997 8999999999987653
No 59
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=3.9e-15 Score=119.80 Aligned_cols=172 Identities=22% Similarity=0.315 Sum_probs=124.7
Q ss_pred CCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEee
Q 013926 100 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 179 (434)
Q Consensus 100 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~ 179 (434)
.+++|||+|||.++.+.+|.++|.+||.|.+|.+..... ...||||+|++.-||+.||..-+|.. ++|+ .|.|.+
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYd-ydg~--rLRVEf 79 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYD-YDGC--RLRVEF 79 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccc-cCcc--eEEEEe
Confidence 467899999999999999999999999999988754322 35699999999999999999999977 7887 578887
Q ss_pred ccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCC
Q 013926 180 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 259 (434)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 259 (434)
+..-.. ...... +++....++.|......|
T Consensus 80 prggr~------------------------s~~~~G---------~y~gggrgGgg~gg~rgp----------------- 109 (241)
T KOG0105|consen 80 PRGGRS------------------------SSDRRG---------SYSGGGRGGGGGGGRRGP----------------- 109 (241)
T ss_pred ccCCCc------------------------cccccc---------ccCCCCCCCCCCCcccCC-----------------
Confidence 743210 000000 000000000000000000
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 260 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 339 (434)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (434)
T Consensus 110 -------------------------------------------------------------------------------- 109 (241)
T KOG0105|consen 110 -------------------------------------------------------------------------------- 109 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC
Q 013926 340 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 416 (434)
Q Consensus 340 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~ 416 (434)
...-....|.|++||...+++||++....-|+|....+.++. +++|+|.+.|+...|++.|....+.
T Consensus 110 ---psrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-------~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 110 ---PSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-------VGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ---cccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-------ceeeeeeehhhHHHHHHhhcccccc
Confidence 001133579999999999999999999999999999987763 7999999999999999999877663
No 60
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.66 E-value=7.9e-15 Score=129.55 Aligned_cols=190 Identities=19% Similarity=0.341 Sum_probs=137.5
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCee--------EEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCc
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIK--------DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 172 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~--------~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~ 172 (434)
.+.|||.|||.++|.+++.++|+..|.|. .|++.++.+|..+|-|+|.|-..+++.-|++.|++.. +.|+
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~-~rg~- 211 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDE-LRGK- 211 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccc-ccCc-
Confidence 56799999999999999999999999775 5788999999999999999999999999999999977 6666
Q ss_pred ceEEEeeccChHHH----------HHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCC
Q 013926 173 VPLVVKWADTEKER----------QARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLP 242 (434)
Q Consensus 173 ~~i~v~~a~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 242 (434)
.|.|..|.-.... ......+......-+-++.+.
T Consensus 212 -~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd----------------------------------- 255 (382)
T KOG1548|consen 212 -KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPD----------------------------------- 255 (382)
T ss_pred -EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCC-----------------------------------
Confidence 5777777332110 000000000000000000000
Q ss_pred CCCCCCCCcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 243 PMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 322 (434)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (434)
T Consensus 256 -------------------------------------------------------------------------------- 255 (382)
T KOG1548|consen 256 -------------------------------------------------------------------------------- 255 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCceEEEcCC--CC--CCC-------HHHHHHHhhccCCeEEEEEEecCCCCCeee
Q 013926 323 AVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHI--PQ--EFG-------DQELGNAFQAFGRVLSAKVFVDKATGVSKC 391 (434)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nL--p~--~~t-------~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g 391 (434)
....+..-..++|.++|| |. ..+ .++|++-+++||.|.+|.|. + ..+.|
T Consensus 256 ----------------~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d---~hPdG 315 (382)
T KOG1548|consen 256 ----------------RDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-D---RHPDG 315 (382)
T ss_pred ----------------ccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-c---cCCCc
Confidence 000112225588999999 22 233 36788889999999999774 3 23678
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 013926 392 FGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 428 (434)
Q Consensus 392 ~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~~ 428 (434)
.+-|.|.+.++|..|++.|+|+.|+||+|.-+++..+
T Consensus 316 vvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 316 VVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred eeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 9999999999999999999999999999998877543
No 61
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.66 E-value=1.1e-15 Score=109.62 Aligned_cols=70 Identities=31% Similarity=0.657 Sum_probs=65.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 013926 351 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 421 (434)
Q Consensus 351 v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~ 421 (434)
|+|+|||.++++++|+++|+.||.|..+++..+++ |+++|+|||+|.+.++|.+|++.++|..++|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 99999999999999999999999999999999985
No 62
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.65 E-value=3.2e-14 Score=127.09 Aligned_cols=163 Identities=17% Similarity=0.194 Sum_probs=121.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhc---c-CceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKE---F-ALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~---~-g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
..--|.+++||+++++.||.+||.. . |..+.+.+++..+.+..+-|||.|..+++|+.||.+. +..++.+.+++
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~kh--rq~iGqRYIEl 237 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKH--RQNIGQRYIEL 237 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHH--HHHHhHHHHHH
Confidence 3467889999999999999999952 2 3467788888776666669999999999999999873 22232221111
Q ss_pred ----------------------------ee--eccCcccccCCCeEEEeCCCCCCcHHHHHHhhhccCC-ee--EEEEcc
Q 013926 89 ----------------------------QV--KYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT-IK--DLQILR 135 (434)
Q Consensus 89 ----------------------------~~--~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~-i~--~i~~~~ 135 (434)
-. ............||.+++||+..+.++|.++|..|.. |. .|+|..
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 00 0000111122578999999999999999999999973 44 489999
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeec
Q 013926 136 GSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180 (434)
Q Consensus 136 ~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a 180 (434)
+..|++.|.|||+|.++|+|..|..+++++. ..++ .|.|-.+
T Consensus 318 N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~-mk~R--YiEvfp~ 359 (508)
T KOG1365|consen 318 NGQGRPSGEAFIQMRNAERARAAAQKCHKKL-MKSR--YIEVFPC 359 (508)
T ss_pred cCCCCcChhhhhhhhhhHHHHHHHHHHHHhh-cccc--eEEEeec
Confidence 9999999999999999999999999998865 4444 3445444
No 63
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=1.3e-15 Score=133.54 Aligned_cols=80 Identities=34% Similarity=0.581 Sum_probs=74.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|+|+|||+..-+-||+..|.+||+|.+|.|+.+ ..-+||||||.|++.+||++|.++|||..|+||+|.|..|-
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 4578999999999999999999999999999999988 34589999999999999999999999999999999999875
Q ss_pred CC
Q 013926 427 DN 428 (434)
Q Consensus 427 ~~ 428 (434)
.+
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 43
No 64
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=6.2e-16 Score=129.80 Aligned_cols=78 Identities=28% Similarity=0.448 Sum_probs=74.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 427 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~ 427 (434)
+.|||+||+..+..++|+++|++||+|+.+.|+.|+.+|++||||||.|++.++|.+|++. -.-.|+||+..|.+|--
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 6799999999999999999999999999999999999999999999999999999999998 57789999999998765
No 65
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.61 E-value=8e-16 Score=126.02 Aligned_cols=81 Identities=27% Similarity=0.460 Sum_probs=77.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 013926 348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 427 (434)
Q Consensus 348 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~ 427 (434)
-.+|.|.||-+.++.++|+.+|++||.|-+|.|+.|+.+++++|||||.|....+|+.|+.+|+|..|+|+.|+|++|+-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred C
Q 013926 428 N 428 (434)
Q Consensus 428 ~ 428 (434)
.
T Consensus 93 g 93 (256)
T KOG4207|consen 93 G 93 (256)
T ss_pred C
Confidence 3
No 66
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.60 E-value=4.5e-15 Score=121.25 Aligned_cols=83 Identities=28% Similarity=0.364 Sum_probs=74.7
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCcee
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 89 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~ 89 (434)
...+++|||+|||++++|++|+++|++||.|.+|.++.++.++.++ ||||+|.+.++|++||+.||+.. +.+ +.++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~-i~G--r~l~ 107 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE-LNG--RHIR 107 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE-ECC--EEEE
Confidence 3457899999999999999999999999999999999999999988 99999999999999999998875 666 7788
Q ss_pred eeccCcc
Q 013926 90 VKYADGE 96 (434)
Q Consensus 90 ~~~~~~~ 96 (434)
|.++..+
T Consensus 108 V~~a~~~ 114 (144)
T PLN03134 108 VNPANDR 114 (144)
T ss_pred EEeCCcC
Confidence 8777644
No 67
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.59 E-value=2e-12 Score=115.34 Aligned_cols=278 Identities=19% Similarity=0.250 Sum_probs=187.9
Q ss_pred CceEEEcCCC--CCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 14 RVKLFVGQVP--KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 14 ~~~l~v~nLp--~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
...|.+.-|. +.+|-+-|..+....|+|..|.+++. ++ .|.|+|++.+.|++|-+.|||..++.|+ +.+++
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~alNGADIYsGC-CTLKI 193 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAALNGADIYSGC-CTLKI 193 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEeechhHHHHHHHhhcccccccccc-eeEEE
Confidence 3344444443 67899999999999999999998875 34 8999999999999999999999988875 55666
Q ss_pred eccCcccccC----------------------------------------------------------------------
Q 013926 91 KYADGELERL---------------------------------------------------------------------- 100 (434)
Q Consensus 91 ~~~~~~~~~~---------------------------------------------------------------------- 100 (434)
.++++..-+.
T Consensus 194 eyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~ 273 (494)
T KOG1456|consen 194 EYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYR 273 (494)
T ss_pred EecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccc
Confidence 6655322000
Q ss_pred -------------CCeEEEeCCCCC-CcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCc
Q 013926 101 -------------EHKLFIGMLPKN-VSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKH 166 (434)
Q Consensus 101 -------------~~~v~v~nlp~~-~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~ 166 (434)
...+.|.+|.-. +.-+-|..+|..||.|+.|++++.+ .|.|.|++.+..+.++|+..||+..
T Consensus 274 ~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~ 349 (494)
T KOG1456|consen 274 DGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIP 349 (494)
T ss_pred cCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCc
Confidence 124778888754 4557799999999999999999876 4589999999999999999999988
Q ss_pred cCCCCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCC
Q 013926 167 KMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQN 246 (434)
Q Consensus 167 ~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 246 (434)
++++. |.+..+...... . .+...+++ ++...-.|
T Consensus 350 lfG~k---l~v~~SkQ~~v~--~------~~pflLpD----------------------------gSpSfKdy------- 383 (494)
T KOG1456|consen 350 LFGGK---LNVCVSKQNFVS--P------VQPFLLPD----------------------------GSPSFKDY------- 383 (494)
T ss_pred cccce---EEEeeccccccc--c------CCceecCC----------------------------CCcchhhc-------
Confidence 76553 555544322100 0 00000000 00000000
Q ss_pred CCCCcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 247 QPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVAN 326 (434)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (434)
..++ ..-+.
T Consensus 384 ---------------------------s~Sk-------------------------------------------NnRFs- 392 (494)
T KOG1456|consen 384 ---------------------------SGSK-------------------------------------------NNRFS- 392 (494)
T ss_pred ---------------------------cccc-------------------------------------------ccccC-
Confidence 0000 00000
Q ss_pred CCCCCCCCCCCCCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEEecCCCCCeeeEEEEEeCCHHHHHH
Q 013926 327 SNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGR-VLSAKVFVDKATGVSKCFGFVSYESPASAQN 405 (434)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~-v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 405 (434)
++.+++ ..--.+++++|..-|.|..+||+.|.++|..-+. ..+|+|...+ +.++. -|.++|.+.++|-.
T Consensus 393 --sp~qAs------KNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~k-serSs-sGllEfe~~s~Ave 462 (494)
T KOG1456|consen 393 --SPEQAS------KNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLK-SERSS-SGLLEFENKSDAVE 462 (494)
T ss_pred --ChhHhh------cccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccc-ccccc-cceeeeehHHHHHH
Confidence 000000 0012336788999999999999999999987654 4777887665 44433 48999999999999
Q ss_pred HHHHhCCceeCC------eEEEEEEecCC
Q 013926 406 AIAMMNGCQLGG------KKLKVQLKRDN 428 (434)
Q Consensus 406 A~~~l~g~~l~g------~~i~v~~a~~~ 428 (434)
|+..+|...+.+ -.|++.|+-++
T Consensus 463 al~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 463 ALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred HHHHhccccccCCCCCCCeeeeeeecccc
Confidence 999999999977 35666665543
No 68
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=4.4e-15 Score=118.75 Aligned_cols=80 Identities=23% Similarity=0.472 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
+..+.|||+||+.++++.||...|..||.|.+|+|... +.|||||+|+++.+|+.|+.+|+|..|.|.+|+|.++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 35688999999999999999999999999999999775 5789999999999999999999999999999999999
Q ss_pred cCCcC
Q 013926 426 RDNKQ 430 (434)
Q Consensus 426 ~~~~~ 430 (434)
.-++.
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 87664
No 69
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=4e-15 Score=112.44 Aligned_cols=80 Identities=15% Similarity=0.310 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
.++||||+||++-++||+|.++|++.|+|..|.+-.++.+..+=|||||.|.+.++|..|++.+||..++.+.|++.|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 57899999999999999999999999999999998998887888999999999999999999999999999999999854
No 70
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.4e-14 Score=126.34 Aligned_cols=77 Identities=10% Similarity=0.280 Sum_probs=71.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 013926 348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 427 (434)
Q Consensus 348 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~ 427 (434)
.++|||+|||+.+|+++|+++|+.||+|.+|+|+.++. ++|||||.|.++++|..|+. |||..|.|+.|+|.++++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 47899999999999999999999999999999988753 57999999999999999996 899999999999999875
Q ss_pred C
Q 013926 428 N 428 (434)
Q Consensus 428 ~ 428 (434)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 71
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=3.2e-14 Score=103.42 Aligned_cols=80 Identities=20% Similarity=0.325 Sum_probs=72.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
+..+.|||+|||+.+|.|++.++|.+||.|..++|--.+ ..+|.|||.|.+..+|.+|+..|+|..+.++.+.|-+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 356789999999999999999999999999999997554 35899999999999999999999999999999999887
Q ss_pred cCC
Q 013926 426 RDN 428 (434)
Q Consensus 426 ~~~ 428 (434)
+..
T Consensus 93 q~~ 95 (124)
T KOG0114|consen 93 QPE 95 (124)
T ss_pred CHH
Confidence 654
No 72
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=7.2e-16 Score=123.74 Aligned_cols=81 Identities=27% Similarity=0.507 Sum_probs=76.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
.+.-|||+|||++.|+.||..+|++||+|+.|.+++|+.+|+++||||+.|.+..+...|+..|||..|.||.|+|..--
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999998644
Q ss_pred C
Q 013926 427 D 427 (434)
Q Consensus 427 ~ 427 (434)
.
T Consensus 114 ~ 114 (219)
T KOG0126|consen 114 N 114 (219)
T ss_pred c
Confidence 3
No 73
>PLN03213 repressor of silencing 3; Provisional
Probab=99.54 E-value=2.7e-14 Score=131.55 Aligned_cols=79 Identities=19% Similarity=0.479 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCH--HHHHHHHHHhCCceeCCeEEEEE
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESP--ASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~--~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
....+|||+||+++++++||+.+|+.||.|.+|.|+ +.+| +|||||+|.+. .++.+|+..|||..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 355789999999999999999999999999999998 4577 99999999987 78999999999999999999999
Q ss_pred EecCC
Q 013926 424 LKRDN 428 (434)
Q Consensus 424 ~a~~~ 428 (434)
.|+..
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 99864
No 74
>smart00362 RRM_2 RNA recognition motif.
Probab=99.52 E-value=9.6e-14 Score=99.80 Aligned_cols=72 Identities=39% Similarity=0.714 Sum_probs=67.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 350 ~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
+|+|+|||..+++++|+++|+.||.|..+++..++ +.++|+|||+|.+.++|++|++.+++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998775 7789999999999999999999999999999999874
No 75
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=3.5e-14 Score=120.60 Aligned_cols=165 Identities=25% Similarity=0.455 Sum_probs=125.0
Q ss_pred CeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeecc
Q 013926 102 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 181 (434)
Q Consensus 102 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~ 181 (434)
.+|||++||+.+.+.+|..+|..||.+..+.+. .||+||.|.+.-+|..|+..+++.. +.+.. +.+.|+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~-l~~e~--~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKE-LCGER--LVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCce-eccee--eeeeccc
Confidence 369999999999999999999999999998886 5699999999999999999999987 55553 7777775
Q ss_pred ChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCCCC
Q 013926 182 TEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGN 261 (434)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (434)
...... +. +++ ++.. + ...
T Consensus 72 ~~~~~~-------------------------g~-~~~--------------g~r~-----~------~~~---------- 90 (216)
T KOG0106|consen 72 GKRRGR-------------------------GR-PRG--------------GDRR-----S------DSR---------- 90 (216)
T ss_pred cccccc-------------------------CC-CCC--------------CCcc-----c------hhh----------
Confidence 431000 00 000 0000 0 000
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 262 AMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGG 341 (434)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (434)
.-
T Consensus 91 ------------------------------------------------------------------------------~~ 92 (216)
T KOG0106|consen 91 ------------------------------------------------------------------------------RY 92 (216)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred CccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 013926 342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 421 (434)
Q Consensus 342 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~ 421 (434)
.......+++.|.|++..+.+++|.+.|+.+|.+....+. .+++||+|.+.++|.+|+..|++..+.|+.|+
T Consensus 93 ~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~ 164 (216)
T KOG0106|consen 93 RPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRIS 164 (216)
T ss_pred CCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchhhcCceee
Confidence 0001144789999999999999999999999999655442 34799999999999999999999999999999
Q ss_pred EE
Q 013926 422 VQ 423 (434)
Q Consensus 422 v~ 423 (434)
+.
T Consensus 165 ~~ 166 (216)
T KOG0106|consen 165 VE 166 (216)
T ss_pred ec
Confidence 83
No 76
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.51 E-value=9.6e-13 Score=110.63 Aligned_cols=158 Identities=20% Similarity=0.400 Sum_probs=123.7
Q ss_pred ccCCceEEEcCCCCCCCHHHHHH----HHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLA----MFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~----~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
-.+..+|||.||+.-+..++|+. +|++||.|..|...+. .+.+ .|||.|.+.+.|..|+++|+|-..+ |
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFy-g-- 79 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFY-G-- 79 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCccc-C--
Confidence 34555999999999999999998 9999999999887764 4455 9999999999999999999986533 3
Q ss_pred CceeeeccCccc---------------------------------------------------ccCCCeEEEeCCCCCCc
Q 013926 86 SPLQVKYADGEL---------------------------------------------------ERLEHKLFIGMLPKNVS 114 (434)
Q Consensus 86 ~~i~~~~~~~~~---------------------------------------------------~~~~~~v~v~nlp~~~~ 114 (434)
+++++.++.... ......+++.|||.+++
T Consensus 80 K~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~ 159 (221)
T KOG4206|consen 80 KPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESE 159 (221)
T ss_pred chhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchh
Confidence 444444432111 11235689999999999
Q ss_pred HHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeec
Q 013926 115 EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180 (434)
Q Consensus 115 ~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a 180 (434)
.+.+..+|.+|.--.+|+++... .+.|||+|.+...+..|...+.+..+-.. ..|.+.++
T Consensus 160 ~e~l~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~--~~m~i~~a 219 (221)
T KOG4206|consen 160 SEMLSDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKK--NTMQITFA 219 (221)
T ss_pred HHHHHHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccC--ceEEeccc
Confidence 99999999999988888887653 56999999999999999999988764322 24666554
No 77
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.5e-13 Score=119.19 Aligned_cols=81 Identities=25% Similarity=0.519 Sum_probs=76.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
.+=+||||.-|++++++.+|+..|+.||.|..++|+++..+|+++|||||.|.+.-+...|-+..+|..|+|++|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 35589999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred c
Q 013926 426 R 426 (434)
Q Consensus 426 ~ 426 (434)
+
T Consensus 179 R 179 (335)
T KOG0113|consen 179 R 179 (335)
T ss_pred c
Confidence 4
No 78
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=7.1e-14 Score=106.64 Aligned_cols=84 Identities=25% Similarity=0.442 Sum_probs=80.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
.+..|||.++...+|+++|.+.|+.||+|..+++-.++.+|..+|||+|+|.+.++|+.|+..|||..|-|..|.|.|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCcC
Q 013926 427 DNKQ 430 (434)
Q Consensus 427 ~~~~ 430 (434)
.+..
T Consensus 151 v~gp 154 (170)
T KOG0130|consen 151 VKGP 154 (170)
T ss_pred ecCC
Confidence 6653
No 79
>smart00360 RRM RNA recognition motif.
Probab=99.49 E-value=1.3e-13 Score=98.70 Aligned_cols=71 Identities=38% Similarity=0.681 Sum_probs=67.3
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 353 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 353 V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999987789999999999999999999999999999999999873
No 80
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=4.5e-14 Score=119.96 Aligned_cols=143 Identities=24% Similarity=0.427 Sum_probs=117.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeeccC
Q 013926 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYAD 94 (434)
Q Consensus 15 ~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~~ 94 (434)
..+||++||+.+.+.||..||+.||.+..+.+..- |+||+|.+..+|..|+..+|+..+ ++-. +.+.++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g-------f~fv~fed~rda~Dav~~l~~~~l-~~e~--~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNG-------FGFVEFEDPRDADDAVHDLDGKEL-CGER--LVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecc-------cceeccCchhhhhcccchhcCcee-ccee--eeeeccc
Confidence 47999999999999999999999999999887543 899999999999999999998874 4422 5555554
Q ss_pred cc---------------------cccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHH
Q 013926 95 GE---------------------LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKE 153 (434)
Q Consensus 95 ~~---------------------~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~ 153 (434)
.. .......+.|.++...+.+.+|.+.|+.+|.+...... .+++||+|...+
T Consensus 72 ~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~~ 144 (216)
T KOG0106|consen 72 GKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQE 144 (216)
T ss_pred ccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehhhh
Confidence 21 01225678999999999999999999999998544442 569999999999
Q ss_pred HHHHHHHHhcCCccCCCCcceEEE
Q 013926 154 QALAALEAINGKHKMEGSSVPLVV 177 (434)
Q Consensus 154 ~a~~a~~~l~~~~~~~g~~~~i~v 177 (434)
++.+|++.|++.. +.++ .|.+
T Consensus 145 da~ra~~~l~~~~-~~~~--~l~~ 165 (216)
T KOG0106|consen 145 DAKRALEKLDGKK-LNGR--RISV 165 (216)
T ss_pred hhhhcchhccchh-hcCc--eeee
Confidence 9999999999988 5666 3555
No 81
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.48 E-value=8.9e-14 Score=131.66 Aligned_cols=82 Identities=33% Similarity=0.604 Sum_probs=79.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 428 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~~ 428 (434)
++|||+|+|+++++++|.++|+..|.|.++++..|+.+|+++||||++|.+.++|.+|++.|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cC
Q 013926 429 KQ 430 (434)
Q Consensus 429 ~~ 430 (434)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 64
No 82
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.47 E-value=3.8e-13 Score=115.38 Aligned_cols=77 Identities=9% Similarity=0.254 Sum_probs=70.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
.+.+|||+||++.+|+++|++||+.||+|.+|+|+.+. ..+|+|||.|.++++|+.|+. |||..|.|++|.|.-+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999874 456899999999999999995 89999999999998755
Q ss_pred C
Q 013926 427 D 427 (434)
Q Consensus 427 ~ 427 (434)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 83
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.47 E-value=1.9e-13 Score=97.95 Aligned_cols=65 Identities=29% Similarity=0.638 Sum_probs=58.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 17 l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
|||+|||+++|+++|+++|+.||.|..+.+..+ .++..+ +|||+|.+.++|++|++.+++.. +.|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~-~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKK-ING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEE-ETT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCE-ECc
Confidence 799999999999999999999999999999998 455555 99999999999999999999865 444
No 84
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.47 E-value=1.1e-12 Score=109.18 Aligned_cols=153 Identities=25% Similarity=0.344 Sum_probs=114.0
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecC-CCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDK-TTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~-~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
...-++|||.+||.|+...+|..+|..|-.-+.+.+.... ...-++ +|||.|.+..+|..|+..|||..+-......+
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3446999999999999999999999998766766665433 333355 99999999999999999999976544444444
Q ss_pred eeeccCccccc---------------------------------------------------------------------
Q 013926 89 QVKYADGELER--------------------------------------------------------------------- 99 (434)
Q Consensus 89 ~~~~~~~~~~~--------------------------------------------------------------------- 99 (434)
++..++.....
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 44433311100
Q ss_pred ------------------CCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHH
Q 013926 100 ------------------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 161 (434)
Q Consensus 100 ------------------~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~ 161 (434)
...+|||.||..++++++|+.+|+.|.--..++| +...| -..||++|+..+.|..||..
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~-~~~~g--~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKI-RARGG--MPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEE-ecCCC--cceEeecHHHHHHHHHHHHH
Confidence 0136999999999999999999999964333333 22333 34899999999999999999
Q ss_pred hcCCc
Q 013926 162 INGKH 166 (434)
Q Consensus 162 l~~~~ 166 (434)
|.|..
T Consensus 268 lqg~~ 272 (284)
T KOG1457|consen 268 LQGNL 272 (284)
T ss_pred hhcce
Confidence 98865
No 85
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.44 E-value=1e-12 Score=94.88 Aligned_cols=74 Identities=35% Similarity=0.692 Sum_probs=68.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 350 ~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
+|+|+|||..+++++|+++|+.||.|..+.+..++. +.++|+|||+|.+.++|..|+..+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998864 47899999999999999999999999999999999864
No 86
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.43 E-value=7.4e-13 Score=90.08 Aligned_cols=56 Identities=41% Similarity=0.641 Sum_probs=51.0
Q ss_pred HHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 365 LGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 365 L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
|+++|++||+|.++.+..+. +|+|||+|.+.++|++|++.|||..++|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999997653 579999999999999999999999999999999986
No 87
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=9.4e-14 Score=114.98 Aligned_cols=85 Identities=27% Similarity=0.464 Sum_probs=81.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..+||||++|..++++.-|...|=.||+|.+|.++.|-++++++|||||+|.-.|+|..|+..||+..|.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCC
Q 013926 427 DNKQN 431 (434)
Q Consensus 427 ~~~~~ 431 (434)
..+..
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 87653
No 88
>smart00361 RRM_1 RNA recognition motif.
Probab=99.42 E-value=8.8e-13 Score=94.03 Aligned_cols=62 Identities=23% Similarity=0.485 Sum_probs=56.2
Q ss_pred HHHHHHHhh----ccCCeEEEE-EEecCCC--CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 362 DQELGNAFQ----AFGRVLSAK-VFVDKAT--GVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 362 ~~~L~~~F~----~fG~v~~v~-i~~~~~~--g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
+++|+++|+ .||.|.++. |..++.+ +.++|||||.|.+.++|.+|+..|||..+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999995 7777666 8999999999999999999999999999999999863
No 89
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=7.8e-13 Score=111.69 Aligned_cols=84 Identities=23% Similarity=0.386 Sum_probs=75.4
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
+..+.++|.|.||+.+++|+||+++|..||.|..|.+.+|+.||.++ ||||.|.+.++|.+||+.|||.- + .+.-+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~g-y--d~LIL 261 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYG-Y--DNLIL 261 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcc-c--ceEEE
Confidence 44478999999999999999999999999999999999999999999 99999999999999999999854 2 33667
Q ss_pred eeeccCcc
Q 013926 89 QVKYADGE 96 (434)
Q Consensus 89 ~~~~~~~~ 96 (434)
+|.|+.++
T Consensus 262 rvEwskP~ 269 (270)
T KOG0122|consen 262 RVEWSKPS 269 (270)
T ss_pred EEEecCCC
Confidence 88888754
No 90
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.39 E-value=1.5e-12 Score=93.23 Aligned_cols=65 Identities=31% Similarity=0.568 Sum_probs=57.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 17 l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
|||+|||++++++||+++|+.+|.|..+.+..++. +..+ +|||+|.+.++|++|++.+++.. +.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~-~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKE-IDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEE-ETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcE-ECC
Confidence 79999999999999999999999999999999987 6666 99999999999999999987554 555
No 91
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=1e-12 Score=110.68 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=68.2
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCcee
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 89 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~ 89 (434)
+..-++|||++|+|++..++|+++|++||.|++..++.|+.+++++ |+||.|++.+.|++|++.- ..++.|+.-...
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp--~piIdGR~aNcn 86 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP--NPIIDGRKANCN 86 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC--CCcccccccccc
Confidence 3345799999999999999999999999999999999999999999 9999999999999999884 456777544433
Q ss_pred e
Q 013926 90 V 90 (434)
Q Consensus 90 ~ 90 (434)
+
T Consensus 87 l 87 (247)
T KOG0149|consen 87 L 87 (247)
T ss_pred h
Confidence 3
No 92
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.36 E-value=2.9e-12 Score=118.81 Aligned_cols=79 Identities=35% Similarity=0.634 Sum_probs=76.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 348 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
.++|||+|||.++|+++|+++|..||.|.++++..++.+|+++|||||.|.+.++|..|+..++|..|.|++|+|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5899999999999999999999999999999999998899999999999999999999999999999999999999965
No 93
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=1.9e-12 Score=113.77 Aligned_cols=80 Identities=24% Similarity=0.437 Sum_probs=72.1
Q ss_pred CCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEee
Q 013926 100 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 179 (434)
Q Consensus 100 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~ 179 (434)
..++|+|+|||+...+.||+.+|++||+|.+|.|+.+..| +||||||+|++.+||++|.++|+|.. +.|+ +|.|+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~-VEGR--kIEVn~ 170 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTV-VEGR--KIEVNN 170 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcce-eece--EEEEec
Confidence 3689999999999999999999999999999999988766 59999999999999999999999986 8888 577777
Q ss_pred ccCh
Q 013926 180 ADTE 183 (434)
Q Consensus 180 a~~~ 183 (434)
|..+
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 7554
No 94
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=4.6e-12 Score=101.61 Aligned_cols=78 Identities=22% Similarity=0.394 Sum_probs=67.2
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCceeee
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 91 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~ 91 (434)
.-.++|||+||+..+++.||...|..||++.+|++-.++- +||||+|++..||..|+..|+++. ++| ..++|.
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP----GfAFVEFed~RDA~DAvr~LDG~~-~cG--~r~rVE 80 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP----GFAFVEFEDPRDAEDAVRYLDGKD-ICG--SRIRVE 80 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC----CceEEeccCcccHHHHHhhcCCcc-ccC--ceEEEE
Confidence 3478999999999999999999999999999999988542 399999999999999999999987 777 566666
Q ss_pred ccCcc
Q 013926 92 YADGE 96 (434)
Q Consensus 92 ~~~~~ 96 (434)
.....
T Consensus 81 ~S~G~ 85 (195)
T KOG0107|consen 81 LSTGR 85 (195)
T ss_pred eecCC
Confidence 55533
No 95
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=3e-12 Score=96.99 Aligned_cols=86 Identities=19% Similarity=0.381 Sum_probs=73.2
Q ss_pred ccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCC
Q 013926 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGA 84 (434)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~ 84 (434)
+..+.-..+++|||+||++.++|+.|.++|+.+|+|..|.|=.|+.+.+.= ||||+|-+.++|..|++.+++.. +..
T Consensus 28 e~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgtr-Ldd- 105 (153)
T KOG0121|consen 28 EQLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTR-LDD- 105 (153)
T ss_pred HHHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCc-ccc-
Confidence 344556789999999999999999999999999999999999888776644 99999999999999999998876 444
Q ss_pred CCceeeeccC
Q 013926 85 SSPLQVKYAD 94 (434)
Q Consensus 85 ~~~i~~~~~~ 94 (434)
++|++.|..
T Consensus 106 -r~ir~D~D~ 114 (153)
T KOG0121|consen 106 -RPIRIDWDA 114 (153)
T ss_pred -cceeeeccc
Confidence 666666554
No 96
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.31 E-value=1.1e-11 Score=108.37 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=65.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeecc
Q 013926 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 93 (434)
Q Consensus 14 ~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~ 93 (434)
.++|||+|||+.+||++|+++|+.||.|.+|.+..++.+ .+||||+|.+.++|+.||. ||+.. +.| +.|+|...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~--~GfAFVtF~d~eaAe~All-LnG~~-l~g--r~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENER--SQIAYVTFKDPQGAETALL-LSGAT-IVD--QSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC--CCEEEEEeCcHHHHHHHHH-hcCCe-eCC--ceEEEEec
Confidence 579999999999999999999999999999999988642 2499999999999999995 88765 666 67777666
Q ss_pred Cc
Q 013926 94 DG 95 (434)
Q Consensus 94 ~~ 95 (434)
..
T Consensus 78 ~~ 79 (260)
T PLN03120 78 ED 79 (260)
T ss_pred cC
Confidence 53
No 97
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.30 E-value=1.2e-10 Score=103.43 Aligned_cols=153 Identities=12% Similarity=0.319 Sum_probs=119.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceeE--------EEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--------VNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
-...|||.|||.++|-+++.++|+.||.|.. |++.++.. |.-+ -|.+.|-..+++.-|++.|++.. +.|
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~-~rg 210 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDE-LRG 210 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccc-ccC
Confidence 3466999999999999999999999996654 78888876 5555 89999999999999999998876 445
Q ss_pred CCCceeeeccCcc---------------------------------------cccCCCeEEEeCCCC----CCc------
Q 013926 84 ASSPLQVKYADGE---------------------------------------LERLEHKLFIGMLPK----NVS------ 114 (434)
Q Consensus 84 ~~~~i~~~~~~~~---------------------------------------~~~~~~~v~v~nlp~----~~~------ 114 (434)
+.++|..+.-. ..+.+++|.++|+=. ..+
T Consensus 211 --~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~d 288 (382)
T KOG1548|consen 211 --KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLND 288 (382)
T ss_pred --cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHH
Confidence 55655544311 011257899998832 222
Q ss_pred -HHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcc
Q 013926 115 -EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173 (434)
Q Consensus 115 -~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~ 173 (434)
.++|++-++.||.|..|.+.-. .+.|.+-|.|.+.++|..|++.|+|.. ++|+.+
T Consensus 289 lkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~-fdgRql 344 (382)
T KOG1548|consen 289 LKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRW-FDGRQL 344 (382)
T ss_pred HHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCee-ecceEE
Confidence 3577788999999999988633 246799999999999999999999976 888744
No 98
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=1.8e-13 Score=134.52 Aligned_cols=231 Identities=22% Similarity=0.185 Sum_probs=179.4
Q ss_pred CCceEEEcCCCCCCCHH-HHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 13 ERVKLFVGQVPKHMTEA-QLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~-~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
..+..++.++-+..... ..+..|..+|.|+.+.....+...... ++++.+....+++.|..-.-+ . +.+ +...+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~-~-~a~--~~~av 645 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGG-A-LAN--RSAAV 645 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccccccc-c-cCC--ccccC
Confidence 44566777777776666 678999999999998877643333334 889999999999998765322 1 444 22333
Q ss_pred eccCccccc-----------CCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEcc-CCCCCcceEEEEEeCCHHHHHHH
Q 013926 91 KYADGELER-----------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR-GSQQTSKGCAFLKYETKEQALAA 158 (434)
Q Consensus 91 ~~~~~~~~~-----------~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~-~~~~~~~g~a~V~f~~~~~a~~a 158 (434)
..++++... ...++|++||+..+.+++|...|..+|.+..+.+.. ...++.+|+||+.|...+++.+|
T Consensus 646 ~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 646 GLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhh
Confidence 333322211 134689999999999999999999999888776653 33677899999999999999999
Q ss_pred HHHhcCCccCCCCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCccc
Q 013926 159 LEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQ 238 (434)
Q Consensus 159 ~~~l~~~~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 238 (434)
+....... ++
T Consensus 726 V~f~d~~~-~g--------------------------------------------------------------------- 735 (881)
T KOG0128|consen 726 VAFRDSCF-FG--------------------------------------------------------------------- 735 (881)
T ss_pred hhhhhhhh-hh---------------------------------------------------------------------
Confidence 97666542 21
Q ss_pred CCCCCCCCCCCCcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 239 YRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPG 318 (434)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (434)
T Consensus 736 -------------------------------------------------------------------------------- 735 (881)
T KOG0128|consen 736 -------------------------------------------------------------------------------- 735 (881)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeC
Q 013926 319 SVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYE 398 (434)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~ 398 (434)
...|+|+|.|+..|.++|+.+|+++|++.+++++..+ .|+++|.|+|.|.
T Consensus 736 -----------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~ 785 (881)
T KOG0128|consen 736 -----------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYN 785 (881)
T ss_pred -----------------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCC
Confidence 0248999999999999999999999999999988875 8999999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 013926 399 SPASAQNAIAMMNGCQLGGKKLKVQLKRD 427 (434)
Q Consensus 399 ~~~~A~~A~~~l~g~~l~g~~i~v~~a~~ 427 (434)
+..+|.+++....+..+.-+.+.|.+++.
T Consensus 786 ~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 786 TEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred CcchhhhhcccchhhhhhhcCccccccCC
Confidence 99999999999888888888888777443
No 99
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=8.1e-10 Score=104.49 Aligned_cols=69 Identities=19% Similarity=0.341 Sum_probs=59.7
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCcc
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKT 80 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~ 80 (434)
.+++-+.++|+|-|||.++++++|+.+|..||.|.+|..-..++. ..||+|-|..+|+.|++.||+..+
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~----~~~v~FyDvR~A~~Alk~l~~~~~ 137 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRG----IVFVEFYDVRDAERALKALNRREI 137 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCc----eEEEEEeehHhHHHHHHHHHHHHh
Confidence 455678899999999999999999999999999999765444321 899999999999999999998763
No 100
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.27 E-value=3.9e-11 Score=111.21 Aligned_cols=78 Identities=38% Similarity=0.743 Sum_probs=70.9
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEee
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 179 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~ 179 (434)
..+|||+|||.++++++|+++|..||.|..+.+..+. ++.++|+|||.|.+.++|..|++.+++.. +.|+ .|.|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~-~~~~--~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKE-LEGR--PLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCe-ECCc--eeEeec
Confidence 4899999999999999999999999999999999885 88999999999999999999999999876 6776 567776
Q ss_pred cc
Q 013926 180 AD 181 (434)
Q Consensus 180 a~ 181 (434)
+.
T Consensus 192 ~~ 193 (306)
T COG0724 192 AQ 193 (306)
T ss_pred cc
Confidence 54
No 101
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=9.1e-11 Score=85.58 Aligned_cols=81 Identities=30% Similarity=0.476 Sum_probs=67.9
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeec
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a 180 (434)
.+-|||+|||+.+|.++.+++|.+||.|..|++-..+.. +|.|||-|++..+|++|++.|+|.. +.++ .+.|-+-
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T--rGTAFVVYedi~dAk~A~dhlsg~n-~~~r--yl~vlyy 92 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET--RGTAFVVYEDIFDAKKACDHLSGYN-VDNR--YLVVLYY 92 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc--CceEEEEehHhhhHHHHHHHhcccc-cCCc--eEEEEec
Confidence 567999999999999999999999999999999776543 7899999999999999999999966 4444 5666665
Q ss_pred cChHHH
Q 013926 181 DTEKER 186 (434)
Q Consensus 181 ~~~~~~ 186 (434)
.+....
T Consensus 93 q~~~~~ 98 (124)
T KOG0114|consen 93 QPEDAF 98 (124)
T ss_pred CHHHHH
Confidence 555433
No 102
>PLN03213 repressor of silencing 3; Provisional
Probab=99.25 E-value=2.3e-11 Score=112.55 Aligned_cols=83 Identities=22% Similarity=0.337 Sum_probs=70.4
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCH--HHHHHHHHHhccCccCCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSR--QEADKAVNACHNKKTLPGA 84 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~--~~A~~al~~~~~~~~~~g~ 84 (434)
++++.....+||||||+++++++||+.+|..||.|.+|.+++ .++ .+||||+|.+. .++.+||+.||+.. +.|
T Consensus 3 eees~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG-RGFAFVEMssdddaEeeKAISaLNGAE-WKG- 77 (759)
T PLN03213 3 EKSSGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG-RSFAYIDFSPSSTNSLTKLFSTYNGCV-WKG- 77 (759)
T ss_pred ccccCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC-CceEEEEecCCcHHHHHHHHHHhcCCe-ecC-
Confidence 445567779999999999999999999999999999999994 455 33999999987 78999999999987 777
Q ss_pred CCceeeeccCc
Q 013926 85 SSPLQVKYADG 95 (434)
Q Consensus 85 ~~~i~~~~~~~ 95 (434)
+.|+|..+++
T Consensus 78 -R~LKVNKAKP 87 (759)
T PLN03213 78 -GRLRLEKAKE 87 (759)
T ss_pred -ceeEEeeccH
Confidence 6777766653
No 103
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.21 E-value=6.4e-11 Score=101.81 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=63.1
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCceeee
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 91 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~ 91 (434)
..+.+|||+||++.+||+||++||+.||+|.+|.++.+..++ ++|||+|.+.++|..|+ .|+|..+ .+ +.|.+.
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~--gfAfVtF~d~~aaetAl-lLnGa~l-~d--~~I~It 76 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYA--CTAYVTFKDAYALETAV-LLSGATI-VD--QRVCIT 76 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcc--eEEEEEECCHHHHHHHH-hcCCCee-CC--ceEEEE
Confidence 356899999999999999999999999999999999985432 39999999999999998 6788764 44 455554
Q ss_pred c
Q 013926 92 Y 92 (434)
Q Consensus 92 ~ 92 (434)
.
T Consensus 77 ~ 77 (243)
T PLN03121 77 R 77 (243)
T ss_pred e
Confidence 3
No 104
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.5e-11 Score=107.77 Aligned_cols=85 Identities=25% Similarity=0.489 Sum_probs=80.8
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 344 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 344 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
..|+..+|||.-|.+-+|++||.-+|++||.|.+|.|+++.++|.+..||||+|.+.++.++|.=.|++..|.+++|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCC
Q 013926 424 LKRDN 428 (434)
Q Consensus 424 ~a~~~ 428 (434)
|+++-
T Consensus 315 FSQSV 319 (479)
T KOG0415|consen 315 FSQSV 319 (479)
T ss_pred hhhhh
Confidence 98764
No 105
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=3.4e-10 Score=106.03 Aligned_cols=155 Identities=19% Similarity=0.358 Sum_probs=114.4
Q ss_pred ccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCC----CCccc---eEEEEeCCHHHHHHHHHHhccC
Q 013926 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKT----TRASR---CCFVICPSRQEADKAVNACHNK 78 (434)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~----~~~~~---~afV~f~~~~~A~~al~~~~~~ 78 (434)
...+...-+++||||+||++++|+.|...|..||.+. +.+....+ ....+ |+|+.|+++.+++..|..+...
T Consensus 251 ~~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~ 329 (520)
T KOG0129|consen 251 RGYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEG 329 (520)
T ss_pred CCCCccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhc
Confidence 3456677789999999999999999999999999855 44432111 11122 9999999999999999987531
Q ss_pred c---cCCC-----CCCceee-----ecc-----CcccccCCCeEEEeCCCCCCcHHHHHHhhh-ccCCeeEEEEccCC-C
Q 013926 79 K---TLPG-----ASSPLQV-----KYA-----DGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQILRGS-Q 138 (434)
Q Consensus 79 ~---~~~g-----~~~~i~~-----~~~-----~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~-~~G~i~~i~~~~~~-~ 138 (434)
. .++- +.+.+++ ... ....-+..++|||++||..++.++|-.+|+ .||.|.-+-|..|+ -
T Consensus 330 ~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~ 409 (520)
T KOG0129|consen 330 EGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKL 409 (520)
T ss_pred ccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCccc
Confidence 0 0000 0011111 100 011223368999999999999999999998 79999999999995 4
Q ss_pred CCcceEEEEEeCCHHHHHHHHHH
Q 013926 139 QTSKGCAFLKYETKEQALAALEA 161 (434)
Q Consensus 139 ~~~~g~a~V~f~~~~~a~~a~~~ 161 (434)
+-++|.|=|.|.+.....+||..
T Consensus 410 KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 410 KYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCCCcceeeecccHHHHHHHhh
Confidence 55899999999999999999876
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=3e-10 Score=106.41 Aligned_cols=63 Identities=24% Similarity=0.360 Sum_probs=59.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQ-AFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~-~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 409 (434)
+.+||||++||.-++.++|..+|. -||.|..|-|-.|++-+.++|-|.|.|.+..+-.+||.+
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 568999999999999999999999 599999999999988999999999999999999999986
No 107
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.18 E-value=8e-11 Score=97.42 Aligned_cols=81 Identities=31% Similarity=0.420 Sum_probs=74.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcc-CCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAF-GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~f-G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
....++|..+|..+.+.+|..+|..| |.|..+++.+++.+|.++|||||+|.+.+.|.-|.+.||+.-|.|+.|.|++=
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 44579999999999999999999988 78889999999999999999999999999999999999999999999999874
Q ss_pred cC
Q 013926 426 RD 427 (434)
Q Consensus 426 ~~ 427 (434)
..
T Consensus 128 pp 129 (214)
T KOG4208|consen 128 PP 129 (214)
T ss_pred Cc
Confidence 43
No 108
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=2.5e-12 Score=103.62 Aligned_cols=78 Identities=23% Similarity=0.501 Sum_probs=71.3
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCcee
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 89 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~ 89 (434)
-.++.-|||+|||++.||.||..+|++||.|++|.+++|+.||.++ |||+.|+++.+-.-|+..+||.. +.| +.|+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGik-i~g--Rtir 108 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIK-ILG--RTIR 108 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCce-ecc--eeEE
Confidence 4567889999999999999999999999999999999999999999 99999999999999999999987 445 6666
Q ss_pred ee
Q 013926 90 VK 91 (434)
Q Consensus 90 ~~ 91 (434)
|.
T Consensus 109 VD 110 (219)
T KOG0126|consen 109 VD 110 (219)
T ss_pred ee
Confidence 54
No 109
>smart00362 RRM_2 RNA recognition motif.
Probab=99.15 E-value=2.6e-10 Score=81.61 Aligned_cols=67 Identities=40% Similarity=0.767 Sum_probs=61.0
Q ss_pred eEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 013926 103 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 171 (434)
Q Consensus 103 ~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~ 171 (434)
+|+|+|||..+++++|+++|+.||.|..+.+..+. +.++|+|||+|.+.++|+.|++.+++.. ++|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~-~~~~ 67 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTK-LGGR 67 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcE-ECCE
Confidence 58999999999999999999999999999988776 6778999999999999999999999865 5665
No 110
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=7.9e-11 Score=90.17 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=72.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeec
Q 013926 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 92 (434)
Q Consensus 14 ~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~ 92 (434)
+--|||.++-..+||+||.+.|..||+|.++++-.++.|+-.+ ||.|+|.+.++|+.|+..+|+..++ + ..+.|.|
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll-~--q~v~VDw 148 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL-G--QNVSVDW 148 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh-C--CceeEEE
Confidence 3468999999999999999999999999999999999999999 9999999999999999999998855 3 7788887
Q ss_pred cCcc
Q 013926 93 ADGE 96 (434)
Q Consensus 93 ~~~~ 96 (434)
+..+
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 7543
No 111
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.14 E-value=1.3e-10 Score=110.47 Aligned_cols=86 Identities=24% Similarity=0.461 Sum_probs=77.5
Q ss_pred CeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeec
Q 013926 102 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180 (434)
Q Consensus 102 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a 180 (434)
..|||+|+|+++++++|.++|+..|.|..+++..|. +|+++||||++|.+.++|.+|++.||+.. ++|+ +|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~-~~gr--~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAE-FNGR--KLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcc-cCCc--eEEeecc
Confidence 689999999999999999999999999999999997 88999999999999999999999999988 6777 6889988
Q ss_pred cChHHHHHHH
Q 013926 181 DTEKERQARR 190 (434)
Q Consensus 181 ~~~~~~~~~~ 190 (434)
..........
T Consensus 96 ~~~~~~~~~~ 105 (435)
T KOG0108|consen 96 SNRKNAERSL 105 (435)
T ss_pred cccchhHHHH
Confidence 7766554443
No 112
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=1.6e-10 Score=110.22 Aligned_cols=156 Identities=19% Similarity=0.332 Sum_probs=118.4
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
...+++||++||...++..++++...||++....++.+..++.++ |||-+|.+......|++.|||+.+ .+ ..+.+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~l-gd--~~lvv 363 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL-GD--KKLVV 363 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhh-cC--ceeEe
Confidence 345789999999999999999999999999999999999988888 999999999999999999999874 33 22222
Q ss_pred eccCc--c-----------------------cccCCCeEEEeCCC--CCC-c-------HHHHHHhhhccCCeeEEEEcc
Q 013926 91 KYADG--E-----------------------LERLEHKLFIGMLP--KNV-S-------EAEVSALFSIYGTIKDLQILR 135 (434)
Q Consensus 91 ~~~~~--~-----------------------~~~~~~~v~v~nlp--~~~-~-------~~~l~~~f~~~G~i~~i~~~~ 135 (434)
..+-. . ....+..|.+.|+- .++ + .|+++..++.||.|..|.+..
T Consensus 364 q~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr 443 (500)
T KOG0120|consen 364 QRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPR 443 (500)
T ss_pred ehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCC
Confidence 22210 0 00112334444442 111 1 145666778999999999987
Q ss_pred C-CCC---CcceEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 013926 136 G-SQQ---TSKGCAFLKYETKEQALAALEAINGKHKMEGS 171 (434)
Q Consensus 136 ~-~~~---~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~ 171 (434)
. ..+ -..|-.||+|.+.+++++|++.|.|.. |+++
T Consensus 444 ~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrK-F~nR 482 (500)
T KOG0120|consen 444 PYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRK-FANR 482 (500)
T ss_pred CCCCCCcCCCcccEEEEecChHHHHHHHHHccCce-eCCc
Confidence 7 332 245888999999999999999999987 7887
No 113
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.12 E-value=8.8e-09 Score=100.83 Aligned_cols=73 Identities=30% Similarity=0.585 Sum_probs=64.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeecc
Q 013926 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 93 (434)
Q Consensus 14 ~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~ 93 (434)
+++||||+|+..++|.||.++|+.||.|.+|.++..+. ||||.+..-++|.+|+.+|++.. +.. +.|++.|+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~-----cAfI~M~~RqdA~kalqkl~n~k-v~~--k~Iki~Wa 492 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRG-----CAFIKMVRRQDAEKALQKLSNVK-VAD--KTIKIAWA 492 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCc-----eeEEEEeehhHHHHHHHHHhccc-ccc--eeeEEeee
Confidence 58999999999999999999999999999999988766 99999999999999999998654 333 66677776
Q ss_pred C
Q 013926 94 D 94 (434)
Q Consensus 94 ~ 94 (434)
.
T Consensus 493 ~ 493 (894)
T KOG0132|consen 493 V 493 (894)
T ss_pred c
Confidence 5
No 114
>smart00360 RRM RNA recognition motif.
Probab=99.11 E-value=3.6e-10 Score=80.55 Aligned_cols=64 Identities=36% Similarity=0.642 Sum_probs=57.6
Q ss_pred EcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 19 VGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 19 v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
|+|||..+++++|+++|..||.|..+.+..++.++.++ +|||+|.+.++|.+|++.+++.. +.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~-~~~ 65 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKE-LDG 65 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCe-eCC
Confidence 58999999999999999999999999999988777777 99999999999999999998654 444
No 115
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.11 E-value=6.2e-10 Score=104.81 Aligned_cols=88 Identities=25% Similarity=0.512 Sum_probs=79.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
...+++|+|++|...+-..||+.+|++||+|+-++++.+..+--.++||||.+.+.++|.+||..||...|+|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 33568999999999888899999999999999999998876666789999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 013926 425 KRDNKQNK 432 (434)
Q Consensus 425 a~~~~~~~ 432 (434)
+++.+..+
T Consensus 482 aKNEp~Gk 489 (940)
T KOG4661|consen 482 AKNEPGGK 489 (940)
T ss_pred cccCcccc
Confidence 99877654
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=3.8e-10 Score=100.38 Aligned_cols=79 Identities=23% Similarity=0.406 Sum_probs=69.4
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHH-hCCceeCCeEEEE
Q 013926 344 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM-MNGCQLGGKKLKV 422 (434)
Q Consensus 344 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-l~g~~l~g~~i~v 422 (434)
......+|||+||-..+++.+|+++|.+||+|.++.+...+ |+|||+|.+.++|++|... +|...|.|++|+|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 34466899999998899999999999999999999997763 4899999999999998755 4677889999999
Q ss_pred EEecCC
Q 013926 423 QLKRDN 428 (434)
Q Consensus 423 ~~a~~~ 428 (434)
.|++++
T Consensus 298 ~Wg~~~ 303 (377)
T KOG0153|consen 298 KWGRPK 303 (377)
T ss_pred EeCCCc
Confidence 999983
No 117
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.09 E-value=9.3e-10 Score=79.17 Aligned_cols=73 Identities=44% Similarity=0.805 Sum_probs=64.6
Q ss_pred eEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEe
Q 013926 103 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 178 (434)
Q Consensus 103 ~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~ 178 (434)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+.++++|||+|.+.++|..|++.+++.. ++|. .+.+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~-~~~~--~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKE-LGGR--PLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCe-ECCe--EEEEe
Confidence 4899999999999999999999999999999988766778999999999999999999999976 6666 34543
No 118
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=4.8e-10 Score=97.71 Aligned_cols=83 Identities=18% Similarity=0.356 Sum_probs=73.0
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
.....+=++|||+-|+++++|..|+..|..||+|..|.++.++.|++++ ||||+|.++.+...|.+..+|.. +.| +
T Consensus 95 ~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~-Idg--r 171 (335)
T KOG0113|consen 95 NAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK-IDG--R 171 (335)
T ss_pred cccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce-ecC--c
Confidence 3445677999999999999999999999999999999999999999999 99999999999999999998875 666 4
Q ss_pred ceeeecc
Q 013926 87 PLQVKYA 93 (434)
Q Consensus 87 ~i~~~~~ 93 (434)
.|-|.+.
T Consensus 172 ri~VDvE 178 (335)
T KOG0113|consen 172 RILVDVE 178 (335)
T ss_pred EEEEEec
Confidence 4444443
No 119
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.08 E-value=2.4e-10 Score=111.50 Aligned_cols=79 Identities=19% Similarity=0.362 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
..++||||+.|+..++++||.++|+.||+|++|.++.. +|||||.+.++.+|.+|+.+|+...+.++.|+|.||
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 35689999999999999999999999999999988654 679999999999999999999999999999999999
Q ss_pred cCCcC
Q 013926 426 RDNKQ 430 (434)
Q Consensus 426 ~~~~~ 430 (434)
..+..
T Consensus 493 ~g~G~ 497 (894)
T KOG0132|consen 493 VGKGP 497 (894)
T ss_pred ccCCc
Confidence 88753
No 120
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.04 E-value=3.1e-10 Score=93.54 Aligned_cols=80 Identities=29% Similarity=0.425 Sum_probs=71.8
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
.....|.|.||.+-++.++|+.+|++||.|-+|.|..|+-|+.++ ||||.|.+..||+.|++.|+|.. +.| ++|.|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~-ldg--RelrV 87 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAV-LDG--RELRV 87 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhccee-ecc--ceeee
Confidence 345789999999999999999999999999999999999999999 99999999999999999998875 667 66666
Q ss_pred eccC
Q 013926 91 KYAD 94 (434)
Q Consensus 91 ~~~~ 94 (434)
+++.
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 6554
No 121
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=8.8e-11 Score=97.63 Aligned_cols=139 Identities=20% Similarity=0.255 Sum_probs=115.4
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCcee
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 89 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~ 89 (434)
..+..++|||.|+...++|+-|.++|-+.|+|..+.|..++.. +.+||||.|.++.++.-|++.+||..++ + .+++
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~-~~kFa~v~f~~E~sv~~a~~L~ng~~l~-~--~e~q 80 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQ-EQKFAYVFFPNENSVQLAGQLENGDDLE-E--DEEQ 80 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccC-CCceeeeecccccchhhhhhhcccchhc-c--chhh
Confidence 3456799999999999999999999999999999999888764 3449999999999999999999998744 3 3333
Q ss_pred eeccCcccccCCCeEEEeC----CCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 013926 90 VKYADGELERLEHKLFIGM----LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 164 (434)
Q Consensus 90 ~~~~~~~~~~~~~~v~v~n----lp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~ 164 (434)
+. ++.++ |...++.+.++..|+..|+++.+++..+.+|..+.++++.+-.....-.++....+
T Consensus 81 ~~------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~ 147 (267)
T KOG4454|consen 81 RT------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQG 147 (267)
T ss_pred cc------------cccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcc
Confidence 33 33444 67788999999999999999999999999988888999988877777777765554
No 122
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.01 E-value=1.2e-09 Score=95.31 Aligned_cols=81 Identities=23% Similarity=0.390 Sum_probs=75.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..+.|+|.|||+.++++||+++|..||.+..+-+.+++ .|.+.|.|=|.|...++|.+|++.+||..++|+.|++.+..
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 44789999999999999999999999999999998885 89999999999999999999999999999999999988765
Q ss_pred CC
Q 013926 427 DN 428 (434)
Q Consensus 427 ~~ 428 (434)
+.
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 54
No 123
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=4.2e-10 Score=93.57 Aligned_cols=83 Identities=25% Similarity=0.396 Sum_probs=76.3
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
...++|||++|-.+++|.-|...|-.||.|..|.+..|-.+.+++ ||||+|...|||..||..||+.. +.| +.|+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesE-L~G--rtirV 84 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESE-LFG--RTIRV 84 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhh-hcc--eeEEE
Confidence 467899999999999999999999999999999999999999999 99999999999999999999988 556 78888
Q ss_pred eccCccc
Q 013926 91 KYADGEL 97 (434)
Q Consensus 91 ~~~~~~~ 97 (434)
.++.+.+
T Consensus 85 N~AkP~k 91 (298)
T KOG0111|consen 85 NLAKPEK 91 (298)
T ss_pred eecCCcc
Confidence 8887554
No 124
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=7e-10 Score=110.10 Aligned_cols=166 Identities=20% Similarity=0.255 Sum_probs=135.6
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
......+++||++||+..+++.+|+..|..+|.|.+|.|...+....+.||||.|.+...+-+|...+.+..+..| .
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g---~ 442 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG---T 442 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccC---c
Confidence 4456678999999999999999999999999999999987775544455999999999999999988877665444 2
Q ss_pred eeeeccCcccccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCcc
Q 013926 88 LQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 167 (434)
Q Consensus 88 i~~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~ 167 (434)
++..+... .....+.+|+++|...+....|...|..||.|..|.+... ..|+||+|++...++.|+..+.+..
T Consensus 443 ~r~glG~~-kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a~~~~rgap- 515 (975)
T KOG0112|consen 443 HRIGLGQP-KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAATHDMRGAP- 515 (975)
T ss_pred cccccccc-ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhhHHHHhcCc-
Confidence 22222222 3344678999999999999999999999999998877654 3499999999999999999999976
Q ss_pred CCCCcceEEEeeccCh
Q 013926 168 MEGSSVPLVVKWADTE 183 (434)
Q Consensus 168 ~~g~~~~i~v~~a~~~ 183 (434)
+++-...+.|.++...
T Consensus 516 ~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 516 LGGPPRRLRVDLASPP 531 (975)
T ss_pred CCCCCcccccccccCC
Confidence 6776677888888665
No 125
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.94 E-value=3.3e-09 Score=71.92 Aligned_cols=56 Identities=36% Similarity=0.751 Sum_probs=48.0
Q ss_pred HHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeec
Q 013926 118 VSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180 (434)
Q Consensus 118 l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a 180 (434)
|+++|++||.|..+.+..+. +++|||+|.+.++|+.|++.||+.. ++|+ .|.|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~-~~g~--~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQ-FNGR--PLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSE-ETTE--EEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCE-ECCc--EEEEEEC
Confidence 68999999999999998764 4799999999999999999999987 6776 5777764
No 126
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.94 E-value=1.4e-07 Score=91.35 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=67.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEE-EEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS-AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~-v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
.+.+.+|||..||..+++.++.++|..--.|++ +.|.+. .+++-++.|||.|.+++++..|...-+.+.++.|.|+|+
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 444578999999999999999999998777777 666555 488899999999999999999999888889999999987
No 127
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.92 E-value=1.6e-08 Score=86.40 Aligned_cols=83 Identities=34% Similarity=0.488 Sum_probs=77.1
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 344 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 344 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
-......||.+.|..+++++.|-..|.+|-.....++++++.+|+++|||||.|.+..++.+|++.|+|..++.|.|++.
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred Eec
Q 013926 424 LKR 426 (434)
Q Consensus 424 ~a~ 426 (434)
.+.
T Consensus 266 kS~ 268 (290)
T KOG0226|consen 266 KSE 268 (290)
T ss_pred hhh
Confidence 543
No 128
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.84 E-value=1.6e-08 Score=95.68 Aligned_cols=83 Identities=34% Similarity=0.639 Sum_probs=71.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
...+|||+|||.+++..+|.++|..||.|+...|..-...++..+||||.|.+.++++.|+.+ +-..++|++|.|...+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 345699999999999999999999999999988876543455559999999999999999997 7999999999999887
Q ss_pred CCcC
Q 013926 427 DNKQ 430 (434)
Q Consensus 427 ~~~~ 430 (434)
....
T Consensus 366 ~~~~ 369 (419)
T KOG0116|consen 366 PGFR 369 (419)
T ss_pred cccc
Confidence 7543
No 129
>smart00361 RRM_1 RNA recognition motif.
Probab=98.84 E-value=1.3e-08 Score=72.48 Aligned_cols=55 Identities=18% Similarity=0.339 Sum_probs=47.4
Q ss_pred HHHHHHHHh----ccCceeEEE-EeecCCC--Cccc-eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 28 EAQLLAMFK----EFALVDEVN-IIKDKTT--RASR-CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 28 e~~l~~~f~----~~g~v~~~~-~~~~~~~--~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
++||+++|+ .||.|.++. ++.++.+ +.++ +|||+|.+.++|.+|++.|||.. +.|
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~-~~g 64 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRY-FDG 64 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCE-ECC
Confidence 678999998 999999995 6676655 6677 99999999999999999999976 555
No 130
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.82 E-value=3.8e-08 Score=73.39 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=71.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhc--cCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQA--FGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG----GKKLKV 422 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~--fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~----g~~i~v 422 (434)
+||+|+|||...|.++|.+++.. .|....+.++.|..++-..|||||.|.+++.|.+-.+.++|+... .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998855 467788899999889999999999999999999999999999886 467788
Q ss_pred EEecCCc
Q 013926 423 QLKRDNK 429 (434)
Q Consensus 423 ~~a~~~~ 429 (434)
.+|+.+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8887653
No 131
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.79 E-value=2.1e-08 Score=97.23 Aligned_cols=85 Identities=20% Similarity=0.347 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCC---CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKA---TGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 421 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~ 421 (434)
.|..++|||+||+..++++.|...|.+||.|.+++|+.-+. ....+-||||.|.++.+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 55678899999999999999999999999999999997553 234456899999999999999999999999999999
Q ss_pred EEEecCCc
Q 013926 422 VQLKRDNK 429 (434)
Q Consensus 422 v~~a~~~~ 429 (434)
+-|++.-+
T Consensus 251 ~gWgk~V~ 258 (877)
T KOG0151|consen 251 LGWGKAVP 258 (877)
T ss_pred eccccccc
Confidence 99997543
No 132
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.5e-08 Score=90.45 Aligned_cols=83 Identities=18% Similarity=0.318 Sum_probs=72.4
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
...++...|||..|.+.+|.+||.-+|+.||+|.+|.+++++.|+.+. ||||+|.+.+++++|.-+|.+. ++.. +.
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNv-LIDD--rR 310 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNV-LIDD--RR 310 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcce-eecc--ce
Confidence 345788999999999999999999999999999999999999999999 9999999999999999999764 4554 55
Q ss_pred eeeeccC
Q 013926 88 LQVKYAD 94 (434)
Q Consensus 88 i~~~~~~ 94 (434)
|.|.++.
T Consensus 311 IHVDFSQ 317 (479)
T KOG0415|consen 311 IHVDFSQ 317 (479)
T ss_pred EEeehhh
Confidence 5555443
No 133
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.71 E-value=1.1e-08 Score=92.99 Aligned_cols=81 Identities=20% Similarity=0.389 Sum_probs=75.1
Q ss_pred ceEE-EcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 013926 349 ANLF-IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 427 (434)
Q Consensus 349 ~~v~-V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~ 427 (434)
.+++ |.||++++++++|+.+|..+|.|..++++.+..++..+|+|+|.|.+...+.+++.. +...+.++.+++...+.
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 3455 999999999999999999999999999999999999999999999999999999998 89999999999998877
Q ss_pred CcC
Q 013926 428 NKQ 430 (434)
Q Consensus 428 ~~~ 430 (434)
.+.
T Consensus 264 ~~~ 266 (285)
T KOG4210|consen 264 RPK 266 (285)
T ss_pred Ccc
Confidence 643
No 134
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.68 E-value=1.4e-08 Score=101.10 Aligned_cols=158 Identities=23% Similarity=0.349 Sum_probs=126.6
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeec
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a 180 (434)
+++||++||+..+++.+|+..|..+|.|..|.|-...-+.-.-|+||.|-+.+.+-.|...+.+..|..|. +.+.+.
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~---~r~glG 448 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGT---HRIGLG 448 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCc---cccccc
Confidence 56899999999999999999999999999998866654444568999999999998888888776544432 111111
Q ss_pred cChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCCC
Q 013926 181 DTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQG 260 (434)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (434)
..
T Consensus 449 ~~------------------------------------------------------------------------------ 450 (975)
T KOG0112|consen 449 QP------------------------------------------------------------------------------ 450 (975)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 261 NAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSG 340 (434)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (434)
T Consensus 451 -------------------------------------------------------------------------------- 450 (975)
T KOG0112|consen 451 -------------------------------------------------------------------------------- 450 (975)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC--e
Q 013926 341 GQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG--K 418 (434)
Q Consensus 341 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g--~ 418 (434)
.....+.+++++|+.-+....|...|..||.|..+.+-+. --||+|+|.+...|+.|+..|-|.+|+| +
T Consensus 451 ---kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~ 521 (975)
T KOG0112|consen 451 ---KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPR 521 (975)
T ss_pred ---ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCc
Confidence 0114467999999999999999999999999988766433 2389999999999999999999999988 8
Q ss_pred EEEEEEecCC
Q 013926 419 KLKVQLKRDN 428 (434)
Q Consensus 419 ~i~v~~a~~~ 428 (434)
+++|.||..-
T Consensus 522 r~rvdla~~~ 531 (975)
T KOG0112|consen 522 RLRVDLASPP 531 (975)
T ss_pred ccccccccCC
Confidence 8999998754
No 135
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.65 E-value=5.6e-08 Score=85.39 Aligned_cols=86 Identities=21% Similarity=0.325 Sum_probs=79.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
.....+||+|+.+.+|.+++...|+.+|.|..+.|..++..|.++||+||.|.+.+.++.|+. |+|..|.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 355789999999999999999999999999999999999888999999999999999999999 8999999999999998
Q ss_pred cCCcCCC
Q 013926 426 RDNKQNK 432 (434)
Q Consensus 426 ~~~~~~~ 432 (434)
+....+.
T Consensus 178 r~~~pg~ 184 (231)
T KOG4209|consen 178 RTNVPGM 184 (231)
T ss_pred eeecCCc
Confidence 8775443
No 136
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.62 E-value=7.1e-08 Score=82.51 Aligned_cols=152 Identities=18% Similarity=0.352 Sum_probs=110.5
Q ss_pred EEEcCCCCCCCHHH---HHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCceee---
Q 013926 17 LFVGQVPKHMTEAQ---LLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV--- 90 (434)
Q Consensus 17 l~v~nLp~~~te~~---l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~--- 90 (434)
.+++++-.++..+- +-..|+.+-.....++++++......++|+.|.....-.++-..-+++. +.- .+++.
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kk-i~~--~~VR~a~g 175 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKK-IGK--PPVRLAAG 175 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhcccccccc-ccC--cceeeccc
Confidence 34444444433333 2566777766677777777654444499999998888888776655543 221 33333
Q ss_pred -eccCc---ccccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCC
Q 013926 91 -KYADG---ELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGK 165 (434)
Q Consensus 91 -~~~~~---~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~ 165 (434)
.|.++ +....+.+||.+.|..+++.+.|-..|.+|-.-...++++++ +|+++||+||.|.+.+|+.+|+..++|+
T Consensus 176 tswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gk 255 (290)
T KOG0226|consen 176 TSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGK 255 (290)
T ss_pred cccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccc
Confidence 23332 233447899999999999999999999999877788888888 8999999999999999999999999998
Q ss_pred ccCCCCc
Q 013926 166 HKMEGSS 172 (434)
Q Consensus 166 ~~~~g~~ 172 (434)
. .+.+.
T Consensus 256 y-Vgsrp 261 (290)
T KOG0226|consen 256 Y-VGSRP 261 (290)
T ss_pred c-cccch
Confidence 6 66663
No 137
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=1.8e-08 Score=84.11 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
+..+||||.||...++++-|.++|-+-|.|..|.|..++ .++.+ ||||.|.++.+...|++.+||..+.++.+.+.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 356899999999999999999999999999999998885 67777 9999999999999999999999999999998875
Q ss_pred cCC
Q 013926 426 RDN 428 (434)
Q Consensus 426 ~~~ 428 (434)
...
T Consensus 85 ~G~ 87 (267)
T KOG4454|consen 85 CGN 87 (267)
T ss_pred cCC
Confidence 443
No 138
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.61 E-value=1.6e-07 Score=78.12 Aligned_cols=71 Identities=24% Similarity=0.374 Sum_probs=64.3
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhcc-CceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCc
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEF-ALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKK 79 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~-g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~ 79 (434)
.......-+|++.+|.-+.+..+..+|.+| |+|..+.+-+++.||.++ ||||+|++.+.|.-|.+.||+.-
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYL 116 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYL 116 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhh
Confidence 345566789999999999999999999998 788888888999999999 99999999999999999999874
No 139
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=3.5e-09 Score=104.82 Aligned_cols=135 Identities=21% Similarity=0.289 Sum_probs=116.7
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
....++|++||+..+.+.||...|..+|.+..+.+.-.++.+..+ +|||.|...+++.+||...... +.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~--~~g------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC--FFG------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh--hhh-------
Confidence 445789999999999999999999999988888777556667777 9999999999999999875332 222
Q ss_pred eccCcccccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCC
Q 013926 91 KYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165 (434)
Q Consensus 91 ~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~ 165 (434)
...|+|+|.|+..|.++++.++..+|.+....++....|+++|.++|.|.++.++.++....+..
T Consensus 736 ----------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~ 800 (881)
T KOG0128|consen 736 ----------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVA 800 (881)
T ss_pred ----------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhh
Confidence 24699999999999999999999999999999999999999999999999999999998766553
No 140
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.59 E-value=1.4e-07 Score=84.35 Aligned_cols=75 Identities=36% Similarity=0.606 Sum_probs=68.3
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeec
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a 180 (434)
.++|||++|-..+++.+|++.|.+||+|+.|.+... +++|||+|.+.+.|+.|.++.-...+++|. .|.+.|.
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~--Rl~i~Wg 300 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGF--RLKIKWG 300 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecce--EEEEEeC
Confidence 578999999999999999999999999999998865 679999999999999999998888889998 5777799
Q ss_pred cC
Q 013926 181 DT 182 (434)
Q Consensus 181 ~~ 182 (434)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 77
No 141
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.53 E-value=2.5e-07 Score=87.59 Aligned_cols=81 Identities=21% Similarity=0.347 Sum_probs=69.8
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCcee
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 89 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~ 89 (434)
..-++.|||.+|...+--.||+.+|++||.|+..+++.+..+.-.+ |+||++.+.++|.++|+.||... +.| +.|.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTE-LHG--rmIS 478 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTE-LHG--RMIS 478 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhh-hcc--eeee
Confidence 4556899999999999999999999999999999999998877777 99999999999999999998765 555 5555
Q ss_pred eeccC
Q 013926 90 VKYAD 94 (434)
Q Consensus 90 ~~~~~ 94 (434)
|..++
T Consensus 479 VEkaK 483 (940)
T KOG4661|consen 479 VEKAK 483 (940)
T ss_pred eeecc
Confidence 54443
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.50 E-value=4.3e-07 Score=64.21 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=47.3
Q ss_pred ceEEEcCCCCCCCHH----HHHHHhhccC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 349 ANLFIYHIPQEFGDQ----ELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~----~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
..|+|.|||.+.+.. -|+.++..+| .|.+|. .|.|+|.|.+.+.|++|.+.|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999988765 4566666765 677761 2369999999999999999999999999999999
Q ss_pred EecC
Q 013926 424 LKRD 427 (434)
Q Consensus 424 ~a~~ 427 (434)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 9843
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.46 E-value=2.8e-07 Score=83.88 Aligned_cols=166 Identities=16% Similarity=0.241 Sum_probs=124.1
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
...+++|++++.+.+.+.+...++...|.+..+.+........++ ++++.|...+.+..+|....... ..++....-+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~-~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKV-LDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccc-cccccccCcc
Confidence 357899999999999999999999999988888888777777777 99999999999999998753221 2221111111
Q ss_pred ecc------C---cccccCCCeEE-EeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHH
Q 013926 91 KYA------D---GELERLEHKLF-IGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAAL 159 (434)
Q Consensus 91 ~~~------~---~~~~~~~~~v~-v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~ 159 (434)
... . ........+++ +++++..+++++|+..|...|.|..+.+..+. ++..+|++||.|....++..++
T Consensus 165 ~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 165 NTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred cccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 111 1 11112234555 99999999999999999999999999998876 7889999999999999999998
Q ss_pred HHhcCCccCCCCcceEEEeeccC
Q 013926 160 EAINGKHKMEGSSVPLVVKWADT 182 (434)
Q Consensus 160 ~~l~~~~~~~g~~~~i~v~~a~~ 182 (434)
.. .... +.+. ++.+.+...
T Consensus 245 ~~-~~~~-~~~~--~~~~~~~~~ 263 (285)
T KOG4210|consen 245 ND-QTRS-IGGR--PLRLEEDEP 263 (285)
T ss_pred hc-ccCc-ccCc--ccccccCCC
Confidence 75 4433 5555 455555543
No 144
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.46 E-value=3.1e-08 Score=90.38 Aligned_cols=155 Identities=22% Similarity=0.373 Sum_probs=114.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCc-eeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeecc
Q 013926 15 VKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 93 (434)
Q Consensus 15 ~~l~v~nLp~~~te~~l~~~f~~~g~-v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~ 93 (434)
..+|++||.+.++..|+..+|..... ...-.+++ ++|+||.+.+...|.+|++.++++.-+-|....+..+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 47899999999999999999986422 22222222 239999999999999999999998777774333333322
Q ss_pred CcccccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcc
Q 013926 94 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173 (434)
Q Consensus 94 ~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~ 173 (434)
. + ..++++.|+|+|+...|+-|..++..||.++.+........ .-..-|+|.+.+.++-||.++++..+.+-
T Consensus 76 k--k-qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e--tavvnvty~~~~~~~~ai~kl~g~Q~en~--- 147 (584)
T KOG2193|consen 76 K--K-QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE--TAVVNVTYSAQQQHRQAIHKLNGPQLENQ--- 147 (584)
T ss_pred H--H-HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH--HHHHHHHHHHHHHHHHHHHhhcchHhhhh---
Confidence 2 2 22466999999999999999999999999998865433211 23456788999999999999999875432
Q ss_pred eEEEeeccCh
Q 013926 174 PLVVKWADTE 183 (434)
Q Consensus 174 ~i~v~~a~~~ 183 (434)
.+++.|-...
T Consensus 148 ~~k~~YiPde 157 (584)
T KOG2193|consen 148 HLKVGYIPDE 157 (584)
T ss_pred hhhcccCchh
Confidence 3566665443
No 145
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=1.3e-07 Score=89.82 Aligned_cols=71 Identities=20% Similarity=0.425 Sum_probs=64.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 421 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~ 421 (434)
.+..+|+|-|||..++.++|+.+|+.||+|..|+.... .+|..||.|.+.-+|++|+++|++.++.|++|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 35578999999999999999999999999999766444 467899999999999999999999999999988
No 146
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.42 E-value=5e-05 Score=68.18 Aligned_cols=81 Identities=21% Similarity=0.369 Sum_probs=64.1
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccC--CeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEE
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYG--TIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 177 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G--~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v 177 (434)
..++||+||-+.+|.+||.+.+...| .+.+++++.+. .|.++|||+|-..+....++.++-|-.+. +.|.. +...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~-iHGQ~-P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKT-IHGQS-PTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccce-ecCCC-Ceee
Confidence 46899999999999999999998877 46677777766 78999999999999999999999998877 44442 3444
Q ss_pred eeccCh
Q 013926 178 KWADTE 183 (434)
Q Consensus 178 ~~a~~~ 183 (434)
.+-...
T Consensus 158 ~~NK~~ 163 (498)
T KOG4849|consen 158 SYNKTN 163 (498)
T ss_pred ccchhh
Confidence 444333
No 147
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.39 E-value=1.3e-06 Score=76.61 Aligned_cols=78 Identities=22% Similarity=0.411 Sum_probs=69.8
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeec
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a 180 (434)
..+|+|.|||+.++.+||+++|..||.+..+.+-.+..|.+.|.|-|.|...+||..|++.+++. .++|.. |.+...
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv-~ldG~~--mk~~~i 159 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGV-ALDGRP--MKIEII 159 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCc-ccCCce--eeeEEe
Confidence 46799999999999999999999999999999999999999999999999999999999999994 488884 555444
Q ss_pred c
Q 013926 181 D 181 (434)
Q Consensus 181 ~ 181 (434)
.
T Consensus 160 ~ 160 (243)
T KOG0533|consen 160 S 160 (243)
T ss_pred c
Confidence 3
No 148
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.37 E-value=5e-07 Score=69.25 Aligned_cols=71 Identities=21% Similarity=0.427 Sum_probs=44.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCC-----ceeCCeEEEE
Q 013926 348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG-----CQLGGKKLKV 422 (434)
Q Consensus 348 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-----~~l~g~~i~v 422 (434)
++.|+|.+++..++.++|++.|+.||.|.+|.+..... .|+|.|.+++.|++|+..+.- ..+.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 36799999999999999999999999999998865532 589999999999999987753 3556665555
Q ss_pred EE
Q 013926 423 QL 424 (434)
Q Consensus 423 ~~ 424 (434)
.+
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 43
No 149
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.35 E-value=2.7e-07 Score=83.64 Aligned_cols=64 Identities=16% Similarity=0.076 Sum_probs=53.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC
Q 013926 348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 416 (434)
Q Consensus 348 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~ 416 (434)
.+|++|.+|+..|-..++.+.|..+|+|.+.+..- |.-.-+|.|.|....+...|+.. +|..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 37899999999999999999999999999987743 22344788999999999999986 777665
No 150
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.35 E-value=8.4e-07 Score=84.16 Aligned_cols=75 Identities=21% Similarity=0.335 Sum_probs=60.1
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
+.........|||+|||.++++.+|+++|+.||.|+...|......+... ||||+|.+.++++.||.+- ...+++
T Consensus 281 ~~~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As--p~~ig~ 356 (419)
T KOG0116|consen 281 NQEPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS--PLEIGG 356 (419)
T ss_pred CcceeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC--ccccCC
Confidence 34444555669999999999999999999999999998877655334444 9999999999999999983 433444
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.13 E-value=4.1e-06 Score=81.78 Aligned_cols=80 Identities=24% Similarity=0.447 Sum_probs=66.5
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCC---Cccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASR-CCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~---~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
+..+..|||+||++.++|++|...|..||+|..++++..+.. .+.+ |+||.|.+-.||++|++.|+|..++ + .
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~-~--~ 247 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM-E--Y 247 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee-e--e
Confidence 567789999999999999999999999999999999976632 3334 9999999999999999999987543 3 4
Q ss_pred ceeeecc
Q 013926 87 PLQVKYA 93 (434)
Q Consensus 87 ~i~~~~~ 93 (434)
++++.|.
T Consensus 248 e~K~gWg 254 (877)
T KOG0151|consen 248 EMKLGWG 254 (877)
T ss_pred eeeeccc
Confidence 5555555
No 152
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.09 E-value=4.4e-06 Score=75.61 Aligned_cols=83 Identities=28% Similarity=0.488 Sum_probs=76.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLS--------AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK 418 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~ 418 (434)
...+|||-+||..+++++|.++|.+.|.|.. ++|-++++++++||-|.|.|.+...|+.|+.-++++.+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4568999999999999999999999998843 67778889999999999999999999999999999999999
Q ss_pred EEEEEEecCCc
Q 013926 419 KLKVQLKRDNK 429 (434)
Q Consensus 419 ~i~v~~a~~~~ 429 (434)
.|+|.+|..+.
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999988765
No 153
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.04 E-value=5.4e-05 Score=56.64 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=54.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcc--CceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCc
Q 013926 15 VKLFVGQVPKHMTEAQLLAMFKEF--ALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKK 79 (434)
Q Consensus 15 ~~l~v~nLp~~~te~~l~~~f~~~--g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~ 79 (434)
++|+|+|||...|.++|.+++... |...=+-+..|-.++.+. ||||.|.+.++|.+..+.++|..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~ 69 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKK 69 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCc
Confidence 689999999999999999999753 444445555666677777 99999999999999999999876
No 154
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.00 E-value=1.1e-06 Score=80.54 Aligned_cols=150 Identities=25% Similarity=0.389 Sum_probs=116.4
Q ss_pred CeEEEeCCCCCCcHHHHHHhhhccC-CeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeec
Q 013926 102 HKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180 (434)
Q Consensus 102 ~~v~v~nlp~~~~~~~l~~~f~~~G-~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a 180 (434)
.++|++||.+..+..+|..+|.... ....-.+++ .||+||...+..-|.+|++.++++.-+.|. .+.+...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGk--r~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGK--RQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCc--eeeccch
Confidence 3689999999999999999998763 222223332 579999999999999999999998777776 4555555
Q ss_pred cChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCCC
Q 013926 181 DTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQG 260 (434)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (434)
.++..+
T Consensus 74 v~kkqr-------------------------------------------------------------------------- 79 (584)
T KOG2193|consen 74 VPKKQR-------------------------------------------------------------------------- 79 (584)
T ss_pred hhHHHH--------------------------------------------------------------------------
Confidence 443322
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 261 NAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSG 340 (434)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (434)
T Consensus 80 -------------------------------------------------------------------------------- 79 (584)
T KOG2193|consen 80 -------------------------------------------------------------------------------- 79 (584)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEE-EecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 013926 341 GQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKV-FVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 419 (434)
Q Consensus 341 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~ 419 (434)
++.+-|+|+|...-++-|..+...||.|..+.. ..+.++ -..-|+|.+.+.++.|+..|||..+.+..
T Consensus 80 -------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~ 148 (584)
T KOG2193|consen 80 -------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQH 148 (584)
T ss_pred -------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhh
Confidence 123779999999999999999999999999854 333322 12347899999999999999999999988
Q ss_pred EEEEE
Q 013926 420 LKVQL 424 (434)
Q Consensus 420 i~v~~ 424 (434)
+++.+
T Consensus 149 ~k~~Y 153 (584)
T KOG2193|consen 149 LKVGY 153 (584)
T ss_pred hhccc
Confidence 88765
No 155
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.99 E-value=9.2e-06 Score=71.52 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=68.1
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
+...+.+.+.+||+|+.+.+|.+++...|+.||.|..+.+.+++.++..+ ||||+|.+.+.+.+++. |++.. +.+
T Consensus 94 ~~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~-i~~ 169 (231)
T KOG4209|consen 94 ERQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSE-IPG 169 (231)
T ss_pred hhhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcc-ccc
Confidence 35677889999999999999999999999999999999999999988888 99999999999999999 77765 555
No 156
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.0001 Score=70.44 Aligned_cols=77 Identities=23% Similarity=0.322 Sum_probs=63.4
Q ss_pred CCceEEEcCCCCCCC------HHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCcee-CCeE
Q 013926 347 PGANLFIYHIPQEFG------DQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL-GGKK 419 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t------~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l-~g~~ 419 (434)
-..+|+|.|+|.--. ..-|..+|+++|+|+...++.+. .|.++||.|++|++..+|+.|++.|||+.| .+++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 456799999985321 13567899999999999999886 455999999999999999999999999998 4567
Q ss_pred EEEEE
Q 013926 420 LKVQL 424 (434)
Q Consensus 420 i~v~~ 424 (434)
..|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 77654
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.75 E-value=8.1e-05 Score=49.18 Aligned_cols=52 Identities=19% Similarity=0.397 Sum_probs=42.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHH
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 407 (434)
+.|-|.+.+.+.. +++..+|..||+|....+.... -+.+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 4688999886653 6677799999999999886322 27999999999999985
No 158
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.75 E-value=0.00015 Score=51.49 Aligned_cols=70 Identities=19% Similarity=0.350 Sum_probs=45.0
Q ss_pred CeEEEeCCCCCCcHHHHHHh----hhccC-CeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEE
Q 013926 102 HKLFIGMLPKNVSEAEVSAL----FSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 176 (434)
Q Consensus 102 ~~v~v~nlp~~~~~~~l~~~----f~~~G-~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~ 176 (434)
..|+|.|||.+.+...|+.- +...| .|..|. .+.|+|.|.+.+.|.+|.+.++|..+++.. |.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~k---I~ 70 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNK---IS 70 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS-----E
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccce---EE
Confidence 35899999999988766554 44554 666552 358999999999999999999998866544 88
Q ss_pred EeeccCh
Q 013926 177 VKWADTE 183 (434)
Q Consensus 177 v~~a~~~ 183 (434)
+.+....
T Consensus 71 v~~~~~~ 77 (90)
T PF11608_consen 71 VSFSPKN 77 (90)
T ss_dssp EESS--S
T ss_pred EEEcCCc
Confidence 8887444
No 159
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.75 E-value=1.6e-05 Score=68.44 Aligned_cols=71 Identities=21% Similarity=0.365 Sum_probs=61.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCC--------CCeee----EEEEEeCCHHHHHHHHHHhCCceeC
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT--------GVSKC----FGFVSYESPASAQNAIAMMNGCQLG 416 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~--------g~~~g----~afV~f~~~~~A~~A~~~l~g~~l~ 416 (434)
-+||++|||.......|+++|+.||.|=+|.+-..... |..++ -|+|+|.+-..|.++...||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 47999999999999999999999999999988765443 22222 2899999999999999999999999
Q ss_pred CeE
Q 013926 417 GKK 419 (434)
Q Consensus 417 g~~ 419 (434)
|++
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 974
No 160
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.75 E-value=7.7e-05 Score=57.22 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=39.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccC
Q 013926 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNK 78 (434)
Q Consensus 15 ~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~ 78 (434)
+.|.|.++...++-++|+++|+.||.|.-|.+..... -|||.|.+.++|++|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~-----~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT-----EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S-----EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC-----EEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999888777655433 7999999999999999987543
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.63 E-value=0.00013 Score=65.25 Aligned_cols=80 Identities=21% Similarity=0.412 Sum_probs=61.5
Q ss_pred ceEEEcCCCCCCCHHH----H--HHHhhccCCeEEEEEEecCCC-CCeee-E-EEEEeCCHHHHHHHHHHhCCceeCCeE
Q 013926 349 ANLFIYHIPQEFGDQE----L--GNAFQAFGRVLSAKVFVDKAT-GVSKC-F-GFVSYESPASAQNAIAMMNGCQLGGKK 419 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~----L--~~~F~~fG~v~~v~i~~~~~~-g~~~g-~-afV~f~~~~~A~~A~~~l~g~~l~g~~ 419 (434)
.-|||-+||..+-.|+ | .++|.+||.|..+.|-+.-.. .-..+ + .+|.|.+.|||.+|+...+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4589999998876555 2 589999999999877443211 11122 2 399999999999999999999999999
Q ss_pred EEEEEecCC
Q 013926 420 LKVQLKRDN 428 (434)
Q Consensus 420 i~v~~a~~~ 428 (434)
|+..+.-.|
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999886554
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.55 E-value=0.00021 Score=47.17 Aligned_cols=52 Identities=21% Similarity=0.402 Sum_probs=42.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHH
Q 013926 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAV 72 (434)
Q Consensus 15 ~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al 72 (434)
+.|-|.+.+.+..+. |..+|..||.|..+.+-...+ .+||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~-----~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTN-----WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCc-----EEEEEECCHHHHHhhC
Confidence 567889998887755 666999999999987752222 8999999999999985
No 163
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.53 E-value=0.00053 Score=54.86 Aligned_cols=74 Identities=30% Similarity=0.510 Sum_probs=53.4
Q ss_pred cCCCCceEEEcCCC----C-CCCH----HHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCce
Q 013926 344 EGPPGANLFIYHIP----Q-EFGD----QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ 414 (434)
Q Consensus 344 ~~~~~~~v~V~nLp----~-~~t~----~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 414 (434)
.+|+..||.|+=+. . ..-. .+|.+.|..||+|+=+++.-+ .-+|.|.+-+.|.+|+. |+|..
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~ 93 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQ 93 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcE
Confidence 35566777776554 1 1222 378888999999998888654 27999999999999999 69999
Q ss_pred eCCeEEEEEEec
Q 013926 415 LGGKKLKVQLKR 426 (434)
Q Consensus 415 l~g~~i~v~~a~ 426 (434)
++|+.|+|++.-
T Consensus 94 v~g~~l~i~LKt 105 (146)
T PF08952_consen 94 VNGRTLKIRLKT 105 (146)
T ss_dssp ETTEEEEEEE--
T ss_pred ECCEEEEEEeCC
Confidence 999999999853
No 164
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.51 E-value=0.0006 Score=51.43 Aligned_cols=71 Identities=21% Similarity=0.375 Sum_probs=50.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeEEEE-------------EEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCce
Q 013926 348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAK-------------VFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ 414 (434)
Q Consensus 348 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~-------------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 414 (434)
.+.|.|-+.|.. ....+.+.|++||+|.+.. +... ..+--|+|.++.+|++||+. ||..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~------~NWi~I~Y~~~~~A~rAL~~-NG~i 77 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSG------GNWIHITYDNPLSAQRALQK-NGTI 77 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CC------TTEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCC------CCEEEEECCCHHHHHHHHHh-CCeE
Confidence 356888899887 4567889999999998874 2222 23789999999999999997 9999
Q ss_pred eCCeE-EEEEEec
Q 013926 415 LGGKK-LKVQLKR 426 (434)
Q Consensus 415 l~g~~-i~v~~a~ 426 (434)
|.|.- +-|.+.+
T Consensus 78 ~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 78 FSGSLMVGVKPCD 90 (100)
T ss_dssp ETTCEEEEEEE-H
T ss_pred EcCcEEEEEEEcH
Confidence 99864 4466553
No 165
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.50 E-value=5.9e-05 Score=68.84 Aligned_cols=143 Identities=15% Similarity=0.186 Sum_probs=100.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCC---c-cceEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTR---A-SRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 15 ~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~---~-~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
..|.|.||.+.+|.++++.+|...|.|.++.++.+.... . .+.|||.|.+...+..|-..-| ..++.. ..|.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtn-tvfvdr--aliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTN-TVFVDR--ALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhcc-ceeeee--eEEEE
Confidence 389999999999999999999999999999998754321 1 2289999999999988855432 221211 11111
Q ss_pred eccCcc--------------------------------------------------------cccCCCeEEEeCCCCCCc
Q 013926 91 KYADGE--------------------------------------------------------LERLEHKLFIGMLPKNVS 114 (434)
Q Consensus 91 ~~~~~~--------------------------------------------------------~~~~~~~v~v~nlp~~~~ 114 (434)
-+.+.. .+...++++|.+|+..|.
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 111100 001135689999999999
Q ss_pred HHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 013926 115 EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 163 (434)
Q Consensus 115 ~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~ 163 (434)
..++.++|..+|.|...++-... ...+|-+.|.......-|+...+
T Consensus 165 l~e~~e~f~r~Gev~ya~~ask~---~s~~c~~sf~~qts~~halr~~g 210 (479)
T KOG4676|consen 165 LPESGESFERKGEVSYAHTASKS---RSSSCSHSFRKQTSSKHALRSHG 210 (479)
T ss_pred chhhhhhhhhcchhhhhhhhccC---CCcchhhhHhhhhhHHHHHHhcc
Confidence 99999999999998876664332 23477789988777777776443
No 166
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.46 E-value=4.9e-05 Score=65.79 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=53.5
Q ss_pred HHHHHHhh-ccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 363 QELGNAFQ-AFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 363 ~~L~~~F~-~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
|||.+.|+ +||+|..+.|-.+. .-...|-++|.|...++|++|++.||+..+.|++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 67777777 89999999776554 33457889999999999999999999999999999988753
No 167
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.40 E-value=0.00045 Score=60.82 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=60.9
Q ss_pred CCceEEEcCC--CCCCCH---HHHHHHhhccCCeEEEEEEecCCCCCeee-EEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 013926 347 PGANLFIYHI--PQEFGD---QELGNAFQAFGRVLSAKVFVDKATGVSKC-FGFVSYESPASAQNAIAMMNGCQLGGKKL 420 (434)
Q Consensus 347 ~~~~v~V~nL--p~~~t~---~~L~~~F~~fG~v~~v~i~~~~~~g~~~g-~afV~f~~~~~A~~A~~~l~g~~l~g~~i 420 (434)
+.++|.++|+ +..+++ +++++-+++||.|..|.|...+..-...- --||+|.+.++|.+|+-.|||+.|+||.+
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 3455777877 344543 58899999999999998876642111111 15999999999999999999999999999
Q ss_pred EEEEec
Q 013926 421 KVQLKR 426 (434)
Q Consensus 421 ~v~~a~ 426 (434)
+-.|-+
T Consensus 360 ~A~Fyn 365 (378)
T KOG1996|consen 360 SACFYN 365 (378)
T ss_pred eheecc
Confidence 877654
No 168
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.27 E-value=0.00025 Score=65.71 Aligned_cols=65 Identities=22% Similarity=0.408 Sum_probs=55.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEec---CC--CCCe--------eeEEEEEeCCHHHHHHHHHHhC
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVD---KA--TGVS--------KCFGFVSYESPASAQNAIAMMN 411 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~---~~--~g~~--------~g~afV~f~~~~~A~~A~~~l~ 411 (434)
++++|.+.|||.+-.-|.|.++|+.+|.|..|+|..- +. .+.+ +-+|+|+|.+.+.|.+|.+.|+
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 6799999999999888999999999999999999765 22 2222 3458999999999999999885
No 169
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.13 E-value=0.0015 Score=56.65 Aligned_cols=64 Identities=25% Similarity=0.341 Sum_probs=57.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCc
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC 413 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 413 (434)
..|+|.||...++.+.|.+-|+.||.|.+..+..| ..+++.+-++|.|...-.|.+|+...+-.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccC
Confidence 35999999999999999999999999999877777 47899999999999999999999987533
No 170
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.10 E-value=0.0015 Score=58.62 Aligned_cols=79 Identities=23% Similarity=0.505 Sum_probs=59.0
Q ss_pred CeEEEeCCCCCCcHHH----H--HHhhhccCCeeEEEEccCC-C---CCcceEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 013926 102 HKLFIGMLPKNVSEAE----V--SALFSIYGTIKDLQILRGS-Q---QTSKGCAFLKYETKEQALAALEAINGKHKMEGS 171 (434)
Q Consensus 102 ~~v~v~nlp~~~~~~~----l--~~~f~~~G~i~~i~~~~~~-~---~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~ 171 (434)
.-|||-+|++.+-.|+ | .++|.+||.|..|.+.+.- . ..+.--.||+|.+.|||.+||...+|.. ++|+
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~-~DGr 193 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL-LDGR 193 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc-ccCc
Confidence 4589999998876665 2 4899999999999886543 1 1111224999999999999999999975 8888
Q ss_pred cceEEEeeccCh
Q 013926 172 SVPLVVKWADTE 183 (434)
Q Consensus 172 ~~~i~v~~a~~~ 183 (434)
.|+..+...+
T Consensus 194 --~lkatYGTTK 203 (480)
T COG5175 194 --VLKATYGTTK 203 (480)
T ss_pred --eEeeecCchH
Confidence 4666666443
No 171
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.09 E-value=0.00043 Score=62.33 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=64.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 013926 348 GANLFIYHIPQEFGDQELGNAFQAFG--RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 419 (434)
Q Consensus 348 ~~~v~V~nLp~~~t~~~L~~~F~~fG--~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~ 419 (434)
.-++||+||-.-+|++||.+.....| .+.++++..++.+|++||||+|...+..+..+.++.|-.+.|+|..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 35699999999999999999998877 5677888899999999999999999999999999999999999963
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0013 Score=63.27 Aligned_cols=74 Identities=19% Similarity=0.322 Sum_probs=61.2
Q ss_pred cCCCeEEEeCCCCC--Cc----HHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCc
Q 013926 99 RLEHKLFIGMLPKN--VS----EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 172 (434)
Q Consensus 99 ~~~~~v~v~nlp~~--~~----~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~ 172 (434)
..+.+|.|.|+|.- .. ..-|.++|+++|++....++.+..|..+|+.|++|.+..+|+.|++.|||..+...++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 34678999999852 22 2356689999999999999988877789999999999999999999999998665553
No 173
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.91 E-value=0.004 Score=44.38 Aligned_cols=59 Identities=20% Similarity=0.366 Sum_probs=45.0
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhc
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~ 76 (434)
........+|. .|......||.++|+.||.|. |.++.+. -|||...+.+.|..++..++
T Consensus 5 ~P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 5 QPSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp --SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT------EEEEEECCCHHHHHHHHHHT
T ss_pred CCCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC------cEEEEeecHHHHHHHHHHhc
Confidence 34455667776 999999999999999999966 7777764 59999999999999998874
No 174
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.87 E-value=0.0026 Score=55.25 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=72.4
Q ss_pred HHHHHHHhccCccCCCCCCceeeeccCcccccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEE
Q 013926 68 ADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFL 147 (434)
Q Consensus 68 A~~al~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V 147 (434)
|..|-..|.+. +..+ +.+++.++-. ..|+|.||..-++.+.+...|+.||+|+...+.-|..++..+.++|
T Consensus 7 ae~ak~eLd~~-~~~~--~~lr~rfa~~------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v 77 (275)
T KOG0115|consen 7 AEIAKRELDGR-FPKG--RSLRVRFAMH------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIV 77 (275)
T ss_pred HHHHHHhcCCC-CCCC--CceEEEeecc------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchh
Confidence 44444555444 3555 6677777653 3699999999999999999999999999888888888888999999
Q ss_pred EeCCHHHHHHHHHHhcCC
Q 013926 148 KYETKEQALAALEAINGK 165 (434)
Q Consensus 148 ~f~~~~~a~~a~~~l~~~ 165 (434)
.|...-.+.+|+..++..
T Consensus 78 ~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 78 EFAKKPNARKAARRCREG 95 (275)
T ss_pred hhhcchhHHHHHHHhccC
Confidence 999999999999988644
No 175
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.86 E-value=0.0013 Score=61.12 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=59.7
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeec---CC---CCc-------cc-eEEEEeCCHHHHHHHHH
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKD---KT---TRA-------SR-CCFVICPSRQEADKAVN 73 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~---~~---~~~-------~~-~afV~f~~~~~A~~al~ 73 (434)
..++-++++|.+.|||.+-..+.|.++|..+|.|..|.|.+. .. ... .+ +|+|+|...+.|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 344568999999999999999999999999999999998876 21 111 25 89999999999999999
Q ss_pred HhccCc
Q 013926 74 ACHNKK 79 (434)
Q Consensus 74 ~~~~~~ 79 (434)
.++...
T Consensus 305 ~~~~e~ 310 (484)
T KOG1855|consen 305 LLNPEQ 310 (484)
T ss_pred hhchhh
Confidence 986543
No 176
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.86 E-value=0.0071 Score=40.93 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=46.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcc----CceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHh
Q 013926 14 RVKLFVGQVPKHMTEAQLLAMFKEF----ALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75 (434)
Q Consensus 14 ~~~l~v~nLp~~~te~~l~~~f~~~----g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~ 75 (434)
-.+|+|+|+ .+++-+||+.+|..| ++ ..|.++.|.. |=|.|.+.+.|.+||..|
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~-~~IEWIdDtS------cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGP-FRIEWIDDTS------CNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCC-ceEEEecCCc------EEEEECCHHHHHHHHHcC
Confidence 357999999 478889999999999 65 6799998864 889999999999999764
No 177
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.84 E-value=0.0018 Score=59.07 Aligned_cols=82 Identities=21% Similarity=0.315 Sum_probs=70.0
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCceeE--------EEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCcc
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--------VNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKT 80 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~ 80 (434)
......+|||-+||..+++.+|.++|.++|.|.. |++.+++.|.+.+ -|.|.|.+...|+.|+..++++.
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd- 140 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD- 140 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc-
Confidence 3566789999999999999999999999986543 7788899999999 99999999999999999998887
Q ss_pred CCCCCCceeeeccC
Q 013926 81 LPGASSPLQVKYAD 94 (434)
Q Consensus 81 ~~g~~~~i~~~~~~ 94 (434)
+++ ..|+|..+.
T Consensus 141 f~g--n~ikvs~a~ 152 (351)
T KOG1995|consen 141 FCG--NTIKVSLAE 152 (351)
T ss_pred ccC--CCchhhhhh
Confidence 555 556665554
No 178
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.82 E-value=0.006 Score=48.11 Aligned_cols=74 Identities=15% Similarity=0.334 Sum_probs=55.3
Q ss_pred CCCCceEEEcCCCCCC-CHHH---HHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 013926 345 GPPGANLFIYHIPQEF-GDQE---LGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 420 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~-t~~~---L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i 420 (434)
.++=.||.|+=|..++ ..+| +...++.||.|.+|-+ +|+. -|.|.|.+..+|.+|+.+++. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-----cGrq--savVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-----CGRQ--SAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-----cCCc--eEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 3455678887666554 2344 4555688999999977 3322 499999999999999999865 7788888
Q ss_pred EEEEec
Q 013926 421 KVQLKR 426 (434)
Q Consensus 421 ~v~~a~ 426 (434)
.++|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 888754
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.79 E-value=0.0043 Score=46.84 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=49.4
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecC-------CCCccc-eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDK-------TTRASR-CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~-------~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
...+.|.|-+.|+. ....|.+.|++||.|.+..-.... .....+ +..|+|.+..+|++||+. +..++.|
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~--NG~i~~g 80 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK--NGTIFSG 80 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT--TTEEETT
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh--CCeEEcC
Confidence 45667899999988 667799999999998877500000 001112 899999999999999987 4444554
Q ss_pred CCCceeeeccC
Q 013926 84 ASSPLQVKYAD 94 (434)
Q Consensus 84 ~~~~i~~~~~~ 94 (434)
. ..+.|.+.+
T Consensus 81 ~-~mvGV~~~~ 90 (100)
T PF05172_consen 81 S-LMVGVKPCD 90 (100)
T ss_dssp C-EEEEEEE-H
T ss_pred c-EEEEEEEcH
Confidence 2 335555554
No 180
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.69 E-value=0.0016 Score=56.48 Aligned_cols=70 Identities=14% Similarity=0.269 Sum_probs=59.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCC---------Cccc----eEEEEeCCHHHHHHHHHHhccCc
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---------RASR----CCFVICPSRQEADKAVNACHNKK 79 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~---------~~~~----~afV~f~~~~~A~~al~~~~~~~ 79 (434)
....||+++||+.+...-|+++|+.||.|-.|.+-....+ +..+ -|+|+|.+...|+.....||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5688999999999999999999999999998888765544 2222 36999999999999999999987
Q ss_pred cCCC
Q 013926 80 TLPG 83 (434)
Q Consensus 80 ~~~g 83 (434)
++|
T Consensus 153 -Igg 155 (278)
T KOG3152|consen 153 -IGG 155 (278)
T ss_pred -cCC
Confidence 555
No 181
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.61 E-value=0.0074 Score=60.97 Aligned_cols=75 Identities=20% Similarity=0.251 Sum_probs=64.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCcee--CCeEEEEEEec
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL--GGKKLKVQLKR 426 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l--~g~~i~v~~a~ 426 (434)
...++.|.+-..+---|..+|++||.|.+++.+++-. .|.|.|.+.+.|..|+.+|+|+.+ -|-+.+|.+|+
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 4466777777788889999999999999999988753 599999999999999999999976 67889999998
Q ss_pred CCc
Q 013926 427 DNK 429 (434)
Q Consensus 427 ~~~ 429 (434)
.-+
T Consensus 373 ~~~ 375 (1007)
T KOG4574|consen 373 TLP 375 (1007)
T ss_pred ccc
Confidence 654
No 182
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.57 E-value=0.013 Score=39.70 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=44.3
Q ss_pred CeEEEeCCCCCCcHHHHHHhhhcc---CCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 013926 102 HKLFIGMLPKNVSEAEVSALFSIY---GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 162 (434)
Q Consensus 102 ~~v~v~nlp~~~~~~~l~~~f~~~---G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l 162 (434)
..|+|+|+. +++-++|+.+|..| .....|.++.|. .|-|-|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 469999997 68888999999999 124578888763 7899999999999999754
No 183
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.50 E-value=0.0019 Score=56.22 Aligned_cols=63 Identities=24% Similarity=0.430 Sum_probs=50.0
Q ss_pred HHHHHhhh-ccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeecc
Q 013926 116 AEVSALFS-IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 181 (434)
Q Consensus 116 ~~l~~~f~-~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~ 181 (434)
++|...|+ +||+|+++.+..+....-.|-+||.|..+++|++|++.||+.. ++|.. |...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw-~~G~p--i~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRW-YNGRP--IHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcc-ccCCc--ceeeecC
Confidence 45555666 8999999988776554567899999999999999999999987 88884 5555543
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.46 E-value=0.022 Score=40.74 Aligned_cols=56 Identities=21% Similarity=0.478 Sum_probs=42.7
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 164 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~ 164 (434)
+...+|+ +|..|...||.++|+.||.|. |.++.+ ..|||...+.+.|..++..++.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT------TEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC------CcEEEEeecHHHHHHHHHHhcc
Confidence 3455665 999999999999999999976 666654 2899999999999999988764
No 185
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.02 E-value=0.011 Score=57.38 Aligned_cols=82 Identities=16% Similarity=0.257 Sum_probs=65.4
Q ss_pred cCCCeEEEeCCCCCCcHHHHHHhhhcc-CCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEE
Q 013926 99 RLEHKLFIGMLPKNVSEAEVSALFSIY-GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 177 (434)
Q Consensus 99 ~~~~~v~v~nlp~~~~~~~l~~~f~~~-G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v 177 (434)
..++.|+|.||-...|.-+|++++..- |.|+..+|.+- +..|||.|.+.++|...+..|+|..--.+....|.+
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI-----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI-----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh-----hcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 346789999999999999999999854 46666655433 669999999999999999999998744555567888
Q ss_pred eeccChHH
Q 013926 178 KWADTEKE 185 (434)
Q Consensus 178 ~~a~~~~~ 185 (434)
.|......
T Consensus 517 df~~~del 524 (718)
T KOG2416|consen 517 DFVRADEL 524 (718)
T ss_pred eecchhHH
Confidence 88865543
No 186
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.81 E-value=0.0084 Score=58.22 Aligned_cols=65 Identities=26% Similarity=0.277 Sum_probs=55.5
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHh-ccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCc
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFK-EFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKK 79 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~-~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~ 79 (434)
....++.|||.||-.-+|...|++++. ..|.|++.+|-+-+. .|||.|.+.++|..-+.+|||..
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKS-----hCyV~yss~eEA~atr~AlhnV~ 505 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKS-----HCYVSYSSVEEAAATREALHNVQ 505 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhc-----ceeEecccHHHHHHHHHHHhccc
Confidence 456789999999999999999999998 566777776555443 89999999999999999999865
No 187
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.79 E-value=0.033 Score=47.29 Aligned_cols=63 Identities=25% Similarity=0.334 Sum_probs=47.3
Q ss_pred CHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEEecCCc
Q 013926 361 GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN--GCQLGGKKLKVQLKRDNK 429 (434)
Q Consensus 361 t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~--g~~l~g~~i~v~~a~~~~ 429 (434)
..+.|+++|..|+.+....+++.- + -..|.|.+.++|.+|...|+ +..+.|..++|.+++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF--r----Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF--R----RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT--T----EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC--C----EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 358899999999999988777652 2 47999999999999999999 999999999999996544
No 188
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.51 E-value=0.017 Score=48.92 Aligned_cols=71 Identities=8% Similarity=0.116 Sum_probs=45.3
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhc-cCce---eEEEE-eecCCCCccc--eEEEEeCCHHHHHHHHHHhccCccC
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKE-FALV---DEVNI-IKDKTTRASR--CCFVICPSRQEADKAVNACHNKKTL 81 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~-~g~v---~~~~~-~~~~~~~~~~--~afV~f~~~~~A~~al~~~~~~~~~ 81 (434)
+....+|.||+||+.+||+++.+.++. ++.- ..+.- .......... -|||.|.+.+++....+.++|....
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 456679999999999999999997776 5544 22221 1222223333 7899999999999999998886543
No 189
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.40 E-value=0.084 Score=36.40 Aligned_cols=55 Identities=7% Similarity=0.244 Sum_probs=44.8
Q ss_pred CCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 013926 359 EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 422 (434)
Q Consensus 359 ~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v 422 (434)
.++-+||+..+.+|+- . +|..++ +|| ||.|.+..+|+++....+|..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4788999999999943 3 444453 445 99999999999999999999999988765
No 190
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.34 E-value=0.44 Score=46.41 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=55.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhc--cCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQA--FGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN--GCQLGGKKLK 421 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~--fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~--g~~l~g~~i~ 421 (434)
..|.|.|+-||..+..|+++.+|.. +-++++|.+..+. + =||.|.+..||+.|.++|. -+.|.|+.|.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~--n-----WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND--N-----WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC--c-----eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 4578899999999999999999976 7788999887663 1 4999999999999998874 3455666553
No 191
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.13 E-value=0.23 Score=38.25 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=44.7
Q ss_pred CCceEEEcCCCCC-CCHHHHHHHHhccC-ceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCc
Q 013926 13 ERVKLFVGQVPKH-MTEAQLLAMFKEFA-LVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKK 79 (434)
Q Consensus 13 ~~~~l~v~nLp~~-~te~~l~~~f~~~g-~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~ 79 (434)
.+..|.+=-.|+. ++-++|..+...+- .|..++++++. ..++ .+.++|.+.++|......+||+.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~ 78 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKP 78 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCc
Confidence 3344444444544 55555655555543 46677777763 3466 88999999999999999999986
No 192
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.04 E-value=0.0077 Score=54.71 Aligned_cols=81 Identities=19% Similarity=0.395 Sum_probs=61.9
Q ss_pred ceEEEcCCCCCCCHHHH---HHHhhccCCeEEEEEEecCC--CCCe-eeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 013926 349 ANLFIYHIPQEFGDQEL---GNAFQAFGRVLSAKVFVDKA--TGVS-KCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 422 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L---~~~F~~fG~v~~v~i~~~~~--~g~~-~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v 422 (434)
.-+||-+|+...-.+++ .++|.+||.|.+|.+..+.. .+.. ..-++|.|...++|.+|+..-+|..+.|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 34888899877654443 46899999999998877652 1111 112799999999999999999999999999888
Q ss_pred EEecCCc
Q 013926 423 QLKRDNK 429 (434)
Q Consensus 423 ~~a~~~~ 429 (434)
.++-.+.
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 8776553
No 193
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.97 E-value=0.069 Score=47.46 Aligned_cols=56 Identities=20% Similarity=0.165 Sum_probs=46.9
Q ss_pred CHHHHHHHHhccCceeEEEEeecCCCCccc--eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 27 TEAQLLAMFKEFALVDEVNIIKDKTTRASR--CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 27 te~~l~~~f~~~g~v~~~~~~~~~~~~~~~--~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
-|+++++-+.+||.|.+|.++....-.... -.||+|...++|.+|+-.|||+- ++|
T Consensus 299 lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy-FGG 356 (378)
T KOG1996|consen 299 LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY-FGG 356 (378)
T ss_pred HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce-ecc
Confidence 356778889999999999999887654444 57999999999999999999874 777
No 194
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.93 E-value=0.04 Score=54.55 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=61.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
+.-+|||+|+...+..+-++......|.|.+++... |||..|....-+.+|+..++...++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 556899999999999999999999999999987643 799999999999999999999999998876654
No 195
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.78 E-value=0.12 Score=50.06 Aligned_cols=60 Identities=15% Similarity=0.265 Sum_probs=50.1
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhc--cCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhc
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKE--FALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~--~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~ 76 (434)
....|-|.|+-||..+-+++|+.+|+. +-++.+|.+-.+.+ =||.|++..||+.|.+.|.
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n------WyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN------WYITFESDTDAQQAYKYLR 233 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc------eEEEeecchhHHHHHHHHH
Confidence 344456678999999999999999985 77888998876654 5999999999999998765
No 196
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.50 E-value=0.098 Score=44.33 Aligned_cols=83 Identities=11% Similarity=0.162 Sum_probs=51.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhc-cCCe---EEEEEEecC-CCCC-eeeEEEEEeCCHHHHHHHHHHhCCceeCC---
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQA-FGRV---LSAKVFVDK-ATGV-SKCFGFVSYESPASAQNAIAMMNGCQLGG--- 417 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~-fG~v---~~v~i~~~~-~~g~-~~g~afV~f~~~~~A~~A~~~l~g~~l~g--- 417 (434)
....|.|++||.+.|++++.+.++. +++- .++.-.... .... ...-|+|.|.+.++...-...++|+.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4467999999999999999998776 7766 344311221 1111 23458999999999999999999987754
Q ss_pred --eEEEEEEecCCc
Q 013926 418 --KKLKVQLKRDNK 429 (434)
Q Consensus 418 --~~i~v~~a~~~~ 429 (434)
.+-.|.+|--++
T Consensus 86 ~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 86 NEYPAVVEFAPYQK 99 (176)
T ss_dssp -EEEEEEEE-SS--
T ss_pred CCcceeEEEcchhc
Confidence 344566654433
No 197
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.38 E-value=0.55 Score=36.23 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=50.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 417 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g 417 (434)
..+.+-..|.-++.++|..+.+.+- .|..++|+++.. ..+-.+.++|.+.++|..-....||+.+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444555566677788877666654 566788888742 345568999999999999999999998866
No 198
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.06 E-value=0.043 Score=40.18 Aligned_cols=66 Identities=9% Similarity=0.117 Sum_probs=44.0
Q ss_pred EEEEeCCHHHHHHHHHHhccCccCCCCCCceeeeccC--------cccccCCCeEEEeCCCCCCcHHHHHHhhh
Q 013926 58 CFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYAD--------GELERLEHKLFIGMLPKNVSEAEVSALFS 123 (434)
Q Consensus 58 afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~~--------~~~~~~~~~v~v~nlp~~~~~~~l~~~f~ 123 (434)
|.|+|.+..-|++.++.-....-+.+....++++... .......++|.|+|||...++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999998844333333322333332221 11123368999999999999999987654
No 199
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.97 E-value=0.3 Score=34.75 Aligned_cols=67 Identities=22% Similarity=0.354 Sum_probs=39.5
Q ss_pred eEEEcCC-CCCCCHHHHHHHhhccCC-----eEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 350 NLFIYHI-PQEFGDQELGNAFQAFGR-----VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 350 ~v~V~nL-p~~~t~~~L~~~F~~fG~-----v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
++||.-= -..++..+|..+++.-+. |-++.|..+ |+||+-... .|..+++.|++..+.|++|+|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 4555321 246889999999988754 455666433 789988765 7888999999999999999998
Q ss_pred Ee
Q 013926 424 LK 425 (434)
Q Consensus 424 ~a 425 (434)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 76
No 200
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.86 E-value=0.32 Score=38.64 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=49.0
Q ss_pred ccCccCCceEEEcCCCCC----CCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhcc
Q 013926 8 KKSSEERVKLFVGQVPKH----MTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHN 77 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~----~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~ 77 (434)
...+.+-.+|.|+=|... -+...|...++.||+|.++...... -|.|.|.+..+|=+|+.+++.
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq------savVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ------SAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc------eEEEEehhhHHHHHHHHhhcC
Confidence 345778888888665544 4455566777889999998764322 699999999999999999865
No 201
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.70 E-value=0.036 Score=52.57 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=61.5
Q ss_pred CCceEEEcCCCCCC-CHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 347 PGANLFIYHIPQEF-GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 347 ~~~~v~V~nLp~~~-t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
..+.+-+.-.|+.. |.++|...|.+||+|..+.+-.... -|.|.|.+..+|-+|-+. ++..|.||-|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhcc-ccceecCceeEEEEe
Confidence 44667777777765 6799999999999999988755422 489999999999888874 899999999999997
Q ss_pred cC
Q 013926 426 RD 427 (434)
Q Consensus 426 ~~ 427 (434)
+.
T Consensus 444 np 445 (526)
T KOG2135|consen 444 NP 445 (526)
T ss_pred cC
Confidence 76
No 202
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.63 E-value=0.13 Score=46.07 Aligned_cols=64 Identities=22% Similarity=0.330 Sum_probs=49.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 420 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i 420 (434)
.=|.|-+.|..- ..-|..+|++||+|++.... . +| -|-.|.|.+.-+|++|+.+ ||+.|+|-.+
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~-~--ng---NwMhirYssr~~A~KALsk-ng~ii~g~vm 261 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP-S--NG---NWMHIRYSSRTHAQKALSK-NGTIIDGDVM 261 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecC-C--CC---ceEEEEecchhHHHHhhhh-cCeeeccceE
Confidence 346666887654 34677899999999986554 2 22 2889999999999999997 9999998654
No 203
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.59 E-value=0.13 Score=41.37 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=43.7
Q ss_pred ccCCceEEEcCCC------CCCCH---HHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccC
Q 013926 11 SEERVKLFVGQVP------KHMTE---AQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTL 81 (434)
Q Consensus 11 ~~~~~~l~v~nLp------~~~te---~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~ 81 (434)
.++..+|.|.=+. ...++ .+|.+.|..||.|.-++++.+ .-+|.|.+.++|.+|++. +|.+ +
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals~-dg~~-v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALSL-DGIQ-V 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHHG-CCSE-E
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHcc-CCcE-E
Confidence 4566677776655 12332 367788889999988887765 479999999999999876 3544 6
Q ss_pred CCC
Q 013926 82 PGA 84 (434)
Q Consensus 82 ~g~ 84 (434)
+|.
T Consensus 95 ~g~ 97 (146)
T PF08952_consen 95 NGR 97 (146)
T ss_dssp TTE
T ss_pred CCE
Confidence 673
No 204
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.58 E-value=0.41 Score=43.01 Aligned_cols=62 Identities=19% Similarity=0.179 Sum_probs=47.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
...=|-|-+.|+... ..|..+|.+||.|++...- .++ +-+|+|.+..+|++||.+ +..++.|
T Consensus 196 ~D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk--ng~ii~g 258 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK--NGTIIDG 258 (350)
T ss_pred ccceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh--cCeeecc
Confidence 356677778887655 4588899999998875543 333 999999999999999988 4455554
No 205
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.86 E-value=0.86 Score=46.84 Aligned_cols=72 Identities=26% Similarity=0.386 Sum_probs=55.4
Q ss_pred EEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeeccC
Q 013926 105 FIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 182 (434)
Q Consensus 105 ~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~~ 182 (434)
.+.|.+-..+-.-|..+|++||.|..++..++ -..|.|.|.+.+.|..|++.|.|+.+. -...+.+|.+|..
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs-~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVS-VTGAPSRVSFAKT 373 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCccc-ccCCceeEEeccc
Confidence 33444556667789999999999999998877 458999999999999999999998643 2223567777744
No 206
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.02 E-value=0.1 Score=47.61 Aligned_cols=78 Identities=19% Similarity=0.390 Sum_probs=55.9
Q ss_pred CeEEEeCCCCCCcHHHHH---HhhhccCCeeEEEEccCCC--C--CcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcce
Q 013926 102 HKLFIGMLPKNVSEAEVS---ALFSIYGTIKDLQILRGSQ--Q--TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVP 174 (434)
Q Consensus 102 ~~v~v~nlp~~~~~~~l~---~~f~~~G~i~~i~~~~~~~--~--~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~ 174 (434)
.-+|+-+|+.....+++. +.|.+||.|..|.+.++.. . ...-.+||+|+..|+|..||..++|.. ++|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~-~dg~~-- 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFV-DDGRA-- 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHH-hhhhh--
Confidence 447788888777655554 6899999999998887652 1 122347999999999999999999864 66663
Q ss_pred EEEeeccC
Q 013926 175 LVVKWADT 182 (434)
Q Consensus 175 i~v~~a~~ 182 (434)
++..+..+
T Consensus 155 lka~~gtt 162 (327)
T KOG2068|consen 155 LKASLGTT 162 (327)
T ss_pred hHHhhCCC
Confidence 34444433
No 207
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.01 E-value=0.86 Score=43.39 Aligned_cols=65 Identities=22% Similarity=0.364 Sum_probs=56.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccC-ceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCc
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKK 79 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~~g-~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~ 79 (434)
+++.|.|=.+|-.++..||..|...+- .|.+++++++. -.++ .+.|+|.+.++|..+-..+||+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~ 139 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQ 139 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCc
Confidence 389999999999999999999998653 58899999953 3456 88999999999999999999986
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.62 E-value=0.78 Score=43.66 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=57.0
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccC-CeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCcc
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 167 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G-~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~ 167 (434)
+..|+|-.+|..++-.||..|...+- .|..|++++|.... +-.++|.|++.++|....+.+||+.+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn-rymvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN-RYMVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc-eEEEEEEeccchhHHHHHHHcCCCcC
Confidence 67899999999999999999998764 68899999965443 45789999999999999999999974
No 209
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.87 E-value=3.7 Score=40.58 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=63.1
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhhcc----CCeEEEEEEecCCCC--------------------------------
Q 013926 345 GPPGANLFIYHIPQE-FGDQELGNAFQAF----GRVLSAKVFVDKATG-------------------------------- 387 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~-~t~~~L~~~F~~f----G~v~~v~i~~~~~~g-------------------------------- 387 (434)
+...++|-|.||..+ +..+||.-+|+.| |.|.+|.|.... .|
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe-FGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE-FGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh-hhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 445678999999975 7899999999887 689999987532 11
Q ss_pred ----------------CeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 388 ----------------VSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 388 ----------------~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
..--||+|.|.+.+.|...-....|..+...-.++.+
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 1124799999999999999999999999886666554
No 210
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=83.77 E-value=0.39 Score=35.19 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=21.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhc
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQA 371 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~ 371 (434)
..++|.|+|||...++++|++..+-
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~LeI 75 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLEI 75 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEEE
Confidence 5578999999999999999887643
No 211
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=83.76 E-value=0.9 Score=37.78 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=56.5
Q ss_pred CCceEEEcCCCCCCC--H---HHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 013926 347 PGANLFIYHIPQEFG--D---QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK-KL 420 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t--~---~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~-~i 420 (434)
-.+++.+.+++.++- . .....+|..|.+..-..+++. .+.-.|.|.+++.|..|...+++..|.|+ .+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 345688888887642 2 345566776666655555443 33578999999999999999999999998 89
Q ss_pred EEEEecCC
Q 013926 421 KVQLKRDN 428 (434)
Q Consensus 421 ~v~~a~~~ 428 (434)
++.+|+..
T Consensus 83 k~yfaQ~~ 90 (193)
T KOG4019|consen 83 KLYFAQPG 90 (193)
T ss_pred EEEEccCC
Confidence 99888764
No 212
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=82.05 E-value=2.7 Score=35.81 Aligned_cols=59 Identities=25% Similarity=0.345 Sum_probs=41.6
Q ss_pred cHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhc--CCccCCCCcceEEEeec
Q 013926 114 SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN--GKHKMEGSSVPLVVKWA 180 (434)
Q Consensus 114 ~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~--~~~~~~g~~~~i~v~~a 180 (434)
..+.|+++|..++.+..+..++. -+-..|.|.+.++|.+|...|+ +.. +.|.. +.+.++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~-~~g~~--l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTS-FNGKR--LRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSE-ETTEE---EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccc-cCCCc--eEEEEc
Confidence 45789999999998877776654 4578999999999999999988 665 56653 566666
No 213
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=81.28 E-value=1.2 Score=36.90 Aligned_cols=68 Identities=9% Similarity=-0.010 Sum_probs=49.9
Q ss_pred ccccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCC--CccceEEEEeCCHHHHHHHHHHh
Q 013926 4 SKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT--RASRCCFVICPSRQEADKAVNAC 75 (434)
Q Consensus 4 ~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~--~~~~~afV~f~~~~~A~~al~~~ 75 (434)
..++.......+++|.. |.+...++|.++-+ |.+.++.+.+.... ...+-.||.|.+.++|...++.-
T Consensus 101 vt~e~~~~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 101 VTDEYKEGIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred ccHHHHHHHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 34455566667888888 66666677777666 78899988776654 33337799999999999988773
No 214
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=80.38 E-value=8 Score=26.70 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCcc
Q 013926 25 HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKT 80 (434)
Q Consensus 25 ~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~ 80 (434)
.++-+|++.-++.|+- ..| +.++. --||.|.+..+|+++....++..+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d~t-----GfYIvF~~~~Ea~rC~~~~~~~~~ 58 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDDRT-----GFYIVFNDSKEAERCFRAEDGTLF 58 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--EecCC-----EEEEEECChHHHHHHHHhcCCCEE
Confidence 5788999999999985 333 34433 369999999999999999887653
No 215
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=78.83 E-value=3.2 Score=32.40 Aligned_cols=53 Identities=23% Similarity=0.309 Sum_probs=31.2
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHH
Q 013926 350 NLFIYHIPQE---------FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 405 (434)
Q Consensus 350 ~v~V~nLp~~---------~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 405 (434)
++.|-|++.. .+.++|.+.|+.|..+ +++.+.++ .-+.|+++|.|...-..-+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~--~gh~g~aiv~F~~~w~Gf~ 71 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGK--QGHTGFAIVEFNKDWSGFK 71 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEET--TEEEEEEEEE--SSHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCC--CCCcEEEEEEECCChHHHH
Confidence 5778888543 3568999999999876 46677774 3579999999987654443
No 216
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=78.57 E-value=1.1 Score=42.82 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=51.6
Q ss_pred ceEEEcCCCCC-CCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeecc
Q 013926 15 VKLFVGQVPKH-MTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 93 (434)
Q Consensus 15 ~~l~v~nLp~~-~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~ 93 (434)
+.|-+.-.|+. -|..+|...|.+||.|++|.+-.... .|.|+|.+..+|-+|-.. ...++.+ +.|++.|.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~-----~a~vTF~t~aeag~a~~s--~~avlnn--r~iKl~wh 443 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL-----HAVVTFKTRAEAGEAYAS--HGAVLNN--RFIKLFWH 443 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCchh-----hheeeeeccccccchhcc--ccceecC--ceeEEEEe
Confidence 34444444543 47789999999999999999755422 799999999999777544 2334666 66666666
Q ss_pred Ccc
Q 013926 94 DGE 96 (434)
Q Consensus 94 ~~~ 96 (434)
++.
T Consensus 444 nps 446 (526)
T KOG2135|consen 444 NPS 446 (526)
T ss_pred cCC
Confidence 643
No 217
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=76.61 E-value=17 Score=25.71 Aligned_cols=58 Identities=22% Similarity=0.374 Sum_probs=33.9
Q ss_pred CCCcHHHHHHhhhccCC-----eeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEee
Q 013926 111 KNVSEAEVSALFSIYGT-----IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 179 (434)
Q Consensus 111 ~~~~~~~l~~~f~~~G~-----i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~ 179 (434)
..++..+|..++...+. |-.|.+..+ |+||+-.. +.|..++..|++.. +.|+. +.++.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~-~~gk~--v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKK-IKGKK--VRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT---SSS------EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCC-CCCee--EEEEE
Confidence 45788889888877654 346777644 88999886 58889999999877 67774 45543
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.57 E-value=13 Score=36.95 Aligned_cols=82 Identities=20% Similarity=0.277 Sum_probs=61.2
Q ss_pred cCCCeEEEeCCCCC-CcHHHHHHhhhcc----CCeeEEEEccCC-----------CC-----------------------
Q 013926 99 RLEHKLFIGMLPKN-VSEAEVSALFSIY----GTIKDLQILRGS-----------QQ----------------------- 139 (434)
Q Consensus 99 ~~~~~v~v~nlp~~-~~~~~l~~~f~~~----G~i~~i~~~~~~-----------~~----------------------- 139 (434)
..+++|-|-||.++ +..++|.-+|..| |.|..|.|.... .|
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 34678999999986 6788999999877 578888764321 11
Q ss_pred --------------CcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeecc
Q 013926 140 --------------TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 181 (434)
Q Consensus 140 --------------~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~ 181 (434)
....||.|.|.+.+.|....+.|+|.. +......|.++|..
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~E-fEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIE-FESSANKLDLRFIP 306 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcce-eccccceeeeeecC
Confidence 112689999999999999999999987 55555566666653
No 219
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=73.49 E-value=6.5 Score=27.35 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=48.7
Q ss_pred HHHHHHhhccC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCCc
Q 013926 363 QELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDNK 429 (434)
Q Consensus 363 ~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~~~ 429 (434)
++|.+-|...| .|..++-+.++.++.+.-.-||..+...+ ..+.++=..|+|.+|+|...+.+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCCCC
Confidence 57888888877 78888888887677777777888887665 334566778899999998776554
No 220
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=72.19 E-value=57 Score=34.06 Aligned_cols=7 Identities=0% Similarity=0.121 Sum_probs=3.7
Q ss_pred ceEEEcC
Q 013926 349 ANLFIYH 355 (434)
Q Consensus 349 ~~v~V~n 355 (434)
.+.||+-
T Consensus 642 ~cFWvkv 648 (1102)
T KOG1924|consen 642 NCFWVKV 648 (1102)
T ss_pred cceeeec
Confidence 3466654
No 221
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=69.07 E-value=12 Score=33.88 Aligned_cols=61 Identities=11% Similarity=0.275 Sum_probs=49.7
Q ss_pred cCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC--------CCCcceEEEEEeCCHHHHHHHH
Q 013926 99 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS--------QQTSKGCAFLKYETKEQALAAL 159 (434)
Q Consensus 99 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~--------~~~~~g~a~V~f~~~~~a~~a~ 159 (434)
..++.|.+.|+..+++...+..-|-.||+|+.|.++.+. ..+......+.|-+.+.|-...
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHH
Confidence 346789999999999999999999999999999998765 2234467899999998887553
No 222
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=69.06 E-value=8.9 Score=34.71 Aligned_cols=148 Identities=15% Similarity=0.263 Sum_probs=91.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecC--------CCCccceEEEEeCCHHHHHHHHHH----hcc-Cc
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDK--------TTRASRCCFVICPSRQEADKAVNA----CHN-KK 79 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~--------~~~~~~~afV~f~~~~~A~~al~~----~~~-~~ 79 (434)
.+|.|.+.|+-.+++-..+..-|-+||+|++|.++.+. ....+....+.|-+.+.+...-.. |.. +.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999876 222233789999999887665432 110 00
Q ss_pred cCCCCCCceeee-----ccCcc----------------------cccCCCeEEEeCCCCCCcHHHHH----HhhhccC--
Q 013926 80 TLPGASSPLQVK-----YADGE----------------------LERLEHKLFIGMLPKNVSEAEVS----ALFSIYG-- 126 (434)
Q Consensus 80 ~~~g~~~~i~~~-----~~~~~----------------------~~~~~~~v~v~nlp~~~~~~~l~----~~f~~~G-- 126 (434)
-+.- ..+.+. +.... ....++.|.|. +..++..+++. .++..=+
T Consensus 94 ~L~S--~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~ 170 (309)
T PF10567_consen 94 KLKS--ESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNK 170 (309)
T ss_pred hcCC--cceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCc
Confidence 0111 111111 11100 01225666664 23444344332 2332223
Q ss_pred --CeeEEEEccCC---CCCcceEEEEEeCCHHHHHHHHHHhc
Q 013926 127 --TIKDLQILRGS---QQTSKGCAFLKYETKEQALAALEAIN 163 (434)
Q Consensus 127 --~i~~i~~~~~~---~~~~~g~a~V~f~~~~~a~~a~~~l~ 163 (434)
.++.|.++... ...++.||.+.|=+..-|.+.++-+.
T Consensus 171 RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 171 RYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred eEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 35667665443 33477899999999999999988776
No 223
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=68.12 E-value=23 Score=25.29 Aligned_cols=57 Identities=12% Similarity=0.288 Sum_probs=42.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 013926 351 LFIYHIPQEFGDQELGNAFQA-FG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410 (434)
Q Consensus 351 v~V~nLp~~~t~~~L~~~F~~-fG-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 410 (434)
-|+-.++.+.+..+|+..++. || +|.+|..+.-+ .+..+ |||.+..-++|......+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~~~KK--A~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-RGEKK--AYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CCceE--EEEEECCCCcHHHHHHhh
Confidence 455566889999999999977 77 67888776664 33333 999999988888765543
No 224
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.62 E-value=11 Score=35.57 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=46.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCc-eeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHh
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~~g~-v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~ 75 (434)
--+.|-|.++|....-+||..+|+.|+. -..|+++-+. .||-.|.+...|..||-.-
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt~k 447 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALTLK 447 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhhcc
Confidence 4467889999999999999999999974 3456665554 7999999999999998663
No 225
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=64.11 E-value=16 Score=24.78 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=17.0
Q ss_pred HHHHHHHhccCceeEEEEeecCCCC
Q 013926 29 AQLLAMFKEFALVDEVNIIKDKTTR 53 (434)
Q Consensus 29 ~~l~~~f~~~g~v~~~~~~~~~~~~ 53 (434)
.+|+++|+.+|.|. +..+....+.
T Consensus 9 ~~iR~~fs~lG~I~-vLYvn~~eS~ 32 (62)
T PF15513_consen 9 AEIRQFFSQLGEIA-VLYVNPYESD 32 (62)
T ss_pred HHHHHHHHhcCcEE-EEEEcccccC
Confidence 67999999999977 4444444333
No 226
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=63.57 E-value=30 Score=25.19 Aligned_cols=57 Identities=12% Similarity=0.288 Sum_probs=42.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 013926 351 LFIYHIPQEFGDQELGNAFQA-FG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 410 (434)
Q Consensus 351 v~V~nLp~~~t~~~L~~~F~~-fG-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 410 (434)
-|.--.+.+++..+|++.++. || .|.+|..+..+ .+..+ |+|.+...++|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~~KK--A~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KGEKK--AYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CCcEE--EEEEeCCCCcHHHHHHhh
Confidence 344445778999999999987 77 68888877664 33333 999999999888776543
No 227
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=62.83 E-value=1.2e+02 Score=27.61 Aligned_cols=52 Identities=6% Similarity=0.095 Sum_probs=37.0
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCH
Q 013926 344 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESP 400 (434)
Q Consensus 344 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~ 400 (434)
..+..+-|++.||+.++-..||+..+..-|-+ -.+|.... +.|-||+.|.+.
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg----~~~k~flh~~~~ 377 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKG----HFGKCFLHFGNR 377 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCCC-ceeEeeec----CCcceeEecCCc
Confidence 34445669999999999999999998876543 22344432 355699999764
No 228
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=62.71 E-value=16 Score=29.77 Aligned_cols=106 Identities=18% Similarity=0.130 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHhc-cCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeecc-Ccc-----
Q 013926 24 KHMTEAQLLAMFKE-FALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA-DGE----- 96 (434)
Q Consensus 24 ~~~te~~l~~~f~~-~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~-~~~----- 96 (434)
...+...|...+.. ++....+.+..-.. ++..++|.+.+++.++++. +...+.+....+. .+. ...
T Consensus 27 ~~~~~~~l~~~l~~~W~~~~~~~i~~l~~----~~fl~~F~~~~d~~~vl~~--~p~~~~~~~~~l~-~W~~~~~~~~~~ 99 (153)
T PF14111_consen 27 KPISLSALEQELAKIWKLKGGVKIRDLGD----NLFLFQFESEEDRQRVLKG--GPWNFNGHFLILQ-RWSPDFNPSEVK 99 (153)
T ss_pred CCCCHHHHHHHHHHHhCCCCcEEEEEeCC----CeEEEEEEeccceeEEEec--ccccccccchhhh-hhcccccccccc
Confidence 34667777777754 34332333333211 1789999999999999886 4443444222221 111 111
Q ss_pred cccCCCeEEEeCCCCC-CcHHHHHHhhhccCCeeEEEEccC
Q 013926 97 LERLEHKLFIGMLPKN-VSEAEVSALFSIYGTIKDLQILRG 136 (434)
Q Consensus 97 ~~~~~~~v~v~nlp~~-~~~~~l~~~f~~~G~i~~i~~~~~ 136 (434)
......-|.|.|||.. ++++-++++.+.+|.+..+.....
T Consensus 100 ~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 100 FEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred eeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 1111334667799988 577888899999999887766543
No 229
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=60.27 E-value=16 Score=32.85 Aligned_cols=46 Identities=9% Similarity=0.184 Sum_probs=36.4
Q ss_pred CeEEEeCCCCCCcHHHHHHhhhccCCe-eEEEEccCCCCCcceEEEEEeCCH
Q 013926 102 HKLFIGMLPKNVSEAEVSALFSIYGTI-KDLQILRGSQQTSKGCAFLKYETK 152 (434)
Q Consensus 102 ~~v~v~nlp~~~~~~~l~~~f~~~G~i-~~i~~~~~~~~~~~g~a~V~f~~~ 152 (434)
.-|+++||+.++...||+..+...+.+ ..+.+-- ..|-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg-----~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG-----HFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeec-----CCcceeEecCCc
Confidence 459999999999999999999988743 4555532 367899999874
No 230
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=60.01 E-value=1.3 Score=43.39 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=54.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK 418 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~ 418 (434)
..|+++++|++.+++..+|..+|..+--+.++.+........-.-+++|.|.-.-.-.-|+.+||+..+...
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 358899999999999999999999998888876643322222334689999877777778888887766543
No 231
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=58.95 E-value=18 Score=25.06 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=45.2
Q ss_pred HHHHHHhhccC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCCc
Q 013926 363 QELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDNK 429 (434)
Q Consensus 363 ~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~~~ 429 (434)
.+|.+-|...| .+..++-+..+.++.+--.=+|......+-.. .|+=+.|+|++|.|.-...+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~~ 66 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKRK 66 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcccC
Confidence 46788888888 78889888887666565566777765433222 566778899998887655443
No 232
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=56.81 E-value=7.4 Score=39.23 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=52.5
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccC
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNK 78 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~ 78 (434)
-.+.-++||+|+-..+..+-++.....+|.|.+++.++ |+|..|....-..+|+..++-.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~ 96 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTEL 96 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhccc
Confidence 45677899999999999999999999999988877655 8999999999999999987643
No 233
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.13 E-value=37 Score=32.22 Aligned_cols=60 Identities=23% Similarity=0.340 Sum_probs=45.7
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013926 344 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409 (434)
Q Consensus 344 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 409 (434)
+..-.++|-|.|+|...-.+||...|+.|++- .++|.+-..+ .||-.|.+...|..|+..
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~k-gfdIkWvDdt-----halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNK-GFDIKWVDDT-----HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcC-CceeEEeecc-----eeEEeecchHHHHHHhhc
Confidence 34456899999999998889999999999752 2333332223 589999999999999885
No 234
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.36 E-value=2.1 Score=40.69 Aligned_cols=79 Identities=4% Similarity=-0.130 Sum_probs=65.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 428 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~~ 428 (434)
...++..+|...++.++.-+|+.||.|..+.+.+.-..|...-.+||.-.+. +|..++..+.-..+.|.++++.++++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcCchh
Confidence 4567888999999999999999999999998877766777777788877654 577788888888889999998888754
No 235
>PF14893 PNMA: PNMA
Probab=55.08 E-value=12 Score=35.08 Aligned_cols=54 Identities=11% Similarity=0.274 Sum_probs=33.9
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhc-cCceeEEEEeec--CCCCccceEEEEeCCH
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKE-FALVDEVNIIKD--KTTRASRCCFVICPSR 65 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~-~g~v~~~~~~~~--~~~~~~~~afV~f~~~ 65 (434)
...+.|.|.+||.+|++.+|.+.+.. +-+.-.+.+... +.....+.|+|+|...
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 34678999999999999999998864 222222322221 1112233788888754
No 236
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=52.10 E-value=19 Score=30.13 Aligned_cols=59 Identities=20% Similarity=0.284 Sum_probs=43.3
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCC--CcceEEEEEeCCHHHHHHHHHHhc
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ--TSKGCAFLKYETKEQALAALEAIN 163 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~--~~~g~a~V~f~~~~~a~~a~~~l~ 163 (434)
.++++.. +.+...++|.++-+ |.+..+.+.+...+ ..+|..||+|.+.+.|.+.++.-.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhh
Confidence 4567766 44555566666666 78888888766544 678999999999999999876543
No 237
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=47.54 E-value=62 Score=23.61 Aligned_cols=55 Identities=7% Similarity=0.172 Sum_probs=40.3
Q ss_pred EeCCCCCCcHHHHHHhhhc-cC-CeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 013926 106 IGMLPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 162 (434)
Q Consensus 106 v~nlp~~~~~~~l~~~f~~-~G-~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l 162 (434)
.=..+..++..+|++.++. || .|..|.......+ ..-|||++...++|...-.++
T Consensus 25 ~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 25 TFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHHHhh
Confidence 3356788999999999986 66 6777766554433 347999999988888775443
No 238
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=46.19 E-value=19 Score=31.57 Aligned_cols=36 Identities=31% Similarity=0.387 Sum_probs=30.7
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeE
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE 43 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~ 43 (434)
.....+..+||+-|+|..+|++.|..+.+.+|-+..
T Consensus 34 ~s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 34 HSNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred ccccccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 355677899999999999999999999999985443
No 239
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=45.67 E-value=93 Score=21.01 Aligned_cols=50 Identities=10% Similarity=0.064 Sum_probs=33.9
Q ss_pred CHHHHHHHhhccC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCcee
Q 013926 361 GDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL 415 (434)
Q Consensus 361 t~~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l 415 (434)
.-.++.++|.+.| .|.++.+.... . ++.-.+.+.+.+.|.++++. +|..+
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~-~G~~v 64 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKE-AGFAV 64 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHH-CCCEE
Confidence 3468888898877 77888764432 2 46666777777788878776 55543
No 240
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=45.43 E-value=28 Score=32.96 Aligned_cols=72 Identities=21% Similarity=0.302 Sum_probs=51.0
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCc-eeEEEEe-ecCCCCccc--eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNII-KDKTTRASR--CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~-v~~~~~~-~~~~~~~~~--~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
..-..|.|++||+..+++++.+....|-. |....+. .+.....+. .|||.|...++.......++|..++..
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~ 80 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDN 80 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecC
Confidence 44578999999999999999999988753 2222333 222333344 679999999998888887776654433
No 241
>PRK11901 hypothetical protein; Reviewed
Probab=45.06 E-value=1.4e+02 Score=27.84 Aligned_cols=62 Identities=21% Similarity=0.221 Sum_probs=42.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEE--EeCCHHHHHHHHHHhC
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFV--SYESPASAQNAIAMMN 411 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV--~f~~~~~A~~A~~~l~ 411 (434)
.....+|-|..+. .++.|..|....+ +..+++.....+|+.- |..| .|.+.++|..|+..|-
T Consensus 242 p~~~YTLQL~Aas---~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 242 PASHYTLQLSSAS---RSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred CCCCeEEEeecCC---CHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCC
Confidence 3455677777653 5788888888775 4556666655566554 3333 4899999999999875
No 242
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=44.85 E-value=51 Score=22.39 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.5
Q ss_pred HHHHHHhhccCCeEEEEE
Q 013926 363 QELGNAFQAFGRVLSAKV 380 (434)
Q Consensus 363 ~~L~~~F~~fG~v~~v~i 380 (434)
.+|+++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999976655
No 243
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=44.74 E-value=26 Score=33.07 Aligned_cols=71 Identities=10% Similarity=0.201 Sum_probs=49.7
Q ss_pred CeEEEeCCCCCCcHHHHHHhhhccCC-eeEEEEccCCCC---CcceEEEEEeCCHHHHHHHHHHhcCCccCCCCc
Q 013926 102 HKLFIGMLPKNVSEAEVSALFSIYGT-IKDLQILRGSQQ---TSKGCAFLKYETKEQALAALEAINGKHKMEGSS 172 (434)
Q Consensus 102 ~~v~v~nlp~~~~~~~l~~~f~~~G~-i~~i~~~~~~~~---~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~ 172 (434)
..|.|..||+..+.+++.+-+..+-. +....+.....+ .-.+.+||.|.+.++.......++|..+++...
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 56888999999999999888877642 222233222111 124788999999999888888888876665543
No 244
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=41.74 E-value=30 Score=30.95 Aligned_cols=36 Identities=22% Similarity=0.502 Sum_probs=27.9
Q ss_pred CCceEEEcCCCCCC------------CHHHHHHHhhccCCeEEEEEEe
Q 013926 347 PGANLFIYHIPQEF------------GDQELGNAFQAFGRVLSAKVFV 382 (434)
Q Consensus 347 ~~~~v~V~nLp~~~------------t~~~L~~~F~~fG~v~~v~i~~ 382 (434)
-+.||++.+||-.| +++-|+..|..||.|..|.|+.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 34578888887433 5678999999999999988764
No 245
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=41.15 E-value=23 Score=27.61 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=22.0
Q ss_pred cHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCC
Q 013926 114 SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYET 151 (434)
Q Consensus 114 ~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~ 151 (434)
+.++|++.|+.|.++. ++...+..| ..|++.|.|.+
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~g-h~g~aiv~F~~ 65 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQG-HTGFAIVEFNK 65 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETTE-EEEEEEEE--S
T ss_pred CHHHHHHHHHhcCCce-eEECcCCCC-CcEEEEEEECC
Confidence 4578999999998865 555554443 47899999997
No 246
>PRK11901 hypothetical protein; Reviewed
Probab=40.86 E-value=54 Score=30.47 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=42.4
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEE--EEeCCHHHHHHHHHHhc
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCF--VICPSRQEADKAVNACH 76 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~af--V~f~~~~~A~~al~~~~ 76 (434)
...-+|-|-.+ ..++.|..|.++.+ +.+++++.....+..-|.. =.|.+.++|+.|++.|-
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCC
Confidence 33445555554 46888999888876 5667777655544444543 38999999999999863
No 247
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=38.60 E-value=1.9e+02 Score=22.97 Aligned_cols=75 Identities=15% Similarity=0.126 Sum_probs=51.1
Q ss_pred CCceEEEcCCCCC---CCHHHHHHHhhccC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 013926 347 PGANLFIYHIPQE---FGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 422 (434)
Q Consensus 347 ~~~~v~V~nLp~~---~t~~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v 422 (434)
+...|.|+..... .+-..+.+....-| .+.++.. +.+ -..|.|.+.++-.+|.+.|...-=.+-.|.+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~--~~~------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAl 105 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITP--END------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQ 105 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEe--eCC------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3446888877444 45678888887766 3444433 211 4799999999999999988665555667777
Q ss_pred EEec-CCc
Q 013926 423 QLKR-DNK 429 (434)
Q Consensus 423 ~~a~-~~~ 429 (434)
.++. ..+
T Consensus 106 nl~p~~tP 113 (127)
T PRK10629 106 QDDNSQAM 113 (127)
T ss_pred ecCCCcch
Confidence 7776 443
No 248
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=30.60 E-value=64 Score=22.58 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=22.3
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceeCCe
Q 013926 392 FGFVSYESPASAQNAIAMMNGCQLGGK 418 (434)
Q Consensus 392 ~afV~f~~~~~A~~A~~~l~g~~l~g~ 418 (434)
+.+|.|.|..+|.+|-+.|....+..+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 689999999999999999876655443
No 249
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=29.27 E-value=42 Score=19.96 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=9.8
Q ss_pred CCCHHHHHHHhhccC
Q 013926 359 EFGDQELGNAFQAFG 373 (434)
Q Consensus 359 ~~t~~~L~~~F~~fG 373 (434)
++++++|++.|.+.+
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 578999999998754
No 250
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=28.64 E-value=9.7 Score=37.56 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=50.5
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCc
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKH 166 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~ 166 (434)
++.++++|+++.++..+|..+++.+--...+.+.... .......++|.|+---+...|...||+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~ir 297 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIR 297 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcc
Confidence 4568999999999999999999988766666655443 33345688999998777777777777654
No 251
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=27.69 E-value=2e+02 Score=21.83 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=30.6
Q ss_pred HHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHH
Q 013926 29 AQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73 (434)
Q Consensus 29 ~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~ 73 (434)
.+|..+++..| |.+-.|+.+.. ++. ||++++.|.+..-.++.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~--~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEE--ENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCC--cccEEEEEEEcChHHHHHHHh
Confidence 35678888888 68888888753 344 99999996666555554
No 252
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=27.49 E-value=71 Score=26.95 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=47.7
Q ss_pred CeEEEeCCCCCC-----cHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEE
Q 013926 102 HKLFIGMLPKNV-----SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 176 (434)
Q Consensus 102 ~~v~v~nlp~~~-----~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~ 176 (434)
..+++.+++..+ ......++|.+|-+.....+++. .+..-|.|.+.+.|..|..+++... +.|.+ .++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs-----frrvRi~f~~p~~a~~a~i~~~~~~-f~~~~-~~k 83 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS-----FRRVRINFSNPEAAADARIKLHSTS-FNGKN-ELK 83 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh-----hceeEEeccChhHHHHHHHHhhhcc-cCCCc-eEE
Confidence 345555555432 22334456666655444444433 5677899999999999999999877 55553 567
Q ss_pred EeeccCh
Q 013926 177 VKWADTE 183 (434)
Q Consensus 177 v~~a~~~ 183 (434)
..++...
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 7777554
No 253
>COG5584 Predicted small secreted protein [Function unknown]
Probab=26.97 E-value=1.1e+02 Score=22.75 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=26.9
Q ss_pred cCCCCCCCHHHHHHHHhccCceeEEEEeecCCC
Q 013926 20 GQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT 52 (434)
Q Consensus 20 ~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~ 52 (434)
.|+..+.--+-+++.|+++|+|+.-.+...+..
T Consensus 28 ~~is~e~alk~vk~afk~~mnI~GSwI~~~pe~ 60 (103)
T COG5584 28 KNISRENALKVVKEAFKQFMNIKGSWIVYEPEV 60 (103)
T ss_pred cccChhHHHHHHHHHhcccCCcceeEEEEeccc
Confidence 467777788889999999999999888776543
No 254
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=26.31 E-value=2.4e+02 Score=23.01 Aligned_cols=54 Identities=11% Similarity=0.374 Sum_probs=37.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHH
Q 013926 351 LFIYHIPQEFGDQELGNAFQA-FG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 407 (434)
Q Consensus 351 v~V~nLp~~~t~~~L~~~F~~-fG-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 407 (434)
-|+--++...+..+|++.++. || .|.+|..+.-+ .|.-+ |||.+....+|....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p-~g~KK--A~V~L~~~~~aidva 139 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITP-DGLKK--AYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcC-CCceE--EEEEECCCCcHHHHH
Confidence 334445778899999988876 76 67888776654 34333 999998877765433
No 255
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=26.28 E-value=2.4e+02 Score=20.03 Aligned_cols=59 Identities=14% Similarity=0.256 Sum_probs=39.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhcc----CceeEEEEeecCCCC-ccc-eEEEEeCCHHHHHHHHHHh
Q 013926 17 LFVGQVPKHMTEAQLLAMFKEF----ALVDEVNIIKDKTTR-ASR-CCFVICPSRQEADKAVNAC 75 (434)
Q Consensus 17 l~v~nLp~~~te~~l~~~f~~~----g~v~~~~~~~~~~~~-~~~-~afV~f~~~~~A~~al~~~ 75 (434)
|-.++||..+|.++|.+.-..- ....+|.++....+. ..+ ||+..=.|.+..+++.+.-
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~a 67 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRA 67 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHc
Confidence 4567899889999998776542 111244455444331 224 9999999999999987763
No 256
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=26.08 E-value=78 Score=23.88 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=19.0
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhc
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKE 37 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~ 37 (434)
++.++..++++.|| |.+||.+|++.
T Consensus 60 ~ekeg~~i~~g~lP---t~~eVe~Fl~~ 84 (105)
T PF09702_consen 60 KEKEGNYIIVGYLP---TDEEVEDFLDD 84 (105)
T ss_pred ccCCCCEEecCCCC---ChHHHHHHHHH
Confidence 45667999999999 66777777654
No 257
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=24.56 E-value=64 Score=28.40 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=30.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEE
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKV 380 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i 380 (434)
....++|+-|+|..+|++.|..+.+..|-++.+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 35578999999999999999999999997776543
No 258
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=23.82 E-value=2.6e+02 Score=24.99 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=39.2
Q ss_pred CCCCceEEEcCCCCCC--CHHHHHHHhhccCCeE----EEEEEecCCCCCeeeEEEEEeC----CHHHHHHHH
Q 013926 345 GPPGANLFIYHIPQEF--GDQELGNAFQAFGRVL----SAKVFVDKATGVSKCFGFVSYE----SPASAQNAI 407 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~--t~~~L~~~F~~fG~v~----~v~i~~~~~~g~~~g~afV~f~----~~~~A~~A~ 407 (434)
+|.+..|.|..|-.+. |..+|+.+|.++|--. +|..+.++ .|+|.|. +.+++..++
T Consensus 91 gP~GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~-------kG~i~~~~~~~~~d~~~e~a 156 (238)
T TIGR01033 91 APGGVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSR-------KGVIEVPKNEVDEEDLMEAA 156 (238)
T ss_pred cCCceEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeec-------ceEEEECCCCCCHHHHHHHH
Confidence 5677889999997765 6789999999988543 45666664 3778884 344554433
No 259
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=23.48 E-value=37 Score=32.34 Aligned_cols=61 Identities=13% Similarity=0.022 Sum_probs=48.7
Q ss_pred CceEEEcCCCCCCCH--------HHHHHHhhc--cCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHH
Q 013926 348 GANLFIYHIPQEFGD--------QELGNAFQA--FGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 408 (434)
Q Consensus 348 ~~~v~V~nLp~~~t~--------~~L~~~F~~--fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 408 (434)
-+.+|+.+.+...+. +++...|.. .+.+..++..++-.+...+|--|++|.+.+.|++...
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 366888888765433 599999988 6788888887776577788889999999999998874
No 260
>PRK10905 cell division protein DamX; Validated
Probab=23.45 E-value=2.8e+02 Score=25.91 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=41.6
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceE--EEEeCCHHHHHHHHHHhc
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC--FVICPSRQEADKAVNACH 76 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~a--fV~f~~~~~A~~al~~~~ 76 (434)
....+|-|..+. +++.|++|..+.| +.+..++.....|...|- +=.|.+.++|++|++.|-
T Consensus 245 a~~YTLQL~A~S---s~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 245 SSHYTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred CCceEEEEEecC---CHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCC
Confidence 344566666654 7788999988886 455555554444443333 448999999999999863
No 261
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=23.24 E-value=1.9e+02 Score=22.44 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=27.0
Q ss_pred CCCHHHHHHHhhc-cC---CeEEE-EEEecCCCCCeeeEEEEEeCCHHHHH
Q 013926 359 EFGDQELGNAFQA-FG---RVLSA-KVFVDKATGVSKCFGFVSYESPASAQ 404 (434)
Q Consensus 359 ~~t~~~L~~~F~~-fG---~v~~v-~i~~~~~~g~~~g~afV~f~~~~~A~ 404 (434)
+++.+||++-.+. |- +++.| .+-.+--.|+++|||.| |.+.|.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 4677788776654 43 33333 22222236788999988 67777665
No 262
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=22.69 E-value=2.7e+02 Score=19.33 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=33.7
Q ss_pred CcHHHHHHhhhccC-CeeEEEEccCCCCCcceEEEEEeC-CHHHHHHHHHHhcC
Q 013926 113 VSEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYE-TKEQALAALEAING 164 (434)
Q Consensus 113 ~~~~~l~~~f~~~G-~i~~i~~~~~~~~~~~g~a~V~f~-~~~~a~~a~~~l~~ 164 (434)
-..-++.+.|+.+| .+..|.-.........-.-||+++ ..++..++++.+..
T Consensus 12 G~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 12 GALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred cHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 34667888899888 455554433333333456688888 55666778887765
No 263
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=21.82 E-value=1.4e+02 Score=27.96 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=34.1
Q ss_pred EEEEeCCHHHHHHHHHHhccCccCCCCCCceeeeccCcccccCCCeEEEeCCCCCCcHHHHHHhhh
Q 013926 58 CFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS 123 (434)
Q Consensus 58 afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~ 123 (434)
|||.|.+..+|..|++.+..... ....+..+. ++ +-|.=.||.....+..++.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~-----~~~~v~~AP-eP----~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP-----NSWRVSPAP-EP----DDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC-----CCceEeeCC-Cc----ccccccccCCChHHHHHHHHHH
Confidence 79999999999999997544321 222333222 11 2244567766666666665553
No 264
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=21.67 E-value=3.2e+02 Score=20.68 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=24.5
Q ss_pred CCCHHHHHHHhhc-cCCeEEEEEEecC--C--CCCeeeEEEEEeCCHHHHHH
Q 013926 359 EFGDQELGNAFQA-FGRVLSAKVFVDK--A--TGVSKCFGFVSYESPASAQN 405 (434)
Q Consensus 359 ~~t~~~L~~~F~~-fG~v~~v~i~~~~--~--~g~~~g~afV~f~~~~~A~~ 405 (434)
+.+..+|++-... |+.=.+..++..- . .|+++|||.| |.|.+.|.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 4577888777754 6633233222211 2 3456666665 556555543
No 265
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=21.00 E-value=37 Score=23.49 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=26.5
Q ss_pred HHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHh
Q 013926 29 AQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75 (434)
Q Consensus 29 ~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~ 75 (434)
++|.+.|..++....+.-. .+|..|.+.++|...+..+
T Consensus 27 ~~v~~~~~~~~~f~k~vkL---------~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL---------KAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh---------hhccCCCCHHHHHHHHHHh
Confidence 5777777765543332211 5899999999999888765
No 266
>PF09341 Pcc1: Transcription factor Pcc1; InterPro: IPR015419 Pcc1 is a proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1, Gon7, Bud32, and Cgi121; related to human cancer-testis antigens [].; PDB: 2BNR_C 2P5W_C 3KLA_C 2F54_C 2P5E_C 2F53_C 3ENO_E 3ENC_B.
Probab=20.24 E-value=2.4e+02 Score=19.82 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=16.5
Q ss_pred eEEEEEeCCHHHHHHHHHHhC
Q 013926 391 CFGFVSYESPASAQNAIAMMN 411 (434)
Q Consensus 391 g~afV~f~~~~~A~~A~~~l~ 411 (434)
...-|.|.+++.|+.+.+.|.
T Consensus 3 ~~l~i~f~s~~~A~ii~~sL~ 23 (76)
T PF09341_consen 3 FTLEIPFESEEKAEIIYRSLK 23 (76)
T ss_dssp EEEEEE-SSHHHHHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHhC
Confidence 356789999999999988774
Done!