Query 013926
Match_columns 434
No_of_seqs 167 out of 2330
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 19:40:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013926.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013926hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 6.4E-45 2.2E-49 338.2 26.9 255 8-429 35-292 (292)
2 3smz_A Protein raver-1, ribonu 100.0 5.4E-44 1.8E-48 330.7 29.9 249 8-430 16-266 (284)
3 4f02_A Polyadenylate-binding p 100.0 5.8E-33 2E-37 245.0 22.1 168 100-429 14-182 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 1E-32 3.6E-37 233.8 21.8 165 102-426 1-165 (166)
5 2qfj_A FBP-interacting repress 100.0 2.6E-32 8.8E-37 241.9 23.7 182 101-433 28-210 (216)
6 3nmr_A Cugbp ELAV-like family 100.0 4.8E-32 1.6E-36 231.9 22.5 169 13-181 2-175 (175)
7 1l3k_A Heterogeneous nuclear r 100.0 1.5E-31 5E-36 233.3 21.5 176 99-432 11-187 (196)
8 4f02_A Polyadenylate-binding p 100.0 8.6E-32 2.9E-36 237.5 19.8 176 7-189 8-187 (213)
9 1b7f_A Protein (SXL-lethal pro 100.0 1.5E-31 5.3E-36 227.1 20.1 163 101-425 3-168 (168)
10 1fxl_A Paraneoplastic encephal 100.0 2.3E-31 8E-36 225.7 20.9 163 101-425 2-167 (167)
11 3nmr_A Cugbp ELAV-like family 100.0 2.1E-31 7.2E-36 227.9 20.4 167 101-426 3-175 (175)
12 1fxl_A Paraneoplastic encephal 100.0 1.7E-30 5.7E-35 220.5 21.6 164 13-180 1-167 (167)
13 2cjk_A Nuclear polyadenylated 100.0 1.3E-31 4.4E-36 227.4 14.7 164 101-429 3-167 (167)
14 1b7f_A Protein (SXL-lethal pro 100.0 2.1E-30 7.3E-35 220.1 20.2 164 13-180 2-168 (168)
15 3pgw_A U1-A; protein-RNA compl 100.0 3.5E-29 1.2E-33 231.0 28.7 77 345-426 204-281 (282)
16 2g4b_A Splicing factor U2AF 65 100.0 1.2E-29 4.1E-34 216.3 19.0 157 101-425 4-171 (172)
17 1l3k_A Heterogeneous nuclear r 100.0 1.6E-29 5.4E-34 220.4 19.5 174 6-187 5-187 (196)
18 2yh0_A Splicing factor U2AF 65 100.0 3.5E-29 1.2E-33 218.5 21.5 182 101-430 4-196 (198)
19 3md3_A Nuclear and cytoplasmic 100.0 1.8E-29 6.2E-34 213.8 18.9 161 15-181 1-165 (166)
20 2qfj_A FBP-interacting repress 100.0 3E-29 1E-33 222.1 20.7 169 9-183 23-205 (216)
21 1fje_B Nucleolin RBD12, protei 100.0 1.4E-30 4.8E-35 222.8 9.7 166 98-429 10-175 (175)
22 2cjk_A Nuclear polyadenylated 100.0 2.1E-29 7.1E-34 213.7 14.9 163 12-183 1-166 (167)
23 3tyt_A Heterogeneous nuclear r 100.0 4.3E-28 1.5E-32 211.4 19.0 194 101-425 4-204 (205)
24 3sde_A Paraspeckle component 1 100.0 8.3E-28 2.8E-32 218.7 20.6 157 100-430 21-181 (261)
25 2adc_A Polypyrimidine tract-bi 100.0 2.1E-27 7.2E-32 211.8 22.1 194 99-428 32-228 (229)
26 1qm9_A Polypyrimidine tract-bi 100.0 1.1E-27 3.8E-32 209.0 19.2 192 101-428 3-197 (198)
27 2g4b_A Splicing factor U2AF 65 100.0 1E-27 3.4E-32 204.4 17.6 157 12-180 2-171 (172)
28 3smz_A Protein raver-1, ribonu 100.0 2.4E-27 8.3E-32 218.9 21.5 175 12-192 93-273 (284)
29 3tyt_A Heterogeneous nuclear r 100.0 1.4E-27 4.9E-32 208.1 17.7 160 12-180 2-204 (205)
30 2ghp_A U4/U6 snRNA-associated 100.0 1.2E-27 4.2E-32 221.8 17.8 160 99-430 39-199 (292)
31 3sde_A Paraspeckle component 1 100.0 4.3E-27 1.5E-31 214.0 19.5 163 8-183 16-179 (261)
32 1fje_B Nucleolin RBD12, protei 99.9 6.5E-28 2.2E-32 206.2 11.8 164 8-183 7-174 (175)
33 2yh0_A Splicing factor U2AF 65 99.9 9.2E-27 3.1E-31 203.1 16.5 160 12-183 2-194 (198)
34 2adc_A Polypyrimidine tract-bi 99.9 5.5E-26 1.9E-30 202.6 20.8 161 8-182 28-227 (229)
35 3pgw_A U1-A; protein-RNA compl 99.9 4.6E-26 1.6E-30 210.0 20.2 161 9-181 4-281 (282)
36 1qm9_A Polypyrimidine tract-bi 99.9 6E-26 2E-30 198.0 16.3 156 13-182 2-196 (198)
37 2kn4_A Immunoglobulin G-bindin 99.9 3.7E-23 1.3E-27 173.3 14.8 86 347-432 69-154 (158)
38 4fxv_A ELAV-like protein 1; RN 99.9 1.3E-22 4.5E-27 154.9 12.5 82 346-427 17-98 (99)
39 3s8s_A Histone-lysine N-methyl 99.9 2E-21 7E-26 151.2 12.5 84 346-429 4-87 (110)
40 2cpz_A CUG triplet repeat RNA- 99.9 6E-21 2.1E-25 150.6 13.3 90 344-433 21-110 (115)
41 2lxi_A RNA-binding protein 10; 99.9 5.2E-22 1.8E-26 149.3 6.7 83 349-431 2-86 (91)
42 2cq0_A Eukaryotic translation 99.9 8.2E-21 2.8E-25 146.7 13.3 90 344-433 11-100 (103)
43 3bs9_A Nucleolysin TIA-1 isofo 99.8 8.4E-21 2.9E-25 141.9 12.2 83 347-429 5-87 (87)
44 3md1_A Nuclear and cytoplasmic 99.8 1.1E-20 3.9E-25 139.8 12.5 81 349-429 2-82 (83)
45 2lkz_A RNA-binding protein 5; 99.8 1.3E-21 4.5E-26 147.5 7.3 80 348-427 9-94 (95)
46 2do4_A Squamous cell carcinoma 99.8 2.4E-20 8.3E-25 143.2 14.5 86 345-431 14-99 (100)
47 2dgo_A Cytotoxic granule-assoc 99.8 2.5E-20 8.5E-25 147.1 14.5 88 344-431 11-98 (115)
48 2cqc_A Arginine/serine-rich sp 99.8 1.8E-20 6.2E-25 142.5 13.2 84 344-427 11-94 (95)
49 2e5h_A Zinc finger CCHC-type a 99.8 1.7E-20 5.7E-25 142.4 12.2 82 345-426 13-94 (94)
50 2dnh_A Bruno-like 5, RNA bindi 99.8 2.6E-20 9E-25 144.4 13.5 88 345-433 12-102 (105)
51 2khc_A Testis-specific RNP-typ 99.8 2.4E-20 8.2E-25 147.9 13.5 84 343-426 35-118 (118)
52 2i2y_A Fusion protein consists 99.8 1.1E-20 3.6E-25 156.6 11.5 78 347-429 72-149 (150)
53 2dnz_A Probable RNA-binding pr 99.8 1.7E-20 5.7E-25 142.7 11.5 87 347-433 4-90 (95)
54 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.6E-20 5.5E-25 139.6 11.1 81 346-426 5-85 (85)
55 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.3E-20 4.4E-25 145.3 10.9 88 345-432 9-96 (102)
56 1whw_A Hypothetical protein ri 99.8 2.1E-20 7.4E-25 143.2 11.9 87 346-432 6-92 (99)
57 4f25_A Polyadenylate-binding p 99.8 2E-20 6.9E-25 147.3 12.0 82 348-431 5-86 (115)
58 1x5u_A Splicing factor 3B subu 99.8 2.2E-20 7.4E-25 144.9 11.7 88 345-432 12-99 (105)
59 3p5t_L Cleavage and polyadenyl 99.8 3.1E-21 1.1E-25 145.0 6.5 85 349-433 2-88 (90)
60 2x1f_A MRNA 3'-END-processing 99.8 1.5E-20 5E-25 143.2 10.1 84 348-431 2-85 (96)
61 2dgs_A DAZ-associated protein 99.8 3E-20 1E-24 142.4 11.8 86 346-432 8-93 (99)
62 1x5s_A Cold-inducible RNA-bind 99.8 1.8E-20 6.1E-25 144.5 10.6 88 345-432 9-96 (102)
63 1p27_B RNA-binding protein 8A; 99.8 3.3E-20 1.1E-24 144.1 11.9 85 346-430 21-105 (106)
64 2cpf_A RNA binding motif prote 99.8 3.2E-20 1.1E-24 142.0 11.5 86 347-432 4-92 (98)
65 1u6f_A Tcubp1, RNA-binding pro 99.8 2.1E-19 7.3E-24 146.8 17.0 88 345-432 39-126 (139)
66 1x4h_A RNA-binding protein 28; 99.8 5.3E-20 1.8E-24 144.3 12.8 88 345-432 12-105 (111)
67 2jrs_A RNA-binding protein 39; 99.8 4.1E-20 1.4E-24 143.6 11.9 84 346-429 24-107 (108)
68 2dnm_A SRP46 splicing factor; 99.8 2.2E-20 7.4E-25 144.3 10.3 88 345-432 10-97 (103)
69 2dng_A Eukaryotic translation 99.8 9E-20 3.1E-24 140.8 13.7 86 345-432 12-97 (103)
70 2d9p_A Polyadenylate-binding p 99.8 5.8E-20 2E-24 141.9 12.6 86 345-432 12-97 (103)
71 1oo0_B CG8781-PA, drosophila Y 99.8 3.6E-20 1.2E-24 144.9 11.3 87 345-431 23-109 (110)
72 1x5t_A Splicing factor 3B subu 99.8 2.3E-20 7.9E-25 142.2 9.9 86 347-432 4-90 (96)
73 2la6_A RNA-binding protein FUS 99.8 4.9E-20 1.7E-24 141.2 11.8 82 345-426 10-99 (99)
74 2cqd_A RNA-binding region cont 99.8 7.1E-20 2.4E-24 144.7 12.7 88 344-432 13-100 (116)
75 2cph_A RNA binding motif prote 99.8 6E-20 2.1E-24 142.9 11.9 87 345-431 12-100 (107)
76 2ywk_A Putative RNA-binding pr 99.8 5.2E-20 1.8E-24 140.0 11.2 82 345-427 13-94 (95)
77 2dgp_A Bruno-like 4, RNA bindi 99.8 4E-20 1.4E-24 143.7 10.5 88 345-432 10-100 (106)
78 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.8E-19 6E-24 139.2 13.8 87 344-432 11-97 (103)
79 2kxn_B Transformer-2 protein h 99.8 3.5E-20 1.2E-24 148.7 9.8 87 344-430 42-128 (129)
80 2cqp_A RNA-binding protein 12; 99.8 7.4E-20 2.5E-24 139.9 11.0 84 346-429 13-96 (98)
81 1wi8_A EIF-4B, eukaryotic tran 99.8 1E-19 3.5E-24 140.7 11.8 84 346-431 13-97 (104)
82 3ns6_A Eukaryotic translation 99.8 9.3E-21 3.2E-25 145.2 5.8 83 347-429 5-94 (100)
83 2div_A TRNA selenocysteine ass 99.8 7.6E-20 2.6E-24 140.2 10.8 85 346-430 7-96 (99)
84 2cpe_A RNA-binding protein EWS 99.8 8.7E-20 3E-24 143.5 11.4 88 345-432 12-107 (113)
85 2cq3_A RNA-binding protein 9; 99.8 3E-19 1E-23 137.8 14.1 87 344-432 11-97 (103)
86 2do0_A HnRNP M, heterogeneous 99.8 3.6E-19 1.2E-23 140.2 14.7 85 345-430 12-96 (114)
87 2dh8_A DAZ-associated protein 99.8 9.2E-20 3.2E-24 141.3 11.0 87 345-432 13-99 (105)
88 2dgx_A KIAA0430 protein; RRM d 99.8 1.3E-19 4.4E-24 137.8 11.5 84 347-433 8-95 (96)
89 3r27_A HnRNP L, heterogeneous 99.8 9E-20 3.1E-24 137.2 10.3 80 344-429 17-98 (100)
90 2kt5_A RNA and export factor-b 99.8 7.1E-19 2.4E-23 140.6 16.1 87 346-433 33-119 (124)
91 4a8x_A RNA-binding protein wit 99.8 1.1E-19 3.8E-24 136.0 10.6 83 347-429 3-86 (88)
92 2cqg_A TDP-43, TAR DNA-binding 99.8 4.9E-19 1.7E-23 136.6 14.5 85 345-431 12-96 (103)
93 2fy1_A RNA-binding motif prote 99.8 1.2E-19 4E-24 143.0 10.7 85 346-431 5-89 (116)
94 2dgw_A Probable RNA-binding pr 99.8 3.9E-19 1.3E-23 133.9 13.2 83 346-431 8-90 (91)
95 3s7r_A Heterogeneous nuclear r 99.8 2.8E-19 9.7E-24 133.4 12.3 80 345-425 8-87 (87)
96 2dhg_A TRNA selenocysteine ass 99.8 1.1E-19 3.6E-24 140.7 10.3 86 346-432 7-94 (104)
97 2rs2_A Musashi-1, RNA-binding 99.8 1.2E-19 3.9E-24 141.4 10.5 87 345-432 22-108 (109)
98 2dgv_A HnRNP M, heterogeneous 99.8 1.9E-19 6.5E-24 136.0 11.2 84 346-431 6-89 (92)
99 3ucg_A Polyadenylate-binding p 99.8 1.9E-19 6.5E-24 135.1 11.2 82 347-429 5-86 (89)
100 2ek1_A RNA-binding protein 12; 99.8 5.8E-20 2E-24 139.7 8.4 81 347-427 14-94 (95)
101 1x4a_A Splicing factor, argini 99.8 5.1E-19 1.7E-23 138.1 14.0 86 345-433 19-104 (109)
102 3ulh_A THO complex subunit 4; 99.8 3.1E-19 1.1E-23 138.8 12.7 81 346-427 27-107 (107)
103 1sjq_A Polypyrimidine tract-bi 99.8 8.3E-20 2.8E-24 138.8 9.1 81 345-431 13-95 (105)
104 2wbr_A GW182, gawky, LD47780P; 99.8 1.5E-19 5E-24 130.7 9.5 74 347-426 6-79 (89)
105 3n9u_C Cleavage and polyadenyl 99.8 1.6E-19 5.5E-24 149.6 11.1 82 347-428 54-137 (156)
106 1h2v_Z 20 kDa nuclear CAP bind 99.8 5E-19 1.7E-23 147.6 13.9 88 346-433 37-124 (156)
107 2m2b_A RNA-binding protein 10; 99.8 5.4E-20 1.9E-24 148.5 7.8 85 345-430 20-110 (131)
108 1wex_A Hypothetical protein (r 99.8 2.2E-19 7.4E-24 137.8 10.6 83 345-433 12-96 (104)
109 2err_A Ataxin-2-binding protei 99.8 1.4E-19 4.8E-24 141.0 9.7 84 344-429 25-108 (109)
110 3ex7_B RNA-binding protein 8A; 99.8 1.7E-19 5.8E-24 144.7 10.2 88 345-432 19-106 (126)
111 1x4b_A Heterogeneous nuclear r 99.8 2.2E-19 7.7E-24 141.8 10.6 85 347-432 26-110 (116)
112 2cq1_A PTB-like protein L; RRM 99.8 5.8E-19 2E-23 134.5 12.3 82 344-431 11-94 (101)
113 4f25_A Polyadenylate-binding p 99.8 1.6E-19 5.6E-24 142.0 9.5 99 13-116 4-112 (115)
114 2cq4_A RNA binding motif prote 99.8 1E-19 3.4E-24 143.3 8.2 83 347-430 24-106 (114)
115 2kn4_A Immunoglobulin G-bindin 99.8 4.4E-19 1.5E-23 148.3 12.6 136 43-183 2-150 (158)
116 1p1t_A Cleavage stimulation fa 99.8 1.9E-19 6.4E-24 139.3 9.4 84 347-430 7-90 (104)
117 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 5.8E-19 2E-23 144.5 12.5 82 344-425 59-140 (140)
118 1s79_A Lupus LA protein; RRM, 99.8 1.6E-19 5.4E-24 138.6 8.4 79 347-427 10-88 (103)
119 2j76_E EIF-4B, EIF4B, eukaryot 99.8 7.5E-20 2.5E-24 140.3 6.4 82 346-429 17-99 (100)
120 2fc9_A NCL protein; structure 99.8 7.5E-19 2.6E-23 135.1 11.9 84 345-432 12-95 (101)
121 1x4d_A Matrin 3; structural ge 99.8 3E-19 1E-23 135.9 9.4 79 346-430 13-94 (102)
122 1x4e_A RNA binding motif, sing 99.8 5E-20 1.7E-24 136.9 4.7 81 347-427 4-84 (85)
123 2cpi_A CCR4-NOT transcription 99.8 5E-19 1.7E-23 138.4 10.6 85 345-429 12-102 (111)
124 2db1_A Heterogeneous nuclear r 99.8 3.7E-19 1.3E-23 140.6 9.9 81 346-428 15-98 (118)
125 1wez_A HnRNP H', FTP-3, hetero 99.8 5.6E-19 1.9E-23 135.5 10.0 83 346-431 13-95 (102)
126 2fc8_A NCL protein; structure 99.8 1.6E-18 5.5E-23 133.5 12.6 85 345-432 12-96 (102)
127 2ad9_A Polypyrimidine tract-bi 99.8 7.1E-19 2.4E-23 137.2 10.6 82 345-432 28-111 (119)
128 2dis_A Unnamed protein product 99.8 4.3E-19 1.5E-23 138.5 9.3 85 347-431 7-95 (109)
129 2jwn_A Embryonic polyadenylate 99.8 1.1E-18 3.7E-23 139.6 11.2 84 347-431 35-118 (124)
130 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.6E-18 5.5E-23 145.8 12.5 86 346-431 70-155 (165)
131 2mss_A Protein (musashi1); RNA 99.8 2.1E-19 7E-24 130.1 6.1 75 350-425 1-75 (75)
132 2ki2_A SS-DNA binding protein 99.8 7.7E-20 2.7E-24 137.5 3.8 83 349-432 2-84 (90)
133 1x5o_A RNA binding motif, sing 99.8 4.1E-18 1.4E-22 134.1 13.9 84 345-429 22-113 (114)
134 2cpy_A RNA-binding protein 12; 99.8 4.7E-19 1.6E-23 139.2 8.3 82 346-429 13-95 (114)
135 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.2E-19 7.5E-24 130.7 5.9 76 349-425 1-76 (77)
136 2lea_A Serine/arginine-rich sp 99.8 2.2E-19 7.6E-24 145.3 6.4 86 347-432 46-131 (135)
137 2a3j_A U1 small nuclear ribonu 99.8 9.4E-19 3.2E-23 139.2 9.6 81 346-429 27-111 (127)
138 2dnq_A RNA-binding protein 4B; 99.8 1.6E-18 5.4E-23 130.2 10.4 79 346-432 6-84 (90)
139 2cpx_A Hypothetical protein FL 99.8 5.5E-19 1.9E-23 139.4 8.2 88 346-433 23-110 (115)
140 1wg5_A Heterogeneous nuclear r 99.8 1.4E-18 4.7E-23 134.1 10.2 82 346-429 13-95 (104)
141 2nlw_A Eukaryotic translation 99.8 9.2E-19 3.2E-23 135.4 9.2 81 347-429 14-101 (105)
142 1fj7_A Nucleolin RBD1, protein 99.8 1.3E-19 4.4E-24 139.4 4.2 85 346-432 15-99 (101)
143 1why_A Hypothetical protein ri 99.8 2.5E-18 8.6E-23 131.0 11.4 81 345-431 14-96 (97)
144 2dnn_A RNA-binding protein 12; 99.8 9.9E-19 3.4E-23 135.2 9.0 79 347-428 15-93 (109)
145 2hgl_A HNRPF protein, heteroge 99.8 6.7E-19 2.3E-23 141.7 8.0 80 347-428 43-125 (136)
146 4fxv_A ELAV-like protein 1; RN 99.8 2.2E-18 7.7E-23 131.4 10.5 86 7-95 12-98 (99)
147 2jvr_A Nucleolar protein 3; RN 99.8 1.4E-18 4.9E-23 134.5 9.5 79 347-429 27-106 (111)
148 2dgt_A RNA-binding protein 30; 99.8 4.3E-18 1.5E-22 128.4 11.9 81 345-433 7-87 (92)
149 2xnq_A Nuclear polyadenylated 99.8 3.9E-18 1.3E-22 129.7 11.4 77 345-429 19-96 (97)
150 2dgu_A Heterogeneous nuclear r 99.8 4.1E-18 1.4E-22 131.3 11.7 79 346-432 9-87 (103)
151 1wel_A RNA-binding protein 12; 99.8 9.4E-19 3.2E-23 139.8 8.3 82 346-428 23-104 (124)
152 1x4c_A Splicing factor, argini 99.8 6.8E-18 2.3E-22 131.3 13.0 78 347-431 14-96 (108)
153 1x4g_A Nucleolysin TIAR; struc 99.8 3E-18 1E-22 133.6 10.7 82 345-432 22-103 (109)
154 2jvo_A Nucleolar protein 3; nu 99.8 2.4E-18 8.3E-23 133.5 9.8 79 345-431 28-106 (108)
155 2ytc_A PRE-mRNA-splicing facto 99.8 4.7E-18 1.6E-22 126.2 10.7 76 345-426 9-85 (85)
156 2cpj_A Non-POU domain-containi 99.8 2.9E-18 1E-22 131.2 9.8 80 345-430 12-91 (99)
157 1wf1_A RNA-binding protein RAL 99.8 8.3E-18 2.8E-22 131.3 12.3 79 347-433 26-105 (110)
158 2e5j_A Methenyltetrahydrofolat 99.8 4.5E-18 1.5E-22 129.6 10.5 80 345-429 16-95 (97)
159 1fjc_A Nucleolin RBD2, protein 99.8 3.8E-18 1.3E-22 129.8 9.9 83 345-432 13-95 (96)
160 1x4f_A Matrin 3; structural ge 99.8 2.9E-18 9.8E-23 132.3 9.2 81 345-431 22-105 (112)
161 2krb_A Eukaryotic translation 99.8 7E-19 2.4E-23 129.3 5.5 72 349-422 2-80 (81)
162 2cpd_A Apobec-1 stimulating pr 99.8 1.5E-17 5.1E-22 127.2 13.1 79 345-431 12-92 (99)
163 1nu4_A U1A RNA binding domain; 99.7 1.5E-18 5.3E-23 132.3 7.4 82 346-430 6-91 (97)
164 2lmi_A GRSF-1, G-rich sequence 99.7 4.7E-19 1.6E-23 137.6 4.4 81 346-428 9-92 (107)
165 2hvz_A Splicing factor, argini 99.7 1.8E-18 6E-23 133.0 7.6 79 349-432 1-79 (101)
166 2dnp_A RNA-binding protein 14; 99.7 8E-18 2.7E-22 126.3 10.9 79 345-431 6-84 (90)
167 2la4_A Nuclear and cytoplasmic 99.7 2.5E-18 8.6E-23 132.1 8.2 76 347-428 26-101 (101)
168 2xs2_A Deleted in azoospermia- 99.7 2.2E-18 7.5E-23 132.7 7.5 82 347-431 8-89 (102)
169 2kvi_A Nuclear polyadenylated 99.7 4E-18 1.4E-22 129.6 8.3 80 345-432 7-87 (96)
170 1iqt_A AUF1, heterogeneous nuc 99.7 8.7E-19 3E-23 126.8 4.3 75 350-425 1-75 (75)
171 2lcw_A RNA-binding protein FUS 99.6 1.4E-19 4.9E-24 142.9 0.0 86 346-431 5-98 (116)
172 2j8a_A Histone-lysine N-methyl 99.7 7.1E-18 2.4E-22 130.1 9.1 80 349-428 3-96 (136)
173 3q2s_C Cleavage and polyadenyl 99.7 4.7E-18 1.6E-22 150.2 9.2 82 347-428 67-150 (229)
174 2cqh_A IGF-II mRNA-binding pro 99.7 6.1E-18 2.1E-22 127.8 8.6 79 347-432 7-87 (93)
175 2dha_A FLJ20171 protein; RRM d 99.7 3.6E-18 1.2E-22 134.9 6.9 81 346-428 21-105 (123)
176 1x5p_A Negative elongation fac 99.7 4E-17 1.4E-21 124.3 12.3 79 346-432 13-91 (97)
177 2diu_A KIAA0430 protein; struc 99.7 1.1E-17 3.9E-22 121.9 8.5 74 347-430 7-86 (96)
178 3lqv_A PRE-mRNA branch site pr 99.7 8.8E-18 3E-22 132.4 8.6 80 347-429 7-86 (115)
179 2f3j_A RNA and export factor b 99.7 1.1E-17 3.9E-22 141.6 9.7 85 346-431 86-170 (177)
180 2cq2_A Hypothetical protein LO 99.7 1E-17 3.5E-22 129.2 8.5 81 347-433 24-111 (114)
181 1whx_A Hypothetical protein ri 99.7 8.8E-18 3E-22 131.1 8.0 77 347-429 9-85 (111)
182 3zzy_A Polypyrimidine tract-bi 99.7 4.9E-17 1.7E-21 128.3 12.2 80 349-433 29-111 (130)
183 2i2y_A Fusion protein consists 99.7 4.4E-17 1.5E-21 134.8 12.1 116 57-183 15-148 (150)
184 2lxi_A RNA-binding protein 10; 99.7 5E-18 1.7E-22 127.4 5.7 83 14-98 1-85 (91)
185 2e44_A Insulin-like growth fac 99.7 2.6E-17 9E-22 125.1 9.5 80 347-430 14-94 (96)
186 1sjr_A Polypyrimidine tract-bi 99.7 4.6E-17 1.6E-21 133.4 11.2 80 348-431 46-127 (164)
187 2e5g_A U6 snRNA-specific termi 99.7 4.6E-17 1.6E-21 123.2 10.4 80 347-432 7-86 (94)
188 1wg1_A KIAA1579 protein, homol 99.7 2.9E-17 9.9E-22 122.6 9.0 76 347-429 4-79 (88)
189 2hgn_A Heterogeneous nuclear r 99.7 2.7E-18 9.2E-23 138.6 3.6 81 347-430 45-125 (139)
190 3egn_A RNA-binding protein 40; 99.7 8.1E-18 2.8E-22 138.0 6.4 81 346-429 43-131 (143)
191 2hgm_A HNRPF protein, heteroge 99.7 7.3E-18 2.5E-22 133.3 5.8 79 347-428 41-121 (126)
192 2pe8_A Splicing factor 45; RRM 99.7 8.8E-17 3E-21 123.4 11.4 82 346-427 6-93 (105)
193 3lqv_A PRE-mRNA branch site pr 99.7 5.2E-17 1.8E-21 127.9 10.2 106 10-127 4-109 (115)
194 2dgp_A Bruno-like 4, RNA bindi 99.7 8.6E-17 2.9E-21 124.7 10.9 93 6-98 5-98 (106)
195 3s8s_A Histone-lysine N-methyl 99.7 6.9E-17 2.4E-21 125.5 10.1 82 11-95 3-85 (110)
196 2dnh_A Bruno-like 5, RNA bindi 99.7 2.2E-16 7.5E-21 122.1 12.3 91 7-98 8-99 (105)
197 3d2w_A TAR DNA-binding protein 99.7 7.4E-17 2.5E-21 120.4 9.1 76 346-430 9-86 (89)
198 2e5i_A Heterogeneous nuclear r 99.7 7E-16 2.4E-20 121.3 14.5 76 349-430 26-104 (124)
199 2lkz_A RNA-binding protein 5; 99.7 4.6E-17 1.6E-21 122.5 7.0 84 10-95 5-94 (95)
200 3r27_A HnRNP L, heterogeneous 99.7 1.7E-16 5.9E-21 119.2 9.7 84 6-96 13-97 (100)
201 3pgw_S U1-70K; protein-RNA com 99.7 2.2E-16 7.6E-21 152.6 12.7 84 347-430 101-184 (437)
202 2cq0_A Eukaryotic translation 99.7 1.9E-16 6.4E-21 122.0 9.8 90 5-97 6-96 (103)
203 1sjq_A Polypyrimidine tract-bi 99.7 1.8E-16 6.1E-21 120.4 9.3 82 9-97 11-93 (105)
204 2cqc_A Arginine/serine-rich sp 99.7 3.1E-16 1.1E-20 118.9 10.4 88 4-94 5-93 (95)
205 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.8E-16 9.7E-21 117.0 9.9 81 12-95 4-85 (87)
206 1p27_B RNA-binding protein 8A; 99.7 5.3E-16 1.8E-20 120.2 11.6 86 8-96 17-103 (106)
207 3beg_B Splicing factor, argini 99.7 9.9E-17 3.4E-21 126.0 7.4 76 347-429 15-95 (115)
208 2dnz_A Probable RNA-binding pr 99.7 6.7E-16 2.3E-20 117.1 11.6 83 12-97 3-86 (95)
209 2cpz_A CUG triplet repeat RNA- 99.7 4.2E-16 1.4E-20 122.6 10.8 88 7-97 18-106 (115)
210 2bz2_A Negative elongation fac 99.7 2E-16 6.8E-21 125.2 8.8 79 346-432 37-115 (121)
211 2d9p_A Polyadenylate-binding p 99.7 5.7E-16 1.9E-20 119.3 11.1 90 4-98 5-95 (103)
212 2div_A TRNA selenocysteine ass 99.7 4.7E-16 1.6E-20 118.9 10.5 88 8-96 3-94 (99)
213 2dgs_A DAZ-associated protein 99.7 7.1E-16 2.4E-20 117.8 11.4 85 9-97 5-90 (99)
214 2dgo_A Cytotoxic granule-assoc 99.7 6.1E-16 2.1E-20 121.7 11.3 90 5-97 6-96 (115)
215 1x5u_A Splicing factor 3B subu 99.7 5.8E-16 2E-20 119.7 10.9 90 6-98 7-97 (105)
216 2dnl_A Cytoplasmic polyadenyla 99.7 1.1E-16 3.9E-21 125.6 6.9 77 347-426 7-86 (114)
217 1x5s_A Cold-inducible RNA-bind 99.7 5.4E-16 1.9E-20 119.2 10.5 88 7-97 5-93 (102)
218 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4E-16 1.4E-20 115.7 9.3 80 11-93 4-84 (85)
219 3md1_A Nuclear and cytoplasmic 99.7 5.7E-16 1.9E-20 114.2 10.1 80 14-96 1-81 (83)
220 2dnm_A SRP46 splicing factor; 99.7 4.4E-16 1.5E-20 119.9 9.9 88 7-97 6-94 (103)
221 1whw_A Hypothetical protein ri 99.7 5.1E-16 1.7E-20 118.7 10.2 86 10-98 4-90 (99)
222 2jrs_A RNA-binding protein 39; 99.7 8.5E-16 2.9E-20 119.1 11.5 86 8-96 20-106 (108)
223 2lea_A Serine/arginine-rich sp 99.7 1.7E-16 6E-21 128.2 7.8 121 57-183 6-127 (135)
224 2cph_A RNA binding motif prote 99.7 7.6E-16 2.6E-20 119.5 11.2 90 5-97 6-98 (107)
225 2kxn_B Transformer-2 protein h 99.7 5.9E-16 2E-20 124.0 10.7 88 7-97 39-127 (129)
226 2x1f_A MRNA 3'-END-processing 99.6 4.9E-16 1.7E-20 118.0 9.6 81 13-96 1-82 (96)
227 3p5t_L Cleavage and polyadenyl 99.6 3.1E-16 1.1E-20 117.5 8.4 79 15-96 2-83 (90)
228 2do4_A Squamous cell carcinoma 99.6 8.7E-16 3E-20 117.6 10.9 85 9-97 12-97 (100)
229 2dhg_A TRNA selenocysteine ass 99.6 1E-15 3.4E-20 118.2 11.4 86 8-96 3-90 (104)
230 2la6_A RNA-binding protein FUS 99.6 1.5E-15 5.2E-20 116.0 11.9 84 7-93 6-98 (99)
231 1wf0_A TDP-43, TAR DNA-binding 99.6 1.4E-16 4.8E-21 118.9 5.9 79 347-432 4-82 (88)
232 1wex_A Hypothetical protein (r 99.6 1.2E-15 4.2E-20 116.8 11.2 85 5-96 6-91 (104)
233 2ad9_A Polypyrimidine tract-bi 99.6 6.2E-16 2.1E-20 120.6 9.5 84 7-97 24-108 (119)
234 2e5h_A Zinc finger CCHC-type a 99.6 6.5E-16 2.2E-20 116.9 9.4 84 7-93 9-93 (94)
235 2cqb_A Peptidyl-prolyl CIS-tra 99.6 3.7E-16 1.3E-20 120.2 8.1 88 7-97 5-93 (102)
236 1x4h_A RNA-binding protein 28; 99.6 1E-15 3.6E-20 119.6 10.8 88 7-97 8-102 (111)
237 2hvz_A Splicing factor, argini 99.6 5.2E-16 1.8E-20 119.1 8.8 89 15-110 1-100 (101)
238 1x4d_A Matrin 3; structural ge 99.6 3.6E-16 1.2E-20 118.8 7.7 82 8-96 9-92 (102)
239 3ns6_A Eukaryotic translation 99.6 3.4E-16 1.2E-20 119.7 7.2 83 11-95 3-92 (100)
240 2cq1_A PTB-like protein L; RRM 99.6 9.6E-16 3.3E-20 116.6 9.7 87 4-97 5-92 (101)
241 1oo0_B CG8781-PA, drosophila Y 99.6 9.9E-16 3.4E-20 119.5 9.7 86 8-96 20-106 (110)
242 2hzc_A Splicing factor U2AF 65 99.6 6.9E-16 2.4E-20 114.9 8.4 71 347-424 5-86 (87)
243 1s79_A Lupus LA protein; RRM, 99.6 1.1E-15 3.7E-20 117.1 9.6 82 8-94 5-87 (103)
244 3v4m_A Splicing factor U2AF 65 99.6 8.2E-16 2.8E-20 118.1 8.9 81 347-427 4-96 (105)
245 1x5t_A Splicing factor 3B subu 99.6 6.8E-16 2.3E-20 117.3 8.4 84 12-98 3-88 (96)
246 3ue2_A Poly(U)-binding-splicin 99.6 1.3E-15 4.3E-20 119.2 10.1 81 347-427 19-108 (118)
247 1p1t_A Cleavage stimulation fa 99.6 7.9E-16 2.7E-20 118.8 8.8 84 10-96 4-88 (104)
248 2fy1_A RNA-binding motif prote 99.6 1.7E-15 5.8E-20 119.1 10.7 82 11-96 4-86 (116)
249 2cqd_A RNA-binding region cont 99.6 1.1E-15 3.6E-20 120.5 9.5 86 6-95 9-95 (116)
250 1x4e_A RNA binding motif, sing 99.6 6.4E-16 2.2E-20 114.5 7.6 79 12-93 3-82 (85)
251 2dng_A Eukaryotic translation 99.6 1.7E-15 5.7E-20 116.7 10.2 88 5-97 6-94 (103)
252 3s7r_A Heterogeneous nuclear r 99.6 1.2E-15 4E-20 113.6 9.0 82 7-92 4-86 (87)
253 2cpf_A RNA binding motif prote 99.6 9.9E-16 3.4E-20 116.8 8.8 83 12-97 3-89 (98)
254 2ywk_A Putative RNA-binding pr 99.6 1.5E-15 5E-20 115.1 9.7 83 8-94 10-93 (95)
255 2khc_A Testis-specific RNP-typ 99.6 7.7E-16 2.6E-20 121.8 8.5 84 7-93 33-117 (118)
256 2wbr_A GW182, gawky, LD47780P; 99.6 9.3E-16 3.2E-20 110.8 7.9 73 13-93 6-78 (89)
257 2voo_A Lupus LA protein; RNA-b 99.6 2E-15 6.8E-20 129.7 11.4 80 347-428 108-187 (193)
258 1wi8_A EIF-4B, eukaryotic tran 99.6 1.6E-15 5.3E-20 117.0 9.6 88 5-97 6-95 (104)
259 2cpe_A RNA-binding protein EWS 99.6 1.2E-15 4E-20 119.7 9.0 87 8-97 9-104 (113)
260 2cq3_A RNA-binding protein 9; 99.6 3E-15 1E-19 115.2 11.0 88 5-97 6-94 (103)
261 2dit_A HIV TAT specific factor 99.6 3.9E-15 1.3E-19 116.3 11.7 81 345-429 12-103 (112)
262 1u6f_A Tcubp1, RNA-binding pro 99.6 2.1E-15 7.2E-20 122.9 10.6 88 8-98 36-124 (139)
263 2cqi_A Nucleolysin TIAR; RNA r 99.6 2.8E-15 9.4E-20 115.4 10.4 87 6-97 7-94 (103)
264 1x4f_A Matrin 3; structural ge 99.6 1.6E-15 5.4E-20 116.9 8.9 84 6-96 17-102 (112)
265 3ucg_A Polyadenylate-binding p 99.6 1.1E-15 3.8E-20 114.3 7.9 81 12-96 4-85 (89)
266 2dgx_A KIAA0430 protein; RRM d 99.6 2.3E-15 7.9E-20 114.1 9.5 85 8-97 3-91 (96)
267 2dgv_A HnRNP M, heterogeneous 99.6 6.1E-15 2.1E-19 111.0 11.5 83 10-97 4-87 (92)
268 3ulh_A THO complex subunit 4; 99.6 3.3E-15 1.1E-19 115.9 10.3 83 8-94 23-106 (107)
269 2dh8_A DAZ-associated protein 99.6 1.8E-15 6.1E-20 116.9 8.6 87 7-97 9-96 (105)
270 3ex7_B RNA-binding protein 8A; 99.6 3.8E-15 1.3E-19 119.2 10.6 85 9-96 17-102 (126)
271 4a8x_A RNA-binding protein wit 99.6 1.7E-15 5.7E-20 113.0 8.0 81 13-96 3-85 (88)
272 3n9u_C Cleavage and polyadenyl 99.6 2.2E-15 7.6E-20 124.6 9.4 81 12-95 53-136 (156)
273 2ek1_A RNA-binding protein 12; 99.6 1E-15 3.5E-20 116.0 6.8 83 9-94 10-93 (95)
274 2m2b_A RNA-binding protein 10; 99.6 1.2E-15 4E-20 123.0 7.4 86 7-96 16-108 (131)
275 1x5o_A RNA binding motif, sing 99.6 7.3E-15 2.5E-19 115.3 11.8 87 8-95 19-111 (114)
276 2rs2_A Musashi-1, RNA-binding 99.6 2E-15 6.7E-20 117.3 8.4 86 8-97 19-105 (109)
277 1h2v_Z 20 kDa nuclear CAP bind 99.6 4.1E-15 1.4E-19 123.7 10.7 87 8-97 33-120 (156)
278 2mss_A Protein (musashi1); RNA 99.6 2E-15 6.7E-20 108.9 7.6 73 16-92 1-74 (75)
279 2cqp_A RNA-binding protein 12; 99.6 1.8E-15 6E-20 115.4 7.6 84 9-95 10-94 (98)
280 3u1l_A PRE-mRNA-splicing facto 99.6 1.4E-15 4.7E-20 133.4 7.9 79 346-430 132-231 (240)
281 2do0_A HnRNP M, heterogeneous 99.6 6.2E-15 2.1E-19 115.7 10.9 86 7-96 8-94 (114)
282 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.5E-15 5.1E-20 110.2 6.6 75 15-93 1-76 (77)
283 2dis_A Unnamed protein product 99.6 4.5E-15 1.5E-19 115.5 9.3 85 11-97 5-93 (109)
284 2cqg_A TDP-43, TAR DNA-binding 99.6 9.5E-15 3.3E-19 112.4 11.0 87 6-97 7-94 (103)
285 2cq4_A RNA binding motif prote 99.6 1.2E-15 4.2E-20 119.8 5.9 84 9-96 20-104 (114)
286 2cpj_A Non-POU domain-containi 99.6 7.1E-15 2.4E-19 112.2 9.9 85 5-97 6-90 (99)
287 2kt5_A RNA and export factor-b 99.6 1E-14 3.5E-19 116.3 10.9 84 9-96 30-114 (124)
288 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.9E-15 9.8E-20 114.6 7.2 84 8-96 13-98 (100)
289 1x4b_A Heterogeneous nuclear r 99.6 2.9E-15 9.8E-20 118.0 7.4 86 8-97 21-107 (116)
290 1x4a_A Splicing factor, argini 99.6 1.2E-14 4.3E-19 113.0 10.9 84 8-97 16-100 (109)
291 2err_A Ataxin-2-binding protei 99.6 4.7E-15 1.6E-19 115.2 8.2 85 7-96 22-107 (109)
292 1rk8_A CG8781-PA, CG8781-PA pr 99.6 5.5E-15 1.9E-19 124.1 9.2 123 60-186 11-155 (165)
293 2dnp_A RNA-binding protein 14; 99.6 8.6E-15 2.9E-19 109.6 9.3 80 8-97 3-82 (90)
294 1why_A Hypothetical protein ri 99.6 1.4E-14 4.7E-19 110.1 10.5 83 9-97 12-94 (97)
295 2krb_A Eukaryotic translation 99.6 4.8E-15 1.6E-19 108.6 7.6 67 14-83 1-74 (81)
296 2cpy_A RNA-binding protein 12; 99.6 2.7E-15 9.2E-20 117.7 6.6 85 7-96 8-94 (114)
297 2jwn_A Embryonic polyadenylate 99.6 3E-15 1E-19 119.4 6.9 84 10-97 32-116 (124)
298 2ki2_A SS-DNA binding protein 99.6 2.3E-15 7.8E-20 112.8 5.7 78 15-96 2-80 (90)
299 1wg5_A Heterogeneous nuclear r 99.6 9.7E-15 3.3E-19 112.4 9.4 82 8-94 9-92 (104)
300 2dgw_A Probable RNA-binding pr 99.6 1E-14 3.6E-19 109.4 9.3 82 9-96 5-87 (91)
301 1wez_A HnRNP H', FTP-3, hetero 99.6 7.1E-15 2.4E-19 112.5 8.5 81 8-94 9-90 (102)
302 2dgt_A RNA-binding protein 30; 99.6 1.1E-14 3.9E-19 109.4 9.4 80 8-97 4-83 (92)
303 2ytc_A PRE-mRNA-splicing facto 99.6 1.1E-14 3.8E-19 107.7 9.2 80 6-93 4-84 (85)
304 2hgl_A HNRPF protein, heteroge 99.6 4.6E-15 1.6E-19 119.2 7.6 81 9-94 39-123 (136)
305 2cpi_A CCR4-NOT transcription 99.6 5.2E-15 1.8E-19 115.4 7.6 87 8-97 9-102 (111)
306 2dnq_A RNA-binding protein 4B; 99.6 2.5E-14 8.6E-19 107.0 10.9 78 10-97 4-81 (90)
307 2lmi_A GRSF-1, G-rich sequence 99.6 4.5E-15 1.5E-19 115.0 6.7 83 7-94 4-90 (107)
308 1whx_A Hypothetical protein ri 99.6 1.1E-14 3.7E-19 113.5 8.8 78 10-95 6-83 (111)
309 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.2E-14 4E-19 118.7 9.5 82 8-92 57-139 (140)
310 1wel_A RNA-binding protein 12; 99.6 3.6E-15 1.2E-19 118.8 6.1 82 9-94 20-102 (124)
311 2nlw_A Eukaryotic translation 99.6 9E-15 3.1E-19 112.8 8.2 83 9-96 10-100 (105)
312 1x4c_A Splicing factor, argini 99.5 2.3E-14 7.7E-19 111.2 10.2 82 9-97 10-94 (108)
313 1jmt_A Splicing factor U2AF 35 99.5 2.1E-15 7.3E-20 115.6 4.3 72 353-425 20-103 (104)
314 2la4_A Nuclear and cytoplasmic 99.5 1.6E-14 5.5E-19 110.7 9.1 79 9-95 22-100 (101)
315 3pgw_S U1-70K; protein-RNA com 99.5 2.9E-15 9.8E-20 144.8 5.5 80 101-183 102-182 (437)
316 2e44_A Insulin-like growth fac 99.5 2.2E-14 7.6E-19 108.8 9.3 84 7-96 8-92 (96)
317 1iqt_A AUF1, heterogeneous nuc 99.5 7.1E-15 2.4E-19 106.0 6.2 72 16-91 1-73 (75)
318 2a3j_A U1 small nuclear ribonu 99.5 3.5E-14 1.2E-18 112.7 10.4 83 9-97 24-111 (127)
319 2e5j_A Methenyltetrahydrofolat 99.5 4.4E-14 1.5E-18 107.3 10.5 80 9-96 14-94 (97)
320 1x4g_A Nucleolysin TIAR; struc 99.5 2.9E-14 9.8E-19 110.9 9.6 81 9-97 20-100 (109)
321 2fc8_A NCL protein; structure 99.5 2.7E-14 9.3E-19 109.6 9.3 87 5-97 6-93 (102)
322 2d9o_A DNAJ (HSP40) homolog, s 99.5 5.8E-14 2E-18 106.2 10.8 78 348-432 10-94 (100)
323 2cpd_A Apobec-1 stimulating pr 99.5 4.1E-14 1.4E-18 107.9 10.1 84 4-97 5-90 (99)
324 2jvr_A Nucleolar protein 3; RN 99.5 1.4E-14 4.9E-19 112.0 7.5 80 9-95 23-104 (111)
325 1fj7_A Nucleolin RBD1, protein 99.5 4.9E-15 1.7E-19 113.6 4.9 83 10-97 13-96 (101)
326 2db1_A Heterogeneous nuclear r 99.5 2.8E-14 9.6E-19 112.4 9.2 81 99-183 15-98 (118)
327 2jvo_A Nucleolar protein 3; nu 99.5 3E-14 1E-18 110.3 9.1 81 7-97 24-104 (108)
328 2fc9_A NCL protein; structure 99.5 2.4E-14 8.1E-19 109.7 8.4 84 7-97 8-92 (101)
329 2dgu_A Heterogeneous nuclear r 99.5 3.1E-14 1.1E-18 109.5 9.0 79 9-97 6-84 (103)
330 3q2s_C Cleavage and polyadenyl 99.5 1.8E-14 6.2E-19 127.2 8.7 80 13-95 67-149 (229)
331 2e5g_A U6 snRNA-specific termi 99.5 3.9E-14 1.3E-18 106.9 9.2 80 9-96 3-82 (94)
332 2cpx_A Hypothetical protein FL 99.5 8.5E-15 2.9E-19 115.1 5.6 86 9-97 20-106 (115)
333 2cq2_A Hypothetical protein LO 99.5 1.2E-14 4.1E-19 112.0 6.1 82 8-94 19-104 (114)
334 2dnn_A RNA-binding protein 12; 99.5 6.1E-14 2.1E-18 108.2 10.1 78 101-183 16-93 (109)
335 2kvi_A Nuclear polyadenylated 99.5 4.4E-14 1.5E-18 107.1 9.1 77 9-95 5-82 (96)
336 2lcw_A RNA-binding protein FUS 99.3 1.3E-15 4.3E-20 120.1 0.0 86 9-97 2-96 (116)
337 1fjc_A Nucleolin RBD2, protein 99.5 2.3E-14 7.9E-19 108.7 6.8 83 6-96 8-91 (96)
338 2e5i_A Heterogeneous nuclear r 99.5 1.7E-13 5.9E-18 107.7 11.2 76 15-96 26-102 (124)
339 2f3j_A RNA and export factor b 99.5 1E-13 3.5E-18 117.2 10.6 83 10-96 84-167 (177)
340 1nu4_A U1A RNA binding domain; 99.5 2.8E-14 9.6E-19 108.4 6.4 82 10-97 4-90 (97)
341 2hgm_A HNRPF protein, heteroge 99.5 3.6E-14 1.2E-18 112.1 7.2 80 9-94 37-119 (126)
342 2dha_A FLJ20171 protein; RRM d 99.5 3.9E-14 1.3E-18 111.7 7.3 79 101-183 23-105 (123)
343 2hgn_A Heterogeneous nuclear r 99.5 1.9E-14 6.4E-19 116.0 5.5 80 9-94 41-121 (139)
344 1wf1_A RNA-binding protein RAL 99.5 9E-14 3.1E-18 108.2 9.2 76 10-95 23-99 (110)
345 2xnq_A Nuclear polyadenylated 99.5 1.1E-13 3.8E-18 104.9 9.5 78 8-95 16-94 (97)
346 2cqh_A IGF-II mRNA-binding pro 99.5 4.9E-14 1.7E-18 106.2 6.9 80 10-97 4-84 (93)
347 1sjr_A Polypyrimidine tract-bi 99.5 1.9E-13 6.4E-18 112.0 10.5 80 12-96 44-124 (164)
348 2dnl_A Cytoplasmic polyadenyla 99.5 2.6E-14 8.8E-19 112.0 5.1 66 10-76 4-73 (114)
349 2diu_A KIAA0430 protein; struc 99.5 3.5E-13 1.2E-17 98.2 10.4 75 12-98 6-86 (96)
350 2xs2_A Deleted in azoospermia- 99.5 3.4E-14 1.2E-18 109.1 5.3 79 10-94 5-84 (102)
351 3beg_B Splicing factor, argini 99.5 1.1E-13 3.9E-18 108.4 8.3 66 12-84 14-79 (115)
352 1x5p_A Negative elongation fac 99.4 3.7E-13 1.3E-17 102.1 9.8 82 6-97 7-88 (97)
353 3s6e_A RNA-binding protein 39; 99.4 3.2E-13 1.1E-17 104.8 9.3 77 347-427 6-92 (114)
354 2hzc_A Splicing factor U2AF 65 99.4 2.5E-13 8.4E-18 100.9 8.1 72 11-91 3-85 (87)
355 3zzy_A Polypyrimidine tract-bi 99.4 4.9E-13 1.7E-17 105.4 9.6 77 102-183 29-106 (130)
356 3d2w_A TAR DNA-binding protein 99.4 4.1E-13 1.4E-17 99.9 8.6 78 99-185 9-86 (89)
357 2j8a_A Histone-lysine N-methyl 99.4 1.7E-13 5.9E-18 105.7 6.6 77 15-94 3-94 (136)
358 3egn_A RNA-binding protein 40; 99.4 6.1E-14 2.1E-18 114.8 4.1 85 9-96 40-130 (143)
359 1wg1_A KIAA1579 protein, homol 99.4 2.5E-13 8.6E-18 101.0 6.8 74 12-95 3-77 (88)
360 3tht_A Alkylated DNA repair pr 99.4 8.5E-13 2.9E-17 122.1 9.0 76 345-426 15-97 (345)
361 2voo_A Lupus LA protein; RNA-b 99.4 2.3E-12 7.8E-17 110.6 11.0 79 101-183 109-187 (193)
362 2dnr_A Synaptojanin-1; RRM dom 99.4 2.4E-12 8.2E-17 93.0 8.8 76 344-428 3-86 (91)
363 2bz2_A Negative elongation fac 99.4 2.1E-12 7E-17 102.0 9.2 79 8-96 33-111 (121)
364 2pe8_A Splicing factor 45; RRM 99.4 3.7E-12 1.3E-16 97.5 9.9 83 10-95 4-93 (105)
365 1wf0_A TDP-43, TAR DNA-binding 99.3 5E-13 1.7E-17 99.4 4.6 76 12-97 3-79 (88)
366 3u1l_A PRE-mRNA-splicing facto 99.3 2.6E-12 8.8E-17 112.7 8.8 80 11-97 131-230 (240)
367 1owx_A Lupus LA protein, SS-B, 99.2 1.4E-11 4.8E-16 95.3 7.6 76 345-426 15-94 (121)
368 2dit_A HIV TAT specific factor 99.2 5.3E-11 1.8E-15 92.6 9.4 84 6-96 7-102 (112)
369 3tht_A Alkylated DNA repair pr 99.2 3.1E-11 1.1E-15 111.6 9.2 85 5-94 9-97 (345)
370 3v4m_A Splicing factor U2AF 65 99.2 4.3E-11 1.5E-15 91.6 7.8 81 100-183 4-97 (105)
371 1jmt_A Splicing factor U2AF 35 99.2 1.1E-11 3.9E-16 94.7 4.2 72 106-180 20-103 (104)
372 1ufw_A Synaptojanin 2; RNP dom 99.2 2.6E-11 8.9E-16 87.9 5.6 74 343-425 10-92 (95)
373 3ue2_A Poly(U)-binding-splicin 99.1 1.4E-10 4.7E-15 90.5 7.8 80 12-94 18-107 (118)
374 3dxb_A Thioredoxin N-terminall 99.1 4.5E-10 1.5E-14 98.9 10.4 78 349-426 125-211 (222)
375 2d9o_A DNAJ (HSP40) homolog, s 99.1 1.6E-09 5.5E-14 81.7 10.8 76 12-97 8-91 (100)
376 1owx_A Lupus LA protein, SS-B, 99.0 1.2E-09 4E-14 84.6 8.2 77 8-91 12-91 (121)
377 3s6e_A RNA-binding protein 39; 99.0 1.7E-09 6E-14 83.6 8.6 78 100-183 6-93 (114)
378 2l9w_A U4/U6 snRNA-associated- 98.7 1.2E-07 4E-12 70.1 8.7 71 347-423 20-95 (117)
379 2dnr_A Synaptojanin-1; RRM dom 98.6 6.7E-08 2.3E-12 69.8 6.2 75 11-96 4-86 (91)
380 1ufw_A Synaptojanin 2; RNP dom 98.5 2.8E-07 9.7E-12 66.8 6.0 74 8-92 9-91 (95)
381 1wey_A Calcipressin 1; structu 98.4 7.8E-07 2.7E-11 65.7 7.5 80 347-432 4-88 (104)
382 3dxb_A Thioredoxin N-terminall 98.4 1.2E-06 4.1E-11 76.8 10.2 104 58-182 99-212 (222)
383 2l9w_A U4/U6 snRNA-associated- 97.9 5.9E-05 2E-09 55.8 8.9 73 100-180 20-97 (117)
384 2dhx_A Poly (ADP-ribose) polym 97.9 8.6E-05 2.9E-09 54.5 9.0 89 12-114 6-99 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.8 9.9E-05 3.4E-09 54.2 7.7 69 347-424 7-80 (104)
386 1whv_A Poly(A)-specific ribonu 97.8 0.00012 4.1E-09 53.0 8.0 61 8-76 10-70 (100)
387 1uw4_A UPF3X; nonsense mediate 97.6 0.00025 8.4E-09 51.5 8.0 69 15-83 2-73 (91)
388 1uw4_A UPF3X; nonsense mediate 97.5 0.00075 2.6E-08 49.0 9.3 81 349-429 2-89 (91)
389 1wwh_A Nucleoporin 35, nucleop 97.5 0.00039 1.3E-08 52.9 7.4 70 347-424 23-93 (119)
390 3ctr_A Poly(A)-specific ribonu 97.4 0.00032 1.1E-08 51.0 5.6 55 14-76 6-60 (101)
391 1whv_A Poly(A)-specific ribonu 97.2 0.0012 4E-08 47.9 7.2 55 348-411 16-70 (100)
392 3ctr_A Poly(A)-specific ribonu 96.9 0.0009 3.1E-08 48.6 4.4 54 349-411 7-60 (101)
393 2l08_A Regulator of nonsense t 96.8 0.0011 3.6E-08 48.4 4.1 71 13-83 8-81 (97)
394 1wwh_A Nucleoporin 35, nucleop 96.7 0.005 1.7E-07 46.8 7.1 65 10-82 20-84 (119)
395 1wey_A Calcipressin 1; structu 96.6 0.0047 1.6E-07 45.5 5.9 73 101-181 5-82 (104)
396 2l08_A Regulator of nonsense t 96.5 0.0051 1.7E-07 44.8 5.7 76 102-180 10-93 (97)
397 3p3d_A Nucleoporin 53; structu 96.4 0.0029 1E-07 48.7 4.3 75 348-424 7-95 (132)
398 3pq1_A Poly(A) RNA polymerase; 96.3 0.00062 2.1E-08 65.1 0.1 63 7-74 46-108 (464)
399 3pq1_A Poly(A) RNA polymerase; 96.0 0.0033 1.1E-07 60.1 3.3 56 348-409 53-108 (464)
400 3p3d_A Nucleoporin 53; structu 93.8 0.098 3.4E-06 40.3 5.3 77 101-182 7-98 (132)
401 3d45_A Poly(A)-specific ribonu 88.8 1.4 5E-05 42.8 8.9 56 13-76 439-494 (507)
402 3d45_A Poly(A)-specific ribonu 85.7 2.2 7.7E-05 41.5 8.2 56 348-412 440-495 (507)
403 4eyt_A Telomerase associated p 84.2 7.7 0.00026 27.1 8.0 57 347-411 11-67 (129)
404 2g0c_A ATP-dependent RNA helic 66.5 12 0.0004 25.5 5.2 68 350-426 2-75 (76)
405 4e8u_A Putative uncharacterize 66.4 23 0.00079 28.5 7.5 54 349-405 13-77 (172)
406 4eyt_A Telomerase associated p 55.9 49 0.0017 23.1 8.2 58 11-75 9-66 (129)
407 3j21_T 50S ribosomal protein L 34.9 1.1E+02 0.0037 21.4 5.8 55 352-409 26-82 (86)
408 2lfv_A Protein DAMX; cell divi 32.6 14 0.00047 27.3 0.0 50 26-76 34-85 (106)
409 2lsl_A Telomerase associated p 27.3 19 0.00066 25.4 0.0 65 347-411 17-98 (137)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=6.4e-45 Score=338.24 Aligned_cols=255 Identities=19% Similarity=0.318 Sum_probs=208.4
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
...+.+.++|||+|||+++|+++|+++|+.||+|.+|.++.++.+ ..+||||+|.+.++|++|++ +|+.. +.| +.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~-~~~~~-~~g--~~ 109 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAIT-KTHKV-VGQ--NE 109 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHT-TTTCE-ETT--EE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHH-hCCcE-eCC--cE
Confidence 445677899999999999999999999999999999999998754 23499999999999999995 77765 666 67
Q ss_pred eeeeccCcccccCCCeEEEeCCCCCCcHHHHHHhhhccC-CeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCc
Q 013926 88 LQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKH 166 (434)
Q Consensus 88 i~~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G-~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~ 166 (434)
+.+.+.. .++|||+|||.++++++|+++|+.|| .|..|.++.+..+.++|+|||+|.+.++|.+|++.|++..
T Consensus 110 i~v~~~~------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 183 (292)
T 2ghp_A 110 IIVSHLT------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLK 183 (292)
T ss_dssp CEEEECC------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCE
T ss_pred EEEEECC------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 7776653 57899999999999999999999999 9999999998888889999999999999999999999977
Q ss_pred cCCCCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCC
Q 013926 167 KMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQN 246 (434)
Q Consensus 167 ~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 246 (434)
++|+ .|.|.++.+.......
T Consensus 184 -~~g~--~l~v~~a~~~~~~~~~--------------------------------------------------------- 203 (292)
T 2ghp_A 184 -IEGY--TLVTKVSNPLEKSKRT--------------------------------------------------------- 203 (292)
T ss_dssp -ETTE--ECEEEECCCC---------------------------------------------------------------
T ss_pred -eCCc--EEEEEECCCCcccccc---------------------------------------------------------
Confidence 6776 6788888654211000
Q ss_pred CCCCcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 247 QPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVAN 326 (434)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (434)
T Consensus 204 -------------------------------------------------------------------------------- 203 (292)
T 2ghp_A 204 -------------------------------------------------------------------------------- 203 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCccCCCCceEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEEecCC-CCCeeeEEEEEeCCHHHHH
Q 013926 327 SNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVFVDKA-TGVSKCFGFVSYESPASAQ 404 (434)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~-~t~~~L~~~F~~fG~v~~v~i~~~~~-~g~~~g~afV~f~~~~~A~ 404 (434)
.......++|||+|||.+ +|+++|+++|+.||.|.+|+|+.+.. +|.++|||||+|.+.++|.
T Consensus 204 ---------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~ 268 (292)
T 2ghp_A 204 ---------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAE 268 (292)
T ss_dssp ------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHH
T ss_pred ---------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHH
Confidence 001124578999999999 99999999999999999999998865 4999999999999999999
Q ss_pred HHHHHhCCceeCCeEEEEEEecCCc
Q 013926 405 NAIAMMNGCQLGGKKLKVQLKRDNK 429 (434)
Q Consensus 405 ~A~~~l~g~~l~g~~i~v~~a~~~~ 429 (434)
+|+ .|||..|+|++|+|.||+.++
T Consensus 269 ~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 269 RAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp HHG-GGTTEEETTEEEEEEECCCCC
T ss_pred HHH-HhcCCEECCcEEEEEEecCCC
Confidence 999 999999999999999999874
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=5.4e-44 Score=330.68 Aligned_cols=249 Identities=22% Similarity=0.352 Sum_probs=217.3
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
++...++++|||+|||+++|+++|+++|+.|| |.+|.+-+.+ +||||+|.+.++|++|++.+|+.. +.| +.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~-----g~afV~f~~~~~A~~A~~~l~~~~-~~g--~~ 86 (284)
T 3smz_A 16 ERQFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYK-----GTAFVTLLNGEQAEAAINAFHQSR-LRE--RE 86 (284)
T ss_dssp HHHHHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTT-----TEEEEEESSHHHHHHHHHHHTTCE-ETT--EE
T ss_pred hccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCC-----CEEEEEeCCHHHHHHHHHHcCCCe-eCC--eE
Confidence 45566789999999999999999999999999 9999883322 299999999999999999999876 566 67
Q ss_pred eeeeccCcccccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCc
Q 013926 88 LQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKH 166 (434)
Q Consensus 88 i~~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~ 166 (434)
+.+.+.. ...+|||+|||.++++++|+++|+.||.|..+.++.+. +|.++|+|||+|.+.++|.+|++.+++..
T Consensus 87 i~v~~~~-----~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~ 161 (284)
T 3smz_A 87 LSVQLQP-----TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKP 161 (284)
T ss_dssp CEEEECC-----CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEecC-----CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 7776644 34789999999999999999999999999999998876 78899999999999999999999999976
Q ss_pred cCCCCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCC
Q 013926 167 KMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQN 246 (434)
Q Consensus 167 ~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 246 (434)
++|+ .|.|.++......
T Consensus 162 -~~g~--~i~v~~a~~~~~~------------------------------------------------------------ 178 (284)
T 3smz_A 162 -LGPR--TLYVHWTDAGQLT------------------------------------------------------------ 178 (284)
T ss_dssp -ETTE--ECEEEECCGGGCC------------------------------------------------------------
T ss_pred -eCCc--EEEEEECCCCCCC------------------------------------------------------------
Confidence 6776 6788888543100
Q ss_pred CCCCcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 247 QPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVAN 326 (434)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (434)
T Consensus 179 -------------------------------------------------------------------------------- 178 (284)
T 3smz_A 179 -------------------------------------------------------------------------------- 178 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCccCCCCceEEEcCCCCCC-CHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHH
Q 013926 327 SNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEF-GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 405 (434)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~-t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 405 (434)
......++|||+|||.++ |+++|+++|+.||.|.+++|+.+. +|.++|+|||+|.+.++|.+
T Consensus 179 ----------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~ 241 (284)
T 3smz_A 179 ----------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEE 241 (284)
T ss_dssp ----------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHH
T ss_pred ----------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHH
Confidence 001145789999999995 999999999999999999999986 89999999999999999999
Q ss_pred HHHHhCCceeCCeEEEEEEecCCcC
Q 013926 406 AIAMMNGCQLGGKKLKVQLKRDNKQ 430 (434)
Q Consensus 406 A~~~l~g~~l~g~~i~v~~a~~~~~ 430 (434)
|+..|||..|+|++|+|.+++.+..
T Consensus 242 A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 242 AQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHhCCCccCCeEEEEEEecCCCc
Confidence 9999999999999999999988764
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=5.8e-33 Score=245.00 Aligned_cols=168 Identities=30% Similarity=0.500 Sum_probs=147.9
Q ss_pred CCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEe
Q 013926 100 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 178 (434)
Q Consensus 100 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~ 178 (434)
..++|||+|||+++|+++|+++|+.||.|..|.|+++. ++.++|||||+|.+.++|.+|++.+++.. +.|+ .+.+.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~-~~g~--~i~~~ 90 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDV-IKGK--PVRIM 90 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhh-cCCc--ccccc
Confidence 35789999999999999999999999999999999886 68899999999999999999999999976 6776 46677
Q ss_pred eccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCC
Q 013926 179 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 258 (434)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 258 (434)
++.........
T Consensus 91 ~~~~~~~~~~~--------------------------------------------------------------------- 101 (213)
T 4f02_A 91 WSQRDPSLRKS--------------------------------------------------------------------- 101 (213)
T ss_dssp ECCCCTHHHHH---------------------------------------------------------------------
T ss_pred ccccccccccc---------------------------------------------------------------------
Confidence 66543221111
Q ss_pred CCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 259 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 338 (434)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (434)
T Consensus 102 -------------------------------------------------------------------------------- 101 (213)
T 4f02_A 102 -------------------------------------------------------------------------------- 101 (213)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 013926 339 SGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK 418 (434)
Q Consensus 339 ~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~ 418 (434)
..++|||+|||.++|+++|+++|+.||.|.+++|+.+. +.++|||||+|.+.++|++|++.|||..|+|+
T Consensus 102 --------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~ 171 (213)
T 4f02_A 102 --------GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 171 (213)
T ss_dssp --------CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred --------ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 23579999999999999999999999999999999984 45899999999999999999999999999999
Q ss_pred EEEEEEecCCc
Q 013926 419 KLKVQLKRDNK 429 (434)
Q Consensus 419 ~i~v~~a~~~~ 429 (434)
+|+|.+|+.++
T Consensus 172 ~i~V~~a~~~~ 182 (213)
T 4f02_A 172 KVFVGRFKSRK 182 (213)
T ss_dssp ECEEEECCCHH
T ss_pred EEEEEEcCCCc
Confidence 99999998764
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-32 Score=233.85 Aligned_cols=165 Identities=31% Similarity=0.536 Sum_probs=148.2
Q ss_pred CeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeecc
Q 013926 102 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 181 (434)
Q Consensus 102 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~ 181 (434)
++|||+|||.++++++|+++|+.||.|..|.+..+..+.++|+|||+|.+.++|.+|++.+++.. +.|+ .|.+.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~g~--~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQ-IENN--IVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCc-cCCC--eeEEEEcC
Confidence 57999999999999999999999999999999999888899999999999999999999999987 6666 56777763
Q ss_pred ChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCCCC
Q 013926 182 TEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGN 261 (434)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (434)
....
T Consensus 78 ~~~~---------------------------------------------------------------------------- 81 (166)
T 3md3_A 78 QSQQ---------------------------------------------------------------------------- 81 (166)
T ss_dssp CCCC----------------------------------------------------------------------------
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 3200
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 262 AMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGG 341 (434)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (434)
T Consensus 82 -------------------------------------------------------------------------------- 81 (166)
T 3md3_A 82 -------------------------------------------------------------------------------- 81 (166)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 013926 342 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 421 (434)
Q Consensus 342 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~ 421 (434)
......++|||+|||.++|+++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|||..++|++|+
T Consensus 82 -~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 82 -SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160 (166)
T ss_dssp -CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred -CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Confidence 0112457899999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEec
Q 013926 422 VQLKR 426 (434)
Q Consensus 422 v~~a~ 426 (434)
|.||+
T Consensus 161 v~~a~ 165 (166)
T 3md3_A 161 INWAA 165 (166)
T ss_dssp EEESC
T ss_pred EEecC
Confidence 99986
No 5
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.6e-32 Score=241.86 Aligned_cols=182 Identities=28% Similarity=0.449 Sum_probs=154.5
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEee
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 179 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~ 179 (434)
.++|||+|||.++++++|+++|+.||.|..|.++.+. ++.++|+|||+|.+.++|.+|++.+++.. ++|+ .|.|.+
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g~--~l~v~~ 104 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVM-LGGR--NIKVGR 104 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCC-CC-C--CCEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCe-eCCe--eEEEec
Confidence 5799999999999999999999999999999998886 78899999999999999999999999976 7777 467777
Q ss_pred ccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCC
Q 013926 180 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 259 (434)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 259 (434)
+...............
T Consensus 105 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 120 (216)
T 2qfj_A 105 PSNIGQAQPIIDQLAE---------------------------------------------------------------- 120 (216)
T ss_dssp CSCCGGGHHHHHHHHH----------------------------------------------------------------
T ss_pred CCCccccchhhhhhhc----------------------------------------------------------------
Confidence 7554322211111000
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 260 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 339 (434)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (434)
T Consensus 121 -------------------------------------------------------------------------------- 120 (216)
T 2qfj_A 121 -------------------------------------------------------------------------------- 120 (216)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 013926 340 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 419 (434)
Q Consensus 340 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~ 419 (434)
.....++|||+|||.++|+++|+++|+.||.|.+++|+.++.+|+++|||||+|.+.++|.+|++.|||..|+|++
T Consensus 121 ----~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 196 (216)
T 2qfj_A 121 ----EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 196 (216)
T ss_dssp ----HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSB
T ss_pred ----ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcE
Confidence 0114478999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEEEecCCcCCCC
Q 013926 420 LKVQLKRDNKQNKP 433 (434)
Q Consensus 420 i~v~~a~~~~~~~~ 433 (434)
|+|.+|+.++.+.+
T Consensus 197 i~V~~a~~~~~~~~ 210 (216)
T 2qfj_A 197 LRVGKAVTPPMPLL 210 (216)
T ss_dssp CEEEECSSCSSTTS
T ss_pred EEEEEecCCCCCCC
Confidence 99999999876543
No 6
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=4.8e-32 Score=231.87 Aligned_cols=169 Identities=42% Similarity=0.782 Sum_probs=153.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCC--ccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCcee
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTR--ASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 89 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~--~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~ 89 (434)
++++|||+|||+++|+++|+++|+.||+|.+|.++.++.++ .++ ||||+|.+.++|++|++.+|+..+..+..+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999999876 666 999999999999999999999888877778888
Q ss_pred eeccCccccc--CCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCcc
Q 013926 90 VKYADGELER--LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 167 (434)
Q Consensus 90 ~~~~~~~~~~--~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~ 167 (434)
+.+....... ..++|||+|||.++++++|+++|+.||.|..+.+..+.+|.++|+|||+|.+.++|.+|++.||+..+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 161 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcc
Confidence 8777654432 46899999999999999999999999999999999998899999999999999999999999999887
Q ss_pred CCCCcceEEEeecc
Q 013926 168 MEGSSVPLVVKWAD 181 (434)
Q Consensus 168 ~~g~~~~i~v~~a~ 181 (434)
++|+..+|.|.||.
T Consensus 162 ~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 162 MEGCSSPMVVKFAD 175 (175)
T ss_dssp CTTCSSCCEEEECC
T ss_pred cCCCCCCeEEEecC
Confidence 87766689999874
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.5e-31 Score=233.27 Aligned_cols=176 Identities=21% Similarity=0.391 Sum_probs=145.8
Q ss_pred cCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEE
Q 013926 99 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 177 (434)
Q Consensus 99 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v 177 (434)
...++|||+|||.++++++|+++|+.||.|..|.++.+. ++.++|||||+|.+.++|.+|++. ++.. ++|+ .|.+
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~-~~g~--~l~v 86 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHK-VDGR--VVEP 86 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCE-ETTE--ECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCE-ECCE--Eeee
Confidence 446899999999999999999999999999999999886 688999999999999999999976 6654 7776 5677
Q ss_pred eeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCC
Q 013926 178 KWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 257 (434)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 257 (434)
.++.........
T Consensus 87 ~~~~~~~~~~~~-------------------------------------------------------------------- 98 (196)
T 1l3k_A 87 KRAVSREDSQRP-------------------------------------------------------------------- 98 (196)
T ss_dssp EECCC---------------------------------------------------------------------------
T ss_pred ecccCccccccc--------------------------------------------------------------------
Confidence 777543211000
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 258 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 337 (434)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (434)
T Consensus 99 -------------------------------------------------------------------------------- 98 (196)
T 1l3k_A 99 -------------------------------------------------------------------------------- 98 (196)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 013926 338 GSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 417 (434)
Q Consensus 338 ~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g 417 (434)
......++|||+|||.++|+++|+++|+.||.|.+++|+.++.+|.++|||||+|.+.++|.+|+.. +|..|+|
T Consensus 99 -----~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G 172 (196)
T 1l3k_A 99 -----GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNG 172 (196)
T ss_dssp ---------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETT
T ss_pred -----ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECC
Confidence 0011347899999999999999999999999999999999988999999999999999999999996 8999999
Q ss_pred eEEEEEEecCCcCCC
Q 013926 418 KKLKVQLKRDNKQNK 432 (434)
Q Consensus 418 ~~i~v~~a~~~~~~~ 432 (434)
+.|+|.+|..+...+
T Consensus 173 ~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 173 HNCEVRKALSKQEMA 187 (196)
T ss_dssp EECEEEECC------
T ss_pred EEEEEEecCChhHhc
Confidence 999999999887654
No 8
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=8.6e-32 Score=237.50 Aligned_cols=176 Identities=24% Similarity=0.397 Sum_probs=148.7
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
......+.++|||+|||+++||++|+++|++||+|.+|++++++.++.++ ||||+|.+.++|.+||+.+|+.. +.|
T Consensus 8 p~~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~-~~g-- 84 (213)
T 4f02_A 8 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDV-IKG-- 84 (213)
T ss_dssp -------CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhh-cCC--
Confidence 34455678999999999999999999999999999999999999999988 99999999999999999998875 555
Q ss_pred CceeeeccCccc---ccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 013926 86 SPLQVKYADGEL---ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 162 (434)
Q Consensus 86 ~~i~~~~~~~~~---~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l 162 (434)
+.+++.++.... .....+|||+|||..+++++|+++|+.||.|..+.++.+.. .++|+|||+|.+.++|.+|++.|
T Consensus 85 ~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 85 KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp EECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHh
Confidence 666666654332 23367899999999999999999999999999999988754 36999999999999999999999
Q ss_pred cCCccCCCCcceEEEeeccChHHHHHH
Q 013926 163 NGKHKMEGSSVPLVVKWADTEKERQAR 189 (434)
Q Consensus 163 ~~~~~~~g~~~~i~v~~a~~~~~~~~~ 189 (434)
||.. ++|+ .|.|.++.++.++...
T Consensus 164 ng~~-~~g~--~i~V~~a~~~~~~~~~ 187 (213)
T 4f02_A 164 NGML-LNDR--KVFVGRFKSRKEREAE 187 (213)
T ss_dssp TTCE-ETTE--ECEEEECCCHHHHHHH
T ss_pred CCCE-ECCE--EEEEEEcCCCcccchh
Confidence 9976 7777 6899999887665444
No 9
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.5e-31 Score=227.14 Aligned_cols=163 Identities=28% Similarity=0.512 Sum_probs=147.1
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEee
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 179 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~ 179 (434)
.++|||+|||.++++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|++.+++.. ++|+ .|.+.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g~--~l~v~~ 79 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGIT-VRNK--RLKVSY 79 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCE-eCCc--EEEEEe
Confidence 4789999999999999999999999999999998885 78889999999999999999999999976 6766 577877
Q ss_pred ccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCC
Q 013926 180 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 259 (434)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 259 (434)
+.+..
T Consensus 80 ~~~~~--------------------------------------------------------------------------- 84 (168)
T 1b7f_A 80 ARPGG--------------------------------------------------------------------------- 84 (168)
T ss_dssp CCCCS---------------------------------------------------------------------------
T ss_pred cCCCc---------------------------------------------------------------------------
Confidence 74320
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 260 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 339 (434)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (434)
T Consensus 85 -------------------------------------------------------------------------------- 84 (168)
T 1b7f_A 85 -------------------------------------------------------------------------------- 84 (168)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC--
Q 013926 340 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG-- 417 (434)
Q Consensus 340 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g-- 417 (434)
.....++|||+|||.++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|||..+.|
T Consensus 85 ----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 160 (168)
T 1b7f_A 85 ----ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGS 160 (168)
T ss_dssp ----STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred ----ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCC
Confidence 01134789999999999999999999999999999999998899999999999999999999999999999988
Q ss_pred eEEEEEEe
Q 013926 418 KKLKVQLK 425 (434)
Q Consensus 418 ~~i~v~~a 425 (434)
++|+|.||
T Consensus 161 ~~l~V~~A 168 (168)
T 1b7f_A 161 QPLSVRLA 168 (168)
T ss_dssp SCCEEEEC
T ss_pred eEEEEEeC
Confidence 99999986
No 10
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.98 E-value=2.3e-31 Score=225.74 Aligned_cols=163 Identities=27% Similarity=0.564 Sum_probs=146.2
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEee
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 179 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~ 179 (434)
+++|||+|||.++++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|++.+++.. ++|+ .|.+.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g~--~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLR-LQTK--TIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCc-cCCc--eEEEEe
Confidence 4789999999999999999999999999999999887 88899999999999999999999999976 6666 577777
Q ss_pred ccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCC
Q 013926 180 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 259 (434)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 259 (434)
+.+..
T Consensus 79 ~~~~~--------------------------------------------------------------------------- 83 (167)
T 1fxl_A 79 ARPSS--------------------------------------------------------------------------- 83 (167)
T ss_dssp CCCCC---------------------------------------------------------------------------
T ss_pred cCCCc---------------------------------------------------------------------------
Confidence 64320
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 260 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 339 (434)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (434)
T Consensus 84 -------------------------------------------------------------------------------- 83 (167)
T 1fxl_A 84 -------------------------------------------------------------------------------- 83 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 013926 340 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 419 (434)
Q Consensus 340 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~ 419 (434)
.....++|||+|||.++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 84 ----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 84 ----ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp ----GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred ----ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc
Confidence 0013468999999999999999999999999999999999889999999999999999999999999999999965
Q ss_pred --EEEEEe
Q 013926 420 --LKVQLK 425 (434)
Q Consensus 420 --i~v~~a 425 (434)
|+|+||
T Consensus 160 ~~i~v~~A 167 (167)
T 1fxl_A 160 EPITVKFA 167 (167)
T ss_dssp SCCEEEEC
T ss_pred cceEEEeC
Confidence 888876
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=2.1e-31 Score=227.87 Aligned_cols=167 Identities=29% Similarity=0.538 Sum_probs=148.2
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCC---CcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEE
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ---TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 177 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~---~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v 177 (434)
.++|||+|||.++++++|+++|+.||.|..+.++.+..+ .++|||||+|.+.++|.+|++.+++..++++....+.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 468999999999999999999999999999999988755 78999999999999999999999998877777777888
Q ss_pred eeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCC
Q 013926 178 KWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 257 (434)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 257 (434)
.++.....
T Consensus 83 ~~~~~~~~------------------------------------------------------------------------ 90 (175)
T 3nmr_A 83 KPADSEKN------------------------------------------------------------------------ 90 (175)
T ss_dssp EECGGGCC------------------------------------------------------------------------
T ss_pred cccccccc------------------------------------------------------------------------
Confidence 77643310
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 258 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 337 (434)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (434)
T Consensus 91 -------------------------------------------------------------------------------- 90 (175)
T 3nmr_A 91 -------------------------------------------------------------------------------- 90 (175)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC-
Q 013926 338 GSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG- 416 (434)
Q Consensus 338 ~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~- 416 (434)
.....++|||+|||.++|+++|+++|+.||.|.+++++.++ +|.++|||||+|.+.++|.+|++.|||..+.
T Consensus 91 ------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 91 ------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp ------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT
T ss_pred ------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 01144689999999999999999999999999999999995 6999999999999999999999999998776
Q ss_pred --CeEEEEEEec
Q 013926 417 --GKKLKVQLKR 426 (434)
Q Consensus 417 --g~~i~v~~a~ 426 (434)
|++|+|+||.
T Consensus 164 g~~~~l~V~~ad 175 (175)
T 3nmr_A 164 GCSSPMVVKFAD 175 (175)
T ss_dssp TCSSCCEEEECC
T ss_pred CCCCCeEEEecC
Confidence 4999999984
No 12
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=1.7e-30 Score=220.47 Aligned_cols=164 Identities=27% Similarity=0.521 Sum_probs=148.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeee
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 91 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~ 91 (434)
++++|||+|||+++++++|+++|+.||.|.++.++.++.++.++ ||||+|.+.++|++|++.+|+.. +.| +.+.+.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g--~~l~v~ 77 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLR-LQT--KTIKVS 77 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCc-cCC--ceEEEE
Confidence 36899999999999999999999999999999999999888888 99999999999999999999876 556 777777
Q ss_pred ccCcccc-cCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 013926 92 YADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 169 (434)
Q Consensus 92 ~~~~~~~-~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~ 169 (434)
++.+... ....+|+|+|||..+++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|++.|+|.. ++
T Consensus 78 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~ 156 (167)
T 1fxl_A 78 YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK-PS 156 (167)
T ss_dssp ECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC-CT
T ss_pred ecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCc-cC
Confidence 7764433 346889999999999999999999999999999998886 78899999999999999999999999986 78
Q ss_pred CCcceEEEeec
Q 013926 170 GSSVPLVVKWA 180 (434)
Q Consensus 170 g~~~~i~v~~a 180 (434)
|+.++|.|.||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 88778999886
No 13
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.3e-31 Score=227.42 Aligned_cols=164 Identities=25% Similarity=0.476 Sum_probs=145.4
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEee
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 179 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~ 179 (434)
+++|||+|||.++++++|+++|+.||.|..|.++.+. +|.++|||||+|.+.++|.+|++. + ..++|+ .|.+.+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~-~~~~g~--~i~v~~ 77 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--Q-HILDGK--VIDPKR 77 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--C-CEETTE--ECCCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--c-cccCCe--Eccccc
Confidence 4789999999999999999999999999999999886 788999999999999999999984 3 346776 456666
Q ss_pred ccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCC
Q 013926 180 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 259 (434)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 259 (434)
+.......
T Consensus 78 ~~~~~~~~------------------------------------------------------------------------ 85 (167)
T 2cjk_A 78 AIPRDEQD------------------------------------------------------------------------ 85 (167)
T ss_dssp CCCHHHHH------------------------------------------------------------------------
T ss_pred ccchhhcc------------------------------------------------------------------------
Confidence 65542210
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 260 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 339 (434)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (434)
T Consensus 86 -------------------------------------------------------------------------------- 85 (167)
T 2cjk_A 86 -------------------------------------------------------------------------------- 85 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 013926 340 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 419 (434)
Q Consensus 340 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~ 419 (434)
..++|||+|||.++|+++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++ +||..++|++
T Consensus 86 -------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 157 (167)
T 2cjk_A 86 -------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRK 157 (167)
T ss_dssp -------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSC
T ss_pred -------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeE
Confidence 23589999999999999999999999999999999998899999999999999999999998 8999999999
Q ss_pred EEEEEecCCc
Q 013926 420 LKVQLKRDNK 429 (434)
Q Consensus 420 i~v~~a~~~~ 429 (434)
|+|.+|+++.
T Consensus 158 i~V~~a~pk~ 167 (167)
T 2cjk_A 158 IEIKRAEPRH 167 (167)
T ss_dssp EEEEECCCCC
T ss_pred EEEeecCCCC
Confidence 9999998763
No 14
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=2.1e-30 Score=220.07 Aligned_cols=164 Identities=29% Similarity=0.513 Sum_probs=147.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeee
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 91 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~ 91 (434)
++++|||+|||+++++++|+++|+.||+|.+|.++.++.++.++ ||||+|.+.++|++|++.+++.. +.| +.+.+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g--~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGIT-VRN--KRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCE-eCC--cEEEEE
Confidence 57899999999999999999999999999999999998888888 99999999999999999998876 556 778887
Q ss_pred ccCcccc-cCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 013926 92 YADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 169 (434)
Q Consensus 92 ~~~~~~~-~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~ 169 (434)
++..... ...++|+|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|++.|++.. ++
T Consensus 79 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~ 157 (168)
T 1b7f_A 79 YARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI-PE 157 (168)
T ss_dssp ECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC-CT
T ss_pred ecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCE-ec
Confidence 7765443 346899999999999999999999999999999999887 78899999999999999999999999986 67
Q ss_pred CCcceEEEeec
Q 013926 170 GSSVPLVVKWA 180 (434)
Q Consensus 170 g~~~~i~v~~a 180 (434)
|...+|.|.||
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 75567888876
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=3.5e-29 Score=230.98 Aligned_cols=77 Identities=19% Similarity=0.435 Sum_probs=72.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG-GKKLKVQ 423 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~-g~~i~v~ 423 (434)
.+.+++|||+|||.++|+++|+++|+.||.|.+|+|+.++ +|||||+|.+.++|.+|++.|||..|. |++|+|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 3467899999999999999999999999999999998654 589999999999999999999999999 9999999
Q ss_pred Eec
Q 013926 424 LKR 426 (434)
Q Consensus 424 ~a~ 426 (434)
|||
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 997
No 16
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=1.2e-29 Score=216.28 Aligned_cols=157 Identities=29% Similarity=0.510 Sum_probs=137.8
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhcc----C-------CeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIY----G-------TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME 169 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~----G-------~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~ 169 (434)
.++|||+|||.++++++|+++|+.| | .|..+.+..+ +|+|||+|.+.++|.+|+ .+++.. ++
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-----~g~afV~f~~~~~A~~A~-~~~~~~-~~ 76 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGII-FQ 76 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-----TTEEEEEESSHHHHHHHG-GGTTCE-ET
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-----CCEEEEEeCCHHHHHHHH-HhCCcE-ec
Confidence 4789999999999999999999999 6 6777776644 899999999999999999 899976 67
Q ss_pred CCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCC
Q 013926 170 GSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 249 (434)
Q Consensus 170 g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 249 (434)
|+ .|.+.++....
T Consensus 77 g~--~i~v~~~~~~~----------------------------------------------------------------- 89 (172)
T 2g4b_A 77 GQ--SLKIRRPHDYQ----------------------------------------------------------------- 89 (172)
T ss_dssp TE--ECEEECCSSCC-----------------------------------------------------------------
T ss_pred Cc--eeeecCCcccC-----------------------------------------------------------------
Confidence 77 56676552210
Q ss_pred CcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 250 FHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 329 (434)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (434)
T Consensus 90 -------------------------------------------------------------------------------- 89 (172)
T 2g4b_A 90 -------------------------------------------------------------------------------- 89 (172)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013926 330 STSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409 (434)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 409 (434)
.....++|||+|||.++|+++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++.
T Consensus 90 --------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 90 --------------PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp --------------CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred --------------CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 001246899999999999999999999999999999999988999999999999999999999999
Q ss_pred hCCceeCCeEEEEEEe
Q 013926 410 MNGCQLGGKKLKVQLK 425 (434)
Q Consensus 410 l~g~~l~g~~i~v~~a 425 (434)
|||..++|++|+|.+|
T Consensus 156 l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 156 LNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred cCCCEECCeEEEEEeC
Confidence 9999999999999997
No 17
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=1.6e-29 Score=220.37 Aligned_cols=174 Identities=23% Similarity=0.390 Sum_probs=142.9
Q ss_pred ccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCC
Q 013926 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGA 84 (434)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~ 84 (434)
....+..+.++|||+|||+++|+++|+++|+.||.|.+|.++.++.++.++ ||||+|.+.++|++|++. ++.. +.|
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~-~~g- 81 (196)
T 1l3k_A 5 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHK-VDG- 81 (196)
T ss_dssp ---CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCE-ETT-
T ss_pred cCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCE-ECC-
Confidence 344566788999999999999999999999999999999999999888888 999999999999999987 4543 666
Q ss_pred CCceeeeccCcccc-------cCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHH
Q 013926 85 SSPLQVKYADGELE-------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQAL 156 (434)
Q Consensus 85 ~~~i~~~~~~~~~~-------~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~ 156 (434)
+.+.+.++..... ...++|||+|||.++++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.
T Consensus 82 -~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 160 (196)
T 1l3k_A 82 -RVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160 (196)
T ss_dssp -EECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred -EEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHH
Confidence 6666666543321 225799999999999999999999999999999999886 7889999999999999999
Q ss_pred HHHHHhcCCccCCCCcceEEEeeccChHHHH
Q 013926 157 AALEAINGKHKMEGSSVPLVVKWADTEKERQ 187 (434)
Q Consensus 157 ~a~~~l~~~~~~~g~~~~i~v~~a~~~~~~~ 187 (434)
+|++. ++.. ++|+ .|.|.++.++.+..
T Consensus 161 ~A~~~-~~~~-~~G~--~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 161 KIVIQ-KYHT-VNGH--NCEVRKALSKQEMA 187 (196)
T ss_dssp HHHHC-SCCE-ETTE--ECEEEECC------
T ss_pred HHHHh-CCcE-ECCE--EEEEEecCChhHhc
Confidence 99986 6654 7887 68899998776543
No 18
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=3.5e-29 Score=218.50 Aligned_cols=182 Identities=26% Similarity=0.444 Sum_probs=143.7
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhcc----C-------CeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIY----G-------TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME 169 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~----G-------~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~ 169 (434)
.++|||+|||.++++++|+++|+.| | .|..+.+. .++|||||+|.+.++|.+|+ .|++.. ++
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~-~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGII-FQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEE-ET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCE-Ec
Confidence 5789999999999999999999999 5 55666554 34899999999999999999 899976 67
Q ss_pred CCcceEEEeeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCC
Q 013926 170 GSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 249 (434)
Q Consensus 170 g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 249 (434)
|+ .|.|.++...... .+. . .
T Consensus 77 g~--~i~v~~~~~~~~~------------------------------~~~----~----------~-------------- 96 (198)
T 2yh0_A 77 GQ--SLKIRRPHDYQPL------------------------------PGM----S----------E-------------- 96 (198)
T ss_dssp TE--EEEEECCCCCCCC------------------------------CCS----S----------S--------------
T ss_pred Cc--eEEEeCCCCCCCC------------------------------CCC----c----------C--------------
Confidence 76 5788776432000 000 0 0
Q ss_pred CcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 250 FHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 329 (434)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (434)
..... .+
T Consensus 97 --------------------------~~~~~----------------------~~------------------------- 103 (198)
T 2yh0_A 97 --------------------------NPSVY----------------------VP------------------------- 103 (198)
T ss_dssp --------------------------CSSCC----------------------CT-------------------------
T ss_pred --------------------------CCcCC----------------------CC-------------------------
Confidence 00000 00
Q ss_pred CCCCCCCCCCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013926 330 STSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409 (434)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 409 (434)
...........++|||+|||.++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++.
T Consensus 104 --------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 175 (198)
T 2yh0_A 104 --------GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 175 (198)
T ss_dssp --------TSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHH
T ss_pred --------CCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 000001123568999999999999999999999999999999999988999999999999999999999999
Q ss_pred hCCceeCCeEEEEEEecCCcC
Q 013926 410 MNGCQLGGKKLKVQLKRDNKQ 430 (434)
Q Consensus 410 l~g~~l~g~~i~v~~a~~~~~ 430 (434)
|||..|+|++|+|.+|+.+..
T Consensus 176 l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 176 LNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp HTTCEETTEECEEEESCCCCC
T ss_pred cCCCEECCEEEEEEECCCCCC
Confidence 999999999999999988764
No 19
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-29 Score=213.81 Aligned_cols=161 Identities=22% Similarity=0.427 Sum_probs=140.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeeccC
Q 013926 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYAD 94 (434)
Q Consensus 15 ~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~~ 94 (434)
++|||+|||+++|+++|+++|+.||.|.+|.++.++.+...+||||+|.+.++|.+|++.+|+.. +.| +.+.+.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~g--~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQ-IEN--NIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCc-cCC--CeeEEEEcC
Confidence 68999999999999999999999999999999999864433399999999999999999999876 555 677776665
Q ss_pred ccc---ccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 013926 95 GEL---ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEG 170 (434)
Q Consensus 95 ~~~---~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g 170 (434)
... .....+|||+|||.++++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|++.|++.. ++|
T Consensus 78 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g 156 (166)
T 3md3_A 78 QSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD-LNG 156 (166)
T ss_dssp CCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE-ETT
T ss_pred CCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc-cCC
Confidence 433 3346789999999999999999999999999999998885 78899999999999999999999999987 777
Q ss_pred CcceEEEeecc
Q 013926 171 SSVPLVVKWAD 181 (434)
Q Consensus 171 ~~~~i~v~~a~ 181 (434)
+ .|.|.||.
T Consensus 157 ~--~i~v~~a~ 165 (166)
T 3md3_A 157 R--PLRINWAA 165 (166)
T ss_dssp E--ECEEEESC
T ss_pred c--EEEEEecC
Confidence 7 67888874
No 20
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=3e-29 Score=222.10 Aligned_cols=169 Identities=20% Similarity=0.331 Sum_probs=145.8
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
....+.++|||+|||+++|+++|+++|+.||.|.+|.++.++.++.++ ||||+|.+.++|.+|++.+|+.. +.| +.
T Consensus 23 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g--~~ 99 (216)
T 2qfj_A 23 GALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVM-LGG--RN 99 (216)
T ss_dssp HHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCC-CC---CC
T ss_pred cccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCe-eCC--ee
Confidence 344567899999999999999999999999999999999998888888 99999999999999999998875 666 66
Q ss_pred eeeeccCccc------------ccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHH
Q 013926 88 LQVKYADGEL------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQ 154 (434)
Q Consensus 88 i~~~~~~~~~------------~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~ 154 (434)
+.+.++.... ....++|||+|||.++++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++
T Consensus 100 l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~ 179 (216)
T 2qfj_A 100 IKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQS 179 (216)
T ss_dssp CEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred EEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHH
Confidence 7776654332 2335899999999999999999999999999999999886 78899999999999999
Q ss_pred HHHHHHHhcCCccCCCCcceEEEeeccCh
Q 013926 155 ALAALEAINGKHKMEGSSVPLVVKWADTE 183 (434)
Q Consensus 155 a~~a~~~l~~~~~~~g~~~~i~v~~a~~~ 183 (434)
|.+|++.|++.. ++|+ .|.|.++...
T Consensus 180 A~~A~~~l~g~~-~~g~--~i~V~~a~~~ 205 (216)
T 2qfj_A 180 SQDAVSSMNLFD-LGGQ--YLRVGKAVTP 205 (216)
T ss_dssp HHHHHHHHTTCB-CSSS--BCEEEECSSC
T ss_pred HHHHHHHccCCE-eCCc--EEEEEEecCC
Confidence 999999999987 7777 5788888654
No 21
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=1.4e-30 Score=222.79 Aligned_cols=166 Identities=19% Similarity=0.298 Sum_probs=139.6
Q ss_pred ccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEE
Q 013926 98 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 177 (434)
Q Consensus 98 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v 177 (434)
....++|||+|||.++++++|+++|+.||.+..+.+....++.++|||||+|.+.++|.+|+ .+++.. +.|+ .|.|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g~--~l~v 85 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLK-VFGN--EIKL 85 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEE-ETTE--EEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCE-eCCe--EEEE
Confidence 34468999999999999999999999999776633333346778999999999999999999 599976 6666 6788
Q ss_pred eeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCC
Q 013926 178 KWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 257 (434)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 257 (434)
.++.....
T Consensus 86 ~~~~~~~~------------------------------------------------------------------------ 93 (175)
T 1fje_B 86 EKPKGRDS------------------------------------------------------------------------ 93 (175)
T ss_dssp ECCCCSSC------------------------------------------------------------------------
T ss_pred ecCCCccc------------------------------------------------------------------------
Confidence 87744210
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 258 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 337 (434)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (434)
T Consensus 94 -------------------------------------------------------------------------------- 93 (175)
T 1fje_B 94 -------------------------------------------------------------------------------- 93 (175)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 013926 338 GSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 417 (434)
Q Consensus 338 ~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g 417 (434)
......++|||+|||.++|+++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|++.|||..|+|
T Consensus 94 -----~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (175)
T 1fje_B 94 -----KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 163 (175)
T ss_dssp -----STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETT
T ss_pred -----cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 001145789999999999999999999999998776 4588999999999999999999999999999999
Q ss_pred eEEEEEEecCCc
Q 013926 418 KKLKVQLKRDNK 429 (434)
Q Consensus 418 ~~i~v~~a~~~~ 429 (434)
++|+|++|+.++
T Consensus 164 ~~i~v~~a~~k~ 175 (175)
T 1fje_B 164 RSVSLYYTGEKG 175 (175)
T ss_dssp EEEEEEECSSCC
T ss_pred eEEEEEecCCCC
Confidence 999999998763
No 22
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=2.1e-29 Score=213.75 Aligned_cols=163 Identities=25% Similarity=0.387 Sum_probs=141.2
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
.++++|||+|||+++|+++|+++|+.||.|.+|.++.++.++.++ ||||+|.+.++|++|++. + ..+.| +.+.+
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~-~~~~g--~~i~v 75 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--Q-HILDG--KVIDP 75 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--C-CEETT--EECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--c-cccCC--eEccc
Confidence 367999999999999999999999999999999999998888888 999999999999999996 2 23556 55666
Q ss_pred eccCcccc-cCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccC
Q 013926 91 KYADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKM 168 (434)
Q Consensus 91 ~~~~~~~~-~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~ 168 (434)
.++..... ....+|||+|||.++++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|++ +++.. +
T Consensus 76 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~-~ 153 (167)
T 2cjk_A 76 KRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFID-F 153 (167)
T ss_dssp EECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEEC-S
T ss_pred ccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEE-e
Confidence 65544332 336789999999999999999999999999999999886 78899999999999999999998 77755 7
Q ss_pred CCCcceEEEeeccCh
Q 013926 169 EGSSVPLVVKWADTE 183 (434)
Q Consensus 169 ~g~~~~i~v~~a~~~ 183 (434)
+|+ .|.|.||.++
T Consensus 154 ~g~--~i~V~~a~pk 166 (167)
T 2cjk_A 154 KDR--KIEIKRAEPR 166 (167)
T ss_dssp SSS--CEEEEECCCC
T ss_pred CCe--EEEEeecCCC
Confidence 777 6889988764
No 23
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=4.3e-28 Score=211.41 Aligned_cols=194 Identities=18% Similarity=0.312 Sum_probs=138.7
Q ss_pred CCeEEEeCCC-CCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEee
Q 013926 101 EHKLFIGMLP-KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 179 (434)
Q Consensus 101 ~~~v~v~nlp-~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~ 179 (434)
..+|||+||| ..+++++|+++|+.||.|..|.++++ .+|+|||+|.+.++|++|++.|||.. +.|+ .|.|.+
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~-~~g~--~l~v~~ 76 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNF-MFGQ--KMNVCV 76 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEEE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCE-ECCc--eEEEEE
Confidence 4789999999 89999999999999999999999876 37899999999999999999999987 6666 578888
Q ss_pred ccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCC
Q 013926 180 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 259 (434)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 259 (434)
+..... .+. ..... ..+......+.
T Consensus 77 s~~~~~---------------~p~--------------------~~~~~-~~~~~~~~~~~------------------- 101 (205)
T 3tyt_A 77 SKQPAI---------------MPG--------------------QSYGL-EDGSCSYKDFS------------------- 101 (205)
T ss_dssp CSCSCC---------------CCC--------------------SCCBC-TTSCBSEEECT-------------------
T ss_pred ccCCcc---------------CCC--------------------ccccc-ccCCccccccC-------------------
Confidence 743210 000 00000 00000000000
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 260 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 339 (434)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (434)
+.....+.. . .. .
T Consensus 102 ----------------------------~~~~~r~~~--------------------------~-------~~------~ 114 (205)
T 3tyt_A 102 ----------------------------ESRNNRFST--------------------------P-------EQ------A 114 (205)
T ss_dssp ----------------------------TCTTCSCSS--------------------------H-------HH------H
T ss_pred ----------------------------CCccccccC--------------------------c-------cc------c
Confidence 000000000 0 00 0
Q ss_pred CCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCe--EEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 013926 340 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRV--LSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 417 (434)
Q Consensus 340 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v--~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g 417 (434)
......+++++|||+|||.++|+++|+++|+.||.| .+++++.++ +.++|+|||+|.+.++|.+|+..|||..|.|
T Consensus 115 ~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g 192 (205)
T 3tyt_A 115 AKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKN 192 (205)
T ss_dssp TTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECC
T ss_pred cccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccC
Confidence 000012356789999999999999999999999999 899998774 5667999999999999999999999999999
Q ss_pred e----EEEEEEe
Q 013926 418 K----KLKVQLK 425 (434)
Q Consensus 418 ~----~i~v~~a 425 (434)
+ ++.|+||
T Consensus 193 ~~~~~p~~vk~~ 204 (205)
T 3tyt_A 193 PNGPYPYTLKLC 204 (205)
T ss_dssp SSSSSCEECEEE
T ss_pred CCCCcceEEEec
Confidence 6 5777665
No 24
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=8.3e-28 Score=218.73 Aligned_cols=157 Identities=27% Similarity=0.478 Sum_probs=140.8
Q ss_pred CCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEee
Q 013926 100 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 179 (434)
Q Consensus 100 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~ 179 (434)
..++|||+|||.++|+++|+++|+.||.|..|.+.++ +|+|||+|.+.++|.+|+..+++.. +.|+ .|.|.+
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~-i~g~--~l~v~~ 92 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTI-LKSR--PLRIRF 92 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCE-ETTE--ECEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcE-ECCc--eeEeee
Confidence 3578999999999999999999999999999999755 7899999999999999999999976 6776 577777
Q ss_pred ccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCC
Q 013926 180 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 259 (434)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 259 (434)
+.
T Consensus 93 a~------------------------------------------------------------------------------ 94 (261)
T 3sde_A 93 AT------------------------------------------------------------------------------ 94 (261)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 62
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 260 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 339 (434)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (434)
T Consensus 95 -------------------------------------------------------------------------------- 94 (261)
T 3sde_A 95 -------------------------------------------------------------------------------- 94 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHh-CCceeC--
Q 013926 340 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM-NGCQLG-- 416 (434)
Q Consensus 340 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l-~g~~l~-- 416 (434)
+.++|||+|||..+|+++|+++|+.||.|.+|+|+.+ .+|+++|||||+|.+.++|.+|+..| ++..+.
T Consensus 95 -------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 166 (261)
T 3sde_A 95 -------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTT 166 (261)
T ss_dssp -------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSS
T ss_pred -------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecC
Confidence 2257999999999999999999999999999999999 58999999999999999999999999 555655
Q ss_pred -CeEEEEEEecCCcC
Q 013926 417 -GKKLKVQLKRDNKQ 430 (434)
Q Consensus 417 -g~~i~v~~a~~~~~ 430 (434)
|++|.|.+++....
T Consensus 167 ~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 167 TPRPVIVEPMEQFDD 181 (261)
T ss_dssp SCCBCEEEECCCEES
T ss_pred CCceEEEeeccccCc
Confidence 99999999987653
No 25
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=2.1e-27 Score=211.80 Aligned_cols=194 Identities=22% Similarity=0.353 Sum_probs=142.5
Q ss_pred cCCCeEEEeCCCC-CCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEE
Q 013926 99 RLEHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 177 (434)
Q Consensus 99 ~~~~~v~v~nlp~-~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v 177 (434)
...++|||+|||. ++++++|+++|+.||.|..|.+..+. +|+|||+|.+.++|.+|++.|++.. +.|+ .|.|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~-~~g~--~l~v 104 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHK-LHGK--PIRI 104 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCB-CSSS--BCEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCe-ECCe--EEEE
Confidence 3468999999999 99999999999999999999999875 6899999999999999999999976 6776 5788
Q ss_pred eeccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCC
Q 013926 178 KWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 257 (434)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 257 (434)
.++....... +...... ......+
T Consensus 105 ~~a~~~~~~~--------------~~~~~~~------------------------~~~~~~~------------------ 128 (229)
T 2adc_A 105 TLSKHQNVQL--------------PREGQED------------------------QGLTKDY------------------ 128 (229)
T ss_dssp ECCSCCCCCC--------------CCSSSST------------------------TTTEEEC------------------
T ss_pred EEecCccccC--------------ccccccc------------------------ccccccc------------------
Confidence 8775431000 0000000 0000000
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 258 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 337 (434)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (434)
. ....... . .+.
T Consensus 129 ----------------------~-------~~~~~~~-----~---------------------------------~~~- 140 (229)
T 2adc_A 129 ----------------------G-------NSPLHRF-----K---------------------------------KPG- 140 (229)
T ss_dssp ----------------------T-------TCSSCCC-----C---------------------------------STT-
T ss_pred ----------------------c-------cCccccc-----C---------------------------------Ccc-
Confidence 0 0000000 0 000
Q ss_pred CCCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC
Q 013926 338 GSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 416 (434)
Q Consensus 338 ~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~ 416 (434)
........+++++|||+|||.++++++|+++|+.|| .|.+++++.+ .+|||||+|.+.++|.+|++.|||..++
T Consensus 141 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 141 SKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp SGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred ccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccC
Confidence 000001123568999999999999999999999999 9999999653 3679999999999999999999999999
Q ss_pred -CeEEEEEEecCC
Q 013926 417 -GKKLKVQLKRDN 428 (434)
Q Consensus 417 -g~~i~v~~a~~~ 428 (434)
|++|+|.||+++
T Consensus 216 ~g~~l~v~~a~~~ 228 (229)
T 2adc_A 216 ENHHLRVSFSKST 228 (229)
T ss_dssp SSCBCEEEECSSC
T ss_pred CCCeEEEEEecCC
Confidence 999999999864
No 26
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=1.1e-27 Score=208.99 Aligned_cols=192 Identities=22% Similarity=0.370 Sum_probs=141.5
Q ss_pred CCeEEEeCCCC-CCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEee
Q 013926 101 EHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 179 (434)
Q Consensus 101 ~~~v~v~nlp~-~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~ 179 (434)
.++|||+|||. ++++++|+++|+.||.|..|.+..+. +|+|||+|.+.++|.+|++.|++.. ++|+ .|.|.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~-~~g~--~l~v~~ 75 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHK-LHGK--PIRITL 75 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCC-CSSC--CCEEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCe-ecCe--EEEEEE
Confidence 47899999999 99999999999999999999998875 6799999999999999999999977 6776 578887
Q ss_pred ccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCCC
Q 013926 180 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 259 (434)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 259 (434)
+...... .+..... .......+.
T Consensus 76 a~~~~~~--------------~~~~~~~------------------------~~~~~~~~~------------------- 98 (198)
T 1qm9_A 76 SKHQNVQ--------------LPREGQE------------------------DQGLTKDYG------------------- 98 (198)
T ss_dssp CCCCSCC--------------CSSSSSS------------------------SSSCEEESS-------------------
T ss_pred ecCCCcC--------------CCCcCCc------------------------ccccccccc-------------------
Confidence 7543100 0000000 000000000
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 260 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 339 (434)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (434)
......+.. +. ..
T Consensus 99 ----------------------------~~~~~r~~~--------------------------------------~~-~~ 111 (198)
T 1qm9_A 99 ----------------------------NSPLHRFKK--------------------------------------PG-SK 111 (198)
T ss_dssp ----------------------------CCCTTSSSS--------------------------------------CC-CC
T ss_pred ----------------------------CCchhhccC--------------------------------------cc-cc
Confidence 000000000 00 00
Q ss_pred CCCccCCCCceEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC-C
Q 013926 340 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG-G 417 (434)
Q Consensus 340 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~-g 417 (434)
......+++++|||+|||.++++++|+++|+.|| .|.+++++.+. +|+|||+|.+.++|.+|+..|||..++ |
T Consensus 112 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g 186 (198)
T 1qm9_A 112 NFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGEN 186 (198)
T ss_dssp CCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSC
T ss_pred ccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 0001123568999999999999999999999999 99999996642 689999999999999999999999999 9
Q ss_pred eEEEEEEecCC
Q 013926 418 KKLKVQLKRDN 428 (434)
Q Consensus 418 ~~i~v~~a~~~ 428 (434)
++|+|.|++++
T Consensus 187 ~~l~v~~a~~~ 197 (198)
T 1qm9_A 187 HHLRVSFSKST 197 (198)
T ss_dssp CSCCEEEECCC
T ss_pred CeEEEEeeccc
Confidence 99999999864
No 27
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=1e-27 Score=204.38 Aligned_cols=157 Identities=28% Similarity=0.457 Sum_probs=136.8
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhcc----C-------ceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCcc
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEF----A-------LVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKT 80 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~ 80 (434)
.++++|||+|||+++|+++|+++|+.| | .|.++.+..++. ||||+|.+.++|++|+ .+|+..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g-----~afV~f~~~~~A~~A~-~~~~~~- 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKN-----FAFLEFRSVDETTQAM-AFDGII- 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTT-----EEEEEESSHHHHHHHG-GGTTCE-
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCC-----EEEEEeCCHHHHHHHH-HhCCcE-
Confidence 467999999999999999999999999 6 778877765533 9999999999999999 888876
Q ss_pred CCCCCCceeeeccCcccc-cCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHH
Q 013926 81 LPGASSPLQVKYADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAA 158 (434)
Q Consensus 81 ~~g~~~~i~~~~~~~~~~-~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a 158 (434)
+.| +.+.+.++..... ...++|||+|||.++++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|
T Consensus 75 ~~g--~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 152 (172)
T 2g4b_A 75 FQG--QSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 152 (172)
T ss_dssp ETT--EECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHH
T ss_pred ecC--ceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 566 6777777654432 336899999999999999999999999999999999986 888999999999999999999
Q ss_pred HHHhcCCccCCCCcceEEEeec
Q 013926 159 LEAINGKHKMEGSSVPLVVKWA 180 (434)
Q Consensus 159 ~~~l~~~~~~~g~~~~i~v~~a 180 (434)
++.|++.. ++|+ .|.|.||
T Consensus 153 ~~~l~g~~-~~g~--~l~V~~A 171 (172)
T 2g4b_A 153 IAGLNGMQ-LGDK--KLLVQRA 171 (172)
T ss_dssp HHHHTTCE-ETTE--ECEEEEC
T ss_pred HHHcCCCE-ECCe--EEEEEeC
Confidence 99999977 6776 5788876
No 28
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=2.4e-27 Score=218.86 Aligned_cols=175 Identities=22% Similarity=0.255 Sum_probs=154.7
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
...++|||+|||+++|+++|+++|+.||.|..+.++.++.++.++ ||||+|.+.++|.+|++.+|+.. +.| +.+.+
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~-~~g--~~i~v 169 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKP-LGP--RTLYV 169 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCE-eCC--cEEEE
Confidence 456899999999999999999999999999999999999888888 99999999999999999999875 566 78888
Q ss_pred eccCcccc----cCCCeEEEeCCCCCC-cHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCC
Q 013926 91 KYADGELE----RLEHKLFIGMLPKNV-SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 165 (434)
Q Consensus 91 ~~~~~~~~----~~~~~v~v~nlp~~~-~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~ 165 (434)
.++..... ...++|||+|||.++ ++++|+++|+.||.|..+.+..+.+|.++|+|||+|.+.++|.+|++.|+|.
T Consensus 170 ~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 249 (284)
T 3smz_A 170 HWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGL 249 (284)
T ss_dssp EECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred EECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 87765543 236789999999995 9999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCcceEEEeeccChHHHHHHHHH
Q 013926 166 HKMEGSSVPLVVKWADTEKERQARRAQ 192 (434)
Q Consensus 166 ~~~~g~~~~i~v~~a~~~~~~~~~~~~ 192 (434)
. ++|+ .|.|.|+.+...+.....+
T Consensus 250 ~-~~g~--~l~v~~a~~~~~~~~~~~~ 273 (284)
T 3smz_A 250 S-LGGS--HLRVSFCAPGPPGRSMLAA 273 (284)
T ss_dssp E-ETTE--ECEEEECCSSSCHHHHHHH
T ss_pred c-cCCe--EEEEEEecCCCcccchhhh
Confidence 7 6777 6889999887665444433
No 29
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=1.4e-27 Score=208.09 Aligned_cols=160 Identities=18% Similarity=0.292 Sum_probs=133.7
Q ss_pred cCCceEEEcCCC-CCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 12 EERVKLFVGQVP-KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 12 ~~~~~l~v~nLp-~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
.++++|||+||| +.+|+++|+++|+.||.|.+|++++++ .+||||+|.+.++|++||+.||+.. +.| +.|+|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~Ai~~lng~~-~~g--~~l~v 74 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK----PGAAMVEMADGYAVDRAITHLNNNF-MFG--QKMNV 74 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS----TTCEEEEESSHHHHHHHHHHHTTCE-ETT--EECEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC----CCEEEEEECCHHHHHHHHHHhCCCE-ECC--ceEEE
Confidence 467899999999 899999999999999999999998753 1399999999999999999999976 555 56666
Q ss_pred eccCccc--------------------------------------ccCCCeEEEeCCCCCCcHHHHHHhhhccCCe--eE
Q 013926 91 KYADGEL--------------------------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTI--KD 130 (434)
Q Consensus 91 ~~~~~~~--------------------------------------~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i--~~ 130 (434)
.++.... ....++|||+|||+++++++|+++|+.||.| ..
T Consensus 75 ~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~ 154 (205)
T 3tyt_A 75 CVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTS 154 (205)
T ss_dssp EECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSE
T ss_pred EEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEE
Confidence 6543110 0113579999999999999999999999998 88
Q ss_pred EEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCC--cceEEEeec
Q 013926 131 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS--SVPLVVKWA 180 (434)
Q Consensus 131 i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~--~~~i~v~~a 180 (434)
+.++.+. +.++|+|||+|.+.++|.+|+..||+.. ++|. ..++.|++|
T Consensus 155 v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~-~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 155 VKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQ-MKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCE-ECCSSSSSCEECEEE
T ss_pred EEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCC-ccCCCCCcceEEEec
Confidence 9998876 4557999999999999999999999987 5444 456787776
No 30
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=1.2e-27 Score=221.77 Aligned_cols=160 Identities=18% Similarity=0.309 Sum_probs=136.1
Q ss_pred cCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEe
Q 013926 99 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 178 (434)
Q Consensus 99 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~ 178 (434)
...++|||+|||.++++++|+++|+.||.|..|.+..+..+ ++|+|||+|.+.++|.+|++ +++.. ++|+ .|.+.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~-~~~~~-~~g~--~i~v~ 113 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAIT-KTHKV-VGQN--EIIVS 113 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHT-TTTCE-ETTE--ECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHH-hCCcE-eCCc--EEEEE
Confidence 34689999999999999999999999999999999998766 47999999999999999995 88865 7776 46666
Q ss_pred eccChHHHHHHHHHHHhhhccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCcCcccCCCCCCCCCCCCcCCCCCCC
Q 013926 179 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 258 (434)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 258 (434)
++
T Consensus 114 ~~------------------------------------------------------------------------------ 115 (292)
T 2ghp_A 114 HL------------------------------------------------------------------------------ 115 (292)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred EC------------------------------------------------------------------------------
Confidence 54
Q ss_pred CCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013926 259 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 338 (434)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (434)
T Consensus 116 -------------------------------------------------------------------------------- 115 (292)
T 2ghp_A 116 -------------------------------------------------------------------------------- 115 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccCCCCceEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 013926 339 SGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 417 (434)
Q Consensus 339 ~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g 417 (434)
..++|||+|||.++++++|+++|+.|| .|.+++++.++ .|.++|||||+|.+.++|.+|++.|||..+.|
T Consensus 116 --------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 186 (292)
T 2ghp_A 116 --------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEG 186 (292)
T ss_dssp --------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred --------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 236899999999999999999999999 99999999886 48899999999999999999999999999999
Q ss_pred eEEEEEEecCCcC
Q 013926 418 KKLKVQLKRDNKQ 430 (434)
Q Consensus 418 ~~i~v~~a~~~~~ 430 (434)
+.|+|.++..+..
T Consensus 187 ~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 187 YTLVTKVSNPLEK 199 (292)
T ss_dssp EECEEEECCCC--
T ss_pred cEEEEEECCCCcc
Confidence 9999999986653
No 31
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=4.3e-27 Score=213.96 Aligned_cols=163 Identities=25% Similarity=0.404 Sum_probs=142.7
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
+....+.++|||+|||+++|+++|+++|+.||.|.+|.+.+++. ||||+|.+.++|.+|++.+|+.. +.| +.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg-----~afV~f~~~~~A~~A~~~l~g~~-i~g--~~ 87 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRG-----FGFIRLESRTLAEIAKAELDGTI-LKS--RP 87 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTT-----EEEEECSSHHHHHHHHHHHTTCE-ETT--EE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCc-----EEEEEECCHHHHHHHHHHcCCcE-ECC--ce
Confidence 44556778999999999999999999999999999999976543 99999999999999999998876 556 77
Q ss_pred eeeeccCcccccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHh-cCCc
Q 013926 88 LQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI-NGKH 166 (434)
Q Consensus 88 i~~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l-~~~~ 166 (434)
+.+.++.. ..+|||+|||..+++++|+++|+.||.|..|.++.+.+|.++|+|||+|.+.++|.+|+..| ++..
T Consensus 88 l~v~~a~~-----~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 162 (261)
T 3sde_A 88 LRIRFATH-----GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAF 162 (261)
T ss_dssp CEEEECCC-----SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred eEeeeccc-----CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeE
Confidence 88877763 46899999999999999999999999999999999989999999999999999999999999 4544
Q ss_pred cCCCCcceEEEeeccCh
Q 013926 167 KMEGSSVPLVVKWADTE 183 (434)
Q Consensus 167 ~~~g~~~~i~v~~a~~~ 183 (434)
++.+...+|.|.++...
T Consensus 163 ~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 163 LLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp ESSSSCCBCEEEECCCE
T ss_pred EecCCCceEEEeecccc
Confidence 44455557899888654
No 32
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=6.5e-28 Score=206.16 Aligned_cols=164 Identities=21% Similarity=0.331 Sum_probs=137.2
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
..+..+.++|||+|||+++|+++|+++|..||.+.. .++.+..++.++ ||||+|.+.++|++|+ .+|+.. +.| +
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g--~ 81 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLK-VFG--N 81 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEE-ETT--E
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCE-eCC--e
Confidence 356788999999999999999999999999998766 333444455666 9999999999999999 488876 556 7
Q ss_pred ceeeeccCcccc---cCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 013926 87 PLQVKYADGELE---RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 163 (434)
Q Consensus 87 ~i~~~~~~~~~~---~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~ 163 (434)
.+.+.++..... ...++|||+|||.++++++|+++|+.||.|..+ ..++.++|+|||+|.+.++|.+|++.|+
T Consensus 82 ~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 1fje_B 82 EIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQ 157 (175)
T ss_dssp EEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred EEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 788877764332 346899999999999999999999999988765 5577889999999999999999999999
Q ss_pred CCccCCCCcceEEEeeccCh
Q 013926 164 GKHKMEGSSVPLVVKWADTE 183 (434)
Q Consensus 164 ~~~~~~g~~~~i~v~~a~~~ 183 (434)
+.. ++|+ .|.|.|+.++
T Consensus 158 g~~-~~g~--~i~v~~a~~k 174 (175)
T 1fje_B 158 GAE-IDGR--SVSLYYTGEK 174 (175)
T ss_dssp EEE-ETTE--EEEEEECSSC
T ss_pred CCE-ECCe--EEEEEecCCC
Confidence 976 7776 6889888653
No 33
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=9.2e-27 Score=203.14 Aligned_cols=160 Identities=28% Similarity=0.451 Sum_probs=135.3
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhcc----C-------ceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCcc
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEF----A-------LVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKT 80 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~ 80 (434)
..+++|||+|||+++|+++|+++|+.| | .|.++.+..++. ||||+|.+.++|++|+ .+|+..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g-----~afV~F~~~~~A~~Al-~l~g~~- 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKN-----FAFLEFRSVDETTQAM-AFDGII- 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTT-----EEEEEESCSHHHHHHG-GGTTEE-
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCC-----EEEEEeCCHHHHHHHH-HhcCCE-
Confidence 357999999999999999999999999 5 666666644322 9999999999999999 888865
Q ss_pred CCCCCCceeeeccCccc---------------------ccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-C
Q 013926 81 LPGASSPLQVKYADGEL---------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-Q 138 (434)
Q Consensus 81 ~~g~~~~i~~~~~~~~~---------------------~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~ 138 (434)
+.| +.+.+.++.... ....++|||+|||..+++++|+++|+.||.|..+.+..+. +
T Consensus 75 ~~g--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~ 152 (198)
T 2yh0_A 75 FQG--QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT 152 (198)
T ss_dssp ETT--EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTT
T ss_pred EcC--ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCC
Confidence 566 677777665331 1235899999999999999999999999999999999886 8
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeeccCh
Q 013926 139 QTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 183 (434)
Q Consensus 139 ~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~~~ 183 (434)
+.++|+|||+|.+.++|.+|++.|++.. ++|+ .|.|.++.++
T Consensus 153 ~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~v~~a~~~ 194 (198)
T 2yh0_A 153 GLSKGYAFCEYVDINVTDQAIAGLNGMQ-LGDK--KLLVQRASVG 194 (198)
T ss_dssp CSEEEEEEEEESSSSHHHHHHHHHTTCE-ETTE--ECEEEESCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCE-ECCE--EEEEEECCCC
Confidence 8899999999999999999999999977 6777 6788888654
No 34
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=5.5e-26 Score=202.61 Aligned_cols=161 Identities=20% Similarity=0.354 Sum_probs=136.6
Q ss_pred ccCccCCceEEEcCCCC-CCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 8 KKSSEERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~-~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
.....++++|||+|||+ ++++++|+++|+.||.|.+|.++.++ .+||||+|.+.++|++|++.+|+.. +.| +
T Consensus 28 ~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~-~~g--~ 100 (229)
T 2adc_A 28 GLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHK-LHG--K 100 (229)
T ss_dssp GGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCB-CSS--S
T ss_pred CCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCe-ECC--e
Confidence 34456789999999999 99999999999999999999999876 2299999999999999999999876 566 6
Q ss_pred ceeeeccCccc------------------------------------ccCCCeEEEeCCCCCCcHHHHHHhhhccC-Cee
Q 013926 87 PLQVKYADGEL------------------------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYG-TIK 129 (434)
Q Consensus 87 ~i~~~~~~~~~------------------------------------~~~~~~v~v~nlp~~~~~~~l~~~f~~~G-~i~ 129 (434)
.+.+.++.... ....++|||+|||..+++++|+++|+.|| .|.
T Consensus 101 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~ 180 (229)
T 2adc_A 101 PIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK 180 (229)
T ss_dssp BCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEE
T ss_pred EEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCee
Confidence 67666554220 01257899999999999999999999999 999
Q ss_pred EEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCC-CCcceEEEeeccC
Q 013926 130 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME-GSSVPLVVKWADT 182 (434)
Q Consensus 130 ~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~-g~~~~i~v~~a~~ 182 (434)
.|.+..+ .+|+|||+|.+.++|.+|++.|++.. ++ |+ .|.|.|+.+
T Consensus 181 ~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~-~~~g~--~l~v~~a~~ 227 (229)
T 2adc_A 181 GFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHD-LGENH--HLRVSFSKS 227 (229)
T ss_dssp EEEECSS----STTCEEEEESSHHHHHHHHHHHTTCB-SSSSC--BCEEEECSS
T ss_pred EEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCc-cCCCC--eEEEEEecC
Confidence 9999653 26899999999999999999999987 55 66 578888865
No 35
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=4.6e-26 Score=210.03 Aligned_cols=161 Identities=20% Similarity=0.421 Sum_probs=136.0
Q ss_pred cCccCCceEEEcCCCCCCCHHHHH----HHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLL----AMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~----~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
.+..++++|||+|||+++|+++|+ ++|+.||.|.+|.+.+ ++.++ ||||+|.+.++|++|++.||+.. +.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g 79 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFP-FYD 79 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCe-eCC
Confidence 356779999999999999999977 8999999999999876 45566 99999999999999999999875 566
Q ss_pred CCCceeeeccCcccc-----------------------------------------------------------------
Q 013926 84 ASSPLQVKYADGELE----------------------------------------------------------------- 98 (434)
Q Consensus 84 ~~~~i~~~~~~~~~~----------------------------------------------------------------- 98 (434)
+.|+|.++.....
T Consensus 80 --~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (282)
T 3pgw_A 80 --KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHM 157 (282)
T ss_pred --cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccC
Confidence 6666665543221
Q ss_pred -----------------------------------------------cCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEE
Q 013926 99 -----------------------------------------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 131 (434)
Q Consensus 99 -----------------------------------------------~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i 131 (434)
...++|||+|||.++++++|+++|+.||.|..|
T Consensus 158 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v 237 (282)
T 3pgw_A 158 PGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEV 237 (282)
T ss_pred CCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEE
Confidence 124679999999999999999999999999999
Q ss_pred EEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeecc
Q 013926 132 QILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 181 (434)
Q Consensus 132 ~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~ 181 (434)
.+..+. +|+|||+|.+.++|.+|++.||+..+.+|+ .|.|.|+.
T Consensus 238 ~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~--~l~v~~ak 281 (282)
T 3pgw_A 238 RLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNN--AMKISFAK 281 (282)
T ss_pred EEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCC--EEEEEEec
Confidence 998653 589999999999999999999998743366 68888874
No 36
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=6e-26 Score=197.96 Aligned_cols=156 Identities=21% Similarity=0.369 Sum_probs=132.6
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCceeee
Q 013926 13 ERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 91 (434)
Q Consensus 13 ~~~~l~v~nLp~-~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~ 91 (434)
.+++|||+|||+ ++++++|+++|+.||.|.+|.++.++ .+||||+|.+.++|++|++.+|+.. +.| +.+.+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~-~~g--~~l~v~ 74 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHK-LHG--KPIRIT 74 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCC-CSS--CCCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCe-ecC--eEEEEE
Confidence 368999999999 99999999999999999999998875 2299999999999999999999876 566 666665
Q ss_pred ccCccc------------------------------------ccCCCeEEEeCCCCCCcHHHHHHhhhccC-CeeEEEEc
Q 013926 92 YADGEL------------------------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQIL 134 (434)
Q Consensus 92 ~~~~~~------------------------------------~~~~~~v~v~nlp~~~~~~~l~~~f~~~G-~i~~i~~~ 134 (434)
++.... ....++|||+|||..+++++|+++|+.|| .|..+.+.
T Consensus 75 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~ 154 (198)
T 1qm9_A 75 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 154 (198)
T ss_dssp ECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEES
T ss_pred EecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEE
Confidence 554221 01267899999999999999999999999 99999997
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCC-CCcceEEEeeccC
Q 013926 135 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKME-GSSVPLVVKWADT 182 (434)
Q Consensus 135 ~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~-g~~~~i~v~~a~~ 182 (434)
.+. +|+|||+|.+.++|.+|++.|++.. ++ |+ .|.|.|+.+
T Consensus 155 ~~~----~g~afV~f~~~~~A~~A~~~l~g~~-~~~g~--~l~v~~a~~ 196 (198)
T 1qm9_A 155 QKD----RKMALIQMGSVEEAVQALIDLHNHD-LGENH--HLRVSFSKS 196 (198)
T ss_dssp STT----SSCEEEECSSHHHHHHHHHHHTSSC-CSSCC--SCCEEEECC
T ss_pred eCC----CcEEEEEeCCHHHHHHHHHHhcCCc-cCCCC--eEEEEeecc
Confidence 642 7899999999999999999999987 55 66 577777754
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=3.7e-23 Score=173.28 Aligned_cols=86 Identities=26% Similarity=0.422 Sum_probs=81.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|||+|||.++|+++|+++|+.||.|.+++|+.++.+|+++|||||+|.+.++|.+|++.|||..|+|++|+|.+|+
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCcCCC
Q 013926 427 DNKQNK 432 (434)
Q Consensus 427 ~~~~~~ 432 (434)
.+....
T Consensus 149 ~~~~~~ 154 (158)
T 2kn4_A 149 YGRPPD 154 (158)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 886554
No 38
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=154.92 Aligned_cols=82 Identities=38% Similarity=0.589 Sum_probs=78.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
..+++|||+|||.++|+++|+++|+.||.|.+++|++++.+|+++|||||+|.+.++|++|++.|||..|+|++|+|.+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 013926 426 RD 427 (434)
Q Consensus 426 ~~ 427 (434)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 74
No 39
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=151.19 Aligned_cols=84 Identities=13% Similarity=0.198 Sum_probs=80.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
++.++|||+|||+++++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|++|++.|||..|.|+.|+|.+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 013926 426 RDNK 429 (434)
Q Consensus 426 ~~~~ 429 (434)
+.+.
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7664
No 40
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=6e-21 Score=150.60 Aligned_cols=90 Identities=67% Similarity=1.084 Sum_probs=84.5
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 344 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 344 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
..+..++|||+|||.++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34466899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCcCCCC
Q 013926 424 LKRDNKQNKP 433 (434)
Q Consensus 424 ~a~~~~~~~~ 433 (434)
+++.+...+|
T Consensus 101 ~a~~~~~~~~ 110 (115)
T 2cpz_A 101 LKRSKNDSKS 110 (115)
T ss_dssp CCCCSCCCCC
T ss_pred EcCCCCcCCC
Confidence 9998887654
No 41
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=5.2e-22 Score=149.26 Aligned_cols=83 Identities=16% Similarity=0.336 Sum_probs=77.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEEec
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM-NGCQLGGKKLKVQLKR 426 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l-~g~~l~g~~i~v~~a~ 426 (434)
.+|||+|||.++|+++|+++|+.|| .|.+|+|++++.+|.++|||||+|.+.++|++|++.+ |+..++|++|+|.+|+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 8999999999999999999999999999999999987 4678999999999998
Q ss_pred CCcCC
Q 013926 427 DNKQN 431 (434)
Q Consensus 427 ~~~~~ 431 (434)
+++..
T Consensus 82 ~~~~~ 86 (91)
T 2lxi_A 82 PKPKI 86 (91)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87643
No 42
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.2e-21 Score=146.70 Aligned_cols=90 Identities=24% Similarity=0.404 Sum_probs=84.9
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 344 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 344 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
...+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCcCCCC
Q 013926 424 LKRDNKQNKP 433 (434)
Q Consensus 424 ~a~~~~~~~~ 433 (434)
+++.+....|
T Consensus 91 ~a~~~~~~~~ 100 (103)
T 2cq0_A 91 WAKPSTNSGP 100 (103)
T ss_dssp ESSCCCCSCC
T ss_pred ECCCCCCCCC
Confidence 9999887665
No 43
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=8.4e-21 Score=141.87 Aligned_cols=83 Identities=34% Similarity=0.548 Sum_probs=77.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
+.++|||+|||.++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|++|++.|||..++|++|+|.+|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 56899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCc
Q 013926 427 DNK 429 (434)
Q Consensus 427 ~~~ 429 (434)
.++
T Consensus 85 ~kp 87 (87)
T 3bs9_A 85 RKP 87 (87)
T ss_dssp ---
T ss_pred CCC
Confidence 764
No 44
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=1.1e-20 Score=139.77 Aligned_cols=81 Identities=37% Similarity=0.574 Sum_probs=78.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 428 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~~ 428 (434)
++|||+|||.++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|++|++.|||..++|++|+|.+|+.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999889999999999999999999999999999999999999999987
Q ss_pred c
Q 013926 429 K 429 (434)
Q Consensus 429 ~ 429 (434)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 45
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=147.49 Aligned_cols=80 Identities=18% Similarity=0.330 Sum_probs=75.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCC--eEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCc----eeCCeEEE
Q 013926 348 GANLFIYHIPQEFGDQELGNAFQAFGR--VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC----QLGGKKLK 421 (434)
Q Consensus 348 ~~~v~V~nLp~~~t~~~L~~~F~~fG~--v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~----~l~g~~i~ 421 (434)
-.||||+|||+++|+++|+++|+.||. |.+|+|++++.+|+++|||||+|.+.++|++|++.|||. .|+||+|+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 368999999999999999999999995 679999999999999999999999999999999999996 59999999
Q ss_pred EEEecC
Q 013926 422 VQLKRD 427 (434)
Q Consensus 422 v~~a~~ 427 (434)
|+||++
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999986
No 46
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.4e-20 Score=143.20 Aligned_cols=86 Identities=23% Similarity=0.414 Sum_probs=81.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
....++|||+|||.++|+++|+++|+.||.|.+++|+.++ +|+++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4467899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ecCCcCC
Q 013926 425 KRDNKQN 431 (434)
Q Consensus 425 a~~~~~~ 431 (434)
|+.++..
T Consensus 93 a~~~~~~ 99 (100)
T 2do4_A 93 SNSGPSS 99 (100)
T ss_dssp CCCCSCC
T ss_pred CCCCCCC
Confidence 9988754
No 47
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=2.5e-20 Score=147.10 Aligned_cols=88 Identities=32% Similarity=0.530 Sum_probs=82.8
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 344 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 344 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
.....++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|++|++.|||..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCcCC
Q 013926 424 LKRDNKQN 431 (434)
Q Consensus 424 ~a~~~~~~ 431 (434)
+|+.+...
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99987654
No 48
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=142.52 Aligned_cols=84 Identities=21% Similarity=0.420 Sum_probs=79.9
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 344 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 344 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
..++.++|||+|||.++++++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EecC
Q 013926 424 LKRD 427 (434)
Q Consensus 424 ~a~~ 427 (434)
+|++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9986
No 49
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=142.41 Aligned_cols=82 Identities=26% Similarity=0.457 Sum_probs=78.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
.++.++|||+|||.++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 44678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ec
Q 013926 425 KR 426 (434)
Q Consensus 425 a~ 426 (434)
||
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 50
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=2.6e-20 Score=144.40 Aligned_cols=88 Identities=27% Similarity=0.419 Sum_probs=83.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC---eEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG---KKLK 421 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g---~~i~ 421 (434)
.+..++|||+|||.++++++|+++|+.||.|.+|+|+.++ +|+++|||||+|.+.++|++|++.|||..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3467899999999999999999999999999999999997 89999999999999999999999999999998 9999
Q ss_pred EEEecCCcCCCC
Q 013926 422 VQLKRDNKQNKP 433 (434)
Q Consensus 422 v~~a~~~~~~~~ 433 (434)
|.+|+.++...|
T Consensus 91 V~~a~~~~~~~~ 102 (105)
T 2dnh_A 91 VKFADTDKESGP 102 (105)
T ss_dssp EEESCSSCCCSC
T ss_pred EEECccCcccCC
Confidence 999999988765
No 51
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=2.4e-20 Score=147.89 Aligned_cols=84 Identities=65% Similarity=1.106 Sum_probs=79.2
Q ss_pred ccCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 013926 343 IEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 422 (434)
Q Consensus 343 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v 422 (434)
...+..++|||+|||.++++++|+++|+.||.|.+++|+.++.+|+++|||||+|.+.++|++|++.|||..|+|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34557799999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEec
Q 013926 423 QLKR 426 (434)
Q Consensus 423 ~~a~ 426 (434)
+++|
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9986
No 52
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=1.1e-20 Score=156.63 Aligned_cols=78 Identities=26% Similarity=0.448 Sum_probs=73.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|||+|||.++|+++|+++|+.||.|.+|+|+.+ ++|||||+|.+.++|.+|+..|||..|+|++|+|.+|+
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 5689999999999999999999999999999999766 58899999999999999999999999999999999998
Q ss_pred CCc
Q 013926 427 DNK 429 (434)
Q Consensus 427 ~~~ 429 (434)
.++
T Consensus 147 ~~~ 149 (150)
T 2i2y_A 147 GEK 149 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 875
No 53
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=142.72 Aligned_cols=87 Identities=22% Similarity=0.471 Sum_probs=82.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
++++|||+|||.++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|++|++.|||..|.|++|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 56899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCcCCCC
Q 013926 427 DNKQNKP 433 (434)
Q Consensus 427 ~~~~~~~ 433 (434)
.+....+
T Consensus 84 ~~~~~~~ 90 (95)
T 2dnz_A 84 ERLDGGS 90 (95)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 8876543
No 54
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=1.6e-20 Score=139.63 Aligned_cols=81 Identities=28% Similarity=0.458 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
.+.++|||+|||.++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|++|++.|||..++|++|+|.+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 36789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred c
Q 013926 426 R 426 (434)
Q Consensus 426 ~ 426 (434)
|
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 6
No 55
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=145.33 Aligned_cols=88 Identities=26% Similarity=0.423 Sum_probs=83.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 013926 425 KRDNKQNK 432 (434)
Q Consensus 425 a~~~~~~~ 432 (434)
|+.++...
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 99887654
No 56
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=143.25 Aligned_cols=87 Identities=24% Similarity=0.374 Sum_probs=82.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
.+.++|||+|||.++|+++|+++|+.||.|.+++|+.++.+++++|||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 36689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCcCCC
Q 013926 426 RDNKQNK 432 (434)
Q Consensus 426 ~~~~~~~ 432 (434)
+.++...
T Consensus 86 ~~~~~~~ 92 (99)
T 1whw_A 86 TIKKEAS 92 (99)
T ss_dssp CCCSTTC
T ss_pred CCCcccc
Confidence 9987643
No 57
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=2e-20 Score=147.31 Aligned_cols=82 Identities=35% Similarity=0.588 Sum_probs=76.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 013926 348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 427 (434)
Q Consensus 348 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~ 427 (434)
.++|||+|||.++|+++|+++|+.||.|.+|+|+.++ +.++|||||+|.+.++|++|++.|||..|+|++|+|.+++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999984 45899999999999999999999999999999999999988
Q ss_pred CcCC
Q 013926 428 NKQN 431 (434)
Q Consensus 428 ~~~~ 431 (434)
++..
T Consensus 83 ~~~~ 86 (115)
T 4f25_A 83 RKER 86 (115)
T ss_dssp CCC-
T ss_pred cccc
Confidence 7653
No 58
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-20 Score=144.91 Aligned_cols=88 Identities=24% Similarity=0.374 Sum_probs=83.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
....++|||+|||.++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 013926 425 KRDNKQNK 432 (434)
Q Consensus 425 a~~~~~~~ 432 (434)
|+.++...
T Consensus 92 a~~~~~~~ 99 (105)
T 1x5u_A 92 ASAHNKNL 99 (105)
T ss_dssp TTTTSCCC
T ss_pred CCCCCcCC
Confidence 99887643
No 59
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=3.1e-21 Score=145.01 Aligned_cols=85 Identities=25% Similarity=0.369 Sum_probs=73.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFG--RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG--~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
.+|||+|||.++|+++|+++|+.|| .|.+++|+.++.+|+++|||||+|.+.++|++|++.|||..|+|++|+|.+++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCC
Q 013926 427 DNKQNKP 433 (434)
Q Consensus 427 ~~~~~~~ 433 (434)
.++...|
T Consensus 82 ~~~~~~~ 88 (90)
T 3p5t_L 82 KLEHHHH 88 (90)
T ss_dssp -------
T ss_pred CCccccC
Confidence 8876654
No 60
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=1.5e-20 Score=143.21 Aligned_cols=84 Identities=24% Similarity=0.438 Sum_probs=80.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 013926 348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 427 (434)
Q Consensus 348 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~ 427 (434)
+++|||+|||.++++++|+++|+.||.|.+++|+.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+|.+|+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57899999999999999999999999999999999988999999999999999999999999999999999999999998
Q ss_pred CcCC
Q 013926 428 NKQN 431 (434)
Q Consensus 428 ~~~~ 431 (434)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 8653
No 61
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=142.41 Aligned_cols=86 Identities=26% Similarity=0.474 Sum_probs=81.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
...++|||+|||.++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|++|++ ||+..|.|+.|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 466899999999999999999999999999999999998899999999999999999999999 8999999999999999
Q ss_pred cCCcCCC
Q 013926 426 RDNKQNK 432 (434)
Q Consensus 426 ~~~~~~~ 432 (434)
+.+....
T Consensus 87 ~~~~~~~ 93 (99)
T 2dgs_A 87 EPRDSKS 93 (99)
T ss_dssp CCCCCCC
T ss_pred CCCcccC
Confidence 9887654
No 62
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=144.53 Aligned_cols=88 Identities=26% Similarity=0.510 Sum_probs=82.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
..+.++|||+|||.++++++|+++|+.||.|.+++|+.++.+++++|||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 013926 425 KRDNKQNK 432 (434)
Q Consensus 425 a~~~~~~~ 432 (434)
|+.+...+
T Consensus 89 a~~~~~~~ 96 (102)
T 1x5s_A 89 AGKSSDNR 96 (102)
T ss_dssp EECCCCCC
T ss_pred CCCCCCCC
Confidence 99887654
No 63
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.3e-20 Score=144.12 Aligned_cols=85 Identities=25% Similarity=0.392 Sum_probs=81.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
..+++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|.++|||||+|.+.++|++|++.|||..|+|+.|+|.+|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 46689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCcC
Q 013926 426 RDNKQ 430 (434)
Q Consensus 426 ~~~~~ 430 (434)
+.++.
T Consensus 101 ~~~~~ 105 (106)
T 1p27_B 101 FVRGP 105 (106)
T ss_dssp EESSC
T ss_pred cCCCC
Confidence 98764
No 64
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.2e-20 Score=141.97 Aligned_cols=86 Identities=27% Similarity=0.459 Sum_probs=80.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCC---CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKA---TGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
+.++|||+|||.++++++|+++|+.||.|.+|+|+.++. ++.++|||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 568899999999999999999999999999999999876 56899999999999999999999999999999999999
Q ss_pred EecCCcCCC
Q 013926 424 LKRDNKQNK 432 (434)
Q Consensus 424 ~a~~~~~~~ 432 (434)
+++.+....
T Consensus 84 ~a~~~~~~~ 92 (98)
T 2cpf_A 84 ISERATKPA 92 (98)
T ss_dssp CSSCSSCCC
T ss_pred EccCCCCCC
Confidence 999887654
No 65
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=2.1e-19 Score=146.80 Aligned_cols=88 Identities=34% Similarity=0.509 Sum_probs=83.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
....++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|||..|.|++|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 013926 425 KRDNKQNK 432 (434)
Q Consensus 425 a~~~~~~~ 432 (434)
|+.+...+
T Consensus 119 a~~~~~~~ 126 (139)
T 1u6f_A 119 AASGHQRP 126 (139)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 99887654
No 66
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=5.3e-20 Score=144.26 Aligned_cols=88 Identities=26% Similarity=0.445 Sum_probs=83.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhC------CceeCCe
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN------GCQLGGK 418 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~------g~~l~g~ 418 (434)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|.++|||||+|.+.++|++|+..|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3467899999999999999999999999999999999999899999999999999999999999999 9999999
Q ss_pred EEEEEEecCCcCCC
Q 013926 419 KLKVQLKRDNKQNK 432 (434)
Q Consensus 419 ~i~v~~a~~~~~~~ 432 (434)
+|+|.+++.++...
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999999887654
No 67
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=4.1e-20 Score=143.63 Aligned_cols=84 Identities=26% Similarity=0.529 Sum_probs=80.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
+..++|||+|||.++++++|+++|+.||.|.+++|+.++.+|+++|||||+|.+.++|++|++.|||..|+|++|+|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 36689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCc
Q 013926 426 RDNK 429 (434)
Q Consensus 426 ~~~~ 429 (434)
+.+.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 9875
No 68
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=144.31 Aligned_cols=88 Identities=25% Similarity=0.387 Sum_probs=82.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34668999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 013926 425 KRDNKQNK 432 (434)
Q Consensus 425 a~~~~~~~ 432 (434)
|+.++...
T Consensus 90 a~~~~~~~ 97 (103)
T 2dnm_A 90 ARYGRRDL 97 (103)
T ss_dssp CSSCCSCC
T ss_pred CCcCCCCC
Confidence 99876543
No 69
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=9e-20 Score=140.77 Aligned_cols=86 Identities=23% Similarity=0.435 Sum_probs=80.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
..+.++|||+|||.++++++|+++|+.|| |.+|+|+.++.+|+++|||||+|.+.++|++|+ .|||..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34568999999999999999999999997 999999999989999999999999999999999 8999999999999999
Q ss_pred ecCCcCCC
Q 013926 425 KRDNKQNK 432 (434)
Q Consensus 425 a~~~~~~~ 432 (434)
|+.+...+
T Consensus 90 a~~~~~~~ 97 (103)
T 2dng_A 90 AEGRKQDK 97 (103)
T ss_dssp CCCCCCCC
T ss_pred ecCCCCCC
Confidence 99887654
No 70
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.8e-20 Score=141.90 Aligned_cols=86 Identities=35% Similarity=0.571 Sum_probs=81.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
..+.++|||+|||.++|+++|+++|+.||.|.+++|+.+ +|.++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 446789999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 013926 425 KRDNKQNK 432 (434)
Q Consensus 425 a~~~~~~~ 432 (434)
|+.+....
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 99887654
No 71
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=3.6e-20 Score=144.94 Aligned_cols=87 Identities=25% Similarity=0.414 Sum_probs=82.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
....++|||+|||.++|+++|+++|+.||.|.+++|+.++.+|.++|||||+|.+.++|++|+..|||..|+|++|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCcCC
Q 013926 425 KRDNKQN 431 (434)
Q Consensus 425 a~~~~~~ 431 (434)
|+.++.+
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9988754
No 72
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-20 Score=142.23 Aligned_cols=86 Identities=28% Similarity=0.463 Sum_probs=81.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEE-EEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSA-KVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v-~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
++++|||+|||.++++++|+++|+.||.|.++ +|+.++.+|.++|||||+|.+.++|++|++.|||..|.|++|+|.+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56899999999999999999999999999999 99999889999999999999999999999999999999999999999
Q ss_pred cCCcCCC
Q 013926 426 RDNKQNK 432 (434)
Q Consensus 426 ~~~~~~~ 432 (434)
+.+....
T Consensus 84 ~~~~~~~ 90 (96)
T 1x5t_A 84 FKKDSKG 90 (96)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9887544
No 73
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=4.9e-20 Score=141.17 Aligned_cols=82 Identities=22% Similarity=0.429 Sum_probs=78.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS--------AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 416 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~ 416 (434)
.+..++|||+|||.++++++|+++|+.||.|.+ ++|+.++.+|+++|||||+|.+.++|++|++.|||..|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 346789999999999999999999999999999 999999889999999999999999999999999999999
Q ss_pred CeEEEEEEec
Q 013926 417 GKKLKVQLKR 426 (434)
Q Consensus 417 g~~i~v~~a~ 426 (434)
|++|+|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999985
No 74
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.1e-20 Score=144.66 Aligned_cols=88 Identities=27% Similarity=0.417 Sum_probs=81.5
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 344 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 344 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
.....++|||+|||.++|+++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|++|++.||+ .|.|++|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 344678999999999999999999999999999999999988999999999999999999999999998 8999999999
Q ss_pred EecCCcCCC
Q 013926 424 LKRDNKQNK 432 (434)
Q Consensus 424 ~a~~~~~~~ 432 (434)
+|+.+..++
T Consensus 92 ~a~~~~~~~ 100 (116)
T 2cqd_A 92 LAYLGAKPR 100 (116)
T ss_dssp ESTTTCCCC
T ss_pred EcccCCCcc
Confidence 998765544
No 75
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6e-20 Score=142.93 Aligned_cols=87 Identities=20% Similarity=0.424 Sum_probs=82.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEec-CCCCCeeeEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVD-KATGVSKCFGFVSYESPASAQNAIAMM-NGCQLGGKKLKV 422 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l-~g~~l~g~~i~v 422 (434)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+ +.++.++|||||+|.+.++|++|++.| |+..|.|++|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 446789999999999999999999999999999999998 789999999999999999999999999 999999999999
Q ss_pred EEecCCcCC
Q 013926 423 QLKRDNKQN 431 (434)
Q Consensus 423 ~~a~~~~~~ 431 (434)
.+|+.++..
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999987754
No 76
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=5.2e-20 Score=139.98 Aligned_cols=82 Identities=26% Similarity=0.458 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
....++|||+|||.++++++|+++|+.||.|.+++|+.++. |+++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34668999999999999999999999999999999999974 99999999999999999999999999999999999999
Q ss_pred ecC
Q 013926 425 KRD 427 (434)
Q Consensus 425 a~~ 427 (434)
|++
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 975
No 77
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=4e-20 Score=143.65 Aligned_cols=88 Identities=23% Similarity=0.417 Sum_probs=82.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCcee---CCeEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL---GGKKLK 421 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l---~g~~i~ 421 (434)
....++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|||..+ .|++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999998 899999
Q ss_pred EEEecCCcCCC
Q 013926 422 VQLKRDNKQNK 432 (434)
Q Consensus 422 v~~a~~~~~~~ 432 (434)
|.+|+.+....
T Consensus 90 v~~a~~~~~~~ 100 (106)
T 2dgp_A 90 VKPADSESRGG 100 (106)
T ss_dssp EEECCCCSCCC
T ss_pred EEECCcccccC
Confidence 99998877543
No 78
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=139.17 Aligned_cols=87 Identities=21% Similarity=0.350 Sum_probs=79.5
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 344 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 344 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
.....++|||+|||.++++++|+++|+.||.|.+|+|+.++. .++|||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 344678999999999999999999999999999999999853 368999999999999999999999999999999999
Q ss_pred EecCCcCCC
Q 013926 424 LKRDNKQNK 432 (434)
Q Consensus 424 ~a~~~~~~~ 432 (434)
+++.+...+
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqi_A 89 WATTPSSQK 97 (103)
T ss_dssp ECCCTTCCC
T ss_pred ECCCCcccc
Confidence 999877654
No 79
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=3.5e-20 Score=148.73 Aligned_cols=87 Identities=21% Similarity=0.437 Sum_probs=82.1
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 344 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 344 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
...+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EecCCcC
Q 013926 424 LKRDNKQ 430 (434)
Q Consensus 424 ~a~~~~~ 430 (434)
+|+.++.
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9998763
No 80
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.4e-20 Score=139.94 Aligned_cols=84 Identities=18% Similarity=0.273 Sum_probs=79.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
+..++|||+|||.++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|++|++.|||..|+|++|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 35688999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCc
Q 013926 426 RDNK 429 (434)
Q Consensus 426 ~~~~ 429 (434)
+.+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8654
No 81
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=140.72 Aligned_cols=84 Identities=18% Similarity=0.408 Sum_probs=79.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCC-CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT-GVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
.+.++|||+|||.++++++|+++|+.|| |.+|+|+.++.+ |+++|||||+|.+.++|++|+ .||+..|.|++|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999999877 999999999999999999999 8999999999999999
Q ss_pred ecCCcCC
Q 013926 425 KRDNKQN 431 (434)
Q Consensus 425 a~~~~~~ 431 (434)
|+.++..
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9988754
No 82
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=9.3e-21 Score=145.22 Aligned_cols=83 Identities=24% Similarity=0.319 Sum_probs=79.0
Q ss_pred CCceEEEcCCCC------CCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC-eE
Q 013926 347 PGANLFIYHIPQ------EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG-KK 419 (434)
Q Consensus 347 ~~~~v~V~nLp~------~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g-~~ 419 (434)
.+++|||+|||. ++++++|+++|+.||.|.+|+|+.++.+|+++|||||.|.+.++|++|++.|||..|.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999899999999999999999999999999999999 99
Q ss_pred EEEEEecCCc
Q 013926 420 LKVQLKRDNK 429 (434)
Q Consensus 420 i~v~~a~~~~ 429 (434)
|+|.+|+++.
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999997653
No 83
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.6e-20 Score=140.16 Aligned_cols=85 Identities=21% Similarity=0.399 Sum_probs=80.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeE-EEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeE----E
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVL-SAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK----L 420 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~----i 420 (434)
...++|||+|||.++++++|+++|+.||.|. +++|+.++.+|+++|||||+|.+.++|++|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3668999999999999999999999999999 9999999989999999999999999999999999999999999 9
Q ss_pred EEEEecCCcC
Q 013926 421 KVQLKRDNKQ 430 (434)
Q Consensus 421 ~v~~a~~~~~ 430 (434)
+|.+|+....
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 9999987654
No 84
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.7e-20 Score=143.45 Aligned_cols=88 Identities=27% Similarity=0.456 Sum_probs=82.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVL--------SAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 416 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~ 416 (434)
....++|||+|||.++|+++|+++|+.||.|. .|+|+.++.+|+++|||||+|.+.++|++|++.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 44678999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred CeEEEEEEecCCcCCC
Q 013926 417 GKKLKVQLKRDNKQNK 432 (434)
Q Consensus 417 g~~i~v~~a~~~~~~~ 432 (434)
|++|+|.+++.+....
T Consensus 92 g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 92 GSKLKVSLARKKPPMN 107 (113)
T ss_dssp TEECEEECSSCCCCST
T ss_pred CCEEEEEECCCCCCCC
Confidence 9999999999887543
No 85
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3e-19 Score=137.85 Aligned_cols=87 Identities=28% Similarity=0.513 Sum_probs=79.6
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 344 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 344 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
.....++|||+|||.++++++|+++|+.||.|.+|+|+.++. .++|||||+|.+.++|++|++.|||..|+|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344678999999999999999999999999999999998853 389999999999999999999999999999999999
Q ss_pred EecCCcCCC
Q 013926 424 LKRDNKQNK 432 (434)
Q Consensus 424 ~a~~~~~~~ 432 (434)
+|+.+....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cq3_A 89 NATARVMTN 97 (103)
T ss_dssp ECCSSCCCC
T ss_pred EcccCCCCC
Confidence 999887544
No 86
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.6e-19 Score=140.16 Aligned_cols=85 Identities=28% Similarity=0.465 Sum_probs=79.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
....++|||+|||.++++++|+++|+.||.|.+|+|+.++ +|+++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3467899999999999999999999999999999999997 699999999999999999999999999999999999999
Q ss_pred ecCCcC
Q 013926 425 KRDNKQ 430 (434)
Q Consensus 425 a~~~~~ 430 (434)
++....
T Consensus 91 a~~~~~ 96 (114)
T 2do0_A 91 DERALP 96 (114)
T ss_dssp CSCCCC
T ss_pred cccCCC
Confidence 986543
No 87
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=9.2e-20 Score=141.29 Aligned_cols=87 Identities=21% Similarity=0.359 Sum_probs=82.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
....++|||+|||.++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|++|++. |+..|.|++|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 44678999999999999999999999999999999999988999999999999999999999998 99999999999999
Q ss_pred ecCCcCCC
Q 013926 425 KRDNKQNK 432 (434)
Q Consensus 425 a~~~~~~~ 432 (434)
++.+...+
T Consensus 92 a~~~~~~~ 99 (105)
T 2dh8_A 92 CTPRGMQP 99 (105)
T ss_dssp SCCSSCCT
T ss_pred ccCCCCCC
Confidence 99887654
No 88
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=137.81 Aligned_cols=84 Identities=23% Similarity=0.309 Sum_probs=77.9
Q ss_pred CCceEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 013926 347 PGANLFIYHIPQEFGDQELG----NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 422 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~----~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v 422 (434)
..++|||+|||.++++++|+ ++|+.||.|.+|+|+.++.+ +|||||+|.+.++|++|++.|||..|+|++|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 56899999999999999999 99999999999999988654 889999999999999999999999999999999
Q ss_pred EEecCCcCCCC
Q 013926 423 QLKRDNKQNKP 433 (434)
Q Consensus 423 ~~a~~~~~~~~ 433 (434)
.+|+.+..+.|
T Consensus 85 ~~a~~~~~~~~ 95 (96)
T 2dgx_A 85 SLATGASGPSS 95 (96)
T ss_dssp EECCCSSCCCC
T ss_pred EEcCCCCCCCC
Confidence 99998876544
No 89
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=9e-20 Score=137.17 Aligned_cols=80 Identities=23% Similarity=0.283 Sum_probs=73.1
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCce--eCCeEEE
Q 013926 344 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ--LGGKKLK 421 (434)
Q Consensus 344 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~--l~g~~i~ 421 (434)
..+++++|||+|||+++|+++|+++|+.||.|.+|+++++ +|+|||+|.+.++|.+|++.||+.. |.|++|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 3457789999999999999999999999999999999753 6799999999999999999999875 7899999
Q ss_pred EEEecCCc
Q 013926 422 VQLKRDNK 429 (434)
Q Consensus 422 v~~a~~~~ 429 (434)
|.+|+++.
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99999875
No 90
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=7.1e-19 Score=140.59 Aligned_cols=87 Identities=25% Similarity=0.374 Sum_probs=82.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
..+++|||+|||.++++++|+++|+.||.|.+|+|+.++ +|+++|||||+|.+.++|.+|++.|||..|+|++|+|.+|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 366899999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred cCCcCCCC
Q 013926 426 RDNKQNKP 433 (434)
Q Consensus 426 ~~~~~~~~ 433 (434)
..+....|
T Consensus 112 ~~~~~~~~ 119 (124)
T 2kt5_A 112 ASQIDLEH 119 (124)
T ss_dssp CCTTCCCC
T ss_pred CCCCCCCC
Confidence 98877665
No 91
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=136.02 Aligned_cols=83 Identities=18% Similarity=0.374 Sum_probs=78.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCC-eeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGV-SKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~-~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
..++|||+|||.++|+++|+++|+.||.|.+++++.++.++. ++|||||+|.+.++|++|++.|||..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999999877665 8999999999999999999999999999999999999
Q ss_pred cCCc
Q 013926 426 RDNK 429 (434)
Q Consensus 426 ~~~~ 429 (434)
+..+
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8765
No 92
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.9e-19 Score=136.64 Aligned_cols=85 Identities=25% Similarity=0.412 Sum_probs=79.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
..+.++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|++|++ ++..|+|++|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3466899999999999999999999999999999999998899999999999999999999999 48899999999999
Q ss_pred ecCCcCC
Q 013926 425 KRDNKQN 431 (434)
Q Consensus 425 a~~~~~~ 431 (434)
++.+...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9988754
No 93
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=143.00 Aligned_cols=85 Identities=31% Similarity=0.469 Sum_probs=80.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
...++|||+|||.++|+++|+++|+.||.|.+|+|+.++ +|+++|||||+|.+.++|++|++.|||..|.|++|+|.+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 356899999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred cCCcCC
Q 013926 426 RDNKQN 431 (434)
Q Consensus 426 ~~~~~~ 431 (434)
+.+...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 877643
No 94
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.9e-19 Score=133.86 Aligned_cols=83 Identities=12% Similarity=0.267 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
...++|||+|||.++++++|+++|+.| .|.+++|+.+ .+|+++|||||+|.+.++|++|+. |||..|+|+.|+|.+|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 356899999999999999999999999 9999999999 689999999999999999999999 9999999999999999
Q ss_pred cCCcCC
Q 013926 426 RDNKQN 431 (434)
Q Consensus 426 ~~~~~~ 431 (434)
+.++..
T Consensus 85 ~~~~~s 90 (91)
T 2dgw_A 85 KSGPSS 90 (91)
T ss_dssp SSCCCC
T ss_pred CcCCCC
Confidence 988754
No 95
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.81 E-value=2.8e-19 Score=133.44 Aligned_cols=80 Identities=21% Similarity=0.452 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
....++|||+|||.++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|++|++. ++..|.|++|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999988999999999999999999999974 89999999999998
Q ss_pred e
Q 013926 425 K 425 (434)
Q Consensus 425 a 425 (434)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 96
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=140.71 Aligned_cols=86 Identities=26% Similarity=0.437 Sum_probs=80.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCce-eCCeEEEEE
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQA-FGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ-LGGKKLKVQ 423 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~-fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-l~g~~i~v~ 423 (434)
.+.++|||+|||.++|+++|+++|+. ||.|.+|+|+.++ +|+++|||||+|.+.++|.+|++.|||.. |+|++|+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 46689999999999999999999999 9999999999998 99999999999999999999999999999 999999999
Q ss_pred EecCCcCCC
Q 013926 424 LKRDNKQNK 432 (434)
Q Consensus 424 ~a~~~~~~~ 432 (434)
+|+.+...+
T Consensus 86 ~a~~~~~~~ 94 (104)
T 2dhg_A 86 VAIPKASRV 94 (104)
T ss_dssp BCCCCCSCC
T ss_pred EccCCCcCC
Confidence 998776543
No 97
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=1.2e-19 Score=141.40 Aligned_cols=87 Identities=24% Similarity=0.388 Sum_probs=78.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
....++|||+|||.++|+++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|.+|++.+ +..|+|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 446789999999999999999999999999999999999889999999999999999999999986 6999999999999
Q ss_pred ecCCcCCC
Q 013926 425 KRDNKQNK 432 (434)
Q Consensus 425 a~~~~~~~ 432 (434)
|+.+...+
T Consensus 101 a~~~~~~~ 108 (109)
T 2rs2_A 101 AFPRRAQP 108 (109)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 99887654
No 98
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=1.9e-19 Score=135.95 Aligned_cols=84 Identities=32% Similarity=0.582 Sum_probs=79.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
.+.++|||+|||.++++++|+++|+.||.|.+++|+.+ +|+++|||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 36689999999999999999999999999999999874 7899999999999999999999999999999999999999
Q ss_pred cCCcCC
Q 013926 426 RDNKQN 431 (434)
Q Consensus 426 ~~~~~~ 431 (434)
+.+..+
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 988754
No 99
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=1.9e-19 Score=135.06 Aligned_cols=82 Identities=21% Similarity=0.439 Sum_probs=78.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|||+|||.++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|++|+ .|||..|.|++|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3478999999999999999999999999999999999889999999999999999999999 899999999999999998
Q ss_pred CCc
Q 013926 427 DNK 429 (434)
Q Consensus 427 ~~~ 429 (434)
.+.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 754
No 100
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=5.8e-20 Score=139.70 Aligned_cols=81 Identities=16% Similarity=0.234 Sum_probs=76.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|||+|||.++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|++|++.|||..|.|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 56899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred C
Q 013926 427 D 427 (434)
Q Consensus 427 ~ 427 (434)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 5
No 101
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.1e-19 Score=138.06 Aligned_cols=86 Identities=19% Similarity=0.454 Sum_probs=78.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
....++|||+|||.++|+++|+++|+.||.|.+++|..+ +.++|||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 446789999999999999999999999999999999544 55899999999999999999999999999999999999
Q ss_pred ecCCcCCCC
Q 013926 425 KRDNKQNKP 433 (434)
Q Consensus 425 a~~~~~~~~ 433 (434)
++.++...+
T Consensus 96 a~~~~~~~~ 104 (109)
T 1x4a_A 96 PRSGRGTGS 104 (109)
T ss_dssp CCCCCCCCC
T ss_pred cccCCCCCC
Confidence 998876543
No 102
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=3.1e-19 Score=138.83 Aligned_cols=81 Identities=27% Similarity=0.443 Sum_probs=77.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
.+.++|||+|||.++|+++|+++|+.||.|.+|+|+.++ +|+++|||||+|.+.++|++|++.|||..|.|+.|+|.+|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 367899999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred cC
Q 013926 426 RD 427 (434)
Q Consensus 426 ~~ 427 (434)
.+
T Consensus 106 ~s 107 (107)
T 3ulh_A 106 TS 107 (107)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 103
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.3e-20 Score=138.84 Aligned_cols=81 Identities=17% Similarity=0.302 Sum_probs=73.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN--GCQLGGKKLKV 422 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~--g~~l~g~~i~v 422 (434)
.++.++|||+|||+++|+++|+++|+.||.|.+|+|+++ +|||||+|.+.++|.+|++.|+ +..|.|++|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346789999999999999999999999999999999865 6899999999999999999886 47999999999
Q ss_pred EEecCCcCC
Q 013926 423 QLKRDNKQN 431 (434)
Q Consensus 423 ~~a~~~~~~ 431 (434)
.+|+.+...
T Consensus 87 ~~A~~~~~~ 95 (105)
T 1sjq_A 87 QFSNHKELK 95 (105)
T ss_dssp CCCSSSSCC
T ss_pred EEcCCCCCC
Confidence 999988754
No 104
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.5e-19 Score=130.68 Aligned_cols=74 Identities=14% Similarity=0.275 Sum_probs=69.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
.+.-|||+||+..+|+++|+++|.+||+|.++++.. ++|||||+|.++++|.+|++.||+..|+||.|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 346799999999999999999999999999999854 58999999999999999999999999999999999994
No 105
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=149.57 Aligned_cols=82 Identities=23% Similarity=0.304 Sum_probs=77.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFG--RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG--~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
..++|||+|||.++|+++|+++|+.|| .|.+|+|+.++.+|+++|||||+|.+.++|++|++.|||..|+|++|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 458999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 013926 425 KRDN 428 (434)
Q Consensus 425 a~~~ 428 (434)
|+.+
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9754
No 106
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=5e-19 Score=147.57 Aligned_cols=88 Identities=20% Similarity=0.320 Sum_probs=83.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
...++|||+|||.++|+++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|++|++.||+..|.|++|+|.+|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 36689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCcCCCC
Q 013926 426 RDNKQNKP 433 (434)
Q Consensus 426 ~~~~~~~~ 433 (434)
+.+...+.
T Consensus 117 ~~~~~~~~ 124 (156)
T 1h2v_Z 117 AGFKEGRQ 124 (156)
T ss_dssp SCCCTTCC
T ss_pred CCCCCcCC
Confidence 98776543
No 107
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=5.4e-20 Score=148.49 Aligned_cols=85 Identities=15% Similarity=0.340 Sum_probs=80.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEE--EEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCc----eeCCe
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS--AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC----QLGGK 418 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~----~l~g~ 418 (434)
....++|||+|||+++|+++|+++|+.||.|.. |+|++++.+|+++|||||+|.+. +|.+|+..|||. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 456789999999999999999999999999977 99999999999999999999999 999999999999 99999
Q ss_pred EEEEEEecCCcC
Q 013926 419 KLKVQLKRDNKQ 430 (434)
Q Consensus 419 ~i~v~~a~~~~~ 430 (434)
+|+|.+|+.+..
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999988753
No 108
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=137.79 Aligned_cols=83 Identities=13% Similarity=0.236 Sum_probs=74.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCc--eeCCeEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC--QLGGKKLKV 422 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~l~g~~i~v 422 (434)
.+++++|||+|||.++++++|+++|+.||.|.+|+|+++ +|||||+|.+.++|.+|++.|++. .|.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 446789999999999999999999999999999998753 689999999999999999998764 599999999
Q ss_pred EEecCCcCCCC
Q 013926 423 QLKRDNKQNKP 433 (434)
Q Consensus 423 ~~a~~~~~~~~ 433 (434)
.+|+.+....|
T Consensus 86 ~~a~~~~~~~~ 96 (104)
T 1wex_A 86 NYSTSKRITRP 96 (104)
T ss_dssp EECSSSSCCCS
T ss_pred EEccCccccCC
Confidence 99998876554
No 109
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=140.99 Aligned_cols=84 Identities=29% Similarity=0.530 Sum_probs=77.7
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 344 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 344 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
.....++|||+|||.++++++|+++|+.||.|.+++++.++ +.++|||||+|.+.++|++|++.|||..|+|++|+|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999884 4589999999999999999999999999999999999
Q ss_pred EecCCc
Q 013926 424 LKRDNK 429 (434)
Q Consensus 424 ~a~~~~ 429 (434)
+|+.+.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 998763
No 110
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=1.7e-19 Score=144.75 Aligned_cols=88 Identities=25% Similarity=0.389 Sum_probs=82.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
....++|||+|||.++|+++|+++|+.||.|.+|.|+.++.+++++|||||+|.+.++|++|++.|||..|.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 013926 425 KRDNKQNK 432 (434)
Q Consensus 425 a~~~~~~~ 432 (434)
|+.+...+
T Consensus 99 a~~~~~~~ 106 (126)
T 3ex7_B 99 CFVRGPPK 106 (126)
T ss_dssp SEESSSCC
T ss_pred ecCCCCCC
Confidence 98877654
No 111
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=141.77 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=80.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|||+|||.++|+++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|++|++. |+..|+|++|+|.+|+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 458999999999999999999999999999999999988999999999999999999999998 9999999999999999
Q ss_pred CCcCCC
Q 013926 427 DNKQNK 432 (434)
Q Consensus 427 ~~~~~~ 432 (434)
.+....
T Consensus 105 ~~~~~~ 110 (116)
T 1x4b_A 105 AREESG 110 (116)
T ss_dssp SCCCCC
T ss_pred CCccCC
Confidence 887654
No 112
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.8e-19 Score=134.48 Aligned_cols=82 Identities=18% Similarity=0.279 Sum_probs=73.8
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHh--CCceeCCeEEE
Q 013926 344 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM--NGCQLGGKKLK 421 (434)
Q Consensus 344 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~l~g~~i~ 421 (434)
..+++++|||+|||.++++++|+++|+.||.|.+|.++.+ +|||||+|.+.++|.+|++.| ++..|.|++|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456789999999999999999999999999999988754 689999999999999999987 47789999999
Q ss_pred EEEecCCcCC
Q 013926 422 VQLKRDNKQN 431 (434)
Q Consensus 422 v~~a~~~~~~ 431 (434)
|.+|+.+...
T Consensus 85 V~~a~~~~~~ 94 (101)
T 2cq1_A 85 IQYSNHKELK 94 (101)
T ss_dssp EEECSCSSCC
T ss_pred EEEcCcccCc
Confidence 9999987654
No 113
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=1.6e-19 Score=142.05 Aligned_cols=99 Identities=17% Similarity=0.265 Sum_probs=69.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeee
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 91 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~ 91 (434)
.+++|||+|||+++|+++|+++|+.||.|.+|+++.++. .++ ||||+|.+.++|++||+.||+.. +.| +.|.|.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~-~~g--~~i~V~ 78 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGML-LND--RKVFVG 78 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCE-ECC--EEEEEE
Confidence 467899999999999999999999999999999999864 356 99999999999999999999876 666 777777
Q ss_pred ccCccccc---------CCCeEEEeCCCCCCcHH
Q 013926 92 YADGELER---------LEHKLFIGMLPKNVSEA 116 (434)
Q Consensus 92 ~~~~~~~~---------~~~~v~v~nlp~~~~~~ 116 (434)
++..+... ...+|||+|||+++|++
T Consensus 79 ~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 79 RFKSRKEREAELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp ESSCCCC---------------------------
T ss_pred ECCCccccccccccccCCCCceEeCCCCCCcccc
Confidence 76543322 13579999999999876
No 114
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1e-19 Score=143.31 Aligned_cols=83 Identities=23% Similarity=0.364 Sum_probs=78.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|||+|||.++++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|++|+ .|||..|.|+.|+|.+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 4589999999999999999999999999999999999888999999999999999999999 899999999999999998
Q ss_pred CCcC
Q 013926 427 DNKQ 430 (434)
Q Consensus 427 ~~~~ 430 (434)
.++.
T Consensus 103 ~~~~ 106 (114)
T 2cq4_A 103 AEKN 106 (114)
T ss_dssp HHHH
T ss_pred CCcc
Confidence 7653
No 115
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=4.4e-19 Score=148.32 Aligned_cols=136 Identities=20% Similarity=0.271 Sum_probs=105.1
Q ss_pred EEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC----Cceeeecc-------CcccccCCCeEEEeCCC
Q 013926 43 EVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS----SPLQVKYA-------DGELERLEHKLFIGMLP 110 (434)
Q Consensus 43 ~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~----~~i~~~~~-------~~~~~~~~~~v~v~nlp 110 (434)
.++++.+.. .++ ||||+|.+.++|++|++.+++...+.+.. ........ .........+|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 356667654 355 99999999999999999987643332210 00010000 11112336899999999
Q ss_pred CCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeeccCh
Q 013926 111 KNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 183 (434)
Q Consensus 111 ~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~~~ 183 (434)
+++++++|+++|+.||.|..|.+..+. +|.++|||||+|.+.++|.+|++.|++.. ++|+ .|.|.++...
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~v~~a~~~ 150 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV-LDGR--ELRVQMARYG 150 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEE-SSSS--EEEEEEECCS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECCe--EEEEEECCCC
Confidence 999999999999999999999999986 78899999999999999999999999976 7777 6888888654
No 116
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=139.35 Aligned_cols=84 Identities=29% Similarity=0.533 Sum_probs=80.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|||+|||.++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|++|++.|||..|.|+.|+|.+|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45889999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCcC
Q 013926 427 DNKQ 430 (434)
Q Consensus 427 ~~~~ 430 (434)
.+..
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 8764
No 117
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=5.8e-19 Score=144.49 Aligned_cols=82 Identities=28% Similarity=0.445 Sum_probs=77.2
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 344 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 344 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
.....++|||+|||.++++++|+++|+.||.|.+++|+.++.+|+++|||||+|.+.++|++|++.|||..|+|++|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Ee
Q 013926 424 LK 425 (434)
Q Consensus 424 ~a 425 (434)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 118
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-19 Score=138.58 Aligned_cols=79 Identities=19% Similarity=0.235 Sum_probs=75.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|||+|||.++|+++|+++|+.||.|.+|+|+.++. |.++|||||+|.+.++|.+|+. +||..|+|+.|+|.+++
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 568999999999999999999999999999999999976 9999999999999999999999 89999999999999876
Q ss_pred C
Q 013926 427 D 427 (434)
Q Consensus 427 ~ 427 (434)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 119
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=7.5e-20 Score=140.29 Aligned_cols=82 Identities=17% Similarity=0.401 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK-ATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
...++|||+|||.++++++|+++|+.|| |.+|+|+.++ .+|+++|||||+|.+.++|.+|+ .|||..|+|++|+|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4668999999999999999999999999 9999999997 58999999999999999999999 8999999999999999
Q ss_pred ecCCc
Q 013926 425 KRDNK 429 (434)
Q Consensus 425 a~~~~ 429 (434)
|+.+.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98875
No 120
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.5e-19 Score=135.10 Aligned_cols=84 Identities=18% Similarity=0.323 Sum_probs=76.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
....++|||+|||.++|+++|+++|+.||.| +++.+ .+++++|||||+|.+.++|++|++.|||..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4467899999999999999999999999987 56666 5899999999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 013926 425 KRDNKQNK 432 (434)
Q Consensus 425 a~~~~~~~ 432 (434)
++.++...
T Consensus 88 a~~~~~~~ 95 (101)
T 2fc9_A 88 QGPRGSPN 95 (101)
T ss_dssp CSSCCCCC
T ss_pred cCCCCCCC
Confidence 99887544
No 121
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3e-19 Score=135.86 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=71.8
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCc--eeCCeEEEE
Q 013926 346 PPGANLFIYHIPQ-EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC--QLGGKKLKV 422 (434)
Q Consensus 346 ~~~~~v~V~nLp~-~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~l~g~~i~v 422 (434)
.++++|||+|||+ ++|++||+++|+.||.|.+|+|+++ +|||||+|.+.++|.+|++.||+. .|.|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3678999999999 9999999999999999999999865 479999999999999999999864 599999999
Q ss_pred EEecCCcC
Q 013926 423 QLKRDNKQ 430 (434)
Q Consensus 423 ~~a~~~~~ 430 (434)
.+|+.++.
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99997654
No 122
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5e-20 Score=136.91 Aligned_cols=81 Identities=27% Similarity=0.473 Sum_probs=77.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
+.++|||+|||.++++++|+++|+.||.|.+++|+.++.+|.++|||||+|.+.++|++|++.|||..|.|+.|++++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 56899999999999999999999999999999999998899999999999999999999999999999999999988766
Q ss_pred C
Q 013926 427 D 427 (434)
Q Consensus 427 ~ 427 (434)
+
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 123
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5e-19 Score=138.41 Aligned_cols=85 Identities=20% Similarity=0.294 Sum_probs=78.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHH---HHhhccCCeEEEEEEecCCCC---CeeeEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 013926 345 GPPGANLFIYHIPQEFGDQELG---NAFQAFGRVLSAKVFVDKATG---VSKCFGFVSYESPASAQNAIAMMNGCQLGGK 418 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~---~~F~~fG~v~~v~i~~~~~~g---~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~ 418 (434)
....++|||+|||.++++++|+ ++|+.||.|.+++|+.++.++ .++|||||+|.+.++|++|++.|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3356889999999999999999 999999999999999887643 5669999999999999999999999999999
Q ss_pred EEEEEEecCCc
Q 013926 419 KLKVQLKRDNK 429 (434)
Q Consensus 419 ~i~v~~a~~~~ 429 (434)
+|+|.+|+.+.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999999886
No 124
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=3.7e-19 Score=140.61 Aligned_cols=81 Identities=15% Similarity=0.168 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGR---VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 422 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~---v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v 422 (434)
...++|||+|||+++|+++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|++|++ ||+..|+||.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 35689999999999999999999999999 89999999975 9999999999999999999999 8999999999999
Q ss_pred EEecCC
Q 013926 423 QLKRDN 428 (434)
Q Consensus 423 ~~a~~~ 428 (434)
.++..+
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 125
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.6e-19 Score=135.52 Aligned_cols=83 Identities=12% Similarity=0.206 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
...++|||+|||+++|++||+++|+.||. ++|+|+.++ +|+++|||||+|.+.++|++|++ +|+..|+||.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 35689999999999999999999999994 599999997 89999999999999999999995 7999999999999998
Q ss_pred cCCcCC
Q 013926 426 RDNKQN 431 (434)
Q Consensus 426 ~~~~~~ 431 (434)
......
T Consensus 90 ~~~~~~ 95 (102)
T 1wez_A 90 STAGTS 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876644
No 126
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=133.52 Aligned_cols=85 Identities=25% Similarity=0.501 Sum_probs=78.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
..+.++|||+|||.++++++|+++|+.| ..++++.++.+++++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4467899999999999999999999987 3678888888999999999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 013926 425 KRDNKQNK 432 (434)
Q Consensus 425 a~~~~~~~ 432 (434)
|+.+....
T Consensus 89 a~~~~~~~ 96 (102)
T 2fc8_A 89 AKPKGEGG 96 (102)
T ss_dssp CCCCCSSS
T ss_pred ecCCCCCC
Confidence 99887654
No 127
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.1e-19 Score=137.25 Aligned_cols=82 Identities=17% Similarity=0.299 Sum_probs=74.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN--GCQLGGKKLKV 422 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~--g~~l~g~~i~v 422 (434)
.+++++|||+|||+++|+++|+++|+.||.|.+|+|+.+ +|||||+|.+.++|.+|++.|+ +..|.|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 446789999999999999999999999999999999865 6899999999999999999987 46899999999
Q ss_pred EEecCCcCCC
Q 013926 423 QLKRDNKQNK 432 (434)
Q Consensus 423 ~~a~~~~~~~ 432 (434)
.+|+.+....
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9999887554
No 128
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.3e-19 Score=138.52 Aligned_cols=85 Identities=25% Similarity=0.279 Sum_probs=79.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEE-ecCCCCCeeeEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEE
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGR-VLSAKVF-VDKATGVSKCFGFVSYESPASAQNAIAMMN--GCQLGGKKLKV 422 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~-v~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~A~~~l~--g~~l~g~~i~v 422 (434)
+.++|||+|||.++|+++|+++|+.||. |.++.++ .++.+|.++|||||+|.+.++|.+|++.|| +..+.|++|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 5689999999999999999999999998 9999998 787788999999999999999999999996 59999999999
Q ss_pred EEecCCcCC
Q 013926 423 QLKRDNKQN 431 (434)
Q Consensus 423 ~~a~~~~~~ 431 (434)
.+|+.++..
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999988764
No 129
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.78 E-value=1.1e-18 Score=139.63 Aligned_cols=84 Identities=20% Similarity=0.383 Sum_probs=79.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|||+|||.++|+++|+++|+.||.|.+|+|+.++.+|.++|||||+|.+.++|.+|+ .|||..|+|++|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4589999999999999999999999999999999999889999999999999999999999 799999999999999998
Q ss_pred CCcCC
Q 013926 427 DNKQN 431 (434)
Q Consensus 427 ~~~~~ 431 (434)
.....
T Consensus 114 ~~~~~ 118 (124)
T 2jwn_A 114 TNMPG 118 (124)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 76643
No 130
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=1.6e-18 Score=145.76 Aligned_cols=86 Identities=26% Similarity=0.417 Sum_probs=80.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||.|.+.++|.+|+..|||..|.|+.|+|.||
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCcCC
Q 013926 426 RDNKQN 431 (434)
Q Consensus 426 ~~~~~~ 431 (434)
+.+...
T Consensus 150 ~~~~~~ 155 (165)
T 1rk8_A 150 FVKGPK 155 (165)
T ss_dssp EECC--
T ss_pred cCCCCC
Confidence 887654
No 131
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=2.1e-19 Score=130.13 Aligned_cols=75 Identities=21% Similarity=0.399 Sum_probs=72.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 350 ~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
+|||+|||.++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|++|++ |||..++|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998899999999999999999999998 8999999999999876
No 132
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=7.7e-20 Score=137.46 Aligned_cols=83 Identities=23% Similarity=0.449 Sum_probs=74.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 428 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~~ 428 (434)
++|||+|||.++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.+ |.+|+..|||..++|++|+|.+|..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999889999999999999999 99999999999999999999999887
Q ss_pred cCCC
Q 013926 429 KQNK 432 (434)
Q Consensus 429 ~~~~ 432 (434)
....
T Consensus 81 ~~~~ 84 (90)
T 2ki2_A 81 KSLE 84 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 133
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.1e-18 Score=134.08 Aligned_cols=84 Identities=27% Similarity=0.500 Sum_probs=78.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCcee--------C
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL--------G 416 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l--------~ 416 (434)
....++|||+|||.++++++|+++|+.||.|.+++|+.++ +|.++|||||+|.+.++|++|++.|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3466899999999999999999999999999999999997 999999999999999999999999999999 6
Q ss_pred CeEEEEEEecCCc
Q 013926 417 GKKLKVQLKRDNK 429 (434)
Q Consensus 417 g~~i~v~~a~~~~ 429 (434)
+++|+|.||+.+.
T Consensus 101 ~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 101 TEPLLCKFSGPSS 113 (114)
T ss_dssp SSCBEEEECCCSC
T ss_pred CCceeEEccCCCC
Confidence 7889999998653
No 134
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.7e-19 Score=139.23 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCe-EEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRV-LSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
...++|||+|||+++|+++|+++|+.||.| .+|+|+.++ +|+++|||||+|.+.++|++|++. |+..|+|+.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 356899999999999999999999999999 899999997 999999999999999999999997 99999999999999
Q ss_pred ecCCc
Q 013926 425 KRDNK 429 (434)
Q Consensus 425 a~~~~ 429 (434)
|..+.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97654
No 135
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-19 Score=130.73 Aligned_cols=76 Identities=25% Similarity=0.393 Sum_probs=73.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
++|||+|||.++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|++|++.++ ..++|++|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998899999999999999999999999998 9999999999987
No 136
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=2.2e-19 Score=145.32 Aligned_cols=86 Identities=26% Similarity=0.422 Sum_probs=81.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|||+|||.++|+++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|++|++.|||..|.|++|+|.+|+
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 56889999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCcCCC
Q 013926 427 DNKQNK 432 (434)
Q Consensus 427 ~~~~~~ 432 (434)
.++.+.
T Consensus 126 ~~~~~~ 131 (135)
T 2lea_A 126 YGRPPD 131 (135)
T ss_dssp CCCCCT
T ss_pred CCCCCc
Confidence 876543
No 137
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=9.4e-19 Score=139.20 Aligned_cols=81 Identities=17% Similarity=0.292 Sum_probs=73.9
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 013926 346 PPGANLFIYHIPQEFGDQELG----NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 421 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~----~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~ 421 (434)
+++++|||+|||..+++++|+ ++|+.||.|.+|.+.. +++++|||||+|.+.++|.+|++.|||..|.|++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 457899999999999999866 7999999999988743 678999999999999999999999999999999999
Q ss_pred EEEecCCc
Q 013926 422 VQLKRDNK 429 (434)
Q Consensus 422 v~~a~~~~ 429 (434)
|.||+.+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99999765
No 138
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=130.19 Aligned_cols=79 Identities=28% Similarity=0.553 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
.+.++|||+|||.++++++|+++|+.||.|.+++++ +|||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 366899999999999999999999999999999996 569999999999999999999999999999999999
Q ss_pred cCCcCCC
Q 013926 426 RDNKQNK 432 (434)
Q Consensus 426 ~~~~~~~ 432 (434)
+.+....
T Consensus 78 ~~~~~~~ 84 (90)
T 2dnq_A 78 KNKSKAS 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9887654
No 139
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.5e-19 Score=139.35 Aligned_cols=88 Identities=20% Similarity=0.382 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
.+.++|||+|||.++|+++|+++|+.||.|.++.+..+..+|+++|||||+|.+.++|++|++.|||..|.|++|+|.+|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 46689999999999999999999999999943322222237889999999999999999999999999999999999999
Q ss_pred cCCcCCCC
Q 013926 426 RDNKQNKP 433 (434)
Q Consensus 426 ~~~~~~~~ 433 (434)
+.++...+
T Consensus 103 ~~~~~~~~ 110 (115)
T 2cpx_A 103 KNKKQRSS 110 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCCCC
Confidence 99886654
No 140
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=134.15 Aligned_cols=82 Identities=17% Similarity=0.217 Sum_probs=76.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEE-EEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLS-AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~-v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
...++|||+|||+++|+++|+++|+.||.|.+ |+|+.+ .+|+++|||||+|.+.++|++|+.. |+..|+||.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 35689999999999999999999999999987 888888 6999999999999999999999997 99999999999999
Q ss_pred ecCCc
Q 013926 425 KRDNK 429 (434)
Q Consensus 425 a~~~~ 429 (434)
+..+.
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87654
No 141
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.77 E-value=9.2e-19 Score=135.40 Aligned_cols=81 Identities=23% Similarity=0.372 Sum_probs=75.2
Q ss_pred CCceEEEcCCCCCC------CHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe-E
Q 013926 347 PGANLFIYHIPQEF------GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK-K 419 (434)
Q Consensus 347 ~~~~v~V~nLp~~~------t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~-~ 419 (434)
..++|||+|||..+ |+++|+++|+.||.|.+|+|+ +.+|+++|||||+|.+.++|.+|+..|||..|.|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 789999999999999999998 35899999999999999999999999999999998 9
Q ss_pred EEEEEecCCc
Q 013926 420 LKVQLKRDNK 429 (434)
Q Consensus 420 i~v~~a~~~~ 429 (434)
|+|.+|....
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999997654
No 142
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-19 Score=139.40 Aligned_cols=85 Identities=24% Similarity=0.359 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
...++|||+|||.++|+++|+++|+.||.|.. .++.++.+|+++|||||+|.+.++|++|++ |||..|.|+.|+|.+|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35689999999999999999999999999988 677777789999999999999999999999 9999999999999999
Q ss_pred cCCcCCC
Q 013926 426 RDNKQNK 432 (434)
Q Consensus 426 ~~~~~~~ 432 (434)
+.++..+
T Consensus 93 ~~~~~~~ 99 (101)
T 1fj7_A 93 KGRDGTR 99 (101)
T ss_dssp SCCCCSS
T ss_pred CCCCCCC
Confidence 9887654
No 143
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=131.04 Aligned_cols=81 Identities=25% Similarity=0.458 Sum_probs=74.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG--GKKLKV 422 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~--g~~i~v 422 (434)
.++.++|||+|||.++++++|+++|+.||.|.++++..+ +|||||+|.+.++|++|++.|||..|. |++|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345689999999999999999999999999999998643 679999999999999999999999999 999999
Q ss_pred EEecCCcCC
Q 013926 423 QLKRDNKQN 431 (434)
Q Consensus 423 ~~a~~~~~~ 431 (434)
.+|+.++..
T Consensus 88 ~~a~~~~~~ 96 (97)
T 1why_A 88 DFAKSGPSS 96 (97)
T ss_dssp EECCCCCCC
T ss_pred EECCCCCCC
Confidence 999988653
No 144
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=9.9e-19 Score=135.20 Aligned_cols=79 Identities=16% Similarity=0.253 Sum_probs=73.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|||+|||+++|++||+++|+.| .|.+|+|+.++ .|+++|||||+|.+.++|++|+ .||+..|+||.|+|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45799999999999999999999999 89999999997 5999999999999999999999 589999999999998886
Q ss_pred CC
Q 013926 427 DN 428 (434)
Q Consensus 427 ~~ 428 (434)
.+
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 145
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=6.7e-19 Score=141.71 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=75.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGR---VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~---v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
..++|||+|||+++|+++|+++|+.||. |.+|+|++++. |+++|||||+|.+.++|++|++ ||+..|+||.|+|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 5689999999999999999999999999 89999999986 9999999999999999999999 99999999999999
Q ss_pred EecCC
Q 013926 424 LKRDN 428 (434)
Q Consensus 424 ~a~~~ 428 (434)
+|..+
T Consensus 121 ~a~~~ 125 (136)
T 2hgl_A 121 KSHRT 125 (136)
T ss_dssp ECCHH
T ss_pred ECChH
Confidence 98654
No 146
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=131.36 Aligned_cols=86 Identities=24% Similarity=0.416 Sum_probs=75.3
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
.+.-...+++|||+|||+++|+++|+++|++||.|.+|.+++++.++.++ ||||+|.+.++|++|++.||+.. +.|
T Consensus 12 ~en~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~-~~g-- 88 (99)
T 4fxv_A 12 HENLYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLR-LQS-- 88 (99)
T ss_dssp ----CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--
T ss_pred cccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCE-ECC--
Confidence 34445667899999999999999999999999999999999999999998 99999999999999999999876 666
Q ss_pred CceeeeccCc
Q 013926 86 SPLQVKYADG 95 (434)
Q Consensus 86 ~~i~~~~~~~ 95 (434)
+.|+|.++.+
T Consensus 89 r~l~V~~AkP 98 (99)
T 4fxv_A 89 KTIKVSYARP 98 (99)
T ss_dssp EECEEEECCB
T ss_pred EEEEEEEeeC
Confidence 7888888764
No 147
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.76 E-value=1.4e-18 Score=134.53 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=71.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
..++|||+|||+++++++|+++|+.|| +|..+.|.. ++++|||||+|.+.++|++|++.|||..|+|++|+|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 568999999999999999999999999 999998853 347899999999999999999999999999999999999
Q ss_pred cCCc
Q 013926 426 RDNK 429 (434)
Q Consensus 426 ~~~~ 429 (434)
+..+
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 8765
No 148
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.3e-18 Score=128.39 Aligned_cols=81 Identities=25% Similarity=0.448 Sum_probs=74.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
....++|||+|||.++++++|+++|+.||.|.++++++ +||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34678999999999999999999999999999999963 3999999999999999999999999999999999
Q ss_pred ecCCcCCCC
Q 013926 425 KRDNKQNKP 433 (434)
Q Consensus 425 a~~~~~~~~ 433 (434)
++.+....|
T Consensus 79 a~~~~~~~~ 87 (92)
T 2dgt_A 79 STSRLRTAS 87 (92)
T ss_dssp SSCCCSCCC
T ss_pred ccCCCCCCC
Confidence 998876554
No 149
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=3.9e-18 Score=129.68 Aligned_cols=77 Identities=25% Similarity=0.475 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 345 GPPGANLFIYHIPQ-EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 345 ~~~~~~v~V~nLp~-~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
.++.++|||+|||. ++++++|+++|+.||.|.++++. +|||||+|.+.++|.+|+..|||..++|++|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44678999999998 99999999999999999999982 6899999999999999999999999999999999
Q ss_pred EecCCc
Q 013926 424 LKRDNK 429 (434)
Q Consensus 424 ~a~~~~ 429 (434)
+++.+.
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 998764
No 150
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.76 E-value=4.1e-18 Score=131.35 Aligned_cols=79 Identities=23% Similarity=0.468 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
.+.++|||+|||.++|+++|+++|+.||.|.+|+|+ +|||||+|.+.++|++|++.||+..|.|+.|+|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 356889999999999999999999999999999986 448999999999999999999999999999999999
Q ss_pred cCCcCCC
Q 013926 426 RDNKQNK 432 (434)
Q Consensus 426 ~~~~~~~ 432 (434)
+.+...+
T Consensus 81 ~~~~~~~ 87 (103)
T 2dgu_A 81 KPPDQKR 87 (103)
T ss_dssp CCCCCCC
T ss_pred CCCcccc
Confidence 9877544
No 151
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.4e-19 Score=139.80 Aligned_cols=82 Identities=16% Similarity=0.257 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
...++|||+|||+++|+++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|.+|+. |||..|+|+.|+|.+|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 356899999999999999999999999999997777777899999999999999999999999 9999999999999998
Q ss_pred cCC
Q 013926 426 RDN 428 (434)
Q Consensus 426 ~~~ 428 (434)
..+
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 764
No 152
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6.8e-18 Score=131.26 Aligned_cols=78 Identities=15% Similarity=0.260 Sum_probs=73.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC-----eEEE
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG-----KKLK 421 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g-----~~i~ 421 (434)
..++|||+|||.++|+++|+++|+.||+|.+|+|+.+ |||||+|.+.++|++|++.|||..|.| +.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 5689999999999999999999999999999999765 799999999999999999999999999 9999
Q ss_pred EEEecCCcCC
Q 013926 422 VQLKRDNKQN 431 (434)
Q Consensus 422 v~~a~~~~~~ 431 (434)
|.+|+.+...
T Consensus 87 V~~a~~~~~~ 96 (108)
T 1x4c_A 87 VKVDGPRSPS 96 (108)
T ss_dssp EEESSCCSCC
T ss_pred EEeCCCCCCC
Confidence 9999987643
No 153
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3e-18 Score=133.64 Aligned_cols=82 Identities=24% Similarity=0.496 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+ +|||||+|.+.++|.+|++.|||..|+|++|+|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 446789999999999999999999999999999999865 67999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 013926 425 KRDNKQNK 432 (434)
Q Consensus 425 a~~~~~~~ 432 (434)
|+.++...
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4g_A 96 GKESPDMT 103 (109)
T ss_dssp CCCCCSSC
T ss_pred cCCCCCCC
Confidence 99987654
No 154
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=2.4e-18 Score=133.49 Aligned_cols=79 Identities=25% Similarity=0.463 Sum_probs=72.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
....++|||+|||.++|+++|+++|+.||.|.++++. +|||||+|.+.++|++|++.|||..|+|++|+|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4467899999999999999999999999999999997 67999999999999999999999999999999999
Q ss_pred ecCCcCC
Q 013926 425 KRDNKQN 431 (434)
Q Consensus 425 a~~~~~~ 431 (434)
++.++..
T Consensus 100 a~~~~~r 106 (108)
T 2jvo_A 100 SKLPAKR 106 (108)
T ss_dssp CSCCC--
T ss_pred ecCCCCC
Confidence 9987653
No 155
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.7e-18 Score=126.18 Aligned_cols=76 Identities=20% Similarity=0.358 Sum_probs=70.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM-NGCQLGGKKLKVQ 423 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l-~g~~l~g~~i~v~ 423 (434)
....++|||+|||.++++++|+++|+.||.|.+++++.+ +|||||+|.+.++|++|++.| ||..+.|++|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 346689999999999999999999999999999999864 689999999999999999999 9999999999999
Q ss_pred Eec
Q 013926 424 LKR 426 (434)
Q Consensus 424 ~a~ 426 (434)
+||
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 986
No 156
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-18 Score=131.18 Aligned_cols=80 Identities=24% Similarity=0.450 Sum_probs=74.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
..+.++|||+|||.++|+++|+++|+.||.|.++++.++ +|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 346789999999999999999999999999999999754 67999999999999999999999999999999999
Q ss_pred ecCCcC
Q 013926 425 KRDNKQ 430 (434)
Q Consensus 425 a~~~~~ 430 (434)
++.+..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 998764
No 157
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=8.3e-18 Score=131.32 Aligned_cols=79 Identities=24% Similarity=0.467 Sum_probs=73.0
Q ss_pred CCceEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 347 PGANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 347 ~~~~v~V~nLp~~-~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
..++|||+|||.+ +++++|+++|+.||.|.+|+| ++|||||+|.+.++|++|++.|||..|+|++|+|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 999999999999999999998 4789999999999999999999999999999999999
Q ss_pred cCCcCCCC
Q 013926 426 RDNKQNKP 433 (434)
Q Consensus 426 ~~~~~~~~ 433 (434)
+.++..++
T Consensus 98 ~~~~~~~~ 105 (110)
T 1wf1_A 98 GEPKPDRS 105 (110)
T ss_dssp CCCCSCCC
T ss_pred CCCCCCCC
Confidence 97665543
No 158
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.5e-18 Score=129.58 Aligned_cols=80 Identities=25% Similarity=0.488 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
.+..++|||+|||.++++++|+++|+.||.|. ++++.+ .++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999999999999999999997 666654 4689999999999999999999999999999999999
Q ss_pred ecCCc
Q 013926 425 KRDNK 429 (434)
Q Consensus 425 a~~~~ 429 (434)
|+.++
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98875
No 159
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=3.8e-18 Score=129.79 Aligned_cols=83 Identities=14% Similarity=0.302 Sum_probs=75.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
....++|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|++|+..|||..|+|++|+|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3466899999999999999999999999988776 24789999999999999999999999999999999999999
Q ss_pred ecCCcCCC
Q 013926 425 KRDNKQNK 432 (434)
Q Consensus 425 a~~~~~~~ 432 (434)
|+.+...+
T Consensus 88 a~~~~~~~ 95 (96)
T 1fjc_A 88 TGEKGGTR 95 (96)
T ss_dssp CSSSCCCC
T ss_pred cCCCCCCC
Confidence 98887543
No 160
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=132.29 Aligned_cols=81 Identities=16% Similarity=0.282 Sum_probs=72.4
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 013926 345 GPPGANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN--GCQLGGKKLK 421 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~-~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~--g~~l~g~~i~ 421 (434)
..++++|||+|||++ +++++|+++|+.||.|.+|+|++ ++|||||+|.+.++|.+|++.|| +..|.||+|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 346789999999998 99999999999999999999974 36899999999999999999886 4569999999
Q ss_pred EEEecCCcCC
Q 013926 422 VQLKRDNKQN 431 (434)
Q Consensus 422 v~~a~~~~~~ 431 (434)
|.+|+.++..
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999887653
No 161
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=7e-19 Score=129.27 Aligned_cols=72 Identities=24% Similarity=0.414 Sum_probs=67.8
Q ss_pred ceEEEcCCCCCC------CHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe-EEE
Q 013926 349 ANLFIYHIPQEF------GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK-KLK 421 (434)
Q Consensus 349 ~~v~V~nLp~~~------t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~-~i~ 421 (434)
++|||+|||..+ ++++|+++|+.||.|.+++++ +.+|+++|||||+|.+.++|++|++.|||..|.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 679999999999999999987 35899999999999999999999999999999999 887
Q ss_pred E
Q 013926 422 V 422 (434)
Q Consensus 422 v 422 (434)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 162
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=127.25 Aligned_cols=79 Identities=19% Similarity=0.352 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAF--GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 422 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~f--G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v 422 (434)
....++|||+|||.++|+++|+++|+.| |.|.++++. +|||||+|.+.++|++|+..|||..|.|++|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3467899999999999999999999999 999999874 569999999999999999999999999999999
Q ss_pred EEecCCcCC
Q 013926 423 QLKRDNKQN 431 (434)
Q Consensus 423 ~~a~~~~~~ 431 (434)
.+|+.+...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2cpd_A 84 TLAKPVDKD 92 (99)
T ss_dssp ECCCCCCCC
T ss_pred EECCCCCCC
Confidence 999987654
No 163
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.75 E-value=1.5e-18 Score=132.30 Aligned_cols=82 Identities=23% Similarity=0.415 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 013926 346 PPGANLFIYHIPQEFGDQELG----NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 421 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~----~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~ 421 (434)
+++++|||+|||.++++++|+ ++|+.||.|.+++++. +|.++|||||+|.+.++|.+|++.|||..++|++|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 467899999999999999999 9999999999998863 577889999999999999999999999999999999
Q ss_pred EEEecCCcC
Q 013926 422 VQLKRDNKQ 430 (434)
Q Consensus 422 v~~a~~~~~ 430 (434)
|.+|+.+..
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999998764
No 164
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=4.7e-19 Score=137.55 Aligned_cols=81 Identities=12% Similarity=0.116 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGR---VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 422 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~---v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v 422 (434)
...++|||+|||+++|+++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|++|+. +|+..|+||.|+|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 46689999999999999999999999998 99999999976 9999999999999999999999 8999999999999
Q ss_pred EEecCC
Q 013926 423 QLKRDN 428 (434)
Q Consensus 423 ~~a~~~ 428 (434)
.++..+
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 998754
No 165
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=132.99 Aligned_cols=79 Identities=22% Similarity=0.448 Sum_probs=73.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 428 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~~~ 428 (434)
++|||+|||.++|+++|+++|+.||.|.+++++.+ ++|||||+|.+.++|++|++.|||..+.|++|+|.+++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 6889999999999999999999999999999999999987
Q ss_pred cCCC
Q 013926 429 KQNK 432 (434)
Q Consensus 429 ~~~~ 432 (434)
+...
T Consensus 76 ~~~~ 79 (101)
T 2hvz_A 76 PRRS 79 (101)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7543
No 166
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8e-18 Score=126.31 Aligned_cols=79 Identities=29% Similarity=0.477 Sum_probs=72.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 345 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
....++|||+|||.++|+++|+++|+.||.|.++++++ |||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999963 3899999999999999999999999999999999
Q ss_pred ecCCcCC
Q 013926 425 KRDNKQN 431 (434)
Q Consensus 425 a~~~~~~ 431 (434)
++.+...
T Consensus 78 a~~~~~~ 84 (90)
T 2dnp_A 78 STKGQKK 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9987654
No 167
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.5e-18 Score=132.12 Aligned_cols=76 Identities=22% Similarity=0.379 Sum_probs=71.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|||+|||.++++++|+++|+.||.|.++++. +++|||||+|.+.++|.+|+..|||..|+|++|+|.+|+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46899999999999999999999999999999997 247899999999999999999999999999999999998
Q ss_pred CC
Q 013926 427 DN 428 (434)
Q Consensus 427 ~~ 428 (434)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 168
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.74 E-value=2.2e-18 Score=132.72 Aligned_cols=82 Identities=28% Similarity=0.457 Sum_probs=76.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|||+|||.++++++|+++|+.||.|.+++|+.++ +|+++|||||+|.+.++|++|++ ++..++|++|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 56899999999999999999999999999999999997 99999999999999999999999 9999999999999998
Q ss_pred CCcCC
Q 013926 427 DNKQN 431 (434)
Q Consensus 427 ~~~~~ 431 (434)
.+...
T Consensus 85 ~~~~~ 89 (102)
T 2xs2_A 85 RKQNL 89 (102)
T ss_dssp ECC--
T ss_pred cCcch
Confidence 76543
No 169
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=4e-18 Score=129.55 Aligned_cols=80 Identities=26% Similarity=0.529 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 345 GPPGANLFIYHIPQ-EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 345 ~~~~~~v~V~nLp~-~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
.++.++|||+|||. ++++++|+++|+.||.|.+++|. +|||||+|.+.++|++|++.|||..+.|++|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44678999999998 99999999999999999999983 6799999999999999999999999999999999
Q ss_pred EecCCcCCC
Q 013926 424 LKRDNKQNK 432 (434)
Q Consensus 424 ~a~~~~~~~ 432 (434)
+++.+..+.
T Consensus 79 ~a~~~~~~~ 87 (96)
T 2kvi_A 79 VSSSNARPQ 87 (96)
T ss_dssp EEECCCC--
T ss_pred EcCcCCCCC
Confidence 998876543
No 170
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=8.7e-19 Score=126.80 Aligned_cols=75 Identities=16% Similarity=0.363 Sum_probs=72.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 350 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 350 ~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
+|||+|||.++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|++|++. ++..+.|++|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999988999999999999999999999995 999999999999886
No 171
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-19 Score=142.87 Aligned_cols=86 Identities=21% Similarity=0.405 Sum_probs=81.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLS--------AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 417 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g 417 (434)
.+.++|||+|||.++++++|+++|+.||.|.+ |+|+.++.+|+++|||||+|.+.++|++|++.|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35688999999999999999999999999999 9999998899999999999999999999999999999999
Q ss_pred eEEEEEEecCCcCC
Q 013926 418 KKLKVQLKRDNKQN 431 (434)
Q Consensus 418 ~~i~v~~a~~~~~~ 431 (434)
++|+|.+|+.++..
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999987654
No 172
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.74 E-value=7.1e-18 Score=130.13 Aligned_cols=80 Identities=21% Similarity=0.404 Sum_probs=72.9
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCC----HHH----HHHHHH--HhCCce
Q 013926 349 ANLFIYHI----PQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYES----PAS----AQNAIA--MMNGCQ 414 (434)
Q Consensus 349 ~~v~V~nL----p~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~----~~~----A~~A~~--~l~g~~ 414 (434)
+.|||+|| |+.+++++|+++|+.||+|.++.++.|+.+|.++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 433 788888 789999
Q ss_pred eCCeEEEEEEecCC
Q 013926 415 LGGKKLKVQLKRDN 428 (434)
Q Consensus 415 l~g~~i~v~~a~~~ 428 (434)
|+|++|+|.+-+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999997654
No 173
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=4.7e-18 Score=150.23 Aligned_cols=82 Identities=26% Similarity=0.371 Sum_probs=77.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFG--RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG--~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
..++|||+|||.++|+++|+++|+.|| .|.+|+|+.++.+|+++|||||+|.+.++|++||+.||+..|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 013926 425 KRDN 428 (434)
Q Consensus 425 a~~~ 428 (434)
|+.+
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8653
No 174
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.1e-18 Score=127.81 Aligned_cols=79 Identities=20% Similarity=0.309 Sum_probs=70.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCC-ceeCCeEEEEEE
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGR-VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG-CQLGGKKLKVQL 424 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~-v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~l~g~~i~v~~ 424 (434)
..++|||+|||.++|+++|+++|+.||. |..+.+. ++|||||+|.+.++|++|++.||| ..|+|++|+|.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 5688999999999999999999999999 5555552 478999999999999999999999 999999999999
Q ss_pred ecCCcCCC
Q 013926 425 KRDNKQNK 432 (434)
Q Consensus 425 a~~~~~~~ 432 (434)
|+.+....
T Consensus 80 a~~~~~~~ 87 (93)
T 2cqh_A 80 SVSKKLRS 87 (93)
T ss_dssp CCCCCCCC
T ss_pred ccCccccC
Confidence 99876543
No 175
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.6e-18 Score=134.86 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCe----EEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRV----LSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 421 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v----~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~ 421 (434)
...++|||+|||+++|++||+++|+.||.| .+|+|+.+ .+|+++|||||+|.+.++|++|++. |+..|+||.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 456899999999999999999999999975 68999998 4899999999999999999999996 99999999999
Q ss_pred EEEecCC
Q 013926 422 VQLKRDN 428 (434)
Q Consensus 422 v~~a~~~ 428 (434)
|..+..+
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988643
No 176
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4e-17 Score=124.27 Aligned_cols=79 Identities=29% Similarity=0.486 Sum_probs=72.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
...++|||+|| ++|+++|+++|+.||.|.+|+|. +++|||||+|.+.++|++|+..|||..|.|++|+|.+|
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35689999996 89999999999999999999984 35789999999999999999999999999999999999
Q ss_pred cCCcCCC
Q 013926 426 RDNKQNK 432 (434)
Q Consensus 426 ~~~~~~~ 432 (434)
+.+....
T Consensus 85 ~~~~~~~ 91 (97)
T 1x5p_A 85 RKQPMLD 91 (97)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9887544
No 177
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=121.86 Aligned_cols=74 Identities=24% Similarity=0.439 Sum_probs=66.6
Q ss_pred CCce-EEEcCCCCCCCHHH----HHHHhhcc-CCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 013926 347 PGAN-LFIYHIPQEFGDQE----LGNAFQAF-GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 420 (434)
Q Consensus 347 ~~~~-v~V~nLp~~~t~~~----L~~~F~~f-G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i 420 (434)
++.| |||+|||+.+++++ |+++|+.| |+|.+| +| |+|||.|.+.++|++|++.|||..|.||+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4455 99999999999887 66899999 599998 33 899999999999999999999999999999
Q ss_pred EEEEecCCcC
Q 013926 421 KVQLKRDNKQ 430 (434)
Q Consensus 421 ~v~~a~~~~~ 430 (434)
+|++|+.+..
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999998764
No 178
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=8.8e-18 Score=132.35 Aligned_cols=80 Identities=21% Similarity=0.350 Sum_probs=74.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
.+++|||+|||.++|+++|+++|+.||.|.+++|+.+ +.++|||||+|.+.++|.+|+..|||..++|+.|+|.+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 5689999999999999999999999999999999865 4569999999999999999999999999999999999998
Q ss_pred CCc
Q 013926 427 DNK 429 (434)
Q Consensus 427 ~~~ 429 (434)
.+.
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 654
No 179
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=1.1e-17 Score=141.60 Aligned_cols=85 Identities=26% Similarity=0.383 Sum_probs=80.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
..+++|||+|||.++++++|+++|+.||.|.+|.|+.++ +|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.+|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 356899999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCCcCC
Q 013926 426 RDNKQN 431 (434)
Q Consensus 426 ~~~~~~ 431 (434)
......
T Consensus 165 ~~~~~~ 170 (177)
T 2f3j_A 165 ASQIDL 170 (177)
T ss_dssp SSGGGG
T ss_pred cCCCCC
Confidence 876543
No 180
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=129.18 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=73.7
Q ss_pred CCceEEE--cCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCcee-----CCeE
Q 013926 347 PGANLFI--YHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL-----GGKK 419 (434)
Q Consensus 347 ~~~~v~V--~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l-----~g~~ 419 (434)
+.++||| +||+.++++++|+++|++||.|.+|.|+. .+|||||+|.+.++|++|++.|||..| .|+.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 5678999 66999999999999999999999998853 268999999999999999999999998 7899
Q ss_pred EEEEEecCCcCCCC
Q 013926 420 LKVQLKRDNKQNKP 433 (434)
Q Consensus 420 i~v~~a~~~~~~~~ 433 (434)
|.|.+++..+..+|
T Consensus 98 l~v~~a~~~p~~~~ 111 (114)
T 2cq2_A 98 LYLNFVEKVQWSGP 111 (114)
T ss_dssp CEEEEESCCCCSSC
T ss_pred EEEEecccCcccCC
Confidence 99999998887766
No 181
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=8.8e-18 Score=131.08 Aligned_cols=77 Identities=13% Similarity=0.145 Sum_probs=71.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|||+|||.++++++|+++|+.||.|.+|.|+. ++|||||+|.+.++|++|++.|||..|.|++|+|.||+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999998864 46799999999999999999999999999999999998
Q ss_pred CCc
Q 013926 427 DNK 429 (434)
Q Consensus 427 ~~~ 429 (434)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 754
No 182
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.72 E-value=4.9e-17 Score=128.34 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=72.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEEe
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCF-GFVSYESPASAQNAIAMMNGCQLGG--KKLKVQLK 425 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~l~g--~~i~v~~a 425 (434)
..|||+||++.+|+++|+++|++||.|.+|+|.... +|+ |||+|.+.++|++|++.|||..|.| ++|+|.||
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 568899999999999999999999999999887642 577 9999999999999999999999998 99999999
Q ss_pred cCCcCCCC
Q 013926 426 RDNKQNKP 433 (434)
Q Consensus 426 ~~~~~~~~ 433 (434)
+.+.-.-+
T Consensus 104 k~~~l~v~ 111 (130)
T 3zzy_A 104 KLTSLNVK 111 (130)
T ss_dssp SCSSCCCC
T ss_pred CCCceeEE
Confidence 98765543
No 183
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=4.4e-17 Score=134.79 Aligned_cols=116 Identities=21% Similarity=0.370 Sum_probs=97.9
Q ss_pred eEEEEeCCHHHHHHHHHHh-ccCccCCCCCCceeeeccCcc-----------------cccCCCeEEEeCCCCCCcHHHH
Q 013926 57 CCFVICPSRQEADKAVNAC-HNKKTLPGASSPLQVKYADGE-----------------LERLEHKLFIGMLPKNVSEAEV 118 (434)
Q Consensus 57 ~afV~f~~~~~A~~al~~~-~~~~~~~g~~~~i~~~~~~~~-----------------~~~~~~~v~v~nlp~~~~~~~l 118 (434)
+++|+|.+.++|++|++.+ |+.. +.| .+.+.++... .....++|||+|||+++++++|
T Consensus 15 ~~~ve~~~~~~A~~a~~~~~ng~~-~~G---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 90 (150)
T 2i2y_A 15 ETTTEAVDAATAEKVFKQYANDNG-VDG---EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTEL 90 (150)
T ss_dssp EEEEECSSHHHHTTTHHHHHHHHT-CCC---EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHH
T ss_pred cceeeecCHHHHHHHHHHHhcCCC-CCC---ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 8999999999999999999 7765 555 5666555431 1223689999999999999999
Q ss_pred HHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeeccCh
Q 013926 119 SALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 183 (434)
Q Consensus 119 ~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~~~ 183 (434)
+++|+.||.|..|.++.+ ++|||||+|.+.++|.+|++.|++.. ++|+ .|.|.++.++
T Consensus 91 ~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~v~~a~~~ 148 (150)
T 2i2y_A 91 ERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRT-LCGC--RVRVELSNGE 148 (150)
T ss_dssp HHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSC-SSSS--CCEEEECCCC
T ss_pred HHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCE-ECCe--EEEEEEcCCC
Confidence 999999999999999876 58899999999999999999999976 6777 5788888654
No 184
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.72 E-value=5e-18 Score=127.40 Aligned_cols=83 Identities=19% Similarity=0.343 Sum_probs=74.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccC-ceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeee
Q 013926 14 RVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 91 (434)
Q Consensus 14 ~~~l~v~nLp~~~te~~l~~~f~~~g-~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~ 91 (434)
+++|||+|||+++||+||+++|+.|| .|.+|++++++.++.++ ||||+|.+.++|++|++.+++...+.| +.|+|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g--r~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG--QKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT--EEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC--EEEEEE
Confidence 57899999999999999999999999 89999999999999988 999999999999999998866555777 888888
Q ss_pred ccCcccc
Q 013926 92 YADGELE 98 (434)
Q Consensus 92 ~~~~~~~ 98 (434)
++.++..
T Consensus 79 ~a~~~~~ 85 (91)
T 2lxi_A 79 YSDPKPK 85 (91)
T ss_dssp CCCSCCC
T ss_pred EcCCCCC
Confidence 8876543
No 185
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=125.12 Aligned_cols=80 Identities=30% Similarity=0.321 Sum_probs=72.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEE-EEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSA-KVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v-~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
..++|||+|||.++++++|+++|+.||.|.++ .|+.++.+| .|||+|.+.++|++|+..|||..|+|++|+|.+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46889999999999999999999999999999 487776443 4999999999999999999999999999999999
Q ss_pred cCCcC
Q 013926 426 RDNKQ 430 (434)
Q Consensus 426 ~~~~~ 430 (434)
+.+..
T Consensus 90 ~~~~~ 94 (96)
T 2e44_A 90 PDEMA 94 (96)
T ss_dssp CCCCS
T ss_pred Ccccc
Confidence 98743
No 186
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=4.6e-17 Score=133.44 Aligned_cols=80 Identities=20% Similarity=0.310 Sum_probs=72.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEEe
Q 013926 348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG--KKLKVQLK 425 (434)
Q Consensus 348 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g--~~i~v~~a 425 (434)
..+|||+||++.+|+++|+++|++||+|.+|+|...+ ++|||||+|.+.++|++|++.|||..|.| ++|+|.||
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 3568999999999999999999999999999986442 57899999999999999999999999966 99999999
Q ss_pred cCCcCC
Q 013926 426 RDNKQN 431 (434)
Q Consensus 426 ~~~~~~ 431 (434)
+.+...
T Consensus 122 k~~~l~ 127 (164)
T 1sjr_A 122 KLTSLN 127 (164)
T ss_dssp SSSSCC
T ss_pred cCCccc
Confidence 987543
No 187
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=123.15 Aligned_cols=80 Identities=25% Similarity=0.459 Sum_probs=71.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|||+|||.++|+++|+++|+.||.|.+| +.++.+|. ||||+|.+.++|++|+. |||..|+|+.|+|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45789999999999999999999999999987 56655665 99999999999999999 99999999999999998
Q ss_pred CCcCCC
Q 013926 427 DNKQNK 432 (434)
Q Consensus 427 ~~~~~~ 432 (434)
.++...
T Consensus 81 ~~~~~~ 86 (94)
T 2e5g_A 81 QKEFQS 86 (94)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 776543
No 188
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=2.9e-17 Score=122.59 Aligned_cols=76 Identities=26% Similarity=0.360 Sum_probs=70.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|||+|||.++++++|+++|+.| .|.++++. +++|||||+|.+.++|++|++.|||..++|++|+|.+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999984 468999999999999999999999999999999999997
Q ss_pred CCc
Q 013926 427 DNK 429 (434)
Q Consensus 427 ~~~ 429 (434)
.+.
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 653
No 189
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=2.7e-18 Score=138.58 Aligned_cols=81 Identities=11% Similarity=0.192 Sum_probs=75.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|||+|||+++|++||+++|+.|| |++|+|+.++. |+++|||||+|.+.++|++|+ .+|+..|+||.|+|.++.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 557899999999999999999999999 77999999975 999999999999999999999 689999999999999988
Q ss_pred CCcC
Q 013926 427 DNKQ 430 (434)
Q Consensus 427 ~~~~ 430 (434)
.+..
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7654
No 190
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.71 E-value=8.1e-18 Score=138.02 Aligned_cols=81 Identities=21% Similarity=0.388 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEE--------EEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSA--------KVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 417 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v--------~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g 417 (434)
.++++|||+|||.++|+++|+++|+.||.|.++ ++. .+|+++|||||.|.+.++|.+|+..|||..|.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 356899999999999999999999999998774 332 378899999999999999999999999999999
Q ss_pred eEEEEEEecCCc
Q 013926 418 KKLKVQLKRDNK 429 (434)
Q Consensus 418 ~~i~v~~a~~~~ 429 (434)
+.|+|.+|+...
T Consensus 120 ~~l~V~~a~~~~ 131 (143)
T 3egn_A 120 KPMVVQFARSAR 131 (143)
T ss_dssp EECEEEECCCSC
T ss_pred cEEEEEECCCCC
Confidence 999999998754
No 191
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.71 E-value=7.3e-18 Score=133.33 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=72.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeE--EEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVL--SAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 424 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~--~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~ 424 (434)
..++|||+|||+++|+++|+++|+.| .|+ +|+|+.++. |+++|||||+|.+.++|++|++. ++..|+||.|+|..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 56789999999999999999999999 677 999999975 99999999999999999999995 88999999999998
Q ss_pred ecCC
Q 013926 425 KRDN 428 (434)
Q Consensus 425 a~~~ 428 (434)
+..+
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 192
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.70 E-value=8.8e-17 Score=123.41 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCC--C---CCHHHHHHHhhccCCeEEEEEEecCCC-CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 013926 346 PPGANLFIYHIPQ--E---FGDQELGNAFQAFGRVLSAKVFVDKAT-GVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 419 (434)
Q Consensus 346 ~~~~~v~V~nLp~--~---~t~~~L~~~F~~fG~v~~v~i~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~ 419 (434)
.++++|+|+||.. + -++++|++.|++||.|.+|+|+.++.+ ++++|+|||.|.+.++|.+|++.|||+.+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3668999999952 2 368999999999999999999988653 688999999999999999999999999999999
Q ss_pred EEEEEecC
Q 013926 420 LKVQLKRD 427 (434)
Q Consensus 420 i~v~~a~~ 427 (434)
|+|.+++.
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 193
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=5.2e-17 Score=127.91 Aligned_cols=106 Identities=16% Similarity=0.281 Sum_probs=91.3
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCcee
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 89 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~ 89 (434)
...++++|||+|||+++++++|+++|+.||.|.+|.+..+..+ .+||||+|.+.++|.+|++.||+.. +.| +.+.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~ 78 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET--RGTAYVVYEDIFDAKNAVDHLSGFN-VSN--RYLV 78 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTT--TTCEEEEESSHHHHHHHHHHHTTCB-SSS--CBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC--CcEEEEEECCHHHHHHHHHHcCCCE-ECC--eEEE
Confidence 4567899999999999999999999999999999999876443 2399999999999999999999876 566 7888
Q ss_pred eeccCcccccCCCeEEEeCCCCCCcHHHHHHhhhccCC
Q 013926 90 VKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT 127 (434)
Q Consensus 90 ~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~ 127 (434)
|.++...... ++++...++++|.++|+.||.
T Consensus 79 v~~a~~~~~~-------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 79 VLYYNANRAF-------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp EEECCHHHHT-------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EEEecCChhh-------hhhhHhHhHHHHHHHHHHhCC
Confidence 8888755443 577888899999999999984
No 194
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.70 E-value=8.6e-17 Score=124.69 Aligned_cols=93 Identities=38% Similarity=0.660 Sum_probs=83.0
Q ss_pred ccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCC
Q 013926 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGA 84 (434)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~ 84 (434)
.....+.+.++|||+|||+++++++|+++|+.||.|.+|.++.++.++.++ ||||+|.+.++|++|++.||+..++.+.
T Consensus 5 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 5 SSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 345667788999999999999999999999999999999999999888888 9999999999999999999998877666
Q ss_pred CCceeeeccCcccc
Q 013926 85 SSPLQVKYADGELE 98 (434)
Q Consensus 85 ~~~i~~~~~~~~~~ 98 (434)
.+.|+|.++.....
T Consensus 85 g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 85 NRPIQVKPADSESR 98 (106)
T ss_dssp SSCCEEEECCCCSC
T ss_pred CceEEEEECCcccc
Confidence 68899988875543
No 195
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.70 E-value=6.9e-17 Score=125.49 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=74.6
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCcee
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 89 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~ 89 (434)
+.+.++|||+|||+++++++|+++|++||.|.+|.++.++.++.++ ||||+|.+.++|++|++.||+.. +.| +.|+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~-~~g--r~i~ 79 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTS-VMG--NIIH 79 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCE-ECC--eEEE
Confidence 4678999999999999999999999999999999999999999999 99999999999999999999986 566 6777
Q ss_pred eeccCc
Q 013926 90 VKYADG 95 (434)
Q Consensus 90 ~~~~~~ 95 (434)
|.++..
T Consensus 80 V~~a~~ 85 (110)
T 3s8s_A 80 AQLDIK 85 (110)
T ss_dssp EEECST
T ss_pred EEECCC
Confidence 776653
No 196
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.69 E-value=2.2e-16 Score=122.13 Aligned_cols=91 Identities=37% Similarity=0.655 Sum_probs=79.6
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
.+....+.++|||+|||+++++++|+++|+.||.|.+|.+..++ ++.++ ||||+|.+.++|++|++.||+..+..+..
T Consensus 8 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~ 86 (105)
T 2dnh_A 8 SESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS 86 (105)
T ss_dssp CCCSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCS
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCC
Confidence 34455678999999999999999999999999999999999998 57777 99999999999999999999988666666
Q ss_pred CceeeeccCcccc
Q 013926 86 SPLQVKYADGELE 98 (434)
Q Consensus 86 ~~i~~~~~~~~~~ 98 (434)
+.|.|.++.....
T Consensus 87 ~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 87 SSLVVKFADTDKE 99 (105)
T ss_dssp SCCEEEESCSSCC
T ss_pred ccEEEEECccCcc
Confidence 7888888876544
No 197
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.69 E-value=7.4e-17 Score=120.36 Aligned_cols=76 Identities=18% Similarity=0.379 Sum_probs=63.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCce--eCCeEEEEE
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ--LGGKKLKVQ 423 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~--l~g~~i~v~ 423 (434)
++.++|||+|||.++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++ |++.. +.|++|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 36689999999999999999999999999999999764 68999999999999983 45555 469999999
Q ss_pred EecCCcC
Q 013926 424 LKRDNKQ 430 (434)
Q Consensus 424 ~a~~~~~ 430 (434)
+|+.++.
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9998764
No 198
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=7e-16 Score=121.34 Aligned_cols=76 Identities=24% Similarity=0.263 Sum_probs=68.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEEe
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCF-GFVSYESPASAQNAIAMMNGCQLGG--KKLKVQLK 425 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~l~g--~~i~v~~a 425 (434)
..|||+||++.+|+++|+++|+.||.|.+|+|.. + .|| |||+|.+.++|..|++.|||..|.| +.|+|.+|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 3467999999999999999999999999999964 2 276 9999999999999999999999988 69999999
Q ss_pred cCCcC
Q 013926 426 RDNKQ 430 (434)
Q Consensus 426 ~~~~~ 430 (434)
+.+..
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 98754
No 199
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.68 E-value=4.6e-17 Score=122.53 Aligned_cols=84 Identities=19% Similarity=0.377 Sum_probs=74.0
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCc--eeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCc---cCCC
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFAL--VDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKK---TLPG 83 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~--v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~---~~~g 83 (434)
....-.+|||+|||+++|+++|+++|++||. |.+|++++|+.++.++ ||||+|.+.++|++|++.||+.. .+.|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3456689999999999999999999999995 6789999999999998 99999999999999999999864 3566
Q ss_pred CCCceeeeccCc
Q 013926 84 ASSPLQVKYADG 95 (434)
Q Consensus 84 ~~~~i~~~~~~~ 95 (434)
+.|.|.+++.
T Consensus 85 --r~i~V~~Aks 94 (95)
T 2lkz_A 85 --KTIGVDFAKS 94 (95)
T ss_dssp --EEEEEEECCC
T ss_pred --EEEEEEEccC
Confidence 7888888763
No 200
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=119.22 Aligned_cols=84 Identities=19% Similarity=0.292 Sum_probs=71.0
Q ss_pred ccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCcc-CCCC
Q 013926 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKT-LPGA 84 (434)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~-~~g~ 84 (434)
++.....++++|||+|||+++|+++|+++|++||.|.++.+++.++ +|||+|.+.++|++|++.+++..+ +.|
T Consensus 13 ~~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg-----~AFVef~~~~~A~~Av~~ln~~~~~i~G- 86 (100)
T 3r27_A 13 DDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKR-----QALVEFEDVLGACNAVNYAADNQIYIAG- 86 (100)
T ss_dssp ----CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTT-----EEEEEESSHHHHHHHHHHHHHSCEEETT-
T ss_pred cccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCC-----EEEEEECCHHHHHHHHHHhcCCCceeCC-
Confidence 4566677899999999999999999999999999999999987543 999999999999999999998753 556
Q ss_pred CCceeeeccCcc
Q 013926 85 SSPLQVKYADGE 96 (434)
Q Consensus 85 ~~~i~~~~~~~~ 96 (434)
+++.|.+++.+
T Consensus 87 -r~i~V~~S~~k 97 (100)
T 3r27_A 87 -HPAFVNYSTSQ 97 (100)
T ss_dssp -EEEEEEECSCS
T ss_pred -cEEEEEecccc
Confidence 88888887643
No 201
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.67 E-value=2.2e-16 Score=152.57 Aligned_cols=84 Identities=18% Similarity=0.424 Sum_probs=80.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
+.++|||+|||..+|+++|.++|+.||.|..|.|+.++.+|+++|||||+|.+.++|.+||..|||..|.|+.|+|.+|+
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 56799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCcC
Q 013926 427 DNKQ 430 (434)
Q Consensus 427 ~~~~ 430 (434)
.+..
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 7543
No 202
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=122.03 Aligned_cols=90 Identities=20% Similarity=0.353 Sum_probs=80.3
Q ss_pred cccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
...+.+..+.++|||+|||+++++++|+++|+.||.|..|.+..++.++.++ ||||+|.+.++|++|++.||+.. +.|
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g 84 (103)
T 2cq0_A 6 SGPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG-YDH 84 (103)
T ss_dssp CCSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCE-ETT
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCe-eCC
Confidence 3456678889999999999999999999999999999999999999888888 99999999999999999999876 566
Q ss_pred CCCceeeeccCccc
Q 013926 84 ASSPLQVKYADGEL 97 (434)
Q Consensus 84 ~~~~i~~~~~~~~~ 97 (434)
+.|+|.++....
T Consensus 85 --~~l~v~~a~~~~ 96 (103)
T 2cq0_A 85 --LILNVEWAKPST 96 (103)
T ss_dssp --EECEEEESSCCC
T ss_pred --cEEEEEECCCCC
Confidence 778888876544
No 203
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=120.45 Aligned_cols=82 Identities=18% Similarity=0.340 Sum_probs=70.5
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccC-ccCCCCCCc
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNK-KTLPGASSP 87 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~-~~~~g~~~~ 87 (434)
-...+.++|||+|||+++||+||+++|++||.|.+|.+++++. ||||+|.+.++|++|++.+++. ..+.| +.
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kG-----faFVeF~~~~~A~~Ai~~l~~~~~~l~G--r~ 83 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKN-----QAFIEMNTEEAANTMVNYYTSVTPVLRG--QP 83 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTT-----EEEEEESSHHHHHHHHHHHTTSCCEETT--EE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCC-----EEEEEECCHHHHHHHHHHhccCCceECC--EE
Confidence 3567889999999999999999999999999999999998643 9999999999999999988753 44666 78
Q ss_pred eeeeccCccc
Q 013926 88 LQVKYADGEL 97 (434)
Q Consensus 88 i~~~~~~~~~ 97 (434)
|+|.++..+.
T Consensus 84 l~V~~A~~~~ 93 (105)
T 1sjq_A 84 IYIQFSNHKE 93 (105)
T ss_dssp CCBCCCSSSS
T ss_pred EEEEEcCCCC
Confidence 8888886543
No 204
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.1e-16 Score=118.91 Aligned_cols=88 Identities=23% Similarity=0.322 Sum_probs=78.6
Q ss_pred ccccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCC
Q 013926 4 SKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLP 82 (434)
Q Consensus 4 ~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~ 82 (434)
....+....+.++|||+|||+++++++|+++|+.||.|..|.+..++.++.++ ||||+|.+.++|++|++.||+.. +.
T Consensus 5 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~ 83 (95)
T 2cqc_A 5 SSGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME-LD 83 (95)
T ss_dssp CCCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEE-ET
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCE-EC
Confidence 34556777889999999999999999999999999999999999999888888 99999999999999999999876 55
Q ss_pred CCCCceeeeccC
Q 013926 83 GASSPLQVKYAD 94 (434)
Q Consensus 83 g~~~~i~~~~~~ 94 (434)
| +.|.|.+++
T Consensus 84 g--~~l~v~~a~ 93 (95)
T 2cqc_A 84 G--RRIRVSGPS 93 (95)
T ss_dssp T--EEEEEECCS
T ss_pred C--EEEEEEecC
Confidence 6 778887765
No 205
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=117.03 Aligned_cols=81 Identities=23% Similarity=0.423 Sum_probs=72.1
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
.+.++|||+|||+++++++|+++|+.||.|.+|.+..++.++.++ ||||+|.+.++|++|++.||+.. +.| +.++|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~v 80 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGG--RQIRT 80 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--eEEEE
Confidence 567899999999999999999999999999999999998888888 99999999999999999999876 666 77787
Q ss_pred eccCc
Q 013926 91 KYADG 95 (434)
Q Consensus 91 ~~~~~ 95 (434)
.++..
T Consensus 81 ~~a~~ 85 (87)
T 3bs9_A 81 NWATR 85 (87)
T ss_dssp EEEC-
T ss_pred EecCC
Confidence 77664
No 206
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.3e-16 Score=120.17 Aligned_cols=86 Identities=23% Similarity=0.325 Sum_probs=76.2
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
.....++++|||+|||+++++++|+++|+.||.|.+|.+..++.++.++ ||||+|.+.++|++|++.||+.. +.| +
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 93 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD-LMG--Q 93 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCB-SSS--S
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCE-ECC--c
Confidence 3345667899999999999999999999999999999999999988888 99999999999999999999875 666 7
Q ss_pred ceeeeccCcc
Q 013926 87 PLQVKYADGE 96 (434)
Q Consensus 87 ~i~~~~~~~~ 96 (434)
.|.|.++..+
T Consensus 94 ~l~V~~a~~~ 103 (106)
T 1p27_B 94 PISVDWCFVR 103 (106)
T ss_dssp BCEEEESEES
T ss_pred EEEEEeecCC
Confidence 7888777644
No 207
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=9.9e-17 Score=126.00 Aligned_cols=76 Identities=16% Similarity=0.282 Sum_probs=66.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeE-----EE
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK-----LK 421 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~-----i~ 421 (434)
..++|||+|||.++++++|+++|+.||+|.+|.|+.+ |||||+|.+.++|++|++.|||..|+|++ |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4578999999999999999999999999999999754 79999999999999999999999999998 77
Q ss_pred EEEecCCc
Q 013926 422 VQLKRDNK 429 (434)
Q Consensus 422 v~~a~~~~ 429 (434)
|..++.+.
T Consensus 88 v~~~~~~~ 95 (115)
T 3beg_B 88 VKVDGPRS 95 (115)
T ss_dssp EEECC---
T ss_pred eccCCCCC
Confidence 87776554
No 208
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=6.7e-16 Score=117.05 Aligned_cols=83 Identities=25% Similarity=0.437 Sum_probs=75.3
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
.+.++|||+|||+++++++|+++|+.||.|.+|.+..++.++.++ ||||+|.+.++|++|++.||+.. +.| +.|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V 79 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFE-LAG--RPMRV 79 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCC-SSS--SCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCe-eCC--cEEEE
Confidence 578999999999999999999999999999999999999888888 99999999999999999999876 666 77888
Q ss_pred eccCccc
Q 013926 91 KYADGEL 97 (434)
Q Consensus 91 ~~~~~~~ 97 (434)
.++..+.
T Consensus 80 ~~a~~~~ 86 (95)
T 2dnz_A 80 GHVTERL 86 (95)
T ss_dssp EESSCCC
T ss_pred EEccccc
Confidence 8776544
No 209
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.66 E-value=4.2e-16 Score=122.64 Aligned_cols=88 Identities=24% Similarity=0.351 Sum_probs=78.3
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
......+.++|||+|||+++++++|+++|+.||.|.+|.++.++.++.++ ||||+|.+.++|++||+.||+.. +.|
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g-- 94 (115)
T 2cpz_A 18 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQ-IGM-- 94 (115)
T ss_dssp CCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE-ETT--
T ss_pred cCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCE-ECC--
Confidence 34556678999999999999999999999999999999999999888888 99999999999999999999876 566
Q ss_pred CceeeeccCccc
Q 013926 86 SPLQVKYADGEL 97 (434)
Q Consensus 86 ~~i~~~~~~~~~ 97 (434)
+.|+|.++..+.
T Consensus 95 ~~l~V~~a~~~~ 106 (115)
T 2cpz_A 95 KRLKVQLKRSKN 106 (115)
T ss_dssp EECEEECCCCSC
T ss_pred EEEEEEEcCCCC
Confidence 778888876544
No 210
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=2e-16 Score=125.15 Aligned_cols=79 Identities=29% Similarity=0.486 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 013926 346 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 425 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a 425 (434)
...++|||+|| ++|+++|+++|+.||.|.+|++. .++|||||+|.+.++|++|+..|||..|.|++|+|.+|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 35689999996 69999999999999999999985 35789999999999999999999999999999999999
Q ss_pred cCCcCCC
Q 013926 426 RDNKQNK 432 (434)
Q Consensus 426 ~~~~~~~ 432 (434)
+.+....
T Consensus 109 ~~~~~~~ 115 (121)
T 2bz2_A 109 RKQPMLD 115 (121)
T ss_dssp CSSCC--
T ss_pred CCCCCCC
Confidence 9887544
No 211
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.7e-16 Score=119.32 Aligned_cols=90 Identities=23% Similarity=0.361 Sum_probs=78.6
Q ss_pred ccccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCC
Q 013926 4 SKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLP 82 (434)
Q Consensus 4 ~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~ 82 (434)
...++....+.++|||+|||+++|+++|+++|+.||.|.+|.+..+ ++.++ ||||+|.+.++|++|++.||+.. +.
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~ 81 (103)
T 2d9p_A 5 SSGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI-VA 81 (103)
T ss_dssp CCCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCB-SS
T ss_pred CCCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCE-eC
Confidence 3456677789999999999999999999999999999999999998 66777 99999999999999999999876 56
Q ss_pred CCCCceeeeccCcccc
Q 013926 83 GASSPLQVKYADGELE 98 (434)
Q Consensus 83 g~~~~i~~~~~~~~~~ 98 (434)
| +.|.|.++.....
T Consensus 82 g--~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 82 T--KPLYVALAQRKEE 95 (103)
T ss_dssp S--SBCEEEECSSCCC
T ss_pred C--cEEEEEEeccccc
Confidence 6 7888888765543
No 212
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.7e-16 Score=118.87 Aligned_cols=88 Identities=26% Similarity=0.410 Sum_probs=76.6
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCcee-EEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVD-EVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~-~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
.....+.++|||+|||+++++++|+++|++||.|. +|.++.++.++.++ ||||+|.+.++|++|++.||+.. +.|+.
T Consensus 3 s~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~ 81 (99)
T 2div_A 3 SGSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP-LPGAT 81 (99)
T ss_dssp CCCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSE-ESSCS
T ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCc-cCCCC
Confidence 44567889999999999999999999999999999 99999999888888 99999999999999999999876 66643
Q ss_pred Cc--eeeeccCcc
Q 013926 86 SP--LQVKYADGE 96 (434)
Q Consensus 86 ~~--i~~~~~~~~ 96 (434)
.. +++.++...
T Consensus 82 ~~~~l~v~~a~~~ 94 (99)
T 2div_A 82 PAKRFKLNYATYS 94 (99)
T ss_dssp SCEECCEEETTCC
T ss_pred cceeEEEeecCCC
Confidence 22 777777644
No 213
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=7.1e-16 Score=117.83 Aligned_cols=85 Identities=33% Similarity=0.504 Sum_probs=75.4
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
....+.++|||+|||+++++++|+++|+.||.|.+|.++.++.++.++ ||||+|.+.++|++|++ +|+.. +.| +.
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~-~~g--~~ 80 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHD-IMG--KK 80 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCB-SSS--CB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCE-ECC--eE
Confidence 455788999999999999999999999999999999999999888888 99999999999999998 87765 666 77
Q ss_pred eeeeccCccc
Q 013926 88 LQVKYADGEL 97 (434)
Q Consensus 88 i~~~~~~~~~ 97 (434)
|.|.++....
T Consensus 81 l~V~~a~~~~ 90 (99)
T 2dgs_A 81 VEVKRAEPRD 90 (99)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCc
Confidence 8887776544
No 214
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=6.1e-16 Score=121.74 Aligned_cols=90 Identities=22% Similarity=0.409 Sum_probs=79.9
Q ss_pred cccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
.....+..+.++|||+|||+++++++|+++|+.||.|..|.++.++.++.++ ||||+|.+.++|++||+.||+.. +.|
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g 84 (115)
T 2dgo_A 6 SGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGG 84 (115)
T ss_dssp CSSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCE-ETT
T ss_pred CcCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC
Confidence 3456667889999999999999999999999999999999999998888888 99999999999999999999876 666
Q ss_pred CCCceeeeccCccc
Q 013926 84 ASSPLQVKYADGEL 97 (434)
Q Consensus 84 ~~~~i~~~~~~~~~ 97 (434)
+.|.|.++....
T Consensus 85 --~~l~V~~a~~~~ 96 (115)
T 2dgo_A 85 --RQIRTNWATRKP 96 (115)
T ss_dssp --EECEEEESSCCC
T ss_pred --EEEEEEEccCCC
Confidence 778888876554
No 215
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.8e-16 Score=119.73 Aligned_cols=90 Identities=23% Similarity=0.331 Sum_probs=79.6
Q ss_pred ccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCC
Q 013926 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGA 84 (434)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~ 84 (434)
....+..+.++|||+|||+++++++|+++|+.||.|..|.+..++.++.++ ||||+|.+.++|++|++.||+.. +.|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g- 84 (105)
T 1x5u_A 7 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIK-LYG- 84 (105)
T ss_dssp CCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCB-CSS-
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCe-ECC-
Confidence 345566788999999999999999999999999999999999999888888 99999999999999999999876 666
Q ss_pred CCceeeeccCcccc
Q 013926 85 SSPLQVKYADGELE 98 (434)
Q Consensus 85 ~~~i~~~~~~~~~~ 98 (434)
+.|+|.++.....
T Consensus 85 -~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 85 -KPIRVNKASAHNK 97 (105)
T ss_dssp -CBCEEEETTTTSC
T ss_pred -eEEEEEECCCCCc
Confidence 7888888765543
No 216
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=125.58 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=67.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCC---CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT---GVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
..++|||+|||.++|+++|+++|+.||.|. +.++.++.+ |+++|||||+|.+.++|++|++.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 568899999999999999999999999999 888887766 7999999999999999999999984 3666666665
Q ss_pred Eec
Q 013926 424 LKR 426 (434)
Q Consensus 424 ~a~ 426 (434)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 544
No 217
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.4e-16 Score=119.21 Aligned_cols=88 Identities=27% Similarity=0.410 Sum_probs=77.0
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
......+.++|||+|||+++++++|+++|+.||.|..|.++.++.++.++ ||||+|.+.++|++|++.||+.. +.|
T Consensus 5 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g-- 81 (102)
T 1x5s_A 5 SSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS-VDG-- 81 (102)
T ss_dssp CCCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCC-TTS--
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCE-ECC--
Confidence 34456688999999999999999999999999999999999998888888 99999999999999999999876 666
Q ss_pred CceeeeccCccc
Q 013926 86 SPLQVKYADGEL 97 (434)
Q Consensus 86 ~~i~~~~~~~~~ 97 (434)
+.|+|.++....
T Consensus 82 ~~l~v~~a~~~~ 93 (102)
T 1x5s_A 82 RQIRVDQAGKSS 93 (102)
T ss_dssp CCCEEEEEECCC
T ss_pred eEEEEEECCCCC
Confidence 677777765443
No 218
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.65 E-value=4e-16 Score=115.65 Aligned_cols=80 Identities=24% Similarity=0.381 Sum_probs=72.5
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCcee
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 89 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~ 89 (434)
..+.++|||+|||+++++++|+++|+.||.|.+|.+..++.++.++ ||||+|.+.++|++|++.||+.. +.| +.|+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~ 80 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFG--RTIR 80 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE-ETT--EECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCE-ECC--cEEE
Confidence 4678999999999999999999999999999999999998888888 99999999999999999999876 556 6777
Q ss_pred eecc
Q 013926 90 VKYA 93 (434)
Q Consensus 90 ~~~~ 93 (434)
+.++
T Consensus 81 v~~a 84 (85)
T 3mdf_A 81 VNLA 84 (85)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7664
No 219
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.65 E-value=5.7e-16 Score=114.24 Aligned_cols=80 Identities=28% Similarity=0.458 Sum_probs=72.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeec
Q 013926 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 92 (434)
Q Consensus 14 ~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~ 92 (434)
+.+|||+|||+++++++|+++|+.||.|.+|.+..++.++.++ ||||+|.+.++|++|++.||+.. +.| +.+++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g--~~l~v~~ 77 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD-LNG--RPLRINW 77 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE-ETT--EECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCe-eCC--cEEEEEe
Confidence 4689999999999999999999999999999999998888888 99999999999999999999876 566 7788887
Q ss_pred cCcc
Q 013926 93 ADGE 96 (434)
Q Consensus 93 ~~~~ 96 (434)
+.++
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 7644
No 220
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.4e-16 Score=119.94 Aligned_cols=88 Identities=24% Similarity=0.325 Sum_probs=78.0
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
...+..+.++|||+|||+++++++|+++|+.||.|..|.+..++.++.++ ||||+|.+.++|++|++.||+.. +.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g-- 82 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAE-LDG-- 82 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCC-BTT--
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCE-ECC--
Confidence 34556778999999999999999999999999999999999999888888 99999999999999999999876 666
Q ss_pred CceeeeccCccc
Q 013926 86 SPLQVKYADGEL 97 (434)
Q Consensus 86 ~~i~~~~~~~~~ 97 (434)
+.|.|.++....
T Consensus 83 ~~l~V~~a~~~~ 94 (103)
T 2dnm_A 83 RELRVQVARYGR 94 (103)
T ss_dssp BCCEEEECSSCC
T ss_pred cEEEEEECCcCC
Confidence 778888776543
No 221
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.1e-16 Score=118.66 Aligned_cols=86 Identities=22% Similarity=0.258 Sum_probs=76.6
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
...+.++|||+|||+++++++|+++|+.||.|.+|.+..++.++.++ ||||+|.+.++|++|++.||+.. +.| +.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l 80 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQV-FQG--RML 80 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEE-SSS--CEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCE-ECC--cEE
Confidence 45678999999999999999999999999999999999998888888 99999999999999999999876 556 778
Q ss_pred eeeccCcccc
Q 013926 89 QVKYADGELE 98 (434)
Q Consensus 89 ~~~~~~~~~~ 98 (434)
.|.++.....
T Consensus 81 ~V~~a~~~~~ 90 (99)
T 1whw_A 81 HVLPSTIKKE 90 (99)
T ss_dssp EEEECCCCST
T ss_pred EEEEcCCCcc
Confidence 8887765543
No 222
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.65 E-value=8.5e-16 Score=119.13 Aligned_cols=86 Identities=24% Similarity=0.443 Sum_probs=77.4
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
.....+.++|||+|||+++++++|+++|+.||.|..|.++.++.++.++ ||||+|.+.++|++|++.+|+.. +.| +
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~-i~g--~ 96 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE-LAG--R 96 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCC-SSS--S
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--E
Confidence 5566788999999999999999999999999999999999999888888 99999999999999999999876 666 7
Q ss_pred ceeeeccCcc
Q 013926 87 PLQVKYADGE 96 (434)
Q Consensus 87 ~i~~~~~~~~ 96 (434)
.|+|.++..+
T Consensus 97 ~l~V~~a~~k 106 (108)
T 2jrs_A 97 PMKVGHVTER 106 (108)
T ss_dssp CCEEECSCSS
T ss_pred EEEEEEcccC
Confidence 7888777644
No 223
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.65 E-value=1.7e-16 Score=128.22 Aligned_cols=121 Identities=18% Similarity=0.246 Sum_probs=75.8
Q ss_pred eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeeccCcccccCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccC
Q 013926 57 CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG 136 (434)
Q Consensus 57 ~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~ 136 (434)
++|..|++...+..|+..+++....... ..... ..+......++|||+|||.++++++|+++|+.||.|..|.++.+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~--~~~~~-~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~ 82 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG--SMSYG-RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD 82 (135)
T ss_dssp -------------------------------CCSC-CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC--CCCcC-CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec
Confidence 7899999999999999999876533221 11111 11222334689999999999999999999999999999999988
Q ss_pred C-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeeccCh
Q 013926 137 S-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 183 (434)
Q Consensus 137 ~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~~~ 183 (434)
. ++.++|+|||+|.+.++|++|++.|++.. ++|+ .|.|.|+...
T Consensus 83 ~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~-i~g~--~l~V~~a~~~ 127 (135)
T 2lea_A 83 RYTKESRGFAFVRFHDKRDAEDAMDAMDGAV-LDGR--ELRVQMARYG 127 (135)
T ss_dssp SSSSSCCSCCEEECSCHHHHHHHHTTTTTCC-SSSS--CCEEEECCCC
T ss_pred CCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECCE--EEEEEECCCC
Confidence 6 78899999999999999999999999987 7777 5788888654
No 224
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.6e-16 Score=119.51 Aligned_cols=90 Identities=28% Similarity=0.421 Sum_probs=78.6
Q ss_pred cccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeec-CCCCccc-eEEEEeCCHHHHHHHHHHh-ccCccC
Q 013926 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKD-KTTRASR-CCFVICPSRQEADKAVNAC-HNKKTL 81 (434)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~-~~~~~~~-~afV~f~~~~~A~~al~~~-~~~~~~ 81 (434)
........+.++|||+|||+++++++|+++|+.||.|..|.++.+ +.++.++ ||||+|.+.++|++|++.| |+.. +
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~-~ 84 (107)
T 2cph_A 6 SGQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH-L 84 (107)
T ss_dssp CCSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB-S
T ss_pred CcccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe-E
Confidence 345566788999999999999999999999999999999999998 6778878 9999999999999999999 7765 6
Q ss_pred CCCCCceeeeccCccc
Q 013926 82 PGASSPLQVKYADGEL 97 (434)
Q Consensus 82 ~g~~~~i~~~~~~~~~ 97 (434)
.| +.|.|.++....
T Consensus 85 ~g--~~l~v~~a~~~~ 98 (107)
T 2cph_A 85 YG--RRLVLEWADSEV 98 (107)
T ss_dssp SS--CBCEEEECCCCC
T ss_pred CC--CEEEEEeCCCCC
Confidence 66 778888776554
No 225
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.65 E-value=5.9e-16 Score=123.97 Aligned_cols=88 Identities=22% Similarity=0.332 Sum_probs=78.5
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
......+.++|||+|||+++++++|+++|+.||.|.+|.++.++.++.++ ||||+|.+.++|++||+.||+.. +.|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~-i~g-- 115 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME-LDG-- 115 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCC-SSS--
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECC--
Confidence 45566788999999999999999999999999999999999999888888 99999999999999999999876 666
Q ss_pred CceeeeccCccc
Q 013926 86 SPLQVKYADGEL 97 (434)
Q Consensus 86 ~~i~~~~~~~~~ 97 (434)
+.|+|.++..+.
T Consensus 116 ~~l~V~~a~~~~ 127 (129)
T 2kxn_B 116 RRIRVDFSITKR 127 (129)
T ss_dssp SCCEESCCSSSS
T ss_pred EEEEEEEecCCC
Confidence 778888776543
No 226
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.65 E-value=4.9e-16 Score=117.98 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=73.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeee
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 91 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~ 91 (434)
++++|||+|||+++++++|+++|+.||.|.+|.+..++.++.++ ||||+|.+.++|++|++.||+.. +.| +.++|.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~V~ 77 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQ-LGS--RFLKCG 77 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe-ECC--eEEEEE
Confidence 57899999999999999999999999999999999998888888 99999999999999999999876 666 778888
Q ss_pred ccCcc
Q 013926 92 YADGE 96 (434)
Q Consensus 92 ~~~~~ 96 (434)
++...
T Consensus 78 ~a~~~ 82 (96)
T 2x1f_A 78 YSSNS 82 (96)
T ss_dssp ECSCS
T ss_pred EcCCC
Confidence 77654
No 227
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.65 E-value=3.1e-16 Score=117.47 Aligned_cols=79 Identities=15% Similarity=0.259 Sum_probs=68.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccC--ceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeee
Q 013926 15 VKLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 91 (434)
Q Consensus 15 ~~l~v~nLp~~~te~~l~~~f~~~g--~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~ 91 (434)
.+|||+|||+++|+++|+++|+.|| .|.+|.++.++.++.++ ||||+|.+.++|++|++.||+.. +.| +.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~-~~g--r~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE-LHG--QNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSC-SSS--CCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCe-eCC--EEEEEE
Confidence 5799999999999999999999999 99999999999999988 99999999999999999999876 667 777777
Q ss_pred ccCcc
Q 013926 92 YADGE 96 (434)
Q Consensus 92 ~~~~~ 96 (434)
++.+.
T Consensus 79 ~~~~~ 83 (90)
T 3p5t_L 79 PSNKL 83 (90)
T ss_dssp CC---
T ss_pred ECCCC
Confidence 76644
No 228
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=8.7e-16 Score=117.57 Aligned_cols=85 Identities=18% Similarity=0.314 Sum_probs=75.4
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
....+.++|||+|||+++++++|+++|+.||.|.+|.+..++ ++.++ ||||+|.+.++|++|++.||+.. +.| +.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 87 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMT-IKE--NI 87 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEE-SSS--CE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCE-ECC--EE
Confidence 445678999999999999999999999999999999999998 67777 99999999999999999999865 666 77
Q ss_pred eeeeccCccc
Q 013926 88 LQVKYADGEL 97 (434)
Q Consensus 88 i~~~~~~~~~ 97 (434)
|+|.++.+..
T Consensus 88 l~v~~a~~~~ 97 (100)
T 2do4_A 88 IKVAISNSGP 97 (100)
T ss_dssp EEEEECCCCS
T ss_pred EEEEECCCCC
Confidence 8888877543
No 229
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=118.17 Aligned_cols=86 Identities=22% Similarity=0.373 Sum_probs=75.4
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhc-cCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKE-FALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~-~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
+.+..+.++|||+|||+++|+++|+++|+. ||.|.+|.++.++ ++.++ ||||+|.+.++|++|++.||+...+.|
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g-- 79 (104)
T 2dhg_A 3 SGSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGS-- 79 (104)
T ss_dssp CCCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS--
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCC--
Confidence 445678899999999999999999999999 9999999999998 77777 999999999999999999998764666
Q ss_pred CceeeeccCcc
Q 013926 86 SPLQVKYADGE 96 (434)
Q Consensus 86 ~~i~~~~~~~~ 96 (434)
+.|.|.++...
T Consensus 80 ~~l~v~~a~~~ 90 (104)
T 2dhg_A 80 KPVRLSVAIPK 90 (104)
T ss_dssp SCCCCCBCCCC
T ss_pred EeEEEEEccCC
Confidence 66777776543
No 230
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-15 Score=115.96 Aligned_cols=84 Identities=20% Similarity=0.385 Sum_probs=75.1
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeE--------EEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhcc
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--------VNIIKDKTTRASR-CCFVICPSRQEADKAVNACHN 77 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~ 77 (434)
......+.++|||+|||+++++++|+++|+.||.|.. |.++.++.++.++ ||||+|.+.++|++|++.||+
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3456678899999999999999999999999999999 9999999888888 999999999999999999998
Q ss_pred CccCCCCCCceeeecc
Q 013926 78 KKTLPGASSPLQVKYA 93 (434)
Q Consensus 78 ~~~~~g~~~~i~~~~~ 93 (434)
.. +.| +.|+|.++
T Consensus 86 ~~-~~g--~~l~V~~A 98 (99)
T 2la6_A 86 KE-FSG--NPIKVSFA 98 (99)
T ss_dssp CB-SSS--SBCEEEEC
T ss_pred CE-eCC--cEEEEEec
Confidence 76 666 67777654
No 231
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.4e-16 Score=118.91 Aligned_cols=79 Identities=15% Similarity=0.302 Sum_probs=68.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
.+++|||+|||.++++++|+++|+.||.|.+++|+.+ ++|||||+|.+.++|++|+.. ...+.|++|+|.+++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 5689999999999999999999999999999999754 689999999999999864332 455699999999999
Q ss_pred CCcCCC
Q 013926 427 DNKQNK 432 (434)
Q Consensus 427 ~~~~~~ 432 (434)
.+....
T Consensus 77 ~~~~~~ 82 (88)
T 1wf0_A 77 PKHNSN 82 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 877543
No 232
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=116.77 Aligned_cols=85 Identities=14% Similarity=0.169 Sum_probs=72.1
Q ss_pred cccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCc-cCCC
Q 013926 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKK-TLPG 83 (434)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~-~~~g 83 (434)
........++++|||+|||+++++++|+++|++||.|.+|.+++++. ||||+|.+.++|++|++.|++.. .+.|
T Consensus 6 ~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg-----~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 6 SGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR-----QALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CCSCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTT-----EEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCC-----EEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34455667889999999999999999999999999999999887543 99999999999999999987653 3666
Q ss_pred CCCceeeeccCcc
Q 013926 84 ASSPLQVKYADGE 96 (434)
Q Consensus 84 ~~~~i~~~~~~~~ 96 (434)
+.|.|.++..+
T Consensus 81 --r~l~V~~a~~~ 91 (104)
T 1wex_A 81 --QQAFFNYSTSK 91 (104)
T ss_dssp --SBCEEEECSSS
T ss_pred --EEEEEEEccCc
Confidence 78888887644
No 233
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.2e-16 Score=120.59 Aligned_cols=84 Identities=17% Similarity=0.344 Sum_probs=72.1
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccC-ccCCCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNK-KTLPGAS 85 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~-~~~~g~~ 85 (434)
.+....++++|||+|||+++||++|+++|++||.|.+|.+++++. ||||+|.+.++|++|++.+++. ..+.|
T Consensus 24 ~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG-----~AFVeF~~~e~A~~Ai~~l~~~~~~l~G-- 96 (119)
T 2ad9_A 24 SRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKN-----QAFIEMNTEEAANTMVNYYTSVTPVLRG-- 96 (119)
T ss_dssp TTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGT-----EEEEECSCHHHHHHHHHHHHHHCCCBTT--
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCC-----EEEEEECCHHHHHHHHHHhccCCceECC--
Confidence 355667889999999999999999999999999999999998643 9999999999999999998753 34667
Q ss_pred CceeeeccCccc
Q 013926 86 SPLQVKYADGEL 97 (434)
Q Consensus 86 ~~i~~~~~~~~~ 97 (434)
+.|+|.++..+.
T Consensus 97 r~l~V~~a~~k~ 108 (119)
T 2ad9_A 97 QPIYIQFSNHKE 108 (119)
T ss_dssp BCCEEEECSSSS
T ss_pred eEEEEEEccCCC
Confidence 788888876543
No 234
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=6.5e-16 Score=116.86 Aligned_cols=84 Identities=26% Similarity=0.464 Sum_probs=74.7
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
......+.++|||+|||+++++++|+++|+.||.|.+|.+..++.++.++ ||||+|.+.++|++|++.||+.. +.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g-- 85 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQ-LFG-- 85 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEE-ETT--
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCe-eCC--
Confidence 34556778999999999999999999999999999999999999888888 99999999999999999999876 555
Q ss_pred Cceeeecc
Q 013926 86 SPLQVKYA 93 (434)
Q Consensus 86 ~~i~~~~~ 93 (434)
+.|+|.++
T Consensus 86 ~~l~v~~a 93 (94)
T 2e5h_A 86 RVIKASIA 93 (94)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEec
Confidence 77777665
No 235
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.7e-16 Score=120.17 Aligned_cols=88 Identities=22% Similarity=0.319 Sum_probs=78.1
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
......+.++|||+|||+++++++|+++|+.||.|..|.++.++.++.++ ||||+|.+.++|++|++.||+.. +.|
T Consensus 5 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g-- 81 (102)
T 2cqb_A 5 SSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFG-- 81 (102)
T ss_dssp SSCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEE-ETT--
T ss_pred cCCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--
Confidence 44556788999999999999999999999999999999999998888888 99999999999999999999876 556
Q ss_pred CceeeeccCccc
Q 013926 86 SPLQVKYADGEL 97 (434)
Q Consensus 86 ~~i~~~~~~~~~ 97 (434)
+.|+|.++....
T Consensus 82 ~~l~V~~a~~~~ 93 (102)
T 2cqb_A 82 RTIRVNLAKPMR 93 (102)
T ss_dssp EEEEEEECCCCC
T ss_pred cEEEEEeCCCCC
Confidence 788888876544
No 236
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=119.61 Aligned_cols=88 Identities=22% Similarity=0.301 Sum_probs=77.6
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhc------cCc
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACH------NKK 79 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~------~~~ 79 (434)
......+.++|||+|||+++++++|+++|..||.|..|.++.++.++.++ ||||+|.+.++|++|++.+| +..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 8 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 34556778999999999999999999999999999999999999888888 99999999999999999998 654
Q ss_pred cCCCCCCceeeeccCccc
Q 013926 80 TLPGASSPLQVKYADGEL 97 (434)
Q Consensus 80 ~~~g~~~~i~~~~~~~~~ 97 (434)
+.| +.|.|.++..+.
T Consensus 88 -~~g--~~l~v~~a~~~~ 102 (111)
T 1x4h_A 88 -LDG--RQLKVDLAVTRD 102 (111)
T ss_dssp -SSS--CEEEEECCCCCC
T ss_pred -EcC--EEEEEEECCCCc
Confidence 666 778888876543
No 237
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=5.2e-16 Score=119.06 Aligned_cols=89 Identities=26% Similarity=0.384 Sum_probs=74.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeeccC
Q 013926 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYAD 94 (434)
Q Consensus 15 ~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~~ 94 (434)
++|||+|||+++|+++|+++|+.||.|.+|.+..+ ..+||||+|.+.++|++|++.||+.. +.| +.++|.++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKV-ICG--SRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSC-SSS--CCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCe-ECC--cEEEEEEcc
Confidence 58999999999999999999999999999999887 12299999999999999999999876 666 667777775
Q ss_pred ccccc-----------CCCeEEEeCCC
Q 013926 95 GELER-----------LEHKLFIGMLP 110 (434)
Q Consensus 95 ~~~~~-----------~~~~v~v~nlp 110 (434)
..... ...+|||+||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 74 GMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCcccCCCCCccccCCCceecCCCC
Confidence 43321 15678999886
No 238
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.6e-16 Score=118.81 Aligned_cols=82 Identities=18% Similarity=0.283 Sum_probs=70.8
Q ss_pred ccCccCCceEEEcCCCC-CCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCc-cCCCCC
Q 013926 8 KKSSEERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKK-TLPGAS 85 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~-~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~-~~~g~~ 85 (434)
.....++++|||+|||+ ++|++||+++|++||.|.+|.+++++. ||||+|.+.++|.+|++.||+.. .+.|
T Consensus 9 ~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg-----~aFVef~~~~~A~~Ai~~l~~~~~~~~G-- 81 (102)
T 1x4d_A 9 KGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKIN-----EAFIEMATTEDAQAAVDYYTTTPALVFG-- 81 (102)
T ss_dssp CCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSS-----CEEEEESSHHHHHHHHHHHHHSCCEETT--
T ss_pred CCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCC-----EEEEEECCHHHHHHHHHHHcCCCceECC--
Confidence 34456889999999999 999999999999999999999988753 99999999999999999998753 3666
Q ss_pred CceeeeccCcc
Q 013926 86 SPLQVKYADGE 96 (434)
Q Consensus 86 ~~i~~~~~~~~ 96 (434)
+.|.|.++...
T Consensus 82 r~l~V~~a~~~ 92 (102)
T 1x4d_A 82 KPVRVHLSQKY 92 (102)
T ss_dssp EECEEEEECCC
T ss_pred cEEEEEECCCC
Confidence 78888877644
No 239
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.63 E-value=3.4e-16 Score=119.68 Aligned_cols=83 Identities=19% Similarity=0.235 Sum_probs=73.4
Q ss_pred ccCCceEEEcCCCC------CCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 11 SEERVKLFVGQVPK------HMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 11 ~~~~~~l~v~nLp~------~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
+..+++|||+|||+ ++++++|+++|++||.|.+|.++.++.|+.++ ||||+|.+.++|++||+.||+..+.++
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578999999999 99999999999999999999999999989988 999999999999999999999874332
Q ss_pred CCCceeeeccCc
Q 013926 84 ASSPLQVKYADG 95 (434)
Q Consensus 84 ~~~~i~~~~~~~ 95 (434)
+.|+|.++.+
T Consensus 83 --r~l~V~~a~~ 92 (100)
T 3ns6_A 83 --HRLFLYTMKD 92 (100)
T ss_dssp --CBCEEEESHH
T ss_pred --eEEEEEECch
Confidence 5677776654
No 240
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.6e-16 Score=116.61 Aligned_cols=87 Identities=21% Similarity=0.329 Sum_probs=73.0
Q ss_pred ccccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhcc-CccCC
Q 013926 4 SKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHN-KKTLP 82 (434)
Q Consensus 4 ~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~-~~~~~ 82 (434)
+...+....++++|||+|||+++++++|+++|++||.|.+|.+++++. ||||+|.+.++|++|++.+++ ...+.
T Consensus 5 s~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg-----~aFVef~~~~~A~~Ai~~l~~~~~~~~ 79 (101)
T 2cq1_A 5 SSGDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKN-----QAFLELATEEAAITMVNYYSAVTPHLR 79 (101)
T ss_dssp CCCCCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTT-----EEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCC-----EEEEEECCHHHHHHHHHHhccCCceEC
Confidence 344566778899999999999999999999999999999999887633 999999999999999998864 23366
Q ss_pred CCCCceeeeccCccc
Q 013926 83 GASSPLQVKYADGEL 97 (434)
Q Consensus 83 g~~~~i~~~~~~~~~ 97 (434)
| +.|.|.++..+.
T Consensus 80 G--r~l~V~~a~~~~ 92 (101)
T 2cq1_A 80 N--QPIYIQYSNHKE 92 (101)
T ss_dssp T--EECEEEECSCSS
T ss_pred C--cEEEEEEcCccc
Confidence 6 788888887543
No 241
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.63 E-value=9.9e-16 Score=119.48 Aligned_cols=86 Identities=20% Similarity=0.282 Sum_probs=76.3
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
.....++++|||+|||+++++++|+++|+.||.|.+|.+..++.++.++ ||||+|.+.++|++|++.||+.. +.| +
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~ 96 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE-IMG--Q 96 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCE-ETT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE-ECC--c
Confidence 3445677899999999999999999999999999999999998888888 99999999999999999999876 566 7
Q ss_pred ceeeeccCcc
Q 013926 87 PLQVKYADGE 96 (434)
Q Consensus 87 ~i~~~~~~~~ 96 (434)
.|.|.++...
T Consensus 97 ~l~V~~a~~~ 106 (110)
T 1oo0_B 97 TIQVDWCFVK 106 (110)
T ss_dssp ECEEEESEES
T ss_pred EEEEEEcccC
Confidence 7888877644
No 242
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=6.9e-16 Score=114.90 Aligned_cols=71 Identities=25% Similarity=0.487 Sum_probs=66.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCcee
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAF----G-------RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL 415 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~f----G-------~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l 415 (434)
..++|||+|||.++++++|+++|+.| | .|.++++..+ +|||||+|.+.++|.+|+ .|||..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 56899999999999999999999999 8 9999998654 689999999999999999 9999999
Q ss_pred CCeEEEEEE
Q 013926 416 GGKKLKVQL 424 (434)
Q Consensus 416 ~g~~i~v~~ 424 (434)
.|++|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 243
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=117.13 Aligned_cols=82 Identities=17% Similarity=0.258 Sum_probs=71.3
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
.+.+.+.++|||+|||+++|+++|+++|+.||+|.+|.++.++. +.++ ||||+|.+.++|.+||+ +++.. +.| +
T Consensus 5 ~~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~-~~g--r 79 (103)
T 1s79_A 5 LKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQK-YKE--T 79 (103)
T ss_dssp CSSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCC-CTT--T
T ss_pred ccccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCE-ECC--E
Confidence 34567789999999999999999999999999999999999987 7777 99999999999999999 76654 777 6
Q ss_pred ceeeeccC
Q 013926 87 PLQVKYAD 94 (434)
Q Consensus 87 ~i~~~~~~ 94 (434)
.|.|.+..
T Consensus 80 ~l~V~~~~ 87 (103)
T 1s79_A 80 DLLILFKD 87 (103)
T ss_dssp TCEEEEHH
T ss_pred EEEEEEch
Confidence 66666554
No 244
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.63 E-value=8.2e-16 Score=118.08 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=71.4
Q ss_pred CCceEEEcCC--CCCCC--------HHHHHHHhhccCCeEEEEEEecCCC--CCeeeEEEEEeCCHHHHHHHHHHhCCce
Q 013926 347 PGANLFIYHI--PQEFG--------DQELGNAFQAFGRVLSAKVFVDKAT--GVSKCFGFVSYESPASAQNAIAMMNGCQ 414 (434)
Q Consensus 347 ~~~~v~V~nL--p~~~t--------~~~L~~~F~~fG~v~~v~i~~~~~~--g~~~g~afV~f~~~~~A~~A~~~l~g~~ 414 (434)
++++|.|.|| |.++. ++||++.|++||.|.+|+|++++.+ +.++|+|||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 6688999999 44443 3699999999999999999988754 3679999999999999999999999999
Q ss_pred eCCeEEEEEEecC
Q 013926 415 LGGKKLKVQLKRD 427 (434)
Q Consensus 415 l~g~~i~v~~a~~ 427 (434)
++||+|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999854
No 245
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.8e-16 Score=117.25 Aligned_cols=84 Identities=24% Similarity=0.401 Sum_probs=75.3
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEE-EEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCcee
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEV-NIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 89 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~-~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~ 89 (434)
.+.++|||+|||+++++++|+++|+.||.|..| .+..++.++.++ ||||+|.+.++|++|++.||+.. +.| +.|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~ 79 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY-LCN--RPIT 79 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCE-ETT--EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE-ECC--EEEE
Confidence 468999999999999999999999999999999 999998888888 99999999999999999999876 556 7788
Q ss_pred eeccCcccc
Q 013926 90 VKYADGELE 98 (434)
Q Consensus 90 ~~~~~~~~~ 98 (434)
|.++.....
T Consensus 80 v~~a~~~~~ 88 (96)
T 1x5t_A 80 VSYAFKKDS 88 (96)
T ss_dssp EEESCCCCC
T ss_pred EEEecccCC
Confidence 888765543
No 246
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.63 E-value=1.3e-15 Score=119.20 Aligned_cols=81 Identities=17% Similarity=0.326 Sum_probs=71.8
Q ss_pred CCceEEEcCC--CCCC---CHHHHHHHhhccCCeEEEEEEecCC----CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 013926 347 PGANLFIYHI--PQEF---GDQELGNAFQAFGRVLSAKVFVDKA----TGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 417 (434)
Q Consensus 347 ~~~~v~V~nL--p~~~---t~~~L~~~F~~fG~v~~v~i~~~~~----~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g 417 (434)
++++|+|+|| |.++ .++||++.|++||.|.+|+|+.++. +++++|++||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 6789999999 3333 3689999999999999999998864 46788999999999999999999999999999
Q ss_pred eEEEEEEecC
Q 013926 418 KKLKVQLKRD 427 (434)
Q Consensus 418 ~~i~v~~a~~ 427 (434)
|.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999853
No 247
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.9e-16 Score=118.76 Aligned_cols=84 Identities=25% Similarity=0.384 Sum_probs=75.4
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
.+.+.++|||+|||+++++++|+++|+.||.|..|.+..++.++.++ ||||+|.+.++|++|++.+|+.. +.| +.|
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l 80 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGRE-FSG--RAL 80 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBS-CSS--SCB
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe-eCC--cEE
Confidence 45667999999999999999999999999999999999998888888 99999999999999999999876 566 777
Q ss_pred eeeccCcc
Q 013926 89 QVKYADGE 96 (434)
Q Consensus 89 ~~~~~~~~ 96 (434)
+|.++...
T Consensus 81 ~v~~a~~~ 88 (104)
T 1p1t_A 81 RVDNAASE 88 (104)
T ss_dssp EEEETTCT
T ss_pred EEEeCCCc
Confidence 88777644
No 248
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-15 Score=119.07 Aligned_cols=82 Identities=29% Similarity=0.462 Sum_probs=73.3
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCcee
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 89 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~ 89 (434)
..+.++|||+|||+++++++|+++|+.||.|.+|.+..++ ++.++ ||||+|.+.++|++|++.||+.. +.| +.|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~-~~g--~~l~ 79 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKS-LHG--KAIK 79 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCB-CSS--SBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCE-ECC--EEEE
Confidence 4677999999999999999999999999999999999998 67777 99999999999999999999876 666 7778
Q ss_pred eeccCcc
Q 013926 90 VKYADGE 96 (434)
Q Consensus 90 ~~~~~~~ 96 (434)
|.++...
T Consensus 80 V~~a~~~ 86 (116)
T 2fy1_A 80 VEQAKKP 86 (116)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 8777644
No 249
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=120.51 Aligned_cols=86 Identities=29% Similarity=0.423 Sum_probs=77.0
Q ss_pred ccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCC
Q 013926 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGA 84 (434)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~ 84 (434)
.....+.+.++|||+|||+++++++|+++|+.||.|..|.++.++.++.++ ||||+|.+.++|++||+.+|+ .+.|
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~--~~~g- 85 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP--IIDG- 85 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC--EETT-
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC--cCCC-
Confidence 345667888999999999999999999999999999999999999888888 999999999999999999987 4777
Q ss_pred CCceeeeccCc
Q 013926 85 SSPLQVKYADG 95 (434)
Q Consensus 85 ~~~i~~~~~~~ 95 (434)
+.|+|.++..
T Consensus 86 -~~l~V~~a~~ 95 (116)
T 2cqd_A 86 -RKANVNLAYL 95 (116)
T ss_dssp -EECEEEESTT
T ss_pred -EEEEEEEccc
Confidence 7777777754
No 250
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.4e-16 Score=114.49 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=70.3
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
.+.++|||+|||+++++++|+++|+.||.|..|.+..++.++.++ ||||+|.+.++|++|++.||+.. +.| +.+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~~~~ 79 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASG-VQA--QMAKQ 79 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHT-CCE--ESCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCe-Eee--EEEee
Confidence 578999999999999999999999999999999999998888888 99999999999999999999876 555 55555
Q ss_pred ecc
Q 013926 91 KYA 93 (434)
Q Consensus 91 ~~~ 93 (434)
.++
T Consensus 80 ~~~ 82 (85)
T 1x4e_A 80 SGP 82 (85)
T ss_dssp SCC
T ss_pred cCC
Confidence 443
No 251
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=1.7e-15 Score=116.65 Aligned_cols=88 Identities=22% Similarity=0.419 Sum_probs=77.0
Q ss_pred cccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
........+.++|||+|||+++++++|+++|+.|| |.+|.++.++.++.++ ||||+|.+.++|++|+ .||+.. +.|
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g 82 (103)
T 2dng_A 6 SGKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGAL-LGD 82 (103)
T ss_dssp CCCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCE-ETT
T ss_pred CCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCe-ECC
Confidence 34455677889999999999999999999999997 9999999999988888 9999999999999999 898865 566
Q ss_pred CCCceeeeccCccc
Q 013926 84 ASSPLQVKYADGEL 97 (434)
Q Consensus 84 ~~~~i~~~~~~~~~ 97 (434)
+.|+|.++....
T Consensus 83 --~~l~V~~a~~~~ 94 (103)
T 2dng_A 83 --RSLRVDIAEGRK 94 (103)
T ss_dssp --EECEEEECCCCC
T ss_pred --eEEEEEEecCCC
Confidence 778888776544
No 252
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.62 E-value=1.2e-15 Score=113.61 Aligned_cols=82 Identities=24% Similarity=0.390 Sum_probs=70.0
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
...++.+.++|||+|||+++++++|+++|+.||.|.+|.++.++.++.++ ||||+|.+.++|++|++. ++.. +.|
T Consensus 4 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~-~~g-- 79 (87)
T 3s7r_A 4 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHR-LDG-- 79 (87)
T ss_dssp ---CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEE-ETT--
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCE-ECC--
Confidence 34567788999999999999999999999999999999999999888888 999999999999999976 4543 666
Q ss_pred Cceeeec
Q 013926 86 SPLQVKY 92 (434)
Q Consensus 86 ~~i~~~~ 92 (434)
+.|.|++
T Consensus 80 ~~i~v~~ 86 (87)
T 3s7r_A 80 RVIDPKK 86 (87)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 6666654
No 253
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=9.9e-16 Score=116.80 Aligned_cols=83 Identities=22% Similarity=0.300 Sum_probs=73.6
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCC---CCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKT---TRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~---~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
.+.++|||+|||+++++++|+++|+.||.|..|.+..++. ++.++ ||||+|.+.++|++|++.||+.. +.| +.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT-VDG--HK 79 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCE-ETT--EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCe-eCC--eE
Confidence 5789999999999999999999999999999999999876 55777 99999999999999999999876 566 77
Q ss_pred eeeeccCccc
Q 013926 88 LQVKYADGEL 97 (434)
Q Consensus 88 i~~~~~~~~~ 97 (434)
|.|.++....
T Consensus 80 l~V~~a~~~~ 89 (98)
T 2cpf_A 80 LEVRISERAT 89 (98)
T ss_dssp CEEECSSCSS
T ss_pred EEEEEccCCC
Confidence 8888876543
No 254
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=115.13 Aligned_cols=83 Identities=22% Similarity=0.339 Sum_probs=72.7
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
...+.+.++|||+|||+++++++|+++|+.||.|.+|.+..++. +.++ ||||+|.+.++|++|++.||+.. +.| +
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 85 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIR-LYG--R 85 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCE-ETT--E
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCE-ECC--C
Confidence 45667889999999999999999999999999999999999986 6667 99999999999999999999876 556 7
Q ss_pred ceeeeccC
Q 013926 87 PLQVKYAD 94 (434)
Q Consensus 87 ~i~~~~~~ 94 (434)
.|+|.++.
T Consensus 86 ~l~V~~a~ 93 (95)
T 2ywk_A 86 PINVSGPS 93 (95)
T ss_dssp ECEEECCC
T ss_pred EEEEEEcC
Confidence 77777664
No 255
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.62 E-value=7.7e-16 Score=121.77 Aligned_cols=84 Identities=24% Similarity=0.345 Sum_probs=74.5
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
...+..+.++|||+|||+++++++|+++|++||.|.+|.++.++.++.++ ||||+|.+.++|++|++.||+.. +.|
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g-- 109 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQ-VGT-- 109 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCE-ETT--
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCE-ECC--
Confidence 44566788999999999999999999999999999999999998888888 99999999999999999999876 556
Q ss_pred Cceeeecc
Q 013926 86 SPLQVKYA 93 (434)
Q Consensus 86 ~~i~~~~~ 93 (434)
+.|+|.++
T Consensus 110 ~~l~V~~a 117 (118)
T 2khc_A 110 KRLKVQLK 117 (118)
T ss_dssp EECCEEEC
T ss_pred EEEEEEec
Confidence 66666654
No 256
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.62 E-value=9.3e-16 Score=110.81 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=64.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeec
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 92 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~ 92 (434)
.+..|||+||++.+||++|+++|.+||+|.++++..++. ||||+|.+.++|++|++.||+.. +.| +.|+|++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kG-----faFVey~~~~eA~~Ai~~Ln~~~-l~g--r~I~V~~ 77 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQG-----IALCKYTTREEANKAQMALNNCV-LAN--TTIFAES 77 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTT-----EEEEEESSHHHHHHHHHHHTTEE-ETT--EEEEEEC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCc-----EEEEEECCHHHHHHHHHHhcCCE-ECC--cEEEEEE
Confidence 477899999999999999999999999999999977433 99999999999999999999876 555 7777776
Q ss_pred c
Q 013926 93 A 93 (434)
Q Consensus 93 ~ 93 (434)
+
T Consensus 78 A 78 (89)
T 2wbr_A 78 P 78 (89)
T ss_dssp C
T ss_pred C
Confidence 5
No 257
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=2e-15 Score=129.75 Aligned_cols=80 Identities=19% Similarity=0.222 Sum_probs=73.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 426 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~~a~ 426 (434)
..++|||+|||.++|+++|+++|+.||.|.+|+|+++. +|.++|||||+|.+.++|++|+..+ +..++|++|+|.+++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 35899999999999999999999999999999999986 6999999999999999999999875 569999999999977
Q ss_pred CC
Q 013926 427 DN 428 (434)
Q Consensus 427 ~~ 428 (434)
.-
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 63
No 258
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=117.04 Aligned_cols=88 Identities=14% Similarity=0.266 Sum_probs=76.3
Q ss_pred cccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCC-Cccc-eEEEEeCCHHHHHHHHHHhccCccCC
Q 013926 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT-RASR-CCFVICPSRQEADKAVNACHNKKTLP 82 (434)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~-~~~~-~afV~f~~~~~A~~al~~~~~~~~~~ 82 (434)
........+.++|||+|||+++++++|+++|+.|| |.+|.++.++.+ +.++ ||||+|.+.++|++|| .||+.. +.
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~ 82 (104)
T 1wi8_A 6 SGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES-LG 82 (104)
T ss_dssp CCCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCE-ET
T ss_pred CCCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCE-eC
Confidence 34455667889999999999999999999999999 999999999887 7777 9999999999999999 998876 66
Q ss_pred CCCCceeeeccCccc
Q 013926 83 GASSPLQVKYADGEL 97 (434)
Q Consensus 83 g~~~~i~~~~~~~~~ 97 (434)
| +.|.|.++....
T Consensus 83 g--~~l~V~~a~~~~ 95 (104)
T 1wi8_A 83 N--KRIRVDVADQAQ 95 (104)
T ss_dssp T--EECEEEECCCCC
T ss_pred C--cEEEEEEccCCC
Confidence 6 777887776544
No 259
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=119.67 Aligned_cols=87 Identities=23% Similarity=0.289 Sum_probs=77.5
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCcee--------EEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVD--------EVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNK 78 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~ 78 (434)
..++.+.++|||+|||+++++++|+++|+.||.|. .|.++.++.++.++ ||||+|.+.++|++||+.||+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 45667889999999999999999999999999999 69999998888888 9999999999999999999987
Q ss_pred ccCCCCCCceeeeccCccc
Q 013926 79 KTLPGASSPLQVKYADGEL 97 (434)
Q Consensus 79 ~~~~g~~~~i~~~~~~~~~ 97 (434)
. +.| +.|+|.++....
T Consensus 89 ~-~~g--~~l~V~~a~~~~ 104 (113)
T 2cpe_A 89 D-FQG--SKLKVSLARKKP 104 (113)
T ss_dssp E-ETT--EECEEECSSCCC
T ss_pred c-cCC--CEEEEEECCCCC
Confidence 6 556 778888876544
No 260
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3e-15 Score=115.21 Aligned_cols=88 Identities=24% Similarity=0.397 Sum_probs=75.9
Q ss_pred cccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
........+.++|||+|||+++++++|+++|+.||.|..|.++.++.. ++ ||||+|.+.++|++|++.||+.. +.|
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~-~~g 82 (103)
T 2cq3_A 6 SGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTV-VEG 82 (103)
T ss_dssp CCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCE-ETT
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCE-ECC
Confidence 344566788899999999999999999999999999999999998653 45 99999999999999999999876 666
Q ss_pred CCCceeeeccCccc
Q 013926 84 ASSPLQVKYADGEL 97 (434)
Q Consensus 84 ~~~~i~~~~~~~~~ 97 (434)
+.|.|.++....
T Consensus 83 --~~l~v~~a~~~~ 94 (103)
T 2cq3_A 83 --RKIEVNNATARV 94 (103)
T ss_dssp --EECEEEECCSSC
T ss_pred --EEEEEEEcccCC
Confidence 778887776543
No 261
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.9e-15 Score=116.28 Aligned_cols=81 Identities=17% Similarity=0.294 Sum_probs=69.8
Q ss_pred CCCCceEEEcCCCCCCC-----------HHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCc
Q 013926 345 GPPGANLFIYHIPQEFG-----------DQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC 413 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~~t-----------~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 413 (434)
..++++|+|+||....+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|++|+..|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34678999999943322 5899999999999999966 553 37999999999999999999999999
Q ss_pred eeCCeEEEEEEecCCc
Q 013926 414 QLGGKKLKVQLKRDNK 429 (434)
Q Consensus 414 ~l~g~~i~v~~a~~~~ 429 (434)
.|.|++|+|.+++.+.
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999998754
No 262
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-15 Score=122.94 Aligned_cols=88 Identities=25% Similarity=0.384 Sum_probs=78.1
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
..+..+.++|||+|||+++++++|+++|+.||.|.+|.++.++.++.++ ||||+|.+.++|.+|++.||+.. +.| +
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 112 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFN-ILN--K 112 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEE-CSS--C
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--e
Confidence 4456677999999999999999999999999999999999999888888 99999999999999999999876 666 7
Q ss_pred ceeeeccCcccc
Q 013926 87 PLQVKYADGELE 98 (434)
Q Consensus 87 ~i~~~~~~~~~~ 98 (434)
.|+|.++.....
T Consensus 113 ~l~v~~a~~~~~ 124 (139)
T 1u6f_A 113 RLKVALAASGHQ 124 (139)
T ss_dssp EEEEEESSCCCC
T ss_pred EEEEEECCCCCC
Confidence 788888775543
No 263
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.8e-15 Score=115.44 Aligned_cols=87 Identities=22% Similarity=0.430 Sum_probs=75.4
Q ss_pred ccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCC
Q 013926 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGA 84 (434)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~ 84 (434)
.......+.++|||+|||+++++++|+++|+.||.|..|.++.++.+ ++ ||||+|.+.++|++|++.||+.. +.|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~-~~g- 82 (103)
T 2cqi_A 7 GMMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRK-ILG- 82 (103)
T ss_dssp CCCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEE-ETT-
T ss_pred CCCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCC-cCC-
Confidence 34456678899999999999999999999999999999999998654 35 99999999999999999999876 556
Q ss_pred CCceeeeccCccc
Q 013926 85 SSPLQVKYADGEL 97 (434)
Q Consensus 85 ~~~i~~~~~~~~~ 97 (434)
+.|+|.++....
T Consensus 83 -~~l~V~~a~~~~ 94 (103)
T 2cqi_A 83 -KEVKVNWATTPS 94 (103)
T ss_dssp -EEEEEEECCCTT
T ss_pred -CeEEEEECCCCc
Confidence 788888887543
No 264
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=116.93 Aligned_cols=84 Identities=15% Similarity=0.305 Sum_probs=70.9
Q ss_pred ccccCccCCceEEEcCCCCC-CCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccC-ccCCC
Q 013926 6 KEKKSSEERVKLFVGQVPKH-MTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNK-KTLPG 83 (434)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~-~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~-~~~~g 83 (434)
.-+....++++|||+|||++ +++++|+++|++||.|.+|.+++.+. ||||+|.+.++|++|++.||+. ..+.|
T Consensus 17 ~~~~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg-----~aFVef~~~~~A~~Ai~~l~~~~~~l~G 91 (112)
T 1x4f_A 17 KFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKS-----QAFIEMETREDAMAMVDHCLKKALWFQG 91 (112)
T ss_dssp CCCCSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTT-----EEEEECSSHHHHHHHHHHHHHSCCCSSS
T ss_pred hccccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCHHHHHHHHHHhccCCceECC
Confidence 33556778999999999998 99999999999999999999986543 9999999999999999998754 33666
Q ss_pred CCCceeeeccCcc
Q 013926 84 ASSPLQVKYADGE 96 (434)
Q Consensus 84 ~~~~i~~~~~~~~ 96 (434)
+.|+|.++...
T Consensus 92 --r~l~V~~a~~~ 102 (112)
T 1x4f_A 92 --RCVKVDLSEKY 102 (112)
T ss_dssp --SCCEEEEECSC
T ss_pred --EEEEEEECccc
Confidence 77888777643
No 265
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.61 E-value=1.1e-15 Score=114.28 Aligned_cols=81 Identities=19% Similarity=0.299 Sum_probs=72.8
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
.+.++|||+|||+++++++|+++|+.||.|.+|.+..++.++.++ ||||+|.+.++|++|+ .+|+.. +.| +.|+|
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~-~~g--~~l~V 79 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESL-FRG--RQIKV 79 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCE-ETT--EECEE
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCE-ECC--cEEEE
Confidence 457899999999999999999999999999999999998888888 9999999999999999 898876 666 77888
Q ss_pred eccCcc
Q 013926 91 KYADGE 96 (434)
Q Consensus 91 ~~~~~~ 96 (434)
.++...
T Consensus 80 ~~a~~~ 85 (89)
T 3ucg_A 80 IPKRTN 85 (89)
T ss_dssp EETTTT
T ss_pred EEccCC
Confidence 777643
No 266
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.3e-15 Score=114.13 Aligned_cols=85 Identities=21% Similarity=0.217 Sum_probs=73.7
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHH----HHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLL----AMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~----~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
.....+.++|||+|||+++++++|+ ++|++||.|.+|.+..++.+ .+||||+|.+.++|++|++.||+.. +.|
T Consensus 3 s~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~-~~g 79 (96)
T 2dgx_A 3 SGSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYK-IGS 79 (96)
T ss_dssp CCCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEE-ETT
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCE-ECC
Confidence 3445677899999999999999999 99999999999999998776 2399999999999999999999876 556
Q ss_pred CCCceeeeccCccc
Q 013926 84 ASSPLQVKYADGEL 97 (434)
Q Consensus 84 ~~~~i~~~~~~~~~ 97 (434)
+.|+|.++....
T Consensus 80 --r~l~V~~a~~~~ 91 (96)
T 2dgx_A 80 --KKILVSLATGAS 91 (96)
T ss_dssp --EEEEEEECCCSS
T ss_pred --eEEEEEEcCCCC
Confidence 788888876543
No 267
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.61 E-value=6.1e-15 Score=110.96 Aligned_cols=83 Identities=24% Similarity=0.308 Sum_probs=72.2
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
...+.++|||+|||+++++++|+++|+.||.|..|.+..+ ++.++ ||||+|.+.++|++|++.||+.. +.| +.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g--~~l 78 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMK-LSG--REI 78 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCC-BTT--BCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--cEE
Confidence 4567899999999999999999999999999999999884 56677 99999999999999999999876 666 677
Q ss_pred eeeccCccc
Q 013926 89 QVKYADGEL 97 (434)
Q Consensus 89 ~~~~~~~~~ 97 (434)
+|.++....
T Consensus 79 ~v~~a~~~~ 87 (92)
T 2dgv_A 79 DVRIDRNAS 87 (92)
T ss_dssp CCEECSCCS
T ss_pred EEEEcCCCC
Confidence 777776443
No 268
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=3.3e-15 Score=115.86 Aligned_cols=83 Identities=20% Similarity=0.311 Sum_probs=72.8
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
.....+.++|||+|||+++++++|+++|+.||.|.+|.++.++ ++.++ ||||+|.+.++|++|++.||+.. +.| +
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 98 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVP-LDG--R 98 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCE-eCC--c
Confidence 3455678999999999999999999999999999999999998 77777 99999999999999999999876 566 6
Q ss_pred ceeeeccC
Q 013926 87 PLQVKYAD 94 (434)
Q Consensus 87 ~i~~~~~~ 94 (434)
.|+|.++.
T Consensus 99 ~l~V~~a~ 106 (107)
T 3ulh_A 99 PMNIQLVT 106 (107)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEeC
Confidence 77776653
No 269
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=116.93 Aligned_cols=87 Identities=26% Similarity=0.321 Sum_probs=76.6
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
......+.++|||+|||+++++++|+++|+.||.|.+|.++.++.++.++ ||||+|.+.++|++||+. |+.. +.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~-~~g-- 84 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHT-LDG-- 84 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEE-ETT--
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCe-ECC--
Confidence 34567888999999999999999999999999999999999999888888 999999999999999999 7654 666
Q ss_pred CceeeeccCccc
Q 013926 86 SPLQVKYADGEL 97 (434)
Q Consensus 86 ~~i~~~~~~~~~ 97 (434)
+.|.|.++.++.
T Consensus 85 ~~l~V~~a~~~~ 96 (105)
T 2dh8_A 85 RNIDPKPCTPRG 96 (105)
T ss_dssp EEEBCCCSCCSS
T ss_pred EEEEEEEccCCC
Confidence 677777776543
No 270
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=3.8e-15 Score=119.20 Aligned_cols=85 Identities=24% Similarity=0.331 Sum_probs=75.6
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
....+.++|||+|||+++|+++|+++|+.||.|..|.++.++.++.++ ||||+|.+.++|++|++.||+.. +.| +.
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 93 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD-LMG--QP 93 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCB-SSS--SB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCe-eCC--eE
Confidence 445667899999999999999999999999999999999998888888 99999999999999999999876 566 77
Q ss_pred eeeeccCcc
Q 013926 88 LQVKYADGE 96 (434)
Q Consensus 88 i~~~~~~~~ 96 (434)
|.|.++...
T Consensus 94 l~v~~a~~~ 102 (126)
T 3ex7_B 94 ISVDWCFVR 102 (126)
T ss_dssp CEEEESEES
T ss_pred EEEEEecCC
Confidence 777777544
No 271
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=113.05 Aligned_cols=81 Identities=14% Similarity=0.359 Sum_probs=71.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCc-cc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA-SR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~-~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
..++|||+|||+++++++|+++|+.||.|.+|.+..++.++. ++ ||||+|.+.++|++|++.||+.. +.| +.|.|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v 79 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ-IDG--QEITA 79 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCe-ECC--eEEEE
Confidence 568999999999999999999999999999999999887655 55 99999999999999999999876 666 67777
Q ss_pred eccCcc
Q 013926 91 KYADGE 96 (434)
Q Consensus 91 ~~~~~~ 96 (434)
.++.+.
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 766543
No 272
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=124.61 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=72.4
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccC--ceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g--~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
...++|||+|||+++|+++|+++|+.|| .|.+|+++.++.++.++ ||||+|.+.++|++||+.||+.. +.| +.|
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~-~~G--r~l 129 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKV-LNG--EKV 129 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCE-ETT--EEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--eEe
Confidence 3568999999999999999999999999 99999999999999988 99999999999999999999876 666 778
Q ss_pred eeeccCc
Q 013926 89 QVKYADG 95 (434)
Q Consensus 89 ~~~~~~~ 95 (434)
.|.++..
T Consensus 130 ~V~~a~~ 136 (156)
T 3n9u_C 130 DVRPATR 136 (156)
T ss_dssp EEEECCH
T ss_pred EEEEcCC
Confidence 8877764
No 273
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.60 E-value=1e-15 Score=116.02 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=70.6
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
......++|||+|||+++++++|+++|.+||.|..+.++.++.++.++ ||||+|.+.++|++|++.||+.. +.| +.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--r~ 86 (95)
T 2ek1_A 10 SGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP-IGS--RK 86 (95)
T ss_dssp -----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCe-ECC--cE
Confidence 445567999999999999999999999999999999999988888888 99999999999999999999876 566 67
Q ss_pred eeeeccC
Q 013926 88 LQVKYAD 94 (434)
Q Consensus 88 i~~~~~~ 94 (434)
|+|.++.
T Consensus 87 l~v~~a~ 93 (95)
T 2ek1_A 87 VKLSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEecc
Confidence 7776654
No 274
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=122.95 Aligned_cols=86 Identities=23% Similarity=0.416 Sum_probs=75.2
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeE--EEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccC----c
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--VNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNK----K 79 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~--~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~----~ 79 (434)
....+...++|||+|||+++|+++|+++|+.||.|.. |+++.++.++.++ ||||+|.+. +|.+|+..||+. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3445577899999999999999999999999999966 9999999889988 999999999 999999999987 5
Q ss_pred cCCCCCCceeeeccCcc
Q 013926 80 TLPGASSPLQVKYADGE 96 (434)
Q Consensus 80 ~~~g~~~~i~~~~~~~~ 96 (434)
+.| +.|+|.++...
T Consensus 95 -~~g--r~l~V~~a~~~ 108 (131)
T 2m2b_A 95 -IDG--KTINVEFAKGS 108 (131)
T ss_dssp -GGG--CCCCCEECCCS
T ss_pred -CCC--EEEEEEECCCC
Confidence 556 67777777654
No 275
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.3e-15 Score=115.33 Aligned_cols=87 Identities=23% Similarity=0.414 Sum_probs=74.4
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCC----
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLP---- 82 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~---- 82 (434)
+..+.+.++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++ ||||+|.+.++|++|++.||+..+-.
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 3455678999999999999999999999999999999999998 77777 99999999999999999999876421
Q ss_pred -CCCCceeeeccCc
Q 013926 83 -GASSPLQVKYADG 95 (434)
Q Consensus 83 -g~~~~i~~~~~~~ 95 (434)
...+++.+.++++
T Consensus 98 ~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 98 SAPTEPLLCKFSGP 111 (114)
T ss_dssp CCCSSCBEEEECCC
T ss_pred cCCCCceeEEccCC
Confidence 1236777777764
No 276
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.60 E-value=2e-15 Score=117.32 Aligned_cols=86 Identities=23% Similarity=0.320 Sum_probs=70.7
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
.....+.++|||+|||+++++++|+++|+.||.|.+|.++.++.++.++ ||||+|.+.++|++|++.++ ..+.| +
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~--~~l~g--~ 94 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR--HELDS--K 94 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC--EEETT--E
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC--CcCCC--E
Confidence 4456778999999999999999999999999999999999999888888 99999999999999999874 44777 7
Q ss_pred ceeeeccCccc
Q 013926 87 PLQVKYADGEL 97 (434)
Q Consensus 87 ~i~~~~~~~~~ 97 (434)
.+.|.++..+.
T Consensus 95 ~l~V~~a~~~~ 105 (109)
T 2rs2_A 95 TIDPKVAFPRR 105 (109)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEEccCCC
Confidence 77777776443
No 277
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=4.1e-15 Score=123.71 Aligned_cols=87 Identities=22% Similarity=0.348 Sum_probs=77.1
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
+....+.++|||+|||+++|+++|+++|+.||.|..|.++.++.++.++ ||||+|.+.++|++||+.||+.. +.| +
T Consensus 33 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~ 109 (156)
T 1h2v_Z 33 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTR-LDD--R 109 (156)
T ss_dssp CTTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSE-ETT--E
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECC--e
Confidence 3444678999999999999999999999999999999999999988888 99999999999999999999876 566 7
Q ss_pred ceeeeccCccc
Q 013926 87 PLQVKYADGEL 97 (434)
Q Consensus 87 ~i~~~~~~~~~ 97 (434)
.|.|.++....
T Consensus 110 ~l~V~~a~~~~ 120 (156)
T 1h2v_Z 110 IIRTDWDAGFK 120 (156)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEECCCCC
Confidence 78888876443
No 278
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.60 E-value=2e-15 Score=108.94 Aligned_cols=73 Identities=27% Similarity=0.403 Sum_probs=65.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeec
Q 013926 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 92 (434)
Q Consensus 16 ~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~ 92 (434)
+|||+|||+++++++|+++|++||+|.+|.+..++.++.++ ||||+|.+.++|++|++ +|+.. +.| +.+.+.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~-~~g--~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHE-INN--KMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCC-SSS--CCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCE-ECC--EEEEEEe
Confidence 58999999999999999999999999999999998888888 99999999999999998 77765 666 6666654
No 279
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.8e-15 Score=115.41 Aligned_cols=84 Identities=15% Similarity=0.229 Sum_probs=74.1
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
......++|||+|||+++++++|+++|..||.|..+.++.++.++.++ ||||+|.+.++|++|++.||+.. +.| +.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--~~ 86 (98)
T 2cqp_A 10 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP-IGS--RK 86 (98)
T ss_dssp CCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCE-ETT--EE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCe-eCC--eE
Confidence 345667899999999999999999999999999989889888888888 99999999999999999999875 666 77
Q ss_pred eeeeccCc
Q 013926 88 LQVKYADG 95 (434)
Q Consensus 88 i~~~~~~~ 95 (434)
|+|.++..
T Consensus 87 l~V~~a~~ 94 (98)
T 2cqp_A 87 VKLVLGSG 94 (98)
T ss_dssp CEEEESSC
T ss_pred EEEEEcCC
Confidence 77777653
No 280
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.59 E-value=1.4e-15 Score=133.39 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCCCC---------CHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCcee-
Q 013926 346 PPGANLFIYHIPQEF---------GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL- 415 (434)
Q Consensus 346 ~~~~~v~V~nLp~~~---------t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l- 415 (434)
...++|||+||+.++ ++++|+++|+.||+|.+|+|+.+ +|||||.|.+.++|+.|+++|||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 367899999999998 79999999999999999999853 78999999999999999999999999
Q ss_pred -----------CCeEEEEEEecCCcC
Q 013926 416 -----------GGKKLKVQLKRDNKQ 430 (434)
Q Consensus 416 -----------~g~~i~v~~a~~~~~ 430 (434)
.|+.|.|.||+.++.
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999998764
No 281
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=6.2e-15 Score=115.75 Aligned_cols=86 Identities=21% Similarity=0.251 Sum_probs=74.7
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
......+.++|||+|||+++++++|+++|..||.|.+|.++.++. +.++ ||||+|.+.++|++|++.||+.. +.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g-- 83 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQL-LFD-- 83 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCE-eCC--
Confidence 345567789999999999999999999999999999999999984 7777 99999999999999999999876 556
Q ss_pred CceeeeccCcc
Q 013926 86 SPLQVKYADGE 96 (434)
Q Consensus 86 ~~i~~~~~~~~ 96 (434)
+.|.|.++...
T Consensus 84 ~~l~v~~a~~~ 94 (114)
T 2do0_A 84 RPMHVKMDERA 94 (114)
T ss_dssp EECEEEECSCC
T ss_pred CEEEEEEcccC
Confidence 77777776543
No 282
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.5e-15 Score=110.22 Aligned_cols=75 Identities=27% Similarity=0.405 Sum_probs=67.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeecc
Q 013926 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 93 (434)
Q Consensus 15 ~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~ 93 (434)
++|||+|||+++++++|+++|++||+|.+|.+..++.++.++ ||||+|.+.++|++|++.++ ..+.| +.+.+.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~--~~~~g--~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR--HELDS--KTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT--CCCSS--CCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC--CccCC--EEEEEEec
Confidence 579999999999999999999999999999999998888888 99999999999999999987 44777 56666543
No 283
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.5e-15 Score=115.54 Aligned_cols=85 Identities=24% Similarity=0.338 Sum_probs=73.9
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhccCc-eeEEEEe-ecCCCCccc-eEEEEeCCHHHHHHHHHHhc-cCccCCCCCC
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNII-KDKTTRASR-CCFVICPSRQEADKAVNACH-NKKTLPGASS 86 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~~g~-v~~~~~~-~~~~~~~~~-~afV~f~~~~~A~~al~~~~-~~~~~~g~~~ 86 (434)
..+.++|||+|||+++++++|+++|..||. |.+|.++ .++.++.++ ||||+|.+.++|++|++.|| +...+.| +
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g--~ 82 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--H 82 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT--B
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC--C
Confidence 457899999999999999999999999998 9999998 788887888 99999999999999999995 3345777 7
Q ss_pred ceeeeccCccc
Q 013926 87 PLQVKYADGEL 97 (434)
Q Consensus 87 ~i~~~~~~~~~ 97 (434)
.|+|.++.+..
T Consensus 83 ~l~V~~a~~~~ 93 (109)
T 2dis_A 83 QIAVDWAEPEI 93 (109)
T ss_dssp CCEEEESCSSC
T ss_pred eEEEEEcCCCC
Confidence 78888877554
No 284
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=9.5e-15 Score=112.39 Aligned_cols=87 Identities=23% Similarity=0.248 Sum_probs=75.5
Q ss_pred ccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCC
Q 013926 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGA 84 (434)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~ 84 (434)
...+...+.++|||+|||+++++++|+++|+.||.|..|.++.++.++.++ ||||+|.+.++|++||+. +. .+.|
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~-~~~g- 82 (103)
T 2cqg_A 7 GVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RH-MIDG- 82 (103)
T ss_dssp SCSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CE-EETT-
T ss_pred CCCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CC-eeCC-
Confidence 345667788999999999999999999999999999999999999888888 999999999999999985 32 4666
Q ss_pred CCceeeeccCccc
Q 013926 85 SSPLQVKYADGEL 97 (434)
Q Consensus 85 ~~~i~~~~~~~~~ 97 (434)
+.|.|.++..+.
T Consensus 83 -~~l~v~~a~~~~ 94 (103)
T 2cqg_A 83 -RWCDCKLPNSKQ 94 (103)
T ss_dssp -EEEEEECCCTTC
T ss_pred -eEEEEEecCCCC
Confidence 777887776543
No 285
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-15 Score=119.76 Aligned_cols=84 Identities=23% Similarity=0.357 Sum_probs=74.1
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
.++...++|||+|||+++++++|+++|+.||.|.+|.++.++.++.++ ||||+|.+.++|++|| .||+.. +.| +.
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g--~~ 95 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQR-LLG--VP 95 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEE-ETT--EE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCE-eCC--eE
Confidence 344567899999999999999999999999999999999999888888 9999999999999999 998876 566 77
Q ss_pred eeeeccCcc
Q 013926 88 LQVKYADGE 96 (434)
Q Consensus 88 i~~~~~~~~ 96 (434)
|.|.++...
T Consensus 96 l~V~~a~~~ 104 (114)
T 2cq4_A 96 IIVQASQAE 104 (114)
T ss_dssp EEEEEHHHH
T ss_pred EEEEecCCC
Confidence 888776543
No 286
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=7.1e-15 Score=112.19 Aligned_cols=85 Identities=31% Similarity=0.448 Sum_probs=73.5
Q ss_pred cccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCC
Q 013926 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGA 84 (434)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~ 84 (434)
...+....+.++|||+|||+++++++|+++|++||.|..|.+.+++. ||||+|.+.++|++|++.||+.. +.|
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg-----~afV~f~~~~~a~~a~~~l~g~~-~~g- 78 (99)
T 2cpj_A 6 SGGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG-----FGFIRLETRTLAEIAKVELDNMP-LRG- 78 (99)
T ss_dssp SCCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTT-----EEEEECSSSHHHHHHHHHHTTCC-BTT-
T ss_pred CCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCC-----EEEEEECCHHHHHHHHHHhCCCE-eCC-
Confidence 34456677889999999999999999999999999999999987643 99999999999999999999876 666
Q ss_pred CCceeeeccCccc
Q 013926 85 SSPLQVKYADGEL 97 (434)
Q Consensus 85 ~~~i~~~~~~~~~ 97 (434)
+.|+|.++....
T Consensus 79 -~~l~v~~a~~~~ 90 (99)
T 2cpj_A 79 -KQLRVRFACHSA 90 (99)
T ss_dssp -BCCEEEESSCCS
T ss_pred -ceEEEEEcCCCC
Confidence 778888876543
No 287
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.58 E-value=1e-14 Score=116.26 Aligned_cols=84 Identities=21% Similarity=0.338 Sum_probs=74.3
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
....++++|||+|||+++++++|+++|+.||.|.+|.+..++ ++.++ ||||+|.+.++|++|++.+|+.. +.| +.
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~ 105 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVP-LDG--RP 105 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEE-SSS--CE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCE-ECC--cE
Confidence 345677899999999999999999999999999999999998 77777 99999999999999999999875 666 77
Q ss_pred eeeeccCcc
Q 013926 88 LQVKYADGE 96 (434)
Q Consensus 88 i~~~~~~~~ 96 (434)
|+|.++...
T Consensus 106 l~V~~a~~~ 114 (124)
T 2kt5_A 106 MDIQLVASQ 114 (124)
T ss_dssp EEEEEECCT
T ss_pred EEEEEeCCC
Confidence 888777644
No 288
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.58 E-value=2.9e-15 Score=114.56 Aligned_cols=84 Identities=14% Similarity=0.281 Sum_probs=68.6
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecC-CCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDK-TTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~-~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
.......++|||+|||+++++++|+++|+.|| |.+|.+..++ .++.++ ||||+|.+.++|++|+ .+|+.. +.|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~-~~g-- 87 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES-LGN-- 87 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCC-BTT--
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCE-ECC--
Confidence 44567789999999999999999999999999 9999999998 577777 9999999999999999 898876 666
Q ss_pred CceeeeccCcc
Q 013926 86 SPLQVKYADGE 96 (434)
Q Consensus 86 ~~i~~~~~~~~ 96 (434)
+.|+|.++...
T Consensus 88 ~~l~V~~a~~~ 98 (100)
T 2j76_E 88 RRIRVDVADQA 98 (100)
T ss_dssp BCCCCEECCCS
T ss_pred eEEEEEeccCC
Confidence 66777776543
No 289
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.9e-15 Score=118.04 Aligned_cols=86 Identities=26% Similarity=0.389 Sum_probs=75.2
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
.....+.++|||+|||+++++++|+++|..||.|..|.++.++.++.++ ||||+|.+.++|++||+. ++.. +.| +
T Consensus 21 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~-~~g--~ 96 (116)
T 1x4b_A 21 KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHS-IDG--R 96 (116)
T ss_dssp CCHHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEE-ETT--E
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcE-ECC--E
Confidence 3445567999999999999999999999999999999999999888888 999999999999999998 6654 666 7
Q ss_pred ceeeeccCccc
Q 013926 87 PLQVKYADGEL 97 (434)
Q Consensus 87 ~i~~~~~~~~~ 97 (434)
.|.|.++..+.
T Consensus 97 ~l~V~~a~~~~ 107 (116)
T 1x4b_A 97 VVEPKRAVARE 107 (116)
T ss_dssp EEEEECCSSCC
T ss_pred EEEEEECCCCc
Confidence 88888876554
No 290
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-14 Score=112.96 Aligned_cols=84 Identities=14% Similarity=0.375 Sum_probs=71.8
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
.....+.++|||+|||+++|+++|+++|+.||.|..|.+..+. .++ ||||+|.+.++|++|++.||+.. +.| +
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~ 89 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR---GGPPFAFVEFEDPRDAEDAVYGRDGYD-YDG--Y 89 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS---SSSCCEEEEESCHHHHHHHHHHHTTCE-ETT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---CCCcEEEEEECCHHHHHHHHHHcCCCE-ECC--e
Confidence 3456678999999999999999999999999999999996643 345 99999999999999999999876 566 7
Q ss_pred ceeeeccCccc
Q 013926 87 PLQVKYADGEL 97 (434)
Q Consensus 87 ~i~~~~~~~~~ 97 (434)
.|+|.++....
T Consensus 90 ~l~V~~a~~~~ 100 (109)
T 1x4a_A 90 RLRVEFPRSGR 100 (109)
T ss_dssp ECEEECCCCCC
T ss_pred EEEEEEcccCC
Confidence 88888876543
No 291
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.7e-15 Score=115.22 Aligned_cols=85 Identities=24% Similarity=0.416 Sum_probs=73.6
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
......+.++|||+|||+++++++|+++|+.||.|.+|.+..++. .++ ||||+|.+.++|++|++.||+.. +.|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~-~~g-- 96 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTV-VEG-- 96 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCE-ETT--
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCE-ECC--
Confidence 455667889999999999999999999999999999999998864 255 99999999999999999999876 666
Q ss_pred CceeeeccCcc
Q 013926 86 SPLQVKYADGE 96 (434)
Q Consensus 86 ~~i~~~~~~~~ 96 (434)
+.++|.++..+
T Consensus 97 ~~l~V~~a~~~ 107 (109)
T 2err_A 97 RKIEVNNATAR 107 (109)
T ss_dssp EECEEEECCCS
T ss_pred EEEEEEECCCC
Confidence 77888777643
No 292
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.57 E-value=5.5e-15 Score=124.06 Aligned_cols=123 Identities=24% Similarity=0.358 Sum_probs=74.4
Q ss_pred EEeCCHHHHHHHHHHhccCccCCCCCCceeeecc---------------------CcccccCCCeEEEeCCCCCCcHHHH
Q 013926 60 VICPSRQEADKAVNACHNKKTLPGASSPLQVKYA---------------------DGELERLEHKLFIGMLPKNVSEAEV 118 (434)
Q Consensus 60 V~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~---------------------~~~~~~~~~~v~v~nlp~~~~~~~l 118 (434)
.+|.+.++|..|+..+++... ....+.....+. .+......++|||+|||..+++++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~-~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAK-HRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEI 89 (165)
T ss_dssp --------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHH
T ss_pred hhhhccccccccchhhccccc-cccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 678899999999998876542 211111211110 1111223568999999999999999
Q ss_pred HHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeeccChHHH
Q 013926 119 SALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKER 186 (434)
Q Consensus 119 ~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~~~~~~ 186 (434)
+++|+.||.|..|.++.+. +|.++|||||+|.+.++|.+|++.|++.. ++|+ .|.|.|+......
T Consensus 90 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g~--~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 90 QEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE-IMGQ--TIQVDWCFVKGPK 155 (165)
T ss_dssp HHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEEESEECC--
T ss_pred HHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCE-ECCE--EEEEEEecCCCCC
Confidence 9999999999999999885 78899999999999999999999999976 6776 6788888765443
No 293
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=8.6e-15 Score=109.60 Aligned_cols=80 Identities=26% Similarity=0.392 Sum_probs=70.4
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
..+..+.++|||+|||+++|+++|+++|+.||.|.+|.+.++ ||||+|.+.++|++|++.||+.. +.| +.
T Consensus 3 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-------~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 72 (90)
T 2dnp_A 3 SGSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQLNGKE-VKG--KR 72 (90)
T ss_dssp CCSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-------CEEEEESCHHHHHHHHHHHTTCE-ETT--EE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCE-ECC--cE
Confidence 456678899999999999999999999999999999999754 99999999999999999999876 566 77
Q ss_pred eeeeccCccc
Q 013926 88 LQVKYADGEL 97 (434)
Q Consensus 88 i~~~~~~~~~ 97 (434)
++|.++....
T Consensus 73 l~v~~a~~~~ 82 (90)
T 2dnp_A 73 INVELSTKGQ 82 (90)
T ss_dssp CEEEESCCCC
T ss_pred EEEEECCCCC
Confidence 8888776543
No 294
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-14 Score=110.12 Aligned_cols=83 Identities=19% Similarity=0.317 Sum_probs=70.6
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
....+.++|||+|||+++++++|+++|++||.|.+|.+..++. ||||+|.+.++|++|++.||+.. +.+..+.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g-----~afV~f~~~~~A~~A~~~l~g~~-~~~~g~~l 85 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS-----FAYIQYESLDAAQAACAKMRGFP-LGGPDRRL 85 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSC-----CEEEEESSHHHHHHHHHHHTTCB-CSSSSCBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCC-----EEEEEECCHHHHHHHHHHHCCCE-eCCCCcEE
Confidence 3456779999999999999999999999999999999886532 99999999999999999999876 55223788
Q ss_pred eeeccCccc
Q 013926 89 QVKYADGEL 97 (434)
Q Consensus 89 ~~~~~~~~~ 97 (434)
+|.++.++.
T Consensus 86 ~V~~a~~~~ 94 (97)
T 1why_A 86 RVDFAKSGP 94 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 888887553
No 295
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.57 E-value=4.8e-15 Score=108.57 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=60.2
Q ss_pred CceEEEcCCCCCC------CHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 14 RVKLFVGQVPKHM------TEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 14 ~~~l~v~nLp~~~------te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
+++|||+|||+++ ++++|+++|++||.|.+|.+. +.++.++ ||||+|.+.++|++|++.||+.. +.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~-~~g 74 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYK-LDK 74 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCC-CSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcc-cCC
Confidence 4799999999999 789999999999999999987 3566777 99999999999999999999876 555
No 296
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.7e-15 Score=117.65 Aligned_cols=85 Identities=20% Similarity=0.292 Sum_probs=72.9
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCce-eEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALV-DEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGA 84 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v-~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~ 84 (434)
+...+.+.++|||+|||+++|+++|+++|+.||.| ..|.++.++ ++.++ ||||+|.+.++|++||+. |+.. +.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~-~~g- 83 (114)
T 2cpy_A 8 EGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKK-LNG- 83 (114)
T ss_dssp CCSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEE-ETT-
T ss_pred CCCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCc-cCC-
Confidence 34456778999999999999999999999999999 889999998 77777 999999999999999988 6654 666
Q ss_pred CCceeeeccCcc
Q 013926 85 SSPLQVKYADGE 96 (434)
Q Consensus 85 ~~~i~~~~~~~~ 96 (434)
+.|.|.++...
T Consensus 84 -r~i~v~~a~~~ 94 (114)
T 2cpy_A 84 -REAFVHVVTLE 94 (114)
T ss_dssp -EEEEEEEECHH
T ss_pred -eEEEEEECCHH
Confidence 77777776543
No 297
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.57 E-value=3e-15 Score=119.42 Aligned_cols=84 Identities=20% Similarity=0.330 Sum_probs=74.3
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
.+.+.++|||+|||+++|+++|+++|+.||.|.+|.+..++.++.++ ||||+|.+.++|++|+ .+|+.. +.| +.|
T Consensus 32 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g--~~l 107 (124)
T 2jwn_A 32 KEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETV-FRG--RTI 107 (124)
T ss_dssp HHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCE-ETT--EEC
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCe-ECC--eEE
Confidence 44567999999999999999999999999999999999998888888 9999999999999999 788876 666 778
Q ss_pred eeeccCccc
Q 013926 89 QVKYADGEL 97 (434)
Q Consensus 89 ~~~~~~~~~ 97 (434)
+|.++....
T Consensus 108 ~V~~a~~~~ 116 (124)
T 2jwn_A 108 KVLPKRTNM 116 (124)
T ss_dssp EEEESSCCC
T ss_pred EEEECCCCC
Confidence 888776443
No 298
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.57 E-value=2.3e-15 Score=112.80 Aligned_cols=78 Identities=23% Similarity=0.387 Sum_probs=69.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeeecc
Q 013926 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 93 (434)
Q Consensus 15 ~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~ 93 (434)
++|||+|||+++++++|+++|+.||.|.+|.+..++.++.++ ||||+|.+.+ |.+|++.+|+.. +.| +.++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~-~~g--~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTD-FMG--RTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSC-CSS--SSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCE-ECC--eEEEEEEc
Confidence 689999999999999999999999999999999999888888 9999999999 999999999876 666 77777777
Q ss_pred Ccc
Q 013926 94 DGE 96 (434)
Q Consensus 94 ~~~ 96 (434)
...
T Consensus 78 ~~~ 80 (90)
T 2ki2_A 78 NPK 80 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 644
No 299
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9.7e-15 Score=112.41 Aligned_cols=82 Identities=15% Similarity=0.239 Sum_probs=68.7
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeE-EEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE-VNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~-~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
.......++|||+|||+++|++||+++|+.||.|.+ |.+..+ .++.++ ||||+|.+.++|++||+. |+.. +.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~-~~g-- 83 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKER-IGH-- 83 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCC-SSS--
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccch-hCC--
Confidence 344567899999999999999999999999999987 888887 567777 999999999999999998 6654 777
Q ss_pred CceeeeccC
Q 013926 86 SPLQVKYAD 94 (434)
Q Consensus 86 ~~i~~~~~~ 94 (434)
+.|+|..+.
T Consensus 84 r~i~v~~~~ 92 (104)
T 1wg5_A 84 RYIEIFKSS 92 (104)
T ss_dssp SCCEEEEEC
T ss_pred cEEEEEECC
Confidence 556665554
No 300
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=109.39 Aligned_cols=82 Identities=15% Similarity=0.265 Sum_probs=71.7
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
......++|||+|||+++++++|+++|+.| .|.+|.++.+ .++.++ ||||+|.+.++|++|++ +|+.. +.| +.
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~-~~g--r~ 78 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREY-MGG--RY 78 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEE-ETT--EE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCce-eCC--cE
Confidence 455678999999999999999999999999 8999999999 567777 99999999999999999 98876 666 67
Q ss_pred eeeeccCcc
Q 013926 88 LQVKYADGE 96 (434)
Q Consensus 88 i~~~~~~~~ 96 (434)
|+|.++..+
T Consensus 79 i~v~~a~~~ 87 (91)
T 2dgw_A 79 IEVFREKSG 87 (91)
T ss_dssp EEEEEESSC
T ss_pred EEEEECCcC
Confidence 787777644
No 301
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.1e-15 Score=112.51 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=67.9
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
.......++|||+|||+++|++||+++|+.||. .+|.++.++ ++.++ ||||+|.+.++|++||+ +|+. .+.+ +
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~-~~~g--r 82 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKA-NMQH--R 82 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSC-CSSS--S
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCC-eECC--c
Confidence 345567799999999999999999999999995 599999998 77788 99999999999999995 6664 4777 5
Q ss_pred ceeeeccC
Q 013926 87 PLQVKYAD 94 (434)
Q Consensus 87 ~i~~~~~~ 94 (434)
.|+|..+.
T Consensus 83 ~i~V~~~~ 90 (102)
T 1wez_A 83 YVELFLNS 90 (102)
T ss_dssp CCEEEEEC
T ss_pred EEEEEECC
Confidence 56665544
No 302
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=109.43 Aligned_cols=80 Identities=29% Similarity=0.456 Sum_probs=70.5
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
.....+.++|||+|||+++++++|+++|+.||.|.+|.+.++ ||||+|.+.++|++|++.||+.. +.| +.
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 73 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAVEAIRGLDNTE-FQG--KR 73 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-------EEEEEESCHHHHHHHHHHHTTEE-ETT--EE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCe-eCC--cE
Confidence 445678899999999999999999999999999999998754 99999999999999999999876 556 78
Q ss_pred eeeeccCccc
Q 013926 88 LQVKYADGEL 97 (434)
Q Consensus 88 i~~~~~~~~~ 97 (434)
++|.++....
T Consensus 74 l~V~~a~~~~ 83 (92)
T 2dgt_A 74 MHVQLSTSRL 83 (92)
T ss_dssp EEEEESSCCC
T ss_pred EEEEEccCCC
Confidence 8888876543
No 303
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=107.72 Aligned_cols=80 Identities=23% Similarity=0.451 Sum_probs=68.2
Q ss_pred ccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHh-ccCccCCCC
Q 013926 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC-HNKKTLPGA 84 (434)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~-~~~~~~~g~ 84 (434)
.....+.+.++|||+|||+++++++|+++|++||.|..|.+.+++. ||||+|.+.++|++|++.| |+.. +.|
T Consensus 4 ~~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg-----~afV~f~~~~~A~~a~~~l~~~~~-~~g- 76 (85)
T 2ytc_A 4 GSSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQ-----CAFIQFATRQAAEVAAEKSFNKLI-VNG- 76 (85)
T ss_dssp CCCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGT-----EEEEEESSHHHHHHHHHTTTTTCE-ETT-
T ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCC-----EEEEEECCHHHHHHHHHHhcCCee-ECC-
Confidence 3445567889999999999999999999999999999999987543 9999999999999999998 6554 666
Q ss_pred CCceeeecc
Q 013926 85 SSPLQVKYA 93 (434)
Q Consensus 85 ~~~i~~~~~ 93 (434)
+.++|.++
T Consensus 77 -~~l~v~~a 84 (85)
T 2ytc_A 77 -RRLNVKWG 84 (85)
T ss_dssp -EECCEEEC
T ss_pred -CEEEEEec
Confidence 66777664
No 304
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.56 E-value=4.6e-15 Score=119.22 Aligned_cols=81 Identities=11% Similarity=0.135 Sum_probs=70.6
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCc---eeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCC
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFAL---VDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGA 84 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~---v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~ 84 (434)
.+..+.++|||+|||+++|++||+++|+.||. |.+|.++.++. ++++ ||||+|.+.++|++||+ +|+.. +.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~-l~g- 114 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRES-MGH- 114 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEE-SSS-
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCE-ECC-
Confidence 34566899999999999999999999999999 89999999987 7777 99999999999999999 88765 666
Q ss_pred CCceeeeccC
Q 013926 85 SSPLQVKYAD 94 (434)
Q Consensus 85 ~~~i~~~~~~ 94 (434)
+.|+|..+.
T Consensus 115 -r~i~V~~a~ 123 (136)
T 2hgl_A 115 -RYIEVFKSH 123 (136)
T ss_dssp -SEEEEEECC
T ss_pred -EEEEEEECC
Confidence 667776654
No 305
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=5.2e-15 Score=115.41 Aligned_cols=87 Identities=15% Similarity=0.288 Sum_probs=75.5
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHH---HHHhccCceeEEEEeecCCCC---ccc-eEEEEeCCHHHHHHHHHHhccCcc
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLL---AMFKEFALVDEVNIIKDKTTR---ASR-CCFVICPSRQEADKAVNACHNKKT 80 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~---~~f~~~g~v~~~~~~~~~~~~---~~~-~afV~f~~~~~A~~al~~~~~~~~ 80 (434)
.......++|||+|||+++++++|+ ++|++||.|.+|.+..++.++ .++ ||||+|.+.++|++||+.||+..
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~- 87 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV- 87 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE-
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE-
Confidence 4456678999999999999999999 999999999999999887643 344 99999999999999999999886
Q ss_pred CCCCCCceeeeccCccc
Q 013926 81 LPGASSPLQVKYADGEL 97 (434)
Q Consensus 81 ~~g~~~~i~~~~~~~~~ 97 (434)
+.| +.|+|.++..+.
T Consensus 88 ~~g--r~l~V~~a~~k~ 102 (111)
T 2cpi_A 88 VDG--RTLKASLGTTKY 102 (111)
T ss_dssp ETT--EEEEEESCCCCS
T ss_pred ECC--EEEEEEeccccc
Confidence 566 788888887554
No 306
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.5e-14 Score=107.03 Aligned_cols=78 Identities=31% Similarity=0.523 Sum_probs=68.6
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCcee
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 89 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~ 89 (434)
...+.++|||+|||+++++++|+++|+.||.|..|.+.+ +||||+|.+.++|++|++.+|+.. +.| +.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-------g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~ 73 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK-------NYGFVHIEDKTAAEDAIRNLHHYK-LHG--VNIN 73 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEET-------TEEEEEESSHHHHHHHHHHHTTCB-CSS--CBCE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhcCCc-cCC--cEEE
Confidence 456789999999999999999999999999999999872 299999999999999999999876 666 7788
Q ss_pred eeccCccc
Q 013926 90 VKYADGEL 97 (434)
Q Consensus 90 ~~~~~~~~ 97 (434)
|.++....
T Consensus 74 v~~a~~~~ 81 (90)
T 2dnq_A 74 VEASKNKS 81 (90)
T ss_dssp EECSSCCC
T ss_pred EEECCCCC
Confidence 88876544
No 307
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.56 E-value=4.5e-15 Score=114.96 Aligned_cols=83 Identities=13% Similarity=0.210 Sum_probs=71.1
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCc---eeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFAL---VDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLP 82 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~---v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~ 82 (434)
...+....++|||+|||+++|++||+++|+.||. |..|.++.++. +.++ ||||+|.+.++|++||+ +|+.. +.
T Consensus 4 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~-~~ 80 (107)
T 2lmi_A 4 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMY-MG 80 (107)
T ss_dssp CCCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCC-SS
T ss_pred CcCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcce-eC
Confidence 3455678899999999999999999999999998 89999999987 7777 99999999999999999 87754 77
Q ss_pred CCCCceeeeccC
Q 013926 83 GASSPLQVKYAD 94 (434)
Q Consensus 83 g~~~~i~~~~~~ 94 (434)
| +.|+|.++.
T Consensus 81 g--r~i~V~~a~ 90 (107)
T 2lmi_A 81 Q--RYVEVYEIN 90 (107)
T ss_dssp S--SCCCCEECC
T ss_pred C--eEEEEEECC
Confidence 7 566666554
No 308
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=113.49 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=67.7
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCcee
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 89 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~ 89 (434)
.+...++|||+|||+++++++|+++|+.||.|..|.+...+. ||||+|.+.++|++|++.||+.. +.| +.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g-----~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~ 77 (111)
T 1whx_A 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGI-----TAIVEFLEPLEARKAFRHLAYSK-FHH--VPLY 77 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSS-----CEEEEESCHHHHHHHHHHHTTCB-SSS--SBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCC-----EEEEEeCCHHHHHHHHHHhCCCE-ECC--eEEE
Confidence 345678999999999999999999999999999999875433 99999999999999999999876 556 7788
Q ss_pred eeccCc
Q 013926 90 VKYADG 95 (434)
Q Consensus 90 ~~~~~~ 95 (434)
|.++..
T Consensus 78 V~~a~~ 83 (111)
T 1whx_A 78 LEWAPI 83 (111)
T ss_dssp EEEEET
T ss_pred EEECCC
Confidence 877753
No 309
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=118.70 Aligned_cols=82 Identities=23% Similarity=0.362 Sum_probs=73.2
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
.....+.++|||+|||+++++++|+++|+.||.|..+.+..++.++.++ ||||+|.+.++|++|++.||+.. +.| +
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 133 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFG--R 133 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEE-ETT--E
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCE-ECC--E
Confidence 4456678999999999999999999999999999999999998888888 99999999999999999998876 556 6
Q ss_pred ceeeec
Q 013926 87 PLQVKY 92 (434)
Q Consensus 87 ~i~~~~ 92 (434)
.|+|.+
T Consensus 134 ~l~v~~ 139 (140)
T 2ku7_A 134 TIRVNL 139 (140)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 666665
No 310
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.6e-15 Score=118.84 Aligned_cols=82 Identities=15% Similarity=0.215 Sum_probs=70.5
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
....+.++|||+|||+++|+++|+++|+.||.|.++.++.+..++.++ ||||+|.+.++|++||+ +|+.. +.| +.
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~-~~g--r~ 95 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQY-MGN--RF 95 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBC-STT--SC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCe-ECC--cE
Confidence 345567999999999999999999999999999987777777788888 99999999999999999 88765 677 66
Q ss_pred eeeeccC
Q 013926 88 LQVKYAD 94 (434)
Q Consensus 88 i~~~~~~ 94 (434)
|.|.++.
T Consensus 96 i~V~~a~ 102 (124)
T 1wel_A 96 IQVHPIT 102 (124)
T ss_dssp BEEEEEC
T ss_pred EEEEECC
Confidence 7776665
No 311
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.55 E-value=9e-15 Score=112.81 Aligned_cols=83 Identities=16% Similarity=0.172 Sum_probs=71.0
Q ss_pred cCccCCceEEEcCCCCCC------CHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccC
Q 013926 9 KSSEERVKLFVGQVPKHM------TEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTL 81 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~------te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~ 81 (434)
.....+++|||+|||+++ |+++|+++|+.||.|.+|.+. +.++.++ ||||+|.+.++|++|++.||+.. +
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~-~ 86 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYK-L 86 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEE-C
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcc-c
Confidence 344557899999999999 889999999999999999987 3567777 99999999999999999999976 5
Q ss_pred CCCCC-ceeeeccCcc
Q 013926 82 PGASS-PLQVKYADGE 96 (434)
Q Consensus 82 ~g~~~-~i~~~~~~~~ 96 (434)
.| + .++|.++...
T Consensus 87 ~g--~~~l~V~~a~~~ 100 (105)
T 2nlw_A 87 DK--QHTFRVNLFTDF 100 (105)
T ss_dssp ST--TCEEEEECSCCC
T ss_pred CC--CceEEEEEcchH
Confidence 56 5 7888877643
No 312
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.3e-14 Score=111.20 Aligned_cols=82 Identities=17% Similarity=0.158 Sum_probs=69.9
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCC---
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGAS--- 85 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~--- 85 (434)
......++|||+|||+++++++|+++|+.||.|..|.++.+ +||||+|.+.++|++||+.||+.. +.|..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~-~~g~~~~~ 82 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTK-FRSHEGET 82 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEE-EECTTSCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCC-ccCCcCcc
Confidence 34466899999999999999999999999999999999887 399999999999999999999876 44422
Q ss_pred CceeeeccCccc
Q 013926 86 SPLQVKYADGEL 97 (434)
Q Consensus 86 ~~i~~~~~~~~~ 97 (434)
+.|+|.++....
T Consensus 83 ~~i~V~~a~~~~ 94 (108)
T 1x4c_A 83 AYIRVKVDGPRS 94 (108)
T ss_dssp EEEEEEESSCCS
T ss_pred eEEEEEeCCCCC
Confidence 677887776543
No 313
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.55 E-value=2.1e-15 Score=115.60 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=62.2
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 013926 353 IYHIPQEFGDQELGNAF------------QAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 420 (434)
Q Consensus 353 V~nLp~~~t~~~L~~~F------------~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i 420 (434)
+.||+..+++++|++.| ++||.|.+|+|++++ +++++|||||.|.+.++|++|++.|||+.++||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 44555556666666555 999999999999886 58999999999999999999999999999999999
Q ss_pred EEEEe
Q 013926 421 KVQLK 425 (434)
Q Consensus 421 ~v~~a 425 (434)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 314
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.6e-14 Score=110.66 Aligned_cols=79 Identities=22% Similarity=0.506 Sum_probs=68.0
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
......++|||+|||+++++++|+++|+.||.|.+|.+.+.+. ||||+|.+.++|.+|++.||+.. +.| +.|
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g-----~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l 93 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKG-----CCFIKYDTHEQAAVCIVALANFP-FQG--RNL 93 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTT-----EEEEECSSHHHHHHHHHHHTTCE-ETT--EEC
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCC-----EEEEEECCHHHHHHHHHHhCCCe-ECC--eEE
Confidence 3445679999999999999999999999999999999984432 99999999999999999999876 556 777
Q ss_pred eeeccCc
Q 013926 89 QVKYADG 95 (434)
Q Consensus 89 ~~~~~~~ 95 (434)
+|.++.+
T Consensus 94 ~V~~a~~ 100 (101)
T 2la4_A 94 RTGWGKE 100 (101)
T ss_dssp CCCBCCC
T ss_pred EEEeccC
Confidence 7777653
No 315
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.54 E-value=2.9e-15 Score=144.82 Aligned_cols=80 Identities=23% Similarity=0.493 Sum_probs=72.7
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEee
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 179 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~ 179 (434)
.++|||+|||..+|+++|.++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+||+.||+.. |+|. .|.|.+
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~-i~gr--~i~V~~ 178 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK-IDGR--RVLVDV 178 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE-ECCE--EEEEEE
Confidence 5799999999999999999999999999999999885 78899999999999999999999999986 6777 678888
Q ss_pred ccCh
Q 013926 180 ADTE 183 (434)
Q Consensus 180 a~~~ 183 (434)
+...
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred eCCC
Confidence 8643
No 316
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=108.78 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=71.6
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEE-EEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEV-NIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~-~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
........++|||+|||+++++++|+++|+.||.|.+| .++.++.++ .|||+|.+.++|++|++.||+.. +.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~---~afV~f~~~~~a~~Ai~~l~g~~-~~g-- 81 (96)
T 2e44_A 8 SVPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA---VVNVTYSSKDQARQALDKLNGFQ-LEN-- 81 (96)
T ss_dssp CCCCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE---EEEEEESSHHHHHHHHHHHTTCB-CSS--
T ss_pred CCCCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC---EEEEEECCHHHHHHHHHHhCCCE-ECC--
Confidence 34445568999999999999999999999999999999 588876654 49999999999999999999876 556
Q ss_pred CceeeeccCcc
Q 013926 86 SPLQVKYADGE 96 (434)
Q Consensus 86 ~~i~~~~~~~~ 96 (434)
+.|+|.++.++
T Consensus 82 ~~l~V~~a~~~ 92 (96)
T 2e44_A 82 FTLKVAYIPDE 92 (96)
T ss_dssp CBCEEEECCCC
T ss_pred cEEEEEEcCcc
Confidence 77888877654
No 317
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.54 E-value=7.1e-15 Score=105.98 Aligned_cols=72 Identities=22% Similarity=0.421 Sum_probs=63.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceeee
Q 013926 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 91 (434)
Q Consensus 16 ~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~ 91 (434)
+|||+|||+++++++|+++|++||+|.+|.+..++.++.++ ||||+|.+.++|++|++. ++.. +.| +.+.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~-~~g--~~l~v~ 73 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHN-VGL--SKCEIK 73 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCC-BTT--BCCCEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCe-ECC--EEEEEE
Confidence 58999999999999999999999999999999998888888 999999999999999986 5543 666 555544
No 318
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=3.5e-14 Score=112.74 Aligned_cols=83 Identities=11% Similarity=0.248 Sum_probs=69.8
Q ss_pred cCccCCceEEEcCCCCCCCHHHHH----HHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLL----AMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~----~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
....+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. ++.++ ||||+|.+.++|.+|++.|||.. +.|
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~-l~g 99 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYP-FQG 99 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCC-CTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCE-eCC
Confidence 345678999999999999999976 6999999999988754 34556 99999999999999999999986 556
Q ss_pred CCCceeeeccCccc
Q 013926 84 ASSPLQVKYADGEL 97 (434)
Q Consensus 84 ~~~~i~~~~~~~~~ 97 (434)
+.|+|.++....
T Consensus 100 --r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 --NPLVITFSETPQ 111 (127)
T ss_dssp --SCCEEEECCCCC
T ss_pred --CEEEEEEccCcc
Confidence 788888876543
No 319
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4.4e-14 Score=107.31 Aligned_cols=80 Identities=20% Similarity=0.353 Sum_probs=67.2
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
.+....++|||+|||+++++++|+++|+.||.|. +.++.++ ++ ||||+|.+.++|++|++.||+.. +.| +.
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 85 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQG----PRRRAFLHYPDSAAAQQAVSCLQGLR-LGT--DT 85 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCC-SSS--SC
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCE-ECC--cE
Confidence 3445689999999999999999999999999987 6666542 33 99999999999999999999876 666 77
Q ss_pred eeeeccCcc
Q 013926 88 LQVKYADGE 96 (434)
Q Consensus 88 i~~~~~~~~ 96 (434)
|+|.++...
T Consensus 86 l~V~~a~~~ 94 (97)
T 2e5j_A 86 LRVALARQQ 94 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCCC
Confidence 888777654
No 320
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.9e-14 Score=110.87 Aligned_cols=81 Identities=16% Similarity=0.355 Sum_probs=71.1
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
......++|||+|||+++++++|+++|+.||.|..|.+..++. ||||+|.+.++|++|++.||+.. +.| +.|
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g-----~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l 91 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG-----YSFVRFSTHESAAHAIVSVNGTT-IEG--HVV 91 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTT-----EEEEEESSHHHHHHHHHHHTTCE-ETT--EEC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCC-----EEEEEECCHHHHHHHHHHcCCCE-ECC--cEE
Confidence 3556789999999999999999999999999999999988733 99999999999999999999875 666 778
Q ss_pred eeeccCccc
Q 013926 89 QVKYADGEL 97 (434)
Q Consensus 89 ~~~~~~~~~ 97 (434)
+|.++....
T Consensus 92 ~v~~a~~~~ 100 (109)
T 1x4g_A 92 KCYWGKESP 100 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 888877544
No 321
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.7e-14 Score=109.62 Aligned_cols=87 Identities=23% Similarity=0.315 Sum_probs=74.7
Q ss_pred cccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
........+.++|||+|||+++++++|+++|+.|+ .|.++.++.++.++ ||||+|.+.++|++||+.||+.. +.|
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g 81 (102)
T 2fc8_A 6 SGPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE-IDG 81 (102)
T ss_dssp CTTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE-ETT
T ss_pred CCCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCe-ECC
Confidence 34466778899999999999999999999999773 68888888888888 99999999999999999999876 666
Q ss_pred CCCceeeeccCccc
Q 013926 84 ASSPLQVKYADGEL 97 (434)
Q Consensus 84 ~~~~i~~~~~~~~~ 97 (434)
+.|.|.++..+.
T Consensus 82 --~~l~V~~a~~~~ 93 (102)
T 2fc8_A 82 --NKVTLDWAKPKG 93 (102)
T ss_dssp --EECEEEECCCCC
T ss_pred --eEEEEEEecCCC
Confidence 778888876544
No 322
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5.8e-14 Score=106.16 Aligned_cols=78 Identities=18% Similarity=0.182 Sum_probs=66.5
Q ss_pred CceEEEcCCC-------CCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 013926 348 GANLFIYHIP-------QEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 420 (434)
Q Consensus 348 ~~~v~V~nLp-------~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i 420 (434)
..+|.|.-.. .++++++|+++|++||+|.+|+|+ ++++|||||+|.+.++|.+|++.+++ +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4577777654 458999999999999999999997 36799999999999999999998554 689999
Q ss_pred EEEEecCCcCCC
Q 013926 421 KVQLKRDNKQNK 432 (434)
Q Consensus 421 ~v~~a~~~~~~~ 432 (434)
+|.|++.++..+
T Consensus 83 ~V~~a~~~~~~~ 94 (100)
T 2d9o_A 83 KISWLEGQPQDA 94 (100)
T ss_dssp EEECSSCCCCCC
T ss_pred EEEEccCCCCCC
Confidence 999999876543
No 323
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.1e-14 Score=107.91 Aligned_cols=84 Identities=26% Similarity=0.359 Sum_probs=71.6
Q ss_pred ccccccCccCCceEEEcCCCCCCCHHHHHHHHhcc--CceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccC
Q 013926 4 SKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEF--ALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTL 81 (434)
Q Consensus 4 ~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~--g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~ 81 (434)
.+.++....+.++|||+|||+++++++|+++|+.| |.|..|.+.+. ||||+|.+.++|++|++.||+.. +
T Consensus 5 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g-------~afV~f~~~~~A~~A~~~l~g~~-~ 76 (99)
T 2cpd_A 5 SSGDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD-------YAFVHFSNREDAVEAMKALNGKV-L 76 (99)
T ss_dssp CCCCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSS-------EEEEEESSHHHHHHHHHHHSSEE-E
T ss_pred ccccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCC-------eEEEEeCCHHHHHHHHHHhCCCE-e
Confidence 44556667788999999999999999999999999 89998886532 99999999999999999999876 5
Q ss_pred CCCCCceeeeccCccc
Q 013926 82 PGASSPLQVKYADGEL 97 (434)
Q Consensus 82 ~g~~~~i~~~~~~~~~ 97 (434)
.| +.|+|.++....
T Consensus 77 ~g--~~l~v~~a~~~~ 90 (99)
T 2cpd_A 77 DG--SPIEVTLAKPVD 90 (99)
T ss_dssp TT--EEEEEECCCCCC
T ss_pred CC--cEEEEEECCCCC
Confidence 56 788888876543
No 324
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.53 E-value=1.4e-14 Score=112.00 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=67.0
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccC-ceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g-~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
......++|||+|||+++++++|+++|++|| .|..+.+..++ ++ ||||+|.+.++|++||+.||+.. +.| +
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~----~rGfaFV~F~~~e~A~~Ai~~lng~~-l~G--r 95 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD----FDGTGALEFPSEEILVEALERLNNIE-FRG--S 95 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS----SSCCEEEEESSHHHHHHHHHHTTTEE-ETT--E
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC----CCCEEEEEECCHHHHHHHHHHcCCCE-ECC--e
Confidence 3456678999999999999999999999999 89999885432 33 99999999999999999999876 666 7
Q ss_pred ceeeeccCc
Q 013926 87 PLQVKYADG 95 (434)
Q Consensus 87 ~i~~~~~~~ 95 (434)
.|+|.++..
T Consensus 96 ~i~V~~a~~ 104 (111)
T 2jvr_A 96 VITVERDDN 104 (111)
T ss_dssp EEEEEESCC
T ss_pred EEEEEECCC
Confidence 788877653
No 325
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=4.9e-15 Score=113.56 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=70.6
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
...+.++|||+|||+++|+++|+++|+.||.|.. .++.++.++.++ ||||+|.+.++|++||+ ||+.. +.| +.|
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~-~~g--~~l 87 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLK-VFG--NEI 87 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCC-BTT--BCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcE-ECC--cEE
Confidence 4457899999999999999999999999999887 566666667777 99999999999999998 98876 556 778
Q ss_pred eeeccCccc
Q 013926 89 QVKYADGEL 97 (434)
Q Consensus 89 ~~~~~~~~~ 97 (434)
+|.++..+.
T Consensus 88 ~V~~a~~~~ 96 (101)
T 1fj7_A 88 KLEKPKGRD 96 (101)
T ss_dssp EEECCSCCC
T ss_pred EEEEcCCCC
Confidence 888876544
No 326
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=2.8e-14 Score=112.42 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=72.4
Q ss_pred cCCCeEEEeCCCCCCcHHHHHHhhhccCC---eeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceE
Q 013926 99 RLEHKLFIGMLPKNVSEAEVSALFSIYGT---IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 175 (434)
Q Consensus 99 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~---i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i 175 (434)
...++|||+|||+++++++|+++|+.||. |..|.++.+..++++|+|||+|.+.++|++|++ +++.. ++|+ .|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~-~~gr--~i 90 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRES-MGHR--YI 90 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEE-ETTE--EE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCe-ECCe--EE
Confidence 34578999999999999999999999998 899999998889999999999999999999999 89865 7777 67
Q ss_pred EEeeccCh
Q 013926 176 VVKWADTE 183 (434)
Q Consensus 176 ~v~~a~~~ 183 (434)
.|.++...
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 88887654
No 327
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.53 E-value=3e-14 Score=110.29 Aligned_cols=81 Identities=27% Similarity=0.462 Sum_probs=68.6
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
....+.+.++|||+|||+++++++|+++|++||.|.+|.+. + +||||+|.+.++|++|++.||+.. +.| +
T Consensus 24 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--k-----g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~ 93 (108)
T 2jvo_A 24 RQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--N-----GFAFVEFEEAESAAKAIEEVHGKS-FAN--Q 93 (108)
T ss_dssp ----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--T-----TEEEEECSSHHHHHHHHHHHTTCE-ETT--E
T ss_pred ccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--C-----CEEEEEECCHHHHHHHHHHcCCCE-ECC--e
Confidence 34566788999999999999999999999999999999988 2 299999999999999999999887 566 7
Q ss_pred ceeeeccCccc
Q 013926 87 PLQVKYADGEL 97 (434)
Q Consensus 87 ~i~~~~~~~~~ 97 (434)
.+.|.++....
T Consensus 94 ~l~V~~a~~~~ 104 (108)
T 2jvo_A 94 PLEVVYSKLPA 104 (108)
T ss_dssp ECEEESCSCCC
T ss_pred EEEEEEecCCC
Confidence 78888876543
No 328
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=109.73 Aligned_cols=84 Identities=18% Similarity=0.361 Sum_probs=70.2
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
......+.++|||+|||+++++++|+++|+.||.| .++.+ .++.++ ||||+|.+.++|++|++.||+.. +.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g-- 80 (101)
T 2fc9_A 8 NSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKRE-IEG-- 80 (101)
T ss_dssp CCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEE-ETT--
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCE-eCC--
Confidence 34466788999999999999999999999999976 45555 456666 99999999999999999999876 556
Q ss_pred CceeeeccCccc
Q 013926 86 SPLQVKYADGEL 97 (434)
Q Consensus 86 ~~i~~~~~~~~~ 97 (434)
+.|+|.++....
T Consensus 81 ~~l~v~~a~~~~ 92 (101)
T 2fc9_A 81 RAIRLELQGPRG 92 (101)
T ss_dssp EEEEEEECSSCC
T ss_pred eEEEEEEcCCCC
Confidence 778888876543
No 329
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.52 E-value=3.1e-14 Score=109.45 Aligned_cols=79 Identities=25% Similarity=0.381 Sum_probs=68.8
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
....+.++|||+|||+++|+++|+++|+.||.|.+|.+.++ ||||+|.+.++|++|++.||+.. +.| +.|
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l 75 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD-------YAFIHFDERDGAVKAMEEMNGKD-LEG--ENI 75 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS-------CEEEEESSHHHHHHHHHHHTTEE-ETT--EEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-------EEEEEeCCHHHHHHHHHHHCCCc-cCC--CEE
Confidence 34567899999999999999999999999999999998743 99999999999999999999876 556 788
Q ss_pred eeeccCccc
Q 013926 89 QVKYADGEL 97 (434)
Q Consensus 89 ~~~~~~~~~ 97 (434)
.|.++....
T Consensus 76 ~v~~a~~~~ 84 (103)
T 2dgu_A 76 EIVFAKPPD 84 (103)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCc
Confidence 888876544
No 330
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.52 E-value=1.8e-14 Score=127.17 Aligned_cols=80 Identities=16% Similarity=0.287 Sum_probs=71.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccC--ceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCcee
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 89 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~~g--~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~ 89 (434)
..++|||+|||+++|+++|+++|+.|| .|.+|+++.++.++.++ ||||+|.+.++|++||+.||+.. +.| +.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~-~~G--r~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE-LHG--QNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSC-BTT--BCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCe-ECC--EEeE
Confidence 567899999999999999999999999 99999999999999999 99999999999999999999876 666 7777
Q ss_pred eeccCc
Q 013926 90 VKYADG 95 (434)
Q Consensus 90 ~~~~~~ 95 (434)
|.++..
T Consensus 144 V~~a~~ 149 (229)
T 3q2s_C 144 VTPVNK 149 (229)
T ss_dssp EEECCH
T ss_pred EEECCC
Confidence 777653
No 331
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3.9e-14 Score=106.91 Aligned_cols=80 Identities=23% Similarity=0.298 Sum_probs=66.3
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
+.....++|||+|||+++|+++|+++|+.||.|.+| +.++.++. ||||+|.+.++|++|++ +|+.. +.| +.|
T Consensus 3 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~--~afV~f~~~~~a~~ai~-l~g~~-~~g--~~l 74 (94)
T 2e5g_A 3 SGSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV--FAIVEMGDVGAREAVLS-QSQHS-LGG--HRL 74 (94)
T ss_dssp SCCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC--EEEEEESSHHHHHHHHT-CSCCE-ETT--EEC
T ss_pred CccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc--EEEEEECCHHHHHHHHh-cCCeE-ECC--EEE
Confidence 344567899999999999999999999999999987 55555554 99999999999999999 98876 666 667
Q ss_pred eeeccCcc
Q 013926 89 QVKYADGE 96 (434)
Q Consensus 89 ~~~~~~~~ 96 (434)
.|.++...
T Consensus 75 ~V~~a~~~ 82 (94)
T 2e5g_A 75 RVRPREQK 82 (94)
T ss_dssp CCBCSCCS
T ss_pred EEEECCcC
Confidence 77666533
No 332
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=8.5e-15 Score=115.15 Aligned_cols=86 Identities=21% Similarity=0.308 Sum_probs=68.6
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
....++++|||+|||+++|+++|+++|..||.|..+.+..+..++.++ ||||+|.+.++|++|++.||+.. +.| +.
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--~~ 96 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYK-LYG--KI 96 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCB-CSS--CB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCE-eCC--cE
Confidence 344577999999999999999999999999998433222222256666 99999999999999999999876 566 77
Q ss_pred eeeeccCccc
Q 013926 88 LQVKYADGEL 97 (434)
Q Consensus 88 i~~~~~~~~~ 97 (434)
|.|.++....
T Consensus 97 l~v~~a~~~~ 106 (115)
T 2cpx_A 97 LVIEFGKNKK 106 (115)
T ss_dssp CEEEECCCCS
T ss_pred EEEEEccCCC
Confidence 8888876544
No 333
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.2e-14 Score=111.98 Aligned_cols=82 Identities=21% Similarity=0.310 Sum_probs=67.2
Q ss_pred ccCccCCceEEE--cCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCcc--CCC
Q 013926 8 KKSSEERVKLFV--GQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKT--LPG 83 (434)
Q Consensus 8 ~~~~~~~~~l~v--~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~--~~g 83 (434)
+....++++||| +||++++++++|+++|++||.|.+|.+..++. ||||+|.+.++|++|++.|||..+ ..+
T Consensus 19 ~~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rg-----faFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 19 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP-----YSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCS-----CEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred cCCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCC-----EEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 455678899999 77999999999999999999999998865422 999999999999999999999864 122
Q ss_pred CCCceeeeccC
Q 013926 84 ASSPLQVKYAD 94 (434)
Q Consensus 84 ~~~~i~~~~~~ 94 (434)
..+++.+.++.
T Consensus 94 ~g~~l~v~~a~ 104 (114)
T 2cq2_A 94 QKITLYLNFVE 104 (114)
T ss_dssp CEEECEEEEES
T ss_pred CCcEEEEEecc
Confidence 24666666554
No 334
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=6.1e-14 Score=108.21 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=69.6
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeec
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a 180 (434)
..+|||+|||+++++++|+++|+.| .|..|.|+.+.+|+++|+|||+|.+.++|++|+ .+++.. ++|+ .|.|..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~-~~gr--~i~V~~a 90 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRML-MIQR--YVEVSPA 90 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEE-ETTE--EEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCe-ECCe--EEEEEEC
Confidence 4689999999999999999999999 899999999988999999999999999999999 688865 7877 5777777
Q ss_pred cCh
Q 013926 181 DTE 183 (434)
Q Consensus 181 ~~~ 183 (434)
...
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 543
No 335
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=4.4e-14 Score=107.07 Aligned_cols=77 Identities=17% Similarity=0.364 Sum_probs=63.7
Q ss_pred cCccCCceEEEcCCCC-CCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 9 KSSEERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~-~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
.+..+.++|||+|||+ ++++++|+++|+.||.|.+|.+.+ +||||+|.+.++|++|++.||+.. +.| +.
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~-------g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~ 74 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN-------AFGFIQFDNPQSVRDAIECESQEM-NFG--KK 74 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEET-------TEEEEEESCHHHHHHHHHHHTCSS-CBT--TT
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeC-------CEEEEEECCHHHHHHHHHHcCCCe-eCC--cE
Confidence 4567899999999998 999999999999999999999841 299999999999999999999876 556 56
Q ss_pred eeeeccCc
Q 013926 88 LQVKYADG 95 (434)
Q Consensus 88 i~~~~~~~ 95 (434)
++|.++..
T Consensus 75 l~V~~a~~ 82 (96)
T 2kvi_A 75 LILEVSSS 82 (96)
T ss_dssp BCEEEEEC
T ss_pred EEEEEcCc
Confidence 66666543
No 336
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=1.3e-15 Score=120.05 Aligned_cols=86 Identities=19% Similarity=0.367 Sum_probs=75.6
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeE--------EEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCc
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--------VNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKK 79 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~ 79 (434)
.+..+.++|||+|||+++++++|+++|+.||.|.. |.++.++.++.++ ||||+|.+.++|++|++.||+..
T Consensus 2 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 2 QDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 34577899999999999999999999999999999 8999998888888 99999999999999999999876
Q ss_pred cCCCCCCceeeeccCccc
Q 013926 80 TLPGASSPLQVKYADGEL 97 (434)
Q Consensus 80 ~~~g~~~~i~~~~~~~~~ 97 (434)
+.| +.|+|.++..+.
T Consensus 82 -~~g--~~l~V~~a~~~~ 96 (116)
T 2lcw_A 82 -FSG--NPIKVSFATRRA 96 (116)
Confidence 566 677777776543
No 337
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=2.3e-14 Score=108.67 Aligned_cols=83 Identities=16% Similarity=0.270 Sum_probs=69.8
Q ss_pred ccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCC
Q 013926 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGA 84 (434)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~ 84 (434)
.......+.++|||+|||+++++++|+++|+.||.|..+ ..++.++ ||||+|.+.++|++|++.+|+.. +.|
T Consensus 8 ~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g- 80 (96)
T 1fjc_A 8 CTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE-IDG- 80 (96)
T ss_dssp TTTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEE-ETT-
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC-
Confidence 345566788999999999999999999999999988766 2356666 99999999999999999999876 566
Q ss_pred CCceeeeccCcc
Q 013926 85 SSPLQVKYADGE 96 (434)
Q Consensus 85 ~~~i~~~~~~~~ 96 (434)
+.|+|.++...
T Consensus 81 -~~l~v~~a~~~ 91 (96)
T 1fjc_A 81 -RSVSLYYTGEK 91 (96)
T ss_dssp -EEEEEEECSSS
T ss_pred -eEEEEEEcCCC
Confidence 77888877654
No 338
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=1.7e-13 Score=107.67 Aligned_cols=76 Identities=20% Similarity=0.175 Sum_probs=64.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccce-EEEEeCCHHHHHHHHHHhccCccCCCCCCceeeecc
Q 013926 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRC-CFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 93 (434)
Q Consensus 15 ~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~-afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~ 93 (434)
..|||+|||+.+|+++|+++|++||.|.+|.++.. .++ |||+|.+.++|++|++.|||..+. |..+.++|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~-g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIY-AGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCB-TTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEec-CCCeEEEEEEe
Confidence 44679999999999999999999999999998763 254 999999999999999999998854 44467888887
Q ss_pred Ccc
Q 013926 94 DGE 96 (434)
Q Consensus 94 ~~~ 96 (434)
...
T Consensus 100 k~~ 102 (124)
T 2e5i_A 100 RPT 102 (124)
T ss_dssp SCS
T ss_pred cCC
Confidence 644
No 339
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.49 E-value=1e-13 Score=117.23 Aligned_cols=83 Identities=22% Similarity=0.338 Sum_probs=73.4
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
...++++|||+|||+++++++|+++|+.||.|.+|.+..++ ++.++ ||||+|.+.++|++|++.||+.. +.| +.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~-l~G--r~l 159 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVP-LDG--RPM 159 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCB-CSS--SBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCE-ECC--EEE
Confidence 34567899999999999999999999999999999999998 77777 99999999999999999999875 666 777
Q ss_pred eeeccCcc
Q 013926 89 QVKYADGE 96 (434)
Q Consensus 89 ~~~~~~~~ 96 (434)
.|.++...
T Consensus 160 ~V~~a~~~ 167 (177)
T 2f3j_A 160 DIQLVASQ 167 (177)
T ss_dssp EEEEESSG
T ss_pred EEEEecCC
Confidence 77777644
No 340
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.49 E-value=2.8e-14 Score=108.44 Aligned_cols=82 Identities=16% Similarity=0.365 Sum_probs=69.5
Q ss_pred CccCCceEEEcCCCCCCCHHHHH----HHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCC
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLL----AMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGA 84 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~----~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~ 84 (434)
+..++++|||+|||+++++++|+ ++|+.||.|.+|.+.. ++.++ ||||+|.+.++|++|++.||+.. +.|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g- 78 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFP-FYD- 78 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCE-ETT-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCE-ECC-
Confidence 35678999999999999999999 9999999999998874 34455 99999999999999999999976 556
Q ss_pred CCceeeeccCccc
Q 013926 85 SSPLQVKYADGEL 97 (434)
Q Consensus 85 ~~~i~~~~~~~~~ 97 (434)
+.+++.++....
T Consensus 79 -~~l~v~~a~~~~ 90 (97)
T 1nu4_A 79 -KPMRIQYAKTDS 90 (97)
T ss_dssp -EECEEEECSSCC
T ss_pred -cEEEEEEccCCC
Confidence 788888876543
No 341
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.49 E-value=3.6e-14 Score=112.08 Aligned_cols=80 Identities=16% Similarity=0.207 Sum_probs=66.5
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCcee--EEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVD--EVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~--~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
......++|||+|||+++|++||+++|+.|+ |. +|.++.++. ++++ ||||+|.+.++|++||+. ++ ..+.|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~~-i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~-~~l~g-- 110 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGLE-IVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HK-ERIGH-- 110 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TT-CCBTT--
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCC-ceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CC-CEECC--
Confidence 3445678999999999999999999999994 66 899999887 7777 999999999999999986 45 45777
Q ss_pred CceeeeccC
Q 013926 86 SPLQVKYAD 94 (434)
Q Consensus 86 ~~i~~~~~~ 94 (434)
+.|+|..+.
T Consensus 111 R~I~V~~a~ 119 (126)
T 2hgm_A 111 RYIEVFKSS 119 (126)
T ss_dssp BCCCCEEEC
T ss_pred EEEEEEECC
Confidence 556665543
No 342
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.9e-14 Score=111.68 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=68.7
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCe----eEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEE
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTI----KDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 176 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i----~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~ 176 (434)
..+|||+|||+++|+++|+++|+.||.| ..|.|+.+.+|+++|+|||+|.+.++|++|++. ++. .++++ .|.
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~-~l~gR--~i~ 98 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKD-LLGKR--YIE 98 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTE-ESSSC--EEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCC-eeCCe--EEE
Confidence 5789999999999999999999999975 689999888999999999999999999999986 775 47887 466
Q ss_pred EeeccCh
Q 013926 177 VKWADTE 183 (434)
Q Consensus 177 v~~a~~~ 183 (434)
|..+..+
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 6666543
No 343
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.49 E-value=1.9e-14 Score=116.04 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=65.2
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
......++|||+|||+++||+||+++|+.|| |.+|.++.++. +.++ ||||+|.+.++|++|| .+|+. .+.+ +.
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~-~l~g--R~ 114 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRA-NMQH--RY 114 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSC-SSSS--CC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCC-EECC--EE
Confidence 3456678999999999999999999999999 67999999987 7777 9999999999999999 67665 4777 45
Q ss_pred eeeeccC
Q 013926 88 LQVKYAD 94 (434)
Q Consensus 88 i~~~~~~ 94 (434)
|+|..+.
T Consensus 115 i~V~~a~ 121 (139)
T 2hgn_A 115 IELFLNS 121 (139)
T ss_dssp CCCEECC
T ss_pred EEEEECC
Confidence 5555544
No 344
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.49 E-value=9e-14 Score=108.22 Aligned_cols=76 Identities=18% Similarity=0.373 Sum_probs=65.4
Q ss_pred CccCCceEEEcCCCCC-CCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 10 SSEERVKLFVGQVPKH-MTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~-~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
.....++|||+|||++ +++++|+++|+.||.|.+|.+ .+ +||||+|.+.++|++|++.||+.. +.| +.|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~-----g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l 92 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HK-----GYAFVQYSNERHARAAVLGENGRV-LAG--QTL 92 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ET-----TEEEEECSSSHHHHHHHHHHTTCE-ETT--EEC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eC-----CEEEEEECCHHHHHHHHHHcCCCE-ECC--eEE
Confidence 4445689999999999 999999999999999999998 11 299999999999999999999876 566 677
Q ss_pred eeeccCc
Q 013926 89 QVKYADG 95 (434)
Q Consensus 89 ~~~~~~~ 95 (434)
+|.++..
T Consensus 93 ~V~~a~~ 99 (110)
T 1wf1_A 93 DINMAGE 99 (110)
T ss_dssp CEEESCC
T ss_pred EEEECCC
Confidence 7777753
No 345
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.49 E-value=1.1e-13 Score=104.88 Aligned_cols=78 Identities=18% Similarity=0.374 Sum_probs=65.8
Q ss_pred ccCccCCceEEEcCCCC-CCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 8 KKSSEERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~-~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
.....++++|||+|||+ ++++++|+++|+.||.|.+|.+. .+||||+|.+.++|++|++.+|+.. +.| +
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~ 85 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEM-NFG--K 85 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSE-ETT--E
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCE-ECC--E
Confidence 34556789999999998 99999999999999999999983 1299999999999999999999876 556 7
Q ss_pred ceeeeccCc
Q 013926 87 PLQVKYADG 95 (434)
Q Consensus 87 ~i~~~~~~~ 95 (434)
.++|.++..
T Consensus 86 ~l~V~~a~~ 94 (97)
T 2xnq_A 86 KLILEVSSS 94 (97)
T ss_dssp ECEEEECCC
T ss_pred EEEEEecCC
Confidence 777777654
No 346
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.9e-14 Score=106.15 Aligned_cols=80 Identities=23% Similarity=0.348 Sum_probs=66.0
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCc-eeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~-v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
...+.++|||+|||+++|+++|+++|++||. |..+.+. .+. ||||+|.+.++|++|++.||+...+.| +.|
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-~~g-----~afV~f~~~~~A~~A~~~l~g~~~~~g--~~l 75 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-KSG-----YAFVDYPDQNWAIRAIETLSGKVELHG--KIM 75 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-ETT-----EEEECCSCHHHHHHHHHHHTTTCEETT--EEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-CCC-----EEEEEECCHHHHHHHHHHccCCeeECC--EEE
Confidence 4567899999999999999999999999999 6666553 222 999999999999999999998333666 788
Q ss_pred eeeccCccc
Q 013926 89 QVKYADGEL 97 (434)
Q Consensus 89 ~~~~~~~~~ 97 (434)
+|.++..+.
T Consensus 76 ~v~~a~~~~ 84 (93)
T 2cqh_A 76 EVDYSVSKK 84 (93)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 888876544
No 347
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.48 E-value=1.9e-13 Score=112.03 Aligned_cols=80 Identities=13% Similarity=0.179 Sum_probs=68.0
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
..-.+|||+||++.+|+++|+++|++||.|.+|.++.++ ++ ||||+|.+.++|++|++.|||..+.. ..+.|+|
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g-~g~~L~V 118 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRI 118 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSS-SCSCEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecC-CCcEEEE
Confidence 344678999999999999999999999999999987543 34 99999999999999999999988543 3477888
Q ss_pred eccCcc
Q 013926 91 KYADGE 96 (434)
Q Consensus 91 ~~~~~~ 96 (434)
.+++..
T Consensus 119 ~~Ak~~ 124 (164)
T 1sjr_A 119 DFSKLT 124 (164)
T ss_dssp EECSSS
T ss_pred EEecCC
Confidence 888754
No 348
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.6e-14 Score=112.03 Aligned_cols=66 Identities=21% Similarity=0.435 Sum_probs=59.5
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCC---Cccc-eEEEEeCCHHHHHHHHHHhc
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASR-CCFVICPSRQEADKAVNACH 76 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~---~~~~-~afV~f~~~~~A~~al~~~~ 76 (434)
.....++|||+|||+++|+++|+++|++||.|. +.++.++.+ +.++ ||||+|.+.++|++||+.++
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 345689999999999999999999999999999 888888776 5777 99999999999999999984
No 349
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=3.5e-13 Score=98.24 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=62.6
Q ss_pred cCCce-EEEcCCCCCCCHHH----HHHHHhcc-CceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 12 EERVK-LFVGQVPKHMTEAQ----LLAMFKEF-ALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 12 ~~~~~-l~v~nLp~~~te~~----l~~~f~~~-g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
.++.+ |||+|||+.+++++ |+++|++| |+|.+| ++ ++|||+|.+.++|++|++.||+.. +.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg--G~AfV~F~~~esA~~A~~~l~G~~-l~g-- 73 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG--CSAILRFINQDSAERAQKRMENED-VFG-- 73 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT--TCEEEEESSHHHHHHHHHHHTTCC-SSS--
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec--CEEEEEECCHHHHHHHHHHhcCCc-cCC--
Confidence 34555 99999999999998 45899999 499988 12 499999999999999999999988 445
Q ss_pred CceeeeccCcccc
Q 013926 86 SPLQVKYADGELE 98 (434)
Q Consensus 86 ~~i~~~~~~~~~~ 98 (434)
+++++.++.....
T Consensus 74 r~i~v~~A~~~sd 86 (96)
T 2diu_A 74 NRIIVSFTPKNRE 86 (96)
T ss_dssp SCCEEESSCCSCC
T ss_pred ceEEEEecCCCcc
Confidence 8888888875543
No 350
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.47 E-value=3.4e-14 Score=109.05 Aligned_cols=79 Identities=27% Similarity=0.378 Sum_probs=66.7
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCce
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPL 88 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i 88 (434)
.+...++|||+|||+++++++|+++|+.||.|.+|.+..++ ++.++ ||||+|.+.++|++|++ ++.. +.| +.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~-~~g--~~l 78 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQIN-FHG--KKL 78 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCE-ETT--EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCe-ECC--EEE
Confidence 45567999999999999999999999999999999999998 77777 99999999999999998 4443 555 455
Q ss_pred eeeccC
Q 013926 89 QVKYAD 94 (434)
Q Consensus 89 ~~~~~~ 94 (434)
.|.++.
T Consensus 79 ~v~~a~ 84 (102)
T 2xs2_A 79 KLGPAI 84 (102)
T ss_dssp EEEEEE
T ss_pred EEEECC
Confidence 544443
No 351
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.47 E-value=1.1e-13 Score=108.41 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=58.5
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCC
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGA 84 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~ 84 (434)
...++|||+|||+++++++|+++|+.||.|..|.++.+ +||||+|.+.++|++||+.||+.. +.|+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~-~~gr 79 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTK-FRSH 79 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCB-CCCT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCE-ECCc
Confidence 45789999999999999999999999999999999876 399999999999999999999876 5663
No 352
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.7e-13 Score=102.10 Aligned_cols=82 Identities=22% Similarity=0.343 Sum_probs=68.9
Q ss_pred ccccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCC
Q 013926 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGAS 85 (434)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~ 85 (434)
..++...+.++|||+|| ++|+++|+++|+.||.|.+|.+...+. ||||+|.+.++|++|++.||+.. +.|
T Consensus 7 ~~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g-----~afV~f~~~~~a~~Ai~~l~g~~-~~g-- 76 (97)
T 1x5p_A 7 GERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRN-----CAFVTYEKMESADQAVAELNGTQ-VES-- 76 (97)
T ss_dssp SCCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTT-----EEEEEESSHHHHHHHHHHTTTEE-ETT--
T ss_pred CccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCC-----EEEEEECCHHHHHHHHHHhCCCe-ECC--
Confidence 34556678899999996 999999999999999999999853322 99999999999999999999876 556
Q ss_pred CceeeeccCccc
Q 013926 86 SPLQVKYADGEL 97 (434)
Q Consensus 86 ~~i~~~~~~~~~ 97 (434)
+.|.|.++....
T Consensus 77 ~~l~v~~a~~~~ 88 (97)
T 1x5p_A 77 VQLKVNIARKQP 88 (97)
T ss_dssp EEEEEECCSSCC
T ss_pred eEEEEEECCCCC
Confidence 788888876543
No 353
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.45 E-value=3.2e-13 Score=104.76 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=66.2
Q ss_pred CCceEEEcCC--CCCC--------CHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC
Q 013926 347 PGANLFIYHI--PQEF--------GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 416 (434)
Q Consensus 347 ~~~~v~V~nL--p~~~--------t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~ 416 (434)
++++|.|+|| +.+. .++||++.|++||.|.+|.|.++. ++|+|||+|.+.++|.+|++.|||+.++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 5678999999 3331 236899999999999999996552 4899999999999999999999999999
Q ss_pred CeEEEEEEecC
Q 013926 417 GKKLKVQLKRD 427 (434)
Q Consensus 417 g~~i~v~~a~~ 427 (434)
||.|+|.++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999853
No 354
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.44 E-value=2.5e-13 Score=100.90 Aligned_cols=72 Identities=26% Similarity=0.417 Sum_probs=62.5
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhcc----C-------ceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCc
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKEF----A-------LVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKK 79 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~ 79 (434)
..+.++|||+|||+++++++|+++|+.| | .|.++.+.+++. ||||+|.+.++|++|+ .+|+..
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg-----~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKN-----FAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSS-----EEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCc-----EEEEEcCCHHHHHHHH-hcCCCE
Confidence 3578999999999999999999999999 8 899999887633 9999999999999999 998876
Q ss_pred cCCCCCCceeee
Q 013926 80 TLPGASSPLQVK 91 (434)
Q Consensus 80 ~~~g~~~~i~~~ 91 (434)
+.| +.++|.
T Consensus 77 -~~g--~~l~V~ 85 (87)
T 2hzc_A 77 -FQG--QSLKIR 85 (87)
T ss_dssp -ETT--EECEEE
T ss_pred -ECC--eEEEEe
Confidence 556 555554
No 355
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.43 E-value=4.9e-13 Score=105.42 Aligned_cols=77 Identities=17% Similarity=0.290 Sum_probs=66.9
Q ss_pred CeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceE-EEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeec
Q 013926 102 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGC-AFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180 (434)
Q Consensus 102 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~-a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a 180 (434)
-+|||+||++.+|+++|+++|+.||.|..|.+... .+|+ |||+|.+.++|.+|++.|||..+.++ .+.|+|.|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~-~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNA-CCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETT-EEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCC-CcEEEEEec
Confidence 46889999999999999999999999999988764 2567 99999999999999999999985554 357899999
Q ss_pred cCh
Q 013926 181 DTE 183 (434)
Q Consensus 181 ~~~ 183 (434)
...
T Consensus 104 k~~ 106 (130)
T 3zzy_A 104 KLT 106 (130)
T ss_dssp SCS
T ss_pred CCC
Confidence 654
No 356
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.43 E-value=4.1e-13 Score=99.88 Aligned_cols=78 Identities=18% Similarity=0.394 Sum_probs=61.9
Q ss_pred cCCCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEe
Q 013926 99 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 178 (434)
Q Consensus 99 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~ 178 (434)
....+|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|.+ +++.. +.+..+.|.+.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~-~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGED-LIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCE-EEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCC-cccCCEEEEEE
Confidence 34578999999999999999999999999999999875 68999999999999983 45554 44444578999
Q ss_pred eccChHH
Q 013926 179 WADTEKE 185 (434)
Q Consensus 179 ~a~~~~~ 185 (434)
++.++..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9877643
No 357
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.7e-13 Score=105.74 Aligned_cols=77 Identities=13% Similarity=0.196 Sum_probs=65.6
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCC----HHH----HHHHHH--HhccCc
Q 013926 15 VKLFVGQV----PKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPS----RQE----ADKAVN--ACHNKK 79 (434)
Q Consensus 15 ~~l~v~nL----p~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~----~~~----A~~al~--~~~~~~ 79 (434)
.+|||+|| |+.+++.+|+++|+.||.|.+|.++.|+.|+.++ ||||+|.+ +++ |.+|+. .+|+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999 99999996 433 888988 667765
Q ss_pred cCCCCCCceeeeccC
Q 013926 80 TLPGASSPLQVKYAD 94 (434)
Q Consensus 80 ~~~g~~~~i~~~~~~ 94 (434)
+.| +.++|...+
T Consensus 83 -I~G--r~irV~ln~ 94 (136)
T 2j8a_A 83 -IMG--FKFEVILNK 94 (136)
T ss_dssp -ETT--EEEEEEECC
T ss_pred -ecC--cEEEEEECc
Confidence 666 666666554
No 358
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.42 E-value=6.1e-14 Score=114.77 Aligned_cols=85 Identities=21% Similarity=0.369 Sum_probs=68.3
Q ss_pred cCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEE-----eecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCC
Q 013926 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNI-----IKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLP 82 (434)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~-----~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~ 82 (434)
....++++|||+|||+++|+++|+++|+.||.|..|.+ +....++.++ ||||+|.+.++|.+|++.||+.. +.
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~-~~ 118 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYV-LF 118 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBE-ET
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCE-eC
Confidence 34567899999999999999999999999999877410 1112245666 99999999999999999999877 56
Q ss_pred CCCCceeeeccCcc
Q 013926 83 GASSPLQVKYADGE 96 (434)
Q Consensus 83 g~~~~i~~~~~~~~ 96 (434)
| +.|.|.++...
T Consensus 119 g--~~l~V~~a~~~ 130 (143)
T 3egn_A 119 G--KPMVVQFARSA 130 (143)
T ss_dssp T--EECEEEECCCS
T ss_pred C--cEEEEEECCCC
Confidence 6 77888877643
No 359
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.42 E-value=2.5e-13 Score=101.02 Aligned_cols=74 Identities=15% Similarity=0.275 Sum_probs=64.5
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
...++|||+|||+++++++|+++|++| .|.+|.+. .++ ||||+|.+.++|++|++.+|+.. +.| +.++|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--~~l~V 72 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYS-FRG--KDLIV 72 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEE-ETT--EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCe-ECC--cEEEE
Confidence 457899999999999999999999999 89999885 234 99999999999999999999876 566 77888
Q ss_pred eccCc
Q 013926 91 KYADG 95 (434)
Q Consensus 91 ~~~~~ 95 (434)
.++..
T Consensus 73 ~~a~~ 77 (88)
T 1wg1_A 73 QLQPT 77 (88)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 77653
No 360
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.38 E-value=8.5e-13 Score=122.09 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=65.3
Q ss_pred CCCCceEEEcC--CCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC---Ce-
Q 013926 345 GPPGANLFIYH--IPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG---GK- 418 (434)
Q Consensus 345 ~~~~~~v~V~n--Lp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~---g~- 418 (434)
.+++.+|||+| |+.++|+++|+++|++||+|.+|.+.. ++|||||+|.+.++|++|++.|||..+- |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34678999999 578999999999999999999987743 4789999999999999999999999883 45
Q ss_pred -EEEEEEec
Q 013926 419 -KLKVQLKR 426 (434)
Q Consensus 419 -~i~v~~a~ 426 (434)
.|.|.+++
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57777764
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.38 E-value=2.3e-12 Score=110.61 Aligned_cols=79 Identities=18% Similarity=0.344 Sum_probs=70.7
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeec
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 180 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a 180 (434)
.++|||+|||.++++++|+++|+.||.|..|.++++.++.++|+|||+|.+.++|.+|++.++. .++|+ .|.|.++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~--~~~Gr--~l~V~~~ 184 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ--KYKET--DLLILFK 184 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC--EETTE--ECEEEET
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC--eECCE--EEEEEEh
Confidence 5899999999999999999999999999999999988889999999999999999999986654 48887 5677777
Q ss_pred cCh
Q 013926 181 DTE 183 (434)
Q Consensus 181 ~~~ 183 (434)
..-
T Consensus 185 ~~y 187 (193)
T 2voo_A 185 DDY 187 (193)
T ss_dssp TTC
T ss_pred HHH
Confidence 654
No 362
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=2.4e-12 Score=92.98 Aligned_cols=76 Identities=28% Similarity=0.478 Sum_probs=65.6
Q ss_pred cCCCCceEEEcCCC----CCCCH----HHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCcee
Q 013926 344 EGPPGANLFIYHIP----QEFGD----QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL 415 (434)
Q Consensus 344 ~~~~~~~v~V~nLp----~~~t~----~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l 415 (434)
.+|+..||+|.-.+ .++-+ .+|.+.|+.||+|+.+++..++ +||.|.+.++|.+|++ |||..+
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v 73 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL 73 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe
Confidence 35677889988876 23434 6899999999999999998874 8999999999999999 999999
Q ss_pred CCeEEEEEEecCC
Q 013926 416 GGKKLKVQLKRDN 428 (434)
Q Consensus 416 ~g~~i~v~~a~~~ 428 (434)
+||+|+|.++...
T Consensus 74 ~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 74 LNRTITIALKSPS 86 (91)
T ss_dssp TTEEEEEEECCCS
T ss_pred CCeEEEEEeCCCC
Confidence 9999999998754
No 363
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.36 E-value=2.1e-12 Score=101.95 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=66.1
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCCc
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASSP 87 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~~ 87 (434)
.....+.++|||+|| ++|+++|+++|+.||.|.+|.+...+. ||||+|.+.++|++|++.||+.. +.| +.
T Consensus 33 ~~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg-----~aFV~f~~~~~A~~Ai~~lng~~-~~g--~~ 102 (121)
T 2bz2_A 33 RRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRN-----CAFVTYEKMESADQAVAELNGTQ-VES--VQ 102 (121)
T ss_dssp --CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTT-----EEEEECSSHHHHHHHHHHHTTCB-CSS--CB
T ss_pred CCCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCC-----EEEEEECCHHHHHHHHHHhCCCE-ECC--eE
Confidence 445567899999995 799999999999999999999863322 99999999999999999999876 566 77
Q ss_pred eeeeccCcc
Q 013926 88 LQVKYADGE 96 (434)
Q Consensus 88 i~~~~~~~~ 96 (434)
|.|.++...
T Consensus 103 l~V~~a~~~ 111 (121)
T 2bz2_A 103 LKVNIARKQ 111 (121)
T ss_dssp CEEEECCSS
T ss_pred EEEEEeCCC
Confidence 888777644
No 364
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.36 E-value=3.7e-12 Score=97.49 Aligned_cols=83 Identities=11% Similarity=0.061 Sum_probs=69.8
Q ss_pred CccCCceEEEcCCCC-----CCCHHHHHHHHhccCceeEEEEeecCCC-Cccc-eEEEEeCCHHHHHHHHHHhccCccCC
Q 013926 10 SSEERVKLFVGQVPK-----HMTEAQLLAMFKEFALVDEVNIIKDKTT-RASR-CCFVICPSRQEADKAVNACHNKKTLP 82 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~-----~~te~~l~~~f~~~g~v~~~~~~~~~~~-~~~~-~afV~f~~~~~A~~al~~~~~~~~~~ 82 (434)
...++++|+|+||.. +-+++||++.|++||.|.+|.+..++.+ +.++ +|||+|.+.++|.+|++.|||.. +.
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~-~~ 82 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY-FG 82 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE-ET
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE-EC
Confidence 356889999999973 3479999999999999999999998654 4566 99999999999999999999987 66
Q ss_pred CCCCceeeeccCc
Q 013926 83 GASSPLQVKYADG 95 (434)
Q Consensus 83 g~~~~i~~~~~~~ 95 (434)
| +.|.+.++..
T Consensus 83 G--r~i~v~~a~~ 93 (105)
T 2pe8_A 83 G--RVVKACFYNL 93 (105)
T ss_dssp T--EECEEEECCH
T ss_pred C--cEEEEEEcCH
Confidence 6 7788877753
No 365
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=5e-13 Score=99.41 Aligned_cols=76 Identities=25% Similarity=0.301 Sum_probs=61.2
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCCCCCceee
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 90 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~ 90 (434)
.++++|||+|||+++++++|+++|+.||.|.+|.++.+ ++ ||||+|.+.++|++|+ +.. +.+..+.+.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~----~~~-~~~~g~~l~v 72 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLC----GED-LIIKGISVHI 72 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTT----TCE-EEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHh----cCC-ceeCCEEEEE
Confidence 46799999999999999999999999999999998765 33 9999999999998653 332 3223377888
Q ss_pred eccCccc
Q 013926 91 KYADGEL 97 (434)
Q Consensus 91 ~~~~~~~ 97 (434)
.++.++.
T Consensus 73 ~~a~~~~ 79 (88)
T 1wf0_A 73 SNAEPKH 79 (88)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 7776543
No 366
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.33 E-value=2.6e-12 Score=112.66 Aligned_cols=80 Identities=25% Similarity=0.443 Sum_probs=68.4
Q ss_pred ccCCceEEEcCCCCCC---------CHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccC
Q 013926 11 SEERVKLFVGQVPKHM---------TEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTL 81 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~---------te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~ 81 (434)
....++|||+|||.++ +|++|+++|++||.|.+|.++.++. ||||+|.+.++|+.|++.|++..++
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG-----~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKN-----CGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGT-----EEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCC-----EEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 4567999999999998 7999999999999999999987543 9999999999999999999998753
Q ss_pred -----------CCCCCceeeeccCccc
Q 013926 82 -----------PGASSPLQVKYADGEL 97 (434)
Q Consensus 82 -----------~g~~~~i~~~~~~~~~ 97 (434)
.| +.|.|.|+....
T Consensus 206 ~~~~~e~~~~~~g--r~L~V~wA~~~p 230 (240)
T 3u1l_A 206 LPSDKEWDDRREG--TGLLVKWANEDP 230 (240)
T ss_dssp CTTSTTGGGGGGS--CCCEEEECC---
T ss_pred ccccccccccCCC--CEEEEEEccCCC
Confidence 34 788888887543
No 367
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.4e-11 Score=95.34 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=68.0
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCC-HHHHHHHHHHhC--CceeCCeEE
Q 013926 345 GPPGANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYES-PASAQNAIAMMN--GCQLGGKKL 420 (434)
Q Consensus 345 ~~~~~~v~V~nLp~~-~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~A~~~l~--g~~l~g~~i 420 (434)
-+.++.|+|+||+.+ ++.++|+++|+.||+|.+|.+..+.. .|||.|.+ +++|..|++.|| +..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 457899999999999 99999999999999999999987754 49999999 899999999995 889999988
Q ss_pred EEEEec
Q 013926 421 KVQLKR 426 (434)
Q Consensus 421 ~v~~a~ 426 (434)
++.+..
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887654
No 368
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=5.3e-11 Score=92.64 Aligned_cols=84 Identities=13% Similarity=0.181 Sum_probs=67.3
Q ss_pred ccccCccCCceEEEcCCCCCCC-----------HHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHH
Q 013926 6 KEKKSSEERVKLFVGQVPKHMT-----------EAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVN 73 (434)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t-----------e~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~ 73 (434)
.......++++|+|+||....+ +++|+++|++||.|.+|.+ .++. ++ ||||+|.+.++|.+|++
T Consensus 7 ~~~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~---~~G~afV~f~~~~~A~~Ai~ 82 (112)
T 2dit_A 7 GGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH---PDGVASVSFRDPEEADYCIQ 82 (112)
T ss_dssp SCCCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC---TTCEEEEECSCHHHHHHHHH
T ss_pred CCCCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC---CCEEEEEEECCHHHHHHHHH
Confidence 3345677899999999944332 6899999999999999965 5443 34 99999999999999999
Q ss_pred HhccCccCCCCCCceeeeccCcc
Q 013926 74 ACHNKKTLPGASSPLQVKYADGE 96 (434)
Q Consensus 74 ~~~~~~~~~g~~~~i~~~~~~~~ 96 (434)
.||+.. +.| +.|.+.++...
T Consensus 83 ~lng~~-~~g--r~l~v~~a~~~ 102 (112)
T 2dit_A 83 TLDGRW-FGG--RQITAQAWDGT 102 (112)
T ss_dssp HSTTCE-ETT--EECEEEECCSC
T ss_pred HcCCCE-ECC--cEEEEEEeCCC
Confidence 999976 556 78888877643
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.21 E-value=3.1e-11 Score=111.62 Aligned_cols=85 Identities=19% Similarity=0.296 Sum_probs=68.7
Q ss_pred cccccCccCCceEEEcC--CCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCC
Q 013926 5 KKEKKSSEERVKLFVGQ--VPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLP 82 (434)
Q Consensus 5 ~~~~~~~~~~~~l~v~n--Lp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~ 82 (434)
++=+-...++.+|||+| |++.+||++|+++|++||.|.+|.+..++ +||||+|.+.++|++|++.|||..++.
T Consensus 9 ~~v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~k-----gfaFV~f~~~~~A~~Ai~~lnG~~~~~ 83 (345)
T 3tht_A 9 EGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK-----PYSFARYRTTEESKRAYVTLNGKEVVD 83 (345)
T ss_dssp TTCCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTC-----SEEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-----CEEEEEECCHHHHHHHHHHhCCCcccc
Confidence 34455678999999999 57999999999999999999998875532 299999999999999999999988753
Q ss_pred --CCCCceeeeccC
Q 013926 83 --GASSPLQVKYAD 94 (434)
Q Consensus 83 --g~~~~i~~~~~~ 94 (434)
|....+.+.+..
T Consensus 84 ~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 84 DLGQKITLYLNFVE 97 (345)
T ss_dssp TTSCEEECEEEECS
T ss_pred ccCCceEEEEEEee
Confidence 333356666553
No 370
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.19 E-value=4.3e-11 Score=91.62 Aligned_cols=81 Identities=20% Similarity=0.368 Sum_probs=66.8
Q ss_pred CCCeEEEeCC--CCCCc--------HHHHHHhhhccCCeeEEEEccCCCC---CcceEEEEEeCCHHHHHHHHHHhcCCc
Q 013926 100 LEHKLFIGML--PKNVS--------EAEVSALFSIYGTIKDLQILRGSQQ---TSKGCAFLKYETKEQALAALEAINGKH 166 (434)
Q Consensus 100 ~~~~v~v~nl--p~~~~--------~~~l~~~f~~~G~i~~i~~~~~~~~---~~~g~a~V~f~~~~~a~~a~~~l~~~~ 166 (434)
.++.|.|.|+ +.++. +++|++.|++||.|..|.|+++..+ .++|++||+|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3578899998 33332 3799999999999999999988643 578999999999999999999999987
Q ss_pred cCCCCcceEEEeeccCh
Q 013926 167 KMEGSSVPLVVKWADTE 183 (434)
Q Consensus 167 ~~~g~~~~i~v~~a~~~ 183 (434)
++|+ .|.+.++...
T Consensus 84 -f~GR--~i~v~~~~~~ 97 (105)
T 3v4m_A 84 -FANR--VVVTKYCDPD 97 (105)
T ss_dssp -ETTE--ECEEEEECHH
T ss_pred -eCCC--EEEEEEeCHH
Confidence 7887 5778776543
No 371
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.18 E-value=1.1e-11 Score=94.70 Aligned_cols=72 Identities=19% Similarity=0.412 Sum_probs=59.7
Q ss_pred EeCCCCCCcHHHHHHhh------------hccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcc
Q 013926 106 IGMLPKNVSEAEVSALF------------SIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 173 (434)
Q Consensus 106 v~nlp~~~~~~~l~~~f------------~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~ 173 (434)
+.||+..+++++|++.| ++||.|..|.+.++..+.++|+|||+|.+.++|.+|++.|||.. ++|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~-~~Gr-- 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRW-FNGQ-- 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCE-ETTE--
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCE-ECCE--
Confidence 44666666776666555 99999999999998888899999999999999999999999986 7887
Q ss_pred eEEEeec
Q 013926 174 PLVVKWA 180 (434)
Q Consensus 174 ~i~v~~a 180 (434)
.|.|.++
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 4666664
No 372
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=2.6e-11 Score=87.92 Aligned_cols=74 Identities=16% Similarity=0.323 Sum_probs=64.3
Q ss_pred ccCCCCceEEEcCCCCC-----CCH----HHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCc
Q 013926 343 IEGPPGANLFIYHIPQE-----FGD----QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC 413 (434)
Q Consensus 343 ~~~~~~~~v~V~nLp~~-----~t~----~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 413 (434)
..+|+..||+|.-++.. +-+ .+|.+.|+.||+|+.+++..++ +||.|.+.++|.+|++ |||.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe
Confidence 35678889999988632 333 5799999999999999998874 9999999999999999 9999
Q ss_pred eeCCeEEEEEEe
Q 013926 414 QLGGKKLKVQLK 425 (434)
Q Consensus 414 ~l~g~~i~v~~a 425 (434)
.++||.|+|++.
T Consensus 81 ~v~Gr~L~V~~k 92 (95)
T 1ufw_A 81 KVKGRAVKISGP 92 (95)
T ss_dssp EETTEEEEEECC
T ss_pred eeCCeEEEEecc
Confidence 999999999974
No 373
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.12 E-value=1.4e-10 Score=90.52 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=66.9
Q ss_pred cCCceEEEcCCCC-----CCCHHHHHHHHhccCceeEEEEeecCC----CCccc-eEEEEeCCHHHHHHHHHHhccCccC
Q 013926 12 EERVKLFVGQVPK-----HMTEAQLLAMFKEFALVDEVNIIKDKT----TRASR-CCFVICPSRQEADKAVNACHNKKTL 81 (434)
Q Consensus 12 ~~~~~l~v~nLp~-----~~te~~l~~~f~~~g~v~~~~~~~~~~----~~~~~-~afV~f~~~~~A~~al~~~~~~~~~ 81 (434)
.++++|+|+|+-. +-.++||++.|++||.|.+|.+.+++. ++.++ ++||+|.+.++|.+|++.|||+. +
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~-f 96 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW-F 96 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE-E
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE-E
Confidence 4799999999942 234799999999999999999999865 34555 99999999999999999999986 6
Q ss_pred CCCCCceeeeccC
Q 013926 82 PGASSPLQVKYAD 94 (434)
Q Consensus 82 ~g~~~~i~~~~~~ 94 (434)
.| +.|.+.+.+
T Consensus 97 ~G--R~i~v~~~~ 107 (118)
T 3ue2_A 97 AG--RKVVAEVYD 107 (118)
T ss_dssp TT--EECEEEEEC
T ss_pred CC--cEEEEEEcC
Confidence 77 777777654
No 374
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.08 E-value=4.5e-10 Score=98.87 Aligned_cols=78 Identities=17% Similarity=0.269 Sum_probs=66.5
Q ss_pred ceEEEcCCC-----CCCCHHHHHHHhhccCCeEEEEEEecCC----CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 013926 349 ANLFIYHIP-----QEFGDQELGNAFQAFGRVLSAKVFVDKA----TGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 419 (434)
Q Consensus 349 ~~v~V~nLp-----~~~t~~~L~~~F~~fG~v~~v~i~~~~~----~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~ 419 (434)
..+.+.|+- .+-.+++|++.|++||+|.++.|+.+.. ++.++|++||+|.+.++|++|++.|||+.+.||.
T Consensus 125 ~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~ 204 (222)
T 3dxb_A 125 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 204 (222)
T ss_dssp SEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE
Confidence 456666662 2235689999999999999999986543 4589999999999999999999999999999999
Q ss_pred EEEEEec
Q 013926 420 LKVQLKR 426 (434)
Q Consensus 420 i~v~~a~ 426 (434)
|++.++.
T Consensus 205 i~~~~~~ 211 (222)
T 3dxb_A 205 VVAEVYD 211 (222)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999975
No 375
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.6e-09 Score=81.66 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=60.4
Q ss_pred cCCceEEEcCCC-------CCCCHHHHHHHHhccCceeEEEEeecCCCCccc-eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 12 EERVKLFVGQVP-------KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASR-CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 12 ~~~~~l~v~nLp-------~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
....+|.|.-.+ .++++++|+++|++||.|.+|.+.. .++ ||||+|.+.++|.+|++.+++ +.+
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~---~~g 79 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG---LVD 79 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB---CSS
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC---CCC
Confidence 345677776655 4589999999999999999999873 334 999999999999999998544 334
Q ss_pred CCCceeeeccCccc
Q 013926 84 ASSPLQVKYADGEL 97 (434)
Q Consensus 84 ~~~~i~~~~~~~~~ 97 (434)
++|+|.++....
T Consensus 80 --~~l~V~~a~~~~ 91 (100)
T 2d9o_A 80 --NPLKISWLEGQP 91 (100)
T ss_dssp --SBCEEECSSCCC
T ss_pred --CeEEEEEccCCC
Confidence 788888876543
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=1.2e-09 Score=84.58 Aligned_cols=77 Identities=9% Similarity=0.094 Sum_probs=64.0
Q ss_pred ccCccCCceEEEcCCCCC-CCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCC-HHHHHHHHHHhcc-CccCCCC
Q 013926 8 KKSSEERVKLFVGQVPKH-MTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPS-RQEADKAVNACHN-KKTLPGA 84 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~-~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~-~~~A~~al~~~~~-~~~~~g~ 84 (434)
.-.-..++.|||+||+++ +++++|+++|+.||.|..|.+..+.. .|||+|.+ .++|..|++.+|. ...+.+
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g- 85 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRN- 85 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTS-
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeC-
Confidence 345578899999999999 99999999999999999999988766 69999999 8999999999863 333555
Q ss_pred CCceeee
Q 013926 85 SSPLQVK 91 (434)
Q Consensus 85 ~~~i~~~ 91 (434)
..+++.
T Consensus 86 -~~~~~e 91 (121)
T 1owx_A 86 -KEVTWE 91 (121)
T ss_dssp -SSEEEE
T ss_pred -cEEEEE
Confidence 444443
No 377
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.97 E-value=1.7e-09 Score=83.60 Aligned_cols=78 Identities=14% Similarity=0.246 Sum_probs=63.4
Q ss_pred CCCeEEEeCCCCCC----------cHHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCC
Q 013926 100 LEHKLFIGMLPKNV----------SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME 169 (434)
Q Consensus 100 ~~~~v~v~nlp~~~----------~~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~ 169 (434)
.+++|.|.|+=... .+++|++.|++||.|..|.+.++. ++|++||+|.+.++|.+|++.|||.. ++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~-f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRW-FA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCE-ET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCE-EC
Confidence 35788888883321 235889999999999999997763 48999999999999999999999987 78
Q ss_pred CCcceEEEeeccCh
Q 013926 170 GSSVPLVVKWADTE 183 (434)
Q Consensus 170 g~~~~i~v~~a~~~ 183 (434)
|+ .|.+.++...
T Consensus 82 GR--~i~v~~~~~~ 93 (114)
T 3s6e_A 82 GK--MITAAYVPLP 93 (114)
T ss_dssp TE--ECEEEEECHH
T ss_pred CE--EEEEEEEcHH
Confidence 87 5788887543
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.2e-07 Score=70.06 Aligned_cols=71 Identities=13% Similarity=0.252 Sum_probs=65.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAF-----GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 421 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~f-----G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~ 421 (434)
..++|-|-|||..+++..|+.+.+.+ |.|..+.+..+- .| |+|.|.+...|-+|.-+|+|..|.||+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-~G-----Aivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-NG-----AIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-TE-----EEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-Cc-----eEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46889999999999999999999999 999999887773 33 99999999999999999999999999999
Q ss_pred EE
Q 013926 422 VQ 423 (434)
Q Consensus 422 v~ 423 (434)
|.
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 85
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=6.7e-08 Score=69.79 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=60.8
Q ss_pred ccCCceEEEcCCCC----C-CC---HHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCC
Q 013926 11 SEERVKLFVGQVPK----H-MT---EAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLP 82 (434)
Q Consensus 11 ~~~~~~l~v~nLp~----~-~t---e~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~ 82 (434)
.++..+|+|.-+|. . .+ -.+|.+.|.+||.|..++++.++ +||+|.+.++|.+||+ |||.. +.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~-v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKE-LL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCE-ET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeE-eC
Confidence 46788999988772 2 23 36789999999999999999874 8999999999999998 99987 67
Q ss_pred CCCCceeeeccCcc
Q 013926 83 GASSPLQVKYADGE 96 (434)
Q Consensus 83 g~~~~i~~~~~~~~ 96 (434)
| +.++|+...+.
T Consensus 75 G--r~LkV~lkt~d 86 (91)
T 2dnr_A 75 N--RTITIALKSPS 86 (91)
T ss_dssp T--EEEEEEECCCS
T ss_pred C--eEEEEEeCCCC
Confidence 7 66777666543
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=2.8e-07 Score=66.81 Aligned_cols=74 Identities=11% Similarity=0.173 Sum_probs=59.9
Q ss_pred ccCccCCceEEEcCCCCC------CC---HHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccC
Q 013926 8 KKSSEERVKLFVGQVPKH------MT---EAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNK 78 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~------~t---e~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~ 78 (434)
+.-.++..+|+|.-++.+ .+ -.+|++.|.+||.|..++++.++ +||+|.+.++|.+||+ ||+.
T Consensus 9 ~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 9 SFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGS
T ss_pred eecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCe
Confidence 344678899999988743 23 25689999999999999999884 8999999999999998 9998
Q ss_pred ccCCCCCCceeeec
Q 013926 79 KTLPGASSPLQVKY 92 (434)
Q Consensus 79 ~~~~g~~~~i~~~~ 92 (434)
. +.| +.++|+.
T Consensus 81 ~-v~G--r~L~V~~ 91 (95)
T 1ufw_A 81 K-VKG--RAVKISG 91 (95)
T ss_dssp E-ETT--EEEEEEC
T ss_pred e-eCC--eEEEEec
Confidence 7 666 5565554
No 381
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.41 E-value=7.8e-07 Score=65.66 Aligned_cols=80 Identities=13% Similarity=0.207 Sum_probs=67.3
Q ss_pred CCceEEEcCCCCCC-C----HHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 013926 347 PGANLFIYHIPQEF-G----DQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 421 (434)
Q Consensus 347 ~~~~v~V~nLp~~~-t----~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~ 421 (434)
..++|+|.||+.++ . .+.++++|..|+++.....++.-. -..|.|.++++|.+|...||+..+.|++|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 34689999998766 2 257899999999999988877632 379999999999999999999999999999
Q ss_pred EEEecCCcCCC
Q 013926 422 VQLKRDNKQNK 432 (434)
Q Consensus 422 v~~a~~~~~~~ 432 (434)
|.|++......
T Consensus 78 ~YFgq~~~~~~ 88 (104)
T 1wey_A 78 LYFAQTLHIGS 88 (104)
T ss_dssp EECCCCSSCCS
T ss_pred EEecCCCCCcc
Confidence 99998665443
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.41 E-value=1.2e-06 Score=76.81 Aligned_cols=104 Identities=15% Similarity=0.228 Sum_probs=74.3
Q ss_pred EEEEeCCHHHHHHHHHHhccCccCCCCCCceeeeccCcccccCCCeEEEeCC-----CCCCcHHHHHHhhhccCCeeEEE
Q 013926 58 CFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGML-----PKNVSEAEVSALFSIYGTIKDLQ 132 (434)
Q Consensus 58 afV~f~~~~~A~~al~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~v~v~nl-----p~~~~~~~l~~~f~~~G~i~~i~ 132 (434)
-++-+.+.++..+.|+.+-....... ..+.+.++ ..+-.+++|++.|++||.|..+.
T Consensus 99 ~~~G~~~~~~l~~~l~~~l~~~~~~s------------------~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~ 160 (222)
T 3dxb_A 99 TKVGALSKGQLKEFLDANLAGSAMES------------------TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVI 160 (222)
T ss_dssp EEESCCCHHHHHHHHHHHSCCSCCBC------------------SEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEE
T ss_pred EeccccChHHHHHHHHhhcccccccc------------------ccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEE
Confidence 45556788888888877532211111 11222222 12345689999999999999999
Q ss_pred EccCC-----CCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceEEEeeccC
Q 013926 133 ILRGS-----QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 182 (434)
Q Consensus 133 ~~~~~-----~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i~v~~a~~ 182 (434)
++++. ++.++|++||+|.+.++|.+|++.|||.. ++|+ .|.+.+...
T Consensus 161 v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~-~~gr--~i~~~~~~~ 212 (222)
T 3dxb_A 161 IYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW-FAGR--KVVAEVYDQ 212 (222)
T ss_dssp EEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB-SSSS--BCEEEECCH
T ss_pred EecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce-ECCe--EEEEEEcCH
Confidence 97554 34789999999999999999999999986 8888 467777653
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.93 E-value=5.9e-05 Score=55.75 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=64.1
Q ss_pred CCCeEEEeCCCCCCcHHHHHHhhhcc-----CCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcce
Q 013926 100 LEHKLFIGMLPKNVSEAEVSALFSIY-----GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVP 174 (434)
Q Consensus 100 ~~~~v~v~nlp~~~~~~~l~~~f~~~-----G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~ 174 (434)
..++|-+-|||..++...|+.+++.+ |.+..|.+..| .+-|+|+|.+..+|-+|...|+|.. |+|+ .
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~e-f~gr--~ 91 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQ-FQGK--V 91 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEE-ETTE--E
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCee-ecCe--E
Confidence 35788888999999999999999999 99999999887 5679999999999999999999987 7777 5
Q ss_pred EEEeec
Q 013926 175 LVVKWA 180 (434)
Q Consensus 175 i~v~~a 180 (434)
|.+...
T Consensus 92 Lr~gTv 97 (117)
T 2l9w_A 92 IRSGTI 97 (117)
T ss_dssp EEEECH
T ss_pred EEecCH
Confidence 666544
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=8.6e-05 Score=54.49 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=67.7
Q ss_pred cCCceEEEcCCCCCCCHHHHHHHHhc-----cCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCCCCCC
Q 013926 12 EERVKLFVGQVPKHMTEAQLLAMFKE-----FALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLPGASS 86 (434)
Q Consensus 12 ~~~~~l~v~nLp~~~te~~l~~~f~~-----~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~g~~~ 86 (434)
.-..+|.|.|||+++.++.|.-+|+. =|.|.++.... . -|+|+|.+.+.|++.|++- ...+.+ .
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~-----~AvItF~d~~va~rVL~k~--~H~L~~--~ 74 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--C-----GGVLTFREPADAERVLAQA--DHELHG--A 74 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--T-----EEEEEESSHHHHHHHHTCS--CCBSSS--S
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--C-----cEEEEEcChHHHHHHhcCC--cceecC--e
Confidence 45689999999999999999999986 25888887765 2 6999999999999999872 223544 5
Q ss_pred ceeeeccCcccccCCCeEEEeCCCCCCc
Q 013926 87 PLQVKYADGELERLEHKLFIGMLPKNVS 114 (434)
Q Consensus 87 ~i~~~~~~~~~~~~~~~v~v~nlp~~~~ 114 (434)
++.|.. .......+|++++|++.++
T Consensus 75 ~LsV~P---~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 75 QLSLRP---APPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp BCEEEE---CCCCCCCCCCCCSCCCCCC
T ss_pred EEEEEc---CCCCCcceEeeecCCCCCC
Confidence 555533 2233457899999998765
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=9.9e-05 Score=54.18 Aligned_cols=69 Identities=26% Similarity=0.400 Sum_probs=58.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhc-----cCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQA-----FGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 421 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~-----fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~ 421 (434)
..++|.|.|||.+++++.|.-+|+. =|+|.++.... +-|+|.|.+.+.|++.++. ..+.|+|.+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 3578999999999999999999977 26899988754 2499999999999999985 58889999888
Q ss_pred EEE
Q 013926 422 VQL 424 (434)
Q Consensus 422 v~~ 424 (434)
|.=
T Consensus 78 V~P 80 (104)
T 2dhx_A 78 LRP 80 (104)
T ss_dssp EEE
T ss_pred EEc
Confidence 854
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.77 E-value=0.00012 Score=52.97 Aligned_cols=61 Identities=23% Similarity=0.386 Sum_probs=51.8
Q ss_pred ccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhc
Q 013926 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76 (434)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~ 76 (434)
+.+....+.++| +.|+.+.-.||.++|+.||.|. |.++.|- .|||.|.+.+.|..|+..++
T Consensus 10 d~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 10 DLQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 445556677788 9999999999999999999654 8888874 69999999999999999764
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.63 E-value=0.00025 Score=51.52 Aligned_cols=69 Identities=12% Similarity=0.145 Sum_probs=56.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCc-cc--eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA-SR--CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 15 ~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~-~~--~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
++|.||+||+.+||+++.+.+.....+.-..++..+.+.. +. -|||.|.+.+++....+.++|......
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 5799999999999999999999988777666666553322 33 789999999999999999998765543
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.51 E-value=0.00075 Score=48.95 Aligned_cols=81 Identities=10% Similarity=0.126 Sum_probs=63.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCC--eeeEEEEEeCCHHHHHHHHHHhCCceeCC-----eEEE
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGV--SKCFGFVSYESPASAQNAIAMMNGCQLGG-----KKLK 421 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~--~~g~afV~f~~~~~A~~A~~~l~g~~l~g-----~~i~ 421 (434)
+.|.|++||.+.|++++.+.++....+........+.+.+ ...-|+|.|.+.+++..-.+.++|+.+.+ .+-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4688999999999999999999998887777665543222 23559999999999999999999998854 2345
Q ss_pred EEEecCCc
Q 013926 422 VQLKRDNK 429 (434)
Q Consensus 422 v~~a~~~~ 429 (434)
|.+|-.++
T Consensus 82 VE~AP~qk 89 (91)
T 1uw4_A 82 VEFAPFQK 89 (91)
T ss_dssp EEECSSCC
T ss_pred EEEcCCCc
Confidence 66665544
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.45 E-value=0.00039 Score=52.85 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=56.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC-eEEEEEE
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG-KKLKVQL 424 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g-~~i~v~~ 424 (434)
..+-|.|-+.|... ...+...|++||+|.+...... .-+-.|+|.++.+|++||.. ||..|+| ..|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEE
Confidence 45779999998875 6778899999999999876211 23889999999999999996 9999986 5555544
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.37 E-value=0.00032 Score=50.98 Aligned_cols=55 Identities=25% Similarity=0.385 Sum_probs=47.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhc
Q 013926 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76 (434)
Q Consensus 14 ~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~ 76 (434)
.+.++| +.|+.+.-.||.++|+.||. ..|.++.|- .|||.|.+.+.|..|+..++
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 355677 99999999999999999995 458888764 69999999999999999864
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.23 E-value=0.0012 Score=47.87 Aligned_cols=55 Identities=29% Similarity=0.444 Sum_probs=43.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 013926 348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN 411 (434)
Q Consensus 348 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 411 (434)
.++++| +.|..+-..||.++|+.||.|.=-+| -| + -|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi-dD--T-----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI-DD--T-----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE-ET--T-----EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEE-cC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 356667 99999999999999999995432233 23 3 59999999999999999764
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.94 E-value=0.0009 Score=48.62 Aligned_cols=54 Identities=28% Similarity=0.448 Sum_probs=43.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 013926 349 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN 411 (434)
Q Consensus 349 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 411 (434)
.+++| +.|..+-..||.++|+.||.| .|+-+-| + -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET--T-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999933 3332223 3 59999999999999999874
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.84 E-value=0.0011 Score=48.43 Aligned_cols=71 Identities=8% Similarity=0.081 Sum_probs=51.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCC-Cccc--eEEEEeCCHHHHHHHHHHhccCccCCC
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT-RASR--CCFVICPSRQEADKAVNACHNKKTLPG 83 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~-~~~~--~afV~f~~~~~A~~al~~~~~~~~~~g 83 (434)
.+-+|.||.||+.+||+++.+.+..+-.+.-..++..+.+ +.+. -|||.|.+.++.....+..+|...+..
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 4678999999999999999988877654433222222222 2222 689999999999999999988765543
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.70 E-value=0.005 Score=46.78 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=50.6
Q ss_pred CccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhccCccCC
Q 013926 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACHNKKTLP 82 (434)
Q Consensus 10 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~~~~~~~ 82 (434)
.....+.|.|-+.|+.. -..|...|++||.|.+...... ..+..|+|.+..+|++||+. |+ .++.
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~-----~NWihI~Y~s~~~A~rAL~k-NG-~ii~ 84 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT-----GNWMHIRYQSKLQARKALSK-DG-RIFG 84 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS-----SSEEEEEESSHHHHHHHHTT-TT-CEET
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC-----CCeEEEEeCCHHHHHHHHHh-CC-eEec
Confidence 34567889999999885 6678999999999998876211 12999999999999999987 34 4444
No 395
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.56 E-value=0.0047 Score=45.53 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=59.2
Q ss_pred CCeEEEeCCCCCC-c----HHHHHHhhhccCCeeEEEEccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCccCCCCcceE
Q 013926 101 EHKLFIGMLPKNV-S----EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 175 (434)
Q Consensus 101 ~~~v~v~nlp~~~-~----~~~l~~~f~~~G~i~~i~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~~~i 175 (434)
.++|+|+||+.++ + .+.++++|..|+++......+. -.-.-|.|.+.++|.+|...|++.. +.|. .+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~-f~g~--~~ 76 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTE-FLGK--EM 76 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSE-ETTE--EC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccce-ecCc--ee
Confidence 4689999998754 2 3578899999999888777754 3467999999999999999999987 6666 57
Q ss_pred EEeecc
Q 013926 176 VVKWAD 181 (434)
Q Consensus 176 ~v~~a~ 181 (434)
++.++.
T Consensus 77 r~YFgq 82 (104)
T 1wey_A 77 KLYFAQ 82 (104)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 888775
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.50 E-value=0.0051 Score=44.83 Aligned_cols=76 Identities=14% Similarity=0.254 Sum_probs=54.5
Q ss_pred CeEEEeCCCCCCcHHHHHHhhhccCCeeEEEEccCCCCC------cceEEEEEeCCHHHHHHHHHHhcCCccCCCCc--c
Q 013926 102 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQT------SKGCAFLKYETKEQALAALEAINGKHKMEGSS--V 173 (434)
Q Consensus 102 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~i~~~~~~~~~------~~g~a~V~f~~~~~a~~a~~~l~~~~~~~g~~--~ 173 (434)
-+|.|+.||+.+|++++.+.++.+-++ .+.....|+ ....|||.|.+.++.....+..+|..+.+.+. .
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~---d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~ 86 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAH---DYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEY 86 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSE---EECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCcc---ceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEe
Confidence 479999999999999988777665443 333222221 23678999999999999999999987766543 3
Q ss_pred eEEEeec
Q 013926 174 PLVVKWA 180 (434)
Q Consensus 174 ~i~v~~a 180 (434)
+-.|.+|
T Consensus 87 ~a~VE~A 93 (97)
T 2l08_A 87 PAVVEFA 93 (97)
T ss_dssp EEEEEEC
T ss_pred eeEEEec
Confidence 3445555
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.43 E-value=0.0029 Score=48.70 Aligned_cols=75 Identities=24% Similarity=0.441 Sum_probs=52.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeEE-EEEEec--------CCCC-----CeeeEEEEEeCCHHHHHHHHHHhCCc
Q 013926 348 GANLFIYHIPQEFGDQELGNAFQAFGRVLS-AKVFVD--------KATG-----VSKCFGFVSYESPASAQNAIAMMNGC 413 (434)
Q Consensus 348 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~-v~i~~~--------~~~g-----~~~g~afV~f~~~~~A~~A~~~l~g~ 413 (434)
..-|.|-+.|.+. ...+.+.|++||.|.. +..... +... ....+--|+|.++.+|++||.. ||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 3457788888766 4566789999999976 221110 0000 1245789999999999999997 999
Q ss_pred eeCCeEEEEEE
Q 013926 414 QLGGKKLKVQL 424 (434)
Q Consensus 414 ~l~g~~i~v~~ 424 (434)
.|.|.-|-|..
T Consensus 85 ii~G~mIGV~P 95 (132)
T 3p3d_A 85 VFNGVLLGVIP 95 (132)
T ss_dssp EETTEECEEEE
T ss_pred EeCcEEEEEEE
Confidence 99998766654
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.34 E-value=0.00062 Score=65.10 Aligned_cols=63 Identities=10% Similarity=0.231 Sum_probs=48.1
Q ss_pred cccCccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHH
Q 013926 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNA 74 (434)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~ 74 (434)
.++.....++|+|. .|...++.+|.++|++||+|.++.+.++++ .||.|+|.+.+++..+++.
T Consensus 46 ~~r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 46 NERREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS----EEEEEECC---CCHHHHSS
T ss_pred HHHHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC----eEEEEEeCCHHHHHHHHhc
Confidence 35566677999997 799999999999999999999999987643 2999999999999987654
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.00 E-value=0.0033 Score=60.12 Aligned_cols=56 Identities=13% Similarity=0.239 Sum_probs=41.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013926 348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409 (434)
Q Consensus 348 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 409 (434)
.++|+|. .|..+++.+|.++|++||.|.++..-.+ .| -||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FG---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SS---EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CC---eEEEEEeCCHHHHHHHHhc
Confidence 4889998 6889999999999999999999877544 33 5999999999999977654
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.80 E-value=0.098 Score=40.26 Aligned_cols=77 Identities=26% Similarity=0.367 Sum_probs=52.2
Q ss_pred CCeEEEeCCCCCCcHHHHHHhhhccCCeeE-EEEccCCC-------------C-CcceEEEEEeCCHHHHHHHHHHhcCC
Q 013926 101 EHKLFIGMLPKNVSEAEVSALFSIYGTIKD-LQILRGSQ-------------Q-TSKGCAFLKYETKEQALAALEAINGK 165 (434)
Q Consensus 101 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~-i~~~~~~~-------------~-~~~g~a~V~f~~~~~a~~a~~~l~~~ 165 (434)
+..|.|-++|..... .|.+.|++||.|.+ +.+.++.. . ...++..|+|++..+|.+|+. .||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 456888899866655 57789999999875 22221000 0 124688999999999999996 5775
Q ss_pred ccCCCCcceEEEeeccC
Q 013926 166 HKMEGSSVPLVVKWADT 182 (434)
Q Consensus 166 ~~~~g~~~~i~v~~a~~ 182 (434)
. ++|. -|-|.+...
T Consensus 85 i-i~G~--mIGV~Py~~ 98 (132)
T 3p3d_A 85 V-FNGV--LLGVIPYTK 98 (132)
T ss_dssp E-ETTE--ECEEEECCH
T ss_pred E-eCcE--EEEEEECCH
Confidence 4 7886 356666643
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.83 E-value=1.4 Score=42.83 Aligned_cols=56 Identities=25% Similarity=0.377 Sum_probs=46.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHhc
Q 013926 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNACH 76 (434)
Q Consensus 13 ~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~~ 76 (434)
....++|+ +|..+...+|.++|+.||. ..|.++.+. .|||.|.+.++|..+++.++
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS------EEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC------eEEEEECCHHHHHHHHHHHH
Confidence 34577776 8999999999999999996 456665543 69999999999999999975
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.69 E-value=2.2 Score=41.49 Aligned_cols=56 Identities=29% Similarity=0.406 Sum_probs=44.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 013926 348 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 412 (434)
Q Consensus 348 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 412 (434)
+.+++|+ +|..|...+|.++|+.||.| +|+-+-+ + .|||.|.+.+.|..++++++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd--t-----~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS--S-----EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC--C-----eEEEEECCHHHHHHHHHHHHh
Confidence 3567776 89999999999999999954 4433222 2 599999999999999998853
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=84.23 E-value=7.7 Score=27.15 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=45.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 013926 347 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN 411 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 411 (434)
.+|-|.|-|+|..+-..++.-...-.|---.+..+- |.|+|.|.+.++.+.|+..|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHH
Confidence 568899999999988887776667777666665532 359999999999999998873
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=66.45 E-value=12 Score=25.48 Aligned_cols=68 Identities=12% Similarity=0.205 Sum_probs=43.4
Q ss_pred eEEEcCCC-CCCCHHHHHHHhhccCC-----eEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 013926 350 NLFIYHIP-QEFGDQELGNAFQAFGR-----VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 423 (434)
Q Consensus 350 ~v~V~nLp-~~~t~~~L~~~F~~fG~-----v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~l~g~~i~v~ 423 (434)
+++|..-- ..+...+|..+++.-+. |=.+.|.-+ |.||+-... .|..+++.|++..+.|+++++.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 56664332 35778888888886554 444555222 688888765 4677999999999999999998
Q ss_pred Eec
Q 013926 424 LKR 426 (434)
Q Consensus 424 ~a~ 426 (434)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 875
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=66.40 E-value=23 Score=28.53 Aligned_cols=54 Identities=9% Similarity=0.131 Sum_probs=39.0
Q ss_pred ceEEEcCCCC-C--------CCHHHHHHHh--hccCCeEEEEEEecCCCCCeeeEEEEEeCCHHHHHH
Q 013926 349 ANLFIYHIPQ-E--------FGDQELGNAF--QAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 405 (434)
Q Consensus 349 ~~v~V~nLp~-~--------~t~~~L~~~F--~~fG~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 405 (434)
-++.|-|+|. . .+..+|++.| +.|..+. |+.+.++ .-++|++.|.|.+....-+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~ 77 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLH 77 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHH
Confidence 4577889886 2 3457999988 9997755 6666774 3488999999987655443
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=55.88 E-value=49 Score=23.08 Aligned_cols=58 Identities=9% Similarity=0.134 Sum_probs=47.9
Q ss_pred ccCCceEEEcCCCCCCCHHHHHHHHhccCceeEEEEeecCCCCccceEEEEeCCHHHHHHHHHHh
Q 013926 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRCCFVICPSRQEADKAVNAC 75 (434)
Q Consensus 11 ~~~~~~l~v~nLp~~~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~afV~f~~~~~A~~al~~~ 75 (434)
-...|-|-|-|+|..+-..++.-.....|--.-|..+.. .|.++|.+.++-+-|+..+
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyidg-------qamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG-------QAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS-------CEEEEESSHHHHHHHHHHH
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC-------eeEEEecCChHHHHHHHHH
Confidence 456788899999999999999988888886666665432 6999999999999999885
No 407
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.89 E-value=1.1e+02 Score=21.43 Aligned_cols=55 Identities=18% Similarity=0.335 Sum_probs=39.2
Q ss_pred EEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEEecCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 013926 352 FIYHIPQEFGDQELGNAFQA-FG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 409 (434)
Q Consensus 352 ~V~nLp~~~t~~~L~~~F~~-fG-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 409 (434)
|+-..+...+..+|++.++. || +|.+|..+..+ .|..+ |+|.++...+|......
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~~KK--A~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RGEKK--AYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TSCEE--EEEEECTTSCHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CCceE--EEEEcCCCCcHHHHHHh
Confidence 33345678899999998876 77 67888776654 34333 99999988877665443
No 408
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=32.61 E-value=14 Score=27.29 Aligned_cols=50 Identities=16% Similarity=0.096 Sum_probs=34.5
Q ss_pred CCHHHHHHHHhccCceeEEEEeecCCCCccceE--EEEeCCHHHHHHHHHHhc
Q 013926 26 MTEAQLLAMFKEFALVDEVNIIKDKTTRASRCC--FVICPSRQEADKAVNACH 76 (434)
Q Consensus 26 ~te~~l~~~f~~~g~v~~~~~~~~~~~~~~~~a--fV~f~~~~~A~~al~~~~ 76 (434)
..+++|..|..+.+ +..+.+.+....+..-|. |=.|.+.++|++|++.|-
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP 85 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLP 85 (106)
Confidence 45677888888776 455666654433333333 448999999999999873
No 409
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=27.33 E-value=19 Score=25.40 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=39.6
Q ss_pred CCceEEEcCCCCCCCHHHH--------HHHhhccCC-----eEEEEEEecCC----CCCeeeEEEEEeCCHHHHHHHHHH
Q 013926 347 PGANLFIYHIPQEFGDQEL--------GNAFQAFGR-----VLSAKVFVDKA----TGVSKCFGFVSYESPASAQNAIAM 409 (434)
Q Consensus 347 ~~~~v~V~nLp~~~t~~~L--------~~~F~~fG~-----v~~v~i~~~~~----~g~~~g~afV~f~~~~~A~~A~~~ 409 (434)
..|-|.|-|+|..+-..++ ++|++.|=+ |.+--|-.+.+ +=...|.|++.|.+.++.+.|+..
T Consensus 17 qnclikiinipqgtlkaevvlavrhlgyefycdyidensnqinsnliqqdqhpqlndllkegqamirfqnsdeqrlaiqk 96 (137)
T 2lsl_A 17 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDENSNQINSNLIQQDQHPQLNDLLKEGQAMIRFQNSDEQRLAIQK 96 (137)
Confidence 5577888888877644332 355565532 22211211211 123457899999999999999987
Q ss_pred hC
Q 013926 410 MN 411 (434)
Q Consensus 410 l~ 411 (434)
|-
T Consensus 97 ll 98 (137)
T 2lsl_A 97 LL 98 (137)
Confidence 64
Done!