Query 013928
Match_columns 434
No_of_seqs 283 out of 2544
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:47:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02374 pyruvate dehydrogenas 100.0 8.9E-95 1.9E-99 747.7 41.5 432 1-434 1-433 (433)
2 COG1071 AcoA Pyruvate/2-oxoglu 100.0 1.5E-84 3.3E-89 650.2 35.2 325 82-412 22-348 (358)
3 PLN02269 Pyruvate dehydrogenas 100.0 1.4E-80 3.1E-85 630.4 37.7 334 82-425 25-362 (362)
4 KOG0225 Pyruvate dehydrogenase 100.0 4.9E-81 1.1E-85 606.0 29.5 341 80-432 52-394 (394)
5 CHL00149 odpA pyruvate dehydro 100.0 9.6E-79 2.1E-83 614.4 36.9 327 82-408 15-341 (341)
6 TIGR03182 PDH_E1_alph_y pyruva 100.0 6.1E-77 1.3E-81 596.2 34.7 315 86-407 1-315 (315)
7 TIGR03181 PDH_E1_alph_x pyruva 100.0 6.9E-71 1.5E-75 557.8 35.3 314 82-412 19-333 (341)
8 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 1.1E-68 2.5E-73 531.6 33.1 292 92-390 1-293 (293)
9 PF00676 E1_dh: Dehydrogenase 100.0 5.1E-69 1.1E-73 535.4 30.4 297 95-399 2-300 (300)
10 KOG1182 Branched chain alpha-k 100.0 7.1E-62 1.5E-66 468.5 21.6 328 78-412 77-406 (432)
11 PRK09404 sucA 2-oxoglutarate d 100.0 2.5E-59 5.4E-64 517.2 35.8 328 65-407 169-527 (924)
12 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 1.2E-53 2.5E-58 470.4 34.0 327 65-398 168-522 (929)
13 cd02016 TPP_E1_OGDC_like Thiam 100.0 5.7E-49 1.2E-53 382.1 20.0 237 102-344 1-264 (265)
14 PRK12270 kgd alpha-ketoglutara 100.0 2.6E-38 5.5E-43 341.4 31.8 322 65-393 473-821 (1228)
15 KOG0450 2-oxoglutarate dehydro 100.0 1.5E-33 3.4E-38 293.7 24.4 334 65-406 228-588 (1017)
16 PRK12315 1-deoxy-D-xylulose-5- 100.0 1.4E-33 3E-38 303.7 20.4 234 71-333 2-250 (581)
17 COG0567 SucA 2-oxoglutarate de 100.0 1.1E-31 2.3E-36 290.7 27.1 320 65-393 155-499 (906)
18 KOG0451 Predicted 2-oxoglutara 100.0 8.9E-32 1.9E-36 275.3 20.9 324 68-397 139-497 (913)
19 PRK12754 transketolase; Review 99.9 2.3E-25 5E-30 242.0 24.3 143 188-334 107-254 (663)
20 TIGR00232 tktlase_bact transke 99.9 6.1E-25 1.3E-29 239.5 22.2 143 188-335 103-251 (653)
21 COG0021 TktA Transketolase [Ca 99.9 1.5E-24 3.2E-29 228.2 22.2 283 139-434 59-381 (663)
22 PRK12753 transketolase; Review 99.9 4.9E-24 1.1E-28 232.6 23.5 143 188-334 107-254 (663)
23 PLN02790 transketolase 99.9 1.5E-23 3.2E-28 228.7 23.9 143 188-334 98-246 (654)
24 PTZ00089 transketolase; Provis 99.9 2.4E-23 5.2E-28 227.4 25.0 223 117-350 27-277 (661)
25 cd02012 TPP_TK Thiamine pyroph 99.9 1.1E-22 2.3E-27 198.5 21.1 137 189-335 99-236 (255)
26 cd02007 TPP_DXS Thiamine pyrop 99.9 2.7E-22 5.8E-27 188.5 18.8 124 190-330 70-194 (195)
27 PF00456 Transketolase_N: Tran 99.9 7.6E-22 1.6E-26 199.0 20.5 145 188-336 104-253 (332)
28 COG3959 Transketolase, N-termi 99.9 3.6E-21 7.8E-26 180.2 21.9 216 90-327 8-242 (243)
29 TIGR00204 dxs 1-deoxy-D-xylulo 99.9 6.9E-22 1.5E-26 214.4 19.4 234 73-334 2-282 (617)
30 PRK05444 1-deoxy-D-xylulose-5- 99.9 1.1E-21 2.4E-26 211.9 20.4 237 71-334 6-250 (580)
31 cd02017 TPP_E1_EcPDC_like Thia 99.9 6.3E-21 1.4E-25 193.7 24.7 209 117-333 31-324 (386)
32 PRK05899 transketolase; Review 99.9 5.3E-21 1.1E-25 208.2 24.5 155 189-348 112-275 (624)
33 cd02011 TPP_PK Thiamine pyroph 99.9 6.1E-22 1.3E-26 188.7 14.0 186 122-331 1-208 (227)
34 TIGR03186 AKGDH_not_PDH alpha- 99.9 4E-20 8.8E-25 204.2 26.8 242 85-334 70-396 (889)
35 PRK12571 1-deoxy-D-xylulose-5- 99.8 4.4E-20 9.5E-25 201.1 20.9 237 71-335 8-292 (641)
36 TIGR00759 aceE pyruvate dehydr 99.8 2E-19 4.3E-24 196.9 25.7 241 85-332 70-394 (885)
37 PLN02582 1-deoxy-D-xylulose-5- 99.8 9E-20 1.9E-24 198.4 21.3 236 71-335 33-329 (677)
38 PLN02234 1-deoxy-D-xylulose-5- 99.8 2.2E-19 4.8E-24 194.0 23.1 240 71-336 66-331 (641)
39 PRK11864 2-ketoisovalerate fer 99.8 1.8E-19 3.8E-24 178.7 17.6 233 145-391 14-297 (300)
40 cd02013 TPP_Xsc_like Thiamine 99.8 3.6E-20 7.7E-25 174.0 11.0 123 191-329 49-182 (196)
41 cd02006 TPP_Gcl Thiamine pyrop 99.8 6.9E-20 1.5E-24 172.7 11.5 123 191-329 53-197 (202)
42 PRK13012 2-oxoacid dehydrogena 99.8 1.8E-18 3.9E-23 191.8 23.7 240 85-332 84-408 (896)
43 cd02004 TPP_BZL_OCoD_HPCL Thia 99.8 2.3E-19 5E-24 164.7 11.8 116 191-325 44-171 (172)
44 PRK09405 aceE pyruvate dehydro 99.8 7.1E-18 1.5E-22 186.6 24.7 240 84-331 75-399 (891)
45 cd02015 TPP_AHAS Thiamine pyro 99.8 3.7E-19 8.1E-24 165.5 10.5 118 191-327 46-175 (186)
46 cd02002 TPP_BFDC Thiamine pyro 99.8 1.8E-18 3.9E-23 159.2 12.0 115 191-325 46-178 (178)
47 cd00568 TPP_enzymes Thiamine p 99.8 1.2E-18 2.6E-23 157.9 10.0 118 189-325 40-168 (168)
48 COG1154 Dxs Deoxyxylulose-5-ph 99.8 9.7E-18 2.1E-22 176.2 17.8 235 71-334 4-287 (627)
49 PF13292 DXP_synthase_N: 1-deo 99.8 3.5E-18 7.7E-23 164.9 13.4 226 73-325 2-270 (270)
50 PRK05261 putative phosphoketol 99.8 1.5E-17 3.2E-22 182.0 16.7 205 114-332 47-289 (785)
51 cd02008 TPP_IOR_alpha Thiamine 99.7 1.5E-17 3.2E-22 153.9 13.4 119 191-325 47-176 (178)
52 cd02014 TPP_POX Thiamine pyrop 99.7 1.2E-17 2.6E-22 154.3 11.6 118 191-327 47-174 (178)
53 cd02003 TPP_IolD Thiamine pyro 99.7 8E-18 1.7E-22 159.1 10.4 120 191-329 44-187 (205)
54 cd03372 TPP_ComE Thiamine pyro 99.7 3.1E-17 6.6E-22 152.1 13.5 129 194-346 41-172 (179)
55 cd02010 TPP_ALS Thiamine pyrop 99.7 6.5E-18 1.4E-22 156.3 8.9 118 191-327 44-171 (177)
56 KOG0523 Transketolase [Carbohy 99.7 2.7E-16 5.8E-21 164.6 20.5 216 96-334 14-249 (632)
57 PF02775 TPP_enzyme_C: Thiamin 99.7 7E-18 1.5E-22 151.8 7.1 116 191-323 24-153 (153)
58 PRK06163 hypothetical protein; 99.7 4.7E-17 1E-21 153.7 12.6 130 194-346 56-189 (202)
59 TIGR01504 glyox_carbo_lig glyo 99.7 2.1E-17 4.6E-22 179.0 11.1 121 191-327 414-556 (588)
60 cd02005 TPP_PDC_IPDC Thiamine 99.7 5.6E-17 1.2E-21 150.8 10.8 119 191-327 46-175 (183)
61 COG0028 IlvB Thiamine pyrophos 99.7 4.3E-17 9.3E-22 174.9 11.4 120 189-328 402-533 (550)
62 PLN02225 1-deoxy-D-xylulose-5- 99.7 4.1E-16 8.9E-21 169.3 18.8 232 71-329 78-367 (701)
63 cd03371 TPP_PpyrDC Thiamine py 99.7 9.6E-17 2.1E-21 150.0 11.5 118 194-330 47-167 (188)
64 cd02009 TPP_SHCHC_synthase Thi 99.7 3.3E-17 7.2E-22 151.2 8.1 115 191-325 47-174 (175)
65 cd02001 TPP_ComE_PpyrDC Thiami 99.7 7.2E-17 1.6E-21 146.6 10.1 113 194-326 41-155 (157)
66 PRK06154 hypothetical protein; 99.7 1.1E-16 2.3E-21 172.7 12.2 121 191-328 427-557 (565)
67 TIGR03846 sulfopy_beta sulfopy 99.7 1.2E-16 2.5E-21 148.6 10.5 113 194-327 41-157 (181)
68 cd03375 TPP_OGFOR Thiamine pyr 99.7 2.3E-16 5E-21 148.0 12.5 119 191-326 47-184 (193)
69 PRK07525 sulfoacetaldehyde ace 99.7 7E-17 1.5E-21 174.9 10.4 124 191-330 431-566 (588)
70 PRK12474 hypothetical protein; 99.7 1.4E-16 3E-21 170.1 12.3 150 157-325 341-518 (518)
71 PRK07586 hypothetical protein; 99.7 1E-16 2.2E-21 170.9 10.9 150 157-325 337-514 (514)
72 PRK11269 glyoxylate carboligas 99.7 1.1E-16 2.5E-21 173.4 11.3 122 191-327 415-557 (591)
73 PRK07979 acetolactate synthase 99.7 1.2E-16 2.6E-21 172.6 11.0 154 157-327 372-549 (574)
74 TIGR03457 sulphoacet_xsc sulfo 99.7 1.5E-16 3.3E-21 171.9 11.4 122 191-329 426-560 (579)
75 PRK07524 hypothetical protein; 99.7 9.9E-17 2.2E-21 171.8 9.6 121 191-330 403-533 (535)
76 PRK07418 acetolactate synthase 99.7 1.5E-16 3.3E-21 173.1 10.6 152 156-327 386-560 (616)
77 PRK06725 acetolactate synthase 99.7 1.9E-16 4.1E-21 171.0 11.0 151 157-327 373-546 (570)
78 PRK09107 acetolactate synthase 99.7 1.5E-16 3.3E-21 172.5 10.2 151 157-327 380-555 (595)
79 PRK07092 benzoylformate decarb 99.7 3.5E-16 7.6E-21 167.4 12.7 150 157-325 359-529 (530)
80 PRK05858 hypothetical protein; 99.7 2.7E-16 5.7E-21 168.8 11.6 151 157-327 358-531 (542)
81 TIGR02418 acolac_catab acetola 99.7 3.8E-16 8.3E-21 167.4 12.6 118 191-328 404-532 (539)
82 PRK08979 acetolactate synthase 99.7 2.1E-16 4.5E-21 170.7 10.6 152 157-327 372-547 (572)
83 PRK06965 acetolactate synthase 99.7 3.3E-16 7.1E-21 169.7 12.1 152 157-327 388-563 (587)
84 PRK08327 acetolactate synthase 99.7 3.8E-16 8.2E-21 168.6 11.9 122 191-325 426-566 (569)
85 PRK08527 acetolactate synthase 99.6 4.9E-16 1.1E-20 167.5 11.3 153 157-329 365-541 (563)
86 PRK06546 pyruvate dehydrogenas 99.6 5.5E-16 1.2E-20 167.7 11.6 118 191-328 404-532 (578)
87 TIGR03393 indolpyr_decarb indo 99.6 4E-16 8.7E-21 167.4 10.4 151 157-326 356-527 (539)
88 PRK06466 acetolactate synthase 99.6 5.5E-16 1.2E-20 167.5 11.4 153 157-327 374-549 (574)
89 PRK07710 acetolactate synthase 99.6 4E-16 8.7E-21 168.4 10.2 152 157-327 375-549 (571)
90 PRK08266 hypothetical protein; 99.6 4.7E-16 1E-20 166.8 10.6 122 191-331 398-530 (542)
91 PRK08617 acetolactate synthase 99.6 5E-16 1.1E-20 167.0 10.7 118 191-328 410-538 (552)
92 PRK09124 pyruvate dehydrogenas 99.6 8.4E-16 1.8E-20 166.0 12.4 118 191-327 404-531 (574)
93 cd03376 TPP_PFOR_porB_like Thi 99.6 8.6E-16 1.9E-20 148.4 10.9 124 191-331 58-205 (235)
94 PRK08273 thiamine pyrophosphat 99.6 5.7E-16 1.2E-20 168.1 10.6 155 156-328 365-548 (597)
95 TIGR02720 pyruv_oxi_spxB pyruv 99.6 1E-15 2.2E-20 165.6 12.4 120 191-327 404-533 (575)
96 CHL00099 ilvB acetohydroxyacid 99.6 7.3E-16 1.6E-20 166.9 11.3 152 156-327 382-556 (585)
97 PRK06048 acetolactate synthase 99.6 6.8E-16 1.5E-20 166.3 11.0 151 157-327 366-539 (561)
98 PRK07064 hypothetical protein; 99.6 7.7E-16 1.7E-20 165.2 11.2 118 190-326 400-528 (544)
99 PRK06112 acetolactate synthase 99.6 9.7E-16 2.1E-20 165.6 11.9 151 157-327 387-561 (578)
100 PRK06456 acetolactate synthase 99.6 9.9E-16 2.1E-20 165.3 11.8 153 157-328 372-547 (572)
101 PLN02470 acetolactate synthase 99.6 6.9E-16 1.5E-20 167.1 10.2 117 191-327 422-558 (585)
102 PRK06882 acetolactate synthase 99.6 9.5E-16 2.1E-20 165.5 11.2 118 191-327 417-547 (574)
103 PRK08155 acetolactate synthase 99.6 1.1E-15 2.3E-20 164.9 11.4 118 191-327 415-544 (564)
104 PRK06457 pyruvate dehydrogenas 99.6 8.1E-16 1.8E-20 165.3 10.3 117 191-327 392-520 (549)
105 PRK08611 pyruvate oxidase; Pro 99.6 9.6E-16 2.1E-20 165.7 10.6 118 191-327 404-531 (576)
106 PRK08199 thiamine pyrophosphat 99.6 1.1E-15 2.3E-20 164.6 10.8 117 192-327 412-539 (557)
107 PRK08322 acetolactate synthase 99.6 1.5E-15 3.2E-20 163.1 11.5 118 191-327 402-529 (547)
108 PRK08978 acetolactate synthase 99.6 1.1E-15 2.4E-20 164.1 10.7 118 191-328 397-527 (548)
109 PRK05778 2-oxoglutarate ferred 99.6 7.8E-15 1.7E-19 146.3 15.8 135 194-349 69-224 (301)
110 TIGR00118 acolac_lg acetolacta 99.6 1.5E-15 3.3E-20 163.5 10.4 151 157-327 363-537 (558)
111 PRK07282 acetolactate synthase 99.6 1.3E-15 2.9E-20 164.3 9.5 150 157-327 369-542 (566)
112 PLN02573 pyruvate decarboxylas 99.6 2.1E-15 4.6E-20 163.2 10.1 118 191-326 424-552 (578)
113 PRK09628 oorB 2-oxoglutarate-a 99.6 8.2E-15 1.8E-19 144.6 13.4 117 194-327 67-202 (277)
114 PRK07789 acetolactate synthase 99.6 2.9E-15 6.2E-20 163.1 11.0 153 157-327 398-577 (612)
115 TIGR03394 indol_phenyl_DC indo 99.6 3.8E-15 8.3E-20 159.8 10.2 150 157-326 356-521 (535)
116 TIGR03254 oxalate_oxc oxalyl-C 99.6 1.1E-14 2.3E-19 156.8 11.5 117 191-327 413-539 (554)
117 PRK06276 acetolactate synthase 99.6 8.1E-15 1.7E-19 158.8 9.6 117 192-327 416-544 (586)
118 PRK09259 putative oxalyl-CoA d 99.6 1.6E-14 3.5E-19 156.0 11.4 116 191-327 420-547 (569)
119 PRK11869 2-oxoacid ferredoxin 99.5 5.2E-14 1.1E-18 138.9 13.4 118 192-326 57-193 (280)
120 TIGR03297 Ppyr-DeCO2ase phosph 99.5 4E-14 8.7E-19 144.7 12.7 132 194-346 220-354 (361)
121 cd02018 TPP_PFOR Thiamine pyro 99.5 2.1E-14 4.5E-19 139.0 9.8 123 193-326 62-203 (237)
122 PRK11866 2-oxoacid ferredoxin 99.5 3.7E-14 8E-19 140.0 11.1 118 192-326 56-192 (279)
123 PRK11867 2-oxoglutarate ferred 99.5 6.5E-14 1.4E-18 138.9 12.2 116 193-325 67-201 (286)
124 COG2609 AceE Pyruvate dehydrog 99.5 5.1E-12 1.1E-16 134.3 24.3 273 86-374 74-435 (887)
125 PRK07449 2-succinyl-5-enolpyru 99.5 4.3E-14 9.2E-19 152.5 7.9 115 192-326 422-549 (568)
126 TIGR02177 PorB_KorB 2-oxoacid: 99.5 1.7E-13 3.7E-18 135.7 11.2 117 192-326 50-186 (287)
127 TIGR03336 IOR_alpha indolepyru 99.4 7.3E-13 1.6E-17 143.9 13.2 159 150-325 355-529 (595)
128 PRK11865 pyruvate ferredoxin o 99.4 4.3E-12 9.4E-17 126.2 17.2 186 187-386 61-295 (299)
129 COG3961 Pyruvate decarboxylase 99.4 2.9E-12 6.3E-17 133.0 11.8 162 123-327 363-536 (557)
130 KOG4166 Thiamine pyrophosphate 99.3 2.4E-12 5.1E-17 130.4 8.5 153 157-330 472-651 (675)
131 KOG1185 Thiamine pyrophosphate 99.3 2.7E-11 5.9E-16 124.6 12.6 120 189-326 424-560 (571)
132 PLN02980 2-oxoglutarate decarb 99.3 5.1E-12 1.1E-16 150.7 8.3 118 191-328 755-891 (1655)
133 PF09364 XFP_N: XFP N-terminal 99.2 1.5E-11 3.2E-16 123.4 4.5 202 115-333 46-288 (379)
134 COG3962 Acetolactate synthase 99.1 4.1E-10 8.9E-15 115.5 12.4 158 123-326 395-575 (617)
135 COG3960 Glyoxylate carboligase 99.0 3.5E-10 7.6E-15 112.0 7.5 157 162-334 378-564 (592)
136 KOG1184 Thiamine pyrophosphate 98.9 6E-09 1.3E-13 108.3 8.3 118 192-326 412-539 (561)
137 COG1013 PorB Pyruvate:ferredox 98.8 1.4E-07 3E-12 94.2 16.0 119 191-326 66-204 (294)
138 cd03377 TPP_PFOR_PNO Thiamine 98.5 4.7E-06 1E-10 85.0 17.5 97 225-327 152-268 (365)
139 COG3957 Phosphoketolase [Carbo 98.3 9.5E-07 2.1E-11 95.1 5.6 172 114-303 58-255 (793)
140 COG4231 Indolepyruvate ferredo 98.0 3.3E-05 7.2E-10 82.9 10.7 120 187-324 420-552 (640)
141 COG1165 MenD 2-succinyl-6-hydr 97.4 0.00024 5.1E-09 75.5 6.4 110 200-329 427-549 (566)
142 TIGR02176 pyruv_ox_red pyruvat 97.4 0.0012 2.7E-08 77.2 12.2 97 225-327 952-1068(1165)
143 PRK13030 2-oxoacid ferredoxin 97.3 0.0008 1.7E-08 78.1 9.9 120 191-324 464-601 (1159)
144 PRK09193 indolepyruvate ferred 97.2 0.0019 4E-08 75.0 10.8 120 192-324 478-615 (1165)
145 PRK13029 2-oxoacid ferredoxin 97.0 0.003 6.4E-08 73.3 9.5 120 191-323 491-628 (1186)
146 cd06586 TPP_enzyme_PYR Pyrimid 96.2 0.037 7.9E-07 49.0 9.6 105 200-323 47-152 (154)
147 cd07039 TPP_PYR_POX Pyrimidine 96.2 0.055 1.2E-06 49.5 10.6 93 224-323 64-156 (164)
148 PF02776 TPP_enzyme_N: Thiamin 96.0 0.052 1.1E-06 49.7 9.7 93 226-324 67-160 (172)
149 cd07035 TPP_PYR_POX_like Pyrim 95.9 0.09 2E-06 46.9 10.5 89 228-323 64-153 (155)
150 TIGR03845 sulfopyru_alph sulfo 95.7 0.13 2.9E-06 46.8 10.9 108 198-324 44-153 (157)
151 cd07038 TPP_PYR_PDC_IPDC_like 95.5 0.11 2.3E-06 47.4 9.8 93 226-323 62-160 (162)
152 cd07034 TPP_PYR_PFOR_IOR-alpha 95.3 0.15 3.2E-06 45.8 9.9 91 226-323 67-158 (160)
153 PRK08659 2-oxoglutarate ferred 94.3 0.28 6.1E-06 50.9 10.0 167 122-333 7-177 (376)
154 PRK07119 2-ketoisovalerate fer 94.2 0.29 6.2E-06 50.4 9.8 114 200-332 60-176 (352)
155 cd07037 TPP_PYR_MenD Pyrimidin 94.1 0.29 6.2E-06 44.8 8.7 95 225-324 62-161 (162)
156 PRK08611 pyruvate oxidase; Pro 92.9 0.79 1.7E-05 50.1 11.1 94 224-324 69-162 (576)
157 TIGR03297 Ppyr-DeCO2ase phosph 92.7 0.38 8.2E-06 49.7 7.8 114 197-324 35-151 (361)
158 TIGR03710 OAFO_sf 2-oxoacid:ac 92.2 0.69 1.5E-05 50.6 9.4 111 200-327 249-362 (562)
159 PRK08366 vorA 2-ketoisovalerat 91.9 1.2 2.6E-05 46.6 10.3 111 200-330 61-171 (390)
160 TIGR03254 oxalate_oxc oxalyl-C 91.9 1 2.2E-05 48.9 10.3 95 225-324 67-162 (554)
161 PRK07064 hypothetical protein; 91.8 1.2 2.5E-05 48.2 10.6 95 225-324 68-164 (544)
162 TIGR03457 sulphoacet_xsc sulfo 91.8 1.4 3.1E-05 48.1 11.3 93 224-324 65-158 (579)
163 PRK06112 acetolactate synthase 91.7 1.3 2.8E-05 48.4 10.9 95 224-325 75-170 (578)
164 PRK06457 pyruvate dehydrogenas 91.7 1.4 3.1E-05 47.7 11.2 95 224-325 65-159 (549)
165 PRK07525 sulfoacetaldehyde ace 91.4 1.6 3.4E-05 47.8 11.2 92 225-324 70-162 (588)
166 PRK06456 acetolactate synthase 91.3 1.4 3E-05 48.0 10.6 92 226-324 71-163 (572)
167 COG0028 IlvB Thiamine pyrophos 91.3 1.2 2.6E-05 48.6 10.0 96 222-324 63-159 (550)
168 PRK09627 oorA 2-oxoglutarate-a 91.2 1 2.2E-05 46.8 9.1 115 200-333 59-176 (375)
169 PRK07979 acetolactate synthase 91.1 1.6 3.5E-05 47.6 11.0 95 224-325 68-163 (574)
170 PRK08978 acetolactate synthase 91.1 1.6 3.4E-05 47.3 10.8 94 224-325 64-159 (548)
171 PRK09259 putative oxalyl-CoA d 91.0 1.6 3.4E-05 47.7 10.6 94 225-324 74-169 (569)
172 PF01855 POR_N: Pyruvate flavo 90.8 0.95 2.1E-05 43.8 7.9 113 200-332 48-160 (230)
173 PRK07524 hypothetical protein; 90.8 2.1 4.5E-05 46.2 11.3 96 225-325 66-163 (535)
174 PRK06466 acetolactate synthase 90.7 2 4.4E-05 46.8 11.2 96 224-326 68-164 (574)
175 PRK06725 acetolactate synthase 90.7 1.9 4.1E-05 47.1 10.9 95 224-325 78-173 (570)
176 PRK07418 acetolactate synthase 90.5 2.1 4.6E-05 47.1 11.2 93 224-324 86-180 (616)
177 PRK07586 hypothetical protein; 90.5 1.8 3.9E-05 46.4 10.4 94 225-325 66-160 (514)
178 PLN02470 acetolactate synthase 90.4 1.6 3.4E-05 47.9 10.0 95 224-325 77-172 (585)
179 PRK07789 acetolactate synthase 90.3 2.3 4.9E-05 46.9 11.2 95 224-325 95-190 (612)
180 PRK08322 acetolactate synthase 90.1 1.8 4E-05 46.7 10.1 95 224-325 64-159 (547)
181 TIGR01504 glyox_carbo_lig glyo 90.0 2.1 4.7E-05 46.9 10.7 93 226-325 70-163 (588)
182 PRK08155 acetolactate synthase 90.0 2 4.4E-05 46.7 10.4 92 226-324 79-171 (564)
183 PRK06276 acetolactate synthase 89.9 2.4 5.1E-05 46.5 10.9 95 224-325 64-159 (586)
184 PRK08266 hypothetical protein; 89.9 2.6 5.7E-05 45.5 11.1 96 225-326 70-168 (542)
185 PRK07710 acetolactate synthase 89.9 2.2 4.7E-05 46.6 10.5 94 225-325 80-174 (571)
186 TIGR00118 acolac_lg acetolacta 89.8 3.1 6.7E-05 45.2 11.6 95 224-325 65-160 (558)
187 PRK09107 acetolactate synthase 89.7 2.1 4.6E-05 47.0 10.3 94 225-325 76-170 (595)
188 PRK06882 acetolactate synthase 89.7 2.3 4.9E-05 46.4 10.5 95 224-325 68-163 (574)
189 PRK08199 thiamine pyrophosphat 89.5 2.1 4.7E-05 46.4 10.2 93 225-324 73-166 (557)
190 PRK08273 thiamine pyrophosphat 89.4 1.8 3.9E-05 47.6 9.5 95 225-326 69-164 (597)
191 PRK12474 hypothetical protein; 89.3 2.7 5.8E-05 45.3 10.6 95 224-325 69-164 (518)
192 PRK08979 acetolactate synthase 89.3 2.2 4.8E-05 46.5 10.1 94 225-325 69-163 (572)
193 TIGR03394 indol_phenyl_DC indo 89.3 2.2 4.7E-05 46.3 9.9 97 224-325 64-164 (535)
194 PRK06965 acetolactate synthase 88.8 3.3 7.3E-05 45.3 11.0 93 225-325 86-180 (587)
195 cd07033 TPP_PYR_DXS_TK_like Py 88.6 4.3 9.4E-05 36.5 9.9 99 201-323 52-154 (156)
196 PRK06048 acetolactate synthase 88.4 4.3 9.3E-05 44.2 11.5 95 224-325 71-166 (561)
197 PRK07282 acetolactate synthase 88.4 4 8.6E-05 44.6 11.3 94 224-325 74-169 (566)
198 PRK11269 glyoxylate carboligas 88.3 3 6.4E-05 45.7 10.3 93 226-325 71-164 (591)
199 PRK09124 pyruvate dehydrogenas 88.2 4.3 9.4E-05 44.3 11.4 93 225-324 66-160 (574)
200 PRK05858 hypothetical protein; 88.0 3.4 7.3E-05 44.8 10.4 93 225-325 69-163 (542)
201 PRK08527 acetolactate synthase 87.8 4.2 9E-05 44.3 11.0 95 224-325 67-162 (563)
202 COG0674 PorA Pyruvate:ferredox 87.8 3.5 7.5E-05 42.7 9.8 111 199-328 58-168 (365)
203 TIGR02720 pyruv_oxi_spxB pyruv 87.3 5 0.00011 43.9 11.3 95 224-326 64-159 (575)
204 PRK08617 acetolactate synthase 86.9 4.4 9.6E-05 43.9 10.5 93 225-325 69-163 (552)
205 PRK07092 benzoylformate decarb 86.8 4.9 0.00011 43.4 10.7 96 224-325 74-170 (530)
206 CHL00099 ilvB acetohydroxyacid 86.6 5.3 0.00011 43.8 11.0 93 225-325 78-172 (585)
207 PRK09622 porA pyruvate flavodo 86.4 4.2 9.2E-05 42.7 9.7 107 200-327 68-177 (407)
208 TIGR02418 acolac_catab acetola 86.4 5.4 0.00012 43.1 10.8 94 225-325 63-157 (539)
209 PRK08327 acetolactate synthase 86.4 3.7 7.9E-05 44.9 9.6 95 225-324 77-179 (569)
210 PRK08367 porA pyruvate ferredo 86.4 4.9 0.00011 42.1 10.1 111 200-332 62-175 (394)
211 PLN02573 pyruvate decarboxylas 84.6 5.4 0.00012 43.7 9.8 97 224-325 79-181 (578)
212 PRK06546 pyruvate dehydrogenas 84.3 8.7 0.00019 42.1 11.2 93 226-325 69-161 (578)
213 cd01460 vWA_midasin VWA_Midasi 83.8 17 0.00037 36.0 12.0 86 226-312 166-259 (266)
214 PRK06154 hypothetical protein; 82.7 7.1 0.00015 42.6 9.7 92 226-326 84-176 (565)
215 TIGR00173 menD 2-succinyl-5-en 81.5 4.1 8.9E-05 42.8 7.1 96 224-325 64-165 (432)
216 KOG4166 Thiamine pyrophosphate 80.0 10 0.00022 40.1 9.0 94 222-323 153-248 (675)
217 TIGR00204 dxs 1-deoxy-D-xylulo 79.7 12 0.00026 41.6 10.2 102 200-323 364-467 (617)
218 cd07036 TPP_PYR_E1-PDHc-beta_l 78.7 14 0.00031 33.9 8.9 98 201-322 57-164 (167)
219 COG4032 Predicted thiamine-pyr 78.4 5.3 0.00012 36.0 5.6 107 199-323 53-161 (172)
220 TIGR00232 tktlase_bact transke 78.1 12 0.00027 41.7 9.8 80 235-323 430-512 (653)
221 TIGR03336 IOR_alpha indolepyru 76.5 13 0.00027 41.0 9.3 108 200-332 58-168 (595)
222 PTZ00089 transketolase; Provis 74.0 19 0.00041 40.3 9.8 90 225-323 429-519 (661)
223 PF02779 Transket_pyr: Transke 73.1 31 0.00067 31.6 9.6 103 200-323 60-170 (178)
224 PLN02980 2-oxoglutarate decarb 73.0 10 0.00022 47.0 8.0 93 224-324 365-465 (1655)
225 PLN02234 1-deoxy-D-xylulose-5- 69.3 29 0.00063 38.7 9.9 93 226-329 424-518 (641)
226 PRK12571 1-deoxy-D-xylulose-5- 69.1 27 0.00059 38.9 9.7 89 225-324 386-477 (641)
227 PRK11892 pyruvate dehydrogenas 68.9 29 0.00062 37.2 9.5 99 201-322 202-309 (464)
228 PRK05444 1-deoxy-D-xylulose-5- 67.8 37 0.00081 37.3 10.4 100 201-323 334-436 (580)
229 PLN02790 transketolase 67.6 32 0.0007 38.4 9.9 78 240-323 431-509 (654)
230 TIGR03393 indolpyr_decarb indo 66.6 31 0.00067 37.4 9.3 96 225-326 65-166 (539)
231 PRK12315 1-deoxy-D-xylulose-5- 66.4 23 0.00051 38.9 8.4 89 225-323 345-434 (581)
232 PLN02582 1-deoxy-D-xylulose-5- 65.5 42 0.0009 37.8 10.2 90 224-323 422-513 (677)
233 PLN02683 pyruvate dehydrogenas 65.3 45 0.00098 34.4 9.8 100 200-323 86-195 (356)
234 TIGR02176 pyruv_ox_red pyruvat 61.8 56 0.0012 39.2 10.9 113 200-332 63-175 (1165)
235 PRK12753 transketolase; Review 61.3 53 0.0011 36.9 10.1 83 234-323 435-518 (663)
236 PRK05899 transketolase; Review 59.7 48 0.001 36.8 9.4 80 235-323 401-483 (624)
237 PLN02225 1-deoxy-D-xylulose-5- 59.1 60 0.0013 36.7 9.9 90 224-323 447-538 (701)
238 PTZ00182 3-methyl-2-oxobutanat 56.8 68 0.0015 33.1 9.4 99 200-322 94-202 (355)
239 smart00861 Transket_pyr Transk 54.4 70 0.0015 28.7 8.1 100 201-323 62-164 (168)
240 PRK11032 hypothetical protein; 53.3 49 0.0011 30.4 6.8 42 354-395 30-71 (160)
241 PRK07449 2-succinyl-5-enolpyru 50.7 44 0.00094 36.4 7.2 34 225-261 74-107 (568)
242 PRK12754 transketolase; Review 50.4 93 0.002 35.0 9.7 82 235-323 436-518 (663)
243 PRK13010 purU formyltetrahydro 47.7 70 0.0015 32.1 7.5 54 223-295 93-149 (289)
244 COG0021 TktA Transketolase [Ca 47.6 70 0.0015 35.6 7.9 78 241-323 441-518 (663)
245 PRK09212 pyruvate dehydrogenas 47.2 84 0.0018 31.9 8.2 63 252-324 110-173 (327)
246 COG1240 ChlD Mg-chelatase subu 45.1 1.5E+02 0.0032 29.4 9.1 101 198-306 151-257 (261)
247 PLN02331 phosphoribosylglycina 45.0 96 0.0021 29.5 7.7 54 226-296 2-58 (207)
248 PF13519 VWA_2: von Willebrand 44.0 76 0.0016 27.4 6.5 72 224-306 99-170 (172)
249 PF09851 SHOCT: Short C-termin 43.0 36 0.00078 22.3 3.1 28 352-380 3-30 (31)
250 cd01451 vWA_Magnesium_chelatas 43.0 2.3E+02 0.0049 25.5 9.7 70 225-303 99-174 (178)
251 TIGR00655 PurU formyltetrahydr 41.7 1.1E+02 0.0023 30.6 7.7 54 223-295 84-140 (280)
252 PRK13683 hypothetical protein; 40.1 44 0.00095 27.5 3.8 42 285-330 12-53 (87)
253 CHL00144 odpB pyruvate dehydro 39.5 1.9E+02 0.004 29.5 9.3 32 287-322 139-171 (327)
254 PF04273 DUF442: Putative phos 37.7 89 0.0019 26.7 5.6 76 242-325 17-95 (110)
255 COG1303 Uncharacterized protei 37.2 1.3E+02 0.0027 27.8 6.6 49 274-325 18-66 (179)
256 PRK05647 purN phosphoribosylgl 37.0 1.3E+02 0.0028 28.3 7.2 56 225-296 3-60 (200)
257 PF10925 DUF2680: Protein of u 36.9 1.3E+02 0.0028 22.9 5.8 32 355-386 21-52 (59)
258 COG0299 PurN Folate-dependent 36.9 1.7E+02 0.0037 27.9 7.8 84 225-326 2-88 (200)
259 PRK09404 sucA 2-oxoglutarate d 36.8 5E+02 0.011 30.6 13.0 108 201-324 658-771 (924)
260 COG2205 KdpD Osmosensitive K+ 36.1 76 0.0016 36.4 6.1 94 224-325 249-343 (890)
261 PF08640 U3_assoc_6: U3 small 35.9 74 0.0016 25.8 4.6 42 359-405 9-50 (83)
262 COG4231 Indolepyruvate ferredo 35.3 2.1E+02 0.0045 32.0 9.1 164 122-331 16-181 (640)
263 COG3453 Uncharacterized protei 33.5 51 0.0011 29.0 3.4 45 277-325 48-96 (130)
264 PRK06027 purU formyltetrahydro 33.4 1.6E+02 0.0035 29.4 7.6 55 222-295 88-145 (286)
265 COG1107 Archaea-specific RecJ- 33.0 58 0.0013 35.9 4.5 53 241-302 404-458 (715)
266 COG0777 AccD Acetyl-CoA carbox 32.1 1.3E+02 0.0029 30.1 6.5 66 193-263 130-206 (294)
267 cd00640 Trp-synth-beta_II Tryp 32.1 1.9E+02 0.0041 27.4 7.6 40 245-296 66-105 (244)
268 PRK13406 bchD magnesium chelat 31.6 3E+02 0.0065 30.5 9.9 98 198-308 473-582 (584)
269 COG3958 Transketolase, C-termi 31.5 2.2E+02 0.0047 28.9 7.9 108 195-323 55-165 (312)
270 PLN02527 aspartate carbamoyltr 30.2 5.5E+02 0.012 25.9 10.8 172 81-259 6-185 (306)
271 COG0769 MurE UDP-N-acetylmuram 30.1 3.9E+02 0.0085 28.7 10.3 148 153-332 302-450 (475)
272 PF06707 DUF1194: Protein of u 28.8 4.7E+02 0.01 25.0 9.4 79 223-309 115-198 (205)
273 COG3707 AmiR Response regulato 27.6 3.9E+02 0.0084 25.4 8.5 104 241-380 65-174 (194)
274 TIGR02442 Cob-chelat-sub cobal 24.6 2.9E+02 0.0063 30.8 8.4 87 198-293 538-632 (633)
275 PF02979 NHase_alpha: Nitrile 24.5 1.4E+02 0.0031 28.0 5.0 39 354-392 9-52 (188)
276 COG0022 AcoB Pyruvate/2-oxoglu 23.9 5.4E+02 0.012 26.3 9.2 104 201-327 62-176 (324)
277 PF08312 cwf21: cwf21 domain; 23.6 2.1E+02 0.0047 20.6 4.7 31 354-385 13-43 (46)
278 TIGR00639 PurN phosphoribosylg 22.9 3.5E+02 0.0075 25.3 7.4 54 225-294 2-57 (190)
279 PF07295 DUF1451: Protein of u 22.6 1.7E+02 0.0038 26.4 5.0 41 352-392 18-58 (146)
280 PLN03013 cysteine synthase 22.3 2.7E+02 0.0059 29.6 7.2 10 250-259 196-205 (429)
281 cd08325 CARD_CASP1-like Caspas 22.1 1.9E+02 0.0041 23.3 4.8 39 350-388 14-52 (83)
282 PRK10490 sensor protein KdpD; 21.9 3E+02 0.0065 32.0 8.0 94 224-325 251-345 (895)
283 smart00115 CASc Caspase, inter 21.5 2.7E+02 0.0059 26.8 6.6 67 255-323 10-79 (241)
284 TIGR00239 2oxo_dh_E1 2-oxoglut 21.3 5.5E+02 0.012 30.2 9.8 112 200-328 659-779 (929)
285 PLN02828 formyltetrahydrofolat 20.9 5E+02 0.011 25.8 8.3 59 223-295 70-131 (268)
286 cd01453 vWA_transcription_fact 20.7 6.5E+02 0.014 22.9 9.0 69 224-306 107-176 (183)
287 PRK06702 O-acetylhomoserine am 20.5 1.6E+02 0.0034 31.3 5.1 45 99-146 63-107 (432)
288 PF10415 FumaraseC_C: Fumarase 20.4 1.1E+02 0.0025 22.7 2.9 19 357-375 28-46 (55)
289 KOG2882 p-Nitrophenyl phosphat 20.2 2E+02 0.0044 29.2 5.4 53 232-298 36-88 (306)
No 1
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=8.9e-95 Score=747.72 Aligned_cols=432 Identities=84% Similarity=1.293 Sum_probs=402.9
Q ss_pred CcccccccccccccccCCcCCCCCCCCCCCCCCCCCCcccccccceeeccCCCCCCCccccchhhhHHHHHHHhhcC-Cc
Q 013928 1 MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLRVNSVHSNQGNVRRRLPVVAVSEVVKEKKVK-SI 79 (434)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 79 (434)
|+++|+.+++.+++|.+++. .+....+++.+.+.+++|+|++|+++.....+++ |.+++..+.++...+...... +.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (433)
T PLN02374 1 MAAAFAATSLLVPVPARSSR-DDAPSSPLRGALKRSSAFTGSTSKLSSLRGLNAA-NGRRRSTVVAVSAVVKEKNSKASA 78 (433)
T ss_pred CccccccccccccccccccC-CCCCCCccccccccchhhhccccccccccCcccc-ccchhcchhcccccccccCCCCCC
Confidence 78899999999999999986 6777788999999999999999997665555555 788888887777766311111 22
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCH
Q 013928 80 SNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPA 159 (434)
Q Consensus 80 ~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~ 159 (434)
.++.+++|+++++|++|+++|.||+++.++|++|+++|++|+++||||+++|++.+|+++||++++||+|+++|++|+++
T Consensus 79 ~~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~ 158 (433)
T PLN02374 79 SDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPA 158 (433)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccc
Q 013928 160 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG 239 (434)
Q Consensus 160 ~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G 239 (434)
.++|+|++|+.+|+++|++|+||++++++++.+.+++||+++|.|+|+|+|.|+++...+...++++|||++|||++++|
T Consensus 159 ~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG 238 (433)
T PLN02374 159 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNG 238 (433)
T ss_pred HHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccC
Confidence 99999999999999999999999999999999999999999999999999999986443333568899999999999999
Q ss_pred hHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCE
Q 013928 240 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT 319 (434)
Q Consensus 240 ~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~ 319 (434)
.|||+||+|+.|+|||||||+||+|+|+++...++..+++++++++||+++++|||+|+.+|++++++|+++++++++|+
T Consensus 239 ~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~ 318 (433)
T PLN02374 239 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPT 318 (433)
T ss_pred hHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999988887788999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCCCCCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcc
Q 013928 320 LVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRS 399 (434)
Q Consensus 320 lIev~t~R~~gHs~~D~~~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~~ 399 (434)
|||+.|||++||+++|++.||+++|+++|.++|||.+|+++|+++|++|++++++|+++++++|++++++|+++|.|+++
T Consensus 319 LIe~~tyR~~GHs~~D~~~YR~~~e~~~~~~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~ 398 (433)
T PLN02374 319 LVECETYRFRGHSLADPDELRDPAEKAHYAARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPLPPRS 398 (433)
T ss_pred EEEEEEEecCCcCCCCccccCCHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCCCCCCCCcccccCCCcccccCCC
Q 013928 400 QLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV 434 (434)
Q Consensus 400 ~l~~~vya~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (434)
++|++||+++++++|+|||+|+||+|+||+|||+|
T Consensus 399 ~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (433)
T PLN02374 399 QLLENVFADPKGFGIGPDGRYRCEDPKFTAGTAQV 433 (433)
T ss_pred HHHhccccCCcCCccCCCcceeccCCCcccccccC
Confidence 99999999999999999999999999999999997
No 2
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.5e-84 Score=650.22 Aligned_cols=325 Identities=50% Similarity=0.817 Sum_probs=313.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCC-CEEEccCcchHHHHHcCCCHH
Q 013928 82 LLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE-DSVVSTYRDHVHALSKGVPAR 160 (434)
Q Consensus 82 ~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~-D~v~~~yR~~~~~La~G~~~~ 160 (434)
..+++++++++|++|+++|.||+++.+++++||+.||+|++.||||+++|++.+|+++ ||++|+||+|+++|++|+++.
T Consensus 22 ~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~~YR~h~~~l~~G~~~~ 101 (358)
T COG1071 22 AALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVPLK 101 (358)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeecccCccccceecCCCHH
Confidence 4689999999999999999999999999999999999999999999999999999965 999999999999999999999
Q ss_pred HHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccch
Q 013928 161 AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQ 240 (434)
Q Consensus 161 ~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~ 240 (434)
++|++++|+.+|+|+|++|+||+++++.++.+.++++|.|+|.|+|+|+|.|+++ ..+.+++|++|||++++|+
T Consensus 102 ~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~------~~~~Va~~~~GDGat~qG~ 175 (358)
T COG1071 102 EIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRG------TKDGVAVAFFGDGATNQGD 175 (358)
T ss_pred HHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhC------CCCcEEEEEecCCccccch
Confidence 9999999999999999999999999999999999999999999999999999983 1445999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEE
Q 013928 241 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTL 320 (434)
Q Consensus 241 ~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~l 320 (434)
|||+||+|+.|+|||||||+||+|+||++...+...+.+..++.+||+|+++|||+|+.+|++++++|++++|+++||+|
T Consensus 176 FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtL 255 (358)
T COG1071 176 FHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTL 255 (358)
T ss_pred HHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEE
Confidence 99999999999999999999999999988887877777888999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCC-CCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcc
Q 013928 321 VECETYRFRGHSLADP-DELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRS 399 (434)
Q Consensus 321 Iev~t~R~~gHs~~D~-~~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~~ 399 (434)
||+.|||+.|||++|+ .+||+++|.++|+.+|||.+++++|++.|++|++++++|+++++++|++++++|+++|.|+++
T Consensus 256 IE~~tYR~~~HS~sDd~~~YRskeE~~~~~~~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ea~e~a~~~p~P~~~ 335 (358)
T COG1071 256 IEAVTYRYGGHSTSDDPSKYRSKEEVEEWKKRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVDEAVEFAEASPYPDVS 335 (358)
T ss_pred EEEEEeecCCCCCCCCccccCCHHHHHHHhccChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChh
Confidence 9999999999999988 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCC
Q 013928 400 QLLENVFADPKGF 412 (434)
Q Consensus 400 ~l~~~vya~~~~~ 412 (434)
++|++||++.+..
T Consensus 336 ~~~~~Vy~~~~~~ 348 (358)
T COG1071 336 ELFEDVYAEGPPH 348 (358)
T ss_pred HhhhcccccCChh
Confidence 9999999988765
No 3
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=1.4e-80 Score=630.42 Aligned_cols=334 Identities=43% Similarity=0.753 Sum_probs=320.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHHH
Q 013928 82 LLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARA 161 (434)
Q Consensus 82 ~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~~ 161 (434)
..+++++++++|+.|+++|.||+++.+++++|++.||+|++.||||+++|++.+|+++||+|++||+|+++|++|+++.+
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~ 104 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLE 104 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchH
Q 013928 162 VMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF 241 (434)
Q Consensus 162 i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~ 241 (434)
+|+|++|+.+|+++|++|+||+++++.++.+.++++|.++|+|+|+|+|.|++ +.+.+++|++|||++++|.|
T Consensus 105 ~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~-------~~~~v~v~~~GDGa~~eG~~ 177 (362)
T PLN02269 105 VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYN-------KEENVAFALYGDGAANQGQL 177 (362)
T ss_pred HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHh-------CCCCeEEEEECCCCcccCHH
Confidence 99999999999999999999999999999999999999999999999999987 56789999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEE
Q 013928 242 FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLV 321 (434)
Q Consensus 242 ~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lI 321 (434)
||+||+|+.|+||+||||+||+|+++++...+...++++.++ +++|+++|||+|+++|+++++.|++++|+ ++|+||
T Consensus 178 ~Ealn~A~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~--~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lI 254 (362)
T PLN02269 178 FEALNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRG--DYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVL 254 (362)
T ss_pred HHHHHHhhccCcCEEEEEeCCCEeccCchhhhccchHHHHhh--cCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEE
Confidence 999999999999999999999999999988887777787654 67999999999999999999999999999 999999
Q ss_pred EEEEecCCCCCCCCCC-CCCCHHHHHHHh-cCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcc
Q 013928 322 ECETYRFRGHSLADPD-ELRDPAEKARYA-ARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRS 399 (434)
Q Consensus 322 ev~t~R~~gHs~~D~~-~yR~~~e~~~~~-~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~~ 399 (434)
|++|||++||+++|++ .||+++|++.|. ++|||.+|+++|++.|+++++++++|+++++++|++++++|+++|.|+++
T Consensus 255 e~~tyR~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~A~~~p~P~~~ 334 (362)
T PLN02269 255 EMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAKAKESPMPDPS 334 (362)
T ss_pred EEecCcCCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 9999999999999986 799999999998 58999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCC-CCCCCCCcccccC-C
Q 013928 400 QLLENVFADPKG-FGIGPDGRYRCED-P 425 (434)
Q Consensus 400 ~l~~~vya~~~~-~~~~~~~~~~~~~-~ 425 (434)
++|++||+++.+ ..|++||+|+||+ |
T Consensus 335 ~~~~~vy~~~~~~~~~~~~~~~~~~~~~ 362 (362)
T PLN02269 335 ELFTNVYVKGLGVESYGADRKEVRVVLP 362 (362)
T ss_pred HHHhhcccCCCCCceecCCcceecCcCC
Confidence 999999998866 4799999999998 5
No 4
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=4.9e-81 Score=606.03 Aligned_cols=341 Identities=46% Similarity=0.797 Sum_probs=329.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCH
Q 013928 80 SNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPA 159 (434)
Q Consensus 80 ~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~ 159 (434)
....+++|+++++|++|+++|+||..+.++|++.+|+||+|++.||||+++|+-.+|.+.|.|+++||+|++.+.+|+++
T Consensus 52 ~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~ 131 (394)
T KOG0225|consen 52 TSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSV 131 (394)
T ss_pred ceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccH
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccc
Q 013928 160 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG 239 (434)
Q Consensus 160 ~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G 239 (434)
.++|+||+|+.+|+++|.|||||++.+ +|.+++|++|.|+|.+.|+|+|.||+ ..+.+++++.|||+.+||
T Consensus 132 ~~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIVGAQiPLGaGia~A~kY~-------~~~~v~~alYGDGAaNQG 202 (394)
T KOG0225|consen 132 REVLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIVGAQIPLGAGIAFAQKYN-------REDAVCFALYGDGAANQG 202 (394)
T ss_pred HHHHHHHhccccccccCCCcceeeecc--cccCccceeccCCCccccHHHHHHhc-------cCCceEEEEeccccccch
Confidence 999999999999999999999999988 49999999999999999999999998 457899999999999999
Q ss_pred hHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCE
Q 013928 240 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT 319 (434)
Q Consensus 240 ~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~ 319 (434)
+++|++|||.+|+||+||||+||.|+++|+..+....+++++++ .| +|+++|||+|+.+|.+|.+.|.+++++++||+
T Consensus 203 Q~fEa~NMA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPi 280 (394)
T KOG0225|consen 203 QVFEAFNMAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPI 280 (394)
T ss_pred hHHHHhhHHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCE
Confidence 99999999999999999999999999999999999999999999 45 99999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCCC-CCCCCHHHHHHHh-cCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 013928 320 LVECETYRFRGHSLADP-DELRDPAEKARYA-ARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPP 397 (434)
Q Consensus 320 lIev~t~R~~gHs~~D~-~~yR~~~e~~~~~-~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~ 397 (434)
|+|+.|||++|||++|| ..||+.+|+++.+ ++|||..++++|++.++.|++|+++|+++++++|++++++|+++|.|+
T Consensus 281 lmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai~k~irkeVdeav~~A~~~p~p~ 360 (394)
T KOG0225|consen 281 LMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAFATASPEPE 360 (394)
T ss_pred EEEEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 99999999999999999 5799999999887 789999999999999999999999999999999999999999999999
Q ss_pred cchhhhcccCCCCCCCCCCCCcccccCCCcccccC
Q 013928 398 RSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTA 432 (434)
Q Consensus 398 ~~~l~~~vya~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (434)
+++|+.|||..++++.+.+ |+|+|+.+.|..|++
T Consensus 361 ~~eL~~dvy~~~~~~~~~g-~~~~~~~~~~~k~~~ 394 (394)
T KOG0225|consen 361 PSELFTDVYVKGTGFEIRG-GRIDEEKWQFFKGVA 394 (394)
T ss_pred HHHHHHHhhccCCCccccC-cccccccccccccCC
Confidence 9999999999999998888 999999999999875
No 5
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=9.6e-79 Score=614.39 Aligned_cols=327 Identities=69% Similarity=1.105 Sum_probs=314.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHHH
Q 013928 82 LLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARA 161 (434)
Q Consensus 82 ~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~~ 161 (434)
..+++++++++|+.|+++|.||+++.+++++|++.||+|++.||||+++|++.+|+++||+|++||+|+++|++|+++.+
T Consensus 15 ~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~ 94 (341)
T CHL00149 15 NNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPPKN 94 (341)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchH
Q 013928 162 VMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF 241 (434)
Q Consensus 162 i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~ 241 (434)
+|+|++|+.+|+++|++|+||+++++.++.+.+++||+++|+|+|+|+|.|+++...+...++++|||++|||++++|.|
T Consensus 95 ~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~ 174 (341)
T CHL00149 95 VMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQF 174 (341)
T ss_pred HHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHH
Confidence 99999999999999999999999999999999999999999999999999988543333347899999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEE
Q 013928 242 FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLV 321 (434)
Q Consensus 242 ~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lI 321 (434)
||+||+|++|+||+||||+||+|+++++...++..+++++++++||+++++|||+|+.+|++++++|++++|.+++|+||
T Consensus 175 ~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lI 254 (341)
T CHL00149 175 FECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTLI 254 (341)
T ss_pred HHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 99999999999999999999999999998777778899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcchh
Q 013928 322 ECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQL 401 (434)
Q Consensus 322 ev~t~R~~gHs~~D~~~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~~~l 401 (434)
|+.|||++||+++|++.||+++|++.|.++|||.+|+++|++.|+++++++++|+++++++|++++++|+++|.|+++++
T Consensus 255 ev~tyR~~gHs~~D~~~YR~~~e~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~~~~ 334 (341)
T CHL00149 255 EALTYRFRGHSLADPDELRSKQEKEAWVARDPIKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPEPNISDL 334 (341)
T ss_pred EEEEecCCCcCCCCCccCCCHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCC
Q 013928 402 LENVFAD 408 (434)
Q Consensus 402 ~~~vya~ 408 (434)
|++||++
T Consensus 335 ~~~vy~~ 341 (341)
T CHL00149 335 KKYLFAD 341 (341)
T ss_pred HhhcccC
Confidence 9999975
No 6
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=6.1e-77 Score=596.15 Aligned_cols=315 Identities=57% Similarity=0.973 Sum_probs=307.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHHHHHHH
Q 013928 86 KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSE 165 (434)
Q Consensus 86 ~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~~i~~e 165 (434)
+|+++++|++|+++|.||+++.+++++|++.||+|++.||||+++|++.+|+++||+|++||+|+++|++|+++.++|+|
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHH
Q 013928 166 LFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECL 245 (434)
Q Consensus 166 l~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaL 245 (434)
++|+.+|+++|++|++|+.+++.++.+.+++||+++|+|+|+|+|.|++ +++++|||++|||++++|.|+|+|
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~-------~~~~~vv~~~GDGa~~~g~~~eal 153 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYR-------GNDNVTACFFGDGAANQGQFYESF 153 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHh-------CCCCEEEEEeCCCcccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999887 578999999999999999999999
Q ss_pred HHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928 246 NMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 246 n~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t 325 (434)
|+|++|++|+||||+||+|+++++...+...+++++++++||+++++|||+|+++|++++++|+++++++++|+|||+.|
T Consensus 154 n~A~~~~lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t 233 (315)
T TIGR03182 154 NMAALWKLPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKT 233 (315)
T ss_pred HHhhccCcCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeC
Confidence 99999999999999999999999887777788999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcchhhhcc
Q 013928 326 YRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENV 405 (434)
Q Consensus 326 ~R~~gHs~~D~~~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~~~l~~~v 405 (434)
||.+||+++|++.||+++|++.|.++|||.+|+++|++.|+++++++++++++++++|++++++|++.|.|+++++|+||
T Consensus 234 ~R~~gHs~~D~~~Yr~~~e~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a~~~p~p~~~~~~~~v 313 (315)
T TIGR03182 234 YRFRGHSMSDPAKYRSKEEVEEWRKRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPEPPVEELYTDV 313 (315)
T ss_pred CcCCCCCCCCccccCCHHHHHHHHhcCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 013928 406 FA 407 (434)
Q Consensus 406 ya 407 (434)
|+
T Consensus 314 y~ 315 (315)
T TIGR03182 314 YA 315 (315)
T ss_pred cC
Confidence 96
No 7
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=6.9e-71 Score=557.79 Aligned_cols=314 Identities=37% Similarity=0.606 Sum_probs=298.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHHH
Q 013928 82 LLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARA 161 (434)
Q Consensus 82 ~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~~ 161 (434)
+.+++++++++|++|+++|.||+++.+++++|++ ||+|+++||||+++|++.+|+++|+++++||+|+++|++|+++.+
T Consensus 19 ~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~h~~~l~~G~~~~~ 97 (341)
T TIGR03181 19 PDLSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLVE 97 (341)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-ecccCCCChHHHHHHHHHHcCCCCEEEcchhhHHHHHHcCCCHHH
Confidence 4689999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchH
Q 013928 162 VMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF 241 (434)
Q Consensus 162 i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~ 241 (434)
+|++++|+.+|.+ ++++.++.+.+++||+++|.|+|+|+|.|+. +++++|||++|||++++|.|
T Consensus 98 ~~ae~~g~~~g~~---------~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~-------~~~~~vv~~~GDGa~~~g~~ 161 (341)
T TIGR03181 98 ILLYWRGDERGSW---------DPEGVNILPPNIPIGTQYLHAAGVAYALKLR-------GEDNVAVTYFGDGGTSEGDF 161 (341)
T ss_pred HHHHhcCcCcCCC---------CchhcCccCCCchHhcchhHHHhHHHHHHhh-------CCCCEEEEEecCCccccChH
Confidence 9999999876531 2567899999999999999999999999887 67899999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEE
Q 013928 242 FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLV 321 (434)
Q Consensus 242 ~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lI 321 (434)
+|+||+|++|+|||||||+||+|+++++...+...+++++++++||+++++|||+|+.+|++++++|+++++.+++|+||
T Consensus 162 ~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lI 241 (341)
T TIGR03181 162 YEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLI 241 (341)
T ss_pred HHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 99999999999999999999999999887666667899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCC-CCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcch
Q 013928 322 ECETYRFRGHSLADPD-ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQ 400 (434)
Q Consensus 322 ev~t~R~~gHs~~D~~-~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~~~ 400 (434)
|+.|||..||+++|++ .||+++|++.|.++|||.+|+++|++.|+++++++++|+++++++|++++++|+++|.|++++
T Consensus 242 ev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~a~~~p~P~~~~ 321 (341)
T TIGR03181 242 EAVTYRLGPHTTADDPTRYRTKEEEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALALPPPPVDD 321 (341)
T ss_pred EEEeecCCCCCCCCCCccCCCHHHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 9999999999999865 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCC
Q 013928 401 LLENVFADPKGF 412 (434)
Q Consensus 401 l~~~vya~~~~~ 412 (434)
+|+|||++.++.
T Consensus 322 ~~~~vy~~~~~~ 333 (341)
T TIGR03181 322 IFDHVYAELPPE 333 (341)
T ss_pred HHhhcccCCCHH
Confidence 999999976543
No 8
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=1.1e-68 Score=531.61 Aligned_cols=292 Identities=51% Similarity=0.857 Sum_probs=281.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHHHHHHHHhcCCC
Q 013928 92 LYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKAT 171 (434)
Q Consensus 92 ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~~i~~el~g~~~ 171 (434)
+|++|+++|.||+++.+++++|++.||+|++.||||+++|++.+|+++||++++||+|+++|++|+++.++|+|++|+.+
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHc
Q 013928 172 GCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW 251 (434)
Q Consensus 172 g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~ 251 (434)
++++|++|++|+++++.++.+.+|+||+++|+|+|+|+|.|+. +++++|||++|||++++|.|+|+|++|+++
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~-------~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~ 153 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYR-------GEDRVAVCFFGDGATNEGDFHEALNFAALW 153 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHh-------CCCCEEEEEeCCCccccchHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999887 578999999999999999999999999999
Q ss_pred CCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCC
Q 013928 252 KLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH 331 (434)
Q Consensus 252 ~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gH 331 (434)
+||+||||+||+|+++++...+.+.+++.+++++||+++++|||+|++++++++++|+++++.+++|+|||+.|||..||
T Consensus 154 ~lPvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gH 233 (293)
T cd02000 154 KLPVIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGH 233 (293)
T ss_pred CCCEEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCC
Confidence 99999999999999999887777778999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-CCCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 013928 332 SLAD-PDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFA 390 (434)
Q Consensus 332 s~~D-~~~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A 390 (434)
+++| +..||+++|++.|.++||+.+|+++|+++|++|++++++++++++++|++++++|
T Consensus 234 s~~dd~~~Yr~~~e~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a 293 (293)
T cd02000 234 STSDDPSRYRTKEEVEEWKKRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293 (293)
T ss_pred CCCCCcccCCCHHHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 9665 5689999999999999999999999999999999999999999999999998875
No 9
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=5.1e-69 Score=535.44 Aligned_cols=297 Identities=45% Similarity=0.741 Sum_probs=265.2
Q ss_pred HHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHHHHHHHHhcCCCCCc
Q 013928 95 DMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCC 174 (434)
Q Consensus 95 ~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~~i~~el~g~~~g~~ 174 (434)
+|+++|.||+++..++.++++.||+|++.||||++++++.+|+++||++++||||++.|++|+++.++|+|++|+..+..
T Consensus 2 ~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~~ 81 (300)
T PF00676_consen 2 RMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGHG 81 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTSTT
T ss_pred chHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCCC
Confidence 56666777777777777778899999999999999999999999999999999999999999999999999999995554
Q ss_pred cCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCC
Q 013928 175 RGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP 254 (434)
Q Consensus 175 ~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP 254 (434)
.|+. +.|+.++..++.+.++++|.++|+|+|+|+|.|++ +.+.+++|++|||++++|.|||+||+|+.|+||
T Consensus 82 g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~-------~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lP 153 (300)
T PF00676_consen 82 GGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYR-------GKDGVVVCFFGDGATSQGDFHEALNLAALWKLP 153 (300)
T ss_dssp TTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHT-------TSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTS
T ss_pred CCcc-ccccccccceeeeccccccccCccccchhHhhhhc-------CCceeEEEEecCcccccCccHHHHHHHhhccCC
Confidence 4444 45566777789999999999999999999999977 578999999999999999999999999999999
Q ss_pred eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928 255 IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 334 (434)
Q Consensus 255 vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~ 334 (434)
|||||+||+|+|+|+...+++..++++++++||+|+++|||+|+++|++++++|++++|+++||+|||++|||++||+++
T Consensus 154 vifvveNN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~ 233 (300)
T PF00676_consen 154 VIFVVENNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSES 233 (300)
T ss_dssp EEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTT
T ss_pred eEEEEecCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCHHHHHHHhc-CChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcc
Q 013928 335 DP-DELRDPAEKARYAA-RDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRS 399 (434)
Q Consensus 335 D~-~~yR~~~e~~~~~~-~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~~ 399 (434)
|+ ..||+++|++.|++ +|||.+|+++|++.|++|++++++|+++++++|++++++|+++|.|++|
T Consensus 234 Dd~~~yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~e 300 (300)
T PF00676_consen 234 DDPTFYRSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVEFAEASPEPDPE 300 (300)
T ss_dssp SCGGGTSHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHSHBC-G-
T ss_pred CCccccCCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 95 56998999988765 5999999999999999999999999999999999999999999999975
No 10
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=7.1e-62 Score=468.48 Aligned_cols=328 Identities=28% Similarity=0.447 Sum_probs=313.4
Q ss_pred CccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCC
Q 013928 78 SISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGV 157 (434)
Q Consensus 78 ~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~ 157 (434)
+...+.++.|..++||++|.+...+|..+-+-++||+| +||.++.|+||+-+|.+++|.++|.|++.||.-|.+|++|.
T Consensus 77 ~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRi-SFYmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRgf 155 (432)
T KOG1182|consen 77 KSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRI-SFYMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGF 155 (432)
T ss_pred cccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceE-EEEEeccchhhhhhhhhhhCCcccccccccccCceEEEcCc
Confidence 34567899999999999999999999999999999998 69999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc
Q 013928 158 PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN 237 (434)
Q Consensus 158 ~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~ 237 (434)
++++++++++|...+..+|+++++|++++++|+...+++|..++|.|+|+|+|.|+++ +.+..+||++|||+.+
T Consensus 156 tle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k~~~------~nnac~V~yfGdG~aS 229 (432)
T KOG1182|consen 156 TLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALKMRK------KNNACAVTYFGDGAAS 229 (432)
T ss_pred cHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhhhcc------cCCeEEEEEecCCccc
Confidence 9999999999999999999999999999999999999999999999999999999874 4568999999999999
Q ss_pred cchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCC
Q 013928 238 NGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEG 317 (434)
Q Consensus 238 ~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~g 317 (434)
+|++|.++|+|+.+..||||+|-||+|+|||++++|.....++-++.+||+..++|||+|+.+||.|+++|.+.+....+
T Consensus 230 EGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~r 309 (432)
T KOG1182|consen 230 EGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQR 309 (432)
T ss_pred ccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred CEEEEEEEecCCCCCCCCC-CCCCCHHHHHHHhc-CChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 013928 318 PTLVECETYRFRGHSLADP-DELRDPAEKARYAA-RDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAP 395 (434)
Q Consensus 318 P~lIev~t~R~~gHs~~D~-~~yR~~~e~~~~~~-~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~ 395 (434)
|+|||+.|||...||++|+ .+||+.+|++.|.. +.||.+|++++..+|+|+|+.-.+++++++++|-++++.|++-++
T Consensus 310 PvliEamtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~rk~vl~a~~~aEk~~K 389 (432)
T KOG1182|consen 310 PVLIEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELRKNIRKKVLEAIAAAEKKEK 389 (432)
T ss_pred chhhhhhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999976 57999999999964 689999999999999999999999999999999999999999999
Q ss_pred CCcchhhhcccCCCCCC
Q 013928 396 PPRSQLLENVFADPKGF 412 (434)
Q Consensus 396 p~~~~l~~~vya~~~~~ 412 (434)
|...++|+|||++++..
T Consensus 390 ~~~~~lF~dVYd~~P~~ 406 (432)
T KOG1182|consen 390 PNLTELFEDVYDEMPKN 406 (432)
T ss_pred CCHHHHHHHHhhhhhHh
Confidence 99999999999987653
No 11
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=2.5e-59 Score=517.24 Aligned_cols=328 Identities=19% Similarity=0.248 Sum_probs=290.7
Q ss_pred hhHHHHHHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHH------hcCC
Q 013928 65 VAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIK------LLKK 138 (434)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~------~L~~ 138 (434)
...+.||+++||.... .+++++++++|+.|+++|.||+++.++|.++|++| ++|||++++|+.. .+++
T Consensus 169 ~~er~Wl~~~iE~~~~--~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf~----~eG~Ea~i~gl~~li~~a~~lg~ 242 (924)
T PRK09404 169 PEERRWLQQRIESGRP--SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFS----LEGGESLIPMLDEIIRRAGKLGV 242 (924)
T ss_pred HHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc----ccchhhHHHHHHHHHHHHHhCCC
Confidence 3678999999996544 89999999999999999999999999999999985 5999999999998 4558
Q ss_pred CCEEEc-cCcchHHHHH--cCCCHHHHHHHHhcCC-------CCCcc----------CCCCCcccccCCCcccCCccccc
Q 013928 139 EDSVVS-TYRDHVHALS--KGVPARAVMSELFGKA-------TGCCR----------GQGGSMHMFSKEHNLLGGFAFIG 198 (434)
Q Consensus 139 ~D~v~~-~yR~~~~~La--~G~~~~~i~~el~g~~-------~g~~~----------G~ggs~h~~~~~~~~~~~~g~lG 198 (434)
+|+|++ +||||+++|+ +|+++.++|+|++|+. +|+++ |++|++|+... ...+++|
T Consensus 243 ~D~vigmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~-----~npShle 317 (924)
T PRK09404 243 KEIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLA-----FNPSHLE 317 (924)
T ss_pred CCEEEecCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeecc-----CCccccc
Confidence 999999 7999999999 5999999999999997 33333 44555665433 2458999
Q ss_pred ccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCcccc-ccchHHHHHHHHHHcCCC---eEEEEEcCCccCcccccccc
Q 013928 199 EGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRAT 274 (434)
Q Consensus 199 ~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vI~VV~NN~y~is~~~~~~~ 274 (434)
.+.|+|+|+|+|.|+++... ......++||++|||++ ++|.|||+||+|+.|+|| +||||+||+|+++|+...++
T Consensus 318 av~Pva~G~A~A~q~~~~~~-~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~ 396 (924)
T PRK09404 318 IVNPVVEGSVRARQDRRGDG-QDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDR 396 (924)
T ss_pred cccCeehhHHHHHHHhcCCc-ccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhc
Confidence 99999999999999874200 01112689999999998 799999999999999998 99999999999999988888
Q ss_pred cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhc-CCh
Q 013928 275 SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAA-RDP 353 (434)
Q Consensus 275 ~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~~~~~-~DP 353 (434)
+..+++++|++||+|+++|||+|+++|+++++.|++++|+++||+|||++|||.+||+++|++.||++.|++.|++ +||
T Consensus 397 s~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~yr~p~ey~~~~~~~dp 476 (924)
T PRK09404 397 STPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTT 476 (924)
T ss_pred cchhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCcCCCHHHHHHHHhcCCH
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999999985 699
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcchhhhcccC
Q 013928 354 ITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFA 407 (434)
Q Consensus 354 l~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~~~l~~~vya 407 (434)
+.+|+++|++.|++|++++++|+++++++|++++++|++. .+.+.++.+|.
T Consensus 477 i~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~---~~~~~~~~~~~ 527 (924)
T PRK09404 477 RELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEW---RPADWLAGDWS 527 (924)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc---Ccccccccccc
Confidence 9999999999999999999999999999999999999875 24556666664
No 12
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=1.2e-53 Score=470.40 Aligned_cols=327 Identities=18% Similarity=0.227 Sum_probs=293.1
Q ss_pred hhHHHHHHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCC------
Q 013928 65 VAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------ 138 (434)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~------ 138 (434)
...+.||+++||... ...+++++.+++++.|+.+..||+++.+.|...|+||. .|.|++.+++..+++.
T Consensus 168 ~~~r~Wl~~~iE~~~-~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRFsl----EG~eslip~l~~~i~~~~~~gv 242 (929)
T TIGR00239 168 TEEKRWLQQRIESGE-RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRFSL----EGLDALVPMLKEIIRHSVNSGT 242 (929)
T ss_pred HHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeec----ccHHHHHHHHHHHHHHHHHcCC
Confidence 457899999999766 77899999999999999999999999999999999986 9999999988888763
Q ss_pred CCEEEcc-CcchHHHHH--cCCCHHHHHHHHhcCCCCC-ccCCCCC-ccccc-----------CCCcccCCcccccccch
Q 013928 139 EDSVVST-YRDHVHALS--KGVPARAVMSELFGKATGC-CRGQGGS-MHMFS-----------KEHNLLGGFAFIGEGIP 202 (434)
Q Consensus 139 ~D~v~~~-yR~~~~~La--~G~~~~~i~~el~g~~~g~-~~G~ggs-~h~~~-----------~~~~~~~~~g~lG~glp 202 (434)
+|+|++. ||||++.|+ +|++++++|+|+.|+..+. +.|+|+. +|++. ....+.++.++|+.+.|
T Consensus 243 ~d~v~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~P 322 (929)
T TIGR00239 243 RDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSP 322 (929)
T ss_pred CeEEeccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccc
Confidence 8999996 999999999 9999999999999987653 3466766 89884 34566788999999999
Q ss_pred hhHHHHHHHHHHHhhhhhcCCCceEEEEeCcccc-ccchHHHHHHHHHHcCCCe---EEEEEcCCccCcccccccccCch
Q 013928 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPI---VFVVENNLWAIGMSHLRATSDPQ 278 (434)
Q Consensus 203 ~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPv---I~VV~NN~y~is~~~~~~~~~~d 278 (434)
+|+|.|+|.|+++... ..+.+.++||++|||++ ++|.|||+||+|..|++|+ ||||+||+|+++|+...+++..+
T Consensus 323 va~G~ArA~q~~~~~~-~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~ 401 (929)
T TIGR00239 323 VVIGSTRARLDRLNDS-PESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPY 401 (929)
T ss_pred hhhhHHHHHHHhcCCc-ccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccC
Confidence 9999999999874200 11236789999999997 7999999999999999996 99999999999998878877888
Q ss_pred hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCC-CCCHHHHHHHhc-CChHHH
Q 013928 279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDE-LRDPAEKARYAA-RDPITA 356 (434)
Q Consensus 279 ~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~-yR~~~e~~~~~~-~DPl~~ 356 (434)
++++|++||+|+++|||+|+++|+.+++.|++++|+++||+|||++|||.+||+++|++. ||+ .|++.|++ +||+.+
T Consensus 402 ~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~~~~i~~~~dPi~~ 480 (929)
T TIGR00239 402 CSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LMYQKIKKHPTPRKV 480 (929)
T ss_pred HHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HHHHHHHhCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987 665 88888874 699999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCc
Q 013928 357 LKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPR 398 (434)
Q Consensus 357 ~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~ 398 (434)
|+++|++.|++|++++++|+++++++|+++++.+...+.|..
T Consensus 481 ~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~~~~~ 522 (929)
T TIGR00239 481 YADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNT 522 (929)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccc
Confidence 999999999999999999999999999999999887655443
No 13
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=5.7e-49 Score=382.09 Aligned_cols=237 Identities=22% Similarity=0.313 Sum_probs=215.8
Q ss_pred HHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCC------CCEEEcc-CcchHHHHH--cCCCHHHHHHHHhcCCC-
Q 013928 102 FEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------EDSVVST-YRDHVHALS--KGVPARAVMSELFGKAT- 171 (434)
Q Consensus 102 fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~------~D~v~~~-yR~~~~~La--~G~~~~~i~~el~g~~~- 171 (434)
||+++.+.|...|++| .+|+|++++++..+|++ +|+++++ ||||++.|+ +|++++++|+|++|+.+
T Consensus 1 ~e~f~~~~f~~~krfs----~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~ 76 (265)
T cd02016 1 FEQFLATKFPGQKRFG----LEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEF 76 (265)
T ss_pred ChhhHHHhcCCCeEEE----ecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCC
Confidence 6899999999999876 59999999999999998 7999997 999999999 99999999999999877
Q ss_pred --CCccCCCCCcccccCC-----------CcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCcccc-c
Q 013928 172 --GCCRGQGGSMHMFSKE-----------HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-N 237 (434)
Q Consensus 172 --g~~~G~ggs~h~~~~~-----------~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~-~ 237 (434)
+.+.+++.++|++... ..+.++.++||.++|+|+|+|+|.|+++. +....+.++||++|||++ +
T Consensus 77 ~~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~--~~~~~~~v~v~~~GDgA~~~ 154 (265)
T cd02016 77 PEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRG--DGERDKVLPILIHGDAAFAG 154 (265)
T ss_pred CCCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcC--CccCCCeEEEEEecCccccC
Confidence 4445667789997654 45678899999999999999999998841 011246799999999996 6
Q ss_pred cchHHHHHHHHHHcCCC---eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHc
Q 013928 238 NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR 314 (434)
Q Consensus 238 ~G~~~EaLn~A~~~~LP---vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~ 314 (434)
+|.|+|+||+|.+|++| +||||+||+|+++|+...+++..++++++++||+|+++|||+|+++|++++++|++++|+
T Consensus 155 qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~ 234 (265)
T cd02016 155 QGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQK 234 (265)
T ss_pred CChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 999999999999999998888889999999999999999999999999999999999999
Q ss_pred cCCCEEEEEEEecCCCCCCCCCCCCCCHHH
Q 013928 315 GEGPTLVECETYRFRGHSLADPDELRDPAE 344 (434)
Q Consensus 315 ~~gP~lIev~t~R~~gHs~~D~~~yR~~~e 344 (434)
+++|+|||++|||++||+++|++.|++|.+
T Consensus 235 g~gp~lIe~~tYR~~GHse~D~p~~t~p~m 264 (265)
T cd02016 235 FKKDVVIDLVCYRRHGHNELDEPSFTQPLM 264 (265)
T ss_pred cCCCEEEEEEEecCCCCCCcCCccccCCCc
Confidence 999999999999999999999999998864
No 14
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=2.6e-38 Score=341.42 Aligned_cols=322 Identities=20% Similarity=0.248 Sum_probs=280.7
Q ss_pred hhHHHHHHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCC------
Q 013928 65 VAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------ 138 (434)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~------ 138 (434)
--++.|||++||.+ ..++++++-+.+++++--...||.++...|..+|+|+. +|-|.+.+.+..+|..
T Consensus 473 peqr~W~Q~rvE~~--~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkRFsl----EG~Es~iplld~~~~~aa~~~l 546 (1228)
T PRK12270 473 PEQRRWLQERVERP--HEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKRFSL----EGGESLIPLLDAVLDQAAEHGL 546 (1228)
T ss_pred HHHHHHHHHHhhCC--CCCCCHHHHHHHHHHhhhHHHHHHHHhhhcccceeeee----cchhhHHHHHHHHHHHHHhcCC
Confidence 35789999999954 68889999999999999999999999999999999876 9999999988888864
Q ss_pred CCEEEc-cCcchHHHHH--cCCCHHHHHHHHhcCCCCC-ccCCCC-CcccccCC-----------CcccCCcccccccch
Q 013928 139 EDSVVS-TYRDHVHALS--KGVPARAVMSELFGKATGC-CRGQGG-SMHMFSKE-----------HNLLGGFAFIGEGIP 202 (434)
Q Consensus 139 ~D~v~~-~yR~~~~~La--~G~~~~~i~~el~g~~~g~-~~G~gg-s~h~~~~~-----------~~~~~~~g~lG~glp 202 (434)
+.++++ .|||+.+.|+ .|.+..+||+||-|..+.. ..|.|. .+|++... ..+..+.++|...-|
T Consensus 547 ~evvigm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdp 626 (1228)
T PRK12270 547 DEVVIGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDP 626 (1228)
T ss_pred ceEEecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcch
Confidence 456777 8999999999 7999999999999986533 333332 47776431 223577899999999
Q ss_pred hhHHHHHHHHHHHhhhhhcCCCceEEEEeCcccc-ccchHHHHHHHHHHcCCC---eEEEEEcCCccCcccccccccCch
Q 013928 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQ 278 (434)
Q Consensus 203 ~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vI~VV~NN~y~is~~~~~~~~~~d 278 (434)
+.-|...|.+..-.. ...+-....|+++||++| ++|+++|.||++..|++| +||||.||+|+++|.....+++.+
T Consensus 627 VleGivRakQd~l~~-g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y 705 (1228)
T PRK12270 627 VLEGIVRAKQDRLDK-GEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEY 705 (1228)
T ss_pred Hhhhhhhhhhhhhcc-cccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchh
Confidence 999999997765321 111234568999999997 599999999999999999 999999999999999988888889
Q ss_pred hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhcCCh-HHHH
Q 013928 279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDP-ITAL 357 (434)
Q Consensus 279 ~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~~~~~~DP-l~~~ 357 (434)
..++++++++|+++|||+|+++|.++++.|+++++++++|++||+.|||.+||++.|++.+++|.++..+.++.. -+.|
T Consensus 706 ~td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~~svrk~y 785 (1228)
T PRK12270 706 ATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLY 785 (1228)
T ss_pred hHHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhcchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877654 6789
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhC
Q 013928 358 KKYLIESSLASEAELKAIEKKIDEVVEDAVEFADES 393 (434)
Q Consensus 358 ~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~ 393 (434)
.+.|+.+|.+|++|.+++.++++++++.+++..++.
T Consensus 786 te~Ligrgdit~ee~e~~l~dy~~~Le~~f~e~re~ 821 (1228)
T PRK12270 786 TEALIGRGDITVEEAEQALRDYQGQLERVFNEVREA 821 (1228)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998877753
No 15
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-33 Score=293.68 Aligned_cols=334 Identities=20% Similarity=0.275 Sum_probs=285.6
Q ss_pred hhHHHHHHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCC------
Q 013928 65 VAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------ 138 (434)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~------ 138 (434)
.-+..||.++|+.+ ....++.|+.+-||.++.++-.||+++...|...|+||. +|.|.+.+|+..+++.
T Consensus 228 ~eqcnWir~k~EtP-~~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRFGL----EGcE~lIP~mK~iiDrS~elGV 302 (1017)
T KOG0450|consen 228 LEQCNWIRQKFETP-GPMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRFGL----EGCEVLIPAMKTIIDRSSELGV 302 (1017)
T ss_pred HHHhHHHHHhccCC-CccccCHHHHHHHHHHHHHhhHHHHHHhhhCCccccccc----cchhhhhhHHHHHhhhhhhcCc
Confidence 44678999999986 356789999999999999999999999999999999997 9999999999988875
Q ss_pred CCEEEc-cCcchHHHHHc--CCCHHHHHHHHhcCCCCCccCCCC-Cccccc---CC---------CcccCCcccccccch
Q 013928 139 EDSVVS-TYRDHVHALSK--GVPARAVMSELFGKATGCCRGQGG-SMHMFS---KE---------HNLLGGFAFIGEGIP 202 (434)
Q Consensus 139 ~D~v~~-~yR~~~~~La~--G~~~~~i~~el~g~~~g~~~G~gg-s~h~~~---~~---------~~~~~~~g~lG~glp 202 (434)
++.|++ .|||+.+.|+. -.++++||.|+.|..+.+. |.|. .+|++- +. +.+..+.++|...-|
T Consensus 303 e~iviGMpHRGRLNvL~NVvRKpl~qIfseF~g~~~~De-GSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DP 381 (1017)
T KOG0450|consen 303 ESIVIGMPHRGRLNVLANVVRKPLEQIFSEFSGLEAADE-GSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDP 381 (1017)
T ss_pred hheEecCCccchhHHHHHHHhhHHHHHHHhccCCCCCcC-CCCceeeeeccccccccccCCceeEEEEecCchhhcccCc
Confidence 688888 89999999984 4699999999999654332 3222 466541 11 123577899999999
Q ss_pred hhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCC---eEEEEEcCCccCcccccccccCch
Q 013928 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQ 278 (434)
Q Consensus 203 ~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LP---vI~VV~NN~y~is~~~~~~~~~~d 278 (434)
+.+|...|.++.... ..+.....|.++||++|. +|.++|.+.+..+.++- .|+||.|||++++|.....+++|+
T Consensus 382 VV~GKtrA~q~y~~D--~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspY 459 (1017)
T KOG0450|consen 382 VVMGKTRAEQFYTGD--EEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPY 459 (1017)
T ss_pred eeechHHHHHHhccc--cccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCC
Confidence 999999999887531 124456789999999985 99999999987776665 899999999999999998999999
Q ss_pred hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhcC-ChHHHH
Q 013928 279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAAR-DPITAL 357 (434)
Q Consensus 279 ~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~~~~~~-DPl~~~ 357 (434)
+.++|++.++|.++|+++|+++|.-+++-|.++...+++.++|+++|||.+||++.|.+.|+.|.+++.++++ ..+..|
T Consensus 460 cTDvar~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~FTQPlMYk~I~k~~~~l~~Y 539 (1017)
T KOG0450|consen 460 CTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPMFTQPLMYKQIRKHKPVLQKY 539 (1017)
T ss_pred chhHHHHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCccccchHHHHHHHcCCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 568899
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcchhhhccc
Q 013928 358 KKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVF 406 (434)
Q Consensus 358 ~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~~~l~~~vy 406 (434)
.+.|+.+|.+++++++++.+++....+++++.++..-.-...+.++.-|
T Consensus 540 ~ekLl~egtvs~~evd~~~~k~~~I~eeafe~sKd~~~~~~rdWL~spW 588 (1017)
T KOG0450|consen 540 AEKLLSEGTVSQQEVDEEIKKYDNILEEAFERSKDYKPLHIRDWLDSPW 588 (1017)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhcCCC
Confidence 9999999999999999999999999999999988743222244444433
No 16
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.4e-33 Score=303.71 Aligned_cols=234 Identities=22% Similarity=0.191 Sum_probs=194.0
Q ss_pred HHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC---CCCEEE--cc
Q 013928 71 VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK---KEDSVV--ST 145 (434)
Q Consensus 71 ~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~---~~D~v~--~~ 145 (434)
++++|+.+..-..++.++|.++-.. +|.+ -++..++..|++|++.|+ +.++++.++. |.|+++ +.
T Consensus 2 ~l~~~~~p~d~~~l~~~~l~~l~~~---ir~~-----~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~g 71 (581)
T PRK12315 2 YLEKINSPADLKKLSLDELEQLASE---IRTA-----LLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVS 71 (581)
T ss_pred chhhcCCHHHHhhCCHHHHHHHHHH---HHHH-----HHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecC
Confidence 4678888777788888888776643 5544 233456778999999999 4444555555 899999 89
Q ss_pred CcchHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928 146 YRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (434)
Q Consensus 146 yR~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~ 225 (434)
||+|++.|++|.++..++.+++|+.+|++++.+ +.|.+ ...|+.|.++++|+|+|+|.|++ +.+.
T Consensus 72 hr~~~~~l~~G~~~~~~~~~~~g~~~G~~~~~~-s~~~~-------~~~g~~~~~ls~A~G~A~A~k~~-------~~~~ 136 (581)
T PRK12315 72 HQSYPHKMLTGRKEAFLDPDHYDDVTGYTNPEE-SEHDF-------FTVGHTSTSIALATGLAKARDLK-------GEKG 136 (581)
T ss_pred CchHHHHHHcCCccchhhHHHcCCCCCCCCCCC-CCCCC-------cCCCcHHHHHHHHHHHHHHHHhc-------CCCC
Confidence 999999999999999999999999999988766 44432 24578899999999999999887 4578
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccc---------cccCchhhhccccCCCcEEEE-eC
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR---------ATSDPQIYKKGPAFGMPGFHV-DG 295 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~---------~~~~~d~~~~a~a~Gi~~~~V-dG 295 (434)
+|||++|||++++|.+||+||+|+.|++|+||||+||+|+++++... +....++..++++|||+++.| ||
T Consensus 137 ~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG 216 (581)
T PRK12315 137 NIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDG 216 (581)
T ss_pred eEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCC
Confidence 99999999999999999999999999999999999999999977632 223345677899999999998 99
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCC
Q 013928 296 MDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL 333 (434)
Q Consensus 296 ~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~ 333 (434)
+|+.++++++++| +..++|++|+++|+|++|...
T Consensus 217 ~D~~~l~~a~~~a----~~~~gP~~i~~~T~kG~G~~~ 250 (581)
T PRK12315 217 NDIESLIEAFKEV----KDIDHPIVLHIHTLKGKGYQP 250 (581)
T ss_pred CCHHHHHHHHHHH----HhCCCCEEEEEEeecCCCCCh
Confidence 9999999977764 457899999999999999753
No 17
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.1e-31 Score=290.74 Aligned_cols=320 Identities=19% Similarity=0.219 Sum_probs=279.1
Q ss_pred hhHHHHHHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCC------
Q 013928 65 VAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------ 138 (434)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~------ 138 (434)
...++||+++||. ..+.++.|+.+.+|+.+..+..||.++...|...|+||. +|.|++.+++..+++.
T Consensus 155 ~~~~~Wl~~riE~--~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRFsl----EG~eslip~l~~~i~~~~~~G~ 228 (906)
T COG0567 155 PEEKRWLQERIES--GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRFSL----EGGESLIPMLDELIDRAGKQGV 228 (906)
T ss_pred HHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccccc----cchhhHHHHHHHHHHHHHhcCc
Confidence 3578999999998 678899999999999999999999999999999999986 9999999999888863
Q ss_pred CCEEEc-cCcchHHHHH--cCCCHHHHHHHHhcCCCCC-ccCCCCCcccccC----------CCcccCCcccccccchhh
Q 013928 139 EDSVVS-TYRDHVHALS--KGVPARAVMSELFGKATGC-CRGQGGSMHMFSK----------EHNLLGGFAFIGEGIPVA 204 (434)
Q Consensus 139 ~D~v~~-~yR~~~~~La--~G~~~~~i~~el~g~~~g~-~~G~ggs~h~~~~----------~~~~~~~~g~lG~glp~A 204 (434)
.++|++ .|||+.+.|+ .|.+++.+|.||.|+.... ..|+. .+|++.. .+.+..+.++|....|+.
T Consensus 229 ~~vviGMaHRGRLNvL~nvlgKp~~~if~eF~g~~~~~~~sGDV-KYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV 307 (906)
T COG0567 229 KEVVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPDLSGDV-KYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVV 307 (906)
T ss_pred ceEEecccccchHHHHHHHhCCCHHHHHHHhCCCCCCCCccccc-ccccccccccccCCCeeEEEecCCcchhhhhchhh
Confidence 788888 8999999998 7999999999999975322 12221 4666421 122356789999999999
Q ss_pred HHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCC---eEEEEEcCCccCcccccccccCchhh
Q 013928 205 TGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIY 280 (434)
Q Consensus 205 vGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LP---vI~VV~NN~y~is~~~~~~~~~~d~~ 280 (434)
.|.+.|.+..... ........+.++||.++. +|.+.|.||+....+.. .|+||.||+.+++|.....+++++..
T Consensus 308 ~G~vRa~Qd~~~d--~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~T 385 (906)
T COG0567 308 EGSVRAKQDRLGD--TERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCT 385 (906)
T ss_pred hcchHhhhhhhcc--CccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCC
Confidence 9999998766321 112234567999999985 99999999999988876 89999999999999988888899999
Q ss_pred hccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhcC-ChHHHHHH
Q 013928 281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAAR-DPITALKK 359 (434)
Q Consensus 281 ~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~~~~~~-DPl~~~~~ 359 (434)
++++.+++|+++|+|.||+++..+.+.|++++..++++++|++.|||.+||+++|.+.++.|.+++.++++ .+...|.+
T Consensus 386 DvAKm~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs~TqP~mY~~I~~h~t~r~~ya~ 465 (906)
T COG0567 386 DVAKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQPLMYQKIKKHPTVRKLYAD 465 (906)
T ss_pred ChhhccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCccccccccCHHHHHHHhcCCChhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876 68889999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhC
Q 013928 360 YLIESSLASEAELKAIEKKIDEVVEDAVEFADES 393 (434)
Q Consensus 360 ~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~ 393 (434)
.|+++|++++++.+++.++++..++.........
T Consensus 466 ~Lv~~gvis~~~~~~~~~~~r~~L~~~~~~~~~~ 499 (906)
T COG0567 466 KLIAEGVISEEEADELVNDYRDALDQGFEVVKEY 499 (906)
T ss_pred HHHhhccccHHHHHHHHHHHHHHhhhhhhHHhHH
Confidence 9999999999999999999999999887766553
No 18
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.9e-32 Score=275.26 Aligned_cols=324 Identities=20% Similarity=0.271 Sum_probs=270.6
Q ss_pred HHHHHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCC------CCE
Q 013928 68 SEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------EDS 141 (434)
Q Consensus 68 ~~~~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~------~D~ 141 (434)
++|+..+++.- ....+.+|++.++-+.|+++..||.++...|.+-|+.| +.|-|.+.+-+..+|+. .|.
T Consensus 139 r~W~a~nFE~l-~~e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvKRYG----gEGAESM~aFF~eLl~~sa~~~ie~v 213 (913)
T KOG0451|consen 139 REWLARNFETL-DQEQLGKEERCEIAELMLKSQAFDNFLATKFPTVKRYG----GEGAESMLAFFWELLRDSAQANIEHV 213 (913)
T ss_pred HHHHHHHHHHH-HHHHhhHHHHHHHHHHHHhhhhHHHHHHhccchhhhhc----cccHHHHHHHHHHHHHHHHhcCcceE
Confidence 46676666653 24568899999999999999999999999999999987 59999998777777763 788
Q ss_pred EEc-cCcchHHHHH--cCCCHHHHHHHHhcCCCCCc----cCCCCCccccc--------CC--CcccCCcccccccchhh
Q 013928 142 VVS-TYRDHVHALS--KGVPARAVMSELFGKATGCC----RGQGGSMHMFS--------KE--HNLLGGFAFIGEGIPVA 204 (434)
Q Consensus 142 v~~-~yR~~~~~La--~G~~~~~i~~el~g~~~g~~----~G~ggs~h~~~--------~~--~~~~~~~g~lG~glp~A 204 (434)
|++ .|||+...|. ..++|..+|+.+.|...-+. .|+.- .|+.+ .+ ..+.++.+++....|+|
T Consensus 214 iigmpHRGRlnLlt~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVl-SHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVA 292 (913)
T KOG0451|consen 214 IIGMPHRGRLNLLTALLNFPPAKMFRKLSGASEFPEDIEAMGDVL-SHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVA 292 (913)
T ss_pred EEeccccCcchHHHHHhcCCHHHHHHHhcCcccCchhhhHHHHHH-HHhhhhhhhcccCCceEEEecCChhhhhccCchh
Confidence 888 8999999886 78999999999999865331 22221 22211 11 13467889999999999
Q ss_pred HHHHHHHHHHHhhhh--h-----cCCCceEEEEeCccccc-cchHHHHHHHHHHcCCC---eEEEEEcCCccCccccccc
Q 013928 205 TGAAFTSKYRREVLK--E-----ADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRA 273 (434)
Q Consensus 205 vGaA~A~k~~~~~~~--~-----~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LP---vI~VV~NN~y~is~~~~~~ 273 (434)
+|.+.+.+....... . .+.....+.++|||+|. +|+++|+++++-..... .|++|.||+.+++++....
T Consensus 293 mGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rG 372 (913)
T KOG0451|consen 293 MGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRG 372 (913)
T ss_pred hcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCccccc
Confidence 999999776643211 0 11122457789999985 99999999998766655 7999999999999999888
Q ss_pred ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhcCCh
Q 013928 274 TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDP 353 (434)
Q Consensus 274 ~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~~~~~~DP 353 (434)
+++..++++++++++++++|+|+|+++|.++.+-|+++-|++++.++|++.|||.+||++.|++.|++|-+++...+|..
T Consensus 373 RSs~ycsDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~ftspvmyk~v~aReS 452 (913)
T KOG0451|consen 373 RSSAYCSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPTFTSPVMYKEVEARES 452 (913)
T ss_pred ccchhhhHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCccccChhHHHHHHhhhc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 013928 354 IT-ALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPP 397 (434)
Q Consensus 354 l~-~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~ 397 (434)
++ .|.+.|++.|++|++++++++.++.+.+.+.++.+....+|+
T Consensus 453 vPdlya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~ 497 (913)
T KOG0451|consen 453 VPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQPPP 497 (913)
T ss_pred ccHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCccCCCc
Confidence 65 679999999999999999999999999999999888754444
No 19
>PRK12754 transketolase; Reviewed
Probab=99.94 E-value=2.3e-25 Score=242.04 Aligned_cols=143 Identities=24% Similarity=0.277 Sum_probs=126.2
Q ss_pred CcccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928 188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL 263 (434)
Q Consensus 188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~ 263 (434)
.++...+|++|+|++.|+|+|+|.|+++.+++..+ .+.+|+|++|||++++|.+||++++|+.|+|| +|+||+||+
T Consensus 107 pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~ 186 (663)
T PRK12754 107 AGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNG 186 (663)
T ss_pred CCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 46778899999999999999999999875555433 37899999999999999999999999999999 889999999
Q ss_pred ccCcccccccccCchhhhccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 334 (434)
Q Consensus 264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~~-VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~ 334 (434)
|++++++.... ..++.+++++|||++++ |||+|+.++.+|+++|.. ..++|++|+++|++++|.+..
T Consensus 187 ~~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~---~~~~Pt~I~~~T~~g~G~~~~ 254 (663)
T PRK12754 187 ISIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNK 254 (663)
T ss_pred CccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCcccc
Confidence 99999987765 57999999999999999 899999999887766542 257899999999999999854
No 20
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.93 E-value=6.1e-25 Score=239.54 Aligned_cols=143 Identities=25% Similarity=0.335 Sum_probs=124.4
Q ss_pred CcccCCcccccccchhhHHHHHHHHHHHhhhhhc---CCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928 188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL 263 (434)
Q Consensus 188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~---~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~ 263 (434)
.++...+|++|+|++.|+|+|+|.|+++.+++.. ..+.+|+|++|||++++|.+||++++|+.|+|| +|+||+||+
T Consensus 103 ~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~ 182 (653)
T TIGR00232 103 AGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNR 182 (653)
T ss_pred CCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 4677789999999999999999999886544321 247889999999999999999999999999999 888999999
Q ss_pred ccCcccccccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHcc-CCCEEEEEEEecCCCCCCCC
Q 013928 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRG-EGPTLVECETYRFRGHSLAD 335 (434)
Q Consensus 264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~-~gP~lIev~t~R~~gHs~~D 335 (434)
|++++++.... ..++.+++++|||++++| ||+|+.++.+|+++| +.. ++|++|+++|+|++|.+..+
T Consensus 183 ~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a----~~~~~~P~~I~~~T~~g~G~~~~e 251 (653)
T TIGR00232 183 ISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEA----KASKDKPTLIEVTTTIGFGSPNKA 251 (653)
T ss_pred eeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHH----HhCCCCCEEEEEEeeecccCcccC
Confidence 99999987765 578999999999999999 999999998866544 455 48999999999999987543
No 21
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.5e-24 Score=228.15 Aligned_cols=283 Identities=19% Similarity=0.236 Sum_probs=192.4
Q ss_pred CCEEEccCcchHHHHH------cC--CCHHHH--HHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHH
Q 013928 139 EDSVVSTYRDHVHALS------KG--VPARAV--MSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAA 208 (434)
Q Consensus 139 ~D~v~~~yR~~~~~La------~G--~~~~~i--~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA 208 (434)
.|.++.+ -||+-+|. .| ++++++ |+|+-++.+|+.- +....++...+|+||+|++.|+|+|
T Consensus 59 RDRFVLS-aGHgSmllYsllhl~Gy~ls~edLk~FRQ~~SkTpGHPE--------~~~t~GVe~TTGPLGQGianAVGmA 129 (663)
T COG0021 59 RDRFVLS-AGHGSMLLYSLLHLTGYDLSLEDLKNFRQLGSKTPGHPE--------YGHTPGVEATTGPLGQGLANAVGMA 129 (663)
T ss_pred CccEEec-CCchhHHHHHHHHHccCCCCHHHHHhhccCCCCCCCCCC--------cCCCCCeEeccCccchhHHHHHHHH
Confidence 4544433 26776543 34 577777 7777777776541 1223467788999999999999999
Q ss_pred HHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCcccccccccCchhhhccc
Q 013928 209 FTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATSDPQIYKKGP 284 (434)
Q Consensus 209 ~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~~~~~d~~~~a~ 284 (434)
+|.++....+++++ -|+.|+|++|||++++|+.+|+..+|+.++|. +|++.++|.++|...+.... +.|..++++
T Consensus 130 lAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f-~ed~~~Rfe 208 (663)
T COG0021 130 LAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF-TEDVAKRFE 208 (663)
T ss_pred HHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCccccc-chhHHHHHH
Confidence 99999988876544 46889999999999999999999999999999 88899999999988776554 679999999
Q ss_pred cCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCC-CCCCCCC----CHHHHHHHhc---CC--h
Q 013928 285 AFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL-ADPDELR----DPAEKARYAA---RD--P 353 (434)
Q Consensus 285 a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~-~D~~~yR----~~~e~~~~~~---~D--P 353 (434)
+|||.++ .+||+|++++..|+++|.. ..++|++|+|+|..++|-+. .+..++. .++|++..++ .+ |
T Consensus 209 AyGW~vi~~~DG~D~e~I~~Ai~~Ak~---~~dkPtlI~~kTiIG~Gsp~kegt~~~HGapLg~~ev~~~k~~lgw~~~~ 285 (663)
T COG0021 209 AYGWNVIRVIDGHDLEAIDKAIEEAKA---STDKPTLIIVKTIIGKGSPNKEGTHKVHGAPLGEEEVAAAKKALGWEPEP 285 (663)
T ss_pred hcCCeEEEecCCCCHHHHHHHHHHHHh---cCCCCeEEEEEeeeecCCCCcCCCccccCCCCCHHHHHHHHHHhCCCCCc
Confidence 9999999 7899999999887666542 36799999999999999876 3333322 3455544322 12 2
Q ss_pred ----HHHHH--HHHHHcCCCCHHHHHHHHHHHHHH---HHHHHHHhhhCCCCCcchhhhcccCC-CC-CCCCCCCCc---
Q 013928 354 ----ITALK--KYLIESSLASEAELKAIEKKIDEV---VEDAVEFADESAPPPRSQLLENVFAD-PK-GFGIGPDGR--- 419 (434)
Q Consensus 354 ----l~~~~--~~L~~~G~~te~e~~~i~~e~~~~---v~~a~~~A~~~p~p~~~~l~~~vya~-~~-~~~~~~~~~--- 419 (434)
-..+. +...+.|.-.+++|++.-+.+++. ..+.++.......|..-+.+-..|.. +. -+++..+|+
T Consensus 286 F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~~ATR~as~~~L~ 365 (663)
T COG0021 286 FEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGELPANWAAFLPKFEANGKSIATRKASGKALN 365 (663)
T ss_pred eecCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhChHHHHHHHHHhcccCchhHHHhhhhhcccccccchHHHHHHHHH
Confidence 12221 122334433345555444444432 22223333333333221111111211 12 246666666
Q ss_pred -ccccCCCcccccCCC
Q 013928 420 -YRCEDPKFTEGTAHV 434 (434)
Q Consensus 420 -~~~~~~~~~~~~~~~ 434 (434)
+....|.+++|+|||
T Consensus 366 ~l~~~~p~l~GGSADL 381 (663)
T COG0021 366 ALAKKLPELIGGSADL 381 (663)
T ss_pred HHHhhCccccccCccc
Confidence 889999999999996
No 22
>PRK12753 transketolase; Reviewed
Probab=99.92 E-value=4.9e-24 Score=232.60 Aligned_cols=143 Identities=22% Similarity=0.254 Sum_probs=124.4
Q ss_pred CcccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928 188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL 263 (434)
Q Consensus 188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~ 263 (434)
.++...+|++|+|++.|+|+|+|.|+++..++... .+.+|+|++|||++++|.+||++++|+.|+|| +|+||+||+
T Consensus 107 pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~ 186 (663)
T PRK12753 107 PGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNG 186 (663)
T ss_pred CCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCC
Confidence 46677899999999999999999998864332211 26799999999999999999999999999998 899999999
Q ss_pred ccCcccccccccCchhhhccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 334 (434)
Q Consensus 264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~~-VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~ 334 (434)
|+++++..... ..++.+++++|||+++. |||+|+.++++++++|.+ ..++|++|+++|++++|++..
T Consensus 187 ~~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~---~~~~P~~I~~~T~kG~G~~~~ 254 (663)
T PRK12753 187 ISIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQS---VKDKPSLIICRTIIGFGSPNK 254 (663)
T ss_pred CcCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHH---CCCCeEEEEEEEeecCCCCcc
Confidence 99999887654 57899999999999995 999999999998887653 357899999999999999865
No 23
>PLN02790 transketolase
Probab=99.92 E-value=1.5e-23 Score=228.74 Aligned_cols=143 Identities=25% Similarity=0.299 Sum_probs=121.9
Q ss_pred CcccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928 188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL 263 (434)
Q Consensus 188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~ 263 (434)
.++...+|++|++++.|+|+|+|.|+++.+++..+ .+.+|+|++|||++++|.+||++|+|+.|+|| +|+||+||+
T Consensus 98 pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~ 177 (654)
T PLN02790 98 PGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNH 177 (654)
T ss_pred CCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 36778899999999999999999997643222111 36789999999999999999999999999998 899999999
Q ss_pred ccCcccccccccCchhhhccccCCCcEEEEeC--CCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG--MDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 334 (434)
Q Consensus 264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG--~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~ 334 (434)
|+|+++...+. ..++.+++++|||+++.||| +|+.++++++++|.+ ..++|++|+++|++++|.+..
T Consensus 178 ~~i~~~~~~~~-~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~---~~~~P~lI~~~T~kG~G~~~~ 246 (654)
T PLN02790 178 ISIDGDTEIAF-TEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKA---VTDKPTLIKVTTTIGYGSPNK 246 (654)
T ss_pred ccccCCccccc-chhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHh---cCCCeEEEEEEEeecCCCccc
Confidence 99999887544 56889999999999999988 899999887766542 167999999999999998854
No 24
>PTZ00089 transketolase; Provisional
Probab=99.92 E-value=2.4e-23 Score=227.36 Aligned_cols=223 Identities=19% Similarity=0.164 Sum_probs=160.0
Q ss_pred ccccCCCChHHHHHHHH-HhcC---------CCCEE-Ec-cCcc---hHHHHHcCC--CHHHHHHHHhcCCCCCccCCCC
Q 013928 117 GFVHLYNGQEAVSTGFI-KLLK---------KEDSV-VS-TYRD---HVHALSKGV--PARAVMSELFGKATGCCRGQGG 179 (434)
Q Consensus 117 G~~h~~~GqEa~~~g~~-~~L~---------~~D~v-~~-~yR~---~~~~La~G~--~~~~i~~el~g~~~g~~~G~gg 179 (434)
|+...+.|---+.+++- ..|+ +.|.+ ++ .|.. +++....|. +.+++ ..+.+. .+..
T Consensus 27 GH~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l~l~G~~~~~~~l-~~fr~~-~s~~----- 99 (661)
T PTZ00089 27 GHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSMLHLTGYDLSMEDL-KNFRQL-GSRT----- 99 (661)
T ss_pred CCcchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCHHHH-HhcCCC-CCCC-----
Confidence 55555666655555554 3554 34764 44 4555 334445674 44443 333321 1111
Q ss_pred Cccccc-CCCcccCCcccccccchhhHHHHHHHHHHHhhhhhc---CCCceEEEEeCccccccchHHHHHHHHHHcCCC-
Q 013928 180 SMHMFS-KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP- 254 (434)
Q Consensus 180 s~h~~~-~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~---~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP- 254 (434)
+.|.-. ...++...+|++|++++.|+|+|+|.|+++.+++.. ..+.+|||++|||++++|.+||++++|+.++||
T Consensus 100 ~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~n 179 (661)
T PTZ00089 100 PGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEK 179 (661)
T ss_pred CCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCC
Confidence 112111 123455678999999999999999999876433321 126789999999999999999999999999998
Q ss_pred eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEE-eCC-CHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCC
Q 013928 255 IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGM-DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 332 (434)
Q Consensus 255 vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~-D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs 332 (434)
+|+||+||+|+++.+.... ...++.+++++|||+++.| ||+ |+.++++++++|.+. .++|++|+++|+|++||.
T Consensus 180 Li~i~d~N~~~i~~~~~~~-~~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~ 255 (661)
T PTZ00089 180 LIVLYDDNKITIDGNTDLS-FTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSS 255 (661)
T ss_pred EEEEEECCCcccccCcccc-cCccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCC
Confidence 8999999999999988654 3578899999999999999 999 999999988776532 268999999999999987
Q ss_pred CCCCCC----CCCHHHHHHHhc
Q 013928 333 LADPDE----LRDPAEKARYAA 350 (434)
Q Consensus 333 ~~D~~~----yR~~~e~~~~~~ 350 (434)
+.++.. +.+.++++.+.+
T Consensus 256 ~e~~~~~H~~~~~~~~~~~~~~ 277 (661)
T PTZ00089 256 KAGTEKVHGAPLGDEDIAQVKE 277 (661)
T ss_pred cCCCCCccCCCCCHHHHHHHHH
Confidence 666543 456677766543
No 25
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.90 E-value=1.1e-22 Score=198.48 Aligned_cols=137 Identities=26% Similarity=0.360 Sum_probs=121.8
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCc
Q 013928 189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIG 267 (434)
Q Consensus 189 ~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is 267 (434)
++...+|+||+++|+|+|+|+|.++. +++++|||++|||++++|.+||+|++|+.++|| +++|++||+|+++
T Consensus 99 g~~~~~GslG~gl~~avG~Ala~~~~-------~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~ 171 (255)
T cd02012 99 GVEVTTGSLGQGLSVAVGMALAEKLL-------GFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQID 171 (255)
T ss_pred CeeeCCcchhhHHHHHHHHHHHHHHh-------CCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCcccc
Confidence 56667899999999999999998876 578999999999999999999999999999998 8999999999998
Q ss_pred ccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCC
Q 013928 268 MSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 335 (434)
Q Consensus 268 ~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D 335 (434)
..........++.+++++|||++++|||+|+.++.+++++|.+. .++|++|+++|.++.||+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~---~~~P~~I~~~t~kg~g~~~~e 236 (255)
T cd02012 172 GPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS---KGKPTLIIAKTIKGKGVPFME 236 (255)
T ss_pred CcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc---CCCCEEEEEEeecccccCccC
Confidence 77655556788999999999999999999999999988776532 278999999999999999654
No 26
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.89 E-value=2.7e-22 Score=188.47 Aligned_cols=124 Identities=24% Similarity=0.289 Sum_probs=109.3
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccc
Q 013928 190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS 269 (434)
Q Consensus 190 ~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~ 269 (434)
+...+|++|+++|+|+|+|+|.|++ +.+++|||++|||++++|.+||+|++|+.+++|+++||+||+|+++++
T Consensus 70 ~~~~~G~lG~gl~~A~G~Ala~k~~-------~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~ 142 (195)
T cd02007 70 DAFGTGHSSTSISAALGMAVARDLK-------GKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPN 142 (195)
T ss_pred ceECCCchhhhHHHHHHHHHHHHHh-------CCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCC
Confidence 3457899999999999999999877 457899999999999999999999999999999999999999998876
Q ss_pred ccccccCchhhhccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 013928 270 HLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330 (434)
Q Consensus 270 ~~~~~~~~d~~~~a~a~Gi~~~~-VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~g 330 (434)
+. +..++++++||.+.. |||+|++++.+++++| ++.++|++|+++|++++|
T Consensus 143 ~~------~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a----~~~~~P~~I~~~T~kg~g 194 (195)
T cd02007 143 VG------TPGNLFEELGFRYIGPVDGHNIEALIKVLKEV----KDLKGPVLLHVVTKKGKG 194 (195)
T ss_pred CC------CHHHHHHhcCCCccceECCCCHHHHHHHHHHH----HhCCCCEEEEEEEecccC
Confidence 54 466778899999885 9999999998876654 456799999999999887
No 27
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.89 E-value=7.6e-22 Score=198.96 Aligned_cols=145 Identities=24% Similarity=0.344 Sum_probs=116.1
Q ss_pred CcccCCcccccccchhhHHHHHHHHHHHhhhhhc---CCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928 188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL 263 (434)
Q Consensus 188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~---~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~ 263 (434)
.++...+|+||+|++.|+|+|+|.|+.+.+++.+ ..++.|+|++|||++++|++||++.+|+.++|+ +|+||++|+
T Consensus 104 ~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~ 183 (332)
T PF00456_consen 104 PGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNG 183 (332)
T ss_dssp TT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEES
T ss_pred ceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCC
Confidence 4666779999999999999999999887655432 246789999999999999999999999999999 999999999
Q ss_pred ccCcccccccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCC
Q 013928 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP 336 (434)
Q Consensus 264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~ 336 (434)
..+...+.... ..++.+++++|||.+++| ||+|+.++++|+.+|.. ..++|++|.++|.+++|.+....
T Consensus 184 ~q~dg~~~~~~-~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~---~~~kP~~Ii~~TvkG~G~~~~e~ 253 (332)
T PF00456_consen 184 IQIDGPTDIVF-SEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKA---SKGKPTVIIARTVKGKGVPFMEG 253 (332)
T ss_dssp EETTEEGGGTH-HSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHH---STSS-EEEEEEE-TTTTSTTTTT
T ss_pred cccCCCccccc-chHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHh---cCCCCceeecceEEecCchhhcc
Confidence 89988775433 468899999999999998 99999999987776532 33799999999999999976543
No 28
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.88 E-value=3.6e-21 Score=180.16 Aligned_cols=216 Identities=21% Similarity=0.242 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHH-HHHHHHhcC--C-------CCEEEccCcchH---HH--HH
Q 013928 90 LELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAV-STGFIKLLK--K-------EDSVVSTYRDHV---HA--LS 154 (434)
Q Consensus 90 l~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~-~~g~~~~L~--~-------~D~v~~~yR~~~---~~--La 154 (434)
.++-+....+|.---++ ++..| .|+++.+...--+ ++.....|+ | .|+++.+ .||+ .+ |+
T Consensus 8 ~~L~~~A~~iRr~~v~m--~~~~~--~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLS-KGHaa~AlYa~La 82 (243)
T COG3959 8 DELERIAREIRRNIVRM--LANAG--SGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILS-KGHAAPALYATLA 82 (243)
T ss_pred HHHHHHHHHHHHHHHHH--hcccC--CCCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEe-cccchHHHHHHHH
Confidence 34444445566554332 23333 3666666666444 333444432 3 5666664 3444 22 33
Q ss_pred -cCCCHHHHHHHHhcCCCCCccCCCCCccccc-CCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeC
Q 013928 155 -KGVPARAVMSELFGKATGCCRGQGGSMHMFS-KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFG 232 (434)
Q Consensus 155 -~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~-~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~G 232 (434)
+|+-+++-+..+. +..+. -+.|.-. ...++..++|+||+|+++|+|+|++.|++ +.+..|++++|
T Consensus 83 e~G~~p~eeL~~~~-~~~sr-----L~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~-------~~~~~VyvilG 149 (243)
T COG3959 83 EKGYFPEEELETFR-RIGSR-----LPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLK-------GSPYRVYVILG 149 (243)
T ss_pred HcCCCCHHHHHHhc-cCCCc-----CCCCCccCCCCceeecCCcccccchHHHHHHHHHhhc-------CCCceEEEEec
Confidence 7876666665433 22211 1233221 33467778999999999999999999988 56789999999
Q ss_pred ccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHH
Q 013928 233 DGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIER 311 (434)
Q Consensus 233 DGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ 311 (434)
||.+++|++||++.+|++|+|. +|.||+-|...++..+.+..+..++.+++++|||.+++|||+|++++.+++..
T Consensus 150 DGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~---- 225 (243)
T COG3959 150 DGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEK---- 225 (243)
T ss_pred CcccccccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHh----
Confidence 9999999999999999999999 88888877778888887777788999999999999999999999999886554
Q ss_pred HHc-cCCCEEEEEEEec
Q 013928 312 ARR-GEGPTLVECETYR 327 (434)
Q Consensus 312 ar~-~~gP~lIev~t~R 327 (434)
++. .++|++|.++|.+
T Consensus 226 ~~~~~~rP~~IIa~Tvk 242 (243)
T COG3959 226 AKGSKGRPTVIIAKTVK 242 (243)
T ss_pred hhccCCCCeEEEEeccc
Confidence 444 3499999999865
No 29
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.88 E-value=6.9e-22 Score=214.43 Aligned_cols=234 Identities=21% Similarity=0.219 Sum_probs=164.9
Q ss_pred HhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--cCcch
Q 013928 73 EKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYRDH 149 (434)
Q Consensus 73 ~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~-~~D~v~~--~yR~~ 149 (434)
++|+.+..-..++.++|.++-.. +|.+.++. .. .+ .|+...+.|---+.+++...++ +.|.++. .|...
T Consensus 2 ~~i~~p~dl~~l~~~~l~~la~~-iR~~~i~~--~~--~~---~GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y 73 (617)
T TIGR00204 2 SLINSPQELRLLSIDELEKLCDE-LRRYLLES--VS--AS---GGHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAY 73 (617)
T ss_pred CCCCCHHHHhhCCHHHHHHHHHH-HHHHHHHH--Hh--cc---CCCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHH
Confidence 45666666667777777666533 33343432 11 12 3666667887666677777777 5776655 57777
Q ss_pred HHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCccc-CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEE
Q 013928 150 VHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLL-GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTL 228 (434)
Q Consensus 150 ~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~-~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv 228 (434)
++.+..|. . +-|..+.... |.+ .|....+..+. ...|++|+++++|+|+|+|.|++ +.+.+|+
T Consensus 74 ~~~~~~G~-~-~~l~~~r~~g-----~l~--g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~-------~~~~~v~ 137 (617)
T TIGR00204 74 PHKLLTGR-R-EKFSTLRQKK-----GLH--GFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKK-------GADRKTV 137 (617)
T ss_pred HHHHHhCc-H-HHhcchhhcC-----CcC--CCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhh-------CCCCEEE
Confidence 77777886 2 2233322211 111 12211112222 36788999999999999999987 5688999
Q ss_pred EEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccccc------------------------Cc---h-hh
Q 013928 229 AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS------------------------DP---Q-IY 280 (434)
Q Consensus 229 ~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~------------------------~~---d-~~ 280 (434)
|++|||++++|.+||+||+|+.++||+|+||+||+|+++++...+.. .+ + +.
T Consensus 138 ~~~GDG~~~eG~~~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 217 (617)
T TIGR00204 138 CVIGDGAITAGMAFEALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLA 217 (617)
T ss_pred EEECCcccccccHHHHHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHH
Confidence 99999999999999999999999999999999999999987642210 00 1 32
Q ss_pred hc--------------cccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928 281 KK--------------GPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 334 (434)
Q Consensus 281 ~~--------------a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~ 334 (434)
++ +++|||.++ .|||+|+.++.++++ .++..++|++|+++|.|++|.+..
T Consensus 218 ~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~al~----~ak~~~~P~~i~~~T~KGkG~~~~ 282 (617)
T TIGR00204 218 KRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIETLK----NAKKLKGPVFLHIQTKKGKGYKPA 282 (617)
T ss_pred HHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHHHHH----HHhcCCCCEEEEEEecCCCCCchh
Confidence 33 889999999 899999999998665 455667899999999999997765
No 30
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.88 E-value=1.1e-21 Score=211.85 Aligned_cols=237 Identities=19% Similarity=0.167 Sum_probs=165.1
Q ss_pred HHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--cCc
Q 013928 71 VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYR 147 (434)
Q Consensus 71 ~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~-~~D~v~~--~yR 147 (434)
+.++|+.+..-.+++.++|.++-.. +|.+.++. .. .+ .|+...+.|.=-+.+++-..++ +.|.++- .|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~~a~~-iR~~~~~~--~~---~~--~gH~g~~ls~~~i~~~L~~~~~~~rDr~ils~GH~ 77 (580)
T PRK05444 6 LLDTINSPADLKKLSEEELPQLADE-IREFLIDV--VS---KT--GGHLGSNLGVVELTVALHYVFDTPKDRIIWDVGHQ 77 (580)
T ss_pred hhhccCCHHHHhcCCHHHHHHHHHH-HHHHHHHH--HH---hc--CCCcCCCccHHHHHHHHHHhcCCCCccEEEeccHH
Confidence 4677888777777888776655333 33333332 22 21 3565556776555555555554 4565544 455
Q ss_pred chHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccC-CCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928 148 DHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSK-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 226 (434)
Q Consensus 148 ~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~-~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~ 226 (434)
+.++....|. .++ +..+... .+ . +.|.... ..++...+|++|+++|+|+|+|+|.|+++ +++++
T Consensus 78 ~y~~~~~~g~-~~~-l~~~~~~-~s----~--~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~------~~~~~ 142 (580)
T PRK05444 78 AYPHKILTGR-RDR-FDTLRQK-GG----L--SGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKG------GEDRK 142 (580)
T ss_pred HHHHHHHhCc-HHH-hcCcccC-CC----C--CCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhC------CCCCe
Confidence 5445555665 222 2222111 11 1 1232211 13556678999999999999999988762 36789
Q ss_pred EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccc---ccCchhhhccccCCCcEE-EEeCCCHHHHH
Q 013928 227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA---TSDPQIYKKGPAFGMPGF-HVDGMDVLKVR 302 (434)
Q Consensus 227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~---~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~ 302 (434)
|+|++|||++++|.+||+|++|+.+++|+++|++||+|+++.+.... ....++.+++++|||+++ .|||+|+.+++
T Consensus 143 v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~ 222 (580)
T PRK05444 143 VVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALI 222 (580)
T ss_pred EEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHH
Confidence 99999999999999999999999999999999999999988776433 123456688999999999 59999999998
Q ss_pred HHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928 303 EVAKEAIERARRGEGPTLVECETYRFRGHSLA 334 (434)
Q Consensus 303 ~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~ 334 (434)
+++++ ++..++|++|+++|.|++|.+..
T Consensus 223 ~al~~----a~~~~~P~lI~~~T~kg~G~~~~ 250 (580)
T PRK05444 223 ETLKN----AKDLKGPVLLHVVTKKGKGYAPA 250 (580)
T ss_pred HHHHH----HHhCCCCEEEEEEecCCcCCChh
Confidence 86664 44567999999999999998754
No 31
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.88 E-value=6.3e-21 Score=193.66 Aligned_cols=209 Identities=20% Similarity=0.179 Sum_probs=151.0
Q ss_pred ccccCCCChHHHHHHH-HHhcCC------CCEEEccCcchHH------HHHcCC-CHHHHHHHHhcCCCCCccCCCCCcc
Q 013928 117 GFVHLYNGQEAVSTGF-IKLLKK------EDSVVSTYRDHVH------ALSKGV-PARAVMSELFGKATGCCRGQGGSMH 182 (434)
Q Consensus 117 G~~h~~~GqEa~~~g~-~~~L~~------~D~v~~~yR~~~~------~La~G~-~~~~i~~el~g~~~g~~~G~ggs~h 182 (434)
|+...+.+.--+.+++ ...|+. .|.|++ .+|+. ....|. +.++ +..+...... .+-.+..+
T Consensus 31 GH~G~slS~adI~~aLy~~~l~~~p~~~~RDRvlS--kGHas~~lYA~L~l~G~~~~ed-L~~fr~~gs~--p~l~g~p~ 105 (386)
T cd02017 31 GHIATFASAATLYEVGFNHFFRARGEGGGGDLVYF--QGHASPGIYARAFLEGRLTEEQ-LDNFRQEVGG--GGLSSYPH 105 (386)
T ss_pred CCCCcchhHHHHHHHHHHHhcCCCCCCCCCCEEEe--CCcccHHHHHHHHHcCCCCHHH-HHhhccCCCC--CCCCCCCC
Confidence 5544455554444444 456775 788665 45554 223674 4444 4444432110 01111111
Q ss_pred cccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEc
Q 013928 183 MFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVEN 261 (434)
Q Consensus 183 ~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~N 261 (434)
......++...+|++|+|+++|+|+|+|.|+...+++..+.+..|+|++|||++++|++||++++|+.++|+ +|+||++
T Consensus 106 ~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~ 185 (386)
T cd02017 106 PWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNC 185 (386)
T ss_pred CCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 111122466788999999999999999999865544434567899999999999999999999999999997 9999999
Q ss_pred CCccCccccccc-ccCchhhhccccCCCcEEEEe----------------------------------------------
Q 013928 262 NLWAIGMSHLRA-TSDPQIYKKGPAFGMPGFHVD---------------------------------------------- 294 (434)
Q Consensus 262 N~y~is~~~~~~-~~~~d~~~~a~a~Gi~~~~Vd---------------------------------------------- 294 (434)
|++++..++... ....++.+++++|||.++.||
T Consensus 186 N~~qidG~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~ 265 (386)
T cd02017 186 NLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFG 265 (386)
T ss_pred CCCccCCcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhcc
Confidence 999998887664 356789999999999999998
Q ss_pred -----------------------CCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCC
Q 013928 295 -----------------------GMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL 333 (434)
Q Consensus 295 -----------------------G~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~ 333 (434)
|+|+.++.+|+.++.+ ..++|++|.++|.+++|.+.
T Consensus 266 ~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~---~~~kPt~Iia~TikG~G~~~ 324 (386)
T cd02017 266 KYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVE---HKGKPTVILAKTIKGYGLGA 324 (386)
T ss_pred ccHHHHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHh---CCCCCeEEEEeCeecCCCCh
Confidence 9999999987765432 24689999999999999873
No 32
>PRK05899 transketolase; Reviewed
Probab=99.88 E-value=5.3e-21 Score=208.24 Aligned_cols=155 Identities=24% Similarity=0.300 Sum_probs=126.6
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhhhhhc---CCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCc
Q 013928 189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW 264 (434)
Q Consensus 189 ~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~---~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y 264 (434)
++...+|+||+++|+|+|+|+|.++++.+++.. ..+++|||++|||++++|.+||+|++|+.++|| +++|++||+|
T Consensus 112 ~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~ 191 (624)
T PRK05899 112 GVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRI 191 (624)
T ss_pred CeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence 455568999999999999999988775322211 127899999999999999999999999999999 8999999999
Q ss_pred cCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCC-CCCCC--
Q 013928 265 AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP-DELRD-- 341 (434)
Q Consensus 265 ~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~-~~yR~-- 341 (434)
+++.+... ...+++.+++++|||++++|||+|+.++.+++++|. ..++|++|++.|+|++||+..++ ..|+.
T Consensus 192 ~~~~~~~~-~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~----~~~~P~vI~v~t~kg~g~~~~e~~~~~H~~~ 266 (624)
T PRK05899 192 SIDGPTEG-WFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAK----ASTKPTLIIAKTIIGKGAPNKEGTHKVHGAP 266 (624)
T ss_pred cccccccc-cccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHH----hcCCCEEEEEEeEeccCCccccCCCcccCCC
Confidence 99877653 335789999999999999999999999999777665 34689999999999999986654 34543
Q ss_pred --HHHHHHH
Q 013928 342 --PAEKARY 348 (434)
Q Consensus 342 --~~e~~~~ 348 (434)
+++++.+
T Consensus 267 ~~~~~~~~~ 275 (624)
T PRK05899 267 LGAEEIAAA 275 (624)
T ss_pred CCHHHHHHH
Confidence 3455444
No 33
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.87 E-value=6.1e-22 Score=188.73 Aligned_cols=186 Identities=15% Similarity=0.155 Sum_probs=150.9
Q ss_pred CCChHHHHHHHHHhcCC-CCEEEccCcchHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCccccccc
Q 013928 122 YNGQEAVSTGFIKLLKK-EDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEG 200 (434)
Q Consensus 122 ~~GqEa~~~g~~~~L~~-~D~v~~~yR~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~g 200 (434)
+.||++.++.+...|.. .|++|+.||.+..- ++++|+++. .+.| .++|......++...+|+||++
T Consensus 1 g~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~g------l~~lf~qfs-----~~gg--~psH~~~~tpGi~~~~G~LG~g 67 (227)
T cd02011 1 GPGHGGPAVLANLYLEGSYSEFYPEISQDEEG------MRKLFKQFS-----FPGG--IPSHAAPETPGSIHEGGELGYS 67 (227)
T ss_pred CCChHHHHHHHHHHhcCCCccccccccccHHH------HHHHHHhcC-----CCCC--CCCCCcccCCCeeecccchhhH
Confidence 36999999888888887 59999999976522 266778762 1112 4678777777888999999999
Q ss_pred chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchH---HHHHHHHHHcCCC-eEEEEEcCCccCccccccc-cc
Q 013928 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF---FECLNMAALWKLP-IVFVVENNLWAIGMSHLRA-TS 275 (434)
Q Consensus 201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~---~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~-~~ 275 (434)
++.|+|+|+. +++.+|+|++|||++++|.+ |++..++..+++. |+.|++||+|+|++++... .+
T Consensus 68 Ls~A~G~a~d-----------~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~ 136 (227)
T cd02011 68 LSHAYGAVFD-----------NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARIS 136 (227)
T ss_pred HHHHHHhhhc-----------CCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccC
Confidence 9999999865 68899999999999999996 8888888888888 8889999999999998865 44
Q ss_pred CchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHc-----------c---CCC--EEEEEEEecCCCC
Q 013928 276 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR-----------G---EGP--TLVECETYRFRGH 331 (434)
Q Consensus 276 ~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~-----------~---~gP--~lIev~t~R~~gH 331 (434)
..++.+++++|||+++.|||+|++++++++++|+++++. . .+| =+|.++|.+++.-
T Consensus 137 ~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~wp~~~~~~~kg~~~ 208 (227)
T cd02011 137 HEELEALFRGYGYEPYFVEGDDPETMHQAMAATLDWAIEEIKAIQKRAREGGDASRPRWPMIVLRTPKGWTG 208 (227)
T ss_pred chhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCEEEEeCCCCCCC
Confidence 678999999999999999999999999999988886542 1 123 1566778777643
No 34
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.87 E-value=4e-20 Score=204.19 Aligned_cols=242 Identities=17% Similarity=0.149 Sum_probs=167.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCCh-HHHHHHHHHhcCC------CCEEEccCcchHHHH----
Q 013928 85 TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQ-EAVSTGFIKLLKK------EDSVVSTYRDHVHAL---- 153 (434)
Q Consensus 85 s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~Gq-Ea~~~g~~~~L~~------~D~v~~~yR~~~~~L---- 153 (434)
.+.++.+-....++...++.-.......+++.|+..++.+- +.+.+.....|+. +|+|++. ||+..+
T Consensus 70 gd~~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a~i~~vLy~~~lr~~~~~~~rD~Vlsk--GHasp~lYA~ 147 (889)
T TIGR03186 70 GDLQLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAAGDASGGDLVYFQ--PHSAPGVYAR 147 (889)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHHHHHHHHHHHhCCCCCCCCCCCEEEEC--CchHHHHHHH
Confidence 34455555566666555554322222234555665444443 2334455566764 6887764 455432
Q ss_pred --HcCC-CHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEE
Q 013928 154 --SKGV-PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAF 230 (434)
Q Consensus 154 --a~G~-~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~ 230 (434)
..|. +.++ +..+.....+ .|-.+..|....+-.+...+|+||.|++.|+|+|++.||...++.....+..|+|+
T Consensus 148 l~l~G~l~~e~-L~~fRq~~~~--~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~l 224 (889)
T TIGR03186 148 AFLEGFLSDAQ-LAHYRQEIAG--PGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGF 224 (889)
T ss_pred HHHcCCCCHHH-HHHhcCCCCC--CCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEE
Confidence 2674 5544 4455543221 12223334322112345578999999999999999999876432223457889999
Q ss_pred eCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCccccccccc-CchhhhccccCCCcEEEE---------------
Q 013928 231 FGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHV--------------- 293 (434)
Q Consensus 231 ~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~~~-~~d~~~~a~a~Gi~~~~V--------------- 293 (434)
+|||++++|++||++.+|++++|+ +|+||++|...+..++..... ..++.+++++|||.+++|
T Consensus 225 lGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~ 304 (889)
T TIGR03186 225 FGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDAT 304 (889)
T ss_pred EcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccc
Confidence 999999999999999999999998 999999999899888765333 468999999999999999
Q ss_pred ------------------------------------------------------eCCCHHHHHHHHHHHHHHHHccCCCE
Q 013928 294 ------------------------------------------------------DGMDVLKVREVAKEAIERARRGEGPT 319 (434)
Q Consensus 294 ------------------------------------------------------dG~D~~av~~a~~~Al~~ar~~~gP~ 319 (434)
+|+|+.+|++|+++|.+ ..++|+
T Consensus 305 ~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~---~~~~PT 381 (889)
T TIGR03186 305 GALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVR---HEGRPT 381 (889)
T ss_pred hHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh---CCCCCE
Confidence 59999999998887763 236899
Q ss_pred EEEEEEecCCCCCCC
Q 013928 320 LVECETYRFRGHSLA 334 (434)
Q Consensus 320 lIev~t~R~~gHs~~ 334 (434)
+|.++|.+++|.+..
T Consensus 382 vIla~TvkG~G~~~~ 396 (889)
T TIGR03186 382 VILAKTMKGFGMGAI 396 (889)
T ss_pred EEEEEeeecCCCCcc
Confidence 999999999997554
No 35
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.85 E-value=4.4e-20 Score=201.11 Aligned_cols=237 Identities=20% Similarity=0.203 Sum_probs=163.0
Q ss_pred HHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--cCc
Q 013928 71 VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYR 147 (434)
Q Consensus 71 ~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~-~~D~v~~--~yR 147 (434)
++++|+.+..-..++.++|.++-.. +|.+.+|. .. ..| |+...+.|---+.+++...++ |.|.++. .|.
T Consensus 8 ~l~~i~~p~dl~~l~~~~l~~~a~~-iR~~ii~~--~~--~~~---GH~g~~ls~vel~~aL~~~~~~prDr~i~s~GH~ 79 (641)
T PRK12571 8 LLDRIKGPADLRALSDAELEQLADE-LRAEVISA--VS--ETG---GHLGSSLGVVELTVALHAVFNTPKDKLVWDVGHQ 79 (641)
T ss_pred hhhhcCCHHHHHhCCHHHHHHHHHH-HHHHHHHH--HH--HhC---CCcCCCchHHHHHHHHHHhcCCCCCcEEEECchH
Confidence 5889998888888888887766433 33343432 22 222 666667887666666766665 5676554 577
Q ss_pred chHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCC-cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928 148 DHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEH-NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 226 (434)
Q Consensus 148 ~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~-~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~ 226 (434)
..++.+..|. .+-|..+..... .+| |....+. .-....++-+.+++.|+|+|+|.++. ++++.
T Consensus 80 ~Y~~~~l~g~--~~~l~~~r~~~~-----l~g--~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~-------~~~~~ 143 (641)
T PRK12571 80 CYPHKILTGR--RDRFRTLRQKGG-----LSG--FTKRSESEYDPFGAAHSSTSISAALGFAKARALG-------QPDGD 143 (641)
T ss_pred HHHHHHHhCC--HHHHhhhhhCCC-----cCC--CCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHh-------CCCCe
Confidence 7777777775 233333332211 111 1111110 10011233355678888888888776 56889
Q ss_pred EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccc-------ccccCchh--------------------
Q 013928 227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL-------RATSDPQI-------------------- 279 (434)
Q Consensus 227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~-------~~~~~~d~-------------------- 279 (434)
|+|++|||++++|.+||++++|+.+++|+++|++||+|+++.+.. .......+
T Consensus 144 v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (641)
T PRK12571 144 VVAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRD 223 (641)
T ss_pred EEEEEeCchhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHH
Confidence 999999999999999999999999999999999999999988763 11111111
Q ss_pred ---------------hhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHc-cCCCEEEEEEEecCCCCCCCC
Q 013928 280 ---------------YKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSLAD 335 (434)
Q Consensus 280 ---------------~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~-~~gP~lIev~t~R~~gHs~~D 335 (434)
.+++++|||.++ .|||||+.++.++++.+ +. .++|++|+++|.+++|.+.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~a----k~~~~~P~~I~~~T~kGkG~~~~e 292 (641)
T PRK12571 224 GARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAA----RARADGPVLVHVVTEKGRGYAPAE 292 (641)
T ss_pred HHHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHH----HhCCCCCEEEEEEecCccCcchhh
Confidence 378899999999 79999999998866654 33 478999999999999987553
No 36
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.85 E-value=2e-19 Score=196.90 Aligned_cols=241 Identities=18% Similarity=0.106 Sum_probs=166.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCCh-HHHHHHHHHhcCC------CCEEEccCcchHHHH----
Q 013928 85 TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQ-EAVSTGFIKLLKK------EDSVVSTYRDHVHAL---- 153 (434)
Q Consensus 85 s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~Gq-Ea~~~g~~~~L~~------~D~v~~~yR~~~~~L---- 153 (434)
.+.++.+.....++-..++.-...-....++.|+..++.+. +...+.....|+. .|.|++ .||+...
T Consensus 70 gd~~~e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~adIl~vLy~~~lr~~~~~~~rD~VlS--KGHasp~lYA~ 147 (885)
T TIGR00759 70 GDLELERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASAATLYEVGFNHFFRGHSEGGGGDLVFF--QGHAAPGIYAR 147 (885)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHHHHHHHHHHHHhcCCCCCCCCCCEEEE--CCcHHHHHHHH
Confidence 34455555555555554443221211123445554444443 2334445566764 688776 5666432
Q ss_pred --HcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEe
Q 013928 154 --SKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFF 231 (434)
Q Consensus 154 --a~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~ 231 (434)
..|.-.++-+..+..... ..|-++..|....+-.+.-.+|+||.|++.|+|+|++.|+...++.....+++|+|++
T Consensus 148 L~l~G~ls~e~L~~FRq~~~--g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvll 225 (885)
T TIGR00759 148 AFLEGRLTEEQLDNFRQEVQ--GDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFL 225 (885)
T ss_pred HHHcCCCCHHHHHHhcCCCC--CCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEE
Confidence 267534444555554322 1222332333221223455789999999999999999998765544445778999999
Q ss_pred CccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCccccccccc-CchhhhccccCCCcEEEE----------------
Q 013928 232 GDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHV---------------- 293 (434)
Q Consensus 232 GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~~~-~~d~~~~a~a~Gi~~~~V---------------- 293 (434)
|||++++|++||++.+|++++|+ +|+||++|.+.+..++..... ..++.++++++||.+++|
T Consensus 226 GDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g 305 (885)
T TIGR00759 226 GDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSG 305 (885)
T ss_pred cchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCcc
Confidence 99999999999999999999998 999999999899888765433 468999999999999999
Q ss_pred -----------------------------------------------------eCCCHHHHHHHHHHHHHHHHccCCCEE
Q 013928 294 -----------------------------------------------------DGMDVLKVREVAKEAIERARRGEGPTL 320 (434)
Q Consensus 294 -----------------------------------------------------dG~D~~av~~a~~~Al~~ar~~~gP~l 320 (434)
+|||+.+|++|+..|.+ ..++|++
T Consensus 306 ~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~---~~grPTv 382 (885)
T TIGR00759 306 VLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQE---HKGQPTV 382 (885)
T ss_pred HHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHh---CCCCCEE
Confidence 59999999998876653 2358999
Q ss_pred EEEEEecCCCCC
Q 013928 321 VECETYRFRGHS 332 (434)
Q Consensus 321 Iev~t~R~~gHs 332 (434)
|.++|.+++|.+
T Consensus 383 IlA~TvKG~G~~ 394 (885)
T TIGR00759 383 ILAKTIKGYGMG 394 (885)
T ss_pred EEEeeeecCCCC
Confidence 999999999987
No 37
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.84 E-value=9e-20 Score=198.45 Aligned_cols=236 Identities=16% Similarity=0.184 Sum_probs=164.3
Q ss_pred HHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--cCc
Q 013928 71 VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYR 147 (434)
Q Consensus 71 ~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~-~~D~v~~--~yR 147 (434)
++++|+.+.....++.+++.++-.. +|-+.++. .. .. .|++.++.|---+.+++...|+ +.|.++. .|.
T Consensus 33 ~l~~i~~p~dlk~l~~~~l~~la~~-iR~~ii~~--~~--~~---~GH~g~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~ 104 (677)
T PLN02582 33 LLDTINYPIHMKNLSVKELKQLADE-LRSDVIFN--VS--KT---GGHLGSSLGVVELTVALHYVFNAPQDKILWDVGHQ 104 (677)
T ss_pred hhhhCCCHHHHhhCCHHHHHHHHHH-HHHHHHHH--HH--hc---CCCcCccccHHHHHHHHHHhhCCCCCeEEEECcch
Confidence 5899999888888999998766544 23233332 21 22 2666667887666667766676 6888766 577
Q ss_pred chHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccC-CCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928 148 DHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSK-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 226 (434)
Q Consensus 148 ~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~-~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~ 226 (434)
..++.+..|.. ++ |..+.... | -+.|.... ..+..-+.|++|.++++|+|+|+|.+++ +.+.+
T Consensus 105 ay~~~~l~gr~-~~-l~~~r~~g-----~--l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~-------~~~~~ 168 (677)
T PLN02582 105 SYPHKILTGRR-DK-MHTMRQTN-----G--LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLK-------GKKNN 168 (677)
T ss_pred HHHHHHHHccH-HH-hcccccCC-----C--cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhc-------CCCCE
Confidence 77777777751 11 22222110 1 11222111 1233456899999999999999998877 56789
Q ss_pred EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc----------ccc-------ccC-------------
Q 013928 227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH----------LRA-------TSD------------- 276 (434)
Q Consensus 227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~----------~~~-------~~~------------- 276 (434)
|||++|||++++|.+||+||.|+.+++|+|+||+||+. +|.|. ... ..+
T Consensus 169 v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~-~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~ 247 (677)
T PLN02582 169 VVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQ-VSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGV 247 (677)
T ss_pred EEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCCC-ccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999984 22211 000 000
Q ss_pred --------chhh----------------hccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHcc--CCCEEEEEEEecCC
Q 013928 277 --------PQIY----------------KKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRG--EGPTLVECETYRFR 329 (434)
Q Consensus 277 --------~d~~----------------~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~--~gP~lIev~t~R~~ 329 (434)
..+. .++++|||.++ .|||||+.++.++++.+ +.. ++|++|+++|.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~----k~~~~~~P~vihv~T~KGk 323 (677)
T PLN02582 248 TKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREV----KSTKTTGPVLIHVVTEKGR 323 (677)
T ss_pred HHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHH----HhcCCCCCEEEEEEecCCC
Confidence 0111 24788999977 99999999998866654 333 59999999999999
Q ss_pred CCCCCC
Q 013928 330 GHSLAD 335 (434)
Q Consensus 330 gHs~~D 335 (434)
|...++
T Consensus 324 G~~~ae 329 (677)
T PLN02582 324 GYPYAE 329 (677)
T ss_pred CCChhh
Confidence 998763
No 38
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.84 E-value=2.2e-19 Score=193.98 Aligned_cols=240 Identities=15% Similarity=0.143 Sum_probs=166.4
Q ss_pred HHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--cCc
Q 013928 71 VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYR 147 (434)
Q Consensus 71 ~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~-~~D~v~~--~yR 147 (434)
+++.|+.+.....++.++|.++-.. +|..= ..+.... .|++..+.|---+.+++...|+ |.|.++. .|.
T Consensus 66 ~l~~i~~p~~~k~l~~~~L~~la~e---iR~~i---i~~~~~~--~GHlgssLs~vEl~~aL~~vf~~p~DriI~s~GHq 137 (641)
T PLN02234 66 LLDTINHPMHMKNLSIKELKVLSDE---LRSDV---IFNVSKT--GGHLGSNLGVVELTVALHYIFNTPHDKILWDVGHQ 137 (641)
T ss_pred hhhhcCCHHHHhhCCHHHHHHHHHH---HHHHH---HHHHhhc--CCCccccchHHHHHHHHHHhcCCCCCeEEEecchh
Confidence 6888887776667788888766544 44321 1211111 3677678888777777877776 6787766 577
Q ss_pred chHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccC-CCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928 148 DHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSK-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 226 (434)
Q Consensus 148 ~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~-~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~ 226 (434)
..++.+..|..- -|..+... .|. +.|.-.. ..+..-+.|++|.++++|+|+|+|.+++ +.+..
T Consensus 138 aya~~~ltgr~~--~l~t~r~~-----ggl--~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~-------g~~~~ 201 (641)
T PLN02234 138 SYPHKILTGRRG--KMKTIRQT-----NGL--SGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLK-------GMNNS 201 (641)
T ss_pred HHHHHHHHhhhh--hhcccccC-----CCc--CCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhC-------CCCCe
Confidence 777776665421 12221111 011 1222111 1244556899999999999999998877 56788
Q ss_pred EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc------CcccccccccC---------------chhhhcccc
Q 013928 227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA------IGMSHLRATSD---------------PQIYKKGPA 285 (434)
Q Consensus 227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~------is~~~~~~~~~---------------~d~~~~a~a 285 (434)
|||++|||++++|++||+|+.|+..+-++|+|+++|+.. ...+....... .+..+++++
T Consensus 202 v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~ 281 (641)
T PLN02234 202 VVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEE 281 (641)
T ss_pred EEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHH
Confidence 999999999999999999999997787799999999863 22221110000 245688999
Q ss_pred CCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCC
Q 013928 286 FGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP 336 (434)
Q Consensus 286 ~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~ 336 (434)
|||.++ .|||||+.++.++++.+. .....+|++|+++|.+++|.+.++.
T Consensus 282 fG~~~~g~vDGHd~~~l~~al~~~k--~~~~~~P~vI~~~T~KGkGv~~~E~ 331 (641)
T PLN02234 282 LGFHYVGPVDGHNIDDLVSILETLK--STKTIGPVLIHVVTEKGRGYPYAER 331 (641)
T ss_pred cCCEEEeeECCCCHHHHHHHHHHHH--hcCCCCCEEEEEEEecCCCcchhhc
Confidence 999999 999999999999776542 1123589999999999999997754
No 39
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.83 E-value=1.8e-19 Score=178.69 Aligned_cols=233 Identities=17% Similarity=0.146 Sum_probs=171.0
Q ss_pred cCcchHHHHHcCCCHH-HHHHHHhcCCC------CCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhh
Q 013928 145 TYRDHVHALSKGVPAR-AVMSELFGKAT------GCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREV 217 (434)
Q Consensus 145 ~yR~~~~~La~G~~~~-~i~~el~g~~~------g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~ 217 (434)
-||||+.....|.++. +++.+.+++.+ ||..+.++.+|+... ++.....++|.++++|.|+++|.+.++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~~--~~~~i~~~~G~~~~~A~G~a~A~~~~~-- 89 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSPL--TVPVLHTAFAATAAVASGIEEALKARG-- 89 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCcccc--cccceeehhhChHHHHHHHHHHHHhhC--
Confidence 4899999999999888 88999988766 666666677766544 666778899999999999999987763
Q ss_pred hhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccc-----------------ccCchhh
Q 013928 218 LKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------------TSDPQIY 280 (434)
Q Consensus 218 ~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~-----------------~~~~d~~ 280 (434)
.++..|++++|||++..+.+ |+|+.|..+++|++|||.||+|...|-.+.. ....|+.
T Consensus 90 ----~~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~ 164 (300)
T PRK11864 90 ----EKGVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVP 164 (300)
T ss_pred ----CCCcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHH
Confidence 23455667999999987665 9999999999999999999998776543211 1235788
Q ss_pred hccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCC---------------CCCC----
Q 013928 281 KKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP---------------DELR---- 340 (434)
Q Consensus 281 ~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~---------------~~yR---- 340 (434)
.++.++|++++ +++-.|+.++.+++++|+ +.+||.+|++.+.-..++...+. +-||
T Consensus 165 ~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~----~~~Gps~I~~~spC~~~~~~~~~~~~~~~k~Av~tg~wplye~~~g 240 (300)
T PRK11864 165 DIMAAHKVPYVATASIAYPEDFIRKLKKAK----EIRGFKFIHLLAPCPPGWRFDPDKTIEIARLAVETGVWPLFEYENG 240 (300)
T ss_pred HHHHHcCCCEEEEEeCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCCCcChHHHHHHHHHHHHcCCceEEEEECC
Confidence 89999999877 888889999988877776 46899999997654444321110 0121
Q ss_pred -------CHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 013928 341 -------DPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFAD 391 (434)
Q Consensus 341 -------~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~ 391 (434)
++.. ...+.+.|+..|-+..-++..+.+++++++++++++.++.-.+.++
T Consensus 241 ~~~~~~~~~~~-~~~~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~~vd~~~~~~~~~~~ 297 (300)
T PRK11864 241 KFKLNSPSKTL-LDKKKRKPVEEYLKLQGRFKHLTEEEIKGLQEEIDEMWEEIKKLAK 297 (300)
T ss_pred EEEEccCCccc-cccccCCCHHHHHhhccchhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 0112234666666666666778899999999999999887655543
No 40
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.82 E-value=3.6e-20 Score=173.97 Aligned_cols=123 Identities=24% Similarity=0.226 Sum_probs=98.5
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~ 269 (434)
.+++++||+++|+|+|+++| .++++|||++|||+|+++ .++|.+|+++++|+++||.||+ |++...
T Consensus 49 ~~~~g~mG~~lpaaiGa~la-----------~p~r~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~ 115 (196)
T cd02013 49 PLSFGNCGYALPAIIGAKAA-----------APDRPVVAIAGDGAWGMS--MMEIMTAVRHKLPVTAVVFRNRQWGAEKK 115 (196)
T ss_pred CCCCcccccHHHHHHHHHHh-----------CCCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECchhHHHHH
Confidence 45679999999999999999 688999999999999997 7899999999999888886664 554221
Q ss_pred ccc----------cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 013928 270 HLR----------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (434)
Q Consensus 270 ~~~----------~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~ 329 (434)
.+. ....+|+.+++++||+++++|+. +.++..++++|++.++ .++|+|||+.+.+..
T Consensus 116 ~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~el~~al~~a~~~~~-~~~p~liev~v~~~~ 182 (196)
T cd02013 116 NQVDFYNNRFVGTELESESFAKIAEACGAKGITVDK--PEDVGPALQKAIAMMA-EGKTTVIEIVCDQEL 182 (196)
T ss_pred HHHHHcCCCcccccCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHHhcCC-CCCeEEEEEEeCccc
Confidence 110 11357999999999999999985 6688888887775433 478999999986544
No 41
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.82 E-value=6.9e-20 Score=172.67 Aligned_cols=123 Identities=22% Similarity=0.229 Sum_probs=99.1
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~ 270 (434)
.+++|+||+++|.|+|+++| .|+++|||++|||+|++. .++|.+|.++++|+++||.||+ +++...
T Consensus 53 ~~~~GsmG~~lpaaiGa~la-----------~p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~lpviivV~NN~-~yg~~~ 118 (202)
T cd02006 53 CGQAGPLGWTVPAALGVAAA-----------DPDRQVVALSGDYDFQFM--IEELAVGAQHRIPYIHVLVNNA-YLGLIR 118 (202)
T ss_pred cCCccchhhhhHHHHhHHhh-----------CCCCeEEEEEeChHhhcc--HHHHHHHHHhCCCeEEEEEeCc-hHHHHH
Confidence 45679999999999999999 788999999999999997 7999999999999888888886 333322
Q ss_pred ccc----------------------ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928 271 LRA----------------------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (434)
Q Consensus 271 ~~~----------------------~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~ 328 (434)
..+ ...+|+.++|++||+++.+|+. +.++..++++|++..+..++|+|||+.+.+.
T Consensus 119 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~el~~al~~a~~~~~~~~~p~liev~i~~~ 196 (202)
T cd02006 119 QAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVTK--PEELAAAFEQAKKLMAEHRVPVVVEAILERV 196 (202)
T ss_pred HHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHHHhcccCCCcEEEEEEeccc
Confidence 111 0147999999999999999984 5688888887775443457999999998554
Q ss_pred C
Q 013928 329 R 329 (434)
Q Consensus 329 ~ 329 (434)
.
T Consensus 197 ~ 197 (202)
T cd02006 197 T 197 (202)
T ss_pred c
Confidence 3
No 42
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.81 E-value=1.8e-18 Score=191.85 Aligned_cols=240 Identities=18% Similarity=0.141 Sum_probs=165.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCCh-HHHHHHHHHhcC------CCCEEEccCcchHHHH----
Q 013928 85 TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQ-EAVSTGFIKLLK------KEDSVVSTYRDHVHAL---- 153 (434)
Q Consensus 85 s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~Gq-Ea~~~g~~~~L~------~~D~v~~~yR~~~~~L---- 153 (434)
.+.++.+-....++-..++.-...-...+++.|+..++.+- +-..++....|+ .+|.|+. .||+...
T Consensus 84 gd~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~lYA~ 161 (896)
T PRK13012 84 GDLALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRGRDDAGGGDLVYF--QPHSAPGIYAR 161 (896)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHHHHHHHHHHhhcCCCCCCCCCCEEEE--CcchHHHHHHH
Confidence 34455555555555555543322222234555654444433 233445556676 4787776 4676532
Q ss_pred --HcCC-CHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEE
Q 013928 154 --SKGV-PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAF 230 (434)
Q Consensus 154 --a~G~-~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~ 230 (434)
..|. +.++ +..+..... ..|-.+..|....+-.+.-.+|+||.|++.|+|+|++.||...+......+++|+|+
T Consensus 162 ~~l~G~l~~e~-L~~fR~~~~--~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~ 238 (896)
T PRK13012 162 AFLEGRLSEEQ-LDHFRQEIG--GPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGF 238 (896)
T ss_pred HHHcCCCCHHH-HHHhcCCCC--CCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEE
Confidence 2564 5544 445553322 122233223222111234468999999999999999998764322222567899999
Q ss_pred eCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCccccccccc-CchhhhccccCCCcEEEE---------------
Q 013928 231 FGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHV--------------- 293 (434)
Q Consensus 231 ~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~~~-~~d~~~~a~a~Gi~~~~V--------------- 293 (434)
+|||++++|++||++.+|++++|+ +|+||++|...+..+...... ..++.++++++||.+++|
T Consensus 239 lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~ 318 (896)
T PRK13012 239 FGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTT 318 (896)
T ss_pred EchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCc
Confidence 999999999999999999999998 999999999899888765433 368999999999999999
Q ss_pred -----------e-------------------------------------------CCCHHHHHHHHHHHHHHHHccCCCE
Q 013928 294 -----------D-------------------------------------------GMDVLKVREVAKEAIERARRGEGPT 319 (434)
Q Consensus 294 -----------d-------------------------------------------G~D~~av~~a~~~Al~~ar~~~gP~ 319 (434)
| |||+.+|++|+..|.+ ..++|+
T Consensus 319 ~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~---~~~~Pt 395 (896)
T PRK13012 319 GALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVR---HKGQPT 395 (896)
T ss_pred cHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh---CCCCCE
Confidence 8 9999999998876653 235899
Q ss_pred EEEEEEecCCCCC
Q 013928 320 LVECETYRFRGHS 332 (434)
Q Consensus 320 lIev~t~R~~gHs 332 (434)
+|.++|.+++|.+
T Consensus 396 vIla~TvkG~G~~ 408 (896)
T PRK13012 396 VILAKTKKGYGMG 408 (896)
T ss_pred EEEEEeeecCCCC
Confidence 9999999999976
No 43
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.80 E-value=2.3e-19 Score=164.66 Aligned_cols=116 Identities=28% Similarity=0.340 Sum_probs=94.0
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~ 269 (434)
.+..|+||+++|+|+|+++| .++++|||++|||+++++ .++|++|++++||+++||.|| +|++...
T Consensus 44 ~~~~g~mG~~lp~AiGa~la-----------~~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~ 110 (172)
T cd02004 44 AGTFGTLGVGLGYAIAAALA-----------RPDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLD 110 (172)
T ss_pred CCCCCcccchHHHHHHHHHh-----------CCCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchh
Confidence 45679999999999999999 678999999999999987 799999999999977777766 5766543
Q ss_pred ccc-----------cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928 270 HLR-----------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 270 ~~~-----------~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t 325 (434)
.+. ....+|+.+++++||+++.+|++ +.++.++++++ +..++|+|||+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~--~~el~~al~~a----~~~~~p~liev~i 171 (172)
T cd02004 111 GQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVTT--PEELKPALKRA----LASGKPALINVII 171 (172)
T ss_pred hhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHH----HHcCCCEEEEEEc
Confidence 221 11357899999999999999984 66776665554 4568999999976
No 44
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.80 E-value=7.1e-18 Score=186.57 Aligned_cols=240 Identities=19% Similarity=0.150 Sum_probs=164.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCCh-HHHHHHHHHhcCC------CCEEEccCcchHHHH---
Q 013928 84 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQ-EAVSTGFIKLLKK------EDSVVSTYRDHVHAL--- 153 (434)
Q Consensus 84 ~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~Gq-Ea~~~g~~~~L~~------~D~v~~~yR~~~~~L--- 153 (434)
....++.+.....++...++.-........+..|+..++.+- +-..++....|+. +|+|+. .+|+..+
T Consensus 75 pg~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~lYA 152 (891)
T PRK09405 75 PGDLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRAPNEPHGGDLVFF--QGHASPGIYA 152 (891)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCCCCCCCCCCEEEE--CchHHHHHHH
Confidence 345567777777777666664322222222344554333332 2334555666764 687774 4776542
Q ss_pred ---HcCC-CHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEE
Q 013928 154 ---SKGV-PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLA 229 (434)
Q Consensus 154 ---a~G~-~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~ 229 (434)
..|. +.++ +..+....++ .|-++..|....+-.+.-.+++||.|++.|+|+|++.||...+......+++|||
T Consensus 153 ~~~l~G~l~~e~-L~~fR~~~~g--~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~ 229 (891)
T PRK09405 153 RAFLEGRLTEEQ-LDNFRQEVDG--KGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWA 229 (891)
T ss_pred HHHHcCCCCHHH-HHHhcCCCCC--CCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEEE
Confidence 2564 5444 4445543221 1222222332211112335789999999999999998865332222256789999
Q ss_pred EeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCccccccccc-CchhhhccccCCCcEEEE--------------
Q 013928 230 FFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHV-------------- 293 (434)
Q Consensus 230 ~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~~~-~~d~~~~a~a~Gi~~~~V-------------- 293 (434)
++|||++++|.+||++.+|++++|+ +|+||++|...+..++..... ..++.++++++||.++.|
T Consensus 230 ~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~ 309 (891)
T PRK09405 230 FLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDT 309 (891)
T ss_pred EEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhccCC
Confidence 9999999999999999999999998 999999999899888765322 468999999999999999
Q ss_pred ------------e-------------------------------------------CCCHHHHHHHHHHHHHHHHccCCC
Q 013928 294 ------------D-------------------------------------------GMDVLKVREVAKEAIERARRGEGP 318 (434)
Q Consensus 294 ------------d-------------------------------------------G~D~~av~~a~~~Al~~ar~~~gP 318 (434)
| |||+.+|++|+..|.+ ..++|
T Consensus 310 ~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~---~~~~P 386 (891)
T PRK09405 310 SGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVE---HKGQP 386 (891)
T ss_pred ccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHh---CCCCC
Confidence 4 9999999998877653 23689
Q ss_pred EEEEEEEecCCCC
Q 013928 319 TLVECETYRFRGH 331 (434)
Q Consensus 319 ~lIev~t~R~~gH 331 (434)
++|.++|.+++|.
T Consensus 387 tvIia~TvkG~G~ 399 (891)
T PRK09405 387 TVILAKTIKGYGM 399 (891)
T ss_pred EEEEEeceecCCC
Confidence 9999999999998
No 45
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.79 E-value=3.7e-19 Score=165.45 Aligned_cols=118 Identities=27% Similarity=0.450 Sum_probs=93.1
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~ 269 (434)
.+++|+||+++|.|+|+++| .++++|||++|||+|+++ .++|.+|+++++|+++||.||+ |++...
T Consensus 46 ~~~~g~mG~~lp~aiGa~la-----------~~~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpi~ivV~nN~~~~~~~~ 112 (186)
T cd02015 46 SGGLGTMGFGLPAAIGAKVA-----------RPDKTVICIDGDGSFQMN--IQELATAAQYNLPVKIVILNNGSLGMVRQ 112 (186)
T ss_pred CCCccchhchHHHHHHHHHh-----------CCCCeEEEEEcccHHhcc--HHHHHHHHHhCCCeEEEEEECCccHHHHH
Confidence 34679999999999999999 678899999999999986 7889999999999888888776 332110
Q ss_pred c--------c---ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 270 H--------L---RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 270 ~--------~---~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
. . .....+|+.+++++||+++++|++. .++.+ ++++++..++|+|||+.+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~--~el~~----al~~a~~~~~p~liev~~~~ 175 (186)
T cd02015 113 WQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRVEKP--EELEA----ALKEALASDGPVLLDVLVDP 175 (186)
T ss_pred HHHHHcCCceeeccCCCCCCHHHHHHHCCCceEEeCCH--HHHHH----HHHHHHhCCCCEEEEEEeCC
Confidence 0 0 1113578999999999999999863 45555 45555567899999999864
No 46
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.77 E-value=1.8e-18 Score=159.20 Aligned_cols=115 Identities=30% Similarity=0.441 Sum_probs=93.3
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~ 269 (434)
.++ |+||+++|+|+|+++| .++++|||++|||+|+++ .++|.+|.++++|+++||.||+ |++...
T Consensus 46 ~~~-g~mG~~lp~aiGaala-----------~~~~~vv~i~GDG~f~~~--~~el~ta~~~~~p~~~iV~nN~~~~~~~~ 111 (178)
T cd02002 46 LRG-GGLGWGLPAAVGAALA-----------NPDRKVVAIIGDGSFMYT--IQALWTAARYGLPVTVVILNNRGYGALRS 111 (178)
T ss_pred cCC-ccccchHHHHHHHHhc-----------CCCCeEEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEcCccHHHHHH
Confidence 345 9999999999999999 578899999999999998 5899999999999999988885 766432
Q ss_pred ccc-----------------cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928 270 HLR-----------------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 270 ~~~-----------------~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t 325 (434)
.+. ....+|+.+++++||+++++|++ +.++.+++++|+ +.++|+|||+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~----~~~~p~vi~v~v 178 (178)
T cd02002 112 FLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREAL----AEGGPALIEVVV 178 (178)
T ss_pred HHHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHHH----hCCCCEEEEEEC
Confidence 110 11347899999999999999987 667777666654 468999999964
No 47
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.77 E-value=1.2e-18 Score=157.93 Aligned_cols=118 Identities=29% Similarity=0.375 Sum_probs=94.8
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcc
Q 013928 189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM 268 (434)
Q Consensus 189 ~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~ 268 (434)
......++||+++|.|+|++++ .++++|+|++|||+++++ +++|++|..+++|+++||.||++...+
T Consensus 40 ~~~~~~g~~G~~~~~a~Gaa~a-----------~~~~~vv~~~GDG~~~~~--~~~l~ta~~~~~~~~~iv~nN~~~~~~ 106 (168)
T cd00568 40 LTSTGFGAMGYGLPAAIGAALA-----------APDRPVVCIAGDGGFMMT--GQELATAVRYGLPVIVVVFNNGGYGTI 106 (168)
T ss_pred EeCCCchhhhhhHHHHHHHHHh-----------CCCCcEEEEEcCcHHhcc--HHHHHHHHHcCCCcEEEEEECCccHHH
Confidence 3456789999999999999999 568899999999999985 899999999999999999888743333
Q ss_pred ccc-----------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928 269 SHL-----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 269 ~~~-----------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t 325 (434)
... .....+|+.+++++||+++++|++ +.++.+ +++++++.++|+|||++|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~--~~~l~~----a~~~a~~~~~p~~i~v~~ 168 (168)
T cd00568 107 RMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVED--PEDLEA----ALAEALAAGGPALIEVKT 168 (168)
T ss_pred HHHHHHHcCCCcccccCCCCCHHHHHHHCCCeEEEECC--HHHHHH----HHHHHHhCCCCEEEEEEC
Confidence 221 222456899999999999999986 456555 444555678999999975
No 48
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.77 E-value=9.7e-18 Score=176.16 Aligned_cols=235 Identities=20% Similarity=0.208 Sum_probs=174.0
Q ss_pred HHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--cCc
Q 013928 71 VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYR 147 (434)
Q Consensus 71 ~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~-~~D~v~~--~yR 147 (434)
++++|+.+..-..+|.++|.++-.. +|.+ +.+...+ -.|++.++.|---+.+++..+++ |.|.++. .|.
T Consensus 4 ~L~~i~~P~dLk~ls~~eL~~La~E---iR~~---li~~vS~--~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQ 75 (627)
T COG1154 4 LLDKINSPADLKKLSIEELPQLADE---IREF---LLEVVSA--TGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQ 75 (627)
T ss_pred hhhhcCCHHHHhhCCHHHHHHHHHH---HHHH---HHHHhcc--CCCccCCCcChhhhhHHHHHHhCCCCCCeEEecCcc
Confidence 5778888888888999999888755 4443 2222222 24788889999889999999998 7898877 899
Q ss_pred chHHHHHcCCCHHHHHHHHhcCCC--CCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928 148 DHVHALSKGVPARAVMSELFGKAT--GCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (434)
Q Consensus 148 ~~~~~La~G~~~~~i~~el~g~~~--g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~ 225 (434)
.+.|.|..|.. +-|..+..+.. |.+ -+..|-| -.+ ..|+-+.++++|+|+|.|...+ +.++
T Consensus 76 aYpHKiLTGR~--e~f~tlRq~~GlsGf~-~r~ESe~------D~f-~~GHsSTSiSaalG~A~A~~~~-------g~~~ 138 (627)
T COG1154 76 AYPHKILTGRR--EQFDTLRQKDGLSGFP-KREESEH------DWF-GVGHSSTSISAALGMAKARDLK-------GEDR 138 (627)
T ss_pred cchhHHhcCch--hhcchhhhcCCCCCCC-CcccCCC------ccc-ccCchHHHHHHHhhHHHHHHhc-------CCCC
Confidence 99999998865 44444443321 111 0111222 111 3567788999999999997776 6788
Q ss_pred eEEEEeCccccccchHHHHHHHHH-HcCCCeEEEEEcCCccCcccccccc-------cC---------------------
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAA-LWKLPIVFVVENNLWAIGMSHLRAT-------SD--------------------- 276 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~-~~~LPvI~VV~NN~y~is~~~~~~~-------~~--------------------- 276 (434)
.|||++||||+.-|+.+|+||.|. ..+-|+|+|+++|+.+|+.+..... ..
T Consensus 139 ~vvaVIGDGAlt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~ 218 (627)
T COG1154 139 NVVAVIGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPL 218 (627)
T ss_pred cEEEEECCccccchHHHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHH
Confidence 999999999999999999999998 6667899999999988876542100 00
Q ss_pred -------ch-------hhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928 277 -------PQ-------IYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 334 (434)
Q Consensus 277 -------~d-------~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~ 334 (434)
.+ ....++.+|+.++ -|||+|++++..+++ .++..++|+||+++|-++.|...+
T Consensus 219 ~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk----~~kd~~gPvllHv~T~KGKGY~pA 287 (627)
T COG1154 219 KRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTLK----NAKDLKGPVLLHVVTKKGKGYKPA 287 (627)
T ss_pred HHHHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHHHH----HHhcCCCCEEEEEEecCCCCCChh
Confidence 00 0125778899988 899999999888555 556789999999999999998866
No 49
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.77 E-value=3.5e-18 Score=164.89 Aligned_cols=226 Identities=21% Similarity=0.225 Sum_probs=148.0
Q ss_pred HhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--cCcch
Q 013928 73 EKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYRDH 149 (434)
Q Consensus 73 ~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~-~~D~v~~--~yR~~ 149 (434)
++|+.+..-..++.++|.+|-.. +|.| +.+. -.+..|++.++.|---+.+|+..+++ |.|.++. .|..+
T Consensus 2 ~~I~~p~dlk~ls~~eL~~La~e---iR~~---ii~~--vs~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y 73 (270)
T PF13292_consen 2 DKINSPEDLKKLSIEELEQLAQE---IREF---IIET--VSKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAY 73 (270)
T ss_dssp GG-SSHHHHTTS-GGGHHHHHHH---HHHH---HHHH--CTCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-H
T ss_pred CCCCCHHHHHcCCHHHHHHHHHH---HHHH---HHHH--HhhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccc
Confidence 56777777788899999888755 5554 2222 23445788788999888999999998 7998888 89999
Q ss_pred HHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEE
Q 013928 150 VHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLA 229 (434)
Q Consensus 150 ~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~ 229 (434)
.|.|..|.. +-|..+... .|-.|-......++-.+ +.|+-+.++++|+|+|.|..++ +.+..||+
T Consensus 74 ~HKiLTGR~--~~f~TlRq~-----gGlSGF~~r~ES~~D~f-~~GHsstsiSaa~Gma~ar~l~-------~~~~~vVa 138 (270)
T PF13292_consen 74 VHKILTGRR--DRFHTLRQY-----GGLSGFPKRSESEYDAF-GAGHSSTSISAALGMAVARDLK-------GEDRKVVA 138 (270)
T ss_dssp HHHHCTTTC--CCGGGTTST-----TS--SS--TTT-TT--S---SSSS-HHHHHHHHHHHHHHH-------TS---EEE
T ss_pred hhhhccCcH--HHhchhhhc-----CCcCCCCCcccCCCCcc-cCCccHhHHHHHHHHHHHHHhc-------CCCCcEEE
Confidence 999987753 112222211 12222111111112222 3578899999999999998877 56889999
Q ss_pred EeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccc-------ccC--------------------------
Q 013928 230 FFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------TSD-------------------------- 276 (434)
Q Consensus 230 ~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~-------~~~-------------------------- 276 (434)
++|||++.-|+.+|+||.|...+-++|+|+++|+..|+-..... +..
T Consensus 139 VIGDGalt~Gma~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r 218 (270)
T PF13292_consen 139 VIGDGALTGGMAFEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKR 218 (270)
T ss_dssp EEETTGGGSHHHHHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC---------------------------------
T ss_pred EECCcchhHHHHHHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999998887543110 000
Q ss_pred -c----h-hhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928 277 -P----Q-IYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 277 -~----d-~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t 325 (434)
. . ...+++.+|+.++ .|||+|+.++.++++ .++..++|+||+++|
T Consensus 219 ~~~s~K~~~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~----~~K~~~gPvllHV~T 270 (270)
T PF13292_consen 219 IKESLKGFSPNLFEELGFDYIGPIDGHDLEELIEVLE----NAKDIDGPVLLHVIT 270 (270)
T ss_dssp ----------CCCHHCT-EEEEEEETT-HHHHHHHHH----HHCCSSSEEEEEEE-
T ss_pred HhhhhhhhhHHHHHHcCCeEEeccCCCCHHHHHHHHH----HHhcCCCCEEEEEeC
Confidence 0 0 1135677899988 899999998888554 566789999999987
No 50
>PRK05261 putative phosphoketolase; Provisional
Probab=99.75 E-value=1.5e-17 Score=182.04 Aligned_cols=205 Identities=19% Similarity=0.251 Sum_probs=156.4
Q ss_pred eecccccCCCChHHHHHHHHHhcCCC--CEEEccCcchHHHHH------cC--------CCHHHH-HHHHhcCCCCCccC
Q 013928 114 KMFGFVHLYNGQEAVSTGFIKLLKKE--DSVVSTYRDHVHALS------KG--------VPARAV-MSELFGKATGCCRG 176 (434)
Q Consensus 114 k~~G~~h~~~GqEa~~~g~~~~L~~~--D~v~~~yR~~~~~La------~G--------~~~~~i-~~el~g~~~g~~~G 176 (434)
+..|++.++.|+..+.+.+..++++. |+++-.--||+..+. .| ++..+. |..++.+-.- .|
T Consensus 47 r~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~--pg 124 (785)
T PRK05261 47 RLLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSF--PG 124 (785)
T ss_pred ccCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccC--CC
Confidence 45788888999999999999999875 655555557775432 35 333221 2223322211 11
Q ss_pred CCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchH---HHHHHHHHHcCC
Q 013928 177 QGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF---FECLNMAALWKL 253 (434)
Q Consensus 177 ~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~---~EaLn~A~~~~L 253 (434)
|.+.|......++....|+||++++.|+|+|+. +++.+|+|++|||++++|.+ |++.+++...++
T Consensus 125 -g~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~-----------~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~ 192 (785)
T PRK05261 125 -GIPSHAAPETPGSIHEGGELGYSLSHAYGAAFD-----------NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATD 192 (785)
T ss_pred -CcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc-----------CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccC
Confidence 335677655668888899999999999999987 67889999999999999973 666677777777
Q ss_pred C-eEEEEEcCCccCcccccccc-cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHH-----------Hcc---CC
Q 013928 254 P-IVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERA-----------RRG---EG 317 (434)
Q Consensus 254 P-vI~VV~NN~y~is~~~~~~~-~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~a-----------r~~---~g 317 (434)
. |+.|+++|+|+|++++.... ...++.+++++|||+++.|||+|+.+++.++++|++.+ |.+ .+
T Consensus 193 g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~ 272 (785)
T PRK05261 193 GAVLPILHLNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTR 272 (785)
T ss_pred CCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 7 78888899999999987654 44789999999999999999999999998876666544 334 58
Q ss_pred CE--EEEEEEecCCCCC
Q 013928 318 PT--LVECETYRFRGHS 332 (434)
Q Consensus 318 P~--lIev~t~R~~gHs 332 (434)
|+ +|.++|.+++|-+
T Consensus 273 P~wp~Ii~rT~kG~g~p 289 (785)
T PRK05261 273 PRWPMIVLRTPKGWTGP 289 (785)
T ss_pred CCceEEEEECCccCCCC
Confidence 99 9999999988844
No 51
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.75 E-value=1.5e-17 Score=153.87 Aligned_cols=119 Identities=26% Similarity=0.234 Sum_probs=92.3
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~ 269 (434)
...+++||+++|+|+|+++| .+++.||+++|||++++.. +++|.+|.++++|+++||.||+ |++...
T Consensus 47 ~~~~g~mG~gl~~AiGa~la-----------~p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~ 114 (178)
T cd02008 47 IDTCTCMGASIGVAIGMAKA-----------SEDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGG 114 (178)
T ss_pred ccccccCccHHHHHhhHHhh-----------CCCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCC
Confidence 34689999999999999999 6788999999999997632 6999999999999877777775 443221
Q ss_pred ccc---------cccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928 270 HLR---------ATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 270 ~~~---------~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t 325 (434)
... ....+|+.+++++||+++++| +..|+.++.+++++|+ +.++|+||+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~----~~~gp~lI~v~~ 176 (178)
T cd02008 115 QPHPGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEAL----AVPGVSVIIAKR 176 (178)
T ss_pred CCCCCCcccccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHH----hCCCCEEEEEeC
Confidence 110 012468999999999999999 5667666666666554 468999999964
No 52
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.74 E-value=1.2e-17 Score=154.32 Aligned_cols=118 Identities=25% Similarity=0.326 Sum_probs=93.6
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~ 269 (434)
.+..|+||+++|+|+|+++| .++++|+|++|||+++++ ..+|.++.++++|+++||.||+ |++...
T Consensus 47 ~~~~g~mG~~~~~aiGa~~a-----------~~~~~vv~i~GDG~f~~~--~~el~t~~~~~lp~~~iv~NN~~~~~~~~ 113 (178)
T cd02014 47 SGLLATMGNGLPGAIAAKLA-----------YPDRQVIALSGDGGFAML--MGDLITAVKYNLPVIVVVFNNSDLGFIKW 113 (178)
T ss_pred CCCCchhhhHHHHHHHHHHh-----------CCCCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCchhHHHH
Confidence 45679999999999999999 678899999999999998 6779999999999988888885 665221
Q ss_pred c---------cccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 270 H---------LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 270 ~---------~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
. ......+|+.+++++||+++++|+. +.++.++++ .+++.++|+|||+.+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~--~~el~~~l~----~a~~~~~p~liev~~~~ 174 (178)
T cd02014 114 EQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVED--PDELEAALD----EALAADGPVVIDVVTDP 174 (178)
T ss_pred HHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeCC--HHHHHHHHH----HHHhCCCCEEEEEEeCC
Confidence 0 0011346899999999999999984 556655544 44556899999999854
No 53
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.74 E-value=8e-18 Score=159.13 Aligned_cols=120 Identities=17% Similarity=0.135 Sum_probs=94.7
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~ 269 (434)
.++.|+||+++|+|+|+++| .+++.|||++|||+|+++ ..+|.+|+++++|+++||.||+ |++...
T Consensus 44 ~~~~gsmG~~lpaAiGa~la-----------~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~ 110 (205)
T cd02003 44 EYGYSCMGYEIAAGLGAKLA-----------KPDREVYVLVGDGSYLML--HSEIVTAVQEGLKIIIVLFDNHGFGCINN 110 (205)
T ss_pred CCCcchhhhHHHHHHHHHHh-----------CCCCeEEEEEccchhhcc--HHHHHHHHHcCCCCEEEEEECCccHHHHH
Confidence 35789999999999999999 688999999999999987 6899999999999777776664 554211
Q ss_pred cc-----------c------------cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 270 HL-----------R------------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 270 ~~-----------~------------~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
.. . ....+|+.+++++||+++.+|+ ++.++.+++++|+ +.++|+|||+.+.
T Consensus 111 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIeV~v~ 184 (205)
T cd02003 111 LQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAK----ASDRTTVIVIKTD 184 (205)
T ss_pred HHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEee
Confidence 00 0 0124799999999999999996 6678777666654 5689999999986
Q ss_pred cCC
Q 013928 327 RFR 329 (434)
Q Consensus 327 R~~ 329 (434)
+..
T Consensus 185 ~~~ 187 (205)
T cd02003 185 PKS 187 (205)
T ss_pred ccc
Confidence 543
No 54
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.73 E-value=3.1e-17 Score=152.14 Aligned_cols=129 Identities=17% Similarity=0.230 Sum_probs=96.9
Q ss_pred cccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCC-CeEEEE-EcCCccCccccc
Q 013928 194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKL-PIVFVV-ENNLWAIGMSHL 271 (434)
Q Consensus 194 ~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~L-PvI~VV-~NN~y~is~~~~ 271 (434)
+|+||+++|.|+|+++| .+ ++|||++|||+++++ .++|.++.++++ |+++|| +||+|++.....
T Consensus 41 ~g~mG~~lp~AiGaala-----------~~-~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~ 106 (179)
T cd03372 41 LGSMGLASSIGLGLALA-----------QP-RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGNQP 106 (179)
T ss_pred ccchhhHHHHHHHHHhc-----------CC-CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCCCC
Confidence 79999999999999999 45 789999999999876 689999999995 666655 555677643221
Q ss_pred ccc-cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHH
Q 013928 272 RAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKA 346 (434)
Q Consensus 272 ~~~-~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~ 346 (434)
... ..+|+.+++++||+++.+|++ ++.++.++++++ + ++|++||+.|.+..+ + .+-.++++.+.+
T Consensus 107 ~~~~~~~d~~~lA~a~G~~~~~v~~-~~~el~~al~~a----~--~gp~lIev~~~~~~~-~--~~~~~~~~~~~~ 172 (179)
T cd03372 107 THAGKKTDLEAVAKACGLDNVATVA-SEEAFEKAVEQA----L--DGPSFIHVKIKPGNT-D--VPNIPRDPVEIK 172 (179)
T ss_pred CCCCCCCCHHHHHHHcCCCeEEecC-CHHHHHHHHHHh----c--CCCEEEEEEEcCCCC-C--CCCCCCCHHHHH
Confidence 111 257899999999999999997 677777766555 3 689999999965544 1 233455555443
No 55
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.73 E-value=6.5e-18 Score=156.25 Aligned_cols=118 Identities=23% Similarity=0.372 Sum_probs=94.6
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~ 269 (434)
.+++|+||+++|.|+|+++| .+++.|||++|||+|+++ .++|.+|+++++|+++||.||+ |++...
T Consensus 44 ~~~~g~mG~~lp~aiGa~la-----------~~~~~vv~i~GDG~f~m~--~~eL~ta~~~~l~vi~vV~NN~~~g~~~~ 110 (177)
T cd02010 44 SNGLATMGVALPGAIGAKLV-----------YPDRKVVAVSGDGGFMMN--SQELETAVRLKIPLVVLIWNDNGYGLIKW 110 (177)
T ss_pred CCCChhhhhHHHHHHHHHHh-----------CCCCcEEEEEcchHHHhH--HHHHHHHHHHCCCeEEEEEECCcchHHHH
Confidence 56789999999999999999 688999999999999986 6899999999999888877765 554211
Q ss_pred cc---------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 270 HL---------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 270 ~~---------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
.+ .....+|+.+++++||+++.+|+ +++++.+++++++ ..++|+|||+.+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~ 171 (177)
T cd02010 111 KQEKEYGRDSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERAL----AADGVHVIDCPVDY 171 (177)
T ss_pred HHHHhcCCcccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEecc
Confidence 00 00124689999999999999997 5667777666664 46899999999854
No 56
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=2.7e-16 Score=164.55 Aligned_cols=216 Identities=20% Similarity=0.229 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHHhcCeecccccCCCCh-HHHHHHHHHhcC--C-------CCEEEcc--Ccc---hHHHHHcCC-CH
Q 013928 96 MILGRSFEDMCAQMYYRGKMFGFVHLYNGQ-EAVSTGFIKLLK--K-------EDSVVST--YRD---HVHALSKGV-PA 159 (434)
Q Consensus 96 M~~~R~fe~~~~~~~~~gk~~G~~h~~~Gq-Ea~~~g~~~~L~--~-------~D~v~~~--yR~---~~~~La~G~-~~ 159 (434)
|-.+|..+-.+...-.. |..+.+.|. |.+.+..-..|+ + .|.++.+ |-+ +++....|. +.
T Consensus 14 ~n~lri~si~~~~~a~s----ghp~s~~s~A~~~~vlf~~~mr~~~~~p~~~n~Drfvls~GHa~~llYa~~~l~G~~~~ 89 (632)
T KOG0523|consen 14 VNNLRILSIDATSAAKS----GHPGSPLSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLSNGHACPLLYAHWHLAGYDRE 89 (632)
T ss_pred hhhhhhhhHHHHHhhhc----CCCCCccccchhhhhhhhhheecccCCcCCCCCceEEEeccccchHHHHHHHHhccCcH
Confidence 45566665443333233 444445553 223333333333 2 4655553 343 333333564 44
Q ss_pred HHH--HHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc
Q 013928 160 RAV--MSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN 237 (434)
Q Consensus 160 ~~i--~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~ 237 (434)
+++ |+++-++.+++... +...+.-++|++|++++.|+|+|++.|+.+ ..+..|+|++|||+++
T Consensus 90 edl~~~Rq~~s~t~ghp~~---------~~~~v~v~TG~lgQgis~a~GmA~~~k~~~------k~~~rv~~vlGDG~~~ 154 (632)
T KOG0523|consen 90 EDLKNFRQIGSDTPGHPEP---------ELPGVEVATGPLGQGISNAVGMAYAGKHLG------KASNRVYCVLGDGCLT 154 (632)
T ss_pred HHHHHHHhhCCCCCCCCcc---------cCCCceeccCCccchHHHHHHHHHHHHhhc------cccceEEEEEcCchhc
Confidence 444 45555555544321 112344567999999999999999999884 2478899999999999
Q ss_pred cchHHHHHHHHHHcCCC-eEEEEEcCCccCcccccccccCchhhh-ccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHcc
Q 013928 238 NGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATSDPQIYK-KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG 315 (434)
Q Consensus 238 ~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~~~~~d~~~-~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~ 315 (434)
+|++||++++|+.|+|+ +|+|.+||+.+++..+.... ..|+.+ +.++|||+++.|||.|++++.+++.+|. ...
T Consensus 155 eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~-~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~---~~k 230 (632)
T KOG0523|consen 155 EGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGF-DEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAK---SVK 230 (632)
T ss_pred cchHHHHHhhhhhcccCCEEEEEccccccCCCCCcccc-cccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhh---hcc
Confidence 99999999999999999 88888899989988776554 567777 9999999999999999888888777665 245
Q ss_pred CCCEEEEEEEecCCCCCCC
Q 013928 316 EGPTLVECETYRFRGHSLA 334 (434)
Q Consensus 316 ~gP~lIev~t~R~~gHs~~ 334 (434)
++|++|-++|+.++|-...
T Consensus 231 ~kpt~i~~~t~~g~G~~~i 249 (632)
T KOG0523|consen 231 GKPTAIKATTFIGRGSPYI 249 (632)
T ss_pred CCceeeeeeeeeecCcccc
Confidence 7899999999999986543
No 57
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.72 E-value=7e-18 Score=151.85 Aligned_cols=116 Identities=31% Similarity=0.487 Sum_probs=95.3
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~ 269 (434)
....++||+++|.|+|+++| .|+++|||++|||+|.+. ..+|.++.++++|+++||.||+ |++...
T Consensus 24 ~~~~g~mG~~~~~aiGa~~a-----------~p~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~~~~~~ 90 (153)
T PF02775_consen 24 SGGFGSMGYALPAAIGAALA-----------RPDRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGYGMTGG 90 (153)
T ss_dssp STTTT-TTTHHHHHHHHHHH-----------STTSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBSHHHHH
T ss_pred CCCccccCCHHHhhhHHHhh-----------cCcceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcceEecc
Confidence 45789999999999999998 789999999999999886 7899999999999888888775 433211
Q ss_pred cc----------c---cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 270 HL----------R---ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 270 ~~----------~---~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
.. . ....+|+.+++++||+++.+|+..|++++.+++++|+ +.++|+||||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~----~~~gp~vIeV 153 (153)
T PF02775_consen 91 QQTPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREAL----ESGGPAVIEV 153 (153)
T ss_dssp HHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH----HSSSEEEEEE
T ss_pred ccccCcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH----hCCCcEEEEc
Confidence 10 0 1345789999999999999999888889888777665 6789999997
No 58
>PRK06163 hypothetical protein; Provisional
Probab=99.72 E-value=4.7e-17 Score=153.73 Aligned_cols=130 Identities=19% Similarity=0.292 Sum_probs=99.5
Q ss_pred cccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHc-CCCeEEEEEcCC-ccCccccc
Q 013928 194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW-KLPIVFVVENNL-WAIGMSHL 271 (434)
Q Consensus 194 ~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~-~LPvI~VV~NN~-y~is~~~~ 271 (434)
+|+||+++|+|+|+++| .|+++|||++|||+|++. .++|.+++++ ++|+++||.||+ |++.....
T Consensus 56 ~GsMG~glpaAiGaalA-----------~p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~ 122 (202)
T PRK06163 56 LGSMGLAFPIALGVALA-----------QPKRRVIALEGDGSLLMQ--LGALGTIAALAPKNLTIIVMDNGVYQITGGQP 122 (202)
T ss_pred ecccccHHHHHHHHHHh-----------CCCCeEEEEEcchHHHHH--HHHHHHHHHhcCCCeEEEEEcCCchhhcCCcc
Confidence 78999999999999999 788999999999999986 7899999887 689888888884 55422111
Q ss_pred -ccccCchhhhccccCCCc-EEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHH
Q 013928 272 -RATSDPQIYKKGPAFGMP-GFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKA 346 (434)
Q Consensus 272 -~~~~~~d~~~~a~a~Gi~-~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~ 346 (434)
.....+|+.+++++||++ +++|+ ++.++..++++++ +.++|+|||+.+.+...-+ ...|++.|.+
T Consensus 123 ~~~~~~~Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~i~~~~~~~----~~~~~~~~~~ 189 (202)
T PRK06163 123 TLTSQTVDVVAIARGAGLENSHWAA--DEAHFEALVDQAL----SGPGPSFIAVRIDDKPGVG----TTERDPAQIR 189 (202)
T ss_pred CCCCCCCCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecCCCCCC----CCCCCHHHHH
Confidence 111347999999999998 67887 5668777666665 4589999999986433211 2246777765
No 59
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.71 E-value=2.1e-17 Score=178.98 Aligned_cols=121 Identities=21% Similarity=0.204 Sum_probs=98.0
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~ 270 (434)
.+++|+||+++|.|+|+++| .|+++||+++|||+|+++ .++|.||.++++|+++||.||+ +++...
T Consensus 414 ~~~~gsmG~glpaaiGa~lA-----------~pdr~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~-~yg~i~ 479 (588)
T TIGR01504 414 CGQAGPLGWTIPAALGVCAA-----------DPKRNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNA-YLGLIR 479 (588)
T ss_pred CCccccccchHhHHHhhhhh-----------CCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCC-chHHHH
Confidence 45679999999999999999 789999999999999997 7899999999999888888776 333221
Q ss_pred cccc----------------------cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 271 LRAT----------------------SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 271 ~~~~----------------------~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
..|. .++||.+++++||+++.+|+ ++.++..++++|++...+.++|+|||+.+.+
T Consensus 480 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 480 QAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred HHHHHhcccccceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 1100 14789999999999999997 5668888877777544346899999999854
No 60
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.70 E-value=5.6e-17 Score=150.82 Aligned_cols=119 Identities=22% Similarity=0.242 Sum_probs=92.3
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~ 269 (434)
.+.+|+||+++|.|+|+++| .+++.|+|++|||+|+++ ..+|.+++++++|+++||.|| +|++...
T Consensus 46 ~~~~g~mG~~l~~aiGaala-----------~~~~~vv~i~GDG~f~~~--~~el~ta~~~~~p~~ivV~nN~~~~~~~~ 112 (183)
T cd02005 46 QPLWGSIGYSVPAALGAALA-----------APDRRVILLVGDGSFQMT--VQELSTMIRYGLNPIIFLINNDGYTIERA 112 (183)
T ss_pred ccchhhHhhhHHHHHHHHHh-----------CCCCeEEEEECCchhhcc--HHHHHHHHHhCCCCEEEEEECCCcEEEEE
Confidence 46789999999999999999 678899999999999886 566999999999966666655 5654321
Q ss_pred ccc------cccCchhhhccccCC----CcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 270 HLR------ATSDPQIYKKGPAFG----MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 270 ~~~------~~~~~d~~~~a~a~G----i~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
.+. ....+|+.+++++|| +++.+|+ ++.++.++++++++ ..++|+|||+.+.+
T Consensus 113 ~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~---~~~~p~liev~~~~ 175 (183)
T cd02005 113 IHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred eccCCcCcccCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence 111 112478999999999 7888886 56788776666653 25799999999864
No 61
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.70 E-value=4.3e-17 Score=174.87 Aligned_cols=120 Identities=28% Similarity=0.376 Sum_probs=99.5
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcc
Q 013928 189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM 268 (434)
Q Consensus 189 ~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~ 268 (434)
..+++.|+||+++|+|+|++++ .|++.|||+.|||+|+|. .++|.||.++++|+++||.||+ ++++
T Consensus 402 ~~s~~~GtMG~glPaAIGAkla-----------~P~r~Vv~i~GDG~F~m~--~qEL~Ta~r~~lpv~ivv~nN~-~~g~ 467 (550)
T COG0028 402 LTSGGLGTMGFGLPAAIGAKLA-----------APDRKVVAIAGDGGFMMN--GQELETAVRYGLPVKIVVLNNG-GYGM 467 (550)
T ss_pred EcCCCCccccchHHHHHHHHhh-----------CCCCcEEEEEcccHHhcc--HHHHHHHHHhCCCEEEEEEECC-cccc
Confidence 4467899999999999999999 789999999999999997 8999999999999999999887 5554
Q ss_pred cccccc-----------cCch-hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928 269 SHLRAT-----------SDPQ-IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (434)
Q Consensus 269 ~~~~~~-----------~~~d-~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~ 328 (434)
....|. .... |.++|++||+++++|+ ++.++..++++| .+.++|+|||+.+.+.
T Consensus 468 v~~~q~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~a----l~~~~p~lidv~id~~ 533 (550)
T COG0028 468 VRQWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEA----LASDGPVLIDVVVDPE 533 (550)
T ss_pred chHHHHHhcCCCcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEecCc
Confidence 443322 0112 9999999999999999 666777755555 5678999999999765
No 62
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.70 E-value=4.1e-16 Score=169.27 Aligned_cols=232 Identities=13% Similarity=0.129 Sum_probs=169.7
Q ss_pred HHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--cCc
Q 013928 71 VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYR 147 (434)
Q Consensus 71 ~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~-~~D~v~~--~yR 147 (434)
++++|+.+..-..++.++|.+|-.. +|.+= ..... .+..|++.++.|---+.+|+..+++ |.|.++. .|.
T Consensus 78 ~L~~i~~P~dlk~L~~~eL~~La~E---iR~~l---i~~v~-s~~GGHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ 150 (701)
T PLN02225 78 ILDSIETPLQLKNLSVKELKLLADE---IRTEL---HSVLW-KKTQKSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQ 150 (701)
T ss_pred hhhhcCCHHHHhhCCHHHHHHHHHH---HHHHH---HHHhh-cccCCCcCCCccHHHHHHHHHHHhCCCCCceeeccccc
Confidence 6899999888888999999888755 55542 22220 1234788889999999999999998 7998888 899
Q ss_pred chHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceE
Q 013928 148 DHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVT 227 (434)
Q Consensus 148 ~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~v 227 (434)
.+.|.|..|..- -|. . +.. .|-.|-......++-.+ +.|+-+.++++|+|+|.|..++ +.++.|
T Consensus 151 ~Y~HKiLTGR~~--~f~-~--Rq~---~GlsGf~~r~ES~~D~f-~~GHssTSiSaalG~a~ardl~-------g~~~~v 214 (701)
T PLN02225 151 TYAHKVLTRRWS--AIP-S--RQK---NGISGVTSQLESEYDSF-GTGHGCNSISAGLGLAVARDIK-------GKRDRV 214 (701)
T ss_pred cchhhHhcCChh--hcC-c--ccc---CCcCCCCCCCCCCCCCC-CCChHHHHHHHHHHHHHHHHhc-------CCCCcE
Confidence 999999988541 121 1 111 12222111111112222 3578889999999999998877 567889
Q ss_pred EEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccc--------cccc--------c-----------------
Q 013928 228 LAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS--------HLRA--------T----------------- 274 (434)
Q Consensus 228 v~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~--------~~~~--------~----------------- 274 (434)
|+++|||++.-|+.+|+||.|+..+-++|+|+++|+++|+.+ .... +
T Consensus 215 vaVIGDGaltgGma~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~ 294 (701)
T PLN02225 215 VAVIDNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKR 294 (701)
T ss_pred EEEEcCcchhhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999876 1100 0
Q ss_pred -cC---------c----h---h-h-hccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccC--CCEEEEEEEecCC
Q 013928 275 -SD---------P----Q---I-Y-KKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGE--GPTLVECETYRFR 329 (434)
Q Consensus 275 -~~---------~----d---~-~-~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~--gP~lIev~t~R~~ 329 (434)
+. . . - . .+++.+|+.++ .|||||+.++..+++.+ +..+ +|+||+++|-++.
T Consensus 295 ~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~----k~~~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 295 IGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREV----SSLDSMGPVLVHVITEENR 367 (701)
T ss_pred CCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHH----HcCCCCCCEEEEEEecCCC
Confidence 00 0 0 0 1 36688999998 89999999998866654 4444 9999999999887
No 63
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.70 E-value=9.6e-17 Score=149.99 Aligned_cols=118 Identities=17% Similarity=0.187 Sum_probs=92.9
Q ss_pred cccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCC-CeEEEEEcCC-ccCccccc
Q 013928 194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKL-PIVFVVENNL-WAIGMSHL 271 (434)
Q Consensus 194 ~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~L-PvI~VV~NN~-y~is~~~~ 271 (434)
+|+||+++|.|+|+++| .+++.|||++|||+|++. .++|.+++++++ |+++||.||+ |++.....
T Consensus 47 ~g~mG~~lpaAiGaala-----------~p~~~Vv~i~GDG~f~m~--~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~ 113 (188)
T cd03371 47 VGSMGHASQIALGIALA-----------RPDRKVVCIDGDGAALMH--MGGLATIGGLAPANLIHIVLNNGAHDSVGGQP 113 (188)
T ss_pred cCccccHHHHHHHHHHh-----------CCCCcEEEEeCCcHHHhh--ccHHHHHHHcCCCCcEEEEEeCchhhccCCcC
Confidence 38999999999999999 678899999999999876 689999999997 5777777775 54422111
Q ss_pred ccccCchhhhccccCCCcE-EEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 013928 272 RATSDPQIYKKGPAFGMPG-FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330 (434)
Q Consensus 272 ~~~~~~d~~~~a~a~Gi~~-~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~g 330 (434)
.....+|+.+++++||+++ .+|+ ++.++.+++++++ +.++|+|||+.+.+..+
T Consensus 114 ~~~~~~d~~~~A~a~G~~~~~~v~--~~~el~~al~~a~----~~~~p~lIev~~~~~~~ 167 (188)
T cd03371 114 TVSFDVSLPAIAKACGYRAVYEVP--SLEELVAALAKAL----AADGPAFIEVKVRPGSR 167 (188)
T ss_pred CCCCCCCHHHHHHHcCCceEEecC--CHHHHHHHHHHHH----hCCCCEEEEEEecCCCC
Confidence 1123579999999999997 5787 6778877666664 45799999999976554
No 64
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.70 E-value=3.3e-17 Score=151.17 Aligned_cols=115 Identities=21% Similarity=0.207 Sum_probs=90.9
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~ 269 (434)
..+.+.||+++|.|+|+++| . +++|||++|||+|++. .++|.+|.++++|+++||.||+ |++-..
T Consensus 47 ~~g~g~mG~~l~~aiGa~la-----------~-~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~v~ivVlNN~~~g~~~~ 112 (175)
T cd02009 47 NRGASGIDGTLSTALGIALA-----------T-DKPTVLLTGDLSFLHD--LNGLLLGKQEPLNLTIVVINNNGGGIFSL 112 (175)
T ss_pred cCCccchhhHHHHHHHHHhc-----------C-CCCEEEEEehHHHHHh--HHHHHhccccCCCeEEEEEECCCCchhee
Confidence 35568899999999999999 4 6789999999999987 7899999999999888888775 543111
Q ss_pred ccc---------cc---cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928 270 HLR---------AT---SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 270 ~~~---------~~---~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t 325 (434)
... .. ..+|+.+++++||+++.+|+ ++.++..++++++ +.++|+|||+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIev~v 174 (175)
T cd02009 113 LPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESAL----AQDGPHVIEVKT 174 (175)
T ss_pred ccCCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHH----hCCCCEEEEEeC
Confidence 000 00 25789999999999999997 5667777666654 468999999975
No 65
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.69 E-value=7.2e-17 Score=146.63 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=90.1
Q ss_pred cccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHc-CCCeEEEEEcCC-ccCccccc
Q 013928 194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW-KLPIVFVVENNL-WAIGMSHL 271 (434)
Q Consensus 194 ~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~-~LPvI~VV~NN~-y~is~~~~ 271 (434)
+|+||+++|.|+|+++| .+ ++|||++|||+|++. .++|.++.++ ++|+++||.||+ |++.....
T Consensus 41 ~gsmG~~lp~AiGa~~a-----------~~-~~Vv~i~GDG~f~m~--~~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~ 106 (157)
T cd02001 41 LGSMGLAGSIGLGLALG-----------LS-RKVIVVDGDGSLLMN--PGVLLTAGEFTPLNLILVVLDNRAYGSTGGQP 106 (157)
T ss_pred ecchhhHHHHHHHHHhc-----------CC-CcEEEEECchHHHhc--ccHHHHHHHhcCCCEEEEEEeCccccccCCcC
Confidence 89999999999999998 33 789999999999876 6789999999 599888887665 55432111
Q ss_pred ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 272 RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 272 ~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
.....+|+.+++++||+++++|+ ++.++.+++++++ ..++|++||+.+.
T Consensus 107 ~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~vi~v~i~ 155 (157)
T cd02001 107 TPSSNVNLEAWAAACGYLVLSAP--LLGGLGSEFAGLL----ATTGPTLLHAPIA 155 (157)
T ss_pred CCCCCCCHHHHHHHCCCceEEcC--CHHHHHHHHHHHH----hCCCCEEEEEEec
Confidence 11125799999999999999986 5778888777665 4579999999874
No 66
>PRK06154 hypothetical protein; Provisional
Probab=99.69 E-value=1.1e-16 Score=172.71 Aligned_cols=121 Identities=21% Similarity=0.242 Sum_probs=97.6
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~ 270 (434)
.+.+|+||+++|.|+|+++| .+++.|||++|||+|++. .++|.||++++||+++||.||+ +++...
T Consensus 427 ~~~~gsmG~glpaaiGa~la-----------~p~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~-~yg~~~ 492 (565)
T PRK06154 427 WGKTTQLGYGLGLAMGAKLA-----------RPDALVINLWGDAAFGMT--GMDFETAVRERIPILTILLNNF-SMGGYD 492 (565)
T ss_pred cCCCcccccHHHHHHHHHHh-----------CCCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECC-ccceee
Confidence 34679999999999999999 788999999999999997 7899999999999888888886 333222
Q ss_pred ccc----------ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928 271 LRA----------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (434)
Q Consensus 271 ~~~----------~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~ 328 (434)
..+ ..++||.+++++||+++.+|+ ++.++.+++++|++..+ .++|+|||+.+.+.
T Consensus 493 ~~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~-~~~p~lIev~v~~~ 557 (565)
T PRK06154 493 KVMPVSTTKYRATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVK-EGTPALLEVITSEE 557 (565)
T ss_pred hhhhhhcCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcc-CCCeEEEEEEeChH
Confidence 110 114689999999999999998 56788888887775432 46899999988543
No 67
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.69 E-value=1.2e-16 Score=148.58 Aligned_cols=113 Identities=19% Similarity=0.248 Sum_probs=89.6
Q ss_pred cccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcC-CCeEEEEEcCC-ccCccccc
Q 013928 194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWK-LPIVFVVENNL-WAIGMSHL 271 (434)
Q Consensus 194 ~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~-LPvI~VV~NN~-y~is~~~~ 271 (434)
+|+||+++|+|+|+++| . +++|||++|||+|+++ .++|.++++++ +|+++||.||+ |++.....
T Consensus 41 ~gsmG~~lpaAiGa~la-----------~-~~~Vv~i~GDG~f~m~--~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~ 106 (181)
T TIGR03846 41 LGSMGLASSIGLGLALA-----------T-DRTVIVIDGDGSLLMN--LGVLPTIAAESPKNLILVILDNGAYGSTGNQP 106 (181)
T ss_pred ccccccHHHHHHHHHHc-----------C-CCcEEEEEcchHHHhh--hhHHHHHHHhCCCCeEEEEEeCCccccccCcC
Confidence 79999999999999999 5 7889999999999987 68999999999 59888888776 55432111
Q ss_pred ccc-cCchhhhccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 272 RAT-SDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 272 ~~~-~~~d~~~~a~a~Gi~~~~-VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
... ..+|+.+++++||+++.+ |+ ++.++.++++ + .+.++|+|||+.+.+
T Consensus 107 ~~~~~~~d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a----~~~~~p~li~v~~~~ 157 (181)
T TIGR03846 107 TPASRRTDLELVAKAAGIRNVEKVA--DEEELRDALK-A----LAMKGPTFIHVKVKP 157 (181)
T ss_pred CCCCCCCCHHHHHHHCCCCeEEEeC--CHHHHHHHHH-H----HcCCCCEEEEEEeCC
Confidence 111 257899999999999998 75 5567766553 3 356799999999854
No 68
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.68 E-value=2.3e-16 Score=147.97 Aligned_cols=119 Identities=23% Similarity=0.257 Sum_probs=92.2
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccc-cccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT-CNNGQFFECLNMAALWKLPIVFVVENNL-WAIGM 268 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa-~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~ 268 (434)
....++||+++|+|+|+++| .|+++||++.|||+ ++++ .++|.+|.++++|+++||.||+ |++..
T Consensus 47 ~~~~g~mG~glpaAiGa~la-----------~p~r~Vv~i~GDGs~f~m~--~~eL~ta~~~~lpv~iiVlnN~~yg~~~ 113 (193)
T cd03375 47 YGFHTLHGRALAVATGVKLA-----------NPDLTVIVVSGDGDLAAIG--GNHFIHAARRNIDITVIVHNNQIYGLTK 113 (193)
T ss_pred cchhhhhccHHHHHHHHHHh-----------CCCCeEEEEeccchHhhcc--HHHHHHHHHhCCCeEEEEEcCcccccCC
Confidence 34458999999999999999 78999999999999 5676 7899999999999888888875 44422
Q ss_pred cccc-c---------------ccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 269 SHLR-A---------------TSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 269 ~~~~-~---------------~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
.... . ...+|+.+++++||++++ ++.-.++.++.+++++|+ +.++|+|||+.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al----~~~gp~vIev~~~ 184 (193)
T cd03375 114 GQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAI----QHKGFSFVEVLSP 184 (193)
T ss_pred CccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHH----hcCCCEEEEEECC
Confidence 1110 0 013689999999999985 233456778888777766 4689999999764
No 69
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.68 E-value=7e-17 Score=174.91 Aligned_cols=124 Identities=23% Similarity=0.280 Sum_probs=98.3
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~ 269 (434)
.+++|+||+++|.|+|+++| .++++|||++|||+|+++ ..+|.+|.++++|+++||.|| +|++...
T Consensus 431 ~~~~g~mG~glp~aiGa~la-----------~p~r~vv~i~GDG~f~~~--~~el~Ta~~~~lpv~ivV~NN~~y~~~~~ 497 (588)
T PRK07525 431 PGSFGNCGYAFPAIIGAKIA-----------CPDRPVVGFAGDGAWGIS--MNEVMTAVRHNWPVTAVVFRNYQWGAEKK 497 (588)
T ss_pred cccccccccHHHHHHHHHHh-----------CCCCcEEEEEcCchHhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHH
Confidence 35679999999999999999 688999999999999997 789999999999988888777 4543210
Q ss_pred cc-----------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 013928 270 HL-----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330 (434)
Q Consensus 270 ~~-----------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~g 330 (434)
.. .....+|+.+++++||+++++|+ ++.++..+++++++.. +.++|+|||+.+.+..|
T Consensus 498 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~-~~~~p~lIev~~~~~~~ 566 (588)
T PRK07525 498 NQVDFYNNRFVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQ-NEGKTTVIEIMCNQELG 566 (588)
T ss_pred HHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcC-CCCCcEEEEEEeccccC
Confidence 00 00124699999999999999997 5668888888777542 23689999999976553
No 70
>PRK12474 hypothetical protein; Provisional
Probab=99.68 E-value=1.4e-16 Score=170.09 Aligned_cols=150 Identities=19% Similarity=0.204 Sum_probs=107.2
Q ss_pred CCHHHHHHHHhcCCCCCc--cCCCCCcc-----ccc---CCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928 157 VPARAVMSELFGKATGCC--RGQGGSMH-----MFS---KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 226 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~~--~G~ggs~h-----~~~---~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~ 226 (434)
+++..++.++....++.. ..++|+.. ++. +...+.+..|+||+++|.|+|+++| .|++.
T Consensus 341 i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~gsmG~glpaAiGa~lA-----------~p~r~ 409 (518)
T PRK12474 341 LNSLGVAQLIAHRTPDQAIYADEALTSGLFFDMSYDRARPHTHLPLTGGSIGQGLPLAAGAAVA-----------APDRK 409 (518)
T ss_pred cCHHHHHHHHHHHCCCCeEEEECCCcCHHHHHHhhcccCCCCEEccCCCccCccHHHHHHHHHH-----------CCCCc
Confidence 566777777766544332 23333211 111 1222334459999999999999999 78999
Q ss_pred EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccc---------cc--------cccCchhhhccccCCC
Q 013928 227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH---------LR--------ATSDPQIYKKGPAFGM 288 (434)
Q Consensus 227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~---------~~--------~~~~~d~~~~a~a~Gi 288 (434)
|||++|||+|++. .++|.||.+++||+++||.||+ |++-... .. ..+++||.+++++||+
T Consensus 410 vv~i~GDG~f~m~--~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~ 487 (518)
T PRK12474 410 VVCPQGDGGAAYT--MQALWTMARENLDVTVVIFANRSYAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGV 487 (518)
T ss_pred EEEEEcCchhcch--HHHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHCCC
Confidence 9999999999997 7999999999999888888886 5432100 00 0113589999999999
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928 289 PGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 289 ~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t 325 (434)
++.+|+. +.++..++++|+ +.++|+|||+.+
T Consensus 488 ~~~rv~~--~~eL~~al~~a~----~~~~p~liev~~ 518 (518)
T PRK12474 488 EASRATT--AEEFSAQYAAAM----AQRGPRLIEAMI 518 (518)
T ss_pred eEEEeCC--HHHHHHHHHHHH----cCCCCEEEEEEC
Confidence 9999985 567777666654 568999999964
No 71
>PRK07586 hypothetical protein; Validated
Probab=99.68 E-value=1e-16 Score=170.90 Aligned_cols=150 Identities=22% Similarity=0.222 Sum_probs=106.4
Q ss_pred CCHHHHHHHHhcCCCCCc--cCCCCCccc-----c---cCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928 157 VPARAVMSELFGKATGCC--RGQGGSMHM-----F---SKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 226 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~~--~G~ggs~h~-----~---~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~ 226 (434)
+++..++.++....++.. ..++|+..+ + .+..-+.+..|+||+++|.|+|+++| .|++.
T Consensus 337 i~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~lA-----------~p~r~ 405 (514)
T PRK07586 337 LTPEAIAQVIAALLPENAIVVDESITSGRGFFPATAGAAPHDWLTLTGGAIGQGLPLATGAAVA-----------CPDRK 405 (514)
T ss_pred cCHHHHHHHHHHhCCCCeEEEeCCCcCHHHHHHhccccCCCCEEccCCcccccHHHHHHHHHHh-----------CCCCe
Confidence 566777777766555432 233343211 1 11222334458999999999999999 68899
Q ss_pred EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccc-----c-----------c-cccCchhhhccccCCC
Q 013928 227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH-----L-----------R-ATSDPQIYKKGPAFGM 288 (434)
Q Consensus 227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~-----~-----------~-~~~~~d~~~~a~a~Gi 288 (434)
|||++|||+|++. .++|.+|.+++||+++||.||+ |++-... . . ..+.+|+.+++++||+
T Consensus 406 Vv~i~GDGsf~m~--~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~ 483 (514)
T PRK07586 406 VLALQGDGSAMYT--IQALWTQARENLDVTTVIFANRAYAILRGELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGV 483 (514)
T ss_pred EEEEEechHHHhH--HHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCC
Confidence 9999999999987 7999999999999888877775 5532100 0 0 0124689999999999
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928 289 PGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 289 ~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t 325 (434)
++.+|+. +.++.+++++|+ +.++|+|||+.+
T Consensus 484 ~~~~V~~--~~el~~al~~a~----~~~~p~liev~~ 514 (514)
T PRK07586 484 PARRVTT--AEEFADALAAAL----AEPGPHLIEAVV 514 (514)
T ss_pred cEEEeCC--HHHHHHHHHHHH----cCCCCEEEEEEC
Confidence 9999974 567766655554 567999999963
No 72
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.68 E-value=1.1e-16 Score=173.36 Aligned_cols=122 Identities=23% Similarity=0.190 Sum_probs=98.2
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~ 269 (434)
.+++|+||+++|.|+|+++| .+++.|||++|||+|++. .++|.+|.++++|+++||.||+ |++-..
T Consensus 415 ~~~~G~mG~glpaAiGa~la-----------~p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~i~~ 481 (591)
T PRK11269 415 CGQAGPLGWTIPAALGVRAA-----------DPDRNVVALSGDYDFQFL--IEELAVGAQFNLPYIHVLVNNAYLGLIRQ 481 (591)
T ss_pred CCccccccchhhhHHhhhhh-----------CCCCcEEEEEccchhhcC--HHHHHHHHHhCCCeEEEEEeCCchhHHHH
Confidence 45689999999999999999 678999999999999987 7899999999999888888886 543211
Q ss_pred ccc----c----c------------cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 270 HLR----A----T------------SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 270 ~~~----~----~------------~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
.+. . . +++||.+++++||+++.+|+ +++++..++++|++...+.++|+|||+.+.+
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 482 AQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred HHHHhccCccceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 000 0 0 23789999999999999997 5668888887777544346899999999854
No 73
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.68 E-value=1.2e-16 Score=172.60 Aligned_cols=154 Identities=22% Similarity=0.361 Sum_probs=113.0
Q ss_pred CCHHHHHHHHhcCCCCCc--cCCCCCc-----ccc--cCCC--cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928 157 VPARAVMSELFGKATGCC--RGQGGSM-----HMF--SKEH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~~--~G~ggs~-----h~~--~~~~--~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~ 225 (434)
+.+..++.++....++.+ ..+.|.. +++ ..+. ...+++|+||+++|+|+|+++| .|++
T Consensus 372 i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la-----------~p~~ 440 (574)
T PRK07979 372 IKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMA-----------LPEE 440 (574)
T ss_pred cCHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhhHHHHHHHHHHh-----------CCCC
Confidence 667778887776554432 2333321 111 1112 2346679999999999999999 7889
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccc-----------c--ccCchhhhccccCCCcEEE
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------A--TSDPQIYKKGPAFGMPGFH 292 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~-----------~--~~~~d~~~~a~a~Gi~~~~ 292 (434)
.|||++|||+|++. .++|.+|.+++||+++||.||+ +++..... . ...+||.+++++||+++++
T Consensus 441 ~vv~i~GDG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~-~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~~ 517 (574)
T PRK07979 441 TVVCVTGDGSIQMN--IQELSTALQYELPVLVLNLNNR-YLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQ 517 (574)
T ss_pred eEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCc-hhhHHHHHHHHhcCCccccccCCCCCCHHHHHHHCCCEEEE
Confidence 99999999999987 7999999999999888888886 33332110 0 1247999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 293 VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
|+ ++.++..++++|++..+ .++|+|||+.+.+
T Consensus 518 v~--~~~eL~~al~~a~~~~~-~~~p~lIeV~i~~ 549 (574)
T PRK07979 518 IS--HPDELESKLSEALEQVR-NNRLVFVDVTVDG 549 (574)
T ss_pred EC--CHHHHHHHHHHHHhccC-CCCcEEEEEEECC
Confidence 97 56688887777765432 3789999999864
No 74
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.67 E-value=1.5e-16 Score=171.93 Aligned_cols=122 Identities=23% Similarity=0.232 Sum_probs=97.8
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~ 270 (434)
.+++|+||+++|.|+|+++| .+++.|||++|||+|+++ .++|.+|++++||+++||.||+ +++...
T Consensus 426 ~~~~g~mG~~lpaaiGa~la-----------~p~~~Vv~i~GDG~f~m~--~~eL~Tavr~~lpvi~vV~NN~-~yg~i~ 491 (579)
T TIGR03457 426 PMSFGNCGYAFPTIIGAKIA-----------APDRPVVAYAGDGAWGMS--MNEIMTAVRHDIPVTAVVFRNR-QWGAEK 491 (579)
T ss_pred CCccccccchHHHHHhhhhh-----------CCCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECc-chHHHH
Confidence 45679999999999999999 688999999999999997 7999999999999888888776 333221
Q ss_pred cc------------cccC-chhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 013928 271 LR------------ATSD-PQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (434)
Q Consensus 271 ~~------------~~~~-~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~ 329 (434)
.. .... +|+.+++++||+++.+|+ ++.++..++++|++.. ..++|+|||+.+.+..
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~-~~~~p~lieV~v~~~~ 560 (579)
T TIGR03457 492 KNQVDFYNNRFVGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQ-AEGKTTVIEIVCTREL 560 (579)
T ss_pred HHHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhC-CCCCcEEEEEEeCCCc
Confidence 10 0112 599999999999999997 5678888888877543 3468999999986533
No 75
>PRK07524 hypothetical protein; Provisional
Probab=99.67 E-value=9.9e-17 Score=171.77 Aligned_cols=121 Identities=24% Similarity=0.337 Sum_probs=98.4
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCcc-
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGM- 268 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~- 268 (434)
.+++|+||+++|.|+|+++| .++++|||++|||+|+++ .++|.+|+++++|+++||.|| +|++..
T Consensus 403 ~~~~g~mG~~lp~aiGa~lA-----------~p~~~vv~i~GDG~f~~~--~~el~ta~~~~lpi~~vV~NN~~~g~i~~ 469 (535)
T PRK07524 403 STGYGTLGYGLPAAIGAALG-----------APERPVVCLVGDGGLQFT--LPELASAVEADLPLIVLLWNNDGYGEIRR 469 (535)
T ss_pred CCCcccccchHHHHHHHHHh-----------CCCCcEEEEEcchHHhhh--HHHHHHHHHhCCCeEEEEEECCchHHHHH
Confidence 45679999999999999999 789999999999999987 678999999999998888888 555321
Q ss_pred --------cccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 013928 269 --------SHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330 (434)
Q Consensus 269 --------~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~g 330 (434)
+.......+|+.+++++||+++++|+ ++.++.+++++++ +.++|+|||++++|+.+
T Consensus 470 ~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~~~~ 533 (535)
T PRK07524 470 YMVARDIEPVGVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAF----ARPGPTLIEVDQACWFA 533 (535)
T ss_pred HHHHhcCCccccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEECCcccc
Confidence 00111235789999999999999997 6667777666554 56899999999999876
No 76
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.67 E-value=1.5e-16 Score=173.14 Aligned_cols=152 Identities=21% Similarity=0.312 Sum_probs=111.6
Q ss_pred CCCHHHHHHHHhcCCCCCc-cCCCCCcccc------cCC--CcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928 156 GVPARAVMSELFGKATGCC-RGQGGSMHMF------SKE--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 226 (434)
Q Consensus 156 G~~~~~i~~el~g~~~g~~-~G~ggs~h~~------~~~--~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~ 226 (434)
++.+..++.++....++.. ..+.|...++ ..+ ....+++|+||+++|.|+|+++| .|++.
T Consensus 386 ~l~~~~v~~~l~~~~~d~i~~~D~G~~~~~~~~~~~~~p~~~~~s~~~g~mG~glpaAiGA~lA-----------~p~r~ 454 (616)
T PRK07418 386 EIYPQEVLLAVRDLAPDAYYTTDVGQHQMWAAQFLRNGPRRWISSAGLGTMGFGMPAAMGVKVA-----------LPDEE 454 (616)
T ss_pred CcCHHHHHHHHHhhCCCcEEEECChHHHHHHHHhhhcCCCeEEcCCCccccccHHHHHHHHHHh-----------CCCCc
Confidence 3677778888777655421 2344432111 111 22245789999999999999999 78999
Q ss_pred EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccc--------------ccCchhhhccccCCCcEEE
Q 013928 227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA--------------TSDPQIYKKGPAFGMPGFH 292 (434)
Q Consensus 227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~--------------~~~~d~~~~a~a~Gi~~~~ 292 (434)
|||++|||+|++. .++|.+|++++||+++||.||+ +++.....| ...+|+.+++++||+++++
T Consensus 455 Vv~i~GDG~f~m~--~~eL~Ta~r~~lpvi~vV~NN~-~~g~i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~ 531 (616)
T PRK07418 455 VICIAGDASFLMN--IQELGTLAQYGINVKTVIINNG-WQGMVRQWQESFYGERYSASNMEPGMPDFVKLAEAFGVKGMV 531 (616)
T ss_pred EEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEECC-cchHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHCCCeEEE
Confidence 9999999999986 7899999999999988888886 343322111 0247899999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 293 VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
|+ ++.++.+++++|+ +.++|+|||+.+.+
T Consensus 532 V~--~~~el~~al~~a~----~~~~p~lIeV~i~~ 560 (616)
T PRK07418 532 IS--ERDQLKDAIAEAL----AHDGPVLIDVHVRR 560 (616)
T ss_pred eC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 98 5567777666554 46789999999864
No 77
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.67 E-value=1.9e-16 Score=171.04 Aligned_cols=151 Identities=22% Similarity=0.365 Sum_probs=110.5
Q ss_pred CCHHHHHHHHhcCCCCCc--cCCCCCccc-----cc--CCC--cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928 157 VPARAVMSELFGKATGCC--RGQGGSMHM-----FS--KEH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~~--~G~ggs~h~-----~~--~~~--~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~ 225 (434)
+++..++.++....++.. ..++|+... +. .+. ...+++|+||+++|.|+|+++| .+++
T Consensus 373 l~~~~~~~~l~~~l~~d~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA-----------~p~~ 441 (570)
T PRK06725 373 LKPQHVINLVSELTNGEAIVTTEVGQHQMWAAHFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLA-----------KEEE 441 (570)
T ss_pred cCHHHHHHHHHhhCCCCcEEEeCCcHHHHHHHHhccccCCCeEEccCCcccccchhhHHHhhHhh-----------cCCC
Confidence 667778887777654332 233343211 11 112 2245679999999999999999 6889
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccc------------cccCchhhhccccCCCcEEEE
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR------------ATSDPQIYKKGPAFGMPGFHV 293 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~------------~~~~~d~~~~a~a~Gi~~~~V 293 (434)
+|||++|||+|+++ .++|.+|.++++|+++||.||+ +++..... ...++|+.+++++||+++.+|
T Consensus 442 ~vv~i~GDG~f~~~--~~el~Ta~~~~lpi~~vV~NN~-~~~~~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 518 (570)
T PRK06725 442 LVICIAGDASFQMN--IQELQTIAENNIPVKVFIINNK-FLGMVRQWQEMFYENRLSESKIGSPDFVKVAEAYGVKGLRA 518 (570)
T ss_pred eEEEEEecchhhcc--HHHHHHHHHhCCCeEEEEEECC-ccHHHHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEe
Confidence 99999999999887 6899999999999999998886 33322111 112578999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 294 dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
+ ++.++..+++++ ++.++|+|||+.+.+
T Consensus 519 ~--~~~~l~~al~~a----~~~~~p~liev~id~ 546 (570)
T PRK06725 519 T--NSTEAKQVMLEA----FAHEGPVVVDFCVEE 546 (570)
T ss_pred C--CHHHHHHHHHHH----HhCCCCEEEEEEeCC
Confidence 6 566776655555 456899999999854
No 78
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.67 E-value=1.5e-16 Score=172.53 Aligned_cols=151 Identities=19% Similarity=0.362 Sum_probs=110.3
Q ss_pred CCHHHHHHHHhcCCCC-Cc--cCCCCCc------ccc-cCCC--cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCC
Q 013928 157 VPARAVMSELFGKATG-CC--RGQGGSM------HMF-SKEH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g-~~--~G~ggs~------h~~-~~~~--~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d 224 (434)
+.+..++.++....++ .+ ..+.|.. ++. ..+. ...+++|+||+++|.|+|+++| .|+
T Consensus 380 l~~~~~~~~l~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA-----------~p~ 448 (595)
T PRK09107 380 IMPQYAIQRLYELTKGRDTYITTEVGQHQMWAAQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIA-----------HPD 448 (595)
T ss_pred cCHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCchhhhhhHHHHHHHHHh-----------CCC
Confidence 5666777777665532 21 2334421 111 1122 2245679999999999999999 789
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccc-----------c--ccCchhhhccccCCCcEE
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------A--TSDPQIYKKGPAFGMPGF 291 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~-----------~--~~~~d~~~~a~a~Gi~~~ 291 (434)
+.|||++|||+|++. .++|.||+++++|+++||.||+ +++..... . ...+||.+++++||++++
T Consensus 449 r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvi~vV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~ 525 (595)
T PRK09107 449 ALVIDIAGDASIQMC--IQEMSTAVQYNLPVKIFILNNQ-YMGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAYGAVGI 525 (595)
T ss_pred CeEEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEeCC-ccHHHHHHHHHHhCCccccccCCCCCCHHHHHHHCCCeEE
Confidence 999999999999987 7899999999999999998887 44432210 0 124789999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 292 ~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
+|+ ++.++.+++++|+ ..++|+|||+.+.+
T Consensus 526 ~v~--~~~el~~al~~a~----~~~~p~lIeV~i~~ 555 (595)
T PRK09107 526 RCE--KPGDLDDAIQEMI----DVDKPVIFDCRVAN 555 (595)
T ss_pred EEC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 997 4567777666655 45799999999864
No 79
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.67 E-value=3.5e-16 Score=167.44 Aligned_cols=150 Identities=22% Similarity=0.282 Sum_probs=108.0
Q ss_pred CCHHHHHHHHhcCCCCCc--cCCCCCc-----cccc---CCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928 157 VPARAVMSELFGKATGCC--RGQGGSM-----HMFS---KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 226 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~~--~G~ggs~-----h~~~---~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~ 226 (434)
+++..++.++....++.. ..+.|+. +++. +...+.+.+|+||+++|.|+|+++| .++++
T Consensus 359 l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la-----------~p~~~ 427 (530)
T PRK07092 359 LSVAFVLQTLAALRPADAIVVEEAPSTRPAMQEHLPMRRQGSFYTMASGGLGYGLPAAVGVALA-----------QPGRR 427 (530)
T ss_pred cCHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHhcCcCCCCceEccCCCcccchHHHHHHHHHh-----------CCCCe
Confidence 556677777766655432 2233321 1111 1122334468999999999999999 67889
Q ss_pred EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc----------ccccccCchhhhccccCCCcEEEEeC
Q 013928 227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS----------HLRATSDPQIYKKGPAFGMPGFHVDG 295 (434)
Q Consensus 227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~----------~~~~~~~~d~~~~a~a~Gi~~~~VdG 295 (434)
|||++|||+|+++ .++|++|.++++|+++||.||+ |++... ........|+.+++++||+++++|+.
T Consensus 428 vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~ 505 (530)
T PRK07092 428 VIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRVSD 505 (530)
T ss_pred EEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEeCC
Confidence 9999999999998 6999999999999988888887 765211 11112357899999999999999985
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928 296 MDVLKVREVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 296 ~D~~av~~a~~~Al~~ar~~~gP~lIev~t 325 (434)
+.++.+ |++.+++.++|+|||+.+
T Consensus 506 --~~~l~~----al~~a~~~~~p~liev~~ 529 (530)
T PRK07092 506 --AAELAD----ALARALAADGPVLVEVEV 529 (530)
T ss_pred --HHHHHH----HHHHHHhCCCCEEEEEEc
Confidence 456655 444555678999999986
No 80
>PRK05858 hypothetical protein; Provisional
Probab=99.66 E-value=2.7e-16 Score=168.84 Aligned_cols=151 Identities=21% Similarity=0.180 Sum_probs=109.8
Q ss_pred CCHHHHHHHHhcCCCCCc--cCCCCCccc-----c---cCC-CcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928 157 VPARAVMSELFGKATGCC--RGQGGSMHM-----F---SKE-HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~~--~G~ggs~h~-----~---~~~-~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~ 225 (434)
+.+..++.++....++.. ..+.|.... + .+. +...+++|+||+++|.|+|+++| .+++
T Consensus 358 l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la-----------~p~r 426 (542)
T PRK05858 358 IHPMRVYGELAPLLDRDAIVIGDGGDFVSYAGRYIDPYRPGCWLDPGPFGCLGTGPGYALAARLA-----------RPSR 426 (542)
T ss_pred cCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHHccccCCCCEEeCCCccccccchhHHHHHHHh-----------CCCC
Confidence 566667777666555432 233332111 1 111 12234679999999999999999 6889
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccc------------ccCchhhhccccCCCcEEEE
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------------TSDPQIYKKGPAFGMPGFHV 293 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~------------~~~~d~~~~a~a~Gi~~~~V 293 (434)
.|||++|||+|++. .++|.+|.++++|+++||.||+ +++.....+ .+++||.+++++||+++.+|
T Consensus 427 ~vv~i~GDG~f~~~--~~eL~Ta~~~~lpi~ivV~NN~-~y~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 503 (542)
T PRK05858 427 QVVLLQGDGAFGFS--LMDVDTLVRHNLPVVSVIGNNG-IWGLEKHPMEALYGYDVAADLRPGTRYDEVVRALGGHGELV 503 (542)
T ss_pred cEEEEEcCchhcCc--HHHHHHHHHcCCCEEEEEEeCC-chhhHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEe
Confidence 99999999999987 7899999999999888888875 343322111 13579999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 294 dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
+. +.++.+++++|+ +.++|+|||+.+.+
T Consensus 504 ~~--~~eL~~al~~a~----~~~~p~lIev~~~~ 531 (542)
T PRK05858 504 TV--PAELGPALERAF----ASGVPYLVNVLTDP 531 (542)
T ss_pred CC--HHHHHHHHHHHH----hCCCcEEEEEEECC
Confidence 84 557777666665 46899999999854
No 81
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.66 E-value=3.8e-16 Score=167.40 Aligned_cols=118 Identities=24% Similarity=0.310 Sum_probs=94.8
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~ 270 (434)
..++++||+++|.|+|+++| .+++.|||++|||+|++. .++|.||.++++|+++||.||+ +++...
T Consensus 404 ~~~~g~mG~~lpaaiGa~la-----------~~~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpi~ivV~NN~-~y~~~~ 469 (539)
T TIGR02418 404 SNGMQTLGVALPWAIGAALV-----------RPNTKVVSVSGDGGFLFS--SMELETAVRLKLNIVHIIWNDN-GYNMVE 469 (539)
T ss_pred CCCccccccHHHHHHHHHHh-----------CCCCcEEEEEcchhhhch--HHHHHHHHHhCCCeEEEEEECC-cchHHH
Confidence 45679999999999999999 678899999999999987 7899999999999888888775 333221
Q ss_pred cc-----------cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928 271 LR-----------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (434)
Q Consensus 271 ~~-----------~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~ 328 (434)
.. ....+|+.+++++||+++.+|+. +.++.+++++|+ +.++|+|||+.+.+.
T Consensus 470 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~--~~eL~~al~~a~----~~~~p~lIev~v~~~ 532 (539)
T TIGR02418 470 FQEEMKYQRSSGVDFGPIDFVKYAESFGAKGLRVES--PDQLEPTLRQAM----EVEGPVVVDIPVDYS 532 (539)
T ss_pred HHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHH----hCCCCEEEEEEecCc
Confidence 10 11357999999999999999985 557777666554 467999999998643
No 82
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.66 E-value=2.1e-16 Score=170.71 Aligned_cols=152 Identities=21% Similarity=0.351 Sum_probs=110.1
Q ss_pred CCHHHHHHHHhcCCCCCc--cCCCCCc-----ccc--cCCCc--ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928 157 VPARAVMSELFGKATGCC--RGQGGSM-----HMF--SKEHN--LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~~--~G~ggs~-----h~~--~~~~~--~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~ 225 (434)
+++..++.++....++.. ..+.|.. +++ ..+.. ..+++|+||+++|+|+|+++| .|++
T Consensus 372 i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~~ 440 (572)
T PRK08979 372 IKPQQVIETLYKLTNGDAYVASDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFA-----------MPDE 440 (572)
T ss_pred cCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCcccccchhhHHHhhhhh-----------CCCC
Confidence 567777777777655432 2333321 111 11222 245679999999999999999 7889
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccc-------------ccCchhhhccccCCCcEEE
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGFH 292 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~-------------~~~~d~~~~a~a~Gi~~~~ 292 (434)
.|||++|||+|++. .++|.||.++++|+++||.||+ +++.....| ...+||.+++++||+++.+
T Consensus 441 ~vv~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~ 517 (572)
T PRK08979 441 TVVCVTGDGSIQMN--IQELSTALQYDIPVKIINLNNR-FLGMVKQWQDMIYQGRHSHSYMDSVPDFAKIAEAYGHVGIR 517 (572)
T ss_pred eEEEEEcchHhhcc--HHHHHHHHHcCCCeEEEEEeCC-ccHHHHHHHHHHhCCcccccCCCCCCCHHHHHHHCCCeEEE
Confidence 99999999999997 7899999999999888888876 333322110 1247899999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 293 VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
|+. +.++..++++|++ ..++|+|||+.+.+
T Consensus 518 v~~--~~eL~~al~~a~~---~~~~p~lIev~i~~ 547 (572)
T PRK08979 518 ISD--PDELESGLEKALA---MKDRLVFVDINVDE 547 (572)
T ss_pred ECC--HHHHHHHHHHHHh---cCCCcEEEEEEeCC
Confidence 984 5677776666553 13789999999864
No 83
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.66 E-value=3.3e-16 Score=169.71 Aligned_cols=152 Identities=19% Similarity=0.348 Sum_probs=110.5
Q ss_pred CCHHHHHHHHhcCCCCCc--cCCCCCc-----ccc--cCCC--cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928 157 VPARAVMSELFGKATGCC--RGQGGSM-----HMF--SKEH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~~--~G~ggs~-----h~~--~~~~--~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~ 225 (434)
+.+..++.++....++.+ ..++|.. +++ ..+. ...+++|+||+++|.|+|+++| .+++
T Consensus 388 i~~~~~~~~l~~~l~~d~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA-----------~p~r 456 (587)
T PRK06965 388 IKPQYVVEKLWELTDGDAFVCSDVGQHQMWAAQFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMA-----------HPDD 456 (587)
T ss_pred cCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHh-----------CCCC
Confidence 566677777766554432 1233321 111 1122 2246779999999999999999 6889
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccc-------------ccCchhhhccccCCCcEEE
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGFH 292 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~-------------~~~~d~~~~a~a~Gi~~~~ 292 (434)
.|||++|||+|++. .++|.||.++++|+++||.||+ +++.....| ...+|+.+++++||+++.+
T Consensus 457 ~Vv~i~GDGsf~m~--~~eL~Ta~r~~lpviivV~NN~-~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~ 533 (587)
T PRK06965 457 DVVCITGEGSIQMC--IQELSTCLQYDTPVKIISLNNR-YLGMVRQWQEIEYSKRYSHSYMDALPDFVKLAEAYGHVGMR 533 (587)
T ss_pred cEEEEEcchhhhcC--HHHHHHHHHcCCCeEEEEEECC-cchHHHHHHHHhcCCCccccCCCCCCCHHHHHHHCCCEEEE
Confidence 99999999999997 7999999999999988888887 443322110 1247999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 293 VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
|+ +..++.+++++|++. .++|+|||+.+.+
T Consensus 534 v~--~~~eL~~al~~a~~~---~~~p~lieV~i~~ 563 (587)
T PRK06965 534 IE--KTSDVEPALREALRL---KDRTVFLDFQTDP 563 (587)
T ss_pred EC--CHHHHHHHHHHHHhc---CCCcEEEEEEecc
Confidence 97 456887777776641 3689999999854
No 84
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.66 E-value=3.8e-16 Score=168.62 Aligned_cols=122 Identities=25% Similarity=0.307 Sum_probs=101.8
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~ 269 (434)
.+++|+||+++|.|+|+++| .|+++|||++|||+|+++...++|++|.++++|+++||.|| +|++...
T Consensus 426 ~~~~gsmG~~lp~aiGa~la-----------~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~ 494 (569)
T PRK08327 426 DGSAGGLGWALGAALGAKLA-----------TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKE 494 (569)
T ss_pred CCCCCCCCcchHHHHHHhhc-----------CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchh
Confidence 45689999999999999999 78999999999999998854567999999999988888888 5665311
Q ss_pred c-----------------cccc-cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928 270 H-----------------LRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 270 ~-----------------~~~~-~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t 325 (434)
. .... +.+|+.+++++||+++.+|+ ++.++.+++++|++.++.+++|+|||+.+
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 495 AVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred HHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 0 0011 35689999999999999998 77899999999998777778999999986
No 85
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.65 E-value=4.9e-16 Score=167.48 Aligned_cols=153 Identities=24% Similarity=0.384 Sum_probs=109.5
Q ss_pred CCHHHHHHHHhcCCCCCc--cCCCCCc-----cccc--CCC--cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928 157 VPARAVMSELFGKATGCC--RGQGGSM-----HMFS--KEH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~~--~G~ggs~-----h~~~--~~~--~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~ 225 (434)
+.+..++.++....++.+ ..+.|.. +++. .+. ...+++|+||+++|.|+|+++| .+++
T Consensus 365 i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la-----------~p~~ 433 (563)
T PRK08527 365 LKPQWVIERVGELLGDDAIISTDVGQHQMWVAQFYPFNYPRQLATSGGLGTMGYGLPAALGAKLA-----------VPDK 433 (563)
T ss_pred cCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHh-----------CCCC
Confidence 455667777766655432 2333421 1111 112 2245679999999999999999 6788
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccc-------------cccCchhhhccccCCCcEEE
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-------------ATSDPQIYKKGPAFGMPGFH 292 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~-------------~~~~~d~~~~a~a~Gi~~~~ 292 (434)
.|||++|||+|+++ ..+|.+|.+++||+++||.||+ +++..... ....+|+.+++++||+++++
T Consensus 434 ~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~-~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~ 510 (563)
T PRK08527 434 VVINFTGDGSILMN--IQELMTAVEYKIPVINIILNNN-FLGMVRQWQTFFYEERYSETDLSTQPDFVKLAESFGGIGFR 510 (563)
T ss_pred cEEEEecCchhccc--HHHHHHHHHhCCCeEEEEEECC-cchhHHHHHHhhcCCceeeccCCCCCCHHHHHHHCCCeEEE
Confidence 99999999999987 6789999999999888888876 33322111 01246899999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 013928 293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (434)
Q Consensus 293 VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~ 329 (434)
|+. +.++.+++++|+ ..++|+|||+.+.+..
T Consensus 511 v~~--~~el~~al~~a~----~~~~p~lieV~v~~~~ 541 (563)
T PRK08527 511 VTT--KEEFDKALKEAL----ESDKVALIDVKIDRFE 541 (563)
T ss_pred ECC--HHHHHHHHHHHH----hCCCCEEEEEEECCcc
Confidence 974 557766665554 4689999999997633
No 86
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.65 E-value=5.5e-16 Score=167.65 Aligned_cols=118 Identities=27% Similarity=0.344 Sum_probs=96.1
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~ 270 (434)
.+.+|+||+++|.|+|+++| .++++|||++|||+|+++ ..+|.+|+++++|+++||.||+ +++...
T Consensus 404 s~~~gsmG~~~paAiGa~la-----------~p~~~vv~i~GDGsf~~~--~~el~Ta~~~~lpv~~vV~NN~-~~g~i~ 469 (578)
T PRK06546 404 SFRHGSMANALPHAIGAQLA-----------DPGRQVISMSGDGGLSML--LGELLTVKLYDLPVKVVVFNNS-TLGMVK 469 (578)
T ss_pred cCCcccccchhHHHHHHHHh-----------CCCCcEEEEEcCchHhhh--HHHHHHHHHhCCCeEEEEEECC-ccccHH
Confidence 35679999999999999999 788999999999999986 6899999999999999988886 333321
Q ss_pred c-----------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928 271 L-----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (434)
Q Consensus 271 ~-----------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~ 328 (434)
. .....+|+.+++++||+++.+|+ ++.++.+++++++ +.++|+|||+.+.+.
T Consensus 470 ~~q~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIev~~~~~ 532 (578)
T PRK06546 470 LEMLVDGLPDFGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAF----AHPGPALVDVVTDPN 532 (578)
T ss_pred HHHHhcCCCcccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCCC
Confidence 0 01235799999999999999997 5678877666655 468999999998543
No 87
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.65 E-value=4e-16 Score=167.36 Aligned_cols=151 Identities=15% Similarity=0.100 Sum_probs=107.9
Q ss_pred CCHHHHHHHHhcCCCCCc--cCCCCCcccc------cCCCc--ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928 157 VPARAVMSELFGKATGCC--RGQGGSMHMF------SKEHN--LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 226 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~~--~G~ggs~h~~------~~~~~--~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~ 226 (434)
+++..++.++....++.+ ..+.|...+. ..+.. ..+.+|+||+++|.|+|+++| .|+++
T Consensus 356 l~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~~~ 424 (539)
T TIGR03393 356 LSQENFWQTLQTFLRPGDIILADQGTSAFGAADLRLPADVNFIVQPLWGSIGYTLPAAFGAQTA-----------CPNRR 424 (539)
T ss_pred cCHHHHHHHHHHhcCCCCEEEEccCchhhhhhhccCCCCCeEEechhhhhhhhHHHHHHHHHhc-----------CCCCC
Confidence 667777777776555332 2333322111 11112 246679999999999999999 78899
Q ss_pred EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccccc------ccccCchhhhccccCCCc----EEEEeC
Q 013928 227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL------RATSDPQIYKKGPAFGMP----GFHVDG 295 (434)
Q Consensus 227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~------~~~~~~d~~~~a~a~Gi~----~~~VdG 295 (434)
|||++|||+|++. .++|.+|+++++|+++||.||+ |++-.... .....+|+.+++++||++ +.+|+.
T Consensus 425 vv~i~GDG~f~m~--~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~~ 502 (539)
T TIGR03393 425 VILLIGDGSAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRVSE 502 (539)
T ss_pred eEEEEcCcHHHhH--HHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEecc
Confidence 9999999999987 7999999999999888887775 54321110 112347899999999996 789874
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 296 MDVLKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 296 ~D~~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
..++.++++++ .+.++|+|||+.+.
T Consensus 503 --~~el~~al~~a----~~~~~p~liev~i~ 527 (539)
T TIGR03393 503 --AEQLADVLEKV----AAHERLSLIEVVLP 527 (539)
T ss_pred --HHHHHHHHHHH----hccCCeEEEEEEcC
Confidence 55776655554 45689999999874
No 88
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.64 E-value=5.5e-16 Score=167.50 Aligned_cols=153 Identities=20% Similarity=0.311 Sum_probs=110.1
Q ss_pred CCHHHHHHHHhcCCCCCc--cCCCCCcc-----cc--cCC--CcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928 157 VPARAVMSELFGKATGCC--RGQGGSMH-----MF--SKE--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~~--~G~ggs~h-----~~--~~~--~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~ 225 (434)
+++..++.++....++.. ..+.|... ++ ..+ +...+++|+||+++|.|+|+++| .+++
T Consensus 374 l~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la-----------~p~r 442 (574)
T PRK06466 374 IKPQQVVETLYEVTNGDAYVTSDVGQHQMFAAQYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLA-----------FPDQ 442 (574)
T ss_pred cCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhccccCCCcEEcCCCcchhhchHHHHHHHHHh-----------CCCC
Confidence 567778887777654432 22333211 11 111 22346779999999999999999 6889
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccc---------ccc--ccCchhhhccccCCCcEEEE
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH---------LRA--TSDPQIYKKGPAFGMPGFHV 293 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~---------~~~--~~~~d~~~~a~a~Gi~~~~V 293 (434)
.|||++|||+|++. .++|.+|.++++|+++||.||+ |++-... ... ...+||.+++++||+++.+|
T Consensus 443 ~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 520 (574)
T PRK06466 443 DVACVTGEGSIQMN--IQELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGRHSHSYMESLPDFVKLAEAYGHVGIRI 520 (574)
T ss_pred eEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCceeecCCCCCCCHHHHHHHCCCeEEEE
Confidence 99999999999997 7999999999999888888775 4431100 000 12478999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 294 dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
+ ++.++..++++|++. .++|+|||+.+.+
T Consensus 521 ~--~~~el~~al~~a~~~---~~~p~lIev~i~~ 549 (574)
T PRK06466 521 T--DLKDLKPKLEEAFAM---KDRLVFIDIYVDR 549 (574)
T ss_pred C--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 7 456777766666531 2789999999864
No 89
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.64 E-value=4e-16 Score=168.43 Aligned_cols=152 Identities=22% Similarity=0.369 Sum_probs=107.7
Q ss_pred CCHHHHHHHHhcCCCCCc--cCCCCCc------cccc--CC-CcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928 157 VPARAVMSELFGKATGCC--RGQGGSM------HMFS--KE-HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~~--~G~ggs~------h~~~--~~-~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~ 225 (434)
+++..++.++....+... ..+.|.. ++.. +. ....+++|+||+++|.|+|+++| .+++
T Consensus 375 ~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGaala-----------~p~~ 443 (571)
T PRK07710 375 IKPQKAIEMLYEITKGEAIVTTDVGQHQMWAAQYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLA-----------KPDE 443 (571)
T ss_pred cCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHh-----------CCCC
Confidence 566677777766554332 2233321 1111 11 22346679999999999999999 6889
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccc---------c--ccccCchhhhccccCCCcEEEE
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH---------L--RATSDPQIYKKGPAFGMPGFHV 293 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~---------~--~~~~~~d~~~~a~a~Gi~~~~V 293 (434)
.|||++|||+|++. ..+|++|.++++|+++||.||+ |++-... . .....+|+.+++++||+++.+|
T Consensus 444 ~vv~i~GDGsf~m~--~~eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v 521 (571)
T PRK07710 444 TVVAIVGDGGFQMT--LQELSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRI 521 (571)
T ss_pred cEEEEEcchHHhhh--HHHHHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcceeccCCCCCCHHHHHHHCCCeEEEE
Confidence 99999999999986 5679999999999888888775 4432110 0 1113478999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 294 dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
+.. .++..+++ .+...++|+|||+.+.+
T Consensus 522 ~~~--~el~~al~----~a~~~~~p~lieV~vd~ 549 (571)
T PRK07710 522 DDE--LEAKEQLQ----HAIELQEPVVIDCRVLQ 549 (571)
T ss_pred CCH--HHHHHHHH----HHHhCCCCEEEEEEecC
Confidence 864 46655544 45556899999999965
No 90
>PRK08266 hypothetical protein; Provisional
Probab=99.64 E-value=4.7e-16 Score=166.75 Aligned_cols=122 Identities=27% Similarity=0.339 Sum_probs=97.1
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~ 269 (434)
.+.+|+||+++|.|+|++++ .+++.|||++|||+|+++ .++|.+|.+++||+++||.||+ |++...
T Consensus 398 ~~~~GsmG~~lp~aiGa~la-----------~p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~ 464 (542)
T PRK08266 398 CGYQGTLGYGFPTALGAKVA-----------NPDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRR 464 (542)
T ss_pred CCCCcccccHHHHHHHHHHh-----------CCCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 34579999999999999998 688999999999999998 7999999999999888888774 654221
Q ss_pred cc----------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCC
Q 013928 270 HL----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH 331 (434)
Q Consensus 270 ~~----------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gH 331 (434)
.+ .....+|+.+++++||+++.+|+. +.++.++++++ ...++|+|||+.|+|...+
T Consensus 465 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~--~~el~~al~~a----~~~~~p~liev~i~~~~~~ 530 (542)
T PRK08266 465 DQKRRFGGRVVASDLVNPDFVKLAESFGVAAFRVDS--PEELRAALEAA----LAHGGPVLIEVPVPRGSEA 530 (542)
T ss_pred HHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeCC--HHHHHHHHHHH----HhCCCcEEEEEEecCCCCc
Confidence 10 001246899999999999999985 45666655554 4567999999999877544
No 91
>PRK08617 acetolactate synthase; Reviewed
Probab=99.64 E-value=5e-16 Score=166.98 Aligned_cols=118 Identities=23% Similarity=0.294 Sum_probs=95.4
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~ 270 (434)
.+++|+||+++|.|+|+++| .+++.|||++|||+|++. .++|.+|.++++|+++||.||+ ++++..
T Consensus 410 ~~~~g~mG~~lpaaiGa~la-----------~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~-~~~~~~ 475 (552)
T PRK08617 410 SNGMQTLGVALPWAIAAALV-----------RPGKKVVSVSGDGGFLFS--AMELETAVRLKLNIVHIIWNDG-HYNMVE 475 (552)
T ss_pred cCccccccccccHHHhhHhh-----------cCCCcEEEEEechHHhhh--HHHHHHHHHhCCCeEEEEEECC-ccchHH
Confidence 45679999999999999999 688999999999999987 7999999999999888888776 444432
Q ss_pred ccc-----------ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928 271 LRA-----------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (434)
Q Consensus 271 ~~~-----------~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~ 328 (434)
..+ ...+|+.+++++||+++.+|.. +.++.+++++|+ ..++|+|||+.+.+.
T Consensus 476 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~eL~~al~~a~----~~~~p~liev~~~~~ 538 (552)
T PRK08617 476 FQEEMKYGRSSGVDFGPVDFVKYAESFGAKGLRVTS--PDELEPVLREAL----ATDGPVVIDIPVDYS 538 (552)
T ss_pred HHHHhhcCCcccCCCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHH----hCCCcEEEEEEeccc
Confidence 110 1357899999999999999984 557767666554 567899999998653
No 92
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.64 E-value=8.4e-16 Score=166.02 Aligned_cols=118 Identities=22% Similarity=0.282 Sum_probs=94.7
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~ 269 (434)
.+++|+||+++|.|+|+++| .+++.|||++|||+|++. .++|.+|.++++|+++||.||+ |++...
T Consensus 404 ~~~~G~mG~~lpaAiGa~la-----------~p~r~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~ 470 (574)
T PRK09124 404 SFNHGSMANAMPQALGAQAA-----------HPGRQVVALSGDGGFSML--MGDFLSLVQLKLPVKIVVFNNSVLGFVAM 470 (574)
T ss_pred cCCcccccchHHHHHHHHHh-----------CCCCeEEEEecCcHHhcc--HHHHHHHHHhCCCeEEEEEeCCccccHHH
Confidence 36789999999999999999 788999999999999987 7899999999999888777775 554210
Q ss_pred cc-------c--cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 270 HL-------R--ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 270 ~~-------~--~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
.. . ....+|+.+++++||+++.+|+ ++.++..++++|+ ..++|+|||+.+.+
T Consensus 471 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIev~i~~ 531 (574)
T PRK09124 471 EMKAGGYLTDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAF----AHDGPALVDVVTAK 531 (574)
T ss_pred HHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 00 0 1134689999999999999997 4567777666654 46799999999854
No 93
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.64 E-value=8.6e-16 Score=148.40 Aligned_cols=124 Identities=21% Similarity=0.177 Sum_probs=96.1
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCcccc-ccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGM 268 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~ 268 (434)
.+..++||+++|.|+|++++ .|+++|||++|||++ +++ .++|.+|+++++|+++||.||+ |++..
T Consensus 58 ~~~~gsmG~GlpaAiGa~~a-----------~p~r~VV~i~GDG~~~~m~--~~eL~ta~~~~~pv~~vVlNN~~yg~tg 124 (235)
T cd03376 58 FENAAAVASGIEAALKALGR-----------GKDITVVAFAGDGGTADIG--FQALSGAAERGHDILYICYDNEAYMNTG 124 (235)
T ss_pred hcCHHHHHHHHHHHHHHhcc-----------CCCCeEEEEEcCchHHhhH--HHHHHHHHHcCCCeEEEEECCcccccCC
Confidence 34457999999999999887 688999999999995 787 7899999999999999999886 44211
Q ss_pred c-ccc--------------------cccCchhhhccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 269 S-HLR--------------------ATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 269 ~-~~~--------------------~~~~~d~~~~a~a~Gi~~~~-VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
. ... ....+|+.+++++||++++. ++-.++.++.+++++|+ +.++|+|||+.+.
T Consensus 125 ~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~----~~~gP~lIev~~~ 200 (235)
T cd03376 125 IQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKAL----SIEGPAYIHILSP 200 (235)
T ss_pred CCCCCCCCCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHH----hCCCCEEEEEECC
Confidence 1 000 11336899999999999873 55668888888777665 4579999999875
Q ss_pred cCCCC
Q 013928 327 RFRGH 331 (434)
Q Consensus 327 R~~gH 331 (434)
-...|
T Consensus 201 C~~~~ 205 (235)
T cd03376 201 CPTGW 205 (235)
T ss_pred CCCCC
Confidence 54443
No 94
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.64 E-value=5.7e-16 Score=168.15 Aligned_cols=155 Identities=23% Similarity=0.282 Sum_probs=110.5
Q ss_pred CCCHHHHHHHHhcCCCCCc--cCCCCCccc-----cc---C-CCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCC
Q 013928 156 GVPARAVMSELFGKATGCC--RGQGGSMHM-----FS---K-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (434)
Q Consensus 156 G~~~~~i~~el~g~~~g~~--~G~ggs~h~-----~~---~-~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d 224 (434)
++++..++.++....+..+ ..+.|.... +. + .....+++|+||+++|.|+|+++| .|+
T Consensus 365 ~l~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la-----------~p~ 433 (597)
T PRK08273 365 PVNPQRVFWELSPRLPDNAILTADSGSCANWYARDLRMRRGMMASLSGTLATMGPAVPYAIAAKFA-----------HPD 433 (597)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhCCCCCCCeEEecCccccccchHHHHHHHHHh-----------CCC
Confidence 3677778887776555332 233343211 11 1 122346679999999999999999 688
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHc-----CCCeEEEEEcCC-ccCcccc---------c---ccccCchhhhccccC
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALW-----KLPIVFVVENNL-WAIGMSH---------L---RATSDPQIYKKGPAF 286 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~-----~LPvI~VV~NN~-y~is~~~---------~---~~~~~~d~~~~a~a~ 286 (434)
+.|||++|||+|++.. .++|.||.++ ++|+++||.||+ |++-... . ...+..|+.+++++|
T Consensus 434 ~~Vv~i~GDG~f~m~~-~~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~ 512 (597)
T PRK08273 434 RPVIALVGDGAMQMNG-MAELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVMEGDPKFEASQDLPDVPYARFAELL 512 (597)
T ss_pred CcEEEEEcchhHhccc-hHHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHhcCCCcccccccCCCCCHHHHHHHC
Confidence 9999999999998752 3899999999 899988888886 4331100 0 011346899999999
Q ss_pred CCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928 287 GMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (434)
Q Consensus 287 Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~ 328 (434)
|+++++|+ +++++..++++|+ +.++|+|||+.+.+.
T Consensus 513 G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIeV~~~~~ 548 (597)
T PRK08273 513 GLKGIRVD--DPEQLGAAWDEAL----AADRPVVLEVKTDPN 548 (597)
T ss_pred CCEEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEeCCC
Confidence 99999998 4567777666654 468999999998653
No 95
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.64 E-value=1e-15 Score=165.56 Aligned_cols=120 Identities=22% Similarity=0.318 Sum_probs=95.9
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~ 269 (434)
.+.+|+||+++|.|+|+++| .++++||+++|||+|++. .++|.+++++++|+++||.||+ |++...
T Consensus 404 ~~~~gsmG~glpaAiGa~la-----------~p~r~Vv~i~GDGsf~m~--~~eL~Tavr~~lpi~~VV~NN~~yg~i~~ 470 (575)
T TIGR02720 404 SNLFATMGVGVPGAIAAKLN-----------YPDRQVFNLAGDGAFSMT--MQDLLTQVQYHLPVINIVFSNCTYGFIKD 470 (575)
T ss_pred CCCcchhhchHHHHHHHHHh-----------CCCCcEEEEEcccHHHhh--HHHHHHHHHhCCCeEEEEEeCCccHHHHH
Confidence 45679999999999999999 788999999999999997 7899999999999888877665 554210
Q ss_pred c-----c----ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 270 H-----L----RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 270 ~-----~----~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
. . .....+|+.+++++||+++.+|+. ..++.++++++++ . ..++|+|||+.+..
T Consensus 471 ~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v~~--~~el~~al~~a~~-~-~~~~p~liev~i~~ 533 (575)
T TIGR02720 471 EQEDTNQPLIGVDFNDADFAKIAEGVGAVGFRVNK--IEQLPAVFEQAKA-I-KQGKPVLIDAKITG 533 (575)
T ss_pred HHHHhCCCcccccCCCCCHHHHHHHCCCEEEEeCC--HHHHHHHHHHHHh-h-CCCCcEEEEEEeCC
Confidence 0 0 011347899999999999999974 5688777777664 2 45799999999854
No 96
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.64 E-value=7.3e-16 Score=166.91 Aligned_cols=152 Identities=22% Similarity=0.407 Sum_probs=109.4
Q ss_pred CCCHHHHHHHHhcCCCCC-ccCCCCCc-----ccc--cCC-CcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928 156 GVPARAVMSELFGKATGC-CRGQGGSM-----HMF--SKE-HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 226 (434)
Q Consensus 156 G~~~~~i~~el~g~~~g~-~~G~ggs~-----h~~--~~~-~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~ 226 (434)
++++..++.++....++. ...++|.. +++ .+. ....+++|+||+++|.|+|+++| .++++
T Consensus 382 ~l~~~~~~~~l~~~~~d~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGaala-----------~p~~~ 450 (585)
T CHL00099 382 SLSPQEVINEISQLAPDAYFTTDVGQHQMWAAQFLKCKPRKWLSSAGLGTMGYGLPAAIGAQIA-----------HPNEL 450 (585)
T ss_pred CcCHHHHHHHHHhhCCCeEEEECCcHHHHHHHHhccCCCCcEEcCccccchhhhHHHHHHHHHh-----------CCCCe
Confidence 366677777776654422 12333321 111 111 22246789999999999999999 67899
Q ss_pred EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccc--------------cccCchhhhccccCCCcEEE
Q 013928 227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR--------------ATSDPQIYKKGPAFGMPGFH 292 (434)
Q Consensus 227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~--------------~~~~~d~~~~a~a~Gi~~~~ 292 (434)
|||++|||+|++. .++|.+|.++++|+++||.||+ +++..... ....+|+.+++++||+++++
T Consensus 451 vv~i~GDG~f~m~--~~eL~Ta~~~~l~~~~vV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~ 527 (585)
T CHL00099 451 VICISGDASFQMN--LQELGTIAQYNLPIKIIIINNK-WQGMVRQWQQAFYGERYSHSNMEEGAPDFVKLAEAYGIKGLR 527 (585)
T ss_pred EEEEEcchhhhhh--HHHHHHHHHhCCCeEEEEEECC-cchHHHHHHHHhcCCCcccccCCCCCCCHHHHHHHCCCeEEE
Confidence 9999999999987 7999999999999999998887 33322111 11247899999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 293 VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
|+. ++++.+++++| +..++|+|||+.+..
T Consensus 528 v~~--~~el~~al~~a----~~~~~p~liev~v~~ 556 (585)
T CHL00099 528 IKS--RKDLKSSLKEA----LDYDGPVLIDCQVIE 556 (585)
T ss_pred eCC--HHHHHHHHHHH----HhCCCCEEEEEEECC
Confidence 975 55766655554 456899999999853
No 97
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.64 E-value=6.8e-16 Score=166.33 Aligned_cols=151 Identities=21% Similarity=0.359 Sum_probs=108.5
Q ss_pred CCHHHHHHHHhcCCCCCc-cCCCCCc-----cccc--CCCc--ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928 157 VPARAVMSELFGKATGCC-RGQGGSM-----HMFS--KEHN--LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 226 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~~-~G~ggs~-----h~~~--~~~~--~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~ 226 (434)
+.+..++.++....++.. ..+.|.. +++. .+.. ..+++|+||+++|.|+|+++| .+++.
T Consensus 366 l~~~~~~~~l~~~~p~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~~~ 434 (561)
T PRK06048 366 IKPQYVIEQIYELCPDAIIVTEVGQHQMWAAQYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVG-----------KPDKT 434 (561)
T ss_pred cCHHHHHHHHHhhCCCcEEEEcCcHHHHHHHHhcccCCCCeEEeCCCccccccHHHHHHHHHHh-----------CCCCc
Confidence 456667777766554321 2333321 1111 1122 245669999999999999999 67899
Q ss_pred EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccc-----------cc--ccCchhhhccccCCCcEEEE
Q 013928 227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL-----------RA--TSDPQIYKKGPAFGMPGFHV 293 (434)
Q Consensus 227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~-----------~~--~~~~d~~~~a~a~Gi~~~~V 293 (434)
|||++|||+|++. ..+|.+|.++++|+++||.||+ +++.... .. ...+|+.+++++||+++.+|
T Consensus 435 Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~-~y~~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 511 (561)
T PRK06048 435 VIDIAGDGSFQMN--SQELATAVQNDIPVIVAILNNG-YLGMVRQWQELFYDKRYSHTCIKGSVDFVKLAEAYGALGLRV 511 (561)
T ss_pred EEEEEeCchhhcc--HHHHHHHHHcCCCeEEEEEECC-ccHHHHHHHHHHcCCcccccCCCCCCCHHHHHHHCCCeEEEE
Confidence 9999999999997 7999999999999888888776 3332211 01 13578999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 294 dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
+. +.++.+++++|+ ..++|+|||+.+.+
T Consensus 512 ~t--~~el~~al~~a~----~~~~p~liev~~~~ 539 (561)
T PRK06048 512 EK--PSEVRPAIEEAV----ASDRPVVIDFIVEC 539 (561)
T ss_pred CC--HHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 85 457767666654 46799999999864
No 98
>PRK07064 hypothetical protein; Provisional
Probab=99.63 E-value=7.7e-16 Score=165.15 Aligned_cols=118 Identities=25% Similarity=0.320 Sum_probs=93.9
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcc
Q 013928 190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGM 268 (434)
Q Consensus 190 ~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~ 268 (434)
+.+..|+||+++|.|+|+++| .+++.|||++|||+|++. .++|.+|.++++|+++||.||+ |++-.
T Consensus 400 ~~~~~g~mG~~lpaAiGa~lA-----------~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~yg~~~ 466 (544)
T PRK07064 400 VHALGGGIGQGLAMAIGAALA-----------GPGRKTVGLVGDGGLMLN--LGELATAVQENANMVIVLMNDGGYGVIR 466 (544)
T ss_pred eccCCCccccccchhhhhhhh-----------CcCCcEEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEeCChhHHHH
Confidence 444458999999999999999 688999999999999987 7899999999999888887775 54321
Q ss_pred ccc----------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 269 SHL----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 269 ~~~----------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
... .....+|+.+++++||+++.+|+. +.++..++++|+ +.++|+|||+.++
T Consensus 467 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~eL~~al~~a~----~~~~p~lIeV~~~ 528 (544)
T PRK07064 467 NIQDAQYGGRRYYVELHTPDFALLAASLGLPHWRVTS--ADDFEAVLREAL----AKEGPVLVEVDML 528 (544)
T ss_pred HHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeCC--HHHHHHHHHHHH----cCCCCEEEEEEcc
Confidence 100 011357899999999999999974 557777666654 4679999999986
No 99
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.63 E-value=9.7e-16 Score=165.65 Aligned_cols=151 Identities=23% Similarity=0.313 Sum_probs=107.9
Q ss_pred CCHHHHHHHHhcCCCCCc--cCCCCCc-----cccc--C-CCcc--cCCcccccccchhhHHHHHHHHHHHhhhhhcCCC
Q 013928 157 VPARAVMSELFGKATGCC--RGQGGSM-----HMFS--K-EHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~~--~G~ggs~-----h~~~--~-~~~~--~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d 224 (434)
+.+..++.++....++.+ ..++|.. +++. + ...+ ..++++||+++|.|+|+++| .++
T Consensus 387 i~~~~v~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la-----------~~~ 455 (578)
T PRK06112 387 IRPERIMAELQAVLTGDTIVVADASYSSIWVANFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVA-----------RPG 455 (578)
T ss_pred cCHHHHHHHHHHhCCCCCEEEEcccHHHHHHHHhcCccCCCceEECCCCccccccHHHHHHHHHhh-----------CCC
Confidence 556667777766655432 1233321 1111 1 2123 34578999999999999998 678
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccc------------ccCchhhhccccCCCcEEE
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------------TSDPQIYKKGPAFGMPGFH 292 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~------------~~~~d~~~~a~a~Gi~~~~ 292 (434)
++|||++|||+|++. .++|++|.++++|+++||.||+ .++.....+ ...+|+.+++++||+++++
T Consensus 456 ~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~~vv~NN~-~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~ 532 (578)
T PRK06112 456 APVICLVGDGGFAHV--WAELETARRMGVPVTIVVLNNG-ILGFQKHAETVKFGTHTDACHFAAVDHAAIARACGCDGVR 532 (578)
T ss_pred CcEEEEEcchHHHhH--HHHHHHHHHhCCCeEEEEEeCC-ccCCEEeccccccCCccccCcCCCCCHHHHHHHCCCeEEE
Confidence 899999999999875 8999999999999999998886 222221100 1246899999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 293 VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
|+. +.++.++++++ .+.++|+|||+++.+
T Consensus 533 v~~--~~el~~al~~a----~~~~gp~lIev~~~~ 561 (578)
T PRK06112 533 VED--PAELAQALAAA----MAAPGPTLIEVITDP 561 (578)
T ss_pred eCC--HHHHHHHHHHH----HhCCCCEEEEEEcCc
Confidence 984 55766655554 456899999999854
No 100
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.63 E-value=9.9e-16 Score=165.35 Aligned_cols=153 Identities=20% Similarity=0.262 Sum_probs=109.2
Q ss_pred CCHHHHHHHHhcCCCCCc--cCCCCCcc-----cc--cCCC--cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928 157 VPARAVMSELFGKATGCC--RGQGGSMH-----MF--SKEH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~~--~G~ggs~h-----~~--~~~~--~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~ 225 (434)
+.+..++.++....++.. ..+.|... ++ ..+. ...+++|+||+++|.|+|+++| .+++
T Consensus 372 i~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la-----------~p~~ 440 (572)
T PRK06456 372 LKPWKIMKTIRQALPRDAIVTTGVGQHQMWAEVFWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLA-----------RPDK 440 (572)
T ss_pred cCHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHhcCcCCCCcEEcCCCcccccchhHHHHHHHHh-----------CCCC
Confidence 566677777766554432 12223211 11 1112 2345679999999999999999 6788
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccccc-----------ccccCchhhhccccCCCcEEEE
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL-----------RATSDPQIYKKGPAFGMPGFHV 293 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~-----------~~~~~~d~~~~a~a~Gi~~~~V 293 (434)
.|||++|||+|++. .++|.||.++++|+++||.||+ |++....+ .....+||.+++++||+++++|
T Consensus 441 ~vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v 518 (572)
T PRK06456 441 VVVDLDGDGSFLMT--GTNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKRIVGVDYGPSPDFVKLAEAFGALGFNV 518 (572)
T ss_pred eEEEEEccchHhcc--hHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCCcccccCCCCCCHHHHHHHCCCeeEEe
Confidence 99999999999987 7899999999999888888886 44321100 0012479999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928 294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (434)
Q Consensus 294 dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~ 328 (434)
+ ++.++.+++++|+ ..++|+|||+.+.+.
T Consensus 519 ~--~~~eL~~al~~a~----~~~~p~lIev~v~~~ 547 (572)
T PRK06456 519 T--TYEDIEKSLKSAI----KEDIPAVIRVPVDKE 547 (572)
T ss_pred C--CHHHHHHHHHHHH----hCCCCEEEEEEeCcc
Confidence 7 4567767665554 568999999999753
No 101
>PLN02470 acetolactate synthase
Probab=99.63 E-value=6.9e-16 Score=167.11 Aligned_cols=117 Identities=26% Similarity=0.378 Sum_probs=94.5
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~ 270 (434)
.+++|+||+++|.|+|+++| .|++.|||++|||+|++. .++|.+|.++++|+++||.||+ +++...
T Consensus 422 ~~~~g~mG~glpaaiGa~la-----------~p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~v~ivV~NN~-~yg~i~ 487 (585)
T PLN02470 422 SGGLGAMGFGLPAAIGAAAA-----------NPDAIVVDIDGDGSFIMN--IQELATIHVENLPVKIMVLNNQ-HLGMVV 487 (585)
T ss_pred CCccccccchHHHHHHHHHh-----------CCCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCC-cchHHH
Confidence 45679999999999999999 788999999999999997 7999999999999888888886 333221
Q ss_pred c-----------ccc-c--------CchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 271 L-----------RAT-S--------DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 271 ~-----------~~~-~--------~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
. ... . .+|+.+++++||+++.+|+. +.++.+++++++ ..++|+|||+.+.+
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~~--~~el~~al~~a~----~~~~p~lieV~i~~ 558 (585)
T PLN02470 488 QWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVTR--KSDLREAIQKML----DTPGPYLLDVIVPH 558 (585)
T ss_pred HHHHHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 0 000 0 26999999999999999974 557777666665 45789999999864
No 102
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.63 E-value=9.5e-16 Score=165.55 Aligned_cols=118 Identities=25% Similarity=0.397 Sum_probs=94.3
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~ 270 (434)
.+++|+||+++|.|+|+++| .++++|||++|||+|++. .++|.+|.++++|+++||.||+ +++...
T Consensus 417 ~~~~g~mG~~lp~aiGa~la-----------~p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~-~~~~i~ 482 (574)
T PRK06882 417 SGGAGTMGFGLPAAIGVKFA-----------HPEATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNR-FLGMVK 482 (574)
T ss_pred CCCcccccchhHHHHHHHhh-----------cCCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECc-hhHHHH
Confidence 45679999999999999999 678899999999999997 6999999999999988888886 333211
Q ss_pred c-------------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 271 L-------------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 271 ~-------------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
. .....+|+.+++++||+++++|+. ..++..++++|++. .++|+|||+.+.+
T Consensus 483 ~~q~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~--~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 483 QWQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGIQIDT--PDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred HHHHHhcCCcccccCCCCCCCHHHHHHHCCCeEEEeCC--HHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 0 001246899999999999999985 45777766665531 3789999999865
No 103
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.63 E-value=1.1e-15 Score=164.87 Aligned_cols=118 Identities=23% Similarity=0.368 Sum_probs=94.5
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~ 269 (434)
.+++|+||+++|.|+|+++| .++++|||++|||+|+++ ..+|.+|.++++|+++||.||+ |++...
T Consensus 415 ~~~~g~mG~~lpaaiGa~la-----------~~~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpvi~vV~NN~~~g~~~~ 481 (564)
T PRK08155 415 SGGLGTMGFGLPAAIGAALA-----------NPERKVLCFSGDGSLMMN--IQEMATAAENQLDVKIILMNNEALGLVHQ 481 (564)
T ss_pred CCCcccccchhHHHHHHHHh-----------CCCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCcccccHH
Confidence 45679999999999999999 678899999999999987 6779999999999988888886 555321
Q ss_pred cc----------cc-ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 270 HL----------RA-TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 270 ~~----------~~-~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
.+ .. ...+|+.+++++||+++++|+. ++++..++++|+ ..++|+|||+.+.+
T Consensus 482 ~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~----~~~~p~lIeV~~~~ 544 (564)
T PRK08155 482 QQSLFYGQRVFAATYPGKINFMQIAAGFGLETCDLNN--EADPQAALQEAI----NRPGPALIHVRIDA 544 (564)
T ss_pred HHHHhcCCCeeeccCCCCCCHHHHHHHCCCeEEEeCC--HHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 10 01 1347899999999999999985 457766555554 46799999999854
No 104
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.63 E-value=8.1e-16 Score=165.35 Aligned_cols=117 Identities=23% Similarity=0.432 Sum_probs=94.4
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCC-CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADC-DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~-d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~ 269 (434)
.+++|+||+++|.|+|+++| .+ +++|||++|||+|++. .++|.+|.+++||+++||.||+ +++..
T Consensus 392 ~~~~g~mG~glpaaiGa~la-----------~p~~~~Vv~i~GDGsf~~~--~~eL~Ta~~~~lpi~ivV~NN~-~~g~i 457 (549)
T PRK06457 392 SAWLGSMGIGVPGSVGASFA-----------VENKRQVISFVGDGGFTMT--MMELITAKKYDLPVKIIIYNNS-KLGMI 457 (549)
T ss_pred CCCcchhhhhHHHHHHHHhc-----------CCCCCeEEEEEcccHHhhh--HHHHHHHHHHCCCeEEEEEECC-ccchH
Confidence 45689999999999999999 66 8899999999999987 7899999999999888887775 34322
Q ss_pred cc-----------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 270 HL-----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 270 ~~-----------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
.. .....+|+.+++++||+++.+|+ ++.++..++++++ ..++|+|||+.+.+
T Consensus 458 ~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~i~~ 520 (549)
T PRK06457 458 KFEQEVMGYPEWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFL----NTKGPAVLDAIVDP 520 (549)
T ss_pred HHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCc
Confidence 11 01124789999999999999998 5567777666654 46899999999853
No 105
>PRK08611 pyruvate oxidase; Provisional
Probab=99.62 E-value=9.6e-16 Score=165.72 Aligned_cols=118 Identities=26% Similarity=0.277 Sum_probs=93.9
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~ 269 (434)
...+|+||+++|.|+|+++| .+++.|||++|||+|++. .++|.+|+++++|+++||.||+ |++-..
T Consensus 404 ~~~~g~mG~glpaaiGa~la-----------~p~~~Vv~i~GDGsf~m~--~~eL~Ta~r~~l~~iivV~NN~~~g~i~~ 470 (576)
T PRK08611 404 SSWLGTMGCGLPGAIAAKIA-----------FPDRQAIAICGDGGFSMV--MQDFVTAVKYKLPIVVVVLNNQQLAFIKY 470 (576)
T ss_pred CCCchhhhhhHHHHHHHHHh-----------CCCCcEEEEEcccHHhhh--HHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 34579999999999999999 688999999999999997 7999999999999887777775 443110
Q ss_pred c---------cccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 270 H---------LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 270 ~---------~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
. ......+|+.+++++||+++.+|+ +++++..+++++ .+.++|+|||+.+.+
T Consensus 471 ~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a----~~~~~p~lIeV~vd~ 531 (576)
T PRK08611 471 EQQAAGELEYAIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEA----LAQDKPVIIDVYVDP 531 (576)
T ss_pred HHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEeCC
Confidence 0 001135799999999999999997 455776666555 456899999999965
No 106
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.62 E-value=1.1e-15 Score=164.63 Aligned_cols=117 Identities=24% Similarity=0.273 Sum_probs=93.6
Q ss_pred CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccc
Q 013928 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH 270 (434)
Q Consensus 192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~ 270 (434)
..+|+||+++|.|+|++++ .++++|||++|||+|++. .++|.+|+++++|+++||.||+ |++....
T Consensus 412 ~~~g~mG~glpaaiGa~la-----------~p~~~vv~i~GDGsf~~~--~~el~ta~~~~l~i~~vv~nN~~~~~~~~~ 478 (557)
T PRK08199 412 PTSGSMGYGLPAAIAAKLL-----------FPERTVVAFAGDGCFLMN--GQELATAVQYGLPIIVIVVNNGMYGTIRMH 478 (557)
T ss_pred CCCccccchHHHHHHHHHh-----------CCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHH
Confidence 4579999999999999999 788999999999999986 7999999999999999999887 4431100
Q ss_pred -c---------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 271 -L---------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 271 -~---------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
. .....+|+.+++++||+++.+|+. ++++.++++++ ++.++|+|||+.+.+
T Consensus 479 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a----~~~~gp~li~v~~~~ 539 (557)
T PRK08199 479 QEREYPGRVSGTDLTNPDFAALARAYGGHGETVER--TEDFAPAFERA----LASGKPALIEIRIDP 539 (557)
T ss_pred HHHhcCCccccccCCCCCHHHHHHHCCCeEEEeCC--HHHHHHHHHHH----HhCCCCEEEEEEeCH
Confidence 0 011246899999999999999985 45666655554 456899999999854
No 107
>PRK08322 acetolactate synthase; Reviewed
Probab=99.62 E-value=1.5e-15 Score=163.10 Aligned_cols=118 Identities=23% Similarity=0.351 Sum_probs=94.3
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~ 269 (434)
..++|.||+++|.|+|+++| .|++.|||++|||+|+++ .++|.+|.++++|+++||.||+ |++...
T Consensus 402 ~~~~g~mG~~lpaaiGa~la-----------~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~ 468 (547)
T PRK08322 402 DNALATMGAGLPSAIAAKLV-----------HPDRKVLAVCGDGGFMMN--SQELETAVRLGLPLVVLILNDNAYGMIRW 468 (547)
T ss_pred CCCcccccchhHHHHHHHHh-----------CCCCcEEEEEcchhHhcc--HHHHHHHHHhCCCeEEEEEeCCCcchHHH
Confidence 45679999999999999999 688999999999999987 7899999999999888887775 543210
Q ss_pred c-------c--ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 270 H-------L--RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 270 ~-------~--~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
. . .....+|+.+++++||+++.+|+ +++++.+++++++ ..++|+|||+.+.+
T Consensus 469 ~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIev~v~~ 529 (547)
T PRK08322 469 KQENMGFEDFGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEAL----AQPGVHVIDCPVDY 529 (547)
T ss_pred HHHhhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 0 0 01125799999999999999997 4567777666654 45799999999854
No 108
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.62 E-value=1.1e-15 Score=164.11 Aligned_cols=118 Identities=25% Similarity=0.427 Sum_probs=94.6
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~ 270 (434)
.+++|+||+++|.|+|+++| .+++.|||++|||+|++. ..+|.+|.++++|+++||.||+ +++...
T Consensus 397 ~~~~g~mG~glpaAiGa~la-----------~p~~~vv~i~GDG~f~~~--~~eL~ta~~~~l~v~ivV~NN~-~~~~~~ 462 (548)
T PRK08978 397 SSGLGTMGFGLPAAIGAQVA-----------RPDDTVICVSGDGSFMMN--VQELGTIKRKQLPVKIVLLDNQ-RLGMVR 462 (548)
T ss_pred CCchhhhhchHHHHHHHHHh-----------CCCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCC-ccHHHH
Confidence 45679999999999999999 688999999999999987 7899999999999888888775 333221
Q ss_pred c----------ccc---cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928 271 L----------RAT---SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (434)
Q Consensus 271 ~----------~~~---~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~ 328 (434)
. ... ..+|+.+++++||+++.+|+ ++.++.+++++++ ..++|+|||+.+.+.
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~id~~ 527 (548)
T PRK08978 463 QWQQLFFDERYSETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLL----NSEGPYLLHVSIDEL 527 (548)
T ss_pred HHHHHHhCCcceecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEecCc
Confidence 1 001 24789999999999999997 4567777666554 467999999999653
No 109
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.62 E-value=7.8e-15 Score=146.28 Aligned_cols=135 Identities=23% Similarity=0.255 Sum_probs=99.8
Q ss_pred cccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCcccc-ccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccccc
Q 013928 194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL 271 (434)
Q Consensus 194 ~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~ 271 (434)
.+.||.++|+|+|+++| .|++.|||+.|||++ ++| .++|.+|+++++|+++||.||+ |++.....
T Consensus 69 ~g~mG~alpaAiGaklA-----------~pd~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~ 135 (301)
T PRK05778 69 HTLHGRAIAFATGAKLA-----------NPDLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLTKGQA 135 (301)
T ss_pred chhhccHHHHHHHHHHH-----------CCCCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhcccCcc
Confidence 47899999999999999 789999999999997 577 7899999999999888888885 55432110
Q ss_pred c----------------cccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe--cCCCCC
Q 013928 272 R----------------ATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETY--RFRGHS 332 (434)
Q Consensus 272 ~----------------~~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~--R~~gHs 332 (434)
. ....+|+..+|+++|+.++ ++.-.++.++.+++++|+ +.+||+|||+.+. -+++..
T Consensus 136 s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~----~~~GpalIeV~~~C~~~~~~~ 211 (301)
T PRK05778 136 SPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAI----SHKGFAFIDVLSPCVTFNGRN 211 (301)
T ss_pred cCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHH----hCCCCEEEEEcCCCCCCCCcC
Confidence 0 0024689999999999986 445557788888777665 4689999998643 333322
Q ss_pred CCCCCCCCCHHHHHHHh
Q 013928 333 LADPDELRDPAEKARYA 349 (434)
Q Consensus 333 ~~D~~~yR~~~e~~~~~ 349 (434)
...+++.+..+|.
T Consensus 212 ----~~~~~~~~~~~~~ 224 (301)
T PRK05778 212 ----TSTKSPAYMREYY 224 (301)
T ss_pred ----CcccCHHHHHHHH
Confidence 2235566666553
No 110
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.61 E-value=1.5e-15 Score=163.49 Aligned_cols=151 Identities=23% Similarity=0.417 Sum_probs=108.9
Q ss_pred CCHHHHHHHHhcCCCCCc--cCCCCCc-----cccc--CCCc--ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928 157 VPARAVMSELFGKATGCC--RGQGGSM-----HMFS--KEHN--LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~~--~G~ggs~-----h~~~--~~~~--~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~ 225 (434)
+++..++.++....++.+ ..+.|.. +++. .+.. ..+++|+||+++|.|+|+++| .+++
T Consensus 363 ~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la-----------~~~~ 431 (558)
T TIGR00118 363 IKPQQVIEELSRVTKDEAIVTTDVGQHQMWAAQFYPFRKPRRFITSGGLGTMGFGLPAAIGAKVA-----------KPES 431 (558)
T ss_pred cCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCccccccchhhHHHhhhhh-----------CCCC
Confidence 556667777776665432 2222321 1111 1122 245679999999999999999 6788
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccc-------------ccccCchhhhccccCCCcEEE
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL-------------RATSDPQIYKKGPAFGMPGFH 292 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~-------------~~~~~~d~~~~a~a~Gi~~~~ 292 (434)
.|||++|||+|+++ ..+|.+|.++++|+++||.||+ +++.... .....+|+.+++++||+++++
T Consensus 432 ~vv~~~GDG~f~~~--~~eL~ta~~~~l~~~~vv~NN~-~~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~ 508 (558)
T TIGR00118 432 TVICITGDGSFQMN--LQELSTAVQYDIPVKILILNNR-YLGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAYGIKGIR 508 (558)
T ss_pred cEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEeCC-chHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHCCCeEEE
Confidence 99999999999986 6799999999999999999887 3332110 111247899999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 293 VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
|+. +.++.+++++++ +.++|+|||+.+.+
T Consensus 509 v~~--~~~l~~al~~a~----~~~~p~liev~~~~ 537 (558)
T TIGR00118 509 IEK--PEELDEKLKEAL----SSNEPVLLDVVVDK 537 (558)
T ss_pred ECC--HHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 986 457777666655 45899999999964
No 111
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.61 E-value=1.3e-15 Score=164.31 Aligned_cols=150 Identities=25% Similarity=0.392 Sum_probs=107.6
Q ss_pred CCHHHHHHHHhcCCCCCc--cCCCCCc-----cccc--CCC--cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928 157 VPARAVMSELFGKATGCC--RGQGGSM-----HMFS--KEH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~~--~G~ggs~-----h~~~--~~~--~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~ 225 (434)
+++..++.++....++.+ ..++|.. +++. .+. ...+++|+||+++|.|+|+++| .|++
T Consensus 369 l~~~~~~~~l~~~~~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA-----------~p~~ 437 (566)
T PRK07282 369 VQPQAVIERIGELTNGDAIVVTDVGQHQMWAAQYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIA-----------NPDK 437 (566)
T ss_pred cCHHHHHHHHHhhcCCCeEEEECCcHHHHHHHHhcccCCCCcEecCCccccccchhhHhheehee-----------cCCC
Confidence 566777777766544322 2333321 1111 112 2245679999999999999999 7889
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccc------------c-ccCchhhhccccCCCcEEE
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR------------A-TSDPQIYKKGPAFGMPGFH 292 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~------------~-~~~~d~~~~a~a~Gi~~~~ 292 (434)
.|||++|||+|++. .++|.+|.++++|+++||.||+ +++..... . ...+|+.+++++||+.+.+
T Consensus 438 ~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~ 514 (566)
T PRK07282 438 EVILFVGDGGFQMT--NQELAILNIYKVPIKVVMLNNH-SLGMVRQWQESFYEGRTSESVFDTLPDFQLMAQAYGIKHYK 514 (566)
T ss_pred cEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCC-CchHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCEEEE
Confidence 99999999999987 7899999999999888888776 44432110 1 1357899999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 293 VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
|+. +.++.++++ .. ..++|+|||+.+.+
T Consensus 515 v~~--~~el~~al~----~~-~~~~p~lIeV~v~~ 542 (566)
T PRK07282 515 FDN--PETLAQDLE----VI-TEDVPMLIEVDISR 542 (566)
T ss_pred ECC--HHHHHHHHH----Hh-cCCCCEEEEEEeCC
Confidence 984 456666554 22 34799999999865
No 112
>PLN02573 pyruvate decarboxylase
Probab=99.60 E-value=2.1e-15 Score=163.17 Aligned_cols=118 Identities=14% Similarity=0.018 Sum_probs=94.6
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~ 270 (434)
.+++|+||+++|.|+|+++| .++++|||++|||+|+|. .++|.+|+++++|+++||.||+ +++...
T Consensus 424 ~~~~gsmG~glpaaiGa~lA-----------~p~r~vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~vV~NN~-~yg~~~ 489 (578)
T PLN02573 424 QMQYGSIGWSVGATLGYAQA-----------APDKRVIACIGDGSFQVT--AQDVSTMIRCGQKSIIFLINNG-GYTIEV 489 (578)
T ss_pred ecchhhhhhhhhHHHHHHHh-----------CCCCceEEEEeccHHHhH--HHHHHHHHHcCCCCEEEEEeCC-ceeEEE
Confidence 46679999999999999999 688999999999999987 7999999999999888888776 344322
Q ss_pred cc------cccCchhhhccccCC-----CcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 271 LR------ATSDPQIYKKGPAFG-----MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 271 ~~------~~~~~d~~~~a~a~G-----i~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
.. ....+|+.+++++|| +++.+|+. +.++.+++++|++. ..++|+|||+.+.
T Consensus 490 ~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~--~~eL~~al~~a~~~--~~~~p~lieV~v~ 552 (578)
T PLN02573 490 EIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRT--EEELIEAIATATGE--KKDCLCFIEVIVH 552 (578)
T ss_pred eecccCccccCCCCHHHHHHHhcCcCCceeEEEecC--HHHHHHHHHHHHhh--CCCCcEEEEEEcC
Confidence 11 113578999999985 89999985 55777777766531 2578999999873
No 113
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.60 E-value=8.2e-15 Score=144.61 Aligned_cols=117 Identities=16% Similarity=0.177 Sum_probs=88.4
Q ss_pred cccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCCeEEEEEcCC-ccCccccc
Q 013928 194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL 271 (434)
Q Consensus 194 ~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~ 271 (434)
.++||.++|+|+|+++| .|++.|||+.|||+++ +| ..++.+|+++++||++||.||+ |++.....
T Consensus 67 ~~~~G~alPaAiGaklA-----------~Pdr~VV~i~GDG~f~~~g--~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~ 133 (277)
T PRK09628 67 HTTHGRAVAYATGIKLA-----------NPDKHVIVVSGDGDGLAIG--GNHTIHGCRRNIDLNFILINNFIYGLTNSQT 133 (277)
T ss_pred eeccccHHHHHHHHHHH-----------CCCCeEEEEECchHHHHhh--HHHHHHHHHhCcCeEEEEEEChHHhcceecc
Confidence 35889999999999999 7899999999999986 45 6678889999999888888875 55422100
Q ss_pred c----------------cccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 272 R----------------ATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 272 ~----------------~~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
. ..++.|+.++|++||++++ +..-.++.++.+++++|+ +.+||+|||+.+.-
T Consensus 134 ~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~Al----~~~Gp~lIeV~~~c 202 (277)
T PRK09628 134 SPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKLEKLLVKGF----SHKGFSFFDVFSNC 202 (277)
T ss_pred cCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHHHH----hCCCCEEEEEcCCC
Confidence 0 0123477999999999985 333346778877666665 46899999997643
No 114
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.60 E-value=2.9e-15 Score=163.13 Aligned_cols=153 Identities=22% Similarity=0.243 Sum_probs=108.4
Q ss_pred CCHHHHHHHHhcCCCCCc--cCCCCC-----ccccc--CCCc--ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928 157 VPARAVMSELFGKATGCC--RGQGGS-----MHMFS--KEHN--LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~~--~G~ggs-----~h~~~--~~~~--~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~ 225 (434)
+.+..++.++....+... ..+.|. .+++. .+.. ..+++|+||+++|.|+|+++| .+++
T Consensus 398 l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la-----------~p~~ 466 (612)
T PRK07789 398 LAPQYVIERLGEIAGPDAIYVAGVGQHQMWAAQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVG-----------RPDK 466 (612)
T ss_pred cCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchhhhHHhhhcc-----------CCCC
Confidence 566677777766544321 222232 11111 1122 245679999999999999999 6889
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccc---------c--c-cc---cCchhhhccccCCCc
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH---------L--R-AT---SDPQIYKKGPAFGMP 289 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~---------~--~-~~---~~~d~~~~a~a~Gi~ 289 (434)
.|||++|||+|++. .++|.+|++++||+++||.||+ |++-... . . .. ..+|+.+++++||++
T Consensus 467 ~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~ 544 (612)
T PRK07789 467 EVWAIDGDGCFQMT--NQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCV 544 (612)
T ss_pred cEEEEEcchhhhcc--HHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCCe
Confidence 99999999999987 7999999999999888888775 4431100 0 0 00 136899999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 290 GFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 290 ~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
+.+|+ ++.++..++++|++. .++|+|||+.+.+
T Consensus 545 ~~~V~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 577 (612)
T PRK07789 545 GLRCE--REEDVDAVIEKARAI---NDRPVVIDFVVGK 577 (612)
T ss_pred EEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEECC
Confidence 99997 456777777666542 3689999999864
No 115
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.58 E-value=3.8e-15 Score=159.76 Aligned_cols=150 Identities=16% Similarity=0.129 Sum_probs=104.3
Q ss_pred CCHHHHHHHHhcCCCCC----ccCCCCCcccc----c-CCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceE
Q 013928 157 VPARAVMSELFGKATGC----CRGQGGSMHMF----S-KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVT 227 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~----~~G~ggs~h~~----~-~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~v 227 (434)
+.+.+++.++....+.. ...+.|..+++ . ......+.+|+||+++|.|+|+++| .+ +++
T Consensus 356 i~p~~~~~~l~~~l~~~~~~ii~~D~G~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA-----------~~-~r~ 423 (535)
T TIGR03394 356 IAPMDIARAVNDRFARHGQMPLAADIGDCLFTAMDMDDAGLMAPGYYAGMGFGVPAGIGAQCT-----------SG-KRI 423 (535)
T ss_pred cCHHHHHHHHHHHhCCCCCEEEEEccCHHHHHHHhcCCCcEECcCccchhhhHHHHHHHHHhC-----------CC-CCe
Confidence 56666666665544321 22334432222 1 1112245779999999999999998 33 456
Q ss_pred EEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccc-------ccCchhhhccccCCCcEEEEeCCCHHH
Q 013928 228 LAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------TSDPQIYKKGPAFGMPGFHVDGMDVLK 300 (434)
Q Consensus 228 v~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~-------~~~~d~~~~a~a~Gi~~~~VdG~D~~a 300 (434)
|+++|||+|++. .++|.||.++++|+++||.||+ +++.....+ ...+|+.+++++||+++.+|+. +.+
T Consensus 424 v~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~-~y~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~e 498 (535)
T TIGR03394 424 LTLVGDGAFQMT--GWELGNCRRLGIDPIVILFNNA-SWEMLRVFQPESAFNDLDDWRFADMAAGMGGDGVRVRT--RAE 498 (535)
T ss_pred EEEEeChHHHhH--HHHHHHHHHcCCCcEEEEEECC-ccceeehhccCCCcccCCCCCHHHHHHHcCCCceEeCC--HHH
Confidence 889999999986 7999999999999888888875 343322111 2357899999999999999984 557
Q ss_pred HHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 301 VREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 301 v~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
+..++++|++ ..++|+|||+.+.
T Consensus 499 L~~al~~a~~---~~~~p~lIev~i~ 521 (535)
T TIGR03394 499 LAAALDKAFA---TRGRFQLIEAMLP 521 (535)
T ss_pred HHHHHHHHHh---cCCCeEEEEEECC
Confidence 7776666653 2356899999873
No 116
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.56 E-value=1.1e-14 Score=156.81 Aligned_cols=117 Identities=22% Similarity=0.261 Sum_probs=92.9
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~ 269 (434)
.+++|+||+++|.|+|+++| +++.|||++|||+|+|. .++|.||+++++|+++||.||+ |.....
T Consensus 413 ~~~~gsmG~~lpaaiGaala------------~~~~vv~i~GDGsf~m~--~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~ 478 (554)
T TIGR03254 413 VGTWGVMGIGMGYAIAAAVE------------TGKPVVALEGDSAFGFS--GMEVETICRYNLPVCVVIFNNGGIYRGDD 478 (554)
T ss_pred CCCCCcCCchHHHHHHHHhc------------CCCcEEEEEcCchhccc--HHHHHHHHHcCCCEEEEEEeChhhhhhhh
Confidence 45679999999999999998 26789999999999997 6889999999999999999886 311100
Q ss_pred c--------ccc-ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 270 H--------LRA-TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 270 ~--------~~~-~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
. ... ...+||.+++++||+++++|+ ++.++..++++|+ ..++|+|||+.+.+
T Consensus 479 ~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIev~id~ 539 (554)
T TIGR03254 479 VNVVGADPAPTVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEAL----ASGKPTLINAVIDP 539 (554)
T ss_pred hhhcCCCCCccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEECC
Confidence 0 001 135789999999999999997 4567777666664 45789999999853
No 117
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.56 E-value=8.1e-15 Score=158.83 Aligned_cols=117 Identities=25% Similarity=0.370 Sum_probs=93.5
Q ss_pred CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccc
Q 013928 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH 270 (434)
Q Consensus 192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~ 270 (434)
+++|+||+++|.|+|+++| .+++.|||++|||+|++. ..+|.+|.++++|+++||.||+ |++....
T Consensus 416 ~~~gsmG~~lpaaiGa~la-----------~p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~ 482 (586)
T PRK06276 416 GGLGTMGFGFPAAIGAKVA-----------KPDANVIAITGDGGFLMN--SQELATIAEYDIPVVICIFDNRTLGMVYQW 482 (586)
T ss_pred CCccccccchhHHHhhhhh-----------cCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHH
Confidence 4569999999999999999 678899999999999987 6899999999999888888876 4432100
Q ss_pred ---------ccc--ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 271 ---------LRA--TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 271 ---------~~~--~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
... ....|+.+++++||+++++|+ +++++..++++++ ..++|+|||+.+.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~i~~ 544 (586)
T PRK06276 483 QNLYYGKRQSEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAI----KSGEPYLLDIIIDP 544 (586)
T ss_pred HHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEecc
Confidence 001 124689999999999999997 4567777666665 45799999999854
No 118
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.55 E-value=1.6e-14 Score=155.98 Aligned_cols=116 Identities=25% Similarity=0.282 Sum_probs=92.9
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccC--cc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI--GM 268 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~i--s~ 268 (434)
.+.+|+||+++|.|+|+++| +++.|||++|||+|++. .++|.||.++++|+++||.||+ ++ ..
T Consensus 420 ~~~~gsmG~glpaaiGa~la------------~~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~-~~~~~~ 484 (569)
T PRK09259 420 CGTWGVMGIGMGYAIAAAVE------------TGKPVVAIEGDSAFGFS--GMEVETICRYNLPVTVVIFNNG-GIYRGD 484 (569)
T ss_pred CCCCccccccHHHHHHHHhc------------CCCcEEEEecCcccccc--HHHHHHHHHcCCCEEEEEEeCh-hHHHHH
Confidence 45679999999999999998 26789999999999987 6889999999999999999987 33 11
Q ss_pred cc------c---cc-ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 269 SH------L---RA-TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 269 ~~------~---~~-~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
.. . .. .+++|+.+++++||+++++|+. +.++..++++|+ ..++|+|||+.+.+
T Consensus 485 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~el~~al~~a~----~~~~p~lIev~id~ 547 (569)
T PRK09259 485 DVNLSGAGDPSPTVLVHHARYDKMMEAFGGVGYNVTT--PDELRHALTEAI----ASGKPTLINVVIDP 547 (569)
T ss_pred HHHhhcCCCccccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHH----hCCCCEEEEEEECC
Confidence 00 0 00 1357899999999999999974 567777666665 46899999999853
No 119
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.54 E-value=5.2e-14 Score=138.91 Aligned_cols=118 Identities=23% Similarity=0.190 Sum_probs=92.3
Q ss_pred CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (434)
Q Consensus 192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~ 269 (434)
+..+.||.++|+|+|+++| +|++.|||+.|||++. .| .++|.+|+++++||++||.||+ |++...
T Consensus 57 ~~~~~mG~alp~AiGaklA-----------~pd~~VVai~GDG~~~~iG--~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~ 123 (280)
T PRK11869 57 GFHTLHGRAIPAATAVKAT-----------NPELTVIAEGGDGDMYAEG--GNHLIHAIRRNPDITVLVHNNQVYGLTKG 123 (280)
T ss_pred CCCcccccHHHHHHHHHHH-----------CCCCcEEEEECchHHhhCc--HHHHHHHHHhCcCcEEEEEECHHHhhhcc
Confidence 3446699999999999999 7899999999999986 56 7899999999999888888885 554321
Q ss_pred ccc----------------cccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 270 HLR----------------ATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 270 ~~~----------------~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
... .....|+.++++++|++++.. +-.++.++.+++++|+ +.+||+|||+.+.
T Consensus 124 Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al----~~~Gp~lIeV~~p 193 (280)
T PRK11869 124 QASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAI----KHKGLAIVDIFQP 193 (280)
T ss_pred eecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHH----hCCCCEEEEEECC
Confidence 110 012358999999999998863 3557888888777666 4689999999754
No 120
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.54 E-value=4e-14 Score=144.69 Aligned_cols=132 Identities=18% Similarity=0.206 Sum_probs=98.0
Q ss_pred cccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCC-CeEEEEEcCC-ccCccccc
Q 013928 194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKL-PIVFVVENNL-WAIGMSHL 271 (434)
Q Consensus 194 ~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~L-PvI~VV~NN~-y~is~~~~ 271 (434)
.|+||+++|+|+|+++| .+++.|||+.|||+|.+. .++|.+++++++ |+++||.||+ |+......
T Consensus 220 ~GsMG~a~p~AlG~ala-----------~p~r~Vv~i~GDGsflm~--~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~ 286 (361)
T TIGR03297 220 VGSMGHASQIALGLALA-----------RPDQRVVCLDGDGAALMH--MGGLATIGTQGPANLIHVLFNNGAHDSVGGQP 286 (361)
T ss_pred echhhhHHHHHHHHHHH-----------CCCCCEEEEEChHHHHHH--HHHHHHHHHhCCCCeEEEEEcCccccccCCcC
Confidence 58999999999999999 678999999999999876 678999999997 7888888886 33211111
Q ss_pred ccccCchhhhccccCCC-cEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHH
Q 013928 272 RATSDPQIYKKGPAFGM-PGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKA 346 (434)
Q Consensus 272 ~~~~~~d~~~~a~a~Gi-~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~ 346 (434)
......|+.++|++||+ .+++|+ +..++.+++++++ +.++|+|||+++....+-...-+ -.++.|.+
T Consensus 287 ~~~~~~d~~~iA~a~G~~~~~~v~--~~~eL~~al~~a~----~~~gp~lIeV~v~~g~~~~l~rp--~~~p~e~~ 354 (361)
T TIGR03297 287 TVSQHLDFAQIAKACGYAKVYEVS--TLEELETALTAAS----SANGPRLIEVKVRPGSRADLGRP--TTSPPENK 354 (361)
T ss_pred CCCCCCCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHH----hCCCcEEEEEEecCCCccCCCCC--CCCHHHHH
Confidence 11135789999999997 567775 6678877766654 45789999999876554332222 24566654
No 121
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.54 E-value=2.1e-14 Score=138.95 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=90.9
Q ss_pred CcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccc
Q 013928 193 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH 270 (434)
Q Consensus 193 ~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~ 270 (434)
..++||+++|.|+|+++|.... ..++++|||+.|||++. +| ..++.++.++++|+++||.||+ |++....
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~------~~p~~~Vv~i~GDG~~~~~g--~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q 133 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRE------LDKKKDVVVIGGDGATYDIG--FGALSHSLFRGEDITVIVLDNEVYSNTGGQ 133 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccc------cCCCCcEEEEeCchHHHhcc--HHHHHHHHHcCCCeEEEEECCccccCCCCC
Confidence 4599999999999999882211 14688999999999986 67 6788899999999999888886 4432111
Q ss_pred cc----------------cccCchhhhccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 271 LR----------------ATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 271 ~~----------------~~~~~d~~~~a~a~Gi~~~~-VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
.. ....+|+.+++++||+++++ +.-.++.++..++++|++ +.++|+|||+.+.
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~---~~~GP~lI~v~i~ 203 (237)
T cd02018 134 RSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAIS---RTDGPTFIHAYTP 203 (237)
T ss_pred CCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHh---cCCCCEEEEEeCC
Confidence 10 11346899999999999985 233356787776666652 2689999999863
No 122
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.53 E-value=3.7e-14 Score=139.99 Aligned_cols=118 Identities=24% Similarity=0.313 Sum_probs=93.1
Q ss_pred CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCcc-ccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDG-TCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (434)
Q Consensus 192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDG-a~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~ 269 (434)
...+.||.++|+|+|+++| .|+..||+++||| ++.+| .++|.+|.++++|+++||.||+ |++...
T Consensus 56 ~~~~~~G~alp~A~GaklA-----------~Pd~~VV~i~GDG~~f~ig--~~eL~tA~rrn~~i~vIV~nN~~ygmtgg 122 (279)
T PRK11866 56 GIHGIHGRVLPIATGVKWA-----------NPKLTVIGYGGDGDGYGIG--LGHLPHAARRNVDITYIVSNNQVYGLTTG 122 (279)
T ss_pred CcccccccHHHHHHHHHHH-----------CCCCcEEEEECChHHHHcc--HHHHHHHHHHCcCcEEEEEEChhhhhhcc
Confidence 3468899999999999999 7899999999999 68998 8999999999999888888885 555331
Q ss_pred ccccc----------------cCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 270 HLRAT----------------SDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 270 ~~~~~----------------~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
+...+ ...|+.++++++|++++ +....++.++.+++++|+ +.+||+|||+...
T Consensus 123 Q~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al----~~~Gps~I~v~~p 192 (279)
T PRK11866 123 QASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAI----KHKGFSFIDVLSP 192 (279)
T ss_pred cccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHH----hCCCCEEEEEeCC
Confidence 11000 01388999999999876 455578888877666665 5689999999743
No 123
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.52 E-value=6.5e-14 Score=138.94 Aligned_cols=116 Identities=20% Similarity=0.208 Sum_probs=90.3
Q ss_pred CcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccc-cccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccc
Q 013928 193 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT-CNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH 270 (434)
Q Consensus 193 ~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa-~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~ 270 (434)
..++||.++|+|+|+++| .|++.|||+.|||+ +++| ..+|.+|.++++|+++||.||+ |++....
T Consensus 67 ~~g~mG~alpaAiGaklA-----------~Pd~~VV~i~GDG~~f~mg--~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q 133 (286)
T PRK11867 67 FHTIHGRALAIATGLKLA-----------NPDLTVIVVTGDGDALAIG--GNHFIHALRRNIDITYILFNNQIYGLTKGQ 133 (286)
T ss_pred hhhhhhcHHHHHHHHHHh-----------CCCCcEEEEeCccHHHhCC--HHHHHHHHHhCCCcEEEEEeCHHHhhhcCc
Confidence 348999999999999999 78999999999995 8888 8899999999999888888775 5553211
Q ss_pred ccc----------------ccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928 271 LRA----------------TSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 271 ~~~----------------~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t 325 (434)
... ....++.+++.++|...+ ++...++.++.+++++|+ +.++|+|||+.+
T Consensus 134 ~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al----~~~Gp~lIev~~ 201 (286)
T PRK11867 134 YSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAI----NHKGFSFVEILQ 201 (286)
T ss_pred cCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHH----hCCCCEEEEEeC
Confidence 100 012578889999999876 444557788877777665 468999999964
No 124
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.50 E-value=5.1e-12 Score=134.25 Aligned_cols=273 Identities=19% Similarity=0.194 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-eecccccCCCChHH-HHHHHHHhcCC------CCEEEccCcchHHH-----
Q 013928 86 KQEGLELYEDMILGRSFEDMCAQMYYRG-KMFGFVHLYNGQEA-VSTGFIKLLKK------EDSVVSTYRDHVHA----- 152 (434)
Q Consensus 86 ~e~ll~ly~~M~~~R~fe~~~~~~~~~g-k~~G~~h~~~GqEa-~~~g~~~~L~~------~D~v~~~yR~~~~~----- 152 (434)
..++.+-++..++=... .++.+..+.+ ++.|+..++..--. .-++....+++ +|.|| +.+|+..
T Consensus 74 d~~lErrir~~irWna~-a~vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~ggDlV~--~qgHaSPg~yAr 150 (887)
T COG2609 74 DLELERRIRSLIRWNAH-AMVLRASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGGDLVF--FQGHASPGIYAR 150 (887)
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCCceEE--EecCCCchHHHH
Confidence 33454445544443333 2233333332 34444433322221 23566677776 49998 4566432
Q ss_pred -HHcCC-CHHHHHHHHhcCCCCCccCCCCCcccc-cCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEE
Q 013928 153 -LSKGV-PARAVMSELFGKATGCCRGQGGSMHMF-SKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLA 229 (434)
Q Consensus 153 -La~G~-~~~~i~~el~g~~~g~~~G~ggs~h~~-~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~ 229 (434)
...|. +.++ +..+..-..| .|.+.-.|.. .++..-+ .+.+||-|...|+-.|.-.||...+...+.++.+|+|
T Consensus 151 afLeGRlseeq-LdnFRqev~g--~gl~SYPhp~lmpdfwqF-pTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~a 226 (887)
T COG2609 151 AFLEGRLTEEQ-LDNFRQEVDG--KGLSSYPHPKLMPDFWQF-PTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWA 226 (887)
T ss_pred HHHhccccHHH-HHHHHHhccC--CCCCCCCCCcCCcccccc-CcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEE
Confidence 22453 3333 3334443321 1222222322 1222212 3578999999999999999999877655578899999
Q ss_pred EeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCcccccccc-cCchhhhccccCCCcEEEE--------------
Q 013928 230 FFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHV-------------- 293 (434)
Q Consensus 230 ~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~~-~~~d~~~~a~a~Gi~~~~V-------------- 293 (434)
|.|||.+.++...+++..|++.+|+ ++|||+.|...+..+..... -...+..++++.||.+++|
T Consensus 227 fLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~ 306 (887)
T COG2609 227 FLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDT 306 (887)
T ss_pred EecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccC
Confidence 9999999999999999999999998 99999999878887764432 1246788899999999987
Q ss_pred -------------------------------------------------------eCCCHHHHHHHHHHHHHHHHccC-C
Q 013928 294 -------------------------------------------------------DGMDVLKVREVAKEAIERARRGE-G 317 (434)
Q Consensus 294 -------------------------------------------------------dG~D~~av~~a~~~Al~~ar~~~-g 317 (434)
-|+|+..|++|++.|. ..+ +
T Consensus 307 ~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki~aA~~~A~----~~kg~ 382 (887)
T COG2609 307 GGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKKAQ----EHKGR 382 (887)
T ss_pred cchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHHHHHHHHHh----cCCCC
Confidence 4899999999777665 444 8
Q ss_pred CEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhcCChHHHHHHHHHHcCC-CCHHHHHH
Q 013928 318 PTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSL-ASEAELKA 374 (434)
Q Consensus 318 P~lIev~t~R~~gHs~~D~~~yR~~~e~~~~~~~DPl~~~~~~L~~~G~-~te~e~~~ 374 (434)
|++|-++|.+++|-...-..+--..+.. -...|-|+.||+.+ |+ ++++|+++
T Consensus 383 PtvilA~TIKGyglg~~~eg~n~aHq~k--km~~~~l~~~Rdr~---~ipvsd~e~e~ 435 (887)
T COG2609 383 PTVILAKTIKGYGLGEAAEGKNIAHQVK--KMTPDQLKEFRDRF---GIPVSDAELEE 435 (887)
T ss_pred ceEEEEeeeccccCchhhcccchhhhhh--cCCHHHHHHHHhhc---CCCCchhhhhc
Confidence 9999999999998754322111000000 01224566777766 44 46666665
No 125
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.48 E-value=4.3e-14 Score=152.52 Aligned_cols=115 Identities=20% Similarity=0.206 Sum_probs=90.1
Q ss_pred CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCc-cc
Q 013928 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIG-MS 269 (434)
Q Consensus 192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is-~~ 269 (434)
.+++.||+++|.|+|+++| +++.|||++|||+|+++ ..+|.+|+++++|+++||.||+ |++- ..
T Consensus 422 ~g~~~~G~~lpaaiGaala------------~~~~vv~i~GDGsf~~~--~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~ 487 (568)
T PRK07449 422 RGASGIDGLLSTAAGVARA------------SAKPTVALIGDLSFLHD--LNGLLLLKQVPAPLTIVVVNNNGGGIFSLL 487 (568)
T ss_pred CCccchhhHHHHHHHHHhc------------CCCCEEEEechHHhhcC--cHHHHhhcccCCCeEEEEEECCCCccccCC
Confidence 4467899999999999998 36789999999999987 6899999999999888888776 5521 11
Q ss_pred ccc-----------cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 270 HLR-----------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 270 ~~~-----------~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
... ....+|+.+++++||+++.+|+ ++.++..++++|+ +.++|+|||+.+.
T Consensus 488 ~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~----~~~~p~lIev~id 549 (568)
T PRK07449 488 PQPEEEPVFERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADAL----PTPGLTVIEVKTN 549 (568)
T ss_pred CCCCCcchhhHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHh----cCCCCEEEEEeCC
Confidence 100 0134689999999999999997 4567777666654 5679999999873
No 126
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.48 E-value=1.7e-13 Score=135.69 Aligned_cols=117 Identities=23% Similarity=0.308 Sum_probs=88.0
Q ss_pred CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (434)
Q Consensus 192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~ 269 (434)
+..+.||.++|+|+|+++| +|++.|||+.|||++. +| .++|.+|+++++||++||.||+ |++...
T Consensus 50 ~~~t~mG~alPaAiGaklA-----------~Pd~~VVai~GDG~f~~mg--~~eL~tA~r~nl~I~vIVlNN~~yGmt~g 116 (287)
T TIGR02177 50 GFHGLHGRALPVATGIKLA-----------NPHLKVIVVGGDGDLYGIG--GNHFVAAGRRNVDITVIVHDNQVYGLTKG 116 (287)
T ss_pred CcccccccHHHHHHHHHHH-----------CCCCcEEEEeCchHHHhcc--HHHHHHHHHhCcCeEEEEEECHHHHhhhc
Confidence 3346689999999999999 7899999999999974 87 8899999999999888888885 554321
Q ss_pred ccccc------------------cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 270 HLRAT------------------SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 270 ~~~~~------------------~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
....+ .++++..++.++|+.....- .++.++.+++++|+ +.+||+|||+.+.
T Consensus 117 Q~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~-~~~~eL~~ai~~Al----~~~GpslIeV~~p 186 (287)
T TIGR02177 117 QASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS-GDVAHLKEIIKEAI----NHKGYALVDILQP 186 (287)
T ss_pred ccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEec-CCHHHHHHHHHHHH----hCCCCEEEEEeCC
Confidence 11000 13456677888887666522 57788887777665 4689999999753
No 127
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.44 E-value=7.3e-13 Score=143.93 Aligned_cols=159 Identities=23% Similarity=0.208 Sum_probs=111.7
Q ss_pred HHHHHcCCCHHHHHHHHhcCCCCCc--cCCCCCccccc-CCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928 150 VHALSKGVPARAVMSELFGKATGCC--RGQGGSMHMFS-KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 226 (434)
Q Consensus 150 ~~~La~G~~~~~i~~el~g~~~g~~--~G~ggs~h~~~-~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~ 226 (434)
...+.-|++-..++.++....+... .++.|.+.++. ++..+...+++||+++|.|+|+++| .+++.
T Consensus 355 ~~~~C~GCp~~~~~~~l~~~l~~d~ivv~D~G~~~~~~~~p~~~~~~~~~mG~~~~~AiGa~~a-----------~p~~~ 423 (595)
T TIGR03336 355 PPSLCAGCPHRATFYAMKKVADREAIFPSDIGCYTLGIQPPLGTVDTTLCMGASIGVASGLSKA-----------GEKQR 423 (595)
T ss_pred CCCCCCCCCChHHHHHHHHhccCCcEEecCcchhhccccCCccccceeeccCchHHHHhhhhhc-----------CCCCC
Confidence 4445567766667666665554332 34545333322 2333444568999999999999999 68899
Q ss_pred EEEEeCcccccc-chHHHHHHHHHHcCCCeEEEEEcC-CccCcccccc-c---------ccCchhhhccccCCCcEEEEe
Q 013928 227 TLAFFGDGTCNN-GQFFECLNMAALWKLPIVFVVENN-LWAIGMSHLR-A---------TSDPQIYKKGPAFGMPGFHVD 294 (434)
Q Consensus 227 vv~~~GDGa~~~-G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~~~~-~---------~~~~d~~~~a~a~Gi~~~~Vd 294 (434)
||+++|||+|.+ | .++|.+|.++++|+++||.|| .|++...... . ...+|+.+++++||+++.+|.
T Consensus 424 Vv~i~GDG~f~~~g--~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~ 501 (595)
T TIGR03336 424 IVAFIGDSTFFHTG--IPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVV 501 (595)
T ss_pred EEEEeccchhhhcC--HHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEe
Confidence 999999999985 5 679999999999988888877 4554321110 0 124689999999999999987
Q ss_pred CC-CHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928 295 GM-DVLKVREVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 295 G~-D~~av~~a~~~Al~~ar~~~gP~lIev~t 325 (434)
.. |+.++.+++++++ ..++|++|++..
T Consensus 502 ~~~~l~~l~~al~~a~----~~~gp~li~v~~ 529 (595)
T TIGR03336 502 DPLNVKETIEVFKAAL----AAEGVSVIIAKQ 529 (595)
T ss_pred CcCCHHHHHHHHHHHH----hcCCCEEEEEcc
Confidence 64 5455666665555 467999999954
No 128
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.43 E-value=4.3e-12 Score=126.23 Aligned_cols=186 Identities=19% Similarity=0.144 Sum_probs=130.5
Q ss_pred CCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCCeEEEEEcCC-c
Q 013928 187 EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-W 264 (434)
Q Consensus 187 ~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvI~VV~NN~-y 264 (434)
.+++....+.+|.+.++|.|++.|.+.. +++..|||+.|||++. .| .++|.-|...+.++++||.||+ |
T Consensus 61 ~~~~~~~~~~fg~~~a~a~Gi~~a~~~~-------~~~~~Vv~~~GDG~~~dIG--~~~L~~a~~r~~ni~~ivlDNe~Y 131 (299)
T PRK11865 61 AWNVPWIHVAFENAAAVASGIERAVKAL-------GKKVNVVAIGGDGGTADIG--FQSLSGAMERGHNILYLMYDNEAY 131 (299)
T ss_pred ccccccchhhhcchHHHHHHHHHHHHHh-------cCCCeEEEEeCCchHhhcc--HHHHHHHHHcCCCeEEEEECCccc
Confidence 3456667789999999999999997765 3467899999999974 77 6999999999999999999997 3
Q ss_pred cCcccccc---------------------cccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEE
Q 013928 265 AIGMSHLR---------------------ATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVE 322 (434)
Q Consensus 265 ~is~~~~~---------------------~~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIe 322 (434)
+.+..+.. .....|+..++.++|++++ +++-.++.++.+++++|+ +.+||.||+
T Consensus 132 ~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~----~~~Gps~I~ 207 (299)
T PRK11865 132 MNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAK----EVEGPAYIQ 207 (299)
T ss_pred cCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHH----hCCCCEEEE
Confidence 33221110 1123578889999999887 778789999988777766 468999999
Q ss_pred EEEe--cCCCCCCCC--------------------CCCCC---CHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHH
Q 013928 323 CETY--RFRGHSLAD--------------------PDELR---DPAEKARYAARDPITALKKYLIESSLASEAELKAIEK 377 (434)
Q Consensus 323 v~t~--R~~gHs~~D--------------------~~~yR---~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~ 377 (434)
+.+. ..+++...+ +..++ .+..+. -+.+.|+..|-+..-++..+++++++++++
T Consensus 208 v~sPC~~~~~~~~~~~~~~~klAvetg~~plye~~~g~~~~~~~~~~ld-~~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~ 286 (299)
T PRK11865 208 VLQPCPTGWGFPPEKTIEIGRLAVETGYWPLFEIENGKFKITYEPLHLD-RRTRKPIEEYLKVQGRFKHLTEEDIEILQK 286 (299)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHhcCceeEEEEECCeeccCCCccccc-ccCCCCHHHHHhhCcchhcCCHHHHHHHHH
Confidence 9754 445444221 11111 111111 011346555555555566778999999999
Q ss_pred HHHHHHHHH
Q 013928 378 KIDEVVEDA 386 (434)
Q Consensus 378 e~~~~v~~a 386 (434)
++++.++.-
T Consensus 287 ~v~~~~~~~ 295 (299)
T PRK11865 287 YIDEKWKEL 295 (299)
T ss_pred HHHHHHHHH
Confidence 999887654
No 129
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.37 E-value=2.9e-12 Score=133.00 Aligned_cols=162 Identities=22% Similarity=0.236 Sum_probs=110.8
Q ss_pred CChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCc--ccCCccccccc
Q 013928 123 NGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHN--LLGGFAFIGEG 200 (434)
Q Consensus 123 ~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~--~~~~~g~lG~g 200 (434)
+=||-+.--+...|+++|.|+.- -| . .+|| +.-+.+..... .-+-+|++|+.
T Consensus 363 Ltq~~~w~~~~~fl~p~dviiae-tG--t-------------S~FG----------~~~~~lP~~~~~i~Q~lWGSIG~t 416 (557)
T COG3961 363 LTQEWLWNTVQNFLKPGDVIIAE-TG--T-------------SFFG----------ALDIRLPKGATFISQPLWGSIGYT 416 (557)
T ss_pred ccHHHHHHHHHhhCCCCCEEEEc-cc--c-------------cccc----------ceeeecCCCCeEEcccchhhcccc
Confidence 55777777788889999988863 01 0 0111 11222222222 24568999999
Q ss_pred chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCcccccccc-----
Q 013928 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRAT----- 274 (434)
Q Consensus 201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~~----- 274 (434)
+|+|+|+++| .++++||.|+||||+++. .+++.+..+|+|+ +|||++|++|.|..-.+...
T Consensus 417 ~pAalGa~~A-----------~~drR~IL~iGDGs~QlT--vQEiStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNd 483 (557)
T COG3961 417 LPAALGAALA-----------APDRRVILFIGDGSLQLT--VQEISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYND 483 (557)
T ss_pred cHhhhhhhhc-----------CCCccEEEEEcCchhhhh--HHHHHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCccc
Confidence 9999999999 789999999999999986 8999999999998 77777788888765443311
Q ss_pred -cCchhhhccccCCCcEEEE--eCCCHHHHHHHHHHHHHHHHc-cCCCEEEEEEEec
Q 013928 275 -SDPQIYKKGPAFGMPGFHV--DGMDVLKVREVAKEAIERARR-GEGPTLVECETYR 327 (434)
Q Consensus 275 -~~~d~~~~a~a~Gi~~~~V--dG~D~~av~~a~~~Al~~ar~-~~gP~lIev~t~R 327 (434)
...|+.++.++||..-... .-...+++.. +++.+.+ .+++.+|||++.+
T Consensus 484 I~~Wd~~~l~~afg~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~i~lIEv~lp~ 536 (557)
T COG3961 484 IQSWDYTALPEAFGAKNGEAKFRATTGEELAL----ALDVAFANNDRIRLIEVMLPV 536 (557)
T ss_pred ccccchhhhhhhcCCCCceEEEeecChHHHHH----HHHHHhcCCCceEEEEEecCc
Confidence 2467888889998754332 1112223333 4444443 4689999998754
No 130
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.34 E-value=2.4e-12 Score=130.39 Aligned_cols=153 Identities=24% Similarity=0.332 Sum_probs=114.5
Q ss_pred CCHHHHHHHHhcCCCCC------ccCCCCCccccc-------C--CCcccCCcccccccchhhHHHHHHHHHHHhhhhhc
Q 013928 157 VPARAVMSELFGKATGC------CRGQGGSMHMFS-------K--EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA 221 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~------~~G~ggs~h~~~-------~--~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~ 221 (434)
++|+.++.+|.....+. +.| .|..+||. + .+..+++.|.||+|+|+|+|+..|
T Consensus 472 ikPQ~vIk~Ldk~t~d~~~kviitTG-VGqHQMWAAqfy~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA----------- 539 (675)
T KOG4166|consen 472 IKPQYVIKVLDKLTDDTGRKVIITTG-VGQHQMWAAQFYNWKKPRQWLTSGGLGTMGFGLPAAIGASVA----------- 539 (675)
T ss_pred cChHHHHHHHHHhccCcCceEEEecc-ccHHHHHHHHHhcccCccceeecCCccccccCcchhhccccc-----------
Confidence 56777777776655542 112 22222321 1 233468899999999999999999
Q ss_pred CCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccc------------ccCchhhhccccCCCc
Q 013928 222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------------TSDPQIYKKGPAFGMP 289 (434)
Q Consensus 222 ~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~------------~~~~d~~~~a~a~Gi~ 289 (434)
+|+.+||-+-||++|.|. ..+|.++.+.++||-+++.||+ -.++.+++| ..+|++.++|.++|++
T Consensus 540 ~P~~iViDIDGDaSF~Mt--~~ELat~rq~~~PVKiLiLNNe-eqGMVtQWq~lFYe~rysHThQ~nPnf~klA~AmGik 616 (675)
T KOG4166|consen 540 NPDAIVIDIDGDASFIMT--VQELATIRQENLPVKILILNNE-EQGMVTQWQDLFYEARYSHTHQENPNFLKLAAAMGIK 616 (675)
T ss_pred CcccEEEeccCCceeeee--hHhhhhhhhcCCceEEEEecch-hhhhHHHHHHHHHHhhhccccccCccHHHHHHhcCCc
Confidence 899999999999999987 7899999999999999999996 444433322 1468999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 013928 290 GFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330 (434)
Q Consensus 290 ~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~g 330 (434)
..||.-. +++.+ +++.....+||+|+|+.+.....
T Consensus 617 alRV~K~--edL~~----k~keflsTkGPvLleV~v~~keh 651 (675)
T KOG4166|consen 617 ALRVTKK--EDLRE----KIKEFLSTKGPVLLEVIVPHKEH 651 (675)
T ss_pred hheeehH--HHHHH----HHHHHhCCCCCeEEEEEccCccc
Confidence 9999854 35555 55555678999999998865443
No 131
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.28 E-value=2.7e-11 Score=124.64 Aligned_cols=120 Identities=23% Similarity=0.314 Sum_probs=94.8
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC--ccC
Q 013928 189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL--WAI 266 (434)
Q Consensus 189 ~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~--y~i 266 (434)
.-.+.+|+||-|++.|+++|++ .|++.|+|+.||++|... .-++.|+++|+|||++||.||. |++
T Consensus 424 LDaGtfgTMGVG~Gfalaaa~~-----------~P~~~V~~veGDsaFGfS--aME~ET~vR~~Lpvv~vV~NN~Giyg~ 490 (571)
T KOG1185|consen 424 LDAGTFGTMGVGLGFALAAALA-----------APDRKVVCVEGDSAFGFS--AMELETFVRYKLPVVIVVGNNNGIYGL 490 (571)
T ss_pred cCCccccccccchhHHHHHHhh-----------CCCCeEEEEecCcccCcc--hhhHHHHHHhcCCeEEEEecCCccccc
Confidence 3468899999999999999999 799999999999999764 6689999999999888888663 333
Q ss_pred ccccccc---------------ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 267 GMSHLRA---------------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 267 s~~~~~~---------------~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
......+ ..+.++.+.+++||..++.|+ .++++..++++++ +.+++|++|.+..-
T Consensus 491 d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~---q~~~~psvINVlI~ 560 (571)
T KOG1185|consen 491 DDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQAC---QDTDKPSVINVLIG 560 (571)
T ss_pred CcccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHH---hcCCCCeEEEEEec
Confidence 2221111 123577889999999999998 5678888777765 45679999999763
No 132
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.28 E-value=5.1e-12 Score=150.74 Aligned_cols=118 Identities=20% Similarity=0.130 Sum_probs=91.7
Q ss_pred cCCcccccc--cchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHc--CCCeEEEEEcCC-cc
Q 013928 191 LGGFAFIGE--GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW--KLPIVFVVENNL-WA 265 (434)
Q Consensus 191 ~~~~g~lG~--glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~--~LPvI~VV~NN~-y~ 265 (434)
.++.|.||+ ++|.|+|+++| . +++|+|++|||+|++. .++|.+|+++ ++|+++||.||+ |+
T Consensus 755 ~~~~G~mG~~G~lpaAIGaala-----------~-~r~Vv~i~GDGsF~m~--~~EL~Ta~r~~~~lpi~iVV~NN~ggg 820 (1655)
T PLN02980 755 AGNRGASGIDGLLSTAIGFAVG-----------C-NKRVLCVVGDISFLHD--TNGLSILSQRIARKPMTILVINNHGGA 820 (1655)
T ss_pred EecCCccchhhhHHHHHHHhhc-----------C-CCCEEEEEehHHHHhh--hhHHHHhhcccCCCCEEEEEEeCCCcH
Confidence 467799999 59999999988 4 6789999999999987 7899999984 999888888886 33
Q ss_pred Cccc------ccc----c----ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928 266 IGMS------HLR----A----TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (434)
Q Consensus 266 is~~------~~~----~----~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~ 328 (434)
+-.. ... . ..++|+.+++++||+++.+|+. +.++..+++++ ...++|+||||.|.|-
T Consensus 821 i~~~l~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~~--~~eL~~aL~~a----~~~~~p~lIEV~t~~~ 891 (1655)
T PLN02980 821 IFSLLPIAKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVGT--KSELEDALFTS----QVEQMDCVVEVESSID 891 (1655)
T ss_pred hhhcCccCCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecCC--HHHHHHHHHHh----hccCCCEEEEEecChh
Confidence 3211 000 0 1347899999999999999984 55776655544 4568999999999653
No 133
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.18 E-value=1.5e-11 Score=123.36 Aligned_cols=202 Identities=19% Similarity=0.267 Sum_probs=120.6
Q ss_pred ecccccCCCChHHHHHHHHHhcCC--CCEEEccCcchHHH-HHcCCCHHHHHHHHhcCCCCCc----------cCCCC-C
Q 013928 115 MFGFVHLYNGQEAVSTGFIKLLKK--EDSVVSTYRDHVHA-LSKGVPARAVMSELFGKATGCC----------RGQGG-S 180 (434)
Q Consensus 115 ~~G~~h~~~GqEa~~~g~~~~L~~--~D~v~~~yR~~~~~-La~G~~~~~i~~el~g~~~g~~----------~G~gg-s 180 (434)
..|++.++.|+..+.+.+..++++ .|+++-.--||+.. +....-++..+.+++...+... .-.+| .
T Consensus 46 llGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~FS~PgGip 125 (379)
T PF09364_consen 46 LLGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQFSFPGGIP 125 (379)
T ss_dssp --S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHBTSTTSB-
T ss_pred cccccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhCCCCCCCc
Confidence 578888899999999999999886 56677777788753 2211122222222222211110 00122 5
Q ss_pred cccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCC-----C-
Q 013928 181 MHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKL-----P- 254 (434)
Q Consensus 181 ~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~L-----P- 254 (434)
.|......+.....|-||+++..|.|+++- +||.+|+|++|||++.+|. +|+.|+. |
T Consensus 126 SH~~p~tPGsIhEGGELGYaLshA~GA~~D-----------nPdliv~~vvGDGEaETGp------lA~sWh~~kflnP~ 188 (379)
T PF09364_consen 126 SHVSPETPGSIHEGGELGYALSHAFGAVFD-----------NPDLIVACVVGDGEAETGP------LAASWHSNKFLNPA 188 (379)
T ss_dssp SSS-TTSTT-S---SSTS-HHHHHHHHHTT------------TT-EEEEEEETTGGGSHH------HHHHGGGGGSS-TT
T ss_pred cccCcCCCCccCcCcchhhHHHHHhhcccC-----------CCCeEEEEEecCCcccCCc------ccccccccceeCcc
Confidence 677666566666678999999999999997 8999999999999999985 5555542 2
Q ss_pred ----eEEEEEcCCccCcccccccc-cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHH----HH-------ccC--
Q 013928 255 ----IVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIER----AR-------RGE-- 316 (434)
Q Consensus 255 ----vI~VV~NN~y~is~~~~~~~-~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~----ar-------~~~-- 316 (434)
|+=|+.=|+|.|+.++-..+ +..++.+.+++||+..+.|+|.|+.++...+..+++. .+ +++
T Consensus 189 ~dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~~ 268 (379)
T PF09364_consen 189 TDGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNPA 268 (379)
T ss_dssp TS-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS
T ss_pred cCceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 66677779999998875443 3467899999999999999999998887766555433 22 221
Q ss_pred -CC--EEEEEEEecCCCCCC
Q 013928 317 -GP--TLVECETYRFRGHSL 333 (434)
Q Consensus 317 -gP--~lIev~t~R~~gHs~ 333 (434)
+| -+|.++|.++++-+.
T Consensus 269 ~~prwPmivlRtPKGWtgP~ 288 (379)
T PF09364_consen 269 YRPRWPMIVLRTPKGWTGPK 288 (379)
T ss_dssp ----EEEEEEE--TTTTS-S
T ss_pred CCCCCcEEEEECCcccCCcc
Confidence 23 357788888877654
No 134
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=99.13 E-value=4.1e-10 Score=115.48 Aligned_cols=158 Identities=19% Similarity=0.279 Sum_probs=115.5
Q ss_pred CChHHHHHHHHHhcCCCCEEEcc---CcchHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccc
Q 013928 123 NGQEAVSTGFIKLLKKEDSVVST---YRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGE 199 (434)
Q Consensus 123 ~GqEa~~~g~~~~L~~~D~v~~~---yR~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~ 199 (434)
..|--+.-++...+.+++.|++. -.|-.+-|++ .+.-+++|+ .-++++||+
T Consensus 395 ptq~~vigav~~~~~~~svvvcAAGsLPGdLhkLW~-------------------~~~p~~YH~-------EYgfSCMGY 448 (617)
T COG3962 395 PTQTQVIGAVQRTISDDSVVVCAAGSLPGDLHKLWR-------------------AGVPGTYHL-------EYGFSCMGY 448 (617)
T ss_pred ccchhHHHHHHhhcCCCcEEEEeCCCCcHHHHHHhc-------------------cCCCCceee-------eeccccccc
Confidence 45544555677778888888874 2222222221 122345665 335789999
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccc--------
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL-------- 271 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~-------- 271 (434)
-+.-++|+++| .|++-|++++||||++|= +.+|.++..++..|++|+.+|. +++-+..
T Consensus 449 EiaG~lG~K~a-----------~pdreV~vmVGDGSymMl--nSEL~Tsv~~g~Ki~Vvl~DN~-GyGCIn~LQm~~Gg~ 514 (617)
T COG3962 449 EIAGGLGAKAA-----------EPDREVYVMVGDGSYMML--NSELATSVMLGKKIIVVLLDNR-GYGCINRLQMATGGA 514 (617)
T ss_pred ccccccccccC-----------CCCCeEEEEEcccchhhh--hHHHHHHHHcCCeEEEEEECCC-CcchhhhhhhhcCcc
Confidence 99999999987 788999999999999884 8999999999999888877764 3332211
Q ss_pred ------------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 272 ------------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 272 ------------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
......||++.+++||+..++|. ++.++.. |++.++...+++||+++|.
T Consensus 515 sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~a----AL~~Ak~~~~ttvi~I~t~ 575 (617)
T COG3962 515 SFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEA----ALADAKASDRTTVIVIDTD 575 (617)
T ss_pred hhhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHH----HHHHHHhCCCCEEEEEecC
Confidence 11345689999999999999997 5555554 6677788899999999874
No 135
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=99.05 E-value=3.5e-10 Score=112.03 Aligned_cols=157 Identities=22% Similarity=0.278 Sum_probs=121.4
Q ss_pred HHHHHhcCCCCCccCCCC-------CcccccCCCcc-cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCc
Q 013928 162 VMSELFGKATGCCRGQGG-------SMHMFSKEHNL-LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGD 233 (434)
Q Consensus 162 i~~el~g~~~g~~~G~gg-------s~h~~~~~~~~-~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GD 233 (434)
-|++.||++.-+...-|- ..|.+.+.+.+ .+..|++|+.+|+|+|+..| .|.+.++++.||
T Consensus 378 emn~~fgrd~~yvstiglsqia~aqflhv~~pr~wincgqagplgwtipaalgv~~a-----------dp~r~vvalsgd 446 (592)
T COG3960 378 EMNKAFGRDVCYVTTIGLSQIAAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAA-----------DPKRNVVAISGD 446 (592)
T ss_pred HHHhhcCCceeEEEeccHHHHhhhhhhhhcCCcceeecCccCCcccccchhhceeec-----------CCCCceEEeecC
Confidence 366678876654322221 24666666655 46679999999999999988 899999999999
Q ss_pred cccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccc----------------------cCchhhhccccCCCcEE
Q 013928 234 GTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT----------------------SDPQIYKKGPAFGMPGF 291 (434)
Q Consensus 234 Ga~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~----------------------~~~d~~~~a~a~Gi~~~ 291 (434)
=.|+. ..|+|...+++++|-|+|+.||.| ++...+.|+ ...|-.+.++++|++.+
T Consensus 447 ydfqf--mieelavgaq~k~pyihv~vnnay-lglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckai 523 (592)
T COG3960 447 YDFQF--LIEELAVGAQFKIPYIHVLVNNAY-LGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAI 523 (592)
T ss_pred chHHH--HHHHHhhhhcccCceEEEEecchH-HHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeE
Confidence 99986 489999999999999999999986 222222111 12456678899999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928 292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 334 (434)
Q Consensus 292 ~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~ 334 (434)
+|- ++.++..++.+|.....+..-|++||+..-|....++.
T Consensus 524 rv~--~p~e~a~af~~a~~lm~eh~vpvvve~ilervtnismg 564 (592)
T COG3960 524 RVF--KPEDIAPAFEQAKALMAQHRVPVVVEVILERVTNISMG 564 (592)
T ss_pred Eec--ChHHhhHHHHHHHHHHHhcCCCeeeehHHHHhhccccc
Confidence 997 56688899998888888889999999998887776654
No 136
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.85 E-value=6e-09 Score=108.32 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=87.3
Q ss_pred CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCcccc
Q 013928 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSH 270 (434)
Q Consensus 192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~ 270 (434)
..+|++|+.+|+++|+++| .++++|+.|+|||++++- .+++.++.+|+|| +||+++|++|.|..-.
T Consensus 412 ~~wgsIG~svga~lG~a~a-----------~~e~rvilfiGDGs~qlT--vQeiStmir~gl~~~if~~NN~GYTIE~~I 478 (561)
T KOG1184|consen 412 MQWGSIGWSVGATLGYAQA-----------APEKRVILFIGDGSFQLT--VQEISTMIRWGLKPIIFLINNGGYTIEVEI 478 (561)
T ss_pred EEEeeccccchhhhhhhhc-----------cCCceEEEEecCccceee--HHHHHHHHhcCCCcEEEEEeCCceEEEEee
Confidence 4468999999999999999 678999999999999986 8999999999999 6777777788776543
Q ss_pred ccc----ccCchhhhccccCCCcE-----EEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 271 LRA----TSDPQIYKKGPAFGMPG-----FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 271 ~~~----~~~~d~~~~a~a~Gi~~-----~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
+.. ..+.++.++.++||..- .+|- ...++..+.+.+.. ...+++.+|||+..
T Consensus 479 H~~~Yn~I~~Wd~~~l~~afg~~~gk~~~~~v~--~~~e~~~~~~~~~~--~~~~~i~liEv~l~ 539 (561)
T KOG1184|consen 479 HDGPYNDIQNWDYTALLEAFGAGEGKYETHKVR--TEEELVEAIKDATF--EKNDKIRLIEVILP 539 (561)
T ss_pred cCCCccccccchHHHHHHhhcCccceeEEeeec--cchHHHHHHhhhhh--cccCceEEEEEecC
Confidence 331 12467888888988643 2332 22355555554432 24578999999763
No 137
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.81 E-value=1.4e-07 Score=94.18 Aligned_cols=119 Identities=19% Similarity=0.152 Sum_probs=92.3
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccc-cccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT-CNNGQFFECLNMAALWKLPIVFVVENNL-WAIGM 268 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa-~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~ 268 (434)
....+..|-..++|.|+.+| .++..||++.|||. +..| ...|.-+.+.+.+|++||.||+ |+.+.
T Consensus 66 ~~~hs~~gra~a~atGik~A-----------~~~l~Viv~gGDG~~~dIG--~~~l~h~~~Rn~dit~iv~DNevYgnTg 132 (294)
T COG1013 66 PWVHSLHGRAAAVATGIKLA-----------NPALSVIVIGGDGDAYDIG--GNHLIHALRRNHDITYIVVDNEVYGNTG 132 (294)
T ss_pred CceeeccCcchhhHHHHHHh-----------ccCCeEEEEecchhHhhhh--hHHHHHHHHcCCCeEEEEECCeecccCC
Confidence 44566778999999999999 56778999999995 5688 8899999999999999999996 54433
Q ss_pred cccccc-----------------cCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 269 SHLRAT-----------------SDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 269 ~~~~~~-----------------~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
.+...+ ...|+..++.++|.+++ ++.--++.++.+.+++|+ +.+||.||++.+.
T Consensus 133 gQ~S~tTp~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~----~~~Gps~I~v~sP 204 (294)
T COG1013 133 GQASPTTPKGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAA----EHKGPSFIDVLSP 204 (294)
T ss_pred CccCCCCCCCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHH----hccCCeEEEEecC
Confidence 221111 12378888999999876 777777888888777666 4569999999753
No 138
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=98.52 E-value=4.7e-06 Score=85.01 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=72.7
Q ss_pred ceEEEEeCcccc-ccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccccc----------------ccccCchhhhccccC
Q 013928 225 HVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL----------------RATSDPQIYKKGPAF 286 (434)
Q Consensus 225 ~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~----------------~~~~~~d~~~~a~a~ 286 (434)
..||++.|||.. ..| ...|.-+...+.+|++||.||. |+.+..+. ......|+..++.++
T Consensus 152 ~~v~v~gGDG~~ydIG--~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIG--YGGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccc--hhhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 579999999965 688 7889889999999988888886 55432111 011235788889999
Q ss_pred CCcEE-EEeC-CCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 287 GMPGF-HVDG-MDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 287 Gi~~~-~VdG-~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
|.+++ ++.- .++.++.+++++|+ +.+||.+|++.+.-
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~----~~~Gps~I~v~sPC 268 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAE----AYDGPSLIIAYSPC 268 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHh----cCCCCEEEEEEccC
Confidence 99877 6654 48888888777766 46899999997643
No 139
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.27 E-value=9.5e-07 Score=95.05 Aligned_cols=172 Identities=18% Similarity=0.222 Sum_probs=117.0
Q ss_pred eecccccCCCChHHHHHHHHHhcCCCC--EEEccCcchHHH-HHcCCCHHHH--------------HHHHhcCCCCCccC
Q 013928 114 KMFGFVHLYNGQEAVSTGFIKLLKKED--SVVSTYRDHVHA-LSKGVPARAV--------------MSELFGKATGCCRG 176 (434)
Q Consensus 114 k~~G~~h~~~GqEa~~~g~~~~L~~~D--~v~~~yR~~~~~-La~G~~~~~i--------------~~el~g~~~g~~~G 176 (434)
+..|++.++.|+--+.+....++++-| +++-.-.||+.. +..+..++.. |.+|+.+-.-+ .
T Consensus 58 r~lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs~P-g- 135 (793)
T COG3957 58 RLLGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFSFP-G- 135 (793)
T ss_pred hhcccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhccCC-C-
Confidence 346888889999999999988888644 444455567643 2111111111 33333332211 1
Q ss_pred CCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHH----HcC
Q 013928 177 QGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAA----LWK 252 (434)
Q Consensus 177 ~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~----~~~ 252 (434)
|-..|+.....+.....|.||+++..|.|+++- +||.++.|++|||....|. +.++. -++
T Consensus 136 -Gi~SH~~petPGsIhEGGeLGy~l~ha~gAa~d-----------~Pdli~~~vvGDGeaetgp----latsWhs~kf~n 199 (793)
T COG3957 136 -GIGSHVAPETPGSIHEGGELGYALSHAYGAAFD-----------NPDLIVACVVGDGEAETGP----LATSWHSNKFLN 199 (793)
T ss_pred -CcccccCCCCCCccCcCcchhHHHHHHHHhhcC-----------CCCcEEEEEecccccccCc----cccccccccccC
Confidence 225677766667777789999999999999987 8999999999999777664 22221 122
Q ss_pred CC----eEEEEEcCCccCcccccccc-cCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 253 LP----IVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 253 LP----vI~VV~NN~y~is~~~~~~~-~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
.+ ++=|..=|+|.|+-++.-.+ +..++...+++||+.-+.|+|.|+.++..
T Consensus 200 p~~dGavLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq 255 (793)
T COG3957 200 PARDGAVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQ 255 (793)
T ss_pred ccccCceeeEEEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhh
Confidence 22 66677779999987765444 34678899999999999999988887443
No 140
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.00 E-value=3.3e-05 Score=82.89 Aligned_cols=120 Identities=26% Similarity=0.284 Sum_probs=87.5
Q ss_pred CCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCCeEEEEEcCCcc
Q 013928 187 EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLWA 265 (434)
Q Consensus 187 ~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvI~VV~NN~y~ 265 (434)
+++....+-.||.++++|-|+.++ . .+++|+++|||.|. .| ..+|..|..-+.+++++|.+|.+.
T Consensus 420 P~~~~d~t~~mGssig~a~g~~~~-----------~-~k~~va~iGDsTF~HsG--i~~l~nAV~n~~~~~~vvLdN~~t 485 (640)
T COG4231 420 PLNTVDTTTMMGSSIGIAGGLSFA-----------S-TKKIVAVIGDSTFFHSG--ILALINAVYNKANILVVVLDNRTT 485 (640)
T ss_pred Ccchhhhhhhccchhhhccccccc-----------c-CCceEEEeccccccccC--cHHHHHHHhcCCCeEEEEEeccch
Confidence 344445556788899999999987 2 37899999999986 66 667999999999999998888754
Q ss_pred Ccccccc-c----------ccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEE
Q 013928 266 IGMSHLR-A----------TSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECE 324 (434)
Q Consensus 266 is~~~~~-~----------~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~ 324 (434)
--|-.+. . ....++.+..++.|+..+ +||-.|+.++.+++++| ++..+|.+|.++
T Consensus 486 AMTGgQp~pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~kea----le~~gpsViiak 552 (640)
T COG4231 486 AMTGGQPHPGTGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEA----LEVPGPSVIIAK 552 (640)
T ss_pred hccCCCCCCCcccccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHH----hcCCCceEEEEc
Confidence 3221110 0 112467788999999877 55657777777766655 467889999774
No 141
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=97.42 E-value=0.00024 Score=75.54 Aligned_cols=110 Identities=24% Similarity=0.250 Sum_probs=73.7
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCcc--cc------
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGM--SH------ 270 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~--~~------ 270 (434)
.++.|+|++.| ..+.++.++||=|+-.- ...|-+......| +|+|++||+=+|-- +.
T Consensus 427 ~vSTA~Gi~~a------------~~~ptv~liGDLS~lhD--~NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~ 492 (566)
T COG1165 427 TVSTALGIARA------------TQKPTVALIGDLSFLHD--LNGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPV 492 (566)
T ss_pred hHHHHhhhhhh------------cCCceEEEEechhhhhc--cchHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcch
Confidence 36779999987 24569999999998532 2246666677777 56666677645421 11
Q ss_pred -ccc--c-cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 013928 271 -LRA--T-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (434)
Q Consensus 271 -~~~--~-~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~ 329 (434)
+.. + ..-||...++.||+.+.+++.- .++.. +++.+-...|-+|||++|.|-.
T Consensus 493 fe~~F~tPh~ldF~~la~~y~l~y~~~~s~--~~l~~----~~~~~~~~~g~~viEvkt~r~~ 549 (566)
T COG1165 493 FERLFGTPHGLDFAHLAATYGLEYHRPQSW--DELGE----ALDQAWRRSGTTVIEVKTDRSD 549 (566)
T ss_pred HHHhcCCCCCCCHHHHHHHhCccccccCcH--HHHHH----HHhhhccCCCcEEEEEecChhH
Confidence 011 1 2458999999999999998854 34444 5555545567899999997643
No 142
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.37 E-value=0.0012 Score=77.19 Aligned_cols=97 Identities=16% Similarity=0.176 Sum_probs=72.6
Q ss_pred ceEEEEeCcccc-ccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccccc----------------ccccCchhhhccccC
Q 013928 225 HVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL----------------RATSDPQIYKKGPAF 286 (434)
Q Consensus 225 ~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~----------------~~~~~~d~~~~a~a~ 286 (434)
..||++.|||.. ..| ...|.-+...+.+|.+||.||. |+.+..+. ......|+..++.++
T Consensus 952 ~sv~~~~GDG~~~diG--~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIG--YGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccC--ccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 469999999965 588 7789999999999999998886 44432110 011235788889999
Q ss_pred CCcEE-EEe-CCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 287 GMPGF-HVD-GMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 287 Gi~~~-~Vd-G~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
|.+++ ++. |.++.++.+++++|+ +.+||.+|++.+.-
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~----~~~G~s~i~~~~pC 1068 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAE----AYDGPSIVIAYSPC 1068 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHH----cCCCCEEEEEECCC
Confidence 99877 776 568888888777665 57899999997653
No 143
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.34 E-value=0.0008 Score=78.11 Aligned_cols=120 Identities=17% Similarity=0.088 Sum_probs=80.4
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCCeEEEEEcCCc-cCcc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLW-AIGM 268 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~ 268 (434)
...+..||.....++|.+.+ ..++.||+++|||.|. .| .-+|.-|..-+.+++++|.+|.. +++.
T Consensus 464 ~~~~~~MG~~g~~~~G~a~~-----------~~~~~v~a~iGDgTf~HSG--~~al~~AV~~~~nit~~IL~N~~tAMTG 530 (1159)
T PRK13030 464 TTGLTQMGGEGVDWIGHAPF-----------TETKHVFQNLGDGTYFHSG--SLAIRQAVAAGANITYKILYNDAVAMTG 530 (1159)
T ss_pred cceeeccCccchhhceeccc-----------cCCCCEEEEeccchhhhcC--HHHHHHHHhcCCCeEEEEEeCCcccccC
Confidence 44567899999999999987 3356799999999986 77 55899999999999888888873 2222
Q ss_pred cccccccCchhhh---ccccCCCcEEEEeCCCHHH-----HH--------HHHHHHHHHHHccCCCEEEEEE
Q 013928 269 SHLRATSDPQIYK---KGPAFGMPGFHVDGMDVLK-----VR--------EVAKEAIERARRGEGPTLVECE 324 (434)
Q Consensus 269 ~~~~~~~~~d~~~---~a~a~Gi~~~~VdG~D~~a-----v~--------~a~~~Al~~ar~~~gP~lIev~ 324 (434)
.+ ......++.+ ..++.|+..+.|-..|+.. +. +.+....+..++.+|+++|...
T Consensus 531 gQ-p~~g~i~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~~~~GvsViI~~ 601 (1159)
T PRK13030 531 GQ-PVDGSISVPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELRETPGVTVLIYD 601 (1159)
T ss_pred CC-CCCCCCCHHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence 11 1111234444 7779999888765455544 22 2222222223367789888763
No 144
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=97.19 E-value=0.0019 Score=75.02 Aligned_cols=120 Identities=21% Similarity=0.135 Sum_probs=84.9
Q ss_pred CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCCeEEEEEcCCc-cCccc
Q 013928 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLW-AIGMS 269 (434)
Q Consensus 192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~ 269 (434)
..+..||.....++|.+.+ ..++.||+++|||.|. .| .-+|.-|..-+.+++++|..|.. +++..
T Consensus 478 ~~~~~MG~eg~~~~G~a~f-----------~~~~hv~a~iGDgTffHSG--~~al~~AV~~~~nit~~IL~N~~vAMTGg 544 (1165)
T PRK09193 478 STFTQMGGEGVPWIGQAPF-----------TDEKHVFQNLGDGTYFHSG--LLAIRAAVAAGVNITYKILYNDAVAMTGG 544 (1165)
T ss_pred CeeeccCCcchhhceeccc-----------cCCCcEEEEeccccchhcC--HHHHHHHHhcCCCeEEEEEeCCcccccCC
Confidence 5567899999999998876 3356799999999985 77 66799999999998888887762 33322
Q ss_pred cc--ccccCchhhhccccCCCcEEEEeCCCHHHHHHH--------------HHHHHHHHHccCCCEEEEEE
Q 013928 270 HL--RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV--------------AKEAIERARRGEGPTLVECE 324 (434)
Q Consensus 270 ~~--~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a--------------~~~Al~~ar~~~gP~lIev~ 324 (434)
+. ...+..++....++.|+.-+.|-..|+...... ++...+..|+..|+++|...
T Consensus 545 Q~~~g~~~~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~~ 615 (1165)
T PRK09193 545 QPVDGGLSVPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIYD 615 (1165)
T ss_pred CCCCCCcchhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence 11 112346788889999998887765666655333 33333333467889888763
No 145
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.95 E-value=0.003 Score=73.34 Aligned_cols=120 Identities=19% Similarity=0.132 Sum_probs=79.6
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCCeEEEEEcCCc-cCcc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLW-AIGM 268 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~ 268 (434)
..++..||......+|.+-+ ..++.||+++|||.|. .| .-+|..|..-+.+++++|.+|.. +++.
T Consensus 491 ~~~~~~MGgeg~~~~G~a~f-----------~~~~hv~aniGDgTffHSG--~~alr~AV~~~~nit~kIL~N~avAMTG 557 (1186)
T PRK13029 491 TEGFSQMGGEGVAWIGQMPF-----------SRRRHVFQNLGDGTYFHSG--LLAIRQAIAAGVNITYKILYNDAVAMTG 557 (1186)
T ss_pred cceeeccCcchhhheeeccc-----------CCCCCEEEEeccccchhcC--HHHHHHHHhcCCCEEEEEEeCcchhccC
Confidence 34567899999999998877 3356799999999986 67 66799999999998888887762 3322
Q ss_pred ccc--ccccCchhhhccccCCCcEEEEeCCCHHHHH--------------HHHHHHHHHHHccCCCEEEEE
Q 013928 269 SHL--RATSDPQIYKKGPAFGMPGFHVDGMDVLKVR--------------EVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 269 ~~~--~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~--------------~a~~~Al~~ar~~~gP~lIev 323 (434)
.+. .....+.+....++.|+.-+.|-.+|+..+. +.+....+..|+.+|+++|..
T Consensus 558 gQp~~G~~~v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~ 628 (1186)
T PRK13029 558 GQPVDGVLTVPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIY 628 (1186)
T ss_pred CCCCCCcCCHHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 111 1111234444779999987766444454442 333333333346788888876
No 146
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=96.21 E-value=0.037 Score=48.98 Aligned_cols=105 Identities=18% Similarity=0.118 Sum_probs=64.5
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEEEe-CccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCch
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFF-GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ 278 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~-GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d 278 (434)
...+|.|++++ +. ..+++.. |.|..+. .+.+..|...++|+|+|+-..+.........+ ..+
T Consensus 47 a~~~A~G~a~~-----------~~-~~v~~~~~gpg~~~~---~~~l~~a~~~~~Pvl~i~~~~~~~~~~~~~~q--~~~ 109 (154)
T cd06586 47 AAGAAAGYARA-----------GG-PPVVIVTSGTGLLNA---INGLADAAAEHLPVVFLIGARGISAQAKQTFQ--SMF 109 (154)
T ss_pred HHHHHHHHHHh-----------hC-CEEEEEcCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCChhhhccCccc--ccC
Confidence 34556677666 22 3333333 8887643 67888888999999999966552211111111 223
Q ss_pred hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 279 ~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
....++.+..-...+ +++.++.+.+.+|++.+....||++|++
T Consensus 110 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 110 DLGMYRSIPEANISS--PSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred HHHHHHHhhheEEEe--CCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 334445443333344 5667788888889888877789999986
No 147
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.15 E-value=0.055 Score=49.48 Aligned_cols=93 Identities=14% Similarity=0.003 Sum_probs=65.3
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
-.++++..|=|.++. .-++..|..-++|+|+|.-+.....-. .......|..++++.+--...+|+ ++.++.+
T Consensus 64 ~~v~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~~~~~~tk~~~~v~--~~~~~~~ 136 (164)
T cd07039 64 LGVCLGSSGPGAIHL---LNGLYDAKRDRAPVLAIAGQVPTDELG--TDYFQEVDLLALFKDVAVYNETVT--SPEQLPE 136 (164)
T ss_pred CEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCcccccC--CCCCcccCHHHHHHHhhcEEEEeC--CHHHHHH
Confidence 345666668887764 558889999999999998655422111 111112355666666666666776 6678889
Q ss_pred HHHHHHHHHHccCCCEEEEE
Q 013928 304 VAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 304 a~~~Al~~ar~~~gP~lIev 323 (434)
++++|++.+....||+.|++
T Consensus 137 ~i~~A~~~a~~~~GPV~l~i 156 (164)
T cd07039 137 LLDRAIRTAIAKRGVAVLIL 156 (164)
T ss_pred HHHHHHHHHhcCCCCEEEEe
Confidence 99999998888889999998
No 148
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.00 E-value=0.052 Score=49.66 Aligned_cols=93 Identities=16% Similarity=0.101 Sum_probs=63.2
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHH
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA 305 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~ 305 (434)
++++..|=|.++. .-+|..|...+.|+|+|+-.-...... ........|...+++.+.....++. ++.++..++
T Consensus 67 v~~~~~GpG~~n~---~~~l~~A~~~~~Pvl~i~g~~~~~~~~-~~~~q~~~d~~~~~~~~~k~~~~v~--~~~~~~~~~ 140 (172)
T PF02776_consen 67 VVIVTSGPGATNA---LTGLANAYADRIPVLVITGQRPSAGEG-RGAFQQEIDQQSLFRPVTKWSYRVT--SPDDLPEAL 140 (172)
T ss_dssp EEEEETTHHHHTT---HHHHHHHHHTT-EEEEEEEESSGGGTT-TTSTTSSTHHHHHHGGGSSEEEEEC--SGGGHHHHH
T ss_pred EEEeecccchHHH---HHHHhhcccceeeEEEEecccchhhhc-ccccccchhhcchhccccchhcccC--CHHHHHHHH
Confidence 4444456666553 557888899999999988765422221 1111213466777888887788887 455888889
Q ss_pred HHHHHHH-HccCCCEEEEEE
Q 013928 306 KEAIERA-RRGEGPTLVECE 324 (434)
Q Consensus 306 ~~Al~~a-r~~~gP~lIev~ 324 (434)
++|++.+ ....+|+.|++-
T Consensus 141 ~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 141 DRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp HHHHHHHHHCSTSEEEEEEE
T ss_pred HHHHHHhccCCCccEEEEcC
Confidence 9999988 667899999984
No 149
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=95.86 E-value=0.09 Score=46.91 Aligned_cols=89 Identities=18% Similarity=0.126 Sum_probs=57.7
Q ss_pred EEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHH
Q 013928 228 LAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKE 307 (434)
Q Consensus 228 v~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~ 307 (434)
++..|=|.++. ..+|..|...++|+|+|.-+....-......| ..|....++.+-....+++ ++.++.+.+.+
T Consensus 64 ~~~~gpG~~n~---~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~~q--~~d~~~~~~~~~~~~~~i~--~~~~~~~~i~~ 136 (155)
T cd07035 64 LVTSGPGLTNA---VTGLANAYLDSIPLLVITGQRPTAGEGRGAFQ--EIDQVALFRPITKWAYRVT--SPEEIPEALRR 136 (155)
T ss_pred EEcCCCcHHHH---HHHHHHHHhhCCCEEEEeCCCccccccCCccc--ccCHHHHHHHHhceEEEcC--CHHHHHHHHHH
Confidence 33335665543 67899999999999999865441111111111 1344444444444455664 67799999999
Q ss_pred HHHHHHcc-CCCEEEEE
Q 013928 308 AIERARRG-EGPTLVEC 323 (434)
Q Consensus 308 Al~~ar~~-~gP~lIev 323 (434)
|++.+... ++|+.|++
T Consensus 137 A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 137 AFRIALSGRPGPVALDL 153 (155)
T ss_pred HHHHhcCCCCCcEEEEe
Confidence 99999877 79999986
No 150
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.70 E-value=0.13 Score=46.78 Aligned_cols=108 Identities=13% Similarity=0.125 Sum_probs=67.8
Q ss_pred cccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHH-HcCCCeEEEEEcCCccCcccccccccC
Q 013928 198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAA-LWKLPIVFVVENNLWAIGMSHLRATSD 276 (434)
Q Consensus 198 G~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~-~~~LPvI~VV~NN~y~is~~~~~~~~~ 276 (434)
+.+..+|.|..++ ..+.++|+.+=|-. ...-.|..|. ..+.|+|+|+-.-+. .+.....+...
T Consensus 44 e~aa~~aAg~~~~------------~~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg~-~~~~~~~q~~~ 107 (157)
T TIGR03845 44 EEGVGICAGAYLA------------GKKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRGV-YKEKIPAQIPM 107 (157)
T ss_pred HHHHHHHHHHHHh------------cCCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccCC-CCCCCccccch
Confidence 4445556665544 34567888877733 3577888888 999999999944431 11111111111
Q ss_pred chhh-hccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEE
Q 013928 277 PQIY-KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECE 324 (434)
Q Consensus 277 ~d~~-~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~ 324 (434)
..+. ......+++...++ +++++ .++.+|++.+.+.++|+.|-+.
T Consensus 108 g~~~~~~l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 108 GRATPKLLDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred hhhhHHHHHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 1111 11234566778886 47788 9999999999999999998763
No 151
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=95.52 E-value=0.11 Score=47.38 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=61.6
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc-Ccccc-ccc-c--cC-chhhhccccCCCcEEEEeCCCHH
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSH-LRA-T--SD-PQIYKKGPAFGMPGFHVDGMDVL 299 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~-is~~~-~~~-~--~~-~d~~~~a~a~Gi~~~~VdG~D~~ 299 (434)
++++..|=|.++. .-+|..|..-+.|+|+|+-+.... .+... ..+ . .. .|...+++.+--...+|. ++.
T Consensus 62 v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~--~~~ 136 (162)
T cd07038 62 ALVTTYGVGELSA---LNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLT--DPE 136 (162)
T ss_pred EEEEcCCccHHHH---HHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeC--CHH
Confidence 3344447776663 558888999999999998654311 11100 000 0 01 134566666666666775 667
Q ss_pred HHHHHHHHHHHHHHccCCCEEEEE
Q 013928 300 KVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 300 av~~a~~~Al~~ar~~~gP~lIev 323 (434)
++...+++|++.+..++||+.|++
T Consensus 137 ~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 137 NAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEc
Confidence 888999999999998889999987
No 152
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=95.34 E-value=0.15 Score=45.84 Aligned_cols=91 Identities=27% Similarity=0.228 Sum_probs=60.0
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc-CcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~-is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a 304 (434)
+++...|-|..+. ...|-.|...+.|+|+|+-+.... .+.+...+ ...+....++. .+...++. ++.++.+.
T Consensus 67 v~~~~~gpG~~n~---~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~--~~~~~~~~ 139 (160)
T cd07034 67 AMTATSGPGLNLM---AEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQ-SDLMAARYGGH-PWPVLAPS--SVQEAFDL 139 (160)
T ss_pred EEEeeCcchHHHH---HHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCc-HHHHHHHhCCC-CEEEEeCC--CHHHHHHH
Confidence 6677778888764 567888888899999998654321 11100011 11223333333 35555554 78899999
Q ss_pred HHHHHHHHHccCCCEEEEE
Q 013928 305 AKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 305 ~~~Al~~ar~~~gP~lIev 323 (434)
+++|++.++.+++|++|..
T Consensus 140 ~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 140 ALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred HHHHHHHHHHhCCCEEEEc
Confidence 9999999999889999865
No 153
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=94.26 E-value=0.28 Score=50.92 Aligned_cols=167 Identities=18% Similarity=0.183 Sum_probs=100.9
Q ss_pred CCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccc
Q 013928 122 YNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGI 201 (434)
Q Consensus 122 ~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~gl 201 (434)
-.|.||++-|+..+= =| ++..|- ++|..-+.|.+.+.... .++.+.-.. .=-..+
T Consensus 7 ~~GNeAiA~ga~~ag--~~-~~a~YP---------ITPsTei~e~la~~~~~---~~~~~vq~E----------~E~aA~ 61 (376)
T PRK08659 7 LQGNEACAEGAIAAG--CR-FFAGYP---------ITPSTEIAEVMARELPK---VGGVFIQME----------DEIASM 61 (376)
T ss_pred eehHHHHHHHHHHhC--CC-EEEEcC---------CCChHHHHHHHHHhhhh---hCCEEEEeC----------chHHHH
Confidence 389999877654431 23 555665 35555555554432111 011110000 112346
Q ss_pred hhhHHHHHHHHHHHhhhhhcCCCceEEEE-eCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCch
Q 013928 202 PVATGAAFTSKYRREVLKEADCDHVTLAF-FGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQ 278 (434)
Q Consensus 202 p~AvGaA~A~k~~~~~~~~~~~d~~vv~~-~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d 278 (434)
.+|+|+++| +.++++. .|-|=..| +|.+.+++-..+|+|+++.+.. +-+ .++.......+
T Consensus 62 ~~a~GAs~a-------------G~Ra~TaTSg~Gl~lm---~E~~~~a~~~e~P~Viv~~~R~-gp~tg~p~~~~q~D~~ 124 (376)
T PRK08659 62 AAVIGASWA-------------GAKAMTATSGPGFSLM---QENIGYAAMTETPCVIVNVQRG-GPSTGQPTKPAQGDMM 124 (376)
T ss_pred HHHHhHHhh-------------CCCeEeecCCCcHHHH---HHHHHHHHHcCCCEEEEEeecC-CCCCCCCCCcCcHHHH
Confidence 778899988 3344444 45554445 8899999999999888887765 332 23222211222
Q ss_pred hhhccccCC-CcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCC
Q 013928 279 IYKKGPAFG-MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL 333 (434)
Q Consensus 279 ~~~~a~a~G-i~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~ 333 (434)
. .+..++| .+.+.+.-.|+.++++....|++.+.+.+-|++|-..++ -+|+.
T Consensus 125 ~-~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~ 177 (376)
T PRK08659 125 Q-ARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMR 177 (376)
T ss_pred H-HhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCc
Confidence 2 2333444 455677778999999999999999988889999998883 66764
No 154
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=94.17 E-value=0.29 Score=50.38 Aligned_cols=114 Identities=19% Similarity=0.146 Sum_probs=79.4
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchh
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 279 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~ 279 (434)
.+.+|+|++++ +.++++.+-++++.- .+|.|.+|+-..+|+++++.+-. +-++.. .+....|.
T Consensus 60 A~~~a~GAs~a-------------G~Ra~taTSg~Gl~l--m~E~l~~a~~~e~P~v~v~v~R~-~p~~g~-t~~eq~D~ 122 (352)
T PRK07119 60 AINMVYGAAAT-------------GKRVMTSSSSPGISL--KQEGISYLAGAELPCVIVNIMRG-GPGLGN-IQPSQGDY 122 (352)
T ss_pred HHHHHHHHHhh-------------CCCEEeecCcchHHH--HHHHHHHHHHccCCEEEEEeccC-CCCCCC-CcchhHHH
Confidence 46778999988 556788887777764 28999999999999888877754 332211 12111233
Q ss_pred h--hccccCC-CcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCC
Q 013928 280 Y--KKGPAFG-MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 332 (434)
Q Consensus 280 ~--~~a~a~G-i~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs 332 (434)
. .+..++| .+.+...-.|+.++++-...|++-+.+.+-|+++-..++ -+|+
T Consensus 123 ~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~ 176 (352)
T PRK07119 123 FQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQM 176 (352)
T ss_pred HHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCc
Confidence 2 1222322 345566777999999999999999988889999998884 3665
No 155
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=94.15 E-value=0.29 Score=44.82 Aligned_cols=95 Identities=9% Similarity=0.034 Sum_probs=57.1
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCC----HHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMD----VLK 300 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D----~~a 300 (434)
.++++..|=|.++. .-++..|..-+.|+|+|+-+-..........| ..|....++.+--...+|...+ ...
T Consensus 62 gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~l~~~vtk~~~~v~~~~~~~~~~~ 136 (162)
T cd07037 62 VAVVCTSGTAVANL---LPAVVEAYYSGVPLLVLTADRPPELRGTGANQ--TIDQVGLFGDYVRWSVDLPPPEDDDDLWY 136 (162)
T ss_pred EEEEECCchHHHHH---hHHHHHHHhcCCCEEEEECCCCHHhcCCCCCc--ccchhhhccceeeEEEecCCcccchhHHH
Confidence 34555557777663 56888999999999999865431111111111 1244445554444445554221 122
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEE
Q 013928 301 VREVAKEAIERARRGE-GPTLVECE 324 (434)
Q Consensus 301 v~~a~~~Al~~ar~~~-gP~lIev~ 324 (434)
+.+.+++|+..++.+. ||++|++-
T Consensus 137 ~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 137 LLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEecc
Confidence 6778888888888764 99999873
No 156
>PRK08611 pyruvate oxidase; Provisional
Probab=92.93 E-value=0.79 Score=50.08 Aligned_cols=94 Identities=14% Similarity=0.121 Sum_probs=64.8
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
-.++++..|=|.++. .-++..|..-+.|+|+|.-.-..........| ..|...+++.+-....+|+ ++.++..
T Consensus 69 ~gv~~~t~GPG~~N~---l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~~q--~~d~~~l~~~itk~~~~v~--~~~~~~~ 141 (576)
T PRK08611 69 IGVCLSIGGPGAIHL---LNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQ--EVNLEKMFEDVAVYNHQIM--SAENLPE 141 (576)
T ss_pred ceEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCcccccCCCCcc--ccCHHHHhhcccceeEEeC--CHHHHHH
Confidence 345666668888874 45788999999999999865432211111111 2355666666655555665 6778889
Q ss_pred HHHHHHHHHHccCCCEEEEEE
Q 013928 304 VAKEAIERARRGEGPTLVECE 324 (434)
Q Consensus 304 a~~~Al~~ar~~~gP~lIev~ 324 (434)
++.+|+..+....||+.|++-
T Consensus 142 ~l~~A~~~A~~~~GPV~l~iP 162 (576)
T PRK08611 142 IVNQAIRTAYEKKGVAVLTIP 162 (576)
T ss_pred HHHHHHHHHhhCCCCEEEEeC
Confidence 999999888888899999984
No 157
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=92.71 E-value=0.38 Score=49.73 Aligned_cols=114 Identities=13% Similarity=0.129 Sum_probs=71.6
Q ss_pred ccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCcccccc-chHHHHHHHHHHcCCCeEEEEEcCCccCcccccccc-
Q 013928 197 IGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNN-GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT- 274 (434)
Q Consensus 197 lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~-G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~- 274 (434)
=|.++++|.|+.+| +.++.++++=-.++.. -...-+|.....|++|++++|-.-++ .+.....|.
T Consensus 35 E~~av~iaaG~~la------------tG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~-~g~~depqh~ 101 (361)
T TIGR03297 35 EGAAVGLAAGAYLA------------TGKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGE-PGVHDEPQHV 101 (361)
T ss_pred chHHHHHHHHHHHh------------cCCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCC-CCCCCCchhh
Confidence 47788899999988 2344455542222211 00122333356799999999876652 222211221
Q ss_pred -cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEE
Q 013928 275 -SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECE 324 (434)
Q Consensus 275 -~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~ 324 (434)
...-...+.+++|+++..++. +..+....+..|++.+.+.++|+.|-+.
T Consensus 102 ~~G~~t~~lL~~~~i~~~~~~~-~~~~~~~~~~~a~~~~~~~~~p~a~l~~ 151 (361)
T TIGR03297 102 KQGRITLSLLDALEIPWEVLST-DNDEALAQIERALAHALATSRPYALVVR 151 (361)
T ss_pred HHhHHHHHHHHHcCCCEEECCC-ChHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 122234567789999999953 4457778889999999999999888773
No 158
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=92.21 E-value=0.69 Score=50.57 Aligned_cols=111 Identities=20% Similarity=0.227 Sum_probs=74.4
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEE-EeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCch
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLA-FFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ 278 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~-~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d 278 (434)
.+.+|+|+++| +.++++ ..|-|=.-+ .|.|.+|.-..+|+|+++.|.. +.++....+....|
T Consensus 249 A~~~a~GAs~a-------------G~Ra~taTSg~Gl~lm---~E~l~~a~~~~~P~Vi~~~~R~-gpstg~~t~~eq~D 311 (562)
T TIGR03710 249 AINMAIGASYA-------------GARAMTATSGPGFALM---TEALGLAGMTETPLVIVDVQRG-GPSTGLPTKTEQSD 311 (562)
T ss_pred HHHHHHhHHhc-------------CCceeecCCCCChhHh---HHHHhHHHhccCCEEEEEcccC-CCCCCCCCCccHHH
Confidence 46778888888 333444 444443334 8999999999999888887776 55442111111123
Q ss_pred h-hhccccCC-CcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 279 I-YKKGPAFG-MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 279 ~-~~~a~a~G-i~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
+ ..+.-++| .+.+.+...|+.++++...+|++.+.+..-|+++-...+.
T Consensus 312 ~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l 362 (562)
T TIGR03710 312 LLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL 362 (562)
T ss_pred HHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH
Confidence 2 22333222 3445666779999999999999999999999999998874
No 159
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=91.87 E-value=1.2 Score=46.58 Aligned_cols=111 Identities=16% Similarity=0.098 Sum_probs=73.0
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchh
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 279 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~ 279 (434)
.+.+|+|+++| +.++++.+-=++++- .+|.|.+|+-..+|+|+++.|-. ..++........|+
T Consensus 61 A~~~aiGAs~a-------------GaRa~TaTSg~Gl~l--m~E~l~~aa~~~lPiVi~~~~R~--~p~~~~~~~~q~D~ 123 (390)
T PRK08366 61 AMAACIGASAA-------------GARAFTATSAQGLAL--MHEMLHWAAGARLPIVMVDVNRA--MAPPWSVWDDQTDS 123 (390)
T ss_pred HHHHHHHHHhh-------------CCCeEeeeCcccHHH--HhhHHHHHHhcCCCEEEEEeccC--CCCCCCCcchhhHH
Confidence 46778999988 344555554444442 28999999999999888877553 22222211111232
Q ss_pred hhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 013928 280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330 (434)
Q Consensus 280 ~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~g 330 (434)
.. ..--|| +..-..|+.++++-...|++.+.+..-|+++-...++...
T Consensus 124 ~~-~~d~g~--i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh 171 (390)
T PRK08366 124 LA-QRDTGW--MQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSH 171 (390)
T ss_pred HH-HhhcCE--EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCccccc
Confidence 21 122255 4444578999999999999999989999999987776543
No 160
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=91.86 E-value=1 Score=48.88 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=64.5
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a 304 (434)
.++++..|=|.++. .-++..|..-+.|||+|+-......-..........|...+++.+-....+|+ ++.++.+.
T Consensus 67 gv~~~t~GPG~~N~---~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~--~~~~~~~~ 141 (554)
T TIGR03254 67 GVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVL--RAEDIGIG 141 (554)
T ss_pred EEEEEccCccHHhH---HHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcC--CHHHHHHH
Confidence 45666668888874 55788999999999999864432210000011112355666676666667776 67788889
Q ss_pred HHHHHHHHHcc-CCCEEEEEE
Q 013928 305 AKEAIERARRG-EGPTLVECE 324 (434)
Q Consensus 305 ~~~Al~~ar~~-~gP~lIev~ 324 (434)
+.+|++.+..+ .||+.|++-
T Consensus 142 i~rA~~~A~~~~pGPV~l~iP 162 (554)
T TIGR03254 142 IARAIRTAVSGRPGGVYLDLP 162 (554)
T ss_pred HHHHHHHHhcCCCCcEEEEcC
Confidence 99999988875 489999984
No 161
>PRK07064 hypothetical protein; Provisional
Probab=91.80 E-value=1.2 Score=48.19 Aligned_cols=95 Identities=20% Similarity=0.143 Sum_probs=63.3
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
.++++..|=|.++. .-++..|..-+.|||+|+-+-. ..++..........|..++++.+--...+|+ ++.++..
T Consensus 68 ~v~~~t~GpG~~N~---~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~--~~~~~~~ 142 (544)
T PRK07064 68 GVALTSTGTGAGNA---AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSKAAFRVR--SAETALA 142 (544)
T ss_pred eEEEeCCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcceEEEeC--CHHHHHH
Confidence 45666678888874 5588899999999999986421 1111110000011355566665555566674 6778888
Q ss_pred HHHHHHHHHHcc-CCCEEEEEE
Q 013928 304 VAKEAIERARRG-EGPTLVECE 324 (434)
Q Consensus 304 a~~~Al~~ar~~-~gP~lIev~ 324 (434)
.+.+|++.+..+ .||+.|++-
T Consensus 143 ~i~~A~~~a~~~~~GPV~l~iP 164 (544)
T PRK07064 143 TIREAVRVALTAPTGPVSVEIP 164 (544)
T ss_pred HHHHHHHHhccCCCCcEEEEeC
Confidence 999999888876 799999995
No 162
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=91.77 E-value=1.4 Score=48.08 Aligned_cols=93 Identities=22% Similarity=0.209 Sum_probs=61.9
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~ 302 (434)
-.++++..|=|.++. .-+|..|..-+.|||+|.-.-. ..++.. ..| ..|...+++.+--...+|. ++.++.
T Consensus 65 ~gv~~~t~GPG~~N~---~~gla~A~~~~~Pvl~I~g~~~~~~~~~~-~~Q--~~d~~~l~~~vtk~~~~v~--~~~~~~ 136 (579)
T TIGR03457 65 MSMVIGQNGPGVTNC---VTAIAAAYWAHTPVVIVTPEAGTKTIGLG-GFQ--EADQLPMFQEFTKYQGHVR--HPSRMA 136 (579)
T ss_pred CEEEEECCCchHHHH---HHHHHHHhhcCCCEEEEeCCCccccCCCC-CCc--ccchhhhhhcceeEEEecC--CHHHHH
Confidence 345556668888873 4578899999999999973211 111110 011 1245555555544455564 677888
Q ss_pred HHHHHHHHHHHccCCCEEEEEE
Q 013928 303 EVAKEAIERARRGEGPTLVECE 324 (434)
Q Consensus 303 ~a~~~Al~~ar~~~gP~lIev~ 324 (434)
..+++|++.+..++||+.|++-
T Consensus 137 ~~i~~A~~~A~~~~GPV~l~iP 158 (579)
T TIGR03457 137 EVLNRCFERAWREMGPAQLNIP 158 (579)
T ss_pred HHHHHHHHHHhcCCCCEEEEeC
Confidence 9999999998888899999994
No 163
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=91.72 E-value=1.3 Score=48.37 Aligned_cols=95 Identities=17% Similarity=0.030 Sum_probs=63.4
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
-.++++..|=|+++. .-+|..|-.-+.|||+|+-.-...... .......|...+++.+-....+|+ +++++..
T Consensus 75 ~gv~~~t~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~Q~~d~~~l~~~vtk~~~~v~--~~~~~~~ 147 (578)
T PRK06112 75 VAVVTAQNGPAATLL---VAPLAEALKASVPIVALVQDVNRDQTD--RNAFQELDHIALFQSCTKWVRRVT--VAERIDD 147 (578)
T ss_pred CEEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccCC--CCCccccChhhhhccccceEEEeC--CHHHHHH
Confidence 345666668888763 557888999999999998432211100 011112355566666665566665 5778888
Q ss_pred HHHHHHHHHHcc-CCCEEEEEEE
Q 013928 304 VAKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 304 a~~~Al~~ar~~-~gP~lIev~t 325 (434)
.+.+|++.++.+ .||+.|++-.
T Consensus 148 ~i~~A~~~A~~~~~GPv~l~iP~ 170 (578)
T PRK06112 148 YVDQAFTAATSGRPGPVVLLLPA 170 (578)
T ss_pred HHHHHHHHHhhCCCCcEEEEcCH
Confidence 999999888887 4999999953
No 164
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=91.71 E-value=1.4 Score=47.74 Aligned_cols=95 Identities=11% Similarity=0.013 Sum_probs=62.2
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
-.++++..|=|.++. .-++..|-.-+.|||+|+-.-....-. .......|...+++.+-....+|. ++.++..
T Consensus 65 pgv~~~t~GPG~~N~---l~~l~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~vtk~~~~v~--~~~~~~~ 137 (549)
T PRK06457 65 PSACMGTSGPGSIHL---LNGLYDAKMDHAPVIALTGQVESDMIG--HDYFQEVNLTKLFDDVAVFNQILI--NPENAEY 137 (549)
T ss_pred CeEEEeCCCCchhhh---HHHHHHHHhcCCCEEEEecCCCccccC--CCcccccchhhhhccceeEEEEeC--CHHHHHH
Confidence 345566678888874 558889999999999998543211100 111112244555554444444554 6678888
Q ss_pred HHHHHHHHHHccCCCEEEEEEE
Q 013928 304 VAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 304 a~~~Al~~ar~~~gP~lIev~t 325 (434)
.+++|++.+....||+.|++-.
T Consensus 138 ~i~~A~~~a~~~~GPV~l~iP~ 159 (549)
T PRK06457 138 IIRRAIREAISKRGVAHINLPV 159 (549)
T ss_pred HHHHHHHHHhcCCCCEEEEeCH
Confidence 9999998888888999999953
No 165
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=91.36 E-value=1.6 Score=47.83 Aligned_cols=92 Identities=18% Similarity=0.188 Sum_probs=60.7
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
.++++..|=|.++. .-++..|..-+.|||+|+-.-.. .++.. ..| ..|...+++.+--...+| .++.++..
T Consensus 70 gv~~~t~GPG~~n~---~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~-~~q--~~d~~~l~~~~tk~~~~i--~~~~~~~~ 141 (588)
T PRK07525 70 GMVIGQNGPGITNF---VTAVATAYWAHTPVVLVTPQAGTKTIGQG-GFQ--EAEQMPMFEDMTKYQEEV--RDPSRMAE 141 (588)
T ss_pred EEEEEcCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCcccCCCC-CCc--ccchhhhhhhheeEEEEC--CCHHHHHH
Confidence 45666668888863 45788899999999999832110 11100 011 124445555543344555 46778889
Q ss_pred HHHHHHHHHHccCCCEEEEEE
Q 013928 304 VAKEAIERARRGEGPTLVECE 324 (434)
Q Consensus 304 a~~~Al~~ar~~~gP~lIev~ 324 (434)
.+++|++.++...||+.|++-
T Consensus 142 ~i~rA~~~A~~~~GPV~i~iP 162 (588)
T PRK07525 142 VLNRVFDKAKRESGPAQINIP 162 (588)
T ss_pred HHHHHHHHHhcCCCCEEEEcC
Confidence 999999999988999999994
No 166
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=91.31 E-value=1.4 Score=48.02 Aligned_cols=92 Identities=16% Similarity=0.095 Sum_probs=62.1
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHH
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA 305 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~ 305 (434)
++++..|=|.++. .-++..|-.-+.|||+|.-.-....-.....| ..|...+++.+--...+|+ +++++...+
T Consensus 71 v~~~t~GpG~~N~---l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~i~~~~tk~~~~v~--~~~~~~~~l 143 (572)
T PRK06456 71 VCTATSGPGTTNL---VTGLITAYWDSSPVIAITGQVPRSVMGKMAFQ--EADAMGVFENVTKYVIGIK--RIDEIPQWI 143 (572)
T ss_pred EEEeCCCCCHHHH---HHHHHHHHhhCCCEEEEecCCCccccCCCCcc--ccchhhhhhccceeEEEeC--CHHHHHHHH
Confidence 4445578888873 55788999999999999854321111000111 1245556666555566664 778888999
Q ss_pred HHHHHHHHccC-CCEEEEEE
Q 013928 306 KEAIERARRGE-GPTLVECE 324 (434)
Q Consensus 306 ~~Al~~ar~~~-gP~lIev~ 324 (434)
.+|++.+..+. ||+.|++-
T Consensus 144 ~~A~~~A~~~~~GPV~l~iP 163 (572)
T PRK06456 144 KNAFYIATTGRPGPVVIDIP 163 (572)
T ss_pred HHHHHHHhcCCCCcEEEecC
Confidence 99999888864 99999995
No 167
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=91.27 E-value=1.2 Score=48.65 Aligned_cols=96 Identities=20% Similarity=0.168 Sum_probs=67.6
Q ss_pred CCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHH
Q 013928 222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 301 (434)
Q Consensus 222 ~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av 301 (434)
+.-.++++..|-|+++- .-.|..|..-+.|+|+|.-.=. ............|...+++.+--..++|. +++++
T Consensus 63 GkpgV~~~tsGPGatN~---~tgla~A~~d~~Pll~itGqv~--~~~~g~~afQe~D~~~l~~p~tk~~~~v~--~~~~i 135 (550)
T COG0028 63 GKPGVCLVTSGPGATNL---LTGLADAYMDSVPLLAITGQVP--TSLIGTDAFQEVDQVGLFRPITKYNFEVR--SPEDI 135 (550)
T ss_pred CCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCcc--ccccCcchhhhcchhhHhhhhheeEEEeC--CHHHH
Confidence 44568899999999873 4478899999999998874211 11111111112366666666655566676 67899
Q ss_pred HHHHHHHHHHHHccC-CCEEEEEE
Q 013928 302 REVAKEAIERARRGE-GPTLVECE 324 (434)
Q Consensus 302 ~~a~~~Al~~ar~~~-gP~lIev~ 324 (434)
.+.+++|++.+..++ ||++|++-
T Consensus 136 p~~i~~Af~~A~sgrpGpv~i~iP 159 (550)
T COG0028 136 PEVVARAFRIALSGRPGPVVVDLP 159 (550)
T ss_pred HHHHHHHHHHHhcCCCceEEEEcC
Confidence 999999999999887 99999984
No 168
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=91.24 E-value=1 Score=46.77 Aligned_cols=115 Identities=21% Similarity=0.237 Sum_probs=76.5
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEEEe-CccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccccccccCc
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFF-GDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDP 277 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~-GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~~~~~~~ 277 (434)
.+.+|+|+++| +.++++.+ |-|=..| .|.+.+++-..+|+|+++.+-. -+.+.++.....+.
T Consensus 59 A~~~a~GAs~a-------------G~Ra~taTSg~G~~lm---~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~D~ 122 (375)
T PRK09627 59 GISVALGASMS-------------GVKSMTASSGPGISLK---AEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVAQGDV 122 (375)
T ss_pred HHHHHHHHHhh-------------CCCEEeecCCchHHHH---hhHHHHHHhccCCEEEEEeccCCCcCCCCCccchHHH
Confidence 46778899988 33444444 5554445 8899999999999888777653 12333332221111
Q ss_pred hhhhccccCC-CcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCC
Q 013928 278 QIYKKGPAFG-MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL 333 (434)
Q Consensus 278 d~~~~a~a~G-i~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~ 333 (434)
...+...+| .+.+.+.-.|+.++++....|++.+.+.+-|++|-...+ -+|+.
T Consensus 123 -~~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~--lsh~~ 176 (375)
T PRK09627 123 -NQAKNPTHGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDET--VGHMY 176 (375)
T ss_pred -HHHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchH--HhCCe
Confidence 222333333 344567778999999999999999998999999988872 36653
No 169
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.14 E-value=1.6 Score=47.58 Aligned_cols=95 Identities=20% Similarity=0.200 Sum_probs=65.1
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
-.++++..|=|.++. .-++..|..-+.|||+|+-.-....-. .......|...+++.+-....+|+ +++++..
T Consensus 68 ~gv~~~t~GPG~~n~---l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~~tk~~~~v~--~~~~~~~ 140 (574)
T PRK07979 68 VGVVLVTSGPGATNA---ITGIATAYMDSIPLVVLSGQVATSLIG--YDAFQECDMVGISRPVVKHSFLVK--QTEDIPQ 140 (574)
T ss_pred ceEEEECCCccHhhh---HHHHHHHhhcCCCEEEEECCCChhccC--CCCCceecHHHHhhcccceEEEeC--CHHHHHH
Confidence 346677778888863 457888999999999998543211100 111112355566666655566775 6789999
Q ss_pred HHHHHHHHHHccC-CCEEEEEEE
Q 013928 304 VAKEAIERARRGE-GPTLVECET 325 (434)
Q Consensus 304 a~~~Al~~ar~~~-gP~lIev~t 325 (434)
.+++|++.+..+. ||+.|++-.
T Consensus 141 ~l~~A~~~A~~~~~GPv~l~iP~ 163 (574)
T PRK07979 141 VLKKAFWLAASGRPGPVVVDLPK 163 (574)
T ss_pred HHHHHHHHHccCCCCcEEEEcCh
Confidence 9999999888874 999999954
No 170
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=91.10 E-value=1.6 Score=47.31 Aligned_cols=94 Identities=27% Similarity=0.281 Sum_probs=63.9
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~ 302 (434)
-.++++..|=|.++. .-++..|..-+.|||+|.-.-.. .++.. ..| ..|...+++.+--...+|+ ++.++.
T Consensus 64 ~gv~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q--~~d~~~~~~~~tk~~~~v~--~~~~~~ 135 (548)
T PRK08978 64 VGVCIATSGPGATNL---ITGLADALLDSVPVVAITGQVSSPLIGTD-AFQ--EIDVLGLSLACTKHSFLVQ--SLEELP 135 (548)
T ss_pred CEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC-CCc--ccchhccccCceeeEEEEC--CHHHHH
Confidence 345666678888873 56888999999999999853321 11110 111 2345556665555566775 678899
Q ss_pred HHHHHHHHHHHcc-CCCEEEEEEE
Q 013928 303 EVAKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 303 ~a~~~Al~~ar~~-~gP~lIev~t 325 (434)
..+++|++.++.+ .||+.|++-.
T Consensus 136 ~~i~~A~~~A~~~~~GPV~l~iP~ 159 (548)
T PRK08978 136 EIMAEAFEIASSGRPGPVLVDIPK 159 (548)
T ss_pred HHHHHHHHHHhcCCCCcEEEecCh
Confidence 9999999888886 4999999853
No 171
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=91.01 E-value=1.6 Score=47.67 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=63.3
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccC-cccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~i-s~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
.++++..|=|.++. .-++..|..-+.|||+|+-.-.... .... ......|...+++.+--...+|+ ++.++..
T Consensus 74 gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~-~~~q~~d~~~~~~~~tk~s~~v~--~~~~~~~ 147 (569)
T PRK09259 74 GVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSEREIVDLQQ-GDYEELDQLNAAKPFCKAAFRVN--RAEDIGI 147 (569)
T ss_pred EEEEEcCCccHHHH---HHHHHHHHhcCCCEEEEEccCCcccccccC-CCccccchhhhhhhheeeeEEcC--CHHHHHH
Confidence 45566668888874 4578899999999999985432111 0000 01112355556666555566665 6789999
Q ss_pred HHHHHHHHHHcc-CCCEEEEEE
Q 013928 304 VAKEAIERARRG-EGPTLVECE 324 (434)
Q Consensus 304 a~~~Al~~ar~~-~gP~lIev~ 324 (434)
.+.+|++.+..+ .||+.|++-
T Consensus 148 ~i~~A~~~A~~~~~GPV~l~iP 169 (569)
T PRK09259 148 GVARAIRTAVSGRPGGVYLDLP 169 (569)
T ss_pred HHHHHHHHhhhCCCCcEEEEeC
Confidence 999999999876 589999985
No 172
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=90.85 E-value=0.95 Score=43.83 Aligned_cols=113 Identities=20% Similarity=0.146 Sum_probs=66.7
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchh
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 279 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~ 279 (434)
.+.+++|++++ + .+...+.-|-|=..+ .|.|.+++-..+|+|+++.|-. +-++....+....|+
T Consensus 48 A~~~~~GAs~a-----------G-~ra~t~ts~~Gl~lm---~e~l~~a~~~~~P~V~~~~~R~-g~~~g~~~~~~q~D~ 111 (230)
T PF01855_consen 48 AMEAAIGASAA-----------G-ARAMTATSGPGLNLM---AEPLYWAAGTELPIVIVVVQRA-GPSPGLSTQPEQDDL 111 (230)
T ss_dssp HHHHHHHHHHT-----------T---EEEEEECCHHHHH---CCCHHHHHHTT--EEEEEEEB----SSSB--SB-SHHH
T ss_pred HHHHHHHHHhc-----------C-CceEEeecCCccccc---HhHHHHHHHcCCCEEEEEEECC-CCCCCCcCcCChhHH
Confidence 35678888887 2 233445555554333 6789999999999888887654 222201111111232
Q ss_pred hhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCC
Q 013928 280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 332 (434)
Q Consensus 280 ~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs 332 (434)
. .++.+||.++. ..|+.++++-...|++.+.+..-|+++-...++. .|+
T Consensus 112 ~-~~~d~~~~vl~--p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~ 160 (230)
T PF01855_consen 112 M-AARDSGWIVLA--PSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHS 160 (230)
T ss_dssp H-HTTTSS-EEEE----SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-
T ss_pred H-HHHhcCeEEEe--CCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCc
Confidence 2 22356666554 4588899999999999999999999998888765 354
No 173
>PRK07524 hypothetical protein; Provisional
Probab=90.81 E-value=2.1 Score=46.24 Aligned_cols=96 Identities=15% Similarity=0.119 Sum_probs=64.8
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
.++++..|=|.++. .-++..|..-+.|||+|+-.... ..+..........|...+++.+-....+|+ ++.++.+
T Consensus 66 gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~--~~~~~~~ 140 (535)
T PRK07524 66 GVCFIITGPGMTNI---ATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLM--SAEDLPE 140 (535)
T ss_pred eEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeC--CHHHHHH
Confidence 45666678888864 55888999999999999853321 111100000111355666776666666665 6779999
Q ss_pred HHHHHHHHHHcc-CCCEEEEEEE
Q 013928 304 VAKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 304 a~~~Al~~ar~~-~gP~lIev~t 325 (434)
.+.+|++.++.+ .||+.|++-.
T Consensus 141 ~l~~A~~~A~~~~~GPV~l~iP~ 163 (535)
T PRK07524 141 VLARAFAVFDSARPRPVHIEIPL 163 (535)
T ss_pred HHHHHHHHHhcCCCCcEEEEeCH
Confidence 999999999876 6999999853
No 174
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.68 E-value=2 Score=46.81 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=65.0
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
-.++++..|=|.++. .-++..|..-+.|||+|.-.-....-.....| ..|...+++.+-....+|+ ++.++..
T Consensus 68 ~gv~~vt~GPG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~l~~~itk~s~~v~--~~~~~~~ 140 (574)
T PRK06466 68 TGVVLVTSGPGATNA---ITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQ--ETDMVGISRPIVKHSFMVK--HASEIPE 140 (574)
T ss_pred CEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCccccCCCccc--ccchhhhhhccceeEEEcC--CHHHHHH
Confidence 345666678888873 55888999999999999854332111000111 2355566666555556665 6778889
Q ss_pred HHHHHHHHHHcc-CCCEEEEEEEe
Q 013928 304 VAKEAIERARRG-EGPTLVECETY 326 (434)
Q Consensus 304 a~~~Al~~ar~~-~gP~lIev~t~ 326 (434)
.+++|+..+..+ .||+.|++-..
T Consensus 141 ~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 141 IIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred HHHHHHHHHhcCCCCcEEEEcCHh
Confidence 999999988877 49999999543
No 175
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.67 E-value=1.9 Score=47.12 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=64.7
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
-.++++..|=|.++. .-++..|-.-+.|||+|+-.-.... .........|...+++.+-....+|. ++.++.+
T Consensus 78 ~gv~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~--~~~~~~q~~d~~~l~~~itk~~~~v~--~~~~i~~ 150 (570)
T PRK06725 78 VGVVFATSGPGATNL---VTGLADAYMDSIPLVVITGQVATPL--IGKDGFQEADVVGITVPVTKHNYQVR--DVNQLSR 150 (570)
T ss_pred CeEEEECCCccHHHH---HHHHHHHhhcCcCEEEEecCCCccc--ccCCCCcccchhhhhhccceeEEEcC--CHHHHHH
Confidence 345666678888763 4578888899999999985332111 00111112356667776665566775 6789999
Q ss_pred HHHHHHHHHHccC-CCEEEEEEE
Q 013928 304 VAKEAIERARRGE-GPTLVECET 325 (434)
Q Consensus 304 a~~~Al~~ar~~~-gP~lIev~t 325 (434)
.+++|+..++.+. ||+.|++-.
T Consensus 151 ~l~~A~~~A~s~~~GPV~l~iP~ 173 (570)
T PRK06725 151 IVQEAFYIAESGRPGPVLIDIPK 173 (570)
T ss_pred HHHHHHHHHhcCCCCcEEEcccc
Confidence 9999999998874 999999853
No 176
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=90.52 E-value=2.1 Score=47.15 Aligned_cols=93 Identities=23% Similarity=0.304 Sum_probs=62.2
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~ 302 (434)
-.++++..|=|.++. .-+|-.|..-+.|||+|+-+-.. .++. ......|...+++.+--...+|+ +++++.
T Consensus 86 ~gv~~~t~GPG~~n~---l~gl~~A~~d~~Pvl~i~G~~~~~~~~~---~~~Qe~d~~~~~~~vtk~~~~v~--~~~~i~ 157 (616)
T PRK07418 86 VGVCFGTSGPGATNL---VTGIATAQMDSVPMVVITGQVPRPAIGT---DAFQETDIFGITLPIVKHSYVVR--DPSDMA 157 (616)
T ss_pred CeEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCccccCC---CCcccccHHHHhhhcceeEEEeC--CHHHHH
Confidence 345566668988874 55788999999999999853321 1111 11112344555554444445565 677999
Q ss_pred HHHHHHHHHHHccC-CCEEEEEE
Q 013928 303 EVAKEAIERARRGE-GPTLVECE 324 (434)
Q Consensus 303 ~a~~~Al~~ar~~~-gP~lIev~ 324 (434)
.++.+|++.+..++ ||+.|++-
T Consensus 158 ~~l~~A~~~A~~~~~GPv~l~iP 180 (616)
T PRK07418 158 RIVAEAFHIASSGRPGPVLIDIP 180 (616)
T ss_pred HHHHHHHHHHhcCCCCcEEEecc
Confidence 99999999998876 99999985
No 177
>PRK07586 hypothetical protein; Validated
Probab=90.47 E-value=1.8 Score=46.45 Aligned_cols=94 Identities=19% Similarity=0.108 Sum_probs=62.5
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a 304 (434)
.++++..|=|.++. .-.+..|..-+.|||+|.-.-.... ......-..|...+++.+--...+|. ++.++.+.
T Consensus 66 gv~~~t~GPG~~N~---~~gl~~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~~~~~vtk~~~~v~--~~~~~~~~ 138 (514)
T PRK07586 66 AATLLHLGPGLANG---LANLHNARRARTPIVNIVGDHATYH--RKYDAPLTSDIEALARPVSGWVRRSE--SAADVAAD 138 (514)
T ss_pred EEEEecccHHHHHH---HHHHHHHHhcCCCEEEEecCCchhc--cCCCcccccchhhhhccccceeeecC--CHHHHHHH
Confidence 44556668887753 4577889999999999985432111 00011112355566666554555665 66788899
Q ss_pred HHHHHHHHHcc-CCCEEEEEEE
Q 013928 305 AKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 305 ~~~Al~~ar~~-~gP~lIev~t 325 (434)
+++|++.+..+ .||+.|++-.
T Consensus 139 i~~A~~~a~~~~~GPV~l~iP~ 160 (514)
T PRK07586 139 AAAAVAAARGAPGQVATLILPA 160 (514)
T ss_pred HHHHHHHHhcCCCCcEEEEecc
Confidence 99999999887 6999999954
No 178
>PLN02470 acetolactate synthase
Probab=90.43 E-value=1.6 Score=47.88 Aligned_cols=95 Identities=25% Similarity=0.249 Sum_probs=63.4
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
-.++++..|=|.++. .-++..|-.-+.|||+|.-.-.... .........|...+++.+--...+|+ ++.++.+
T Consensus 77 ~gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~I~G~~~~~~--~~~~~~q~~d~~~l~~~~tk~~~~v~--~~~~i~~ 149 (585)
T PLN02470 77 VGVCIATSGPGATNL---VTGLADALLDSVPLVAITGQVPRRM--IGTDAFQETPIVEVTRSITKHNYLVM--DVEDIPR 149 (585)
T ss_pred CEEEEECCCccHHHH---HHHHHHHHhcCCcEEEEecCCChhh--cCCCcCcccchhhhhhhheEEEEEcC--CHHHHHH
Confidence 345667778888863 5578889999999999975332110 00011112344455555554555664 7789999
Q ss_pred HHHHHHHHHHccC-CCEEEEEEE
Q 013928 304 VAKEAIERARRGE-GPTLVECET 325 (434)
Q Consensus 304 a~~~Al~~ar~~~-gP~lIev~t 325 (434)
.+.+|++.+..+. ||+.|++-.
T Consensus 150 ~l~~A~~~A~s~~~GPV~l~iP~ 172 (585)
T PLN02470 150 VIREAFFLASSGRPGPVLVDIPK 172 (585)
T ss_pred HHHHHHHHhcCCCCCeEEEEecC
Confidence 9999999998875 999999954
No 179
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=90.33 E-value=2.3 Score=46.89 Aligned_cols=95 Identities=23% Similarity=0.228 Sum_probs=63.5
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
-.++++..|=|.++. .-+|..|..-+.|||+|+-.-.... .........|...+++.+-....+|+ ++.++..
T Consensus 95 ~gv~~~t~GPG~~N~---l~gl~~A~~~~~PllvI~G~~~~~~--~~~~~~q~~d~~~l~~~~tk~s~~v~--~~~~i~~ 167 (612)
T PRK07789 95 VGVCMATSGPGATNL---VTPIADANMDSVPVVAITGQVGRGL--IGTDAFQEADIVGITMPITKHNFLVT--DADDIPR 167 (612)
T ss_pred CEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccc--cCCCcCcccchhhhhhcceeEEEEcC--CHHHHHH
Confidence 345666778888864 5578889999999999985332111 00011112355556665554555664 7789999
Q ss_pred HHHHHHHHHHcc-CCCEEEEEEE
Q 013928 304 VAKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 304 a~~~Al~~ar~~-~gP~lIev~t 325 (434)
.+.+|+..++.+ .||+.|++-.
T Consensus 168 ~l~~A~~~A~~~~~GPV~l~iP~ 190 (612)
T PRK07789 168 VIAEAFHIASTGRPGPVLVDIPK 190 (612)
T ss_pred HHHHHHHHHhcCCCceEEEEEcc
Confidence 999999988876 5999999854
No 180
>PRK08322 acetolactate synthase; Reviewed
Probab=90.10 E-value=1.8 Score=46.75 Aligned_cols=95 Identities=17% Similarity=0.108 Sum_probs=62.5
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
-.++++..|=|.++. .-++..|-.-+.|+|+|.-+-..........| ..|...+++.+--...+|+ ++.++..
T Consensus 64 ~gv~~~t~GpG~~N~---~~~i~~A~~~~~Pll~i~g~~~~~~~~~~~~q--~~d~~~~~~~~tk~~~~v~--~~~~~~~ 136 (547)
T PRK08322 64 AGVCLSTLGPGATNL---VTGVAYAQLGGMPMVAITGQKPIKRSKQGSFQ--IVDVVAMMAPLTKWTRQIV--SPDNIPE 136 (547)
T ss_pred CEEEEECCCccHhHH---HHHHHHHhhcCCCEEEEeccccccccCCCccc--cccHHHHhhhheeEEEEeC--CHHHHHH
Confidence 345566668888864 55788899999999999853321110001111 2355555655544455664 6778889
Q ss_pred HHHHHHHHHHcc-CCCEEEEEEE
Q 013928 304 VAKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 304 a~~~Al~~ar~~-~gP~lIev~t 325 (434)
.+.+|++.+..+ .||+.|++-.
T Consensus 137 ~i~~A~~~A~~~~~GPV~l~iP~ 159 (547)
T PRK08322 137 VVREAFRLAEEERPGAVHLELPE 159 (547)
T ss_pred HHHHHHHHHccCCCCcEEEEcCh
Confidence 999999988886 4899999953
No 181
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=89.99 E-value=2.1 Score=46.90 Aligned_cols=93 Identities=18% Similarity=0.175 Sum_probs=62.5
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHH
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA 305 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~ 305 (434)
++++..|=|.++. .-+|..|..-+.|||+|+-.-....... ......|...+++.+-....+|. ++.++.+.+
T Consensus 70 v~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~D~~~~~~~vtk~~~~v~--~~~~i~~~i 142 (588)
T TIGR01504 70 VCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIAAIAKPVSKMAVTVR--EAALVPRVL 142 (588)
T ss_pred EEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC--CcccccCHHHHhhhhceEEEEcC--CHHHHHHHH
Confidence 3444558887763 4578889999999999985433211110 11112355566666655566665 678999999
Q ss_pred HHHHHHHHccC-CCEEEEEEE
Q 013928 306 KEAIERARRGE-GPTLVECET 325 (434)
Q Consensus 306 ~~Al~~ar~~~-gP~lIev~t 325 (434)
++|++.++.++ ||+.|++-.
T Consensus 143 ~~A~~~A~~~~~GPV~l~iP~ 163 (588)
T TIGR01504 143 QQAFHLMRSGRPGPVLIDLPF 163 (588)
T ss_pred HHHHHHHccCCCCeEEEEeCc
Confidence 99999888764 899999954
No 182
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=89.97 E-value=2 Score=46.72 Aligned_cols=92 Identities=20% Similarity=0.267 Sum_probs=60.2
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHH
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA 305 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~ 305 (434)
++++..|=|.++. .-+|..|..-+.|||+|.-.-....-.....| ..|...+++.+--...+|+ ++.++...+
T Consensus 79 v~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~~~~~~tk~~~~v~--~~~~~~~~i 151 (564)
T PRK08155 79 VCMACSGPGATNL---VTAIADARLDSIPLVCITGQVPASMIGTDAFQ--EVDTYGISIPITKHNYLVR--DIEELPQVI 151 (564)
T ss_pred EEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeccCCcccccCCCcc--ccchhhhhhccceEEEEcC--CHHHHHHHH
Confidence 4455558888763 55788899999999999753321110000011 1244445555444455664 788999999
Q ss_pred HHHHHHHHcc-CCCEEEEEE
Q 013928 306 KEAIERARRG-EGPTLVECE 324 (434)
Q Consensus 306 ~~Al~~ar~~-~gP~lIev~ 324 (434)
.+|++.++.+ .||+.|++-
T Consensus 152 ~~A~~~a~~~~~GPV~i~iP 171 (564)
T PRK08155 152 SDAFRIAQSGRPGPVWIDIP 171 (564)
T ss_pred HHHHHHHhcCCCCcEEEEcC
Confidence 9999988887 499999995
No 183
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=89.94 E-value=2.4 Score=46.47 Aligned_cols=95 Identities=17% Similarity=0.149 Sum_probs=62.7
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
-.++++..|=|.++. .-++..|..-+.|||+|+-.-... ..........|...+++.+-....+|+ ++.++..
T Consensus 64 ~gv~~~t~GPG~~n~---l~~i~~A~~~~~Pvl~I~G~~~~~--~~~~~~~q~~d~~~l~~~~tk~s~~v~--~~~~i~~ 136 (586)
T PRK06276 64 VGVCVATSGPGATNL---VTGIATAYADSSPVIALTGQVPTK--LIGNDAFQEIDALGIFMPITKHNFQIK--KPEEIPE 136 (586)
T ss_pred CEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCCcc--ccCCCCCccccHhhHHhhhcceEEecC--CHHHHHH
Confidence 345666678888764 568889999999999997432210 000000111345556666555556665 5678889
Q ss_pred HHHHHHHHHHcc-CCCEEEEEEE
Q 013928 304 VAKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 304 a~~~Al~~ar~~-~gP~lIev~t 325 (434)
.+.+|++.+..+ .||+.|++-.
T Consensus 137 ~i~~A~~~A~~~~~GPV~l~iP~ 159 (586)
T PRK06276 137 IFRAAFEIAKTGRPGPVHIDLPK 159 (586)
T ss_pred HHHHHHHHhcCCCCCcEEEEcCh
Confidence 999999988876 4899999953
No 184
>PRK08266 hypothetical protein; Provisional
Probab=89.88 E-value=2.6 Score=45.50 Aligned_cols=96 Identities=17% Similarity=0.093 Sum_probs=63.1
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccccccccc-CchhhhccccCCCcEEEEeCCCHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATS-DPQIYKKGPAFGMPGFHVDGMDVLKVR 302 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~~~~~-~~d~~~~a~a~Gi~~~~VdG~D~~av~ 302 (434)
.++++..|=|.++. .-++..|..-+.|||+|+-.-. +.++... .+.. ..|...+++.+--...+|+ ++.++.
T Consensus 70 ~v~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~-~~~~~~~d~~~~~~~~tk~~~~v~--~~~~~~ 143 (542)
T PRK08266 70 GVCSVVPGPGVLNA---GAALLTAYGCNSPVLCLTGQIPSALIGKGR-GHLHEMPDQLATLRSFTKWAERIE--HPSEAP 143 (542)
T ss_pred eEEEECCCCcHHHH---HHHHHHHHhhCCCEEEEecCCChhhccCCC-CcceecccHhhHHhhhcceEEEeC--CHHHHH
Confidence 35556668888874 5588899999999999984321 1111100 0111 1355666666655566776 567888
Q ss_pred HHHHHHHHHHHcc-CCCEEEEEEEe
Q 013928 303 EVAKEAIERARRG-EGPTLVECETY 326 (434)
Q Consensus 303 ~a~~~Al~~ar~~-~gP~lIev~t~ 326 (434)
..+++|++.+..+ .||+.|++-..
T Consensus 144 ~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 144 ALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred HHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 8899999888775 59999999543
No 185
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=89.85 E-value=2.2 Score=46.57 Aligned_cols=94 Identities=22% Similarity=0.245 Sum_probs=61.6
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a 304 (434)
.++++..|=|.++. .-++..|..-+.|||+|.-.-....-.....| ..|...+++.+-....+|. ++.++...
T Consensus 80 gv~~~t~GPG~~N~---~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~~q--~~d~~~l~~~~tk~~~~v~--~~~~~~~~ 152 (571)
T PRK07710 80 GVVIATSGPGATNV---VTGLADAMIDSLPLVVFTGQVATSVIGSDAFQ--EADIMGITMPVTKHNYQVR--KASDLPRI 152 (571)
T ss_pred eEEEECCCccHHHH---HHHHHHHhhcCCCEEEEeccCCccccCCCCcc--ccchhhhhhcccceEEecC--CHHHHHHH
Confidence 45566668888763 55788899999999999854331110000111 2345555555444455554 67788889
Q ss_pred HHHHHHHHHcc-CCCEEEEEEE
Q 013928 305 AKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 305 ~~~Al~~ar~~-~gP~lIev~t 325 (434)
+++|++.++.+ .||+.|++-.
T Consensus 153 i~~A~~~A~~~~~GPV~l~iP~ 174 (571)
T PRK07710 153 IKEAFHIATTGRPGPVLIDIPK 174 (571)
T ss_pred HHHHHHHHhcCCCCcEEEEcCh
Confidence 99999888877 4999999954
No 186
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=89.82 E-value=3.1 Score=45.19 Aligned_cols=95 Identities=22% Similarity=0.230 Sum_probs=64.4
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
-.++++..|=|.++. .-++..|..-+.|||+|+-.-....-.....| ..|...+++.+-....+|+ ++.++..
T Consensus 65 ~gv~~~t~GpG~~n~---l~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~~~~~~tk~~~~v~--~~~~~~~ 137 (558)
T TIGR00118 65 VGVVLVTSGPGATNL---VTGIATAYMDSIPMVVFTGQVPTSLIGSDAFQ--EADILGITMPITKHSFQVK--SAEDIPR 137 (558)
T ss_pred CEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCCccccCCCCCc--ccChhhhhcCccceeEEeC--CHHHHHH
Confidence 346667778888764 55888999999999999853221100000011 2355566666666667775 6778989
Q ss_pred HHHHHHHHHHcc-CCCEEEEEEE
Q 013928 304 VAKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 304 a~~~Al~~ar~~-~gP~lIev~t 325 (434)
.+.+|++.+..+ .||+.|++-.
T Consensus 138 ~v~~A~~~A~~~~~GPV~i~iP~ 160 (558)
T TIGR00118 138 IIKEAFHIATTGRPGPVLVDLPK 160 (558)
T ss_pred HHHHHHHHHhcCCCCeEEEEcCh
Confidence 999999988887 4899999953
No 187
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.72 E-value=2.1 Score=47.02 Aligned_cols=94 Identities=22% Similarity=0.206 Sum_probs=62.6
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a 304 (434)
.++++..|=|.++. .-++..|..-+.|||+|.-.-....-.....| ..|...+++.+--...+|+ ++.++...
T Consensus 76 gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~l~~~vtk~~~~v~--~~~~i~~~ 148 (595)
T PRK09107 76 GVVLVTSGPGATNA---VTPLQDALMDSIPLVCITGQVPTHLIGSDAFQ--ECDTVGITRPCTKHNWLVK--DVNDLARV 148 (595)
T ss_pred EEEEECCCccHhHH---HHHHHHHhhcCCCEEEEEcCCChhhcCCCCCc--ccchhhhhhhheEEEEEeC--CHHHHHHH
Confidence 45666678888874 45788899999999999854331110000111 2344455555444455664 67899999
Q ss_pred HHHHHHHHHcc-CCCEEEEEEE
Q 013928 305 AKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 305 ~~~Al~~ar~~-~gP~lIev~t 325 (434)
+.+|++.++.+ .||+.|++-.
T Consensus 149 l~~A~~~A~s~~~GPV~l~iP~ 170 (595)
T PRK09107 149 IHEAFHVATSGRPGPVVVDIPK 170 (595)
T ss_pred HHHHHHHhcCCCCceEEEecCC
Confidence 99999999887 4999999843
No 188
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.71 E-value=2.3 Score=46.40 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=62.7
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
-.++++..|=|.++. .-++..|..-+.|||+|.-.-....-.....| ..|...+++.+-....+|. ++.++..
T Consensus 68 ~gv~~~t~GpG~~N~---l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~~~q--~~d~~~l~~~vtk~s~~v~--~~~~~~~ 140 (574)
T PRK06882 68 VGCVLVTSGPGATNA---ITGIATAYTDSVPLVILSGQVPSNLIGTDAFQ--ECDMLGISRPVVKHSFIVK--NAEDIPS 140 (574)
T ss_pred CeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCccc--ccchhhhhhcccceEEEeC--CHHHHHH
Confidence 345666668888764 45788899999999999754321110000111 2345556665555556665 6778888
Q ss_pred HHHHHHHHHHcc-CCCEEEEEEE
Q 013928 304 VAKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 304 a~~~Al~~ar~~-~gP~lIev~t 325 (434)
.+.+|++.+..+ .||+.|++-.
T Consensus 141 ~l~~A~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06882 141 TIKKAFYIASTGRPGPVVIDIPK 163 (574)
T ss_pred HHHHHHHHHhcCCCCCEEEecCH
Confidence 999999888776 5999999954
No 189
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=89.53 E-value=2.1 Score=46.43 Aligned_cols=93 Identities=14% Similarity=0.117 Sum_probs=60.9
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a 304 (434)
.++++..|=|.++. .-++..|-.-+.|||+|.-.-..........| ..|...+++.+=-...+| .++.++.+.
T Consensus 73 gv~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~l~~~~tk~~~~v--~~~~~~~~~ 145 (557)
T PRK08199 73 GICFVTRGPGATNA---SIGVHTAFQDSTPMILFVGQVARDFREREAFQ--EIDYRRMFGPMAKWVAEI--DDAARIPEL 145 (557)
T ss_pred EEEEeCCCccHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCCccc--ccCHHHhhhhhhceeeec--CCHHHHHHH
Confidence 45566668888863 55788999999999999843221110000111 124444555443344555 478899999
Q ss_pred HHHHHHHHHcc-CCCEEEEEE
Q 013928 305 AKEAIERARRG-EGPTLVECE 324 (434)
Q Consensus 305 ~~~Al~~ar~~-~gP~lIev~ 324 (434)
+.+|++.+..+ .||+.|++-
T Consensus 146 ~~~A~~~A~~~~~GPV~l~iP 166 (557)
T PRK08199 146 VSRAFHVATSGRPGPVVLALP 166 (557)
T ss_pred HHHHHHHHhcCCCCcEEEEcC
Confidence 99999998887 599999985
No 190
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=89.41 E-value=1.8 Score=47.57 Aligned_cols=95 Identities=19% Similarity=0.057 Sum_probs=60.9
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCC-CcEEEEeCCCHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFG-MPGFHVDGMDVLKVRE 303 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G-i~~~~VdG~D~~av~~ 303 (434)
.++++..|=|+++. .-++..|-.-+.|||+|+-.=.... .........|...+++.+- ....+|+ ++.++..
T Consensus 69 gv~~~t~GPG~~n~---~~gi~~A~~d~vPvl~I~G~~~~~~--~~~~~~q~~d~~~l~~~vt~k~~~~v~--~~~~~~~ 141 (597)
T PRK08273 69 GVCLATSGPGAIHL---LNGLYDAKLDHVPVVAIVGQQARAA--LGGHYQQEVDLQSLFKDVAGAFVQMVT--VPEQLRH 141 (597)
T ss_pred EEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCchhh--cCCCCCCccCHHHHHHHHHHHHeeEeC--CHHHHHH
Confidence 45556668888874 4578889999999999984321000 0000111234444555443 3344565 5678888
Q ss_pred HHHHHHHHHHccCCCEEEEEEEe
Q 013928 304 VAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 304 a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
.+.+|++.+..+.||+.|++-..
T Consensus 142 ~l~~A~~~A~~~~gPV~i~iP~D 164 (597)
T PRK08273 142 LVDRAVRTALAERTVTAVILPND 164 (597)
T ss_pred HHHHHHHHHhhCCCCEEEEeCcc
Confidence 89999999888889999998543
No 191
>PRK12474 hypothetical protein; Provisional
Probab=89.29 E-value=2.7 Score=45.27 Aligned_cols=95 Identities=18% Similarity=0.079 Sum_probs=61.6
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
-.++++..|=|.++- .-++..|..-+.|||+|+-............| ..|...+++.+--...+| .++.++.+
T Consensus 69 ~gv~~~t~GpG~~N~---~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~~~~~vtk~~~~v--~~~~~~~~ 141 (518)
T PRK12474 69 PAVTLLHLGPGLANG---LANLHNARRAASPIVNIVGDHAVEHLQYDAPL--TSDIDGFARPVSRWVHRS--ASAGAVDS 141 (518)
T ss_pred CEEEEEccchhHhHh---HHHHHHHhhcCCCEEEEeccCchhhcCCCCcc--ccCHHHhhhcccceeeec--CCHHHHHH
Confidence 345566668887763 45778889999999999854321110000011 135555666544444455 47788999
Q ss_pred HHHHHHHHHHccC-CCEEEEEEE
Q 013928 304 VAKEAIERARRGE-GPTLVECET 325 (434)
Q Consensus 304 a~~~Al~~ar~~~-gP~lIev~t 325 (434)
.+++|++.+..+. ||++|++-.
T Consensus 142 ~i~rA~~~A~~~~~GPV~l~iP~ 164 (518)
T PRK12474 142 DVARAVQAAQSAPGGIATLIMPA 164 (518)
T ss_pred HHHHHHHHHhcCCCCcEEEEech
Confidence 9999998888775 999999954
No 192
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.28 E-value=2.2 Score=46.54 Aligned_cols=94 Identities=20% Similarity=0.230 Sum_probs=61.7
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a 304 (434)
.++++..|=|.++. .-++..|..-+.|||+|.-.-..... ........|...+++.+--...+|+ +++++...
T Consensus 69 gv~~~t~GpG~~n~---l~gia~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~itk~~~~v~--~~~~~~~~ 141 (572)
T PRK08979 69 GVVLVTSGPGATNT---ITGIATAYMDSIPMVVLSGQVPSNLI--GNDAFQECDMIGISRPVVKHSFLVK--DAEDIPEI 141 (572)
T ss_pred eEEEECCCchHhHH---HHHHHHHhhcCCCEEEEecCCCcccc--CCCCCcccchhHHhhhceeEEEecC--CHHHHHHH
Confidence 45555668888763 45788889999999998743221110 0001112355556665544455665 67889999
Q ss_pred HHHHHHHHHccC-CCEEEEEEE
Q 013928 305 AKEAIERARRGE-GPTLVECET 325 (434)
Q Consensus 305 ~~~Al~~ar~~~-gP~lIev~t 325 (434)
+++|++.++.+. ||+.|++-.
T Consensus 142 l~~A~~~A~~~~~GPV~l~iP~ 163 (572)
T PRK08979 142 IKKAFYIASTGRPGPVVIDLPK 163 (572)
T ss_pred HHHHHHHHhCCCCCcEEEecCH
Confidence 999999988865 999999853
No 193
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=89.28 E-value=2.2 Score=46.32 Aligned_cols=97 Identities=14% Similarity=0.058 Sum_probs=60.7
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc-Cccc--ccccccCc-hhhhccccCCCcEEEEeCCCHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMS--HLRATSDP-QIYKKGPAFGMPGFHVDGMDVL 299 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~-is~~--~~~~~~~~-d~~~~a~a~Gi~~~~VdG~D~~ 299 (434)
-.++++..|=|.++. .-++..|..-+.|||+|.-+.... ++.. .+.+.... +...+++..--...+|. ++.
T Consensus 64 ~gv~~~t~GpG~~n~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~--~~~ 138 (535)
T TIGR03394 64 LGVAAVTYGAGAFNM---VNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVLD--DPA 138 (535)
T ss_pred ceEEEEecchHHHhh---hhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEeC--ChH
Confidence 345666778998874 457889999999999998543211 1110 01111112 23455554433344554 566
Q ss_pred HHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928 300 KVREVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 300 av~~a~~~Al~~ar~~~gP~lIev~t 325 (434)
++.+.+++|++.+....||+.|++-.
T Consensus 139 ~~~~~~~~A~~~a~~~~gPv~i~iP~ 164 (535)
T TIGR03394 139 TAPAEIARVLGSARELSRPVYLEIPR 164 (535)
T ss_pred HhHHHHHHHHHHHHHCCCCEEEEech
Confidence 77778888888888888999999954
No 194
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.77 E-value=3.3 Score=45.34 Aligned_cols=93 Identities=27% Similarity=0.301 Sum_probs=61.7
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
.++++..|=|.++. .-++..|..-+.|||+|.-.=.. .++. ......|...+++.+--...+|. ++.++.+
T Consensus 86 gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~l~~~itk~~~~v~--~~~~~~~ 157 (587)
T PRK06965 86 GVALVTSGPGVTNA---VTGIATAYMDSIPMVVISGQVPTAAIGQ---DAFQECDTVGITRPIVKHNFLVK--DVRDLAE 157 (587)
T ss_pred eEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC---CCcccccHHHHhcCCcceeEEeC--CHHHHHH
Confidence 45566668888763 55788899999999998732110 0110 01112345555666555566665 6678888
Q ss_pred HHHHHHHHHHcc-CCCEEEEEEE
Q 013928 304 VAKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 304 a~~~Al~~ar~~-~gP~lIev~t 325 (434)
.+.+|++.++.+ .||+.|++-.
T Consensus 158 ~i~~A~~~A~~~~~GPV~l~iP~ 180 (587)
T PRK06965 158 TVKKAFYIARTGRPGPVVVDIPK 180 (587)
T ss_pred HHHHHHHHHhcCCCCeEEEEeCh
Confidence 999999999887 4999999943
No 195
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=88.60 E-value=4.3 Score=36.52 Aligned_cols=99 Identities=17% Similarity=0.217 Sum_probs=57.0
Q ss_pred chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHH-HHHHcCCCeEEEEEcCCccC--cccccccccCc
Q 013928 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLN-MAALWKLPIVFVVENNLWAI--GMSHLRATSDP 277 (434)
Q Consensus 201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn-~A~~~~LPvI~VV~NN~y~i--s~~~~~~~~~~ 277 (434)
+.+|.|+|+. + .+++++++ ..|..- .++.|. .++.+++|+++++...+++. ..+++.. ..
T Consensus 52 vg~A~GlA~~-----------G-~~pi~~~~--~~f~~r-a~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~--~~ 114 (156)
T cd07033 52 VGIAAGLALH-----------G-LKPFVSTF--SFFLQR-AYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQG--IE 114 (156)
T ss_pred HHHHHHHHHC-----------C-CeEEEEEC--HHHHHH-HHHHHHHHHhccCCCeEEEEECCcEecCCCCcccch--HH
Confidence 4556677764 3 34455555 444432 366666 99999999999988765544 2222211 12
Q ss_pred hhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 278 QIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 278 d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
++ .... .+|+++| .-.|+.++...++.|+ +.++|++|-+
T Consensus 115 ~~-a~~~--~iPg~~v~~Ps~~~~~~~ll~~a~----~~~~P~~irl 154 (156)
T cd07033 115 DI-ALLR--AIPNMTVLRPADANETAAALEAAL----EYDGPVYIRL 154 (156)
T ss_pred HH-HHhc--CCCCCEEEecCCHHHHHHHHHHHH----hCCCCEEEEe
Confidence 22 2223 4555543 3457778777666665 3467998864
No 196
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=88.44 E-value=4.3 Score=44.18 Aligned_cols=95 Identities=22% Similarity=0.236 Sum_probs=62.1
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
-.++++..|=|.++. .-+|..|..-+.|||+|.-.-.... .........|...+++.+-....+|. ++.++..
T Consensus 71 ~~v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~~~~~itk~s~~v~--~~~~i~~ 143 (561)
T PRK06048 71 VGVCVATSGPGATNL---VTGIATAYMDSVPIVALTGQVPRSM--IGNDAFQEADITGITMPITKHNYLVQ--DAKDLPR 143 (561)
T ss_pred CeEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEeccCCccc--cCCCCccccchhhhccCcceEEEEeC--CHHHHHH
Confidence 345666678888874 5678899999999998874221110 00011112345555555544455664 6778889
Q ss_pred HHHHHHHHHHcc-CCCEEEEEEE
Q 013928 304 VAKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 304 a~~~Al~~ar~~-~gP~lIev~t 325 (434)
.+.+|++.++.+ .||+.|++-.
T Consensus 144 ~i~~A~~~A~~~~~GPV~l~iP~ 166 (561)
T PRK06048 144 IIKEAFHIASTGRPGPVLIDLPK 166 (561)
T ss_pred HHHHHHHHHhcCCCCeEEEecCh
Confidence 999999888876 5999999953
No 197
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=88.43 E-value=4 Score=44.55 Aligned_cols=94 Identities=16% Similarity=0.234 Sum_probs=63.3
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~ 302 (434)
-.++++..|=|.++. .-++..|..-+.|||+|.-.-. ..+... ..| ..|...+++.+-....+|+ ++.++.
T Consensus 74 ~gv~~~t~GPG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~~~~~-~~q--~~d~~~~~~~itk~s~~v~--~~~~~~ 145 (566)
T PRK07282 74 LGVAVVTSGPGATNA---ITGIADAMSDSVPLLVFTGQVARAGIGKD-AFQ--EADIVGITMPITKYNYQIR--ETADIP 145 (566)
T ss_pred CeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecccccccCCCC-Ccc--ccChhchhcCCCceeEEcC--CHHHHH
Confidence 345666679988874 4578888899999999985432 111111 111 1244455665555555665 677888
Q ss_pred HHHHHHHHHHHccC-CCEEEEEEE
Q 013928 303 EVAKEAIERARRGE-GPTLVECET 325 (434)
Q Consensus 303 ~a~~~Al~~ar~~~-gP~lIev~t 325 (434)
..+.+|++.++.+. ||+.|++-.
T Consensus 146 ~~l~~A~~~A~~~~~GPV~l~iP~ 169 (566)
T PRK07282 146 RIITEAVHIATTGRPGPVVIDLPK 169 (566)
T ss_pred HHHHHHHHHHhcCCCCeEEEeCCh
Confidence 99999999998874 999999854
No 198
>PRK11269 glyoxylate carboligase; Provisional
Probab=88.31 E-value=3 Score=45.75 Aligned_cols=93 Identities=18% Similarity=0.127 Sum_probs=62.0
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHH
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA 305 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~ 305 (434)
++++..|=|.++. .-++..|..-+.|||+|.-+-..........| ..|...+++.+-....+| .++.++...+
T Consensus 71 v~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q--~~d~~~l~~~itk~s~~v--~~~~~~~~~i 143 (591)
T PRK11269 71 VCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLHKEDFQ--AVDIESIAKPVTKWAVTV--REPALVPRVF 143 (591)
T ss_pred EEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCccc--ccChhhHhhcceeEEEEc--CCHHHHHHHH
Confidence 4555668888863 45788899999999999864332111111111 234555666554445556 4677899999
Q ss_pred HHHHHHHHccC-CCEEEEEEE
Q 013928 306 KEAIERARRGE-GPTLVECET 325 (434)
Q Consensus 306 ~~Al~~ar~~~-gP~lIev~t 325 (434)
++|++.++.+. ||+.|++-.
T Consensus 144 ~~A~~~A~~~~~GPV~l~iP~ 164 (591)
T PRK11269 144 QQAFHLMRSGRPGPVLIDLPF 164 (591)
T ss_pred HHHHHHHhhCCCCeEEEEeCh
Confidence 99999998764 899999954
No 199
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=88.16 E-value=4.3 Score=44.25 Aligned_cols=93 Identities=12% Similarity=-0.010 Sum_probs=57.7
Q ss_pred ceEEEE--eCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928 225 HVTLAF--FGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302 (434)
Q Consensus 225 ~~vv~~--~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~ 302 (434)
+..+|+ .|=|.++. .-++..|..-+.|||+|.-+-....-.....| ..|...+++.+-....+|+ ++.++.
T Consensus 66 ~~gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~Q--~~d~~~l~~~itk~~~~v~--~~~~~~ 138 (574)
T PRK09124 66 ELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQ--ETHPQELFRECSHYCELVS--NPEQLP 138 (574)
T ss_pred CcEEEEECCCCCHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCCCcc--ccChhhhcccceeeeEEeC--CHHHHH
Confidence 344554 57777762 34688888999999999854321110000111 1244455554433344554 667888
Q ss_pred HHHHHHHHHHHccCCCEEEEEE
Q 013928 303 EVAKEAIERARRGEGPTLVECE 324 (434)
Q Consensus 303 ~a~~~Al~~ar~~~gP~lIev~ 324 (434)
..+++|++.+....||+.|++-
T Consensus 139 ~~i~~A~~~A~~~~gPV~l~iP 160 (574)
T PRK09124 139 RVLAIAMRKAILNRGVAVVVLP 160 (574)
T ss_pred HHHHHHHHHHhcCCCCEEEEeC
Confidence 8888888888887899999984
No 200
>PRK05858 hypothetical protein; Provisional
Probab=88.02 E-value=3.4 Score=44.79 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=61.4
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc-CcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~-is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
.++++..|=|.++. .-++..|..-+.|||+|.-+-... ++.. ..| ..|...+++.+--...+|+ ++.++.+
T Consensus 69 gv~~~t~GpG~~n~---~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q--~~d~~~l~~~~tk~~~~v~--~~~~~~~ 140 (542)
T PRK05858 69 GVAVLTAGPGVTNG---MSAMAAAQFNQSPLVVLGGRAPALRWGMG-SLQ--EIDHVPFVAPVTKFAATAQ--SAENAGR 140 (542)
T ss_pred eEEEEcCCchHHHH---HHHHHHHHhcCCCEEEEeCCCCcccCCCC-CCc--ccchhhhhhhhhceEEEeC--CHHHHHH
Confidence 34555557777764 568889999999999887433211 1111 112 2345556666655566775 5678888
Q ss_pred HHHHHHHHHHcc-CCCEEEEEEE
Q 013928 304 VAKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 304 a~~~Al~~ar~~-~gP~lIev~t 325 (434)
.+.+|+..+..+ .||+.|++-.
T Consensus 141 ~i~~A~~~A~~~~~GPV~l~iP~ 163 (542)
T PRK05858 141 LVDQALQAAVTPHRGPVFVDFPM 163 (542)
T ss_pred HHHHHHHHHcCCCCCeEEEEcCh
Confidence 999999888775 5899999853
No 201
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=87.84 E-value=4.2 Score=44.30 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=61.7
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
-.++++..|=|.++. .-++..|..-+.|||+|.-.=.... .........|...+++.+--...+| ++++++..
T Consensus 67 ~gv~~~t~GpG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~~~~~~tk~s~~v--~~~~~i~~ 139 (563)
T PRK08527 67 VGVAIVTSGPGFTNA---VTGLATAYMDSIPLVLISGQVPNSL--IGTDAFQEIDAVGISRPCVKHNYLV--KSIEELPR 139 (563)
T ss_pred CEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccc--cCCCCCcccchhhhhhcccceEEEc--CCHHHHHH
Confidence 345666678888873 5578889999999999874221000 0000011124444555554444555 47889999
Q ss_pred HHHHHHHHHHccC-CCEEEEEEE
Q 013928 304 VAKEAIERARRGE-GPTLVECET 325 (434)
Q Consensus 304 a~~~Al~~ar~~~-gP~lIev~t 325 (434)
++++|++.++.+. ||+.|++-.
T Consensus 140 ~l~~A~~~a~s~~~GPV~l~iP~ 162 (563)
T PRK08527 140 ILKEAFYIARSGRPGPVHIDIPK 162 (563)
T ss_pred HHHHHHHHHhcCCCCcEEEEcCH
Confidence 9999999988765 899999853
No 202
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=87.83 E-value=3.5 Score=42.73 Aligned_cols=111 Identities=19% Similarity=0.193 Sum_probs=75.1
Q ss_pred ccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCch
Q 013928 199 EGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ 278 (434)
Q Consensus 199 ~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d 278 (434)
.++.+++|++++ + -+..-...|.|-..| +|.|.+|+-..+|+|+++.+..-. ++.........|
T Consensus 58 ~a~s~v~GA~~a-----------G-ar~~TaTSg~Gl~Lm---~E~l~~a~~~~~P~Vi~~~~R~~p-s~g~p~~~dq~D 121 (365)
T COG0674 58 GAISAVIGASYA-----------G-ARAFTATSGQGLLLM---AEALGLAAGTETPLVIVVAQRPLP-STGLPIKGDQSD 121 (365)
T ss_pred HHHHHHHHHHhh-----------C-cceEeecCCccHHHH---HHHHHHHHhccCCeEEEEeccCcC-CCcccccccHHH
Confidence 356778899888 2 344567778887666 899999999999999888887622 221111111223
Q ss_pred hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928 279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (434)
Q Consensus 279 ~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~ 328 (434)
+...-.+ ||+.+... |+.+.++....|...+.+..-|+++-..-++.
T Consensus 122 ~~~~r~~-g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~ 168 (365)
T COG0674 122 LMAARDT-GFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLA 168 (365)
T ss_pred HHHHHcc-CceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccchh
Confidence 3322122 78877766 77888888888888888888899887655543
No 203
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=87.33 E-value=5 Score=43.86 Aligned_cols=95 Identities=17% Similarity=0.070 Sum_probs=61.0
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~ 302 (434)
-.++++..|=|.++- .-++..|-.-+.|||+|.-.-.. ..+.. ..| ..|...+++.+-....+|. ++.++.
T Consensus 64 ~gv~~~t~GPG~~n~---~~~i~~A~~~~~Pvl~I~G~~~~~~~~~~-~~q--~id~~~~~~~vtk~~~~v~--~~~~~~ 135 (575)
T TIGR02720 64 IGVCFGSAGPGATHL---LNGLYDAKEDHVPVLALVGQVPTTGMNMD-TFQ--EMNENPIYADVAVYNRTAM--TAESLP 135 (575)
T ss_pred ceEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCC-Ccc--eechhhhhhhcceEEEEeC--CHHHHH
Confidence 345666678888763 55788999999999999854321 11111 111 1233444454443344554 566888
Q ss_pred HHHHHHHHHHHccCCCEEEEEEEe
Q 013928 303 EVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 303 ~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
..+.+|+..+....||+.|++-..
T Consensus 136 ~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 136 HVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred HHHHHHHHHHhhCCCCEEEEECcc
Confidence 888888888888889999999543
No 204
>PRK08617 acetolactate synthase; Reviewed
Probab=86.89 E-value=4.4 Score=43.91 Aligned_cols=93 Identities=19% Similarity=0.057 Sum_probs=62.0
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
.++++..|=|.++- .-++..|..-+.|||+|.-.... .++.. ..| ..|...+++.+--...+|+ +++++..
T Consensus 69 gv~~vt~GpG~~N~---l~gl~~A~~~~~PvlvisG~~~~~~~~~~-~~q--~~d~~~l~~~~tk~~~~v~--~~~~~~~ 140 (552)
T PRK08617 69 GVVLVTSGPGVSNL---ATGLVTATAEGDPVVAIGGQVKRADRLKR-THQ--SMDNVALFRPITKYSAEVQ--DPDNLSE 140 (552)
T ss_pred EEEEECCCCcHhHh---HHHHHHHhhcCCCEEEEecCCcccccCCC-Ccc--ccchhhhhhhhcceEEEeC--CHHHHHH
Confidence 34555568888873 55788899999999998753221 11111 111 2344556666655566665 6778889
Q ss_pred HHHHHHHHHHcc-CCCEEEEEEE
Q 013928 304 VAKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 304 a~~~Al~~ar~~-~gP~lIev~t 325 (434)
.+.+|++.+..+ .||+.|++-.
T Consensus 141 ~i~~A~~~a~~~~~GPV~l~iP~ 163 (552)
T PRK08617 141 VLANAFRAAESGRPGAAFVSLPQ 163 (552)
T ss_pred HHHHHHHHHccCCCCcEEEeChh
Confidence 999999888876 4899999853
No 205
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=86.78 E-value=4.9 Score=43.41 Aligned_cols=96 Identities=15% Similarity=0.006 Sum_probs=60.9
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
..++++..|=|.++. .-++..|..-+.|||+|+-.-.+........+ ...|...+++.+--...+| .++.++.+
T Consensus 74 ~~v~~vt~gpG~~N~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-~~~d~~~l~~~~tk~~~~v--~~~~~~~~ 147 (530)
T PRK07092 74 AAFVNLHSAAGVGNA---MGNLFTAFKNHTPLVITAGQQARSILPFEPFL-AAVQAAELPKPYVKWSIEP--ARAEDVPA 147 (530)
T ss_pred ceEEEeccCchHHHH---HHHHHHHhhcCCCEEEEecCCcccccCccchh-cccCHHHhhcccccceeec--CCHHHHHH
Confidence 344555568887753 56888999999999988754322111000001 1124445555554444455 46788889
Q ss_pred HHHHHHHHHHccC-CCEEEEEEE
Q 013928 304 VAKEAIERARRGE-GPTLVECET 325 (434)
Q Consensus 304 a~~~Al~~ar~~~-gP~lIev~t 325 (434)
.+.+|++.++.+. ||+.|++-.
T Consensus 148 ~i~~A~~~A~~~~~GPv~l~iP~ 170 (530)
T PRK07092 148 AIARAYHIAMQPPRGPVFVSIPY 170 (530)
T ss_pred HHHHHHHHHhcCCCCcEEEEccH
Confidence 9999999888874 899999953
No 206
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=86.65 E-value=5.3 Score=43.78 Aligned_cols=93 Identities=20% Similarity=0.275 Sum_probs=61.4
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
.++++..|=|.++. .-+|..|..-+.|||+|.-.-. +.++.. ..| ..|...+++.+--...+|+ +++++.+
T Consensus 78 gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-~~q--~~d~~~~~~~~tk~~~~v~--~~~~i~~ 149 (585)
T CHL00099 78 GVCFATSGPGATNL---VTGIATAQMDSVPLLVITGQVGRAFIGTD-AFQ--EVDIFGITLPIVKHSYVVR--DARDISR 149 (585)
T ss_pred EEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC-Ccc--ccchhhhhcCceeEEEEeC--CHHHHHH
Confidence 45566668888874 5578889999999999985322 111110 011 1244455555544455665 6778999
Q ss_pred HHHHHHHHHHcc-CCCEEEEEEE
Q 013928 304 VAKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 304 a~~~Al~~ar~~-~gP~lIev~t 325 (434)
.+++|++.++.+ .||+.|++-.
T Consensus 150 ~l~~A~~~A~~~~~GPV~l~iP~ 172 (585)
T CHL00099 150 IVAEAFYIAKHGRPGPVLIDIPK 172 (585)
T ss_pred HHHHHHHHHccCCCCeEEEecCh
Confidence 999999888876 4899999853
No 207
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=86.44 E-value=4.2 Score=42.67 Aligned_cols=107 Identities=18% Similarity=0.173 Sum_probs=71.2
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEEE-eCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCch
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAF-FGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ 278 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~-~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d 278 (434)
.+.+++|++++ +.++++. .|-|=..+ +|.|.+|+-..+|+|+++.+-+..-..+. .....|
T Consensus 68 A~~~~~GAs~a-------------GaRa~TaTS~~Gl~lm---~E~l~~aa~~~~P~V~~~~~R~~~~~~~i--~~d~~D 129 (407)
T PRK09622 68 AMSACVGAAAA-------------GGRVATATSSQGLALM---VEVLYQASGMRLPIVLNLVNRALAAPLNV--NGDHSD 129 (407)
T ss_pred HHHHHHHHHhh-------------CcCEEeecCcchHHHH---hhHHHHHHHhhCCEEEEEeccccCCCcCC--CchHHH
Confidence 46778888888 3344444 44443334 89999999999998888887762211111 111233
Q ss_pred hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHcc--CCCEEEEEEEec
Q 013928 279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG--EGPTLVECETYR 327 (434)
Q Consensus 279 ~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~--~gP~lIev~t~R 327 (434)
+.. ++.-| .+.+.-.++.++++-...|++.+.+. .-|+++-...++
T Consensus 130 ~~~-~r~~g--~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~ 177 (407)
T PRK09622 130 MYL-SRDSG--WISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFL 177 (407)
T ss_pred HHH-HhcCC--eEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhh
Confidence 332 23334 44566678999999999999988765 789999887765
No 208
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=86.43 E-value=5.4 Score=43.09 Aligned_cols=94 Identities=20% Similarity=0.069 Sum_probs=60.6
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a 304 (434)
.++++..|=|.++- .-++..|..-+.|||+|+-.-...... .......|...+++.+--...++ .++.++.+.
T Consensus 63 gv~~~t~GpG~~n~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk~~~~i--~~~~~~~~~ 135 (539)
T TIGR02418 63 GVALVTSGPGCSNL---VTGLATANSEGDPVVAIGGQVKRADLL--KLTHQSMDNVALFRPITKYSAEV--QDPDALSEV 135 (539)
T ss_pred eEEEECCCCCHhHH---HHHHHHHhhcCCCEEEEeCCCcccccc--cCcccccchhhhhhcceeeeeec--CCHHHHHHH
Confidence 45666668888763 557888999999999998532211100 01111234445555543334455 477788888
Q ss_pred HHHHHHHHHcc-CCCEEEEEEE
Q 013928 305 AKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 305 ~~~Al~~ar~~-~gP~lIev~t 325 (434)
+.+|++.+..+ .||+.|++-.
T Consensus 136 ~~~A~~~a~~~~~GPV~l~iP~ 157 (539)
T TIGR02418 136 VANAFRAAESGKPGAAFVSLPQ 157 (539)
T ss_pred HHHHHHHHhcCCCCCEEEEcCh
Confidence 99999888876 4899999854
No 209
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=86.43 E-value=3.7 Score=44.86 Aligned_cols=95 Identities=16% Similarity=0.193 Sum_probs=62.5
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccC-ccc-----ccccccC-chhhhccccCCCcEEEEeCCC
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMS-----HLRATSD-PQIYKKGPAFGMPGFHVDGMD 297 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~i-s~~-----~~~~~~~-~d~~~~a~a~Gi~~~~VdG~D 297 (434)
.++++..|=|.++. .-+|..|..-+.|||+|+-+-.+.. +.. ....... .|...+++.+--...+|+ +
T Consensus 77 gv~~~t~GPG~~N~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v~--~ 151 (569)
T PRK08327 77 QAVMVHVDVGTANA---LGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIR--R 151 (569)
T ss_pred eEEEEecCHHHHHH---HHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhcccC--C
Confidence 45666678888763 5578899999999999986533211 000 0000111 255555555544455665 6
Q ss_pred HHHHHHHHHHHHHHHHcc-CCCEEEEEE
Q 013928 298 VLKVREVAKEAIERARRG-EGPTLVECE 324 (434)
Q Consensus 298 ~~av~~a~~~Al~~ar~~-~gP~lIev~ 324 (434)
++++..++.+|++.+..+ .||+.|++-
T Consensus 152 ~~~~~~~l~~A~~~a~~~~~GPV~i~iP 179 (569)
T PRK08327 152 GDQIGEVVARAIQIAMSEPKGPVYLTLP 179 (569)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence 679999999999998876 699999985
No 210
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=86.40 E-value=4.9 Score=42.05 Aligned_cols=111 Identities=20% Similarity=0.169 Sum_probs=72.2
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEE-EEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCch
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTL-AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ 278 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv-~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d 278 (434)
.+.+++|++++ +.+++ +..|-|=.-+ +|.|.+|+-..+|+|+++-|-. ++.+........|
T Consensus 62 A~~~~~GAs~a-------------GaRa~TaTS~~Gl~lm---~E~l~~aag~~lP~V~vv~~R~--~~~p~~i~~d~~D 123 (394)
T PRK08367 62 AISACVGASAA-------------GVRTFTATASQGLALM---HEVLFIAAGMRLPIVMAIGNRA--LSAPINIWNDWQD 123 (394)
T ss_pred HHHHHHHHHhh-------------CCCeEeeeccchHHHH---hhHHHHHHHccCCEEEEECCCC--CCCCCCcCcchHH
Confidence 46778888888 33444 4445554434 8999999999999888886553 3333221111123
Q ss_pred hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHc--cCCCEEEEEEEecCCCCC
Q 013928 279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR--GEGPTLVECETYRFRGHS 332 (434)
Q Consensus 279 ~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~--~~gP~lIev~t~R~~gHs 332 (434)
+. -.+..||-.+. ..|+.++++-...|++.+.. ..-|+++-...++. +|.
T Consensus 124 ~~-~~rd~g~~~~~--a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~-sH~ 175 (394)
T PRK08367 124 TI-SQRDTGWMQFY--AENNQEALDLILIAFKVAEDERVLLPAMVGFDAFIL-THT 175 (394)
T ss_pred HH-hccccCeEEEe--CCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhh-cCc
Confidence 22 22345655443 47899999988999988874 44799999988875 443
No 211
>PLN02573 pyruvate decarboxylase
Probab=84.56 E-value=5.4 Score=43.69 Aligned_cols=97 Identities=14% Similarity=0.106 Sum_probs=59.8
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccC-cc--cccccccCc---hhhhccccCCCcEEEEeCCC
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GM--SHLRATSDP---QIYKKGPAFGMPGFHVDGMD 297 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~i-s~--~~~~~~~~~---d~~~~a~a~Gi~~~~VdG~D 297 (434)
..++++..|=|+++- .-.+..|..-+.|||+|.-.-.... +. ..+.....+ +....++.+-....+|. +
T Consensus 79 ~gv~~~t~GpG~~n~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~--~ 153 (578)
T PLN02573 79 VGACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVIN--N 153 (578)
T ss_pred CCeEEEecCccHHHH---HHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeC--C
Confidence 456677778888763 4467788899999999985432111 00 000000001 11234444444445555 5
Q ss_pred HHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928 298 VLKVREVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 298 ~~av~~a~~~Al~~ar~~~gP~lIev~t 325 (434)
+.++.+.+++|++.++...||+.|++-.
T Consensus 154 ~~~~~~~l~~A~~~A~~~~gPV~l~iP~ 181 (578)
T PLN02573 154 LEDAHELIDTAISTALKESKPVYISVSC 181 (578)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeeh
Confidence 6788888888999888888999999954
No 212
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=84.27 E-value=8.7 Score=42.06 Aligned_cols=93 Identities=17% Similarity=0.025 Sum_probs=57.7
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHH
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA 305 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~ 305 (434)
++++..|=|.++. .-++..|-.-+.|||+|.-.-....-.....| ..+...+++.+--...+|. ++.++...+
T Consensus 69 v~~v~~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q--e~d~~~l~~~~tk~~~~v~--~~~~~~~~i 141 (578)
T PRK06546 69 VCAGSCGPGNLHL---INGLYDAHRSGAPVLAIASHIPSAQIGSGFFQ--ETHPDRLFVECSGYCEMVS--SAEQAPRVL 141 (578)
T ss_pred EEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCccccCCCCcc--ccChhhhcccceeeEeEeC--CHHHHHHHH
Confidence 3444557787763 34688899999999999743211100000011 1233444554433344554 667888889
Q ss_pred HHHHHHHHccCCCEEEEEEE
Q 013928 306 KEAIERARRGEGPTLVECET 325 (434)
Q Consensus 306 ~~Al~~ar~~~gP~lIev~t 325 (434)
.+|++.+....||+.|++-.
T Consensus 142 ~~A~~~A~~~~GPV~l~lP~ 161 (578)
T PRK06546 142 HSAIQHAVAGGGVSVVTLPG 161 (578)
T ss_pred HHHHHHHhcCCCCEEEEcCh
Confidence 99999888878999999853
No 213
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=83.82 E-value=17 Score=36.04 Aligned_cols=86 Identities=17% Similarity=0.176 Sum_probs=59.5
Q ss_pred eEEEEeCccc--cccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccccc----ccccCc-hhhhccccCCCcEEEEeCCC
Q 013928 226 VTLAFFGDGT--CNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL----RATSDP-QIYKKGPAFGMPGFHVDGMD 297 (434)
Q Consensus 226 ~vv~~~GDGa--~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~----~~~~~~-d~~~~a~a~Gi~~~~VdG~D 297 (434)
.++.++.||. +++|..-..+.-|...++-++||+.+|. -.-|.-.. ...... .+......|++|++.|= .|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 7899999999 7788776778888888999888887664 12221100 001111 55677889999988665 47
Q ss_pred HHHHHHHHHHHHHHH
Q 013928 298 VLKVREVAKEAIERA 312 (434)
Q Consensus 298 ~~av~~a~~~Al~~a 312 (434)
+.++-.++..++++-
T Consensus 245 ~~~lp~~l~~~lrqw 259 (266)
T cd01460 245 LNQLPSVLSDALRQW 259 (266)
T ss_pred hhHhHHHHHHHHHHH
Confidence 888888888777653
No 214
>PRK06154 hypothetical protein; Provisional
Probab=82.68 E-value=7.1 Score=42.65 Aligned_cols=92 Identities=20% Similarity=0.185 Sum_probs=58.6
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHH
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA 305 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~ 305 (434)
++++..|=|.++. .-+|..|..-+.|||+|+-...... .......+...+++.+--...+|+ ++.++.+.+
T Consensus 84 v~~~t~GPG~~N~---~~gla~A~~~~~Pvl~i~G~~~~~~----~~~~~~~d~~~~~~~vtk~~~~v~--~~~~~~~~i 154 (565)
T PRK06154 84 VFAVQYGPGAENA---FGGVAQAYGDSVPVLFLPTGYPRGS----TDVAPNFESLRNYRHITKWCEQVT--LPDEVPELM 154 (565)
T ss_pred EEEECCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCccc----ccCCCCcchhhhHhhcceeEEECC--CHHHHHHHH
Confidence 3344468888763 5578899999999999984332111 001111233344444433344554 677888999
Q ss_pred HHHHHHHHcc-CCCEEEEEEEe
Q 013928 306 KEAIERARRG-EGPTLVECETY 326 (434)
Q Consensus 306 ~~Al~~ar~~-~gP~lIev~t~ 326 (434)
.+|++.++.+ .||+.|++-..
T Consensus 155 ~~A~~~A~s~~~GPV~l~iP~D 176 (565)
T PRK06154 155 RRAFTRLRNGRPGPVVLELPVD 176 (565)
T ss_pred HHHHHHHhcCCCceEEEecchH
Confidence 9999988875 69999999543
No 215
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=81.53 E-value=4.1 Score=42.84 Aligned_cols=96 Identities=10% Similarity=0.078 Sum_probs=57.2
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCC----H
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMD----V 298 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D----~ 298 (434)
-.++++..|=|.++. .-++..|-.-+.|||+|.-.-.. ..+.. ..| ..|...+++.+-....+|...+ +
T Consensus 64 ~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q--~~d~~~~~~~~tk~~~~v~~~~~~~~~ 137 (432)
T TIGR00173 64 PVAVVCTSGTAVANL---LPAVIEASYSGVPLIVLTADRPPELRGCG-ANQ--TIDQPGLFGSYVRWSLDLPLPEADEPL 137 (432)
T ss_pred CEEEEECCcchHhhh---hHHHHHhcccCCcEEEEeCCCCHHHhCCC-CCc--ccchhhHHhhccceeeeCCCCCccccH
Confidence 345666668887763 45788888999999999753221 11100 011 1234444554444445554322 1
Q ss_pred HHHHHHHHHHHHHHHcc-CCCEEEEEEE
Q 013928 299 LKVREVAKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 299 ~av~~a~~~Al~~ar~~-~gP~lIev~t 325 (434)
..+...+++|++.+..+ .||+.|++-.
T Consensus 138 ~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (432)
T TIGR00173 138 AYLRSTVDRAVAQAQGPPPGPVHINVPF 165 (432)
T ss_pred HHHHHHHHHHHHHhhCCCCCCEEEeCCC
Confidence 22667788888888775 4899999954
No 216
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=80.01 E-value=10 Score=40.11 Aligned_cols=94 Identities=23% Similarity=0.175 Sum_probs=59.0
Q ss_pred CCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccC-CCcEEEEeCCCHHH
Q 013928 222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAF-GMPGFHVDGMDVLK 300 (434)
Q Consensus 222 ~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~-Gi~~~~VdG~D~~a 300 (434)
+...+|++..|-|+++- ..-|.-|-.-+.|+|++- .|..-+..-.+.....|+..+.+++ .|.+. -.|+++
T Consensus 153 gKPGvvlvTSGPGATNv---vtp~ADAlaDg~PlVvft--GQVptsaIGtDAFQEadiVgisRScTKwNvm---VkdVed 224 (675)
T KOG4166|consen 153 GKPGVVLVTSGPGATNV---VTPLADALADGVPLVVFT--GQVPTSAIGTDAFQEADIVGISRSCTKWNVM---VKDVED 224 (675)
T ss_pred CCCcEEEEecCCCcccc---cchhhHHhhcCCcEEEEe--cccchhhcccchhccCCeeeeeeccceehee---eecHHH
Confidence 45678999999999973 234666667788866543 3322121111222223444444443 23333 248889
Q ss_pred HHHHHHHHHHHHHcc-CCCEEEEE
Q 013928 301 VREVAKEAIERARRG-EGPTLVEC 323 (434)
Q Consensus 301 v~~a~~~Al~~ar~~-~gP~lIev 323 (434)
+-+-+.+|++.+-.+ .||+|+++
T Consensus 225 lPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 225 LPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred hhHHHHHHhhhhccCCCCCeEeeC
Confidence 999999999988776 58999998
No 217
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=79.72 E-value=12 Score=41.55 Aligned_cols=102 Identities=15% Similarity=0.180 Sum_probs=57.8
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc-ccccccccCch
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG-MSHLRATSDPQ 278 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is-~~~~~~~~~~d 278 (434)
.+++|.|+|+. +.++|+.+ =+.|.+-.+-+-.+.++..++||++++...++.-. .+++.+ ..|
T Consensus 364 ~vg~AaGlA~~-------------G~~Pvv~~-~a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~--~~d 427 (617)
T TIGR00204 364 AVTFAAGMAIE-------------GYKPFVAI-YSTFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQG--AFD 427 (617)
T ss_pred HHHHHHHHHHC-------------CCEEEEEe-cHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCccccc--chH
Confidence 34556676654 33444444 56676533334446788999999999887764311 122211 233
Q ss_pred hhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 279 IYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 279 ~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
++ ---.+|.++| .-.|+.++...++.|++ ..++|++|-.
T Consensus 428 ia---~lr~iPgl~V~~Psd~~e~~~~l~~a~~---~~~~Pv~ir~ 467 (617)
T TIGR00204 428 IS---YLRCIPNMVIMAPSDENELRQMLYTGYH---YDDGPIAVRY 467 (617)
T ss_pred HH---HHhcCCCcEEEeeCCHHHHHHHHHHHHh---CCCCCEEEEE
Confidence 32 2224566544 33477777776666653 2348998855
No 218
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=78.70 E-value=14 Score=33.86 Aligned_cols=98 Identities=23% Similarity=0.198 Sum_probs=53.0
Q ss_pred chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHH-HHHHHc--------CCCeEEEEEcCCccCccccc
Q 013928 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECL-NMAALW--------KLPIVFVVENNLWAIGMSHL 271 (434)
Q Consensus 201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaL-n~A~~~--------~LPvI~VV~NN~y~is~~~~ 271 (434)
++.|.|+|+. +.++|+.+.=+.|..- .++-+ +-++.+ ++||++++..-+++...+++
T Consensus 57 vg~AaGlA~~-------------G~~pi~~~~~a~Fl~r-a~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~th 122 (167)
T cd07036 57 VGLAVGAAMN-------------GLRPIVEIMFADFALP-AFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQH 122 (167)
T ss_pred HHHHHHHHHc-------------CCEEEEEeehHHHHHH-HHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhh
Confidence 4556666654 3456654444445432 24444 444444 59999998665544333321
Q ss_pred ccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEE
Q 013928 272 RATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVE 322 (434)
Q Consensus 272 ~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIe 322 (434)
+..++ .+.+ .+|+++| .-.|+.+....++.++ +.++|++|-
T Consensus 123 ---s~~~~-a~lr--~iPg~~V~~Psd~~e~~~~l~~~~----~~~~P~~~~ 164 (167)
T cd07036 123 ---SQSLE-AWFA--HIPGLKVVAPSTPYDAKGLLKAAI----RDDDPVIFL 164 (167)
T ss_pred ---hhhHH-HHHh--cCCCCEEEeeCCHHHHHHHHHHHH----hCCCcEEEE
Confidence 22332 3334 3455543 2347777777666655 456899874
No 219
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=78.37 E-value=5.3 Score=35.96 Aligned_cols=107 Identities=14% Similarity=0.175 Sum_probs=66.1
Q ss_pred ccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCcccc-ccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccc-cC
Q 013928 199 EGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT-SD 276 (434)
Q Consensus 199 ~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~-~~ 276 (434)
.+++++.|+.+| ++++..++-..+. ++=...++ +-..+++|+++++.--++-..... .|. ..
T Consensus 53 eg~GIcAGa~lA-------------Gkk~ailmQnsGlGNsiNal~S--L~~ty~iPl~ml~ShRG~~~E~i~-AQVpmG 116 (172)
T COG4032 53 EGVGICAGAYLA-------------GKKPAILMQNSGLGNSINALAS--LYVTYKIPLLMLASHRGVLKEGIE-AQVPMG 116 (172)
T ss_pred cceeeehhhhhc-------------CCCcEEEEeccCcchHHHHHHH--HHHHhccchhhhhhccchhhcCCc-cccccc
Confidence 456778999998 2223333333323 22112233 335899998888876663222221 222 12
Q ss_pred chhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 277 PQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 277 ~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
...-++.+..++|.+++.+. ++-+..+..+...+.+...|+.+-+
T Consensus 117 r~~~kiLe~~~lpt~t~~~p--~Ea~~li~~~~~~a~~~s~pv~vll 161 (172)
T COG4032 117 RALPKILEGLELPTYTIIGP--EEALPLIENAILDAFENSRPVAVLL 161 (172)
T ss_pred hhhHHHHhhcCCcccccCCH--HHHHHHHHHHHHHHHHcCCceEEEe
Confidence 34556667789999999875 5767788888888888888987655
No 220
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=78.15 E-value=12 Score=41.70 Aligned_cols=80 Identities=23% Similarity=0.277 Sum_probs=50.0
Q ss_pred ccccchHHHHHHHHHHcCCCeEEEEEcCCccCcc--cccccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHH
Q 013928 235 TCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM--SHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIER 311 (434)
Q Consensus 235 a~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~--~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ 311 (434)
.|.+ -.++.+.+++..++||++|....+++.+. +++ | +..|++- .+ .+|.++| .-.|..++..+++.+++
T Consensus 430 ~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~TH-q-~iedia~-lr--~iPn~~v~~PaD~~E~~~~~~~a~~- 502 (653)
T TIGR00232 430 MFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTH-Q-PIEQLAS-LR--AIPNLSVWRPCDGNETAAAWKYALE- 502 (653)
T ss_pred HHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCccc-C-CHHHHHH-Hh--cCCCCEEEeeCCHHHHHHHHHHHHh-
Confidence 5544 45788899999999999999877665543 222 1 2233322 22 4554443 23477787777766653
Q ss_pred HHccCCCEEEEE
Q 013928 312 ARRGEGPTLVEC 323 (434)
Q Consensus 312 ar~~~gP~lIev 323 (434)
..++|+.|-.
T Consensus 503 --~~~gP~~irl 512 (653)
T TIGR00232 503 --SQDGPTALIL 512 (653)
T ss_pred --cCCCcEEEEE
Confidence 4578998854
No 221
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=76.53 E-value=13 Score=41.05 Aligned_cols=108 Identities=19% Similarity=0.136 Sum_probs=65.9
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEE-EEeCccccccchHHHHHHHHHH--cCCCeEEEEEcCCccCcccccccccC
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTL-AFFGDGTCNNGQFFECLNMAAL--WKLPIVFVVENNLWAIGMSHLRATSD 276 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv-~~~GDGa~~~G~~~EaLn~A~~--~~LPvI~VV~NN~y~is~~~~~~~~~ 276 (434)
.+.+|+|+++| +.+++ +.-|-|=.-+ .|.|..++. ..+|+|+++-|.. +-+.....|
T Consensus 58 a~~~~~GAs~a-------------G~ra~t~ts~~Gl~~~---~e~l~~~~~~g~~~~iV~~~~~~~-gp~~~~~~q--- 117 (595)
T TIGR03336 58 AVEVAAGAAWS-------------GLRAFCTMKHVGLNVA---ADPLMTLAYTGVKGGLVVVVADDP-SMHSSQNEQ--- 117 (595)
T ss_pred HHHHHHHHHhc-------------CcceEEEccCCchhhh---HHHhhhhhhhcCcCceEEEEccCC-CCccchhhH---
Confidence 34578898888 33344 4444443223 556655553 3566777776653 222111111
Q ss_pred chhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCC
Q 013928 277 PQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 332 (434)
Q Consensus 277 ~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs 332 (434)
.|.. .++..+|+++ +-.++.++++...+|++.+.+.+-|++|-... .-+|+
T Consensus 118 ~d~~-~~~~~~~~vl--~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~--~l~h~ 168 (595)
T TIGR03336 118 DTRH-YAKFAKIPCL--EPSTPQEAKDMVKYAFELSEKFGLPVILRPTT--RISHM 168 (595)
T ss_pred hHHH-HHHhcCCeEE--CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEee--eeccc
Confidence 2321 2344577744 45578999999999999999999999999875 44554
No 222
>PTZ00089 transketolase; Provisional
Probab=73.96 E-value=19 Score=40.34 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=55.5
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEE-eCCCHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVRE 303 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~ 303 (434)
+++++.+ ..|.+ -.++.+.+++..++||+||+...+++.+..- .+. ..+.+++---.+|.+.| .-.|..++..
T Consensus 429 ~P~~~tf--~~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG--~TH-q~iedia~lR~iPn~~V~~PaD~~E~~~ 502 (661)
T PTZ00089 429 IPFGATF--LNFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDG--PTH-QPVETLALLRATPNLLVIRPADGTETSG 502 (661)
T ss_pred eEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCC--CCc-ccHHHHHHHhcCCCcEEEecCCHHHHHH
Confidence 4455554 36765 5688899999999999999987775554321 111 12333333334565544 2347777777
Q ss_pred HHHHHHHHHHccCCCEEEEE
Q 013928 304 VAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 304 a~~~Al~~ar~~~gP~lIev 323 (434)
+++.|+. ..++|+.|-.
T Consensus 503 ~l~~al~---~~~gP~~irl 519 (661)
T PTZ00089 503 AYALALA---NAKTPTILCL 519 (661)
T ss_pred HHHHHHH---cCCCCEEEEe
Confidence 6666553 3568999875
No 223
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=73.06 E-value=31 Score=31.59 Aligned_cols=103 Identities=19% Similarity=0.194 Sum_probs=54.7
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCC-CceEEEEeCcccccc---chHHHHHH-HHHHcCCCeEEEEEcCCccC--cccccc
Q 013928 200 GIPVATGAAFTSKYRREVLKEADC-DHVTLAFFGDGTCNN---GQFFECLN-MAALWKLPIVFVVENNLWAI--GMSHLR 272 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~-d~~vv~~~GDGa~~~---G~~~EaLn-~A~~~~LPvI~VV~NN~y~i--s~~~~~ 272 (434)
.++.|.|+|++ ++ ..+++..++| |.. -..++.+. .....++|+. |+..-+++. ...++
T Consensus 60 ~vg~a~GlA~~-----------G~~~~~~~~~f~~--F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH- 124 (178)
T PF02779_consen 60 MVGMAAGLALA-----------GGLRPPVESTFAD--FLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTH- 124 (178)
T ss_dssp HHHHHHHHHHH-----------SSSEEEEEEEEGG--GGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTT-
T ss_pred ccceeeeeeec-----------ccccceeEeeccc--cccccchhhhhhhhhhhhcccceec-ceeecCcccccccccc-
Confidence 45677888877 42 3344455544 333 22344554 7889999988 555444333 22222
Q ss_pred cccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 273 ATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 273 ~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
.+..+ ....+ .+|.++| .-.|+.++...++.+++. +.++|++|-.
T Consensus 125 -~s~~d-~~~~~--~iPg~~v~~Psd~~e~~~~l~~a~~~--~~~~P~~ir~ 170 (178)
T PF02779_consen 125 -HSIED-EAILR--SIPGMKVVVPSDPAEAKGLLRAAIRR--ESDGPVYIRE 170 (178)
T ss_dssp -SSSSH-HHHHH--TSTTEEEEE-SSHHHHHHHHHHHHHS--SSSSEEEEEE
T ss_pred -ccccc-ccccc--cccccccccCCCHHHHHHHHHHHHHh--CCCCeEEEEe
Confidence 12223 23333 3444433 345777887777766531 2679999865
No 224
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=73.03 E-value=10 Score=46.96 Aligned_cols=93 Identities=14% Similarity=0.119 Sum_probs=58.8
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc-CcccccccccCchhhhccccCCCcEEEEeCCCHHH--
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLK-- 300 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~-is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~a-- 300 (434)
..+++|..|=|.++. .-++..|..-+.|+|+|.-+-... .+.. ..|. .|...+++.+--...+|. ++.+
T Consensus 365 pgV~i~TsGPG~tN~---l~av~eA~~d~vPlLvItgd~p~~~~~~g-a~Q~--iDq~~lf~pvtK~s~~v~--~p~~~~ 436 (1655)
T PLN02980 365 PAVVITSSGTAVSNL---LPAVVEASQDFVPLLLLTADRPPELQDAG-ANQA--INQVNHFGSFVRFFFNLP--PPTDLI 436 (1655)
T ss_pred CEEEEEeCcHHHHHH---HHHHHHHhhcCCCEEEEeCCCCHHHhcCC-CCcc--cchhhHHHhhhheeecCC--Cccchh
Confidence 446667778887763 668999999999999998654321 1111 1121 244445555444455553 2223
Q ss_pred ----HHHHHHHHHHHHHcc-CCCEEEEEE
Q 013928 301 ----VREVAKEAIERARRG-EGPTLVECE 324 (434)
Q Consensus 301 ----v~~a~~~Al~~ar~~-~gP~lIev~ 324 (434)
+..++++|+..++.+ .||+.|++-
T Consensus 437 ~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 437 PARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 346778888888777 499999996
No 225
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=69.27 E-value=29 Score=38.73 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=50.5
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccC-cccccccccCchhhhccccCCCcEEEEe-CCCHHHHHH
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSHLRATSDPQIYKKGPAFGMPGFHVD-GMDVLKVRE 303 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~i-s~~~~~~~~~~d~~~~a~a~Gi~~~~Vd-G~D~~av~~ 303 (434)
++||.+ =+.|.+-.+-+-.+.++..++||+|++...++.- ..+++.+ ..|++ -.-.+|.++|= -.|+.++..
T Consensus 424 rPvv~~-fs~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~~--~~Dia---~lr~iPnl~V~~Psd~~E~~~ 497 (641)
T PLN02234 424 KPFCTI-YSSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCG--AFDVT---FMACLPNMIVMAPSDEAELFN 497 (641)
T ss_pred eEEEEe-hHHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCccccc--cHHHH---HHhcCCCCEEEeeCCHHHHHH
Confidence 444444 3456553344455777899999999997766421 1122211 22322 22245555442 347777777
Q ss_pred HHHHHHHHHHccCCCEEEEEEEecCC
Q 013928 304 VAKEAIERARRGEGPTLVECETYRFR 329 (434)
Q Consensus 304 a~~~Al~~ar~~~gP~lIev~t~R~~ 329 (434)
.++.|+. ..++|++| ...|..
T Consensus 498 ~l~~a~~---~~~~Pv~i--r~~R~~ 518 (641)
T PLN02234 498 MVATAAA---IDDRPSCF--RYHRGN 518 (641)
T ss_pred HHHHHHh---CCCCCEEE--Eeeccc
Confidence 6665542 34589988 444443
No 226
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=69.07 E-value=27 Score=38.92 Aligned_cols=89 Identities=19% Similarity=0.241 Sum_probs=50.4
Q ss_pred ceEEEEeCccccccchHHHHH-HHHHHcCCCeEEEEEcCCcc-CcccccccccCchhhhccccCCCcEEEE-eCCCHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECL-NMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKV 301 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaL-n~A~~~~LPvI~VV~NN~y~-is~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av 301 (434)
+++++++ ..|.+ -.++.+ +.++..++||+|++...++. ...+++.+ ..|++- --.+|.++| .-.|..++
T Consensus 386 ~P~v~~f--~~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~--~~dia~---lr~iPnl~V~~Psd~~e~ 457 (641)
T PRK12571 386 KPFCAVY--STFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAG--AFDLAF---LTNLPNMTVMAPRDEAEL 457 (641)
T ss_pred EEEEEeh--HHHHH-HHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccc--cHHHHH---HhcCCCCEEEeeCCHHHH
Confidence 3444444 34655 345555 66899999999998666532 11122211 223322 224555543 23477788
Q ss_pred HHHHHHHHHHHHccCCCEEEEEE
Q 013928 302 REVAKEAIERARRGEGPTLVECE 324 (434)
Q Consensus 302 ~~a~~~Al~~ar~~~gP~lIev~ 324 (434)
..+++.|++ ..++|++|-..
T Consensus 458 ~~~l~~a~~---~~~~P~~ir~~ 477 (641)
T PRK12571 458 RHMLRTAAA---HDDGPIAVRFP 477 (641)
T ss_pred HHHHHHHHh---CCCCcEEEEEe
Confidence 777776653 24699998653
No 227
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=68.89 E-value=29 Score=37.23 Aligned_cols=99 Identities=23% Similarity=0.222 Sum_probs=54.7
Q ss_pred chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHH--------HcCCCeEEEEEcCCccCcccccc
Q 013928 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAA--------LWKLPIVFVVENNLWAIGMSHLR 272 (434)
Q Consensus 201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~--------~~~LPvI~VV~NN~y~is~~~~~ 272 (434)
+++|+|+|++ + -++++.++.= .|.+=.+-+-.|-++ .+++||+|+..|.++.....
T Consensus 202 vg~AaGlA~~-----------G-~rPiv~~~~~-~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~--- 265 (464)
T PRK11892 202 AGIGVGAAFA-----------G-LKPIVEFMTF-NFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA--- 265 (464)
T ss_pred HHHHHHHHhC-----------C-CEEEEEEehH-HHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC---
Confidence 5667777776 2 2344444321 122222344556777 89999999988776433222
Q ss_pred cccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEE
Q 013928 273 ATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVE 322 (434)
Q Consensus 273 ~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIe 322 (434)
+.+..++ .+.+ .+|+++| .-.|..+....++.|+ ..++|++|-
T Consensus 266 hhs~~d~-a~~~--~iPgl~V~~P~d~~d~~~ll~~ai----~~~~Pv~il 309 (464)
T PRK11892 266 QHSQDYA-AWYS--HIPGLKVVAPYSAADAKGLLKAAI----RDPNPVIFL 309 (464)
T ss_pred ccccCHH-HHHh--hCCCCEEEEeCCHHHHHHHHHHHh----hCCCcEEEE
Confidence 2222232 3333 4555544 2346677777666665 346899873
No 228
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=67.75 E-value=37 Score=37.26 Aligned_cols=100 Identities=15% Similarity=0.200 Sum_probs=56.5
Q ss_pred chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHH-HHHHHHHcCCCeEEEEEcCCccCc-ccccccccCch
Q 013928 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFE-CLNMAALWKLPIVFVVENNLWAIG-MSHLRATSDPQ 278 (434)
Q Consensus 201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~E-aLn~A~~~~LPvI~VV~NN~y~is-~~~~~~~~~~d 278 (434)
+++|.|+|+. +.++|+.+ =..|.. -.++ -.+.++..++||+++....++... .+++ + ...|
T Consensus 334 vg~A~GlA~~-------------G~~p~~~~-f~~F~~-ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH-~-~~ed 396 (580)
T PRK05444 334 VTFAAGLATE-------------GLKPVVAI-YSTFLQ-RAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTH-Q-GAFD 396 (580)
T ss_pred HHHHHHHHHC-------------CCeeEEEe-eHHHHH-HHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccc-c-ccHH
Confidence 4556676664 23444444 445654 3344 556688999999999986664321 1111 1 1233
Q ss_pred hhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 279 IYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 279 ~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
++-. -.+|.++| .-.|+.++..+++.|+. ..++|++|-.
T Consensus 397 ia~l---r~iP~l~V~~Psd~~e~~~~l~~a~~---~~~~P~~ir~ 436 (580)
T PRK05444 397 LSYL---RCIPNMVIMAPSDENELRQMLYTALA---YDDGPIAIRY 436 (580)
T ss_pred HHHH---hcCCCCEEEeeCCHHHHHHHHHHHHh---CCCCcEEEEe
Confidence 3222 24555543 34577788877776663 2368998855
No 229
>PLN02790 transketolase
Probab=67.61 E-value=32 Score=38.43 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCC
Q 013928 240 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGP 318 (434)
Q Consensus 240 ~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP 318 (434)
...+++.+++..++||+||+...+.+.+..- .+ -..+.+++---.+|.+.| .-.|..++..+++.|++ ..++|
T Consensus 431 ~~~~~ir~~al~~lpV~~v~thdg~~~G~DG--~T-Hq~iedla~lR~iPnl~V~~PaD~~E~~~~l~~al~---~~~gP 504 (654)
T PLN02790 431 YMRAAMRLSALSEAGVIYVMTHDSIGLGEDG--PT-HQPIEHLASLRAMPNILMLRPADGNETAGAYKVAVT---NRKRP 504 (654)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCceeecCCC--CC-cccHHHHHHhcCCCCcEEEeCCCHHHHHHHHHHHHH---cCCCC
Confidence 3467888999999999999988765543211 11 112344443345666654 33477777776666653 24689
Q ss_pred EEEEE
Q 013928 319 TLVEC 323 (434)
Q Consensus 319 ~lIev 323 (434)
+.|-.
T Consensus 505 ~~irl 509 (654)
T PLN02790 505 TVLAL 509 (654)
T ss_pred EEEEe
Confidence 88865
No 230
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=66.55 E-value=31 Score=37.36 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=49.5
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc-Ccc--cccccc---cCchhhhccccCCCcEEEEeCCCH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGM--SHLRAT---SDPQIYKKGPAFGMPGFHVDGMDV 298 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~-is~--~~~~~~---~~~d~~~~a~a~Gi~~~~VdG~D~ 298 (434)
.++++..|=|+++. .-++..|..-+.|||+|.-.-... ... ..+... ...++.+.++..-.....++-.
T Consensus 65 gv~~~t~GPG~~n~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~itk~~~~~~~~-- 139 (539)
T TIGR03393 65 AALLTTFGVGELSA---INGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFYRMAAEVTVAQAVLTEQ-- 139 (539)
T ss_pred eEEEEecCccHHHH---hhHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHHHHHhhceEEEEEEeChh--
Confidence 45566679998873 446778999999999998532210 000 000000 0112223333222222233323
Q ss_pred HHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 299 LKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 299 ~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
++.+.+.+|++.+....||+.|++-..
T Consensus 140 -~~~~~i~~a~~~A~~~~gPv~l~iP~D 166 (539)
T TIGR03393 140 -NATAEIDRVITTALRERRPGYLMLPVD 166 (539)
T ss_pred -hhHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 333444455555555678999999543
No 231
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=66.41 E-value=23 Score=38.94 Aligned_cols=89 Identities=10% Similarity=-0.016 Sum_probs=51.2
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEE-eCCCHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVRE 303 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~ 303 (434)
+++++.+.+ |.+-.+-+-.+-++..++||+|++...++....+++.+ ..|++- --.+|.++| .-.|..++..
T Consensus 345 ~Pvv~~fs~--Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~~--~~Dia~---lr~iPnl~V~~P~d~~e~~~ 417 (581)
T PRK12315 345 RPVIFVNST--FLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHLG--IFDIPM---ISNIPNLVYLAPTTKEELIA 417 (581)
T ss_pred eEEEEeeHH--HHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCccccc--cHHHHH---HhcCCCCEEEecCCHHHHHH
Confidence 445455544 54433333455678999999999986654432233221 233322 224566654 3457778877
Q ss_pred HHHHHHHHHHccCCCEEEEE
Q 013928 304 VAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 304 a~~~Al~~ar~~~gP~lIev 323 (434)
.++.|+. ..++|+.|-.
T Consensus 418 ~l~~a~~---~~~gP~~ir~ 434 (581)
T PRK12315 418 MLEWALT---QHEHPVAIRV 434 (581)
T ss_pred HHHHHHh---CCCCcEEEEE
Confidence 7766653 2368999866
No 232
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=65.52 E-value=42 Score=37.78 Aligned_cols=90 Identities=12% Similarity=0.082 Sum_probs=51.3
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc-ccccccccCchhhhccccCCCcEEEEe-CCCHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG-MSHLRATSDPQIYKKGPAFGMPGFHVD-GMDVLKV 301 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is-~~~~~~~~~~d~~~~a~a~Gi~~~~Vd-G~D~~av 301 (434)
-+++++++ ..|.+=.+-+-++-++..++||+|++...++... .+++.+ ..|++- --.+|.++|= -.|..++
T Consensus 422 ~kPvv~~f--s~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~--~~Dia~---lr~iPnl~V~~Psd~~E~ 494 (677)
T PLN02582 422 LKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCG--AFDVTY---MACLPNMVVMAPSDEAEL 494 (677)
T ss_pred CeEEEEec--HHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccc--cHHHHH---HhcCCCCEEEeeCCHHHH
Confidence 34555554 4565533344667888999999999987664221 122211 233322 1245555442 3477777
Q ss_pred HHHHHHHHHHHHccCCCEEEEE
Q 013928 302 REVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 302 ~~a~~~Al~~ar~~~gP~lIev 323 (434)
...++.|+. ..++|++|..
T Consensus 495 ~~~l~~al~---~~~gPv~IR~ 513 (677)
T PLN02582 495 FHMVATAAA---IDDRPSCFRY 513 (677)
T ss_pred HHHHHHHHh---CCCCCEEEEE
Confidence 776666653 2358999854
No 233
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=65.28 E-value=45 Score=34.39 Aligned_cols=100 Identities=23% Similarity=0.212 Sum_probs=53.0
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEEEe-CccccccchHHHHHHHHHHcC--------CCeEEEEEcCCccCcccc
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFF-GDGTCNNGQFFECLNMAALWK--------LPIVFVVENNLWAIGMSH 270 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~-GDGa~~~G~~~EaLn~A~~~~--------LPvI~VV~NN~y~is~~~ 270 (434)
.++.|.|+|++ + .++++++. .| |.+=.+-+-.+-++.++ +||+|+..+ +...+...
T Consensus 86 ~vg~AaGlA~~-----------G-~~P~v~~~~~~--f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g~G~ 150 (356)
T PLN02683 86 FTGIGVGAAYA-----------G-LKPVVEFMTFN--FSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAGVGA 150 (356)
T ss_pred HHHHHHHHHHC-----------C-CEEEEEEehhh--HHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCCCCC
Confidence 45667777765 2 23444443 32 22222334456667666 999999877 43333211
Q ss_pred cccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 271 LRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 271 ~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
.++ ..+. ...+ .+|+++| .-.|..++...++.|+ ..++|+.|-.
T Consensus 151 tH~--~~~~-a~lr--~iPnl~V~~Pad~~e~~~~l~~a~----~~~gPv~ir~ 195 (356)
T PLN02683 151 QHS--QCFA-AWYS--SVPGLKVLAPYSSEDARGLLKAAI----RDPDPVVFLE 195 (356)
T ss_pred ccc--cCHH-HHHh--cCCCCEEEEeCCHHHHHHHHHHHH----hCCCcEEEEE
Confidence 111 1222 3333 3555543 2347777777666655 3568999853
No 234
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=61.77 E-value=56 Score=39.16 Aligned_cols=113 Identities=18% Similarity=0.068 Sum_probs=67.0
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchh
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 279 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~ 279 (434)
.+.+++|++.+ + -+...+..|-|=+.| .|.|..++-..+|+|++|.+-.+.- ++......-.|+
T Consensus 63 A~~av~GA~~a-----------G-ara~T~TSs~GL~LM---~e~l~~~ag~~~P~Vi~va~R~~~~-~~~~i~~dh~Dv 126 (1165)
T TIGR02176 63 AAGAVHGALQT-----------G-ALTTTFTASQGLLLM---IPNMYKIAGELLPCVFHVSARAIAA-HALSIFGDHQDV 126 (1165)
T ss_pred HHHHHHhHhhc-----------C-CCEEEecChhHHHHH---HHHHHHHHhccCCEEEEEecCCCCC-CCCccCCCchHH
Confidence 34567776665 2 233444455554444 7788666666899888888754321 111101011233
Q ss_pred hhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCC
Q 013928 280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 332 (434)
Q Consensus 280 ~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs 332 (434)
..++.-|| +.+-..++.++++-...|...+.+.+.|+++-...++. +|.
T Consensus 127 -~~~R~~G~--ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~t-sh~ 175 (1165)
T TIGR02176 127 -MAARQTGF--AMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRT-SHE 175 (1165)
T ss_pred -HHhhcCCe--EEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCcee-ccc
Confidence 23355666 44445688888888888888887788898887765553 454
No 235
>PRK12753 transketolase; Reviewed
Probab=61.30 E-value=53 Score=36.86 Aligned_cols=83 Identities=22% Similarity=0.137 Sum_probs=52.2
Q ss_pred cccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEe-CCCHHHHHHHHHHHHHHH
Q 013928 234 GTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD-GMDVLKVREVAKEAIERA 312 (434)
Q Consensus 234 Ga~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~Vd-G~D~~av~~a~~~Al~~a 312 (434)
+.|.+ -.++.+.+++..++||++|....+++++..-..- ..+.+++---.+|.+.|= -.|..++..+++.|++
T Consensus 435 ~~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~TH---q~iedla~lR~iPn~~v~~PaD~~E~~~~~~~al~-- 508 (663)
T PRK12753 435 LMFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTH---QPVEQLASLRLTPNFSTWRPCDQVEAAVAWKLAIE-- 508 (663)
T ss_pred HHHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCccc---ccHHHHHHHhcCCCCEEEccCCHHHHHHHHHHHHh--
Confidence 36655 5689999999999999999888876664321111 123333333345555442 3466677776666653
Q ss_pred HccCCCEEEEE
Q 013928 313 RRGEGPTLVEC 323 (434)
Q Consensus 313 r~~~gP~lIev 323 (434)
..++|+.|-+
T Consensus 509 -~~~gP~~irl 518 (663)
T PRK12753 509 -RHNGPTALIL 518 (663)
T ss_pred -cCCCCEEEEe
Confidence 2468988866
No 236
>PRK05899 transketolase; Reviewed
Probab=59.73 E-value=48 Score=36.78 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=49.6
Q ss_pred ccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHH
Q 013928 235 TCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIER 311 (434)
Q Consensus 235 a~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ 311 (434)
.|. .-.++.+.+++..++|++++....+++.+ .+++ | .+.+++---.+|.++| .-.|..++...++.+++
T Consensus 401 ~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH-q----~~edia~~r~iP~~~V~~P~d~~e~~~~l~~a~~- 473 (624)
T PRK05899 401 VFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH-Q----PVEQLASLRAIPNLTVIRPADANETAAAWKYALE- 473 (624)
T ss_pred HHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc-c----cHHHHHHHHhCCCcEEEeCCCHHHHHHHHHHHHH-
Confidence 444 34578888889999999999987775443 2332 2 1333222224555543 34577777776666653
Q ss_pred HHccCCCEEEEE
Q 013928 312 ARRGEGPTLVEC 323 (434)
Q Consensus 312 ar~~~gP~lIev 323 (434)
..++|++|-.
T Consensus 474 --~~~~P~~ir~ 483 (624)
T PRK05899 474 --RKDGPSALVL 483 (624)
T ss_pred --cCCCCEEEEE
Confidence 2268998877
No 237
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=59.06 E-value=60 Score=36.69 Aligned_cols=90 Identities=8% Similarity=-0.064 Sum_probs=52.6
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccC-cccccccccCchhhhccccCCCcEEEEe-CCCHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSHLRATSDPQIYKKGPAFGMPGFHVD-GMDVLKV 301 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~i-s~~~~~~~~~~d~~~~a~a~Gi~~~~Vd-G~D~~av 301 (434)
-++++++. ..|.+=.+-+-.+-++..++||+|++..-++.. ..+++. ...|++- --.+|.++|= -.|..++
T Consensus 447 ~kPvv~iy--stFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~--g~~Dia~---lr~IPnm~V~aPsD~~El 519 (701)
T PLN02225 447 LKPFCIIP--SAFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQC--GAFDIAF---MSSLPNMIAMAPADEDEL 519 (701)
T ss_pred CEEEEEee--hhHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCcccc--ccHHHHH---HhcCCCCEEEeeCCHHHH
Confidence 45677777 467664445555668999999999987654321 111111 1233322 2245655543 3477787
Q ss_pred HHHHHHHHHHHHccCCCEEEEE
Q 013928 302 REVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 302 ~~a~~~Al~~ar~~~gP~lIev 323 (434)
...++.|+. ..++|+.|-.
T Consensus 520 ~~mL~~A~~---~~~gPv~IR~ 538 (701)
T PLN02225 520 VNMVATAAY---VTDRPVCFRF 538 (701)
T ss_pred HHHHHHHHh---cCCCCEEEEe
Confidence 776666542 3468999865
No 238
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=56.75 E-value=68 Score=33.08 Aligned_cols=99 Identities=24% Similarity=0.201 Sum_probs=50.4
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEEE-eCccccccchHHHHHHHHHH--------cCCCeEEEEEcCCccCcccc
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAF-FGDGTCNNGQFFECLNMAAL--------WKLPIVFVVENNLWAIGMSH 270 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~-~GDGa~~~G~~~EaLn~A~~--------~~LPvI~VV~NN~y~is~~~ 270 (434)
.+++|.|+|++ + -++++++ +.| |.+-.+-+-.+-++. +++|+|++.....++...++
T Consensus 94 ~vg~AaGlA~~-----------G-~~Pvv~~~fa~--Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~t 159 (355)
T PTZ00182 94 FAGFAIGAAMN-----------G-LRPIAEFMFAD--FIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAY 159 (355)
T ss_pred HHHHHHHHHhC-----------C-CEEEEEechhh--HHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCc
Confidence 35567777775 2 2333333 343 433333334444554 35677766544444444443
Q ss_pred cccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEE
Q 013928 271 LRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVE 322 (434)
Q Consensus 271 ~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIe 322 (434)
+.+ .+....+ .+|.++| .-.|+.++..+++.+++ .++|++|-
T Consensus 160 Hs~----~~ea~lr--~iPn~~V~~Psd~~e~~~~l~~a~~----~~~P~~i~ 202 (355)
T PTZ00182 160 HSQ----SFEAYFA--HVPGLKVVAPSDPEDAKGLLKAAIR----DPNPVVFF 202 (355)
T ss_pred ccc----hHHHHHh--cCCCCEEEeeCCHHHHHHHHHHHHh----CCCcEEEE
Confidence 322 1223333 4454443 23467777777776653 47899774
No 239
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=54.44 E-value=70 Score=28.69 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=53.3
Q ss_pred chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcC-CCeEEEEEc-CCccCcccccccccCch
Q 013928 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWK-LPIVFVVEN-NLWAIGMSHLRATSDPQ 278 (434)
Q Consensus 201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~-LPvI~VV~N-N~y~is~~~~~~~~~~d 278 (434)
+.+|.|+|+. +. +++++++.. |.. ...+.+.+...++ .|+|+.... ..++...+++. +..+
T Consensus 62 vg~a~GlA~~-----------G~-~pi~~~~~~--f~~-~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~--~~~~ 124 (168)
T smart00861 62 VGFAAGLALA-----------GL-RPVVAIFFT--FFD-RAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHH--SQED 124 (168)
T ss_pred HHHHHHHHHc-----------CC-CcEEEeeHH--HHH-HHHHHHHHhCcccCCCEEEEecCccccCCCCcccc--chhH
Confidence 4556666665 33 455555533 222 2477888888887 555555543 33333222221 1122
Q ss_pred hhhccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 279 IYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 279 ~~~~a~a~Gi~~~~-VdG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
+. +. -++|.+. +.-.|+.++...++.+++ ..++|+.|-.
T Consensus 125 ~~-~~--~~iP~~~v~~P~~~~e~~~~l~~a~~---~~~~p~~i~~ 164 (168)
T smart00861 125 EA-LL--RAIPGLKVVAPSDPAEAKGLLRAAIR---RDDGPPVIRL 164 (168)
T ss_pred HH-HH--hcCCCcEEEecCCHHHHHHHHHHHHh---CCCCCEEEEe
Confidence 22 22 2455443 345678888887777762 3467977654
No 240
>PRK11032 hypothetical protein; Provisional
Probab=53.28 E-value=49 Score=30.39 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 013928 354 ITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAP 395 (434)
Q Consensus 354 l~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~ 395 (434)
|...++++.+.|-+|++|++.+.+-++..+++..+....+..
T Consensus 30 ve~a~~~~~~~~elT~dEl~lv~~ylkRDL~ef~~~~~~~~~ 71 (160)
T PRK11032 30 VESARKRVDAAGELTRDEVDLITRAVRRDLEEFARSYEESKE 71 (160)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 778899999999999999999999999999998776555433
No 241
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=50.73 E-value=44 Score=36.36 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=26.5
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEc
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVEN 261 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~N 261 (434)
.++++..|=|.++. .-++..|..-+.|||+|.-.
T Consensus 74 ~v~~vt~GpG~~N~---l~~i~~A~~~~~Pvl~IsG~ 107 (568)
T PRK07449 74 VAVIVTSGTAVANL---YPAVIEAGLTGVPLIVLTAD 107 (568)
T ss_pred EEEEECCccHHHhh---hHHHHHHhhcCCcEEEEECC
Confidence 45666678888874 55888999999999999643
No 242
>PRK12754 transketolase; Reviewed
Probab=50.36 E-value=93 Score=34.95 Aligned_cols=82 Identities=20% Similarity=0.166 Sum_probs=51.9
Q ss_pred ccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHH
Q 013928 235 TCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERAR 313 (434)
Q Consensus 235 a~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar 313 (434)
.|.. ...+.+.+++..++||++|....+++++..-..- ..+.+++---.+|...| .-.|..++..+++.+++
T Consensus 436 ~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~TH---q~iEdla~lR~iPn~~V~~PaD~~E~~~~~~~a~~--- 508 (663)
T PRK12754 436 MFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTH---QPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVE--- 508 (663)
T ss_pred HHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCc---ccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHh---
Confidence 5554 5789999999999999999988876664321111 12334433334565544 33476777776666653
Q ss_pred ccCCCEEEEE
Q 013928 314 RGEGPTLVEC 323 (434)
Q Consensus 314 ~~~gP~lIev 323 (434)
..++|+.|-+
T Consensus 509 ~~~gP~yirl 518 (663)
T PRK12754 509 RQDGPTALIL 518 (663)
T ss_pred CCCCCEEEEe
Confidence 2368987755
No 243
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=47.72 E-value=70 Score=32.09 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=38.8
Q ss_pred CCceEEEEeCccccccchHHHHHHHHHHcC-CC--eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeC
Q 013928 223 CDHVTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 295 (434)
Q Consensus 223 ~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~-LP--vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG 295 (434)
+.+++|.+.|.|+. .++|-.+...+ +| |+.|+-||. +..++|+.+|+|++.++-
T Consensus 93 ~~kiavl~Sg~g~n-----l~al~~~~~~~~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~ 149 (289)
T PRK13010 93 RPKVVIMVSKFDHC-----LNDLLYRWRMGELDMDIVGIISNHP--------------DLQPLAVQHDIPFHHLPV 149 (289)
T ss_pred CeEEEEEEeCCCcc-----HHHHHHHHHCCCCCcEEEEEEECCh--------------hHHHHHHHcCCCEEEeCC
Confidence 45678888888765 55677766543 45 888888875 334778899999998753
No 244
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=47.57 E-value=70 Score=35.61 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=48.8
Q ss_pred HHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEE
Q 013928 241 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTL 320 (434)
Q Consensus 241 ~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~l 320 (434)
..-++.+|+..++|+++|..-+.++++-.--...+...++.+=.--|+.++|= .|..+...+.+.|++ +.++|+.
T Consensus 441 ~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RP--aD~~Et~~aw~~Al~---~~~gPt~ 515 (663)
T COG0021 441 ARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRP--ADANETAAAWKYALE---RKDGPTA 515 (663)
T ss_pred hhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEec--CChHHHHHHHHHHHh---cCCCCeE
Confidence 46689999999999999999988777643211122233333322235555542 233466666666664 2579998
Q ss_pred EEE
Q 013928 321 VEC 323 (434)
Q Consensus 321 Iev 323 (434)
|-.
T Consensus 516 Lil 518 (663)
T COG0021 516 LIL 518 (663)
T ss_pred EEE
Confidence 866
No 245
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=47.23 E-value=84 Score=31.94 Aligned_cols=63 Identities=24% Similarity=0.207 Sum_probs=34.6
Q ss_pred CCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEEE
Q 013928 252 KLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVECE 324 (434)
Q Consensus 252 ~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev~ 324 (434)
++|+++...+-.++...+++.+. +....+ .+|+++| .-.|+.++...++.|+ ..++|++|-..
T Consensus 110 ~v~vv~~~~~g~~~~~G~tH~~~----~ea~~r--~iP~l~V~~P~d~~e~~~~l~~a~----~~~~Pv~i~~~ 173 (327)
T PRK09212 110 KCPIVFRGPNGAAARVAAQHSQC----YAAWYS--HIPGLKVVAPYFAADCKGLLKTAI----RDPNPVIFLEN 173 (327)
T ss_pred CccEEEEeCCCCCCCCCcccccC----HHHHHh--cCCCCEEEeeCCHHHHHHHHHHHH----hCCCcEEEEEc
Confidence 57777776554433333332221 223333 4565544 3357778877777665 34789998543
No 246
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=45.10 E-value=1.5e+02 Score=29.41 Aligned_cols=101 Identities=18% Similarity=0.133 Sum_probs=55.7
Q ss_pred cccchhhHHHHHHHHHHHhhhhhcCC-CceEEEEeCccccc----cchHHHHHHHHHHcCCC-eEEEEEcCCccCccccc
Q 013928 198 GEGIPVATGAAFTSKYRREVLKEADC-DHVTLAFFGDGTCN----NGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHL 271 (434)
Q Consensus 198 G~glp~AvGaA~A~k~~~~~~~~~~~-d~~vv~~~GDGa~~----~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~ 271 (434)
|...|.+-|..+|...... .+..+| ...+++++-||=.+ .+...|++..|.....- +.++|.|-.-..
T Consensus 151 GG~TPL~~aL~~a~ev~~r-~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~----- 224 (261)
T COG1240 151 GGKTPLADALRQAYEVLAR-EKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSE----- 224 (261)
T ss_pred CCCCchHHHHHHHHHHHHH-hhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCcc-----
Confidence 4445555555555333321 111233 45688899999764 44457777777654433 333333322011
Q ss_pred ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHH
Q 013928 272 RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAK 306 (434)
Q Consensus 272 ~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~ 306 (434)
....-..+++..+|.++++.+...-..+..+++
T Consensus 225 --~~~g~~~~iA~~~Gg~~~~L~~l~~~~i~~~~r 257 (261)
T COG1240 225 --VRLGLAEEIARASGGEYYHLDDLSDDSIVSAVR 257 (261)
T ss_pred --ccccHHHHHHHHhCCeEEecccccchHHHHHHH
Confidence 111124567888999999999876666655443
No 247
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=45.01 E-value=96 Score=29.54 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=35.5
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcC-CC--eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCC
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 296 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~-LP--vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~ 296 (434)
++|.+.|-|+. .++|--+...+ ++ +++||-||..+ ...++|+.+|+|++..+..
T Consensus 2 i~vl~Sg~Gsn-----~~al~~~~~~~~l~~~i~~visn~~~~------------~~~~~A~~~gIp~~~~~~~ 58 (207)
T PLN02331 2 LAVFVSGGGSN-----FRAIHDACLDGRVNGDVVVVVTNKPGC------------GGAEYARENGIPVLVYPKT 58 (207)
T ss_pred EEEEEeCCChh-----HHHHHHHHHcCCCCeEEEEEEEeCCCC------------hHHHHHHHhCCCEEEeccc
Confidence 67788888875 44565555433 55 78888888611 2345677889999876543
No 248
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=44.02 E-value=76 Score=27.42 Aligned_cols=72 Identities=18% Similarity=0.137 Sum_probs=42.6
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
.+..++++.||.-+ +...+.+..+...+.++.+|....... ....+..+++.-|..++.++. +..++.+
T Consensus 99 ~~~~iv~iTDG~~~-~~~~~~~~~~~~~~i~i~~v~~~~~~~---------~~~~l~~la~~tgG~~~~~~~-~~~~l~~ 167 (172)
T PF13519_consen 99 RRRAIVLITDGEDN-SSDIEAAKALKQQGITIYTVGIGSDSD---------ANEFLQRLAEATGGRYFHVDN-DPEDLDD 167 (172)
T ss_dssp EEEEEEEEES-TTH-CHHHHHHHHHHCTTEEEEEEEES-TT----------EHHHHHHHHHHTEEEEEEE-S-SSHHHHH
T ss_pred CceEEEEecCCCCC-cchhHHHHHHHHcCCeEEEEEECCCcc---------HHHHHHHHHHhcCCEEEEecC-CHHHHHH
Confidence 56789999999766 334667777776776655554433211 013466677777888888842 2345555
Q ss_pred HHH
Q 013928 304 VAK 306 (434)
Q Consensus 304 a~~ 306 (434)
+++
T Consensus 168 ~~~ 170 (172)
T PF13519_consen 168 AFQ 170 (172)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 249
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=43.00 E-value=36 Score=22.31 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 013928 352 DPITALKKYLIESSLASEAELKAIEKKID 380 (434)
Q Consensus 352 DPl~~~~~~L~~~G~~te~e~~~i~~e~~ 380 (434)
+++..++. |.+.|++|++|.++.++++.
T Consensus 3 ~~L~~L~~-l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 3 DRLEKLKE-LYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHH-HHHcCCCCHHHHHHHHHHHh
Confidence 34555544 46889999999999888763
No 250
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=42.98 E-value=2.3e+02 Score=25.53 Aligned_cols=70 Identities=9% Similarity=0.055 Sum_probs=42.5
Q ss_pred ceEEEEeCccccccch--H----HHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCH
Q 013928 225 HVTLAFFGDGTCNNGQ--F----FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDV 298 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~--~----~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~ 298 (434)
+.+++++.||.-+.|. . .+....+...+.+++.|-.. ... ....-+.++++.-|-.++.++..+-
T Consensus 99 ~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~------~~~---~~~~~l~~iA~~tgG~~~~~~d~~~ 169 (178)
T cd01451 99 RPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTE------GRP---VRRGLAKDLARALGGQYVRLPDLSA 169 (178)
T ss_pred ceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCC------CCc---cCccHHHHHHHHcCCeEEEcCcCCH
Confidence 4789999999876542 1 33344556677776554211 100 0112366778888999999987775
Q ss_pred HHHHH
Q 013928 299 LKVRE 303 (434)
Q Consensus 299 ~av~~ 303 (434)
.++..
T Consensus 170 ~~~~~ 174 (178)
T cd01451 170 DAIAS 174 (178)
T ss_pred HHHHH
Confidence 55544
No 251
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=41.65 E-value=1.1e+02 Score=30.61 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=37.6
Q ss_pred CCceEEEEeCccccccchHHHHHHHHHHcC-CC--eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeC
Q 013928 223 CDHVTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 295 (434)
Q Consensus 223 ~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~-LP--vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG 295 (434)
+.+++|...|-|+. .++|--+...+ +| |+.|+-||. ++..+|+.+|+|++.++.
T Consensus 84 ~~ki~vl~Sg~g~n-----l~~l~~~~~~g~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 84 LKRVAILVSKEDHC-----LGDLLWRWYSGELDAEIALVISNHE--------------DLRSLVERFGIPFHYIPA 140 (280)
T ss_pred CcEEEEEEcCCChh-----HHHHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEcCC
Confidence 45678888888765 45666665443 44 888888874 233458889999998875
No 252
>PRK13683 hypothetical protein; Provisional
Probab=40.15 E-value=44 Score=27.46 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=30.2
Q ss_pred cCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 013928 285 AFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330 (434)
Q Consensus 285 a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~g 330 (434)
.+-+.+-|=+-.|.+++|..++.|+ +.+.|.+||+.|.+..+
T Consensus 12 P~P~SVQRKe~edA~alYq~I~~am----~sg~P~llELtCek~~~ 53 (87)
T PRK13683 12 PMPISVQRKEAEDAEALYQQIRQAM----RSGNPRLLELTCEKVED 53 (87)
T ss_pred CcceEEEeccHHHHHHHHHHHHHHH----hcCCCcEEEEEecCcCC
Confidence 3444445556678888888888777 34689999999987554
No 253
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=39.55 E-value=1.9e+02 Score=29.50 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=20.8
Q ss_pred CCcEEEEe-CCCHHHHHHHHHHHHHHHHccCCCEEEE
Q 013928 287 GMPGFHVD-GMDVLKVREVAKEAIERARRGEGPTLVE 322 (434)
Q Consensus 287 Gi~~~~Vd-G~D~~av~~a~~~Al~~ar~~~gP~lIe 322 (434)
.+|+++|= -.|+.+....++.|+ +.++|++|-
T Consensus 139 ~iPgl~V~~Psd~~d~~~~l~~a~----~~~~Pv~ir 171 (327)
T CHL00144 139 SVPGLQIVACSTPYNAKGLLKSAI----RSNNPVIFF 171 (327)
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHH----hCCCcEEEE
Confidence 45665443 347778777776665 357899885
No 254
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=37.71 E-value=89 Score=26.66 Aligned_cols=76 Identities=25% Similarity=0.227 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEE--EeCCCH-HHHHHHHHHHHHHHHccCCC
Q 013928 242 FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFH--VDGMDV-LKVREVAKEAIERARRGEGP 318 (434)
Q Consensus 242 ~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~--VdG~D~-~av~~a~~~Al~~ar~~~gP 318 (434)
.+.+...+..+.-.|+ ||. --+- ...+....++.+.+++.|+.+++ |.+.++ .+-..++.++++ ...+|
T Consensus 17 ~~d~~~la~~GfktVI---nlR-pd~E-~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~---~~~~P 88 (110)
T PF04273_consen 17 PEDLAQLAAQGFKTVI---NLR-PDGE-EPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALE---SLPKP 88 (110)
T ss_dssp HHHHHHHHHCT--EEE---E-S--TTS-TTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHH---TTTTS
T ss_pred HHHHHHHHHCCCcEEE---ECC-CCCC-CCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH---hCCCC
Confidence 5566666666666432 333 1100 01122233566788899998875 444332 222333444443 45789
Q ss_pred EEEEEEE
Q 013928 319 TLVECET 325 (434)
Q Consensus 319 ~lIev~t 325 (434)
++++|.+
T Consensus 89 vl~hC~s 95 (110)
T PF04273_consen 89 VLAHCRS 95 (110)
T ss_dssp EEEE-SC
T ss_pred EEEECCC
Confidence 9999954
No 255
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.21 E-value=1.3e+02 Score=27.82 Aligned_cols=49 Identities=29% Similarity=0.417 Sum_probs=36.6
Q ss_pred ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928 274 TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 274 ~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t 325 (434)
+-+...+--|++||..++-++|.+-+.+.+.++..++ +-+||..|+..+
T Consensus 18 RiTTHV~LtARAfGA~gil~~~e~De~v~esv~dVv~---rwGG~F~v~~~~ 66 (179)
T COG1303 18 RITTHVALTARAFGADGILLDGEEDEKVVESVEDVVE---RWGGPFFVKFGV 66 (179)
T ss_pred cchhhhhhhhHhhCCceEEEcCcccHHHHHHHHHHHH---hcCCCEEEEEcc
Confidence 3345667778999999999999865677777766654 468998887743
No 256
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=37.00 E-value=1.3e+02 Score=28.34 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=34.5
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCC--eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCC
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 296 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP--vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~ 296 (434)
+++|.+.|+|+..+. ++++ ...-+++ |++||-|+. . ....++++..|+|++.++-.
T Consensus 3 ki~vl~sg~gs~~~~-ll~~---~~~~~~~~~I~~vvs~~~-~-----------~~~~~~a~~~gIp~~~~~~~ 60 (200)
T PRK05647 3 RIVVLASGNGSNLQA-IIDA---CAAGQLPAEIVAVISDRP-D-----------AYGLERAEAAGIPTFVLDHK 60 (200)
T ss_pred eEEEEEcCCChhHHH-HHHH---HHcCCCCcEEEEEEecCc-c-----------chHHHHHHHcCCCEEEECcc
Confidence 478999999987553 2222 2233344 666666654 1 12456778899999987643
No 257
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=36.91 E-value=1.3e+02 Score=22.91 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 013928 355 TALKKYLIESSLASEAELKAIEKKIDEVVEDA 386 (434)
Q Consensus 355 ~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a 386 (434)
+.+-+..++.|.+|.++-+.|.+.+++..+..
T Consensus 21 K~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~ 52 (59)
T PF10925_consen 21 KQIIDKYVEAGVITQEQADAIKKHIDQRQEYM 52 (59)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 34556668899999999999999998887554
No 258
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=36.91 E-value=1.7e+02 Score=27.86 Aligned_cols=84 Identities=24% Similarity=0.324 Sum_probs=49.9
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcC-CC--eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 301 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~-LP--vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av 301 (434)
+++|.+.|-|+- .|++--|..-+ +| |..|+-||. +-.-.++|+.+|++...++-.+.. -
T Consensus 2 ki~VlaSG~GSN-----lqaiida~~~~~~~a~i~~Visd~~------------~A~~lerA~~~gIpt~~~~~k~~~-~ 63 (200)
T COG0299 2 KIAVLASGNGSN-----LQAIIDAIKGGKLDAEIVAVISDKA------------DAYALERAAKAGIPTVVLDRKEFP-S 63 (200)
T ss_pred eEEEEEeCCccc-----HHHHHHHHhcCCCCcEEEEEEeCCC------------CCHHHHHHHHcCCCEEEeccccCC-C
Confidence 468888888876 44666666533 34 777777774 113456788899999877644321 1
Q ss_pred HHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 302 REVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 302 ~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
.+++..++.......+|=+|-+--|
T Consensus 64 r~~~d~~l~~~l~~~~~dlvvLAGy 88 (200)
T COG0299 64 REAFDRALVEALDEYGPDLVVLAGY 88 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcch
Confidence 2333334444444556766666433
No 259
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=36.77 E-value=5e+02 Score=30.56 Aligned_cols=108 Identities=10% Similarity=0.043 Sum_probs=57.6
Q ss_pred chhhHHHHHHHHHHHhhhhhcCCCc--eEEEEeCccccc-cchHHHHHHHH-HHcCC--CeEEEEEcCCccCcccccccc
Q 013928 201 IPVATGAAFTSKYRREVLKEADCDH--VTLAFFGDGTCN-NGQFFECLNMA-ALWKL--PIVFVVENNLWAIGMSHLRAT 274 (434)
Q Consensus 201 lp~AvGaA~A~k~~~~~~~~~~~d~--~vv~~~GDGa~~-~G~~~EaLn~A-~~~~L--PvI~VV~NN~y~is~~~~~~~ 274 (434)
++.++|+|+. +++. ++=+-+||=+.. |-.+-+-++.+ ..|+. ++|+.+- .+|....+.+.+.
T Consensus 658 ~G~~~G~a~~-----------g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~sglv~~~p-~G~~g~g~~hsS~ 725 (924)
T PRK09404 658 LGFEYGYSTA-----------EPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVMLLP-HGYEGQGPEHSSA 725 (924)
T ss_pred HHHHHHHHhc-----------CCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCccCeEEEec-CcCCCCChhhhcc
Confidence 4558888887 6664 444666774431 23356677775 67765 4554443 3455544433332
Q ss_pred cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEE
Q 013928 275 SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECE 324 (434)
Q Consensus 275 ~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~ 324 (434)
+...+.+.+.--|+.++... .+.+.+..++.++ .|..+.|+++--.
T Consensus 726 ~~E~~l~~~~~~gl~Vv~ps--tpad~~~lLr~q~--~r~~r~Pvv~~~p 771 (924)
T PRK09404 726 RLERFLQLCAEDNMQVCNPT--TPAQYFHLLRRQA--LRPFRKPLVVMTP 771 (924)
T ss_pred CHHHHHHhCCCCCCEEEecC--CHHHHHHHHHHHH--hhCCCCCEEEecc
Confidence 22223332222266666554 4566666565543 1455689887553
No 260
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=36.10 E-value=76 Score=36.40 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=57.4
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEE-EEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFV-VENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~V-V~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~ 302 (434)
+++.||+.|+... +..+-.+-.+|..++.|...| |++-. ....+......-.....+++.+|....++.|.|+..
T Consensus 249 e~ilvcI~~~~~~-e~liR~a~RlA~~~~a~~~av~v~~~~-~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~dv~~-- 324 (890)
T COG2205 249 ERILVCISGSPGS-EKLIRRAARLASRLHAKWTAVYVETPE-LHRLSEKEARRLHENLRLAEELGAEIVTLYGGDVAK-- 324 (890)
T ss_pred ceEEEEECCCCch-HHHHHHHHHHHHHhCCCeEEEEEeccc-cccccHHHHHHHHHHHHHHHHhCCeEEEEeCCcHHH--
Confidence 6778888877654 445788899999999995444 33322 222211112222345678899999999999987543
Q ss_pred HHHHHHHHHHHccCCCEEEEEEE
Q 013928 303 EVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 303 ~a~~~Al~~ar~~~gP~lIev~t 325 (434)
..+++++..+---+|--..
T Consensus 325 ----~i~~ya~~~~~TkiViG~~ 343 (890)
T COG2205 325 ----AIARYAREHNATKIVIGRS 343 (890)
T ss_pred ----HHHHHHHHcCCeeEEeCCC
Confidence 2445666555444444333
No 261
>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA [].
Probab=35.91 E-value=74 Score=25.85 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=31.5
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcchhhhcc
Q 013928 359 KYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENV 405 (434)
Q Consensus 359 ~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~~~l~~~v 405 (434)
..|...|++|.+|+.+|.+.-... +.......+.+++.+.++
T Consensus 9 e~l~~~~lFt~~EI~~IvkkR~~f-----Ey~L~rr~~~~~Dfl~YI 50 (83)
T PF08640_consen 9 EDLERKGLFTKEEIREIVKKRRDF-----EYKLQRRGKKKSDFLRYI 50 (83)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHH-----HHHHHcCCCCHHHHHHHH
Confidence 345788999999999998887766 666666677776666554
No 262
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=35.27 E-value=2.1e+02 Score=31.98 Aligned_cols=164 Identities=18% Similarity=0.177 Sum_probs=86.6
Q ss_pred CCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccc
Q 013928 122 YNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGI 201 (434)
Q Consensus 122 ~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~gl 201 (434)
..|+||+.-+ +|..+=-+++.||| -|..+++..+.....-. +.+++ .+..| - --.+
T Consensus 16 llGneAi~r~---Ale~gV~~~aGYpG--------tPstei~e~la~~~~~l-----~~vy~-e~s~N-----E--kvA~ 71 (640)
T COG4231 16 LLGNEAIARG---ALEAGVGVAAGYPG--------TPSTELIETLAKAKKIL-----GDVYF-EWSLN-----E--KVAL 71 (640)
T ss_pred hccHHHHHHH---HHhcCceEEeccCC--------CCcHHHHHHHHHhhhhc-----CcEEE-Eeccc-----H--HHHH
Confidence 4899998654 34455567888885 56666666655533211 01111 00001 0 1123
Q ss_pred hhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCC--eEEEEEcCCccCcccccccccCchh
Q 013928 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP--IVFVVENNLWAIGMSHLRATSDPQI 279 (434)
Q Consensus 202 p~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP--vI~VV~NN~y~is~~~~~~~~~~d~ 279 (434)
-.|.|++++ ....++.+=-=+++ ...-.|..++.-+.. +|+|+-++- +...++..|. -
T Consensus 72 e~a~GA~~~-------------G~ral~~mKhVGlN--vAsDpl~s~ay~Gv~GGlviv~aDDp-g~~SSqneqd----s 131 (640)
T COG4231 72 ETAAGASYA-------------GVRALVTMKHVGLN--VASDPLMSLAYAGVTGGLVIVVADDP-GMHSSQNEQD----S 131 (640)
T ss_pred HHHHHhhhc-------------CceeeEEecccccc--cchhhhhhhhhcCccccEEEEEccCC-CcccccchhH----h
Confidence 456666655 22222222111121 112233444444444 666665554 4433333332 1
Q ss_pred hhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCC
Q 013928 280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH 331 (434)
Q Consensus 280 ~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gH 331 (434)
.-.++...+|++ +-.|+.++++.++.|++.-+..+-|+++-+.|.-.+.|
T Consensus 132 r~y~~~a~iPvL--eP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~ 181 (640)
T COG4231 132 RAYGKFALIPVL--EPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSR 181 (640)
T ss_pred HHHHHhcCceee--cCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccc
Confidence 222333456655 44589999999999999999999999999887543333
No 263
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.50 E-value=51 Score=29.00 Aligned_cols=45 Identities=31% Similarity=0.464 Sum_probs=26.4
Q ss_pred chhhhccccCCCcEEE--EeCC--CHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928 277 PQIYKKGPAFGMPGFH--VDGM--DVLKVREVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 277 ~d~~~~a~a~Gi~~~~--VdG~--D~~av~~a~~~Al~~ar~~~gP~lIev~t 325 (434)
..+...++..|+.+.+ |-+. ...+| ++++.|++ +.+||+|-.|++
T Consensus 48 ~~i~~aa~~aGl~y~~iPV~~~~iT~~dV-~~f~~Al~---eaegPVlayCrs 96 (130)
T COG3453 48 AAIAAAAEAAGLTYTHIPVTGGGITEADV-EAFQRALD---EAEGPVLAYCRS 96 (130)
T ss_pred HHHHHHHHhcCCceEEeecCCCCCCHHHH-HHHHHHHH---HhCCCEEeeecC
Confidence 3455667777877654 3332 22233 34555554 347999999953
No 264
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=33.37 E-value=1.6e+02 Score=29.38 Aligned_cols=55 Identities=24% Similarity=0.285 Sum_probs=37.2
Q ss_pred CCCceEEEEeCccccccchHHHHHHHHHHc-CCC--eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeC
Q 013928 222 DCDHVTLAFFGDGTCNNGQFFECLNMAALW-KLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 295 (434)
Q Consensus 222 ~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~-~LP--vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG 295 (434)
.+.+++|+..|.|+. .|+|--+... .++ |+.|+-|+. +...+|+.+|+|++.++-
T Consensus 88 ~~~ri~vl~Sg~gsn-----l~al~~~~~~~~~~~~i~~visn~~--------------~~~~lA~~~gIp~~~~~~ 145 (286)
T PRK06027 88 ERKRVVILVSKEDHC-----LGDLLWRWRSGELPVEIAAVISNHD--------------DLRSLVERFGIPFHHVPV 145 (286)
T ss_pred cCcEEEEEEcCCCCC-----HHHHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEecc
Confidence 455778888888655 5567655443 344 788887774 344558889999998753
No 265
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=32.98 E-value=58 Score=35.86 Aligned_cols=53 Identities=25% Similarity=0.181 Sum_probs=35.8
Q ss_pred HHHHHHHHHHc--CCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928 241 FFECLNMAALW--KLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302 (434)
Q Consensus 241 ~~EaLn~A~~~--~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~ 302 (434)
...+|.-+.++ ++|++++|+|.. +.+ ...-.+.++.||++.+.||.+.+.+..
T Consensus 404 l~~aLED~~RhGqKlPL~VlvDnGs------TeE---DipA~~~~k~Ygi~ivVVDHH~Pde~v 458 (715)
T COG1107 404 LNFALEDAHRHGQKLPLLVLVDNGS------TEE---DIPAIKQLKAYGIDIVVVDHHYPDEAV 458 (715)
T ss_pred HHHHHHHHHhcCCccceEEEEcCCC------ccc---ccHHHHHHHhcCCCEEEEcCCCCcchh
Confidence 34466666665 588888887764 111 123456788999999999998776543
No 266
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=32.11 E-value=1.3e+02 Score=30.07 Aligned_cols=66 Identities=23% Similarity=0.369 Sum_probs=41.1
Q ss_pred CcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccc--cccchHHHHHHHHH---------HcCCCeEEEEEc
Q 013928 193 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT--CNNGQFFECLNMAA---------LWKLPIVFVVEN 261 (434)
Q Consensus 193 ~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa--~~~G~~~EaLn~A~---------~~~LPvI~VV~N 261 (434)
.+..||.+++.++|.++........ ..+.+.|||.--|+ +++|. ..-|.+|. ..+||.|.|+.|
T Consensus 130 df~FmgGSmGsVvGeki~ra~E~A~----e~k~P~v~f~aSGGARMQEg~-lSLMQMaktsaAl~~l~ea~lpyIsVLt~ 204 (294)
T COG0777 130 DFAFMGGSMGSVVGEKITRAIERAI----EDKLPLVLFSASGGARMQEGI-LSLMQMAKTSAALKRLSEAGLPYISVLTD 204 (294)
T ss_pred eccccccchhHHHHHHHHHHHHHHH----HhCCCEEEEecCcchhHhHHH-HHHHHHHHHHHHHHHHHhcCCceEEEecC
Confidence 4566777788888888875554321 12345667766666 46664 33444433 568999888876
Q ss_pred CC
Q 013928 262 NL 263 (434)
Q Consensus 262 N~ 263 (434)
=-
T Consensus 205 PT 206 (294)
T COG0777 205 PT 206 (294)
T ss_pred CC
Confidence 53
No 267
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=32.05 E-value=1.9e+02 Score=27.45 Aligned_cols=40 Identities=23% Similarity=0.175 Sum_probs=27.5
Q ss_pred HHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCC
Q 013928 245 LNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 296 (434)
Q Consensus 245 Ln~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~ 296 (434)
...|...++|+++++-++. ++.-....+.+|..++.+++.
T Consensus 66 A~~a~~~g~~~~v~~p~~~------------~~~~~~~~~~~Ga~v~~~~~~ 105 (244)
T cd00640 66 AAAAARLGLKCTIVMPEGA------------SPEKVAQMRALGAEVVLVPGD 105 (244)
T ss_pred HHHHHHcCCCEEEEECCCC------------CHHHHHHHHHCCCEEEEECCC
Confidence 3355678999888877653 122334567789999999876
No 268
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=31.61 E-value=3e+02 Score=30.50 Aligned_cols=98 Identities=20% Similarity=0.248 Sum_probs=59.2
Q ss_pred cccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccch---------HHHHHHHHH---HcCCCeEEEEEcCCcc
Q 013928 198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQ---------FFECLNMAA---LWKLPIVFVVENNLWA 265 (434)
Q Consensus 198 G~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~---------~~EaLn~A~---~~~LPvI~VV~NN~y~ 265 (434)
|.+.|.+-|...|.+...... . .....+++++-||-.+.+. ..+++..|. ..++++++|-.-+.
T Consensus 473 gGgTpL~~gL~~A~~~l~~~~-~-~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vId~g~~-- 548 (584)
T PRK13406 473 GGGTPLAAGLDAAAALALQVR-R-KGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPALVIDTSPR-- 548 (584)
T ss_pred CCCChHHHHHHHHHHHHHHhc-c-CCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEEEEecCCC--
Confidence 566777777777765432110 0 1235788999999887542 134444443 44556554422111
Q ss_pred CcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHH
Q 013928 266 IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEA 308 (434)
Q Consensus 266 is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~A 308 (434)
......++|+..|..++.+..-+...+..+++.+
T Consensus 549 ---------~~~~~~~LA~~~gg~y~~l~~~~a~~~~~~v~~~ 582 (584)
T PRK13406 549 ---------PQPQARALAEAMGARYLPLPRADAGRLSQAVRAA 582 (584)
T ss_pred ---------CcHHHHHHHHhcCCeEEECCCCCHHHHHHHHHhh
Confidence 1224667888999999999888877777665543
No 269
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=31.51 E-value=2.2e+02 Score=28.94 Aligned_cols=108 Identities=15% Similarity=0.157 Sum_probs=63.2
Q ss_pred ccccc-cchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHH-HHHcCCCeEEEEEcCCccCcccccc
Q 013928 195 AFIGE-GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNM-AALWKLPIVFVVENNLWAIGMSHLR 272 (434)
Q Consensus 195 g~lG~-glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~-A~~~~LPvI~VV~NN~y~is~~~~~ 272 (434)
|+..+ .++.|.|.|++ + ..+. .++=+.|.++-.||=+.. .+..+|||-+|+.+-++..+..-.
T Consensus 55 GIaEQ~mvg~AAGLA~~-----------G-k~Pf--v~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~- 119 (312)
T COG3958 55 GIAEQDMVGTAAGLALA-----------G-KKPF--VSTFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGS- 119 (312)
T ss_pred chHHHHHHHHHHHHHhc-----------C-CCce--eechHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCc-
Confidence 34433 45667777776 1 2233 344567877666666654 467889999999998865542211
Q ss_pred cccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 273 ATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 273 ~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
+-.-+.+++---|+|-..| .-.|..++. .++.++...+||+-+-.
T Consensus 120 --sHq~~EDiaimR~lpn~~V~~P~D~v~~~----~i~~~~~~~~GP~Y~Rl 165 (312)
T COG3958 120 --SHQALEDIAIMRGLPNMTVIAPADAVETR----AILDQIADYKGPVYMRL 165 (312)
T ss_pred --cchhHHHHHHHhcCCCceEEccCcHHHHH----HHHHHHHhcCCCEEEEe
Confidence 1112444444446665543 344544444 45556667789988755
No 270
>PLN02527 aspartate carbamoyltransferase
Probab=30.20 E-value=5.5e+02 Score=25.87 Aligned_cols=172 Identities=13% Similarity=0.077 Sum_probs=82.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHhcCeecc--cccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCC
Q 013928 81 NLLITKQEGLELYEDMILGRSFEDMC-AQMYYRGKMFG--FVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGV 157 (434)
Q Consensus 81 ~~~~s~e~ll~ly~~M~~~R~fe~~~-~~~~~~gk~~G--~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~ 157 (434)
...++++++..++......+.....- ......||..+ |+-+|.=--..--..+..|. +..++-.-..-...+.+|-
T Consensus 6 ~~d~s~~el~~ll~~A~~~k~~~~~~~~~~~L~gk~v~llF~epStRTR~SFe~A~~~LG-g~~i~l~~~~~~s~~~kgE 84 (306)
T PLN02527 6 AQQFDREMLELLFEVAREMEKVERGSPGSQMLKGYLMATLFYEPSTRTRLSFESAMKRLG-GEVLTTENAGEFSSAAKGE 84 (306)
T ss_pred hhhCCHHHHHHHHHHHHHHHhhhhcCCccccCCCCEEEEEEcCCCchhHHHHHHHHHHcC-CCEEEeCCCCCccccCCCc
Confidence 35678999999988766665432110 00123455433 33333222211111223443 4555443321123466788
Q ss_pred CHHHHHHHHhcCCCCCc-cC-CCCCcccccCCCcccCCcc--cccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCc
Q 013928 158 PARAVMSELFGKATGCC-RG-QGGSMHMFSKEHNLLGGFA--FIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGD 233 (434)
Q Consensus 158 ~~~~i~~el~g~~~g~~-~G-~ggs~h~~~~~~~~~~~~g--~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GD 233 (434)
++.+..+-+-.-.+... +. ..+..+.......++-.++ ..+.....++.=.+..+.... .-+.+.|+++||
T Consensus 85 s~~Dta~vls~y~D~iviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-----~l~g~kva~vGD 159 (306)
T PLN02527 85 TLEDTIRTVEGYSDIIVLRHFESGAARRAAATAEIPVINAGDGPGQHPTQALLDVYTIQREIG-----RLDGIKVGLVGD 159 (306)
T ss_pred CHHHHHHHHHHhCcEEEEECCChhHHHHHHHhCCCCEEECCCCCCCChHHHHHHHHHHHHHhC-----CcCCCEEEEECC
Confidence 88888776555432211 11 1111111111111111111 124667777776666543211 235689999999
Q ss_pred cccccchHHHHHHHHHHc-CCCeEEEE
Q 013928 234 GTCNNGQFFECLNMAALW-KLPIVFVV 259 (434)
Q Consensus 234 Ga~~~G~~~EaLn~A~~~-~LPvI~VV 259 (434)
+.-+ ...+.-+..+..+ +..+.+++
T Consensus 160 ~~~~-rv~~Sl~~~~~~~~g~~v~~~~ 185 (306)
T PLN02527 160 LANG-RTVRSLAYLLAKYEDVKIYFVA 185 (306)
T ss_pred CCCC-hhHHHHHHHHHhcCCCEEEEEC
Confidence 9742 2345445554555 55555553
No 271
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=30.13 E-value=3.9e+02 Score=28.73 Aligned_cols=148 Identities=17% Similarity=0.131 Sum_probs=71.5
Q ss_pred HHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeC
Q 013928 153 LSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFG 232 (434)
Q Consensus 153 La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~G 232 (434)
+..|++++.++.-+-.-.+ ..||-...+...+ .+.-.++ ..|.++=.++..-.. ..+..++|++|
T Consensus 302 ~~lG~~~e~i~~~l~~~~~--v~GRmE~v~~~~~--~v~VDyA----HnPd~le~~L~~~~~-------~~~g~li~VfG 366 (475)
T COG0769 302 LALGVDLEDILAGLETLKP--VPGRMELVNIGGK--LVIVDYA----HNPDGLEKALRAVRL-------HAAGRLIVVFG 366 (475)
T ss_pred HHcCCCHHHHHHHHHhcCC--CCCcceEecCCCC--eEEEEec----cChHHHHHHHHHHHh-------hcCCcEEEEEC
Confidence 3489999999887665443 2345433333322 1111122 235555444432211 12334777776
Q ss_pred ccccc-cchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHH
Q 013928 233 DGTCN-NGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIER 311 (434)
Q Consensus 233 DGa~~-~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ 311 (434)
=|+=. .+ .-.-|...+....++++|..+|- .-. .+..-+.++..++.-+.... -..+-.+|++.|++.
T Consensus 367 ~gGDrD~~-kr~~mg~ia~~~ad~vivt~dnp-R~e------dp~~i~~~i~~g~~~~~~~~---~~~dr~~AI~~ai~~ 435 (475)
T COG0769 367 CGGDRDKS-KRPDMGAIAEQLADIVIVTSDNP-RSE------DPAVILADILAGIEAPEKYE---IIEDREEAIRKALDL 435 (475)
T ss_pred ccCCCCcc-cccchHHHHHhcCCcEEEcCCCC-CCc------CHHHHHHHHHhccCCcccee---cchhHHHHHHHHHHh
Confidence 55532 22 12233344455556888887775 111 01112233333332221111 112456788888887
Q ss_pred HHccCCCEEEEEEEecCCCCC
Q 013928 312 ARRGEGPTLVECETYRFRGHS 332 (434)
Q Consensus 312 ar~~~gP~lIev~t~R~~gHs 332 (434)
+. .+++++.. +.||.
T Consensus 436 a~--~~D~vlia----gkGhe 450 (475)
T COG0769 436 AK--EGDVVLIA----GKGHE 450 (475)
T ss_pred hc--cCCEEEEe----eccch
Confidence 75 56776665 67775
No 272
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=28.84 E-value=4.7e+02 Score=25.03 Aligned_cols=79 Identities=19% Similarity=0.168 Sum_probs=41.7
Q ss_pred CCceEEEEeCccccccc-hHH-HHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhcccc--CCCcE-EEEeCCC
Q 013928 223 CDHVTLAFFGDGTCNNG-QFF-ECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPA--FGMPG-FHVDGMD 297 (434)
Q Consensus 223 ~d~~vv~~~GDGa~~~G-~~~-EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a--~Gi~~-~~VdG~D 297 (434)
..++||-+.|||--|.| .-. .+-..+...++ +. |+..|....... ..++....+. .|-|+ +.+...+
T Consensus 115 ~~RrVIDvSGDG~~N~G~~p~~~ard~~~~~Gi-----tI-NgL~I~~~~~~~--~~~L~~yy~~~VIgGpgAFV~~a~~ 186 (205)
T PF06707_consen 115 CWRRVIDVSGDGPNNQGPRPVTSARDAAVAAGI-----TI-NGLAILDDDPFG--GADLDAYYRRCVIGGPGAFVETARG 186 (205)
T ss_pred CceEEEEECCCCCCCCCCCccHHHHHHHHHCCe-----EE-eeeEecCCCCCc--cccHHHHHhhhcccCCCceEEEcCC
Confidence 56899999999999998 333 23333333343 12 443444332211 1134443333 24444 4445556
Q ss_pred HHHHHHHHHHHH
Q 013928 298 VLKVREVAKEAI 309 (434)
Q Consensus 298 ~~av~~a~~~Al 309 (434)
..+..+++++-+
T Consensus 187 ~~df~~AirrKL 198 (205)
T PF06707_consen 187 FEDFAEAIRRKL 198 (205)
T ss_pred HHHHHHHHHHHH
Confidence 667777766544
No 273
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=27.64 E-value=3.9e+02 Score=25.39 Aligned_cols=104 Identities=23% Similarity=0.263 Sum_probs=67.3
Q ss_pred HHHHHHHHHH-cCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCE
Q 013928 241 FFECLNMAAL-WKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT 319 (434)
Q Consensus 241 ~~EaLn~A~~-~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~ 319 (434)
..|.+-.+.. ...|+|.++.++. +...+.+...|+-++-|++-|..-+...+.-|+.+-.....
T Consensus 65 ~~e~~~~~~~~~~~piv~lt~~s~-------------p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~~~~~-- 129 (194)
T COG3707 65 IIEALLLASENVARPIVALTAYSD-------------PALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFEERRA-- 129 (194)
T ss_pred HHHHHHHhhcCCCCCEEEEEccCC-------------hHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHHHHHH--
Confidence 3555555554 4555776665443 45667788899999999999999999988877765433210
Q ss_pred EEEEEEecCCCCCCCCCCCCCCHHHHH----HHhcCChHHHHHHHHHHcCCCCHHH-HHHHHHHHH
Q 013928 320 LVECETYRFRGHSLADPDELRDPAEKA----RYAARDPITALKKYLIESSLASEAE-LKAIEKKID 380 (434)
Q Consensus 320 lIev~t~R~~gHs~~D~~~yR~~~e~~----~~~~~DPl~~~~~~L~~~G~~te~e-~~~i~~e~~ 380 (434)
. ..|.+ ....+.-|.+.+-.|.++..++|+| .+.+++..-
T Consensus 130 -------------------L--~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~EAy~~lR~~AM 174 (194)
T COG3707 130 -------------------L--RRELAKLKDRLEERKVIERAKGLLMKRRGLSEEEAYKLLRRTAM 174 (194)
T ss_pred -------------------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 1 11222 2234567888888888877788766 455554443
No 274
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=24.63 E-value=2.9e+02 Score=30.77 Aligned_cols=87 Identities=17% Similarity=0.097 Sum_probs=44.1
Q ss_pred cccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccc-----hHHHHHHHHHH---cCCCeEEEEEcCCccCccc
Q 013928 198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG-----QFFECLNMAAL---WKLPIVFVVENNLWAIGMS 269 (434)
Q Consensus 198 G~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G-----~~~EaLn~A~~---~~LPvI~VV~NN~y~is~~ 269 (434)
|.+.|++-|...|.++...........+.+|+++.||-.+.+ ...+++..|.. .++++++|-..+.
T Consensus 538 gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~~~vIdt~~~------ 611 (633)
T TIGR02442 538 GGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDTESG------ 611 (633)
T ss_pred CCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCC------
Confidence 445666666666655443110111235678999999987653 12344444443 4555444421111
Q ss_pred ccccccCchhhhccccCCCcEEEE
Q 013928 270 HLRATSDPQIYKKGPAFGMPGFHV 293 (434)
Q Consensus 270 ~~~~~~~~d~~~~a~a~Gi~~~~V 293 (434)
........++|+..|..++.+
T Consensus 612 ---~~~~~~~~~lA~~~gg~y~~l 632 (633)
T TIGR02442 612 ---FVRLGLAEDLARALGGEYVRL 632 (633)
T ss_pred ---CcchhHHHHHHHhhCCeEEec
Confidence 011123556667777776654
No 275
>PF02979 NHase_alpha: Nitrile hydratase, alpha chain; InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase []. This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....
Probab=24.52 E-value=1.4e+02 Score=28.03 Aligned_cols=39 Identities=28% Similarity=0.268 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHH-----HHHHHHHhhh
Q 013928 354 ITALKKYLIESSLASEAELKAIEKKIDEV-----VEDAVEFADE 392 (434)
Q Consensus 354 l~~~~~~L~~~G~~te~e~~~i~~e~~~~-----v~~a~~~A~~ 392 (434)
...++..|+++|+++.++++++.+.+... -.+.+..||.
T Consensus 9 ~~al~~ll~ekg~~~~~~~~~~~~~~~~~~~P~~GarvVArAW~ 52 (188)
T PF02979_consen 9 VRALESLLIEKGLITPAEVDRIIETYESRVGPRNGARVVARAWT 52 (188)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHHHHTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhccCccccceeehhhhC
Confidence 35689999999999999999998888766 2344566665
No 276
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=23.92 E-value=5.4e+02 Score=26.33 Aligned_cols=104 Identities=27% Similarity=0.327 Sum_probs=52.1
Q ss_pred chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHH--------HcCCCeEEEEEcCCccCcccccc
Q 013928 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAA--------LWKLPIVFVVENNLWAIGMSHLR 272 (434)
Q Consensus 201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~--------~~~LPvI~VV~NN~y~is~~~~~ 272 (434)
.++|+|+|+. +-..++=..+.| |..-.+-+-+|-|+ .|..|+++=.-+.+ ++....++
T Consensus 62 ~G~avGaA~~-----------GlrPivEiqf~d--F~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~-g~~~~~~H 127 (324)
T COG0022 62 AGIAVGAALT-----------GLRPIVEIQFAD--FIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGG-GIGGGAQH 127 (324)
T ss_pred HHHHHHHHHc-----------CCcceEEEEecc--hhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCC-CCCchhhc
Confidence 4668999987 433334344444 32222455555555 45678887766665 55444322
Q ss_pred cccCchhhhccccCCCcEEEEeC-CCHHHHHHHHHHHHHHHHccCCCEEE-EEE-Eec
Q 013928 273 ATSDPQIYKKGPAFGMPGFHVDG-MDVLKVREVAKEAIERARRGEGPTLV-ECE-TYR 327 (434)
Q Consensus 273 ~~~~~d~~~~a~a~Gi~~~~VdG-~D~~av~~a~~~Al~~ar~~~gP~lI-ev~-t~R 327 (434)
+.++..++. .+|+++|-- .++.+-.--++.|+ +.+-|+++ |=+ .||
T Consensus 128 ---Sqs~ea~f~--h~PGlKVV~PStpyDAKGLL~aAI----rd~dPViflE~k~lY~ 176 (324)
T COG0022 128 ---SQSLEALFA--HIPGLKVVMPSTPYDAKGLLKAAI----RDPDPVIFLEHKRLYR 176 (324)
T ss_pred ---cCCHHHHHh--cCCCceEEecCChHHHHHHHHHHh----cCCCCEEEEecHHHhc
Confidence 223444332 355554422 23444444444444 45567664 432 455
No 277
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=23.56 E-value=2.1e+02 Score=20.62 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 013928 354 ITALKKYLIESSLASEAELKAIEKKIDEVVED 385 (434)
Q Consensus 354 l~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~ 385 (434)
+..|++.|.+.|. +++++++-.+++++.+.+
T Consensus 13 ~~elrd~LEe~g~-~~eeIe~kv~~~R~~L~~ 43 (46)
T PF08312_consen 13 CLELRDELEEQGY-SEEEIEEKVDELRKKLLE 43 (46)
T ss_dssp HHHHHHHHHHHT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHh
Confidence 4568999999996 889888888777776644
No 278
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=22.88 E-value=3.5e+02 Score=25.25 Aligned_cols=54 Identities=19% Similarity=0.386 Sum_probs=32.5
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCC--eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEe
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD 294 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP--vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~Vd 294 (434)
+++|...|.|+..+. -++.....+++ |..||-|+. . -...++|+.+|+|++.++
T Consensus 2 riail~sg~gs~~~~----ll~~~~~~~l~~~I~~vi~~~~-~-----------~~~~~~A~~~gip~~~~~ 57 (190)
T TIGR00639 2 RIVVLISGNGSNLQA----IIDACKEGKIPASVVLVISNKP-D-----------AYGLERAAQAGIPTFVLS 57 (190)
T ss_pred eEEEEEcCCChhHHH----HHHHHHcCCCCceEEEEEECCc-c-----------chHHHHHHHcCCCEEEEC
Confidence 467888888877543 23333344554 555566653 1 123466778899988765
No 279
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=22.59 E-value=1.7e+02 Score=26.35 Aligned_cols=41 Identities=17% Similarity=0.374 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 013928 352 DPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADE 392 (434)
Q Consensus 352 DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~ 392 (434)
+-+...++++.+.|-+|++|++.+.+-++..+++..+....
T Consensus 18 ~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 18 EALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999988776544
No 280
>PLN03013 cysteine synthase
Probab=22.32 E-value=2.7e+02 Score=29.64 Aligned_cols=10 Identities=0% Similarity=0.129 Sum_probs=4.4
Q ss_pred HcCCCeEEEE
Q 013928 250 LWKLPIVFVV 259 (434)
Q Consensus 250 ~~~LPvI~VV 259 (434)
..++|+++|+
T Consensus 196 ~~G~~~~Vvv 205 (429)
T PLN03013 196 SRGYRLILTM 205 (429)
T ss_pred HcCCCEEEEE
Confidence 4444444443
No 281
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=22.13 E-value=1.9e+02 Score=23.28 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=29.6
Q ss_pred cCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 013928 350 ARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVE 388 (434)
Q Consensus 350 ~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~ 388 (434)
.++-+.-+-+.|++.++++++|.+.|.++-....+.|..
T Consensus 14 ~~~~i~~llD~Ll~~~Vl~~~E~e~i~~~~~t~~dkar~ 52 (83)
T cd08325 14 GKGVINGLLDDLLEKNVLNEEEMEKIKEENNTIMDKARV 52 (83)
T ss_pred hHhhHHHHHHHHHHcCCCCHHHHHHHHhccCCHHHHHHH
Confidence 446677888999999999999999999875444444433
No 282
>PRK10490 sensor protein KdpD; Provisional
Probab=21.85 E-value=3e+02 Score=32.04 Aligned_cols=94 Identities=12% Similarity=-0.013 Sum_probs=53.2
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeE-EEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIV-FVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI-~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~ 302 (434)
+++.||+.|+ ..++-.+--+..+|...+.|++ +.|+....... .......-.+..+.|+.+|..+..+.|.|+.+.
T Consensus 251 eriLV~v~~~-~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~-~~~~~~~l~~~~~lA~~lGa~~~~~~~~dva~~- 327 (895)
T PRK10490 251 DAILLCIGHN-TGSEKLVRTAARLAARLGSVWHAVYVETPRLHRL-PEKKRRAILSALRLAQELGAETATLSDPAEEKA- 327 (895)
T ss_pred CeEEEEECCC-cchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcC-CHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHH-
Confidence 3456666665 4555566788899999999933 33333321111 111111112233688999999999999986532
Q ss_pred HHHHHHHHHHHccCCCEEEEEEE
Q 013928 303 EVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 303 ~a~~~Al~~ar~~~gP~lIev~t 325 (434)
.+++|+..+-..+|--+.
T Consensus 328 -----i~~~A~~~~vt~IViG~s 345 (895)
T PRK10490 328 -----VLRYAREHNLGKIIIGRR 345 (895)
T ss_pred -----HHHHHHHhCCCEEEECCC
Confidence 345565554444444433
No 283
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=21.51 E-value=2.7e+02 Score=26.78 Aligned_cols=67 Identities=13% Similarity=0.204 Sum_probs=41.3
Q ss_pred eEEEEEcCCccCccccccccc---CchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 255 IVFVVENNLWAIGMSHLRATS---DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 255 vI~VV~NN~y~is~~~~~~~~---~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
+.+||.|..|.- .. ....+ ...+.+.++.+|+.+......+..++.+++++..++....+..+++-+
T Consensus 10 ~alII~n~~f~~-~~-~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~ 79 (241)
T smart00115 10 LALIINNENFHS-LP-RRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCV 79 (241)
T ss_pred EEEEEECccCCC-Cc-CCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEE
Confidence 666666666542 11 11111 134677788899999988888888998888876543222244555554
No 284
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=21.33 E-value=5.5e+02 Score=30.23 Aligned_cols=112 Identities=14% Similarity=0.104 Sum_probs=59.8
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEE--EEeCccccc-cchHHHHHHH-HHHcCC--CeEEEEEcCCccCccccccc
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTL--AFFGDGTCN-NGQFFECLNM-AALWKL--PIVFVVENNLWAIGMSHLRA 273 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv--~~~GDGa~~-~G~~~EaLn~-A~~~~L--PvI~VV~NN~y~is~~~~~~ 273 (434)
-++.++|+|+. +++.+|| +-+||=+.. |-.+-+-++. +..|+. ++|+.+ -.+|....+.+.+
T Consensus 659 ~~G~~~G~a~~-----------g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~-p~G~~g~g~~hsS 726 (929)
T TIGR00239 659 VLGFEYGYATT-----------SPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLL-PHGYEGQGPEHSS 726 (929)
T ss_pred HHHHHHhHHhc-----------CCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEEe-cCcCCCCCchhhc
Confidence 35567888887 6666644 445553321 2224555676 567765 455443 3445655554433
Q ss_pred ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHH-HHHHHHccCCCEEEEEE--EecC
Q 013928 274 TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKE-AIERARRGEGPTLVECE--TYRF 328 (434)
Q Consensus 274 ~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~-Al~~ar~~~gP~lIev~--t~R~ 328 (434)
.+...+.+.+.--||.++... .+.+.+..+++ |+ |..+.|+++--. .||.
T Consensus 727 ~~~E~~lql~~~~gl~Vv~ps--tpad~~~lLrrqa~---r~~~~Pvi~~~~K~L~r~ 779 (929)
T TIGR00239 727 GRLERFLQLAAEQNMQVCVPT--TPAQVFHILRRQAL---RGMRRPLVVMSPKSLLRH 779 (929)
T ss_pred cCHHHHHHHhCCCCCEEEecC--CHHHHHHHHHHHHH---hCCCCCEEEeccHhhhcC
Confidence 333344443433466655544 55666666663 43 345789887653 3553
No 285
>PLN02828 formyltetrahydrofolate deformylase
Probab=20.88 E-value=5e+02 Score=25.80 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=39.7
Q ss_pred CCceEEEEeCccccccchHHHHHHHHHHcC-CC--eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeC
Q 013928 223 CDHVTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 295 (434)
Q Consensus 223 ~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~-LP--vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG 295 (434)
+.+++|.+.|-|+. .++|-.+...+ || |+.||-|+.=. +..++.++|+.+|+|++.+.-
T Consensus 70 ~~riavlvSg~g~n-----l~~ll~~~~~g~l~~eI~~ViSn~~~~---------~~a~~~~~A~~~gIP~~~~~~ 131 (268)
T PLN02828 70 KYKIAVLASKQDHC-----LIDLLHRWQDGRLPVDITCVISNHERG---------PNTHVMRFLERHGIPYHYLPT 131 (268)
T ss_pred CcEEEEEEcCCChh-----HHHHHHhhhcCCCCceEEEEEeCCCCC---------CCchHHHHHHHcCCCEEEeCC
Confidence 45678888888776 44566655433 44 88888887411 123677889999999987643
No 286
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=20.67 E-value=6.5e+02 Score=22.94 Aligned_cols=69 Identities=10% Similarity=0.003 Sum_probs=43.0
Q ss_pred CceEEEEeCccccc-cchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928 224 DHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302 (434)
Q Consensus 224 d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~ 302 (434)
.+.++++++||.-. .+...+....+...++.|.+|-..+. ..-+.+++++-|-.++.+. |..++.
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~------------~~~L~~ia~~tgG~~~~~~--~~~~l~ 172 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAE------------MHICKEICKATNGTYKVIL--DETHLK 172 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechH------------HHHHHHHHHHhCCeeEeeC--CHHHHH
Confidence 35578888888754 33345666677777877655533211 1236778888898888875 444655
Q ss_pred HHHH
Q 013928 303 EVAK 306 (434)
Q Consensus 303 ~a~~ 306 (434)
+.+.
T Consensus 173 ~~~~ 176 (183)
T cd01453 173 ELLL 176 (183)
T ss_pred HHHH
Confidence 5444
No 287
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=20.53 E-value=1.6e+02 Score=31.27 Aligned_cols=45 Identities=18% Similarity=0.165 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccC
Q 013928 99 GRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTY 146 (434)
Q Consensus 99 ~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~y 146 (434)
.+.||+.+.++..... -+..+-|..|+..++..+++++|.|+.+-
T Consensus 63 v~~lE~~la~leg~~~---av~~~SG~aAi~~al~all~~GD~VI~~~ 107 (432)
T PRK06702 63 LAAFEQKLAELEGGVG---AVATASGQAAIMLAVLNICSSGDHLLCSS 107 (432)
T ss_pred HHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHHHhcCCCCEEEECC
Confidence 6779998888764322 23357999999988888899999887643
No 288
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=20.38 E-value=1.1e+02 Score=22.74 Aligned_cols=19 Identities=26% Similarity=0.566 Sum_probs=15.3
Q ss_pred HHHHHHHcCCCCHHHHHHH
Q 013928 357 LKKYLIESSLASEAELKAI 375 (434)
Q Consensus 357 ~~~~L~~~G~~te~e~~~i 375 (434)
.++..++.|++|+++++++
T Consensus 28 vre~v~~~g~lt~ee~d~l 46 (55)
T PF10415_consen 28 VREVVLEEGLLTEEELDEL 46 (55)
T ss_dssp HHHHHHHTTSS-HHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHH
Confidence 6677789999999999876
No 289
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=20.21 E-value=2e+02 Score=29.16 Aligned_cols=53 Identities=26% Similarity=0.298 Sum_probs=35.1
Q ss_pred CccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCH
Q 013928 232 GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDV 298 (434)
Q Consensus 232 GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~ 298 (434)
|+... .| +.|+|+.....+ .-+++|.||. . .+..++.++++.+|+.. |+.+++
T Consensus 36 g~~~i-pG-s~e~l~~L~~~g-K~i~fvTNNS-t--------ksr~~y~kK~~~lG~~~--v~e~~i 88 (306)
T KOG2882|consen 36 GEKPI-PG-SPEALNLLKSLG-KQIIFVTNNS-T--------KSREQYMKKFAKLGFNS--VKEENI 88 (306)
T ss_pred cCCCC-CC-hHHHHHHHHHcC-CcEEEEeCCC-c--------chHHHHHHHHHHhCccc--cCcccc
Confidence 44433 34 489999999988 6777778886 1 12345677788888765 555543
Done!