Query 013928
Match_columns 434
No_of_seqs 283 out of 2544
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 19:43:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ozl_A PDHE1-A type I, pyruvat 100.0 1.8E-72 6.2E-77 572.4 37.4 321 81-412 28-350 (365)
2 1qs0_A 2-oxoisovalerate dehydr 100.0 7.4E-71 2.5E-75 567.6 40.2 323 81-411 68-398 (407)
3 1w85_A Pyruvate dehydrogenase 100.0 4.9E-69 1.7E-73 548.1 37.8 314 81-411 38-353 (368)
4 2bfd_A 2-oxoisovalerate dehydr 100.0 9.8E-68 3.3E-72 543.9 36.8 322 81-410 49-372 (400)
5 1umd_A E1-alpha, 2-OXO acid de 100.0 2.8E-65 9.5E-70 520.6 38.7 323 81-411 30-354 (367)
6 2yic_A 2-oxoglutarate decarbox 100.0 5.8E-58 2E-62 507.9 26.4 322 65-392 98-450 (868)
7 2xt6_A 2-oxoglutarate decarbox 100.0 7.1E-57 2.4E-61 510.0 28.1 321 66-392 344-695 (1113)
8 2jgd_A 2-oxoglutarate dehydrog 100.0 3.7E-56 1.3E-60 496.0 24.6 320 65-392 178-522 (933)
9 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 8.1E-31 2.8E-35 283.3 17.0 234 71-334 10-291 (621)
10 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 3.8E-30 1.3E-34 278.5 12.1 234 71-333 12-295 (629)
11 3rim_A Transketolase, TK; TPP, 100.0 7.8E-27 2.7E-31 254.1 26.5 145 188-336 126-278 (700)
12 1gpu_A Transketolase; transfer 100.0 2.9E-27 9.9E-32 257.8 22.2 227 117-354 29-281 (680)
13 2e6k_A Transketolase; structur 100.0 3.7E-28 1.3E-32 263.7 14.2 163 188-355 111-282 (651)
14 1r9j_A Transketolase; domains, 99.9 4.2E-26 1.4E-30 248.4 22.8 159 189-351 110-278 (673)
15 2r8o_A Transketolase 1, TK 1; 99.9 7E-27 2.4E-31 254.5 16.0 160 188-351 107-276 (669)
16 3l84_A Transketolase; TKT, str 99.9 7.1E-26 2.4E-30 244.5 21.3 205 117-335 27-250 (632)
17 1itz_A Transketolase; calvin c 99.9 4.8E-26 1.7E-30 248.0 19.5 159 188-350 120-289 (675)
18 3m49_A Transketolase; alpha-be 99.9 5.4E-26 1.8E-30 247.5 18.5 143 188-335 133-281 (690)
19 3uk1_A Transketolase; structur 99.9 1E-25 3.5E-30 245.8 17.1 148 188-340 148-301 (711)
20 3mos_A Transketolase, TK; thia 99.9 5.6E-25 1.9E-29 237.3 21.1 136 189-336 115-251 (616)
21 3kom_A Transketolase; rossmann 99.9 7.8E-25 2.7E-29 237.7 19.7 143 188-335 109-257 (663)
22 2qtc_A Pyruvate dehydrogenase 99.9 1.4E-23 4.9E-28 233.4 19.4 275 72-351 60-423 (886)
23 4feg_A Pyruvate oxidase; carba 99.9 6.6E-23 2.3E-27 220.6 10.4 164 191-371 416-596 (603)
24 1v5e_A Pyruvate oxidase; oxido 99.7 2.8E-17 9.7E-22 176.3 10.9 122 192-329 410-541 (590)
25 2pan_A Glyoxylate carboligase; 99.7 5.4E-17 1.8E-21 174.9 8.8 124 191-329 438-582 (616)
26 1q6z_A BFD, BFDC, benzoylforma 99.7 3.5E-17 1.2E-21 173.1 6.5 114 195-327 401-525 (528)
27 2pgn_A Cyclohexane-1,2-dione h 99.6 1.3E-16 4.3E-21 171.2 6.8 122 192-332 421-552 (589)
28 1ozh_A ALS, acetolactate synth 99.6 1.5E-16 5.2E-21 169.8 6.5 119 191-328 416-544 (566)
29 1t9b_A Acetolactate synthase, 99.6 2.3E-16 8E-21 171.9 7.5 121 191-330 509-640 (677)
30 1ovm_A Indole-3-pyruvate decar 99.6 3.4E-16 1.2E-20 166.3 8.3 118 191-327 404-532 (552)
31 2iht_A Carboxyethylarginine sy 99.6 2.6E-16 9E-21 168.1 7.2 118 191-327 432-561 (573)
32 1ybh_A Acetolactate synthase, 99.6 3.3E-16 1.1E-20 167.9 7.9 122 191-331 422-562 (590)
33 2vbi_A Pyruvate decarboxylase; 99.6 2.9E-16 9.9E-21 167.5 6.9 153 157-328 361-534 (566)
34 2vk8_A Pyruvate decarboxylase 99.6 3.2E-16 1.1E-20 167.0 7.1 157 157-327 365-542 (563)
35 3eya_A Pyruvate dehydrogenase 99.6 5.6E-16 1.9E-20 164.8 8.4 120 191-329 402-531 (549)
36 2wvg_A PDC, pyruvate decarboxy 99.6 5.3E-16 1.8E-20 165.5 8.1 118 191-327 409-541 (568)
37 2c31_A Oxalyl-COA decarboxylas 99.6 6.4E-16 2.2E-20 164.9 8.7 120 190-329 421-549 (568)
38 2vbf_A Branched-chain alpha-ke 99.6 5.4E-16 1.8E-20 165.5 7.8 119 191-327 421-551 (570)
39 2uz1_A Benzaldehyde lyase; thi 99.6 5.1E-16 1.7E-20 165.5 6.5 120 191-327 415-546 (563)
40 2nxw_A Phenyl-3-pyruvate decar 99.6 5.2E-16 1.8E-20 165.6 5.6 118 191-327 418-542 (565)
41 2q28_A Oxalyl-COA decarboxylas 99.6 2.8E-15 9.4E-20 159.8 10.4 119 191-330 417-547 (564)
42 3ahc_A Phosphoketolase, xylulo 99.6 2.4E-15 8.2E-20 165.4 8.4 196 116-329 82-322 (845)
43 3hww_A 2-succinyl-5-enolpyruvy 99.5 2.4E-15 8.3E-20 160.2 5.2 151 156-327 366-539 (556)
44 2x7j_A 2-succinyl-5-enolpyruvy 99.5 1.4E-15 4.8E-20 163.5 2.9 116 192-327 452-580 (604)
45 3lq1_A 2-succinyl-5-enolpyruvy 99.5 1.6E-14 5.6E-19 154.4 4.7 111 197-328 438-561 (578)
46 2c42_A Pyruvate-ferredoxin oxi 99.1 3.2E-10 1.1E-14 130.5 12.7 99 224-328 953-1071(1231)
47 2pgn_A Cyclohexane-1,2-dione h 93.1 0.57 2E-05 49.6 12.0 95 223-325 68-164 (589)
48 2uz1_A Benzaldehyde lyase; thi 92.9 0.37 1.3E-05 50.7 10.0 97 224-326 67-164 (563)
49 1ybh_A Acetolactate synthase, 92.8 0.34 1.2E-05 51.3 9.5 107 202-325 64-171 (590)
50 2iht_A Carboxyethylarginine sy 92.6 0.33 1.1E-05 51.2 9.1 96 224-326 74-171 (573)
51 1ozh_A ALS, acetolactate synth 92.6 0.35 1.2E-05 51.0 9.3 96 224-326 74-170 (566)
52 3eya_A Pyruvate dehydrogenase 92.2 0.51 1.7E-05 49.5 9.9 94 224-325 67-161 (549)
53 2wvg_A PDC, pyruvate decarboxy 92.0 0.69 2.4E-05 48.6 10.8 98 224-326 66-169 (568)
54 1yd7_A 2-keto acid:ferredoxin 92.0 0.18 6.1E-06 51.1 5.9 109 200-326 76-188 (395)
55 1t9b_A Acetolactate synthase, 91.5 0.64 2.2E-05 50.3 9.9 106 202-324 134-240 (677)
56 4feg_A Pyruvate oxidase; carba 91.1 0.87 3E-05 48.4 10.4 93 224-324 76-169 (603)
57 2vbi_A Pyruvate decarboxylase; 91.1 0.98 3.4E-05 47.4 10.7 98 224-326 66-169 (566)
58 2nxw_A Phenyl-3-pyruvate decar 91.1 0.64 2.2E-05 48.9 9.3 98 224-326 85-186 (565)
59 1v5e_A Pyruvate oxidase; oxido 90.1 0.52 1.8E-05 50.0 7.5 92 225-324 70-162 (590)
60 1q6z_A BFD, BFDC, benzoylforma 89.5 0.91 3.1E-05 47.2 8.7 97 224-326 64-161 (528)
61 2pan_A Glyoxylate carboligase; 89.4 1.4 4.8E-05 46.8 10.3 94 225-325 93-187 (616)
62 2x7j_A 2-succinyl-5-enolpyruvy 89.2 1.4 4.9E-05 46.6 10.2 98 224-326 95-198 (604)
63 2c31_A Oxalyl-COA decarboxylas 88.1 0.86 3E-05 47.9 7.4 95 224-325 73-170 (568)
64 2q28_A Oxalyl-COA decarboxylas 88.1 0.82 2.8E-05 48.0 7.2 95 224-325 71-168 (564)
65 3lq1_A 2-succinyl-5-enolpyruvy 87.5 2.6 8.8E-05 44.4 10.7 98 222-325 73-177 (578)
66 3mos_A Transketolase, TK; thia 87.5 1.7 6E-05 46.4 9.4 89 225-323 381-470 (616)
67 2r8o_A Transketolase 1, TK 1; 87.4 2.7 9.4E-05 45.3 11.0 101 201-323 415-518 (669)
68 2e6k_A Transketolase; structur 87.0 2.8 9.6E-05 45.1 10.7 101 201-323 410-513 (651)
69 3kom_A Transketolase; rossmann 86.1 3 0.0001 45.0 10.3 101 201-323 416-519 (663)
70 1gpu_A Transketolase; transfer 85.0 3.2 0.00011 44.9 9.9 101 201-323 422-526 (680)
71 2vk8_A Pyruvate decarboxylase 84.5 2 6.7E-05 45.0 7.9 96 225-325 68-169 (563)
72 3l84_A Transketolase; TKT, str 84.3 3.3 0.00011 44.4 9.6 100 201-323 395-497 (632)
73 2vbf_A Branched-chain alpha-ke 82.8 2.9 0.0001 43.8 8.3 97 224-326 88-190 (570)
74 1ovm_A Indole-3-pyruvate decar 82.2 2.7 9.3E-05 43.8 7.8 107 202-325 57-169 (552)
75 1itz_A Transketolase; calvin c 82.0 3.7 0.00013 44.3 9.0 101 201-323 427-531 (675)
76 3hww_A 2-succinyl-5-enolpyruvy 81.8 6.8 0.00023 40.9 10.7 96 222-325 70-170 (556)
77 2o1s_A 1-deoxy-D-xylulose-5-ph 81.7 4.5 0.00015 43.1 9.3 101 201-323 374-476 (621)
78 2o1x_A 1-deoxy-D-xylulose-5-ph 81.5 2.8 9.5E-05 44.9 7.6 100 201-323 377-478 (629)
79 3m49_A Transketolase; alpha-be 81.4 6.9 0.00023 42.4 10.7 74 242-323 467-543 (690)
80 1r9j_A Transketolase; domains, 80.7 7.1 0.00024 42.1 10.6 100 202-323 416-518 (673)
81 1ik6_A Pyruvate dehydrogenase; 79.5 4.9 0.00017 40.1 8.2 98 201-323 111-219 (369)
82 2ozl_B PDHE1-B, pyruvate dehyd 78.2 3.7 0.00013 40.5 6.8 99 200-324 74-184 (341)
83 3uk1_A Transketolase; structur 76.3 9.2 0.00032 41.6 9.8 100 201-323 461-563 (711)
84 2c42_A Pyruvate-ferredoxin oxi 74.6 12 0.00043 43.1 10.7 112 201-332 67-178 (1231)
85 1qs0_B 2-oxoisovalerate dehydr 72.9 7.2 0.00025 38.1 7.3 101 200-324 64-174 (338)
86 3rim_A Transketolase, TK; TPP, 71.7 16 0.00054 39.7 10.2 74 242-323 472-550 (700)
87 2bfd_B 2-oxoisovalerate dehydr 68.7 5.7 0.00019 39.1 5.4 99 200-323 79-189 (342)
88 1w85_B Pyruvate dehydrogenase 63.5 19 0.00065 34.8 8.0 99 200-323 62-171 (324)
89 1umd_B E1-beta, 2-OXO acid deh 62.8 33 0.0011 33.1 9.6 99 200-323 63-172 (324)
90 2jgd_A 2-oxoglutarate dehydrog 54.8 31 0.0011 38.7 8.7 104 200-322 664-776 (933)
91 2yic_A 2-oxoglutarate decarbox 48.7 45 0.0015 37.1 8.7 106 200-322 596-708 (868)
92 2xt6_A 2-oxoglutarate decarbox 43.2 57 0.0019 37.3 8.6 107 200-323 841-954 (1113)
93 3tqr_A Phosphoribosylglycinami 42.5 53 0.0018 30.1 6.9 56 223-295 5-62 (215)
94 2zzd_B Thiocyanate hydrolase s 42.3 34 0.0012 30.0 5.2 32 354-385 113-144 (157)
95 3ibs_A Conserved hypothetical 39.9 90 0.0031 27.2 7.9 72 224-295 111-197 (218)
96 4hhu_A OR280; engineered prote 39.7 38 0.0013 28.4 4.8 37 283-319 79-115 (170)
97 3kcq_A Phosphoribosylglycinami 37.3 57 0.0019 29.9 6.2 57 223-296 8-67 (215)
98 4ds3_A Phosphoribosylglycinami 36.7 1E+02 0.0034 28.1 7.8 55 224-295 8-65 (209)
99 3o1l_A Formyltetrahydrofolate 36.5 91 0.0031 30.1 7.8 53 223-294 105-160 (302)
100 3p9x_A Phosphoribosylglycinami 35.2 76 0.0026 29.0 6.7 54 225-295 4-60 (211)
101 3obi_A Formyltetrahydrofolate 34.5 73 0.0025 30.4 6.7 54 223-295 89-146 (288)
102 4hhu_A OR280; engineered prote 34.2 49 0.0017 27.7 4.6 33 287-319 2-34 (170)
103 3nrb_A Formyltetrahydrofolate 32.8 81 0.0028 30.1 6.7 55 223-295 88-145 (287)
104 2kl8_A OR15; structural genomi 32.8 52 0.0018 24.6 4.1 29 291-319 5-33 (85)
105 3av3_A Phosphoribosylglycinami 31.0 63 0.0021 29.3 5.4 55 225-295 5-61 (212)
106 1n3y_A Integrin alpha-X; alpha 29.8 87 0.003 26.8 6.0 81 224-312 110-193 (198)
107 3n0v_A Formyltetrahydrofolate 28.2 78 0.0027 30.2 5.7 53 223-294 90-145 (286)
108 1meo_A Phosophoribosylglycinam 27.6 1.6E+02 0.0053 26.7 7.4 81 225-326 2-88 (209)
109 3lou_A Formyltetrahydrofolate 27.1 77 0.0026 30.4 5.5 53 223-294 95-150 (292)
110 2x5n_A SPRPN10, 26S proteasome 27.1 67 0.0023 28.5 4.8 32 227-258 110-141 (192)
111 3ghf_A Septum site-determining 26.1 1.1E+02 0.0036 25.3 5.5 47 279-325 8-56 (120)
112 3da8_A Probable 5'-phosphoribo 24.1 1.1E+02 0.0037 28.0 5.6 52 225-294 14-67 (215)
113 1ugp_A NitrIle hydratase alpha 24.0 1E+02 0.0035 27.9 5.2 39 354-392 20-63 (203)
114 3hyn_A Putative signal transdu 21.5 71 0.0024 28.8 3.6 38 224-261 80-118 (189)
115 2ywr_A Phosphoribosylglycinami 21.4 94 0.0032 28.2 4.7 55 225-295 3-59 (216)
116 3hbm_A UDP-sugar hydrolase; PS 21.2 2.3E+02 0.0077 26.7 7.5 34 228-262 3-38 (282)
No 1
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=100.00 E-value=1.8e-72 Score=572.38 Aligned_cols=321 Identities=39% Similarity=0.717 Sum_probs=303.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHH
Q 013928 81 NLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPAR 160 (434)
Q Consensus 81 ~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~ 160 (434)
.+.+++++++++|+.|+++|.||+++..++++|++.||+|++.||||+++|++.+|+++|+|+++||+|++++++|+++.
T Consensus 28 ~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~~D~i~~~yR~~~~~~~~G~~~~ 107 (365)
T 2ozl_A 28 TTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVR 107 (365)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhCCCCEEehHHHHHHHHHhcCCCHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccch
Q 013928 161 AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQ 240 (434)
Q Consensus 161 ~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~ 240 (434)
++|+|++|+.++.++|++|+||+++. ++.+++|+||+++|+|+|+|+|.+++ +++++|||++|||++++|.
T Consensus 108 ~i~~e~~g~~~g~~~g~gg~~H~~~~--~~~~~~g~~G~~lp~A~G~A~A~~~~-------~~~~~vv~~~GDGa~~~G~ 178 (365)
T 2ozl_A 108 EILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIALACKYN-------GKDEVCLTLYGDGAANQGQ 178 (365)
T ss_dssp HHHHHHTTCTTSTTTTSSCTTCCCBT--TBCCCCCSTTTHHHHHHHHHHHHHHH-------TCCCCEEEEEETTGGGCHH
T ss_pred HHHHHHcCCCCCCCCCCCCCCCcCcc--ccCCCcchhhhhhHHHHHHHHHHHhc-------CCCceEEEEECchhhhccH
Confidence 99999999999999999999999653 78888999999999999999999887 5788999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEE
Q 013928 241 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTL 320 (434)
Q Consensus 241 ~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~l 320 (434)
++|+||+|+.|+||+||||+||+|+++++...+...+++.+ ++||+++++|||+|+++|++++++|+++++++++|+|
T Consensus 179 ~~Ealn~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~l 256 (365)
T 2ozl_A 179 IFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPIL 256 (365)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHHHCcCEEEEEECCCcccCCCcccccCCCCHHH--HhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 99999999999999999999999999997666656677776 6899999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCCC-CCCCHHHHHHHhc-CChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCc
Q 013928 321 VECETYRFRGHSLADPD-ELRDPAEKARYAA-RDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPR 398 (434)
Q Consensus 321 Iev~t~R~~gHs~~D~~-~yR~~~e~~~~~~-~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~ 398 (434)
||++|||.+||+++|++ .||+++|++.|++ +||+.+|+++|+++|+++++++++|+++++++|++++++|+++|.|++
T Consensus 257 Ie~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~ 336 (365)
T 2ozl_A 257 MELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPL 336 (365)
T ss_dssp EEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHSCCCCG
T ss_pred EEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 99999999999999976 6999999999985 799999999999999999999999999999999999999999999999
Q ss_pred chhhhcccCCCCCC
Q 013928 399 SQLLENVFADPKGF 412 (434)
Q Consensus 399 ~~l~~~vya~~~~~ 412 (434)
+++|+|||+++++.
T Consensus 337 ~~~~~~vy~~~~~~ 350 (365)
T 2ozl_A 337 EELGYHIYSSDPPF 350 (365)
T ss_dssp GGTTCSSSSSCCCE
T ss_pred HHHHhhhcCCCChh
Confidence 99999999977653
No 2
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=100.00 E-value=7.4e-71 Score=567.59 Aligned_cols=323 Identities=26% Similarity=0.372 Sum_probs=307.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHH
Q 013928 81 NLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPAR 160 (434)
Q Consensus 81 ~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~ 160 (434)
.+.+++|+++++|+.|+++|.||+++.++|++|++ +|+|++.||||+++|++.+|+++|+|+++||+|++.|++|+++.
T Consensus 68 ~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~-~~~~~~~GqEA~~vg~~~al~~~D~v~~~yR~~~~~l~~g~~~~ 146 (407)
T 1qs0_A 68 AEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM-SFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLV 146 (407)
T ss_dssp GSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SCCCCCTTTHHHHHHHHHHSCTTSEEECCSSCHHHHHHTTCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-ccCcCCCChHHHHHHHHHhcCCCCEEEecccchHHHHhcCCCHH
Confidence 36789999999999999999999999999999987 59999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccch
Q 013928 161 AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQ 240 (434)
Q Consensus 161 ~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~ 240 (434)
++|++++|+.++.++|+++++|++..+.++.+.+|+||+++|+|+|+|+|.+++ +++++|||++|||++++|.
T Consensus 147 ~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~-------~~~~~vv~i~GDGa~~~G~ 219 (407)
T 1qs0_A 147 EMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIK-------GDTKIASAWIGDGATAESD 219 (407)
T ss_dssp HHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHT-------TCCCCEEEEEETGGGGSHH
T ss_pred HHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHh-------CCCCEEEEEECCchhhcCh
Confidence 999999999998889999999999988899999999999999999999998876 5789999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEEEcCCccCcccccccc-cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCE
Q 013928 241 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT 319 (434)
Q Consensus 241 ~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~-~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~ 319 (434)
++|+||+|++|+||+||||+||+|+++++...+. ..+++++++++|||++++|||+|+++|++++++|+++++++++|+
T Consensus 220 ~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~ 299 (407)
T 1qs0_A 220 FHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPS 299 (407)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCE
T ss_pred HHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999999999999876665 568999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCC-CCCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhh------
Q 013928 320 LVECETYRFRGHSLAD-PDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADE------ 392 (434)
Q Consensus 320 lIev~t~R~~gHs~~D-~~~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~------ 392 (434)
|||++|||.+||+++| +..||+++|++.|+++|||.+|+++|+++|+++++++++|+++++++|++++++|++
T Consensus 300 lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~~~~ 379 (407)
T 1qs0_A 300 LIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLAN 379 (407)
T ss_dssp EEEEECCCCSCSSTTCCGGGTSCTTHHHHCTTCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSSS
T ss_pred EEEEEeeccCCcCCCCCccccCCHHHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 9999999999999997 567999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcchhhhcccCCCCC
Q 013928 393 SAPPPRSQLLENVFADPKG 411 (434)
Q Consensus 393 ~p~p~~~~l~~~vya~~~~ 411 (434)
+|.|+++++|+|||+++++
T Consensus 380 ~p~p~~~~~~~~vy~~~~~ 398 (407)
T 1qs0_A 380 GHIPSAASMFEDVYKEMPD 398 (407)
T ss_dssp CCCCCSSGGGSSSSSSCCH
T ss_pred CCCCCHHHHHhhccCCCCH
Confidence 5899999999999998654
No 3
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=100.00 E-value=4.9e-69 Score=548.07 Aligned_cols=314 Identities=30% Similarity=0.459 Sum_probs=294.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHH
Q 013928 81 NLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPAR 160 (434)
Q Consensus 81 ~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~ 160 (434)
.+.+++++++++|+.|+++|.||+++.+++++|++ ||+|++.||||+++|++.+|+++|+++++||+|++++++|+++.
T Consensus 38 ~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~-g~~~~~~G~Ea~~vg~~~~l~~~D~v~~~~R~~~~~~~~G~~~~ 116 (368)
T 1w85_A 38 MPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPLY 116 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CSCCCCTTCHHHHHHHHHTCCTTCEEECCSSCHHHHHHTTCCHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-ccCCCCCCHHHHHHHHHHhcCCcCEEEecchhHHHHHhcCCCHH
Confidence 35789999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccch
Q 013928 161 AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQ 240 (434)
Q Consensus 161 ~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~ 240 (434)
.+|.+++|+.+ |+++| .+.++.+++|+||+++|+|+|+|+|.+++ +++++|||++|||++++|.
T Consensus 117 ~~~~el~G~~~------G~~~h---~~~~~~~~~g~lG~~lp~AvG~A~A~~~~-------~~~~~vv~i~GDGa~~~G~ 180 (368)
T 1w85_A 117 QAFLFSRGHFH------GNQIP---EGVNVLPPQIIIGAQYIQAAGVALGLKMR-------GKKAVAITYTGDGGTSQGD 180 (368)
T ss_dssp HHHHHHHTCGG------GGCCC---TTCCBCCCCCSTTHHHHHHHHHHHHHHHT-------TCSCCEEEEEETGGGGSHH
T ss_pred HHHHHHCCCCC------CCCCC---cccccCCCccccCccccHHHHHHHHhHhh-------CCCCeEEEEEchhhhhhcH
Confidence 99999999865 35666 46788899999999999999999998876 5788999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEE
Q 013928 241 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTL 320 (434)
Q Consensus 241 ~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~l 320 (434)
++|+||+|+.|+||+||||+||+|+++++...+.+.+++.+++++|||++++|||+|+.+|++++++|++++|++++|+|
T Consensus 181 ~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~l 260 (368)
T 1w85_A 181 FYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTL 260 (368)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEE
T ss_pred HHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999999999999998877777789999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCC-CCC-CCCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCc
Q 013928 321 VECETYRFRGHS-LAD-PDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPR 398 (434)
Q Consensus 321 Iev~t~R~~gHs-~~D-~~~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~ 398 (434)
||++|||.+||+ ++| +..||+++|++.|+++|||.+|+++|+++|+++++++++|+++++++|++++++|+++|.|++
T Consensus 261 Ie~~t~r~~gHs~~~Ddp~~yr~~~e~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~ 340 (368)
T 1w85_A 261 IETLCFRYGPHTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKV 340 (368)
T ss_dssp EEEECCCSSCSCSSCC------CHHHHHHHHTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCCH
T ss_pred EEEEeeccCCCCCCCCCccccCCHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 999999999999 987 667999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcccCCCCC
Q 013928 399 SQLLENVFADPKG 411 (434)
Q Consensus 399 ~~l~~~vya~~~~ 411 (434)
+++|+|||+++++
T Consensus 341 ~~~~~~vy~~~~~ 353 (368)
T 1w85_A 341 TDLISIMFEELPF 353 (368)
T ss_dssp HHHHHTSCSSCCH
T ss_pred HHHHhhccCCCCh
Confidence 9999999997653
No 4
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=100.00 E-value=9.8e-68 Score=543.88 Aligned_cols=322 Identities=26% Similarity=0.421 Sum_probs=289.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHH
Q 013928 81 NLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPAR 160 (434)
Q Consensus 81 ~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~ 160 (434)
.+.+++++++++|+.|+++|.||+++.+++++|++ +|+|++.||||+++|++.+|+++|+|+++||+|++++++|+++.
T Consensus 49 ~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri-~~~~~~~GqEa~~vg~~~al~~~D~v~~~yR~~~~~~~~G~~~~ 127 (400)
T 2bfd_A 49 DPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI-SFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLE 127 (400)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ceeecCCChHHHHHHHHHhcCCCCEEEecCcCHHHHHHcCCCHH
Confidence 36799999999999999999999999999999998 48999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccch
Q 013928 161 AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQ 240 (434)
Q Consensus 161 ~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~ 240 (434)
++|.+++|+.+++++|+++++|++..+.++.+.+|+||+++|+|+|+|+|.+++ +.+++|||++|||++++|.
T Consensus 128 ~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~AvG~AlA~~~~-------~~~~~vv~~~GDGa~~~G~ 200 (400)
T 2bfd_A 128 LFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRA-------NANRVVICYFGEGAASEGD 200 (400)
T ss_dssp HHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHHHH-------TCCCCEEEEEETTGGGSHH
T ss_pred HHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccccccccHHHHHHHhhhhh-------CCCCeEEEEECchhhhcCh
Confidence 999999999999889999999999888888889999999999999999999887 5688999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEE
Q 013928 241 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTL 320 (434)
Q Consensus 241 ~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~l 320 (434)
|||+||+|+.|+||+||||+||+|+++++...+.+.+++++++++|||++++|||+|+++|++++++|++++|.+++|+|
T Consensus 201 ~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~l 280 (400)
T 2bfd_A 201 AHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFL 280 (400)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 99999999999999999999999999998877777789999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCC-CCCCCHHHHHHHhcC-ChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCc
Q 013928 321 VECETYRFRGHSLADP-DELRDPAEKARYAAR-DPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPR 398 (434)
Q Consensus 321 Iev~t~R~~gHs~~D~-~~yR~~~e~~~~~~~-DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~ 398 (434)
||++|||..||+++|+ ..||+++|++.|+++ |||.+|+++|++.|+++++++++|+++++++|++++++|++.|.|+.
T Consensus 281 Ie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~ 360 (400)
T 2bfd_A 281 IEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNP 360 (400)
T ss_dssp EEEECCCCC--CC-------------------CCHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCBCCG
T ss_pred EEEEeeeeCCCCCCCCCccCCCHHHHHHHHhcCCHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 9999999999999986 569999999999987 79999999999999999999999999999999999999999999999
Q ss_pred chhhhcccCCCC
Q 013928 399 SQLLENVFADPK 410 (434)
Q Consensus 399 ~~l~~~vya~~~ 410 (434)
+++|++||++++
T Consensus 361 ~~~~~~vy~~~~ 372 (400)
T 2bfd_A 361 NLLFSDVYQEMP 372 (400)
T ss_dssp GGGSTTSSSSCC
T ss_pred HHHHHHhhccCC
Confidence 999999999764
No 5
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=100.00 E-value=2.8e-65 Score=520.62 Aligned_cols=323 Identities=33% Similarity=0.531 Sum_probs=308.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCC-CEEEccCcchHHHHHcCCCH
Q 013928 81 NLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE-DSVVSTYRDHVHALSKGVPA 159 (434)
Q Consensus 81 ~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~-D~v~~~yR~~~~~La~G~~~ 159 (434)
.+.+++++++++|+.|+++|.||+++..++++|++ |++|++.|||++++++..+|+++ |+++++||+|++.+.+|+++
T Consensus 30 ~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~-g~~~~~~G~ea~~~~~~~~l~~~rD~i~~s~r~~~~~~~~G~~~ 108 (367)
T 1umd_A 30 PLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPL 108 (367)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-SCCCCCTTCHHHHHHHHHHSCTTTSEEECCTTTHHHHHHHTCCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc-cCCCCCcCHHHHHHHHHHHcCCCCcEEEeCcHHHHHHHHcCCCH
Confidence 35689999999999999999999999999999998 89999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccc
Q 013928 160 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG 239 (434)
Q Consensus 160 ~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G 239 (434)
.++|.+++++.++++.|.++++|+++++.++.+.+|++|.++|.|+|+|+|.|+. +++++|||++|||++++|
T Consensus 109 ~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~-------~~~~~vv~i~GDGa~~~G 181 (367)
T 1umd_A 109 KELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLL-------RTGQVAVCTFGDGATSEG 181 (367)
T ss_dssp HHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHT-------TCCCCEEEEEETGGGGSH
T ss_pred HHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHh-------CCCCeEEEEEcccccccC
Confidence 9999999999999988888999998888888889999999999999999999876 578899999999999999
Q ss_pred hHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCE
Q 013928 240 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT 319 (434)
Q Consensus 240 ~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~ 319 (434)
.++|+|++|+.|++|+||||+||+|+++++.....+.+++.+++++||+++++|||+|+.+|++++++|+++++.+++|+
T Consensus 182 ~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~ 261 (367)
T 1umd_A 182 DWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPS 261 (367)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCE
T ss_pred cHHHHHHHHHHhCcCEEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999998876666778999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCCC-CCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCc
Q 013928 320 LVECETYRFRGHSLADP-DELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPR 398 (434)
Q Consensus 320 lIev~t~R~~gHs~~D~-~~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~ 398 (434)
|||++|||..||+++|+ ..||+++|++.|+++||+.+|+++|+++|+++++++++|+++++++|++++++|+++|.|++
T Consensus 262 lIe~~t~r~~Ghs~~D~~~~Yr~~~e~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~ 341 (367)
T 1umd_A 262 LVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPP 341 (367)
T ss_dssp EEEEECCCCSCSSTTCCGGGTSCHHHHHHHHTTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCBCCG
T ss_pred EEEEEeecCCCCCCCCCccccCCHHHHHHHHcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 99999999999999985 67999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcccCCCCC
Q 013928 399 SQLLENVFADPKG 411 (434)
Q Consensus 399 ~~l~~~vya~~~~ 411 (434)
+++|+|||+++++
T Consensus 342 ~~~~~~vy~~~~~ 354 (367)
T 1umd_A 342 EWMFEDVFAEKPW 354 (367)
T ss_dssp GGGGTTSSSSCCH
T ss_pred HHHHhhhcCCCCh
Confidence 9999999998654
No 6
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=5.8e-58 Score=507.89 Aligned_cols=322 Identities=20% Similarity=0.218 Sum_probs=281.2
Q ss_pred hhHHHHHHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC------C
Q 013928 65 VAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK------K 138 (434)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~------~ 138 (434)
...+.|++++++... +.+++|+++++|+.|+++|.||+++.++|++||++|+ .||||+++|++.+|+ +
T Consensus 98 ~~~~~w~~~~~e~~~--~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~g~----~G~Ea~~~g~~~~l~~~~~l~~ 171 (868)
T 2yic_A 98 PEQQRWIQERVETKH--DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSL----EGAETVIPMMDAVIDQCAEHGL 171 (868)
T ss_dssp HHHHHHHHHHHSSCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCC----TTCTTHHHHHHHHHHHHHHTTC
T ss_pred hHHhHHHHHHhccCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC----CChHHHHHHHHHHHHHhhhCCC
Confidence 345679999999754 7899999999999999999999999999999999886 999999999997754 7
Q ss_pred CCEEEc-cCcchHHHHH--cCCCHHHHHHHHhcCCCCC-ccC-CCCCcccccCC------------CcccCCcccccccc
Q 013928 139 EDSVVS-TYRDHVHALS--KGVPARAVMSELFGKATGC-CRG-QGGSMHMFSKE------------HNLLGGFAFIGEGI 201 (434)
Q Consensus 139 ~D~v~~-~yR~~~~~La--~G~~~~~i~~el~g~~~g~-~~G-~ggs~h~~~~~------------~~~~~~~g~lG~gl 201 (434)
+|++++ +||||+++|+ +|+++.++|+|++|+.+++ +.| .+.++|++... .++.+++++||+++
T Consensus 172 ~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~ 251 (868)
T 2yic_A 172 DEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVD 251 (868)
T ss_dssp SEEEEECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTH
T ss_pred CCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccc
Confidence 999998 8999999999 9999999999999998876 444 33378876432 34566789999999
Q ss_pred hhhHHHHHHHHHHHhhhhh---cCCCceEEEEeCcccc-ccchHHHHHHHHHHcCCC---eEEEEEcCCccCcccccccc
Q 013928 202 PVATGAAFTSKYRREVLKE---ADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRAT 274 (434)
Q Consensus 202 p~AvGaA~A~k~~~~~~~~---~~~d~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vI~VV~NN~y~is~~~~~~~ 274 (434)
|+|+|+|+|.|+++..... ...+.+|||++|||++ ++|.|||+||+|+.|+|| +||||+||+|+++++...++
T Consensus 252 P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~st~~~~~~ 331 (868)
T 2yic_A 252 PVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSR 331 (868)
T ss_dssp HHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHC
T ss_pred cHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcccccCccccc
Confidence 9999999999987421100 0156799999999996 899999999999999999 99999999999999866566
Q ss_pred cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhc-CCh
Q 013928 275 SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAA-RDP 353 (434)
Q Consensus 275 ~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~~~~~-~DP 353 (434)
+.+++.+++++|||++++|||+|+++|++++++|++++|++++|+|||++|||++||+++|++.||.+.|++.|++ +||
T Consensus 332 s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p~~~~p~~~~~~~~~~dP 411 (868)
T 2yic_A 332 SSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGS 411 (868)
T ss_dssp SSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCH
T ss_pred cccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCcccccccCChHHHHHHHhCCCH
Confidence 6678899999999999999999999999999999999999999999999999999999999999999999999875 699
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 013928 354 ITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADE 392 (434)
Q Consensus 354 l~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~ 392 (434)
+.+|+++|+++|+++++++++++++++++|++++++|++
T Consensus 412 i~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~ 450 (868)
T 2yic_A 412 RKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRE 450 (868)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887
No 7
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=7.1e-57 Score=509.98 Aligned_cols=321 Identities=20% Similarity=0.219 Sum_probs=279.6
Q ss_pred hHHHHHHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhc------CCC
Q 013928 66 AVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLL------KKE 139 (434)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L------~~~ 139 (434)
..+.|++++++... +.+++|+++++|+.|+++|.||+++.++|++||++|+ .||||+++|++.+| +++
T Consensus 344 ~~~~w~~~~~e~~~--~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~----~GqEa~~~g~~~~l~~~~~l~~~ 417 (1113)
T 2xt6_A 344 EQQRWIQERVETKH--DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSL----EGAETVIPMMDAVIDQCAEHGLD 417 (1113)
T ss_dssp HHHHHHHHHHHSCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCC----TTCTTHHHHHHHHHHHHHHTTCS
T ss_pred HHhHHHHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC----CChHHHHHHHHHHHHHhhhCCCC
Confidence 45679999999754 7899999999999999999999999999999999886 99999999998875 479
Q ss_pred CEEEc-cCcchHHHHH--cCCCHHHHHHHHhcCCCCC-ccC-CCCCcccccCC------------CcccCCcccccccch
Q 013928 140 DSVVS-TYRDHVHALS--KGVPARAVMSELFGKATGC-CRG-QGGSMHMFSKE------------HNLLGGFAFIGEGIP 202 (434)
Q Consensus 140 D~v~~-~yR~~~~~La--~G~~~~~i~~el~g~~~g~-~~G-~ggs~h~~~~~------------~~~~~~~g~lG~glp 202 (434)
|++++ +||||+++|+ +|+++.++|+|++|+.+++ +.| .+.++|++... .++.+++|+||+++|
T Consensus 418 D~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p 497 (1113)
T 2xt6_A 418 EVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDP 497 (1113)
T ss_dssp EEEEECCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHH
T ss_pred CEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCcccccccc
Confidence 99998 8999999999 9999999999999998876 444 33378886432 345677899999999
Q ss_pred hhHHHHHHHHHHHhhhhh---cCCCceEEEEeCcccc-ccchHHHHHHHHHHcCCC---eEEEEEcCCccCccccccccc
Q 013928 203 VATGAAFTSKYRREVLKE---ADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATS 275 (434)
Q Consensus 203 ~AvGaA~A~k~~~~~~~~---~~~d~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vI~VV~NN~y~is~~~~~~~~ 275 (434)
+|+|+|+|.|+++...+. ...+.+|||++|||++ ++|.|||+||+|+.|+|| +||||+||+|+++++...+++
T Consensus 498 ~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~~~~~~s 577 (1113)
T 2xt6_A 498 VLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRS 577 (1113)
T ss_dssp HHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCS
T ss_pred HHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccccCcccccc
Confidence 999999999987421110 0156899999999996 899999999999999999 999999999999998665555
Q ss_pred CchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhc-CChH
Q 013928 276 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAA-RDPI 354 (434)
Q Consensus 276 ~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~~~~~-~DPl 354 (434)
.+++.+++++|||++++|||+|+++|++++++|++++|.+++|+|||++|||++||+++|++.||.+.|++.|++ +||+
T Consensus 578 ~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~~~~~~~~~~~~~~~dpi 657 (1113)
T 2xt6_A 578 SEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSR 657 (1113)
T ss_dssp SSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHH
T ss_pred ccCHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCccccCChHHHHHHHhcCCHH
Confidence 667889999999999999999999999999999999999999999999999999999999999999999998875 6999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 013928 355 TALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADE 392 (434)
Q Consensus 355 ~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~ 392 (434)
.+|+++|+++|+++++++++|+++++++|++++++|++
T Consensus 658 ~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~ 695 (1113)
T 2xt6_A 658 KAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRE 695 (1113)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987
No 8
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=3.7e-56 Score=496.05 Aligned_cols=320 Identities=17% Similarity=0.200 Sum_probs=262.2
Q ss_pred hhHHHHHHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC------C
Q 013928 65 VAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK------K 138 (434)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~------~ 138 (434)
...+.||+++++.. .+.+++|+++++|+.|+++|.||+++.++|++||++| ..|||++++|+..+++ .
T Consensus 178 ~~~~~w~~~~~e~~--~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~----~~G~Ea~i~g~~~~~~~a~~~g~ 251 (933)
T 2jgd_A 178 TEEKRWIQQRIESG--RATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFS----LEGGDALIPMLKEMIRHAGNSGT 251 (933)
T ss_dssp HHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCC----CTTCTTHHHHHHHHHHHHHTTTC
T ss_pred HHHhHHHHHHhhcc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----CCCchHHHHHHHHHHHHHhhCCC
Confidence 34566999999865 5679999999999999999999999999999999877 4899999999888876 5
Q ss_pred CCEEEc-cCcchHHHHH--cCCCHHHHHHHHhcCCCCCccCCCCCcccccCCC----------cccCCcccccccchhhH
Q 013928 139 EDSVVS-TYRDHVHALS--KGVPARAVMSELFGKATGCCRGQGGSMHMFSKEH----------NLLGGFAFIGEGIPVAT 205 (434)
Q Consensus 139 ~D~v~~-~yR~~~~~La--~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~----------~~~~~~g~lG~glp~Av 205 (434)
+|+|++ +||||+++|+ +|+++.++|+|++|+.++.+.+.+.++|++.... ++..+.+++|+++|+|+
T Consensus 252 ~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~ 331 (933)
T 2jgd_A 252 REVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVI 331 (933)
T ss_dssp CEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHH
T ss_pred CCEEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccccCHHH
Confidence 999996 8999999999 9999999999999998887655556889875432 23467899999999999
Q ss_pred HHHHHHHHHHhhhhhcCCCceEEEEeCcccc-ccchHHHHHHHHHHcCCC---eEEEEEcCCccCcc-cccccccCchhh
Q 013928 206 GAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGM-SHLRATSDPQIY 280 (434)
Q Consensus 206 GaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vI~VV~NN~y~is~-~~~~~~~~~d~~ 280 (434)
|+|+|.++++... .+.+.+|||++|||++ ++|.+||+||+|+.|++| +||||+||+|+|++ +...+...++++
T Consensus 332 G~A~A~~~~~~~~--~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~~~~~~~~ 409 (933)
T 2jgd_A 332 GSVRARLDRLDEP--SSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCT 409 (933)
T ss_dssp HHHHHHHTTSSSC--CGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------CGG
T ss_pred HHHHHHHhhcccc--CCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhcccchhHH
Confidence 9999988763100 1246789999999998 899999999999999999 99999999999999 877777778899
Q ss_pred hccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhc-CChHHHHHH
Q 013928 281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAA-RDPITALKK 359 (434)
Q Consensus 281 ~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~~~~~-~DPl~~~~~ 359 (434)
+++++|||++++|||+|+++|++++++|+++++.+++|+|||+.|||++||+++|++.||+++|++.|++ +||+.+|++
T Consensus 410 ~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~~yr~~~e~~~~~~~~dPi~~~~~ 489 (933)
T 2jgd_A 410 DIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYAD 489 (933)
T ss_dssp GGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-----------CCTTHHHHHTSCCHHHHHHH
T ss_pred HHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccchhhCCHHHHHHHHccCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 499999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 013928 360 YLIESSLASEAELKAIEKKIDEVVEDAVEFADE 392 (434)
Q Consensus 360 ~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~ 392 (434)
+|+++|++|++++++++++++++|+++++.|++
T Consensus 490 ~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~ 522 (933)
T 2jgd_A 490 KLEQEKVATLEDATEMVNLYRDALDAGDCVVAE 522 (933)
T ss_dssp HHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999887
No 9
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=99.97 E-value=8.1e-31 Score=283.33 Aligned_cols=234 Identities=18% Similarity=0.192 Sum_probs=176.4
Q ss_pred HHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEE--ccCc
Q 013928 71 VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVV--STYR 147 (434)
Q Consensus 71 ~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~-~~D~v~--~~yR 147 (434)
|+++|+.+.....++.++|.++++.| |.+.. ++. ++..|+++++.|+|++.+++...++ +.|+++ ..||
T Consensus 10 ~l~~i~~p~d~~~l~~~~l~~l~~~i---R~~~~---~~~--~~~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~ 81 (621)
T 2o1s_A 10 TLALVDSTQELRLLPKESLPKLCDEL---RRYLL---DSV--SRSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQ 81 (621)
T ss_dssp TGGGCSSHHHHTTSCGGGHHHHHHHH---HHHHH---HHS--CGGGCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTT
T ss_pred hhhhcCChHHhhhCCHHHHHHHHHHH---HHHHH---HHH--hhcCCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchH
Confidence 46888887777789999999999987 65543 322 2457999999999999999999999 899998 6899
Q ss_pred chHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccC---CCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCC
Q 013928 148 DHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSK---EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (434)
Q Consensus 148 ~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~---~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d 224 (434)
++++.+..|. .+++ ..+ +..+|.+++..+ +.. ...+|+||+++|+|+|+|+|.+++ +++
T Consensus 82 ~y~~~~l~G~-~~~~-~~~--------r~~~g~~g~~~~~~s~~~-~~~~G~~G~gl~~A~G~AlA~~~~-------~~~ 143 (621)
T 2o1s_A 82 AYPHKILTGR-RDKI-GTI--------RQKGGLHPFPWRGESEYD-VLSVGHSSTSISAGIGIAVAAEKE-------GKN 143 (621)
T ss_dssp CHHHHHTTTT-GGGG-GGT--------TSTTSCCSSCCTTTCTTC-CSCCSSSSCHHHHHHHHHHHHHHH-------TSC
T ss_pred HHHHHHHhCC-Hhhh-hcc--------cccCCCCCCCCCCCCCCC-ccCCcccchHHHHHHHHHHHHHHh-------CCC
Confidence 9999999887 2221 111 111221122111 223 334899999999999999999887 578
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccC----------------------------
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSD---------------------------- 276 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~---------------------------- 276 (434)
++|||++|||++++|+++|+|++|+.+++|+|+||+||+|+++.+...+...
T Consensus 144 ~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~ 223 (621)
T 2o1s_A 144 RRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIK 223 (621)
T ss_dssp CCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEEEEECC-----------------------------------------
T ss_pred CeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHH
Confidence 9999999999999999999999999999999999999999998765432100
Q ss_pred ------chh-------hhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928 277 ------PQI-------YKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 334 (434)
Q Consensus 277 ------~d~-------~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~ 334 (434)
.++ ..++++|||+++ +|||+|+.++.+++++|. +.++|+|||++|+|++||+..
T Consensus 224 ~~~~r~~~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~----~~~gP~lI~v~t~kg~G~~~~ 291 (621)
T 2o1s_A 224 ELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMR----DLKGPQFLHIMTKKGRGYEPA 291 (621)
T ss_dssp ---------------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHH----HSCSEEEEEEECCCTTCCCCC
T ss_pred HHHHHHHHHhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHH----HcCCCEEEEEEEecccCCChh
Confidence 011 467899999999 999999999998777654 458999999999999999865
No 10
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.96 E-value=3.8e-30 Score=278.46 Aligned_cols=234 Identities=17% Similarity=0.142 Sum_probs=182.3
Q ss_pred HHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEccCcch
Q 013928 71 VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVSTYRDH 149 (434)
Q Consensus 71 ~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~-~~D~v~~~yR~~ 149 (434)
++++|+.+.....++.+++.++|+.| |.+. .+++. +..|+++++.|+-.+..++...++ +.|+++.+ |||
T Consensus 12 ~l~~i~~p~d~~~l~~~~l~~l~~~i---R~~~---~~~~~--~~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~-~GH 82 (629)
T 2o1x_A 12 LLDQIHGPKDLKRLSREQLPALTEEL---RGEI---VRVCS--RGGLHLASSLGAVDIITALHYVLDSPRDRILFD-VGH 82 (629)
T ss_dssp TGGGCSSHHHHTTSCGGGHHHHHHHH---HHHH---HHHHT--TSSSCHHHHHHTHHHHHHHHHHSCTTTSEEEES-SST
T ss_pred hhhhCCChhhhhhCCHHHHHHHHHHH---HHHH---HHHHH--hcCCcCCCchhHHHHHHHHHhhcCCCCCeEEec-Cch
Confidence 46788877777789999999999998 5443 23333 257899999999777777766778 89999998 999
Q ss_pred H---HHHHcCC-CHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928 150 V---HALSKGV-PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (434)
Q Consensus 150 ~---~~La~G~-~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~ 225 (434)
+ +.+..|. +....++++.|. +|++.+. +++ +...++|+||+++|+|+|+|+|.+++ ++++
T Consensus 83 ~~y~~~~l~G~~~~~~~~r~~~g~-~G~p~~~-~s~-------~~~~~~G~~G~gl~~AvG~AlA~k~~-------~~~~ 146 (629)
T 2o1x_A 83 QAYAHKILTGRRDQMADIKKEGGI-SGFTKVS-ESE-------HDAITVGHASTSLTNALGMALARDAQ-------GKDF 146 (629)
T ss_dssp TCHHHHHTTTTGGGGGGTTSTTSC-CSSCCGG-GCT-------TCCSCCSSSSCHHHHHHHHHHHHHHH-------TCCC
T ss_pred HHHHHHHHhCcHhHHhCcccCCCC-CCCCCCC-CCC-------CCCcCCCcccccHhHHHHHHHHHHHh-------CCCC
Confidence 5 5666776 444446666553 3444322 122 23556899999999999999999887 6789
Q ss_pred eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccccc--------------------------C---
Q 013928 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS--------------------------D--- 276 (434)
Q Consensus 226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~--------------------------~--- 276 (434)
+|||++|||++++|+++|+|++|+.|++|+|+||+||+|+++.+...+.. .
T Consensus 147 ~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~ 226 (629)
T 2o1x_A 147 HVAAVIGDGSLTGGMALAALNTIGDMGRKMLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLA 226 (629)
T ss_dssp CEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEEEEECSBSSSBCCSSHHHHC----------------------------
T ss_pred eEEEEEchhhhhccHHHHHHHHHHhhCCCEEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHH
Confidence 99999999999999999999999999999999999999999876542100 0
Q ss_pred ------chh-------h--hccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCC
Q 013928 277 ------PQI-------Y--KKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL 333 (434)
Q Consensus 277 ------~d~-------~--~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~ 333 (434)
+++ . +++++|||+++ +|||+|+.++.+++++| ++.++|+||+++|++++||+.
T Consensus 227 ~~~~~~~d~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A----~~~~~P~lI~v~t~kg~G~~~ 295 (629)
T 2o1x_A 227 DFMSRAKNSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERL----VDLDGPTILHIVTTKGKGLSY 295 (629)
T ss_dssp -----------------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHH----TTSSSEEEEEEECCTTTTCHH
T ss_pred HHHHHHHHHHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHH----HhcCCCEEEEEEEecCCCCCh
Confidence 132 3 78999999999 99999999988866655 456899999999999999974
No 11
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=99.95 E-value=7.8e-27 Score=254.08 Aligned_cols=145 Identities=20% Similarity=0.212 Sum_probs=127.7
Q ss_pred CcccCCcccccccchhhHHHHHHHHHHHhhhhhc------CCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEE
Q 013928 188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA------DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVE 260 (434)
Q Consensus 188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~------~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~ 260 (434)
.++...+|+||+++|.|+|+|+|.|+++.+++.+ ..+++|||++|||++++|++||++++|+.|+|| +|+||+
T Consensus 126 pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d 205 (700)
T 3rim_A 126 PGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYD 205 (700)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEE
T ss_pred CCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEE
Confidence 3677788999999999999999999986555442 357899999999999999999999999999998 999999
Q ss_pred cCCccCcccccccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCC
Q 013928 261 NNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP 336 (434)
Q Consensus 261 NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~ 336 (434)
||+|+|+++.... ...++.+++++|||++++| ||+|+.++++++++|.+ ..++|+||+++|+|++||+..+.
T Consensus 206 ~N~~si~~~~~~~-~~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~---~~~~P~lI~~~T~kG~G~~~~e~ 278 (700)
T 3rim_A 206 RNQISIEDDTNIA-LCEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQA---VTDRPSFIALRTVIGYPAPNLMD 278 (700)
T ss_dssp ECSEETTEEGGGT-CCCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTT
T ss_pred CCCcccccchhhc-cchhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHH---cCCCCEEEEEEEEeeecCCccCC
Confidence 9999999887754 3678999999999999999 99999999997776643 36899999999999999997654
No 12
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=99.95 E-value=2.9e-27 Score=257.82 Aligned_cols=227 Identities=17% Similarity=0.138 Sum_probs=168.4
Q ss_pred ccccCCCChHHHHHHHHH--hcCC-------CCEEEc--cCcc---hHHHHHcCC--CHHHHHHHHhcCCCCCccCCCCC
Q 013928 117 GFVHLYNGQEAVSTGFIK--LLKK-------EDSVVS--TYRD---HVHALSKGV--PARAVMSELFGKATGCCRGQGGS 180 (434)
Q Consensus 117 G~~h~~~GqEa~~~g~~~--~L~~-------~D~v~~--~yR~---~~~~La~G~--~~~~i~~el~g~~~g~~~G~ggs 180 (434)
|+..++.|.--+.+++-. .+++ .|.++. .|-+ +++....|. +.+++ ..+... .+.+ +
T Consensus 29 GH~g~~l~~~~i~~~L~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~~~~~l-~~~r~~-g~~~-----~ 101 (680)
T 1gpu_A 29 GHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYDLSIEDL-KQFRQL-GSRT-----P 101 (680)
T ss_dssp SCCHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHTTCSCCHHHH-TTTTCT-TCSC-----C
T ss_pred CccCCchhHHHHHHHHHHhCCCCccCCCCCCCCEEEEecchHHHHHHHHHHHhCCCCCHHHH-Hhhccc-CCCC-----C
Confidence 454445666555555543 3333 465544 3444 334444565 45544 222211 1110 1
Q ss_pred cccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eE
Q 013928 181 MHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IV 256 (434)
Q Consensus 181 ~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI 256 (434)
.|......++...+|+||+++|+|+|+|+|.++++..++.++ .+++|||++|||++++|++||+|++|+.++|| +|
T Consensus 102 ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li 181 (680)
T 1gpu_A 102 GHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLI 181 (680)
T ss_dssp SSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEE
T ss_pred CCCCccCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEE
Confidence 233223457788899999999999999999998765443322 37899999999999999999999999999999 99
Q ss_pred EEEEcCCccCcccccccccCchhhhccccCCCcEE-EEeCC-CHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928 257 FVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGF-HVDGM-DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 334 (434)
Q Consensus 257 ~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~-~VdG~-D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~ 334 (434)
+||+||+|+++.+...+. .+++.+++++|||+++ +|||+ |+.++++++++|.+ ..++|+||+++|+|++||+..
T Consensus 182 ~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~ 257 (680)
T 1gpu_A 182 AIYDDNKITIDGATSISF-DEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTIGYGSLHA 257 (680)
T ss_dssp EEEEECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCTTTTSTTT
T ss_pred EEEECCCceEeccccccc-CccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH---CCCCCEEEEEEeecccccccC
Confidence 999999999998776543 5789999999999999 99999 99999998877654 367999999999999999977
Q ss_pred CC----CCCCCHHHHHHHhcCChH
Q 013928 335 DP----DELRDPAEKARYAARDPI 354 (434)
Q Consensus 335 D~----~~yR~~~e~~~~~~~DPl 354 (434)
|+ ..||+++|+++|++++++
T Consensus 258 ~~~~~H~~~~~~ee~~~~~~~~~~ 281 (680)
T 1gpu_A 258 GSHSVHGAPLKADDVKQLKSKFGF 281 (680)
T ss_dssp TSGGGSSSCCCHHHHHHHHHHTTC
T ss_pred CCCccCCCCCCHHHHHHHHHHcCC
Confidence 75 579999999998765543
No 13
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=99.95 E-value=3.7e-28 Score=263.72 Aligned_cols=163 Identities=20% Similarity=0.205 Sum_probs=140.9
Q ss_pred CcccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928 188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL 263 (434)
Q Consensus 188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~ 263 (434)
.++...+|+||+++|+|+|+|+|.++++.+++..+ ++++|||++|||++++|+++|+|++|+.++|| +|+||+||+
T Consensus 111 ~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~ 190 (651)
T 2e6k_A 111 PGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNR 190 (651)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECC
T ss_pred CCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCC
Confidence 36777899999999999999999998865544322 57899999999999999999999999999999 999999999
Q ss_pred ccCcccccccccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCC---
Q 013928 264 WAIGMSHLRATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDEL--- 339 (434)
Q Consensus 264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~y--- 339 (434)
|+++.+..... .+++.+++++|||+++ +|||+|+.++++++++|.+ .++|+||+++|+|++||+..|+..|
T Consensus 191 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~----~~~P~lI~~~t~kg~G~~~~~~~~~H~~ 265 (651)
T 2e6k_A 191 ISIDGPTDLAF-TEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKL----DERPTLIAVRSHIGFGSPKQDSAKAHGE 265 (651)
T ss_dssp EETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH----SSSCEEEEEECCTTTTSTTTTSGGGTSS
T ss_pred ccccccccccc-CccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH----CCCCEEEEEEeEeccccccccccccccc
Confidence 99998876654 6789999999999999 9999999999998877653 6799999999999999996666555
Q ss_pred -CCHHHHHHHhcCChHH
Q 013928 340 -RDPAEKARYAARDPIT 355 (434)
Q Consensus 340 -R~~~e~~~~~~~DPl~ 355 (434)
++++|+++|++++|+.
T Consensus 266 ~~~~~e~~~~~~~~~~~ 282 (651)
T 2e6k_A 266 PLGPEAVEATRRNLGWP 282 (651)
T ss_dssp CCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 5678888888776653
No 14
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.94 E-value=4.2e-26 Score=248.36 Aligned_cols=159 Identities=22% Similarity=0.222 Sum_probs=137.5
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCc
Q 013928 189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW 264 (434)
Q Consensus 189 ~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y 264 (434)
++...+|+||+++|.|+|+|+|.++++.+++.++ .+++|||++|||++++|++||+|++|+.++|| +|+||+||+|
T Consensus 110 gv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~ 189 (673)
T 1r9j_A 110 GVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYI 189 (673)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSB
T ss_pred CeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCC
Confidence 6677899999999999999999998876554433 58899999999999999999999999999999 9999999999
Q ss_pred cCcccccccccCchhhhccccCCCcEE-EEeC-CCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCC----CC
Q 013928 265 AIGMSHLRATSDPQIYKKGPAFGMPGF-HVDG-MDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP----DE 338 (434)
Q Consensus 265 ~is~~~~~~~~~~d~~~~a~a~Gi~~~-~VdG-~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~----~~ 338 (434)
+++.+...+. ..++.+++++|||+++ +||| +|+.++++++++|.+ ..++|+||+++|+|++||+..|. ..
T Consensus 190 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H~~ 265 (673)
T 1r9j_A 190 SIDGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA---TKGKPKMIVQTTTIGFGSSKQGTEKVHGA 265 (673)
T ss_dssp CSSSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTSTTTTSGGGTSS
T ss_pred ccccchhhcc-CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHH---cCCCCEEEEEecccccccccCCCcccccC
Confidence 9998877665 6789999999999999 9999 999999998877653 36899999999999999995554 23
Q ss_pred CCCHHHHHHHhcC
Q 013928 339 LRDPAEKARYAAR 351 (434)
Q Consensus 339 yR~~~e~~~~~~~ 351 (434)
+++++|++.++++
T Consensus 266 ~~~~ee~~~~~~~ 278 (673)
T 1r9j_A 266 PLGEEDIANIKAK 278 (673)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 5778888777543
No 15
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=99.94 E-value=7e-27 Score=254.46 Aligned_cols=160 Identities=24% Similarity=0.256 Sum_probs=138.0
Q ss_pred CcccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928 188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL 263 (434)
Q Consensus 188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~ 263 (434)
.++...+|+||+++|+|+|+|+|.++++.+++..+ .+++|||++|||++++|+++|+|++|+.++|| +|+||+||+
T Consensus 107 ~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~ 186 (669)
T 2r8o_A 107 AGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNG 186 (669)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred CCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCC
Confidence 46778899999999999999999988765443322 37899999999999999999999999999999 999999999
Q ss_pred ccCcccccccccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCC-CCC----C
Q 013928 264 WAIGMSHLRATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL-ADP----D 337 (434)
Q Consensus 264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~-~D~----~ 337 (434)
|+|+.+...+. .+++.+++++|||+++ +|||+|+.++++++++|.+ ..++|+||+++|+|+.||+. .++ .
T Consensus 187 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~ 262 (669)
T 2r8o_A 187 ISIDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGTHDSHG 262 (669)
T ss_dssp EETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGTS
T ss_pred cEecccccccc-CccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeEeccCcCCcCCCCcccC
Confidence 99998766543 5789999999999999 9999999999998877653 36799999999999999995 443 4
Q ss_pred CCCCHHHHHHHhcC
Q 013928 338 ELRDPAEKARYAAR 351 (434)
Q Consensus 338 ~yR~~~e~~~~~~~ 351 (434)
.|++++|++.|+++
T Consensus 263 ~~~~~ee~~~~~~~ 276 (669)
T 2r8o_A 263 APLGDAEIALTREQ 276 (669)
T ss_dssp SCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999888654
No 16
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=99.94 E-value=7.1e-26 Score=244.52 Aligned_cols=205 Identities=20% Similarity=0.238 Sum_probs=154.2
Q ss_pred ccccCCCChHHHHHHHHHhcC---------CCCEEEc--cCcc---hHHHHHcCC--CHHHHH--HHHhcCCCCCccCCC
Q 013928 117 GFVHLYNGQEAVSTGFIKLLK---------KEDSVVS--TYRD---HVHALSKGV--PARAVM--SELFGKATGCCRGQG 178 (434)
Q Consensus 117 G~~h~~~GqEa~~~g~~~~L~---------~~D~v~~--~yR~---~~~~La~G~--~~~~i~--~el~g~~~g~~~G~g 178 (434)
|+...+.|.--+.+++...|+ +.|.++. .|-+ +++.+..|. +.+++. +++.++.++
T Consensus 27 GH~g~~lg~~ei~~~L~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~l~~~r~~~s~~~g------ 100 (632)
T 3l84_A 27 GHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPG------ 100 (632)
T ss_dssp SCCHHHHHHHHHHHHHTTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHTCSCCHHHHTTTTCTTCSSCS------
T ss_pred CCCCcChhHHHHHHHHHHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhCCCCCHHHHHHHhcCCCCCCC------
Confidence 444445666666666666665 3676655 4555 444444564 455542 222222222
Q ss_pred CCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEE
Q 013928 179 GSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVF 257 (434)
Q Consensus 179 gs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~ 257 (434)
|.-....++...+|+||+++|+|+|+|+|.++++.+++....+++|||++|||++++|+++|+|++|+.++|| +|+
T Consensus 101 ---hp~~~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~liv 177 (632)
T 3l84_A 101 ---HPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFIL 177 (632)
T ss_dssp ---SCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEE
T ss_pred ---CCCCCCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEE
Confidence 2111234677788999999999999999999886544433458899999999999999999999999999998 999
Q ss_pred EEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCC
Q 013928 258 VVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 335 (434)
Q Consensus 258 VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D 335 (434)
|++||+|+++.+.... ..+++.+++++|||++++|||+|+.++.+++++| ++.++|+||+++|+|++||+..+
T Consensus 178 i~nnN~~~i~~~~~~~-~~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A----~~~~~P~lI~v~T~kG~G~~~~e 250 (632)
T 3l84_A 178 IYDSNNISIEGDVGLA-FNENVKMRFEAQGFEVLSINGHDYEEINKALEQA----KKSTKPCLIIAKTTIAKGAGELE 250 (632)
T ss_dssp EEEECSEETTEEGGGT-CCCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHH----HTCSSCEEEEEECCTTTTCGGGT
T ss_pred EEECCCcccccchhhh-cChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHH----HhCCCCEEEEEeeEeeecCCCCC
Confidence 9999999998876554 3678999999999999999999999998866654 55789999999999999998653
No 17
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.94 E-value=4.8e-26 Score=248.01 Aligned_cols=159 Identities=22% Similarity=0.227 Sum_probs=133.5
Q ss_pred CcccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928 188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL 263 (434)
Q Consensus 188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~ 263 (434)
.++...+|+||+++|+|+|+|+|.++++.+++.++ ++++|||++|||++++|++||+|++|+.++|| +|+||+||+
T Consensus 120 ~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~ 199 (675)
T 1itz_A 120 PGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNH 199 (675)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred CCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCC
Confidence 36677889999999999999999998865554322 68899999999999999999999999999995 999999999
Q ss_pred ccCcccccccccCchhhhccccCCCcEE-EEeCC-CHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC-CCCC--
Q 013928 264 WAIGMSHLRATSDPQIYKKGPAFGMPGF-HVDGM-DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-DPDE-- 338 (434)
Q Consensus 264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~-~VdG~-D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~-D~~~-- 338 (434)
|+|+.+..... .+++.+++++|||+++ +|||+ |+.++++++++|.+ ..++|+||+++|+|++||+.. ++..
T Consensus 200 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H 275 (675)
T 1itz_A 200 ISIDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIKVTTTIGFGSPNKANSYSVH 275 (675)
T ss_dssp EETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGT
T ss_pred ccCCCChhhhc-ChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHH---CCCCeEEEEEeeecccCcccccCccccc
Confidence 99988776544 6889999999999999 99999 99999987776643 257999999999999999965 3332
Q ss_pred --CCCHHHHHHHhc
Q 013928 339 --LRDPAEKARYAA 350 (434)
Q Consensus 339 --yR~~~e~~~~~~ 350 (434)
..++++++.+++
T Consensus 276 ~~~~~~e~~~~~~~ 289 (675)
T 1itz_A 276 GSALGAKEVEATRQ 289 (675)
T ss_dssp SSCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 356666665543
No 18
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.94 E-value=5.4e-26 Score=247.46 Aligned_cols=143 Identities=24% Similarity=0.296 Sum_probs=122.7
Q ss_pred CcccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928 188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL 263 (434)
Q Consensus 188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~ 263 (434)
.++...+|+||+++|+|+|+|+|.++++.+++..+ .+++|||++|||++++|+++|+|++|+.++|| +|+|++||+
T Consensus 133 pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~ 212 (690)
T 3m49_A 133 AGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSND 212 (690)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred CccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCC
Confidence 35666789999999999999999998765443221 37899999999999999999999999999998 899999999
Q ss_pred ccCcccccccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHc-cCCCEEEEEEEecCCCCCCCC
Q 013928 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSLAD 335 (434)
Q Consensus 264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~-~~gP~lIev~t~R~~gHs~~D 335 (434)
|+++.+.... ..+++.+++++|||++++| ||+|+.++.+++++ +++ .++|+||+++|+|++|++..+
T Consensus 213 ~~i~~~~~~~-~~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~----a~~~~~~P~lI~v~T~kG~G~~~~~ 281 (690)
T 3m49_A 213 ISLDGDLNRS-FSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEE----AKADEKRPTLIEVRTTIGFGSPNKS 281 (690)
T ss_dssp BCSSSBGGGT-CCCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHH----HHHCCSSCEEEEEECCTTTTCTTTT
T ss_pred eecccchhhc-cchhHHHHHHHcCCcEEEEecCCCHHHHHHHHHH----HHhcCCCCEEEEEEeecccccCccc
Confidence 9999877543 4578999999999999999 99999999886554 455 689999999999999998553
No 19
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=99.93 E-value=1e-25 Score=245.84 Aligned_cols=148 Identities=23% Similarity=0.317 Sum_probs=115.6
Q ss_pred CcccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928 188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL 263 (434)
Q Consensus 188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~ 263 (434)
.++...+|+||+++|+|+|+|+|.++++.++++++ .+++|||++|||++++|+++|+|++|+.++|| +|+|++||+
T Consensus 148 ~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~ 227 (711)
T 3uk1_A 148 PGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNG 227 (711)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred CCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCC
Confidence 36667889999999999999999998865443222 27899999999999999999999999999999 999999999
Q ss_pred ccCcccccccccCchhhhccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC-CCCCCC
Q 013928 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-DPDELR 340 (434)
Q Consensus 264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~~-VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~-D~~~yR 340 (434)
|+++.+...+ ..+|+.+++++|||++++ |||+|+.++.+++++| ++.++|+||+++|+|++||+.. ++..|.
T Consensus 228 ~~i~~~~~~~-~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A----~~~~~P~lI~v~T~kG~G~~~~e~~~~~H 301 (711)
T 3uk1_A 228 ISIDGDVVNW-FHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKA----KRSDKPSLICCKTRIGNGAATKAGGHDVH 301 (711)
T ss_dssp EETTEEGGGT-CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHH----TTCSSCEEEEEEC----------------
T ss_pred cccccchhhh-cCCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH----HhCCCCEEEEEccccccCCCCCCCccccc
Confidence 9998877655 367899999999999998 9999999998866654 5578999999999999999864 444443
No 20
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=99.93 E-value=5.6e-25 Score=237.34 Aligned_cols=136 Identities=24% Similarity=0.329 Sum_probs=118.9
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCc
Q 013928 189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIG 267 (434)
Q Consensus 189 ~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is 267 (434)
++...+|+||+++|+|+|+|+|.++.+ ..+++|||++|||++++|++||+|++|+.|+|| +|+|++||+|+++
T Consensus 115 ~~d~~~G~lG~gl~~A~G~AlA~~~~~------~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~ 188 (616)
T 3mos_A 115 FTDVATGSLGQGLGAACGMAYTGKYFD------KASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQS 188 (616)
T ss_dssp TCSSCCCSTTCHHHHHHHHHHHHHHTS------CCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSS
T ss_pred cccccccccCCccHHHHHHHHHHHHhC------CCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCc
Confidence 455578999999999999999987652 346899999999999999999999999999998 7888999999999
Q ss_pred ccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCC
Q 013928 268 MSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP 336 (434)
Q Consensus 268 ~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~ 336 (434)
.+.......+++.+++++|||++++|||+|+.++.++++++ .++|+||+++|+|++||+..++
T Consensus 189 ~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~------~~~P~lI~v~T~kg~G~~~~e~ 251 (616)
T 3mos_A 189 DPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA------KHQPTAIIAKTFKGRGITGVED 251 (616)
T ss_dssp SBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC------CSSCEEEEEECCTTTTSTTTTT
T ss_pred CCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc------CCCCEEEEEEEecccccccccC
Confidence 87766655678999999999999999999999998876432 5799999999999999987643
No 21
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=99.92 E-value=7.8e-25 Score=237.66 Aligned_cols=143 Identities=24% Similarity=0.300 Sum_probs=118.9
Q ss_pred CcccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928 188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL 263 (434)
Q Consensus 188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~ 263 (434)
.++...+|+||+++|+|+|+|+|.++++..++.++ .+++|||++|||++++|+++|+|++|++++|| +|+|++||+
T Consensus 109 ~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~ 188 (663)
T 3kom_A 109 PGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNN 188 (663)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC
T ss_pred CCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCC
Confidence 35667889999999999999999998765433211 27899999999999999999999999999999 899999999
Q ss_pred ccCcccccccccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHc-cCCCEEEEEEEecCCCCCCCC
Q 013928 264 WAIGMSHLRATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSLAD 335 (434)
Q Consensus 264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~-~~gP~lIev~t~R~~gHs~~D 335 (434)
|+++.+.... ..+++.+++++|||+++ +|||+|+.++.+++++| ++ .++|+||+++|+|++||+..+
T Consensus 189 ~~i~~~~~~~-~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A----~~~~~~P~lI~~~T~kg~G~~~~e 257 (663)
T 3kom_A 189 ISIDGDTKGW-FSDNTPERFRAYGWHVIENVDGHDFVAIEKAINEA----HSQQQKPTLICCKTVIGFGSPEKA 257 (663)
T ss_dssp -----CGGGT-CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHH----HHCSSSCEEEEEECCTTTTCTTTT
T ss_pred cccccchhhh-cchhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHH----HhcCCCCEEEEEecccccccCCCC
Confidence 9998876654 36789999999999999 99999999998866654 45 689999999999999998764
No 22
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=99.91 E-value=1.4e-23 Score=233.36 Aligned_cols=275 Identities=16% Similarity=0.049 Sum_probs=182.4
Q ss_pred HHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHH-HHHhcC------CCCEEEc
Q 013928 72 KEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTG-FIKLLK------KEDSVVS 144 (434)
Q Consensus 72 ~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g-~~~~L~------~~D~v~~ 144 (434)
.|.|..+.........++.+-+..-+|...++.-.......+++.|+..++.|.--+..+ ....|+ ++|+|+.
T Consensus 60 l~~i~~~~~~~~p~d~~l~~~la~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~ael~~~l~~~~~~~~~~~~~~D~V~~ 139 (886)
T 2qtc_A 60 INTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYF 139 (886)
T ss_dssp SCSSCGGGCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCCCEEEC
T ss_pred hhhCCCccccCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCcCCcHHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Confidence 466655555455555566534444444444443222111334555665555665444333 345477 4787777
Q ss_pred -cCcc---hHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhh
Q 013928 145 -TYRD---HVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKE 220 (434)
Q Consensus 145 -~yR~---~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~ 220 (434)
.|-+ +++.+..|.-..+-|..+..-..+ .|..+..|....+.+....+|+||.+++.|+|+|++.++...+...
T Consensus 140 ~GH~sp~~Ya~~~l~Gr~~~e~l~~fRq~~~~--~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~ 217 (886)
T 2qtc_A 140 QGHISPGVYARAFLEGRLTQEQLDNFRQEVHG--NGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLK 217 (886)
T ss_dssp CGGGHHHHHHHHHHTTSSCHHHHTTBTCCTTS--SCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cchhHHHHHHHHHHhCCCCHHHHHhccCCCCC--CCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccccc
Confidence 4555 445566776433444444432111 1223322222112235567899999999999999999985332222
Q ss_pred cCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCcccccccc-cCchhhhccccCCCcEEEE-----
Q 013928 221 ADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHV----- 293 (434)
Q Consensus 221 ~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~~-~~~d~~~~a~a~Gi~~~~V----- 293 (434)
.+.+++|||++|||++++|++||+||+|+.++|+ +||||+||+|+|+.+..... ...++.++++++||++++|
T Consensus 218 ~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~ 297 (886)
T 2qtc_A 218 DTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSR 297 (886)
T ss_dssp CCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCTT
T ss_pred cCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEEEEecchh
Confidence 3578899999999999999999999999999997 99999999999998876532 3468999999999999998
Q ss_pred ----------------------------------------------------------------eCCCHHHHHHHHHHHH
Q 013928 294 ----------------------------------------------------------------DGMDVLKVREVAKEAI 309 (434)
Q Consensus 294 ----------------------------------------------------------------dG~D~~av~~a~~~Al 309 (434)
||+|+.+|++++++|.
T Consensus 298 ~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~ 377 (886)
T 2qtc_A 298 WDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQ 377 (886)
T ss_dssp HHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHH
T ss_pred HHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHH
Confidence 6999999999888776
Q ss_pred HHHHccCCCEEEEEEEecCCCCCCC--CCC-----CCCCHHHHHHHhcC
Q 013928 310 ERARRGEGPTLVECETYRFRGHSLA--DPD-----ELRDPAEKARYAAR 351 (434)
Q Consensus 310 ~~ar~~~gP~lIev~t~R~~gHs~~--D~~-----~yR~~~e~~~~~~~ 351 (434)
+. .++|+||+++|+|++||+.. ++. .|++.++++.|+.+
T Consensus 378 ~~---~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~ 423 (886)
T 2qtc_A 378 ET---KGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRDR 423 (886)
T ss_dssp HC---CSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHHH
T ss_pred Hc---CCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHHHH
Confidence 42 35899999999999999742 322 26677777776654
No 23
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.88 E-value=6.6e-23 Score=220.61 Aligned_cols=164 Identities=19% Similarity=0.206 Sum_probs=124.6
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcc-
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGM- 268 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~- 268 (434)
.++.++||+++|.|+|++++ .++++|||++|||+++++ +++|++|.++++|+++||.||+ |++..
T Consensus 416 ~~~~g~~G~~l~~A~Gaala-----------~~~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~~ 482 (603)
T 4feg_A 416 SNLFATMGVGIPGAIAAKLN-----------YPERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIKD 482 (603)
T ss_dssp CCSSCCTTCHHHHHHHHHHH-----------CTTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHH
T ss_pred CcccccccchhHHHhhHHHh-----------CCCCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHHH
Confidence 44679999999999999999 678899999999999997 8889999999999888887775 76521
Q ss_pred ---------cccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe---cCCCCCCCC-
Q 013928 269 ---------SHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY---RFRGHSLAD- 335 (434)
Q Consensus 269 ---------~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~---R~~gHs~~D- 335 (434)
........+|+.+++++||+++++|++. .++.+++++|++ .+.+||+|||+.|+ |..+|...|
T Consensus 483 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~--~~l~~al~~a~~--~~~~gP~lIev~~~~~~~~~~~~~~~~ 558 (603)
T 4feg_A 483 EQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVNKI--EQLPDVFEQAKA--IAQHEPVLIDAVITGDRPLPAEKLRLD 558 (603)
T ss_dssp HHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEECBG--GGHHHHHHHHHH--HTTTSCEEEEEECCCCCCCCTTSCCCC
T ss_pred HHHHhcCCCcccCcCCCCCHHHHHHHCCCeEEEECCH--HHHHHHHHHHHH--hcCCCcEEEEEEeCCCCCCCcccchhh
Confidence 1111224578999999999999999855 466665554431 16789999999994 445676665
Q ss_pred CCCCCCHH--HHHHHhcCChHHHHHHHHHHcCCCCHHH
Q 013928 336 PDELRDPA--EKARYAARDPITALKKYLIESSLASEAE 371 (434)
Q Consensus 336 ~~~yR~~~--e~~~~~~~DPl~~~~~~L~~~G~~te~e 371 (434)
+..||..+ +..+|.++||+++|+++|.++|++++++
T Consensus 559 ~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~g~~~~~~ 596 (603)
T 4feg_A 559 SAMSSAADIEAFKQRYEAQDLQPLSTYLKQFGLDDLQH 596 (603)
T ss_dssp TTTSCHHHHHHHHHHHTCTTCCCHHHHHHHTTC-----
T ss_pred hhhhhHHHHHHHHhhCCcccCCchHHHHHHcCCchhhh
Confidence 45576544 5566667899999999999999998665
No 24
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.70 E-value=2.8e-17 Score=176.32 Aligned_cols=122 Identities=24% Similarity=0.324 Sum_probs=101.5
Q ss_pred CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCcccc
Q 013928 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMSH 270 (434)
Q Consensus 192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~~ 270 (434)
++.|+||+++|.|+|+++| .++++|||++|||+++++ +++|++|.++++|+++||.|| +|++....
T Consensus 410 ~~~g~mG~~l~~AiGaala-----------~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~ 476 (590)
T 1v5e_A 410 PLFATMGIAIPGGLGAKNT-----------YPDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNK 476 (590)
T ss_dssp CSSCCTTCHHHHHHHHHHH-----------CTTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGT
T ss_pred CCCCcccChHHHHHHHHHh-----------CCCCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHH
Confidence 4689999999999999999 678899999999999997 799999999999977777655 67776432
Q ss_pred ccc---------ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 013928 271 LRA---------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (434)
Q Consensus 271 ~~~---------~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~ 329 (434)
+.. ...+|+.+++++||+++++|+ ++.++.+++++|++..+. ++|+|||+.|+|..
T Consensus 477 q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~gp~liev~~~~~~ 541 (590)
T 1v5e_A 477 YEDTNKNLFGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKA-GHTVVIDCKITQDR 541 (590)
T ss_dssp TSSSCCSCCCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHT-TCCEEEEEECCSCC
T ss_pred HHHhcCCCccccCCCCCHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHHhcCC-CCCEEEEEEecccc
Confidence 211 134789999999999999998 467888888888766553 79999999999865
No 25
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.67 E-value=5.4e-17 Score=174.89 Aligned_cols=124 Identities=20% Similarity=0.178 Sum_probs=102.0
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~ 269 (434)
.+++|+||+++|.|+|+|+| .++++|||++|||+++++ +++|++|.++++|+++||.|| +|++...
T Consensus 438 ~g~~G~~G~~l~~AiGaala-----------~~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~ 504 (616)
T 2pan_A 438 CGQAGPLGWTIPAALGVCAA-----------DPKRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIRQ 504 (616)
T ss_dssp CTTTCCTTCHHHHHHHHHHH-----------CTTCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHHH
T ss_pred CCCcccccchHHHHHHHHHh-----------CCCCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHHH
Confidence 46679999999999999999 678899999999999987 789999999999977766666 5776422
Q ss_pred cc----------------cccc----CchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 013928 270 HL----------------RATS----DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (434)
Q Consensus 270 ~~----------------~~~~----~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~ 329 (434)
.. .... .+|+.+++++||+++++|++ +.++.+++++|+++++..++|+|||+.|+|..
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~~~~~~~gp~lIev~~~~~~ 582 (616)
T 2pan_A 505 SQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFK--PEDIAPAFEQAKALMAQYRVPVVVEVILERVT 582 (616)
T ss_dssp HGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEECS--GGGHHHHHHHHHHHHHHHCSCEEEEEEBCSCC
T ss_pred HHHHhcCCccccccccccccccCCCCCCCHHHHHHHcCCeEEEECC--HHHHHHHHHHHHhhcccCCCcEEEEEEecccc
Confidence 10 0111 26899999999999999974 56888999988877776789999999999866
No 26
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.66 E-value=3.5e-17 Score=173.10 Aligned_cols=114 Identities=22% Similarity=0.415 Sum_probs=93.4
Q ss_pred ccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCcccccc-
Q 013928 195 AFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMSHLR- 272 (434)
Q Consensus 195 g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~~~~- 272 (434)
|+||+++|.|+|+++| .++++|||++|||+++++ +++|++|.++++|+++||.|| +|++......
T Consensus 401 g~~G~~l~~A~G~a~a-----------~~~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~ 467 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLA-----------EPERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGV 467 (528)
T ss_dssp CCTTSHHHHHHHHHHH-----------CTTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHh-----------CCCCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHH
Confidence 9999999999999999 677899999999999998 899999999999988877766 5777443210
Q ss_pred ---------cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 273 ---------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 273 ---------~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
....+|+.+++++||+++++|++. .++.+ +++++++.++|+|||+.|++
T Consensus 468 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~--~~l~~----al~~a~~~~gp~liev~~~~ 525 (528)
T 1q6z_A 468 LEAENVPGLDVPGIDFRALAKGYGVQALKADNL--EQLKG----SLQEALSAKGPVLIEVSTVS 525 (528)
T ss_dssp HTCCSCCSCBCCCCCHHHHHHHHTCEEEEESSH--HHHHH----HHHHHHTCSSCEEEEEEBCC
T ss_pred hcCCCcccCCCCCCCHHHHHHHcCCeEEEeCCH--HHHHH----HHHHHHHCCCcEEEEEEecC
Confidence 013568999999999999999865 45555 55555667899999999975
No 27
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.64 E-value=1.3e-16 Score=171.18 Aligned_cols=122 Identities=23% Similarity=0.316 Sum_probs=98.1
Q ss_pred CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCcccc
Q 013928 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMSH 270 (434)
Q Consensus 192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~~ 270 (434)
.+.|+||+++|.|+|+++| .++++|||++|||+|+++ +++|++|.++++|+++||.|| +|++....
T Consensus 421 ~g~g~mG~~l~~AiGaala-----------~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~ 487 (589)
T 2pgn_A 421 MAEGILGCGFPMALGAQLA-----------EPNSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANWTL 487 (589)
T ss_dssp TTTCCTTCHHHHHHHHHHH-----------CTTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHH
T ss_pred CCcchhhhHHHHHHHHHHh-----------CCCCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccchHH
Confidence 4579999999999999999 678899999999999997 699999999999977777666 57665432
Q ss_pred c---------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCC
Q 013928 271 L---------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 332 (434)
Q Consensus 271 ~---------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs 332 (434)
. .....+|+.+++++||+++++|++. .++.+++++|+ +.++|+|||+.|+|..+..
T Consensus 488 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~--~el~~al~~a~----~~~gp~liev~~~~~~~~~ 552 (589)
T 2pgn_A 488 MNHQFGQNNWTEFMNPDWVGIAKAFGAYGESVRET--GDIAGALQRAI----DSGKPALIEIPVSKTQGLA 552 (589)
T ss_dssp HHHHHSSCCSCBCCCCCHHHHHHHHTCEEEECTTT--CCHHHHHHHHH----HHCSCEEEEEECCSSSSTT
T ss_pred HHhhcCCCccccCCCCCHHHHHHHCCCeEEEECCH--HHHHHHHHHHH----hCCCCEEEEEEecCCCCcC
Confidence 1 1123578999999999999999865 47767666654 4579999999999876543
No 28
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.63 E-value=1.5e-16 Score=169.81 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=95.7
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~ 269 (434)
.++.|+||+++|.|+|+++| .++++|||++|||+++++ +++|++|.++++|+++||.|| +|++...
T Consensus 416 ~~g~g~mG~~l~~AiGaala-----------~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~ 482 (566)
T 1ozh_A 416 SNGQQTMGVALPWAIGAWLV-----------NPERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVAI 482 (566)
T ss_dssp CCTTCCTTCHHHHHHHHHHH-----------STTSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHHH
T ss_pred CCCcccccchHHHHHHHHHh-----------CCCCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCchhHHHH
Confidence 45679999999999999999 678899999999999986 688999999999977777666 5766442
Q ss_pred cc---------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928 270 HL---------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (434)
Q Consensus 270 ~~---------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~ 328 (434)
.. .....+|+.+++++||+++++|++ +.++.+++++|+ +.++|+|||+.|+|.
T Consensus 483 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~----~~~gp~liev~~~~~ 544 (566)
T 1ozh_A 483 QEEKKYQRLSGVEFGPMDFKAYAESFGAKGFAVES--AEALEPTLRAAM----DVDGPAVVAIPVDYR 544 (566)
T ss_dssp HHHHHHSSCCSCBCCCCCHHHHHHTTTSEEEECCS--GGGHHHHHHHHH----HSSSCEEEEEEBCCT
T ss_pred HHHHhcCCCccCcCCCCCHHHHHHHcCCeEEEeCC--HHHHHHHHHHHH----hCCCCEEEEEEeCCC
Confidence 21 122347899999999999999985 457767666554 568999999999864
No 29
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.62 E-value=2.3e-16 Score=171.93 Aligned_cols=121 Identities=24% Similarity=0.351 Sum_probs=96.9
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~ 269 (434)
.+++|+||+++|+|+|+++| .+++.|||++|||+|+++ +++|++|.++++|+++||.|| +|++...
T Consensus 509 sg~~G~mG~~lpaAiGaalA-----------~p~~~Vv~i~GDGsf~~~--~~eL~ta~~~~l~v~ivV~NN~~~g~~~~ 575 (677)
T 1t9b_A 509 SGGLGTMGYGLPAAIGAQVA-----------KPESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNEEQGMVTQ 575 (677)
T ss_dssp CCSSCCTTCHHHHHHHHHHH-----------CTTSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECSSCHHHHH
T ss_pred CCCcchhhchHHHHHHHHHh-----------CCCCeEEEEEeehHHhcc--HHHHHHHHHhCCCeEEEEEeCCCchhhhh
Confidence 56679999999999999999 678999999999999986 678999999999977666655 5765432
Q ss_pred cc----------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 013928 270 HL----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330 (434)
Q Consensus 270 ~~----------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~g 330 (434)
.. .....+|+.+++++||+++++|+ ++.++.+++++|+ ..++|+|||+.|+|...
T Consensus 576 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIev~~~~~~~ 640 (677)
T 1t9b_A 576 WQSLFYEHRYSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFV----STKGPVLLEVEVDKKVP 640 (677)
T ss_dssp HHHHHSTTCCCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHH----HCSSCEEEEEEBCSSCC
T ss_pred hhhhhcCCCcccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHH----HCCCcEEEEEEecCCcc
Confidence 11 01235789999999999999997 4667777666554 46899999999998654
No 30
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.62 E-value=3.4e-16 Score=166.25 Aligned_cols=118 Identities=17% Similarity=0.125 Sum_probs=94.2
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~ 269 (434)
.++.|+||+++|.|+|+++| .++++|||++|||+++++ +++|.+|.++++|+++||.|| +|++...
T Consensus 404 ~~~~g~mG~~l~~A~G~a~a-----------~~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~ 470 (552)
T 1ovm_A 404 QPLWGSIGYTLAAAFGAQTA-----------CPNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERA 470 (552)
T ss_dssp CTTTCCTTHHHHHHHHHHHH-----------CTTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHH
T ss_pred chhhHhhhhHHHHHHHHHHh-----------CCCCcEEEEECchHHHhH--HHHHHHHHHhCCCCEEEEEECCCCeEEEe
Confidence 45689999999999999999 678899999999999986 889999999999977776655 5776532
Q ss_pred cc------ccccCchhhhccccCCC----cEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 270 HL------RATSDPQIYKKGPAFGM----PGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 270 ~~------~~~~~~d~~~~a~a~Gi----~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
.. .....+|+.+++++||+ ++++|++ +.++.+++ +++++.++|+|||+.|++
T Consensus 471 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~v~~--~~~l~~al----~~a~~~~gp~liev~~~~ 532 (552)
T 1ovm_A 471 IHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVSE--AEQLADVL----EKVAHHERLSLIEVMLPK 532 (552)
T ss_dssp HSCTTCGGGCCCCCCGGGSTTTSCSSCCEEEEEECB--HHHHHHHH----HHHTTCSSEEEEEEECCT
T ss_pred eccCCCCcccCCCCCHHHHHHHhCCCcCCCEEEeCC--HHHHHHHH----HHHHhCCCCEEEEEEcCc
Confidence 11 11234789999999999 8999984 55666644 455567899999999975
No 31
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.62 E-value=2.6e-16 Score=168.11 Aligned_cols=118 Identities=24% Similarity=0.217 Sum_probs=95.1
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~ 269 (434)
.++.|+||+++|.|+|+++| .++++|||++|||+++++ +++|++|.++++|+++||.|| +|++...
T Consensus 432 ~~g~g~mG~~l~~AiGaa~a-----------~~~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~~ 498 (573)
T 2iht_A 432 SAGCSSFGYGIPAAIGAQMA-----------RPDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIEL 498 (573)
T ss_dssp CSSSCCTTCHHHHHHHHHHH-----------STTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHH
T ss_pred CCCCcccccHHHHHHHHHHh-----------CCCCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhHH
Confidence 35679999999999999999 578899999999999987 789999999999976666655 5776543
Q ss_pred c---------c--ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 270 H---------L--RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 270 ~---------~--~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
. . .....+|+.+++++||+++++|+ +..++.+++++ +++.++|+|||+.|+|
T Consensus 499 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~----a~~~~gp~liev~~~~ 561 (573)
T 2iht_A 499 YQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRK----GAELGRPFLIEVPVNY 561 (573)
T ss_dssp HHHHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHH----HHTSSSCEEEEEEBCC
T ss_pred HHHHhcCCCcCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHH----HHhCCCCEEEEEECCC
Confidence 1 0 12234789999999999999997 45666665554 4567899999999988
No 32
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.62 E-value=3.3e-16 Score=167.88 Aligned_cols=122 Identities=23% Similarity=0.323 Sum_probs=96.7
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~ 269 (434)
.+++|+||+++|+|+|+++| .++++|||++|||+++++ +++|++|.++++|+++||.|| +|++...
T Consensus 422 ~g~~G~~G~~l~~AiGaala-----------~~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~ 488 (590)
T 1ybh_A 422 SGGLGAMGFGLPAAIGASVA-----------NPDAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVMQ 488 (590)
T ss_dssp CCSSCCTTCHHHHHHHHHHH-----------CTTSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHHH
T ss_pred CCCcccccchHHHHHHHHHh-----------CCCCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHHH
Confidence 45679999999999999999 678899999999999987 789999999999976666555 6766432
Q ss_pred cc---------cc---c------cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCC
Q 013928 270 HL---------RA---T------SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH 331 (434)
Q Consensus 270 ~~---------~~---~------~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gH 331 (434)
.. .. . ..+|+.+++++||+++++|+ ++.++.+++++| .+.++|+|||+.|+|....
T Consensus 489 ~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a----~~~~gp~liev~~~~~~~~ 562 (590)
T 1ybh_A 489 WEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTM----LDTPGPYLLDVICPHQEHV 562 (590)
T ss_dssp HHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHH----HHSSSCEEEEEECCTTCCC
T ss_pred HHHHhcCCccccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEecCCccc
Confidence 10 00 1 14689999999999999997 456776655555 4568999999999987653
No 33
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.61 E-value=2.9e-16 Score=167.50 Aligned_cols=153 Identities=20% Similarity=0.288 Sum_probs=109.0
Q ss_pred CCHHHHHHHHhcCCCCCc--cCCCC-----CcccccC-CCcc--cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928 157 VPARAVMSELFGKATGCC--RGQGG-----SMHMFSK-EHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 226 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~~--~G~gg-----s~h~~~~-~~~~--~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~ 226 (434)
+++..++.++....+... ..+.| ++++..+ +..+ .+++|+||+++|.|+|+++| .++++
T Consensus 361 l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~ala-----------~~~~~ 429 (566)
T 2vbi_A 361 LTNDEIVRHINALLTSNTTLVAETGDSWFNAMRMTLPRGARVELEMQWGHIGWSVPSAFGNAMG-----------SQDRQ 429 (566)
T ss_dssp CCHHHHHHHHHHHCCTTEEEEECSSHHHHHHHTCCCCTTCEEECCTTTCCTTTHHHHHHHHHHT-----------CTTSE
T ss_pred cCHHHHHHHHHHhcCCCCEEEECCchHHHhhhheECCCCCEEEecCcccchhhHHHHHHHHHHh-----------CCCCc
Confidence 566677766665544321 12222 2222222 1222 35689999999999999999 67889
Q ss_pred EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCcccccc----cccCchhhhccccCCC-----cEEEEeCC
Q 013928 227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMSHLR----ATSDPQIYKKGPAFGM-----PGFHVDGM 296 (434)
Q Consensus 227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~~~~----~~~~~d~~~~a~a~Gi-----~~~~VdG~ 296 (434)
|||++|||+++++ +++|++|.++++|+++||.|| +|++...... ....+|+.+++++||+ ++++|+
T Consensus 430 vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~-- 505 (566)
T 2vbi_A 430 HVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNYIKNWDYAGLMEVFNAGEGHGLGLKAT-- 505 (566)
T ss_dssp EEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCCCCCCTTTHHHHHHTTTCCCEEEEEC--
T ss_pred EEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCcceEEEeeccCCccCCCCCCHHHHHHHcCCCCCCccEEEeC--
Confidence 9999999999986 678999999999966666555 6776543221 1235689999999999 999997
Q ss_pred CHHHHHHHHHHHHHHHHcc-CCCEEEEEEEecC
Q 013928 297 DVLKVREVAKEAIERARRG-EGPTLVECETYRF 328 (434)
Q Consensus 297 D~~av~~a~~~Al~~ar~~-~gP~lIev~t~R~ 328 (434)
++.++.++++++ ... ++|+|||+.|+|.
T Consensus 506 ~~~el~~al~~a----~~~~~gp~liev~~~~~ 534 (566)
T 2vbi_A 506 TPKELTEAIARA----KANTRGPTLIECQIDRT 534 (566)
T ss_dssp SHHHHHHHHHHH----HHCCSSCEEEEEECCTT
T ss_pred CHHHHHHHHHHH----HhcCCCcEEEEEEeCcc
Confidence 456776665555 444 7999999999763
No 34
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.61 E-value=3.2e-16 Score=166.97 Aligned_cols=157 Identities=15% Similarity=0.117 Sum_probs=109.6
Q ss_pred CCHHHHHHHHhcCCCCCc--cCCCCCc----ccc--cCCCc--ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928 157 VPARAVMSELFGKATGCC--RGQGGSM----HMF--SKEHN--LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 226 (434)
Q Consensus 157 ~~~~~i~~el~g~~~g~~--~G~ggs~----h~~--~~~~~--~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~ 226 (434)
+++..++.++....++.. ..+.|.. ..+ ..... ..+++|+||+++|.|+|+|+|.+.+ +.+++
T Consensus 365 ~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~-------~~~~~ 437 (563)
T 2vk8_A 365 LKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEI-------DPKKR 437 (563)
T ss_dssp CCHHHHHHHHTTTCCTTCEEEECTTHHHHHGGGSCCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHH-------CTTCC
T ss_pred cCHHHHHHHHHHhCCCCCEEEECCchHHHHHhhcCcCCCCeEEcccchhhhhhHHHHHHHHHHhCccc-------CCCCC
Confidence 567777777776654331 2222321 111 11122 2467899999999999999997654 45688
Q ss_pred EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccccc------ccccCchhhhccccCCCc---EEEEeCC
Q 013928 227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMSHL------RATSDPQIYKKGPAFGMP---GFHVDGM 296 (434)
Q Consensus 227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~~~------~~~~~~d~~~~a~a~Gi~---~~~VdG~ 296 (434)
|||++|||+|+++ +++|++|.++++|+++||.|| +|++..... .....+|+.+++++||++ +++|++
T Consensus 438 vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~v~~- 514 (563)
T 2vk8_A 438 VILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVAT- 514 (563)
T ss_dssp EEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGHHHHTTCSSEEEEEECB-
T ss_pred EEEEEcchHhhcc--HHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCcccCCCCCHHHHHHHhCCCCCcEEEecC-
Confidence 9999999999986 789999999999977777655 577643211 112346899999999999 999985
Q ss_pred CHHHHHHHHH-HHHHHHHccCCCEEEEEEEec
Q 013928 297 DVLKVREVAK-EAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 297 D~~av~~a~~-~Al~~ar~~~gP~lIev~t~R 327 (434)
+.++.++++ ++++ ..++|+|||+.|++
T Consensus 515 -~~el~~al~~~a~~---~~~~p~liev~~~~ 542 (563)
T 2vk8_A 515 -TGEWDKLTQDKSFN---DNSKIRMIEVMLPV 542 (563)
T ss_dssp -HHHHHHHHTCTTTT---SCSSEEEEEEECCT
T ss_pred -HHHHHHHHHHHHHh---CCCCcEEEEEEeCc
Confidence 557666555 4331 23479999999874
No 35
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.61 E-value=5.6e-16 Score=164.78 Aligned_cols=120 Identities=23% Similarity=0.290 Sum_probs=93.8
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~ 269 (434)
.++.|+||+++|.|+|+++| .+++.|||++|||+|+++ +++|++|.++++|+++||.|| +|++...
T Consensus 402 ~~~~g~mG~~l~~AiGaala-----------~~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~~ 468 (549)
T 3eya_A 402 SFNHGSMANAMPQALGAQAT-----------EPERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVAM 468 (549)
T ss_dssp CTTTCCTTCHHHHHHHHHHH-----------STTSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC--
T ss_pred CCCCchhhhHHHHHHHHHHh-----------CCCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHH
Confidence 34679999999999999999 678899999999999987 789999999999976666655 5765322
Q ss_pred ccc---------cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 013928 270 HLR---------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (434)
Q Consensus 270 ~~~---------~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~ 329 (434)
... ....+|+.+++++||+++++|+.. .++.++++++ ++.+||+|||+.|.+..
T Consensus 469 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~--~~l~~al~~a----~~~~gp~liev~~~~~~ 531 (549)
T 3eya_A 469 EMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKA--SEVDEALQRA----FSIDGPVLVDVVVAKEE 531 (549)
T ss_dssp ----------CCBCCCCCHHHHHHHTTSEEEEECSG--GGHHHHHHHH----HHSSSCEEEEEEBCCCC
T ss_pred HHHhcCCCCcCCcCCCCCHHHHHHHcCCcEEEeCCH--HHHHHHHHHH----HhCCCCEEEEEEecccc
Confidence 111 113468999999999999999754 4666655554 45689999999998754
No 36
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.61 E-value=5.3e-16 Score=165.53 Aligned_cols=118 Identities=22% Similarity=0.271 Sum_probs=94.4
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEE-cCCccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVE-NNLWAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~-NN~y~is~~ 269 (434)
.+++|+||+++|.|+|+++| .++++|||++|||+++++ +++|++|.++++|+++||. ||+|++...
T Consensus 409 ~~~~g~~G~~l~~A~G~ala-----------~~~~~vv~i~GDGs~~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~ 475 (568)
T 2wvg_A 409 EMQWGHIGWSVPAAFGYAVG-----------APERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGYTIEVM 475 (568)
T ss_dssp CTTTCCTTTHHHHHHHHHHH-----------CTTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHT
T ss_pred CCCcchhhhHHHHHHHHHHh-----------CCCCcEEEEEcChhHhcc--HHHHHHHHHcCCCcEEEEEECCcceEeee
Confidence 45689999999999999999 678899999999999986 7889999999999766665 556776543
Q ss_pred ccc----cccCchhhhccccCCC---------cEEEEeCCCHHHHHHHHHHHHHHHHcc-CCCEEEEEEEec
Q 013928 270 HLR----ATSDPQIYKKGPAFGM---------PGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETYR 327 (434)
Q Consensus 270 ~~~----~~~~~d~~~~a~a~Gi---------~~~~VdG~D~~av~~a~~~Al~~ar~~-~gP~lIev~t~R 327 (434)
... ....+|+.+++++||+ ++++|+ +..++.+++++++ .. ++|+|||+.|+|
T Consensus 476 ~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~el~~al~~a~----~~~~gp~liev~~~~ 541 (568)
T 2wvg_A 476 IHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGGELAEAIKVAL----ANTDGPTLIECFIGR 541 (568)
T ss_dssp TSCCGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHH----HCCSSCEEEEEECCT
T ss_pred eccCCCcCCCCCCHHHHHHHhCCCcccccCCcceEEeC--CHHHHHHHHHHHH----hcCCCcEEEEEEcCc
Confidence 221 1234689999999999 899997 4567777666554 33 799999999976
No 37
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.61 E-value=6.4e-16 Score=164.87 Aligned_cols=120 Identities=18% Similarity=0.172 Sum_probs=95.1
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-c-cCc
Q 013928 190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-W-AIG 267 (434)
Q Consensus 190 ~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y-~is 267 (434)
..+.+|+||+++|.|+|+++| ++++|||++|||+|++. +++|++|.++++|+++||.||+ | .+.
T Consensus 421 ~~g~~g~~G~~l~~AiGaala------------~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~ 486 (568)
T 2c31_A 421 DSGTWGVMGIGMGYCVAAAAV------------TGKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNGGIYKGN 486 (568)
T ss_dssp ESTTTTCSSCHHHHHHHHHHH------------HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEESSBSSCSC
T ss_pred cCCCCccccccHHHHHHHHhC------------CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHH
Confidence 356679999999999999998 26789999999999986 7899999999999888888886 2 222
Q ss_pred ccc---cc----cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 013928 268 MSH---LR----ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (434)
Q Consensus 268 ~~~---~~----~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~ 329 (434)
... .. ....+|+.+++++||+++++|+ ++.++.+++++++ +.++|+|||+.|+|..
T Consensus 487 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~~~ 549 (568)
T 2c31_A 487 EADPQPGVISCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAV----ASGKPCLINAMIDPDA 549 (568)
T ss_dssp CCCSBTTBCCTTBCCCCCHHHHHHTTTCEEEEES--SHHHHHHHHHHHH----HHTSCEEEEEEBCTTS
T ss_pred HHHhhcCCcccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecccc
Confidence 111 00 0245789999999999999997 5667777666665 4578999999998753
No 38
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.61 E-value=5.4e-16 Score=165.54 Aligned_cols=119 Identities=21% Similarity=0.159 Sum_probs=94.3
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~ 269 (434)
.+++|+||+++|.|+|+++| .++++|||++|||+++++ +++|++|.++++|+++||.|| +|++...
T Consensus 421 ~~~~g~mG~~l~~A~Gaala-----------~~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~ 487 (570)
T 2vbf_A 421 QPLWGSIGYTFPAALGSQIA-----------DKESRHLLFIGDGSLQLT--VQELGLSIREKLNPICFIINNDGYTVERE 487 (570)
T ss_dssp CTTTCCTTTHHHHHHHHHHH-----------CTTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHH
T ss_pred CccchhhhhhHHHHHHHHHh-----------CCCCcEEEEEcchhhhcC--HHHHHHHHHcCCCCEEEEEECCchHHHHH
Confidence 36789999999999999999 678899999999999986 788999999999976666655 6776442
Q ss_pred cc------ccccCchhhhccccCCCc-----EEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 270 HL------RATSDPQIYKKGPAFGMP-----GFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 270 ~~------~~~~~~d~~~~a~a~Gi~-----~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
.. .....+|+.+++++||++ +++|++ +.++.++++++ ++..++|+|||+.|+|
T Consensus 488 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~~--~~el~~al~~a---~~~~~~p~liev~~~~ 551 (570)
T 2vbf_A 488 IHGPTQSYNDIPMWNYSKLPETFGATEDRVVSKIVRT--ENEFVSVMKEA---QADVNRMYWIELVLEK 551 (570)
T ss_dssp HSCTTCGGGCCCCCCGGGHHHHTTCCTTTEEEEEECB--HHHHHHHHHHH---HHCTTSEEEEEEECCT
T ss_pred HhccCCCccCCCCCCHHHHHHHcCCCcCCcceEEecC--HHHHHHHHHHH---HhcCCCcEEEEEEcCc
Confidence 21 112347899999999998 889974 55766655543 3567899999999975
No 39
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.60 E-value=5.1e-16 Score=165.50 Aligned_cols=120 Identities=23% Similarity=0.380 Sum_probs=95.0
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~ 269 (434)
.++.|+||+++|.|+|+++|.| +++++|||++|||+++++ +++|++|.++++|+++||.|| +|++...
T Consensus 415 ~~g~g~~G~~l~~AiGaa~a~~---------~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~ 483 (563)
T 2uz1_A 415 HGYLGSMGVGFGTALGAQVADL---------EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATLH 483 (563)
T ss_dssp CCTTCCTTTHHHHHHHHHHHHH---------HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHHH
T ss_pred CCCCccccChHHHHHHHHHHhh---------CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 3557999999999999999954 157899999999999997 689999999999977666655 6776543
Q ss_pred cc-------ccc----cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 270 HL-------RAT----SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 270 ~~-------~~~----~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
.. ... ..+|+.+++++||+++++|+ ++.++.+++++|+ +.++|+|||+.|++
T Consensus 484 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~ 546 (563)
T 2uz1_A 484 FQQLAVGPNRVTGTRLENGSYHGVAAAFGADGYHVD--SVESFSAALAQAL----AHNRPACINVAVAL 546 (563)
T ss_dssp HHHHHTCTTCCCSCBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHH----HSSSCEEEEEECCS
T ss_pred HHHHhcCCCcccCCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----HCCCCEEEEEEecc
Confidence 21 111 34689999999999999997 4667777666554 46899999999974
No 40
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.59 E-value=5.2e-16 Score=165.62 Aligned_cols=118 Identities=20% Similarity=0.246 Sum_probs=93.5
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS 269 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~ 269 (434)
.+++|+||+++|.|+|+|+| .++++|||++|||+++++ +++|++|.++++|+++||.|| +|++...
T Consensus 418 ~~~~g~mG~~l~~A~G~ala-----------~~~~~vv~i~GDG~~~~~--~~~l~ta~~~~l~~~ivv~nN~~~~~~~~ 484 (565)
T 2nxw_A 418 PGYYAGMGFGVPAGIGAQCV-----------SGGKRILTVVGDGAFQMT--GWELGNCRRLGIDPIVILFNNASWEMLRT 484 (565)
T ss_dssp CTTTCCTTCHHHHHHHHHHH-----------TTTCCEEEEEEHHHHHHH--GGGGGGHHHHTCCCEEEEEECSBCHHHHH
T ss_pred cCccccccccchHHHHHHHh-----------CCCCcEEEEEechHHHhh--HHHHHHHHHhCCCCEEEEEECCCCcEEee
Confidence 45679999999999999999 578899999999999975 889999999999977666655 5766422
Q ss_pred cc-----ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCE-EEEEEEec
Q 013928 270 HL-----RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT-LVECETYR 327 (434)
Q Consensus 270 ~~-----~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~-lIev~t~R 327 (434)
.+ .....+|+.+++++||+++++|++ +.++.+++++++ +.++|+ |||+.|++
T Consensus 485 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~----~~~gp~~liev~~~~ 542 (565)
T 2nxw_A 485 FQPESAFNDLDDWRFADMAAGMGGDGVRVRT--RAELKAALDKAF----ATRGRFQLIEAMIPR 542 (565)
T ss_dssp HCTTCGGGBCCCCCHHHHTGGGTSEEEEECB--HHHHHHHHHHHH----HCCSSCEEEEEECCT
T ss_pred ecccCCCCcCCCCCHHHHHHHcCCCEEEeCC--HHHHHHHHHHHH----hcCCCeEEEEEEccc
Confidence 11 122457899999999999999984 567766665554 457888 99999975
No 41
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.58 E-value=2.8e-15 Score=159.79 Aligned_cols=119 Identities=21% Similarity=0.236 Sum_probs=94.7
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-c-cCcc
Q 013928 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-W-AIGM 268 (434)
Q Consensus 191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y-~is~ 268 (434)
.+.+|+||+++|.|+|+++| ++++|||++|||+|+++ .++|++|.++++|+++||.||+ | ++.
T Consensus 417 ~g~~g~~G~~l~~AiGaa~a------------~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~- 481 (564)
T 2q28_A 417 CGTWGVMGIGMGYAIGASVT------------SGSPVVAIEGDSAFGFS--GMEIETICRYNLPVTIVIFNNGGIYRGD- 481 (564)
T ss_dssp STTTTCTTCHHHHHHHHHHH------------HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEECSBSSCSC-
T ss_pred CCCCCcccchHHHHHHHhhc------------CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHH-
Confidence 56679999999999999998 26789999999999886 6899999999999888888876 3 332
Q ss_pred ccc-------c---cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 013928 269 SHL-------R---ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330 (434)
Q Consensus 269 ~~~-------~---~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~g 330 (434)
... . ....+|+.+++++||+++++|+ ++.++.+++++|+ +.++|+|||+.|+|...
T Consensus 482 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~~~~ 547 (564)
T 2q28_A 482 GVDLSGAGAPSPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRHALTTGI----QSRKPTIINVVIDPAAG 547 (564)
T ss_dssp CCCTTSSCCCCTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHHHHHHHH----HHTSCEEEEEEBCTTSS
T ss_pred HHHHhccCCccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeccccC
Confidence 111 0 1124789999999999999997 4667777666665 45789999999987543
No 42
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=99.57 E-value=2.4e-15 Score=165.40 Aligned_cols=196 Identities=15% Similarity=0.176 Sum_probs=143.8
Q ss_pred cccccCCCChHHHHHHHHHhcCC--CCEEEccCcchHHHHH------cC--------CC--HHHH---HHHHhcCCCCCc
Q 013928 116 FGFVHLYNGQEAVSTGFIKLLKK--EDSVVSTYRDHVHALS------KG--------VP--ARAV---MSELFGKATGCC 174 (434)
Q Consensus 116 ~G~~h~~~GqEa~~~g~~~~L~~--~D~v~~~yR~~~~~La------~G--------~~--~~~i---~~el~g~~~g~~ 174 (434)
.|+...+.|.--+.+.+...++. .|.+|-.--||+..+. .| ++ ++++ |+++ ++..+
T Consensus 82 sGH~G~~~g~a~iy~~~~~~~~~~~rDr~fvls~GHg~p~lYa~l~l~G~~~~~~p~~s~d~e~Lk~lfrqf-s~~gg-- 158 (845)
T 3ahc_A 82 VGHWGTTPGLNFLLAHINRLIADHQQNTVFIMGPGHGGPAGTSQSYVDGTYTEYYPNITKDEAGLQKFFRQF-SYPGG-- 158 (845)
T ss_dssp CSCCTTHHHHHHHHHHHHHHHHHHTBCBCCEESSGGGHHHHHHHHHHHTHHHHHCTTSCSSHHHHHHHHHHB-TCTTS--
T ss_pred CCCCCCCHHHHHHHHHHHHhcccCCCceEEEECcCcHHHHHHHHHHHcCCCccccccccccHHHHHHHHHhc-cCCCC--
Confidence 45554456665554444444432 4553222236664321 33 23 4555 7776 44322
Q ss_pred cCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccch---HHHHHHHHHHc
Q 013928 175 RGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQ---FFECLNMAALW 251 (434)
Q Consensus 175 ~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~---~~EaLn~A~~~ 251 (434)
-+.|......++...+|+||++++.|+|+|+. +++..|+|++|||+.++|. .||+.+++..+
T Consensus 159 ----~pgHp~~~tpGve~~tG~LGqGls~AvG~A~~-----------~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~ 223 (845)
T 3ahc_A 159 ----IPSHFAPETPGSIHEGGELGYALSHAYGAVMN-----------NPSLFVPCIIGDGEAETGPLATGWQSNKLVNPR 223 (845)
T ss_dssp ----BCSSCCTTSTTCSCCCSSTTCHHHHHHHHHTT-----------CTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTT
T ss_pred ----CCCCCCCCCCCeecCCCCccchHhHHhhhhhc-----------CCCCeEEEEECCCchhhhcchhhhHHhhhhhhh
Confidence 12344333457888899999999999999975 6788999999999999999 89999999999
Q ss_pred CCC-eEEEEEcCCccCccccccc-ccCchhhhccccCCCcEE-EEeC-C--CHHHHHHHHHHHHHH-----------HHc
Q 013928 252 KLP-IVFVVENNLWAIGMSHLRA-TSDPQIYKKGPAFGMPGF-HVDG-M--DVLKVREVAKEAIER-----------ARR 314 (434)
Q Consensus 252 ~LP-vI~VV~NN~y~is~~~~~~-~~~~d~~~~a~a~Gi~~~-~VdG-~--D~~av~~a~~~Al~~-----------ar~ 314 (434)
++. +|.|+++|+|.|+.++... .+..++.+++++|||.++ .||| + |+.++..++.+|++. ++.
T Consensus 224 ~l~nl~~i~D~N~~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~ 303 (845)
T 3ahc_A 224 TDGIVLPILHLNGYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQT 303 (845)
T ss_dssp TSCEEEEEEEECSBSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEEECCCCcCCCCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998 8899999999999887543 245789999999999999 9999 8 999999888766633 343
Q ss_pred --cCCC--EEEEEEEecCC
Q 013928 315 --GEGP--TLVECETYRFR 329 (434)
Q Consensus 315 --~~gP--~lIev~t~R~~ 329 (434)
.++| ++|.++|.+++
T Consensus 304 ~~~~kP~w~~Ii~rT~kG~ 322 (845)
T 3ahc_A 304 DDMTRPFYPMLIFRTPKGW 322 (845)
T ss_dssp CCSSCCCEEEEEEECCTTT
T ss_pred ccCCCCCCeEEEEECcccC
Confidence 3689 99999999999
No 43
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.54 E-value=2.4e-15 Score=160.16 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=103.8
Q ss_pred CCCHHHHHHHHhcCCCCCc---cCCCCCccc---c---cCCCccc---CCcccccccchhhHHHHHHHHHHHhhhhhcCC
Q 013928 156 GVPARAVMSELFGKATGCC---RGQGGSMHM---F---SKEHNLL---GGFAFIGEGIPVATGAAFTSKYRREVLKEADC 223 (434)
Q Consensus 156 G~~~~~i~~el~g~~~g~~---~G~ggs~h~---~---~~~~~~~---~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~ 223 (434)
.+++..++.++....++.. .|.+..... + .....+. +..|++|+ +|.|+|+++| +
T Consensus 366 ~~~~~~~~~~l~~~l~~~~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~G~-l~~A~Gaa~a------------~ 432 (556)
T 3hww_A 366 AFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQLPAGYPVYSNRGASGIDGL-LSTAAGVQRA------------S 432 (556)
T ss_dssp SSSHHHHHHTGGGTCCTTCEEEECSSHHHHHHHHHCCCCTTCCEEECCSSCCSSSH-HHHHHHHHHH------------H
T ss_pred CcCHHHHHHHHHHhCCCCCeEEEeCCcHHHHHHHhccCCCCceEEecCcccccccH-HHHHHHHHhc------------C
Confidence 4778888888877766432 222211101 1 1122222 45677777 9999999998 2
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccc-------c---ccccCchhhhccccCCCcEEE
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH-------L---RATSDPQIYKKGPAFGMPGFH 292 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~-------~---~~~~~~d~~~~a~a~Gi~~~~ 292 (434)
+++|||++|||+|+++ .++|++|.++++|+++||.||+ |++.... . .....+|+.+++++||+++++
T Consensus 433 ~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~ 510 (556)
T 3hww_A 433 GKPTLAIVGDLSALYD--LNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELKYHR 510 (556)
T ss_dssp CCCEEEEEEHHHHHHT--GGGHHHHTTCSSCEEEEEEESCC-----------------CCCCCCCCSHHHHHHTTCEEEC
T ss_pred CCcEEEEEccHHhhhc--chhhHhhcccCCCcEEEEEECCCCCcccCCCCcchhHHHhccCCCCCCHHHHHHHcCCcEEe
Confidence 6789999999999886 6789999999999888888776 4543211 0 011357999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 293 VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
|++. .++.+ +++++++.++|+|||+.|++
T Consensus 511 v~~~--~~l~~----al~~a~~~~gp~liev~~~~ 539 (556)
T 3hww_A 511 PQNW--QELET----AFADAWRTPTTTVIEMVVND 539 (556)
T ss_dssp CSSH--HHHHH----HHHHHTTSSSEEEEEEECCS
T ss_pred cCCH--HHHHH----HHHHHHhCCCCEEEEEECCc
Confidence 9754 45555 55556677899999999864
No 44
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.53 E-value=1.4e-15 Score=163.53 Aligned_cols=116 Identities=16% Similarity=0.067 Sum_probs=89.9
Q ss_pred CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCcccc
Q 013928 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMSH 270 (434)
Q Consensus 192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~~ 270 (434)
.+.+.||+++|.|+|+++| ++++|||++|||+|+++ .++|++|.++++|+++||.|| +|++....
T Consensus 452 ~G~~~ig~~l~~AiGaala------------~~~~vv~i~GDGsf~~~--~~eL~ta~~~~lp~~ivv~NN~~~~i~~~~ 517 (604)
T 2x7j_A 452 RGANGIDGVVSSAMGVCEG------------TKAPVTLVIGDLSFYHD--LNGLLAAKKLGIPLTVILVNNDGGGIFSFL 517 (604)
T ss_dssp TTTCCSSSHHHHHHHHHHH------------HTSCEEEEEEHHHHHHT--GGGGHHHHHHCCCEEEEEEECSSCGGGGGS
T ss_pred CCcCCcCcHHHHHHHHHhc------------CCCcEEEEEccHHHHhH--HHHHHHhhhcCCCeEEEEEeCCCCcccccC
Confidence 4467899999999999998 25789999999999987 678999999999977766655 67763321
Q ss_pred -ccc-----------ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928 271 -LRA-----------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (434)
Q Consensus 271 -~~~-----------~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R 327 (434)
..+ ...+|+.+++++||+++++|++ +.++.++++ ++...++|+|||+.|+|
T Consensus 518 ~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~----~a~~~~gp~liev~~~~ 580 (604)
T 2x7j_A 518 PQASEKTHFEDLFGTPTGLDFKHAAALYGGTYSCPAS--WDEFKTAYA----PQADKPGLHLIEIKTDR 580 (604)
T ss_dssp GGGSCHHHHHHHTTCCCCCCTHHHHHHTTCEEECCSS--HHHHHHHCC----CCCSSCCEEEEEEECCH
T ss_pred CCCccchhhHhhccCCCCCCHHHHHHHcCCeEEecCC--HHHHHHHHH----HHHhCCCCEEEEEECCc
Confidence 111 1346899999999999999984 556666444 44456899999999864
No 45
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=99.47 E-value=1.6e-14 Score=154.44 Aligned_cols=111 Identities=19% Similarity=0.194 Sum_probs=78.0
Q ss_pred ccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCcccc-ccc-
Q 013928 197 IGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMSH-LRA- 273 (434)
Q Consensus 197 lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~~-~~~- 273 (434)
+|+++|.|+|+|+ ++++|||++|||+|+++ .++|++|.++++|+++||.|| +|++.... ..+
T Consensus 438 ~~g~l~~AiGaa~-------------~~~~vv~i~GDGsf~~~--~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~ 502 (578)
T 3lq1_A 438 IDGVVSSALGASV-------------VFQPMFLLIGDLSFYHD--MNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANE 502 (578)
T ss_dssp SSSHHHHHHHHTT-------------TSSSEEEEEEHHHHHHT--GGGGHHHHHTTCCEEEEEECCC-------------
T ss_pred cccHHHHHHHHhc-------------CCCCEEEEEchHHHHhh--HHHHHhhccCCCCeEEEEEECCcCccccccccccc
Confidence 3446899999863 37789999999999986 788999999999988888877 46653311 111
Q ss_pred ----------ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928 274 ----------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (434)
Q Consensus 274 ----------~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~ 328 (434)
...+|+.+++++||+++++|+ +..++.+++ +++++.++|+|||+.|.+.
T Consensus 503 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al----~~a~~~~gp~liev~~~~~ 561 (578)
T 3lq1_A 503 PKYFESLFGTSTELDFRFAAAFYDADYHEAK--SVDELEEAI----DKASYHKGLDIIEVKTNRH 561 (578)
T ss_dssp ------------CCCTHHHHHHTTCEEEECC--SHHHHHHHH----HHHTTSSSEEEEEEC----
T ss_pred cchhhhhccCCCCCCHHHHHHHcCCceEecC--CHHHHHHHH----HHHHhCCCCEEEEEECCcc
Confidence 124689999999999999997 455666544 4555678999999988753
No 46
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.09 E-value=3.2e-10 Score=130.47 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=76.3
Q ss_pred CceEEEEeCcc-ccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccccccc----------------ccCchhhhcccc
Q 013928 224 DHVTLAFFGDG-TCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRA----------------TSDPQIYKKGPA 285 (434)
Q Consensus 224 d~~vv~~~GDG-a~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~~~----------------~~~~d~~~~a~a 285 (434)
++.|||+.||| ++++| .++|.+|..+++||++||.||+ |++....... ...+|+.+++++
T Consensus 953 ~~~Vv~i~GDG~~~~mg--~~eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIG--YGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp CCEEEEEEEHHHHHTTT--HHHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred CCcEEEEeCcHHHHHcc--hHHHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence 57899999999 88999 8899999999999888888876 4443211100 012689999999
Q ss_pred CCCcEEEEe-C-CCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928 286 FGMPGFHVD-G-MDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (434)
Q Consensus 286 ~Gi~~~~Vd-G-~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~ 328 (434)
||++++++. - .++.++.+++++|+ +.+||+||++.+...
T Consensus 1031 ~G~~~va~~~v~~~~~~l~~al~eAl----~~~GP~lI~v~~~c~ 1071 (1231)
T 2c42_A 1031 YGYVYVATVSMGYSKQQFLKVLKEAE----SFPGPSLVIAYATCI 1071 (1231)
T ss_dssp TSSSEEEEECTTTCHHHHHHHHHHHH----HSSSCEEEEEECCCG
T ss_pred CCCCEEEEEeccCCHHHHHHHHHHHH----hcCCCEEEEEeecCc
Confidence 999999643 4 48889888777776 468999999987544
No 47
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=93.13 E-value=0.57 Score=49.58 Aligned_cols=95 Identities=19% Similarity=0.099 Sum_probs=65.6
Q ss_pred CCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc-CcccccccccCchhhhccccCCCcEEEEeCCCHHHH
Q 013928 223 CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 301 (434)
Q Consensus 223 ~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~-is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av 301 (434)
.-.+++|..|=|+++. .-++..|..-+.|+|+|.-+-... ++.....|. .|... ++.+--...++. ++.++
T Consensus 68 ~p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q~--~d~~~-~~~~tk~~~~v~--~~~~~ 139 (589)
T 2pgn_A 68 RSAAVGAWHCVGNLLL---HAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQ--VPWQS-FTPIARSTQRVE--RLDKV 139 (589)
T ss_dssp SCCEEEEEEGGGGGGC---HHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSSC--CCGGG-GTTTSSEEEECC--SGGGH
T ss_pred CCEEEEEecCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCCCCcccc--cChhh-ccccEEEEeecC--CHHHH
Confidence 3457888889998875 568999999999999998764322 111101222 24444 555544455554 66788
Q ss_pred HHHHHHHHHHHHccC-CCEEEEEEE
Q 013928 302 REVAKEAIERARRGE-GPTLVECET 325 (434)
Q Consensus 302 ~~a~~~Al~~ar~~~-gP~lIev~t 325 (434)
...+.+|+..+..++ ||+.|++-.
T Consensus 140 ~~~i~~A~~~A~~~~~GPV~l~iP~ 164 (589)
T 2pgn_A 140 GEAIHEAFRVAEGHPAGPAYVDIPF 164 (589)
T ss_dssp HHHHHHHHHHHTSSSCCEEEEEEET
T ss_pred HHHHHHHHHHHhcCCCccEEEEeCH
Confidence 889999999888776 999999854
No 48
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=92.89 E-value=0.37 Score=50.70 Aligned_cols=97 Identities=16% Similarity=0.121 Sum_probs=66.1
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
-.+++|..|=|+++. .-++..|..-+.|+|+|+-+-....-.....|.. .|...+++.+-....++. +++++..
T Consensus 67 p~v~~~TsGpG~~N~---~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~Q~~-~d~~~~~~~~tk~~~~v~--~~~~~~~ 140 (563)
T 2uz1_A 67 LGVALVTAGGGFTNA---VTPIANAWLDRTPVLFLTGSGALRDDETNTLQAG-IDQVAMAAPITKWAHRVM--ATEHIPR 140 (563)
T ss_dssp CEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTSCCTTCC-CCHHHHHGGGCSEEEECC--CGGGHHH
T ss_pred CEEEEEccCccHHHH---HHHHHHHHhcCCCEEEEeCCCCcccCCchhhhhh-ccHHHHhhhhhceEEEcC--CHHHHHH
Confidence 345666778888775 5578889999999999987654221111112220 356666666665566665 6668888
Q ss_pred HHHHHHHHHHccC-CCEEEEEEEe
Q 013928 304 VAKEAIERARRGE-GPTLVECETY 326 (434)
Q Consensus 304 a~~~Al~~ar~~~-gP~lIev~t~ 326 (434)
.+.+|+..+..++ ||+.|++-..
T Consensus 141 ~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 141 LVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp HHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred HHHHHHHHhcCCCCceEEEEeCHH
Confidence 9999999998875 9999998543
No 49
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=92.77 E-value=0.34 Score=51.33 Aligned_cols=107 Identities=23% Similarity=0.217 Sum_probs=71.4
Q ss_pred hhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhh
Q 013928 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK 281 (434)
Q Consensus 202 p~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~ 281 (434)
-+|.|.|.+. +.-.+++|..|=|+++. .-++..|..-+.|+|+|+-+-....-.....| ..|...
T Consensus 64 ~~A~Gyar~t----------g~p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~g~~~~Q--~~d~~~ 128 (590)
T 1ybh_A 64 FAAEGYARSS----------GKPGICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMIGTDAFQ--ETPIVE 128 (590)
T ss_dssp HHHHHHHHHH----------SSCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTTTCTT--CCCHHH
T ss_pred HHHHHHHHHH----------CCCEEEEeccCchHHHH---HHHHHHHHhhCCCEEEEeCcCCccccCCCccc--ccCHHH
Confidence 3466666552 33456777778887765 56888999999999998865432111111112 235566
Q ss_pred ccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccC-CCEEEEEEE
Q 013928 282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECET 325 (434)
Q Consensus 282 ~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~-gP~lIev~t 325 (434)
+++.+--...+|. +++++...+++|++.+..++ ||+.|++-.
T Consensus 129 ~~~~~~k~~~~v~--~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~ 171 (590)
T 1ybh_A 129 VTRSITKHNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDVPK 171 (590)
T ss_dssp HHGGGSSEEEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred HHHHHhCeEEecC--CHHHHHHHHHHHHHHHhhCCCceEEEEeCc
Confidence 6666655556664 66789999999999888764 899999854
No 50
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=92.59 E-value=0.33 Score=51.21 Aligned_cols=96 Identities=10% Similarity=0.099 Sum_probs=66.0
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccc-ccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS-HLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~-~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~ 302 (434)
-.+++|..|=|.++. .-++..|..-+.|+|+|.-+.....-.. ...| ..|...+++.+--...++. ++.++.
T Consensus 74 p~v~~~TsGpG~~N~---~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q--~~d~~~~~~~~~k~~~~v~--~~~~~~ 146 (573)
T 2iht_A 74 PQACWATLGPGMTNL---STGIATSVLDRSPVIALAAQSESHDIFPNDTHQ--CLDSVAIVAPMSKYAVELQ--RPHEIT 146 (573)
T ss_dssp CEEEEECTTHHHHHH---HHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTT--CCCHHHHHGGGSSEEEECC--SGGGHH
T ss_pred CEEEEEccCchHHHH---HHHHHHHHhhCCCEEEEcccCcccccCCcCccc--cCCHHHHHHhHhhEEEEcC--CHHHHH
Confidence 345667778887764 5578889999999999987654222111 1122 2356666666655566664 566888
Q ss_pred HHHHHHHHHHHccC-CCEEEEEEEe
Q 013928 303 EVAKEAIERARRGE-GPTLVECETY 326 (434)
Q Consensus 303 ~a~~~Al~~ar~~~-gP~lIev~t~ 326 (434)
..+.+|++.+..++ ||+.|++-..
T Consensus 147 ~~i~~A~~~A~~~~~GPV~l~iP~d 171 (573)
T 2iht_A 147 DLVDSAVNAAMTEPVGPSFISLPVD 171 (573)
T ss_dssp HHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred HHHHHHHHHHhcCCCceEEEEecch
Confidence 89999999888875 9999999654
No 51
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=92.58 E-value=0.35 Score=50.97 Aligned_cols=96 Identities=18% Similarity=0.092 Sum_probs=64.8
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
-.+++|..|=|+++. .-++..|..-+.|+|+|+-+-....-.....| ..|...+++.+-....+|. ++.++..
T Consensus 74 p~v~~~TsGpG~~N~---~~~l~~A~~~~vPll~itg~~~~~~~~~~~~Q--~~d~~~~~~~~tk~~~~v~--~~~~~~~ 146 (566)
T 1ozh_A 74 AGVALVTSGPGCSNL---ITGMATANSEGDPVVALGGAVKRADKAKQVHQ--SMDTVAMFSPVTKYAIEVT--APDALAE 146 (566)
T ss_dssp CEEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGCSEEEECC--SGGGHHH
T ss_pred CEEEEEccChHHHHH---HHHHHHHHhcCCCEEEEeCCCccccCCCCccc--ccCHHHHHHHHhheEEEcC--CHHHHHH
Confidence 345666678888875 56788888999999999876532211111122 2356666776666666665 5668888
Q ss_pred HHHHHHHHHHccC-CCEEEEEEEe
Q 013928 304 VAKEAIERARRGE-GPTLVECETY 326 (434)
Q Consensus 304 a~~~Al~~ar~~~-gP~lIev~t~ 326 (434)
.+++|+..+..++ ||+.|++-..
T Consensus 147 ~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 147 VVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp HHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHHHHhcCCCCeEEEEeChh
Confidence 8999999888874 9999998543
No 52
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=92.18 E-value=0.51 Score=49.47 Aligned_cols=94 Identities=14% Similarity=0.024 Sum_probs=65.0
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~ 302 (434)
-.+++|..|=|+++. .-++..|..-+.|+|+|.-+-.. .++. ...| ..|...+++.+--...++. +++++.
T Consensus 67 ~~v~~~TsGpG~~N~---~~gi~~A~~~~vPvl~itg~~~~~~~~~-~~~Q--~~d~~~~~~~~tk~~~~v~--~~~~~~ 138 (549)
T 3eya_A 67 LAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSEIGS-GYFQ--ETHPQELFRECSHYCELVS--SPEQIP 138 (549)
T ss_dssp CEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEESCGGGTTS-CCTT--CCCHHHHTSTTCSEEEECC--SGGGHH
T ss_pred CEEEEeCCCCcHhhh---HHHHHHHHhhCCCEEEEeCCCchhhcCC-CCCC--ccCHHHHHhhhhheEEEeC--CHHHHH
Confidence 456677778888875 56889999999999998865321 1111 1112 2355666666655556664 566788
Q ss_pred HHHHHHHHHHHccCCCEEEEEEE
Q 013928 303 EVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 303 ~a~~~Al~~ar~~~gP~lIev~t 325 (434)
..+.+|+..+....||+.|++-.
T Consensus 139 ~~i~~A~~~A~~~~GPV~l~iP~ 161 (549)
T 3eya_A 139 QVLAIAMRKAVLNRGVSVVVLPG 161 (549)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEH
T ss_pred HHHHHHHHHHhhCCCCEEEEeCh
Confidence 88889998888888999999853
No 53
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=92.03 E-value=0.69 Score=48.63 Aligned_cols=98 Identities=13% Similarity=0.118 Sum_probs=66.3
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccC-cccc--ccc---ccCchhhhccccCCCcEEEEeCCC
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSH--LRA---TSDPQIYKKGPAFGMPGFHVDGMD 297 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~i-s~~~--~~~---~~~~d~~~~a~a~Gi~~~~VdG~D 297 (434)
..++++..|=|+++. .-++..|..-+.|+|+|+-+-.... +... ... ....|...+++.+-....+|. +
T Consensus 66 ~~v~~~TsGpG~~N~---~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~--~ 140 (568)
T 2wvg_A 66 AAAAVVTYSVGALSA---FDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIY--T 140 (568)
T ss_dssp CEEEEECTTTTHHHH---HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCEEEEC--S
T ss_pred CeEEEEeCCCCHHHH---HHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeEEEEeC--C
Confidence 456677778887764 5578889999999999987653221 1110 000 011256677777766677775 5
Q ss_pred HHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 298 VLKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 298 ~~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
++++...+.+|++.+..+.||+.|++-..
T Consensus 141 ~~~~~~~l~~A~~~A~~~~GPV~l~iP~d 169 (568)
T 2wvg_A 141 PEEAPAKIDHVIKTALREKKPVYLEIACN 169 (568)
T ss_dssp GGGHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 56777888888888888889999999654
No 54
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=91.99 E-value=0.18 Score=51.07 Aligned_cols=109 Identities=14% Similarity=0.117 Sum_probs=61.0
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCch-
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ- 278 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d- 278 (434)
.+.+|+|++++ + .+.++...|.|-..+ .+.|..++...+|+|+++-+.. +.++....+....|
T Consensus 76 a~~~a~Gaa~a-----------G-~r~~~~ts~~G~~~~---~d~l~~aa~~~~P~Vi~~~~~~-~~~~g~~~~~~~sd~ 139 (395)
T 1yd7_A 76 SIAAAIGASWA-----------G-AKAMTATSGPGFSLM---QENIGYAVMTETPVVIVDVQRS-GPSTGQPTLPAQGDI 139 (395)
T ss_dssp HHHHHHHHHHT-----------T-CCEEEEEETTHHHHH---TTTCC----CCCCEEEEEEC------------------
T ss_pred HHHHHHHHHHh-----------C-CcEEEEeCchHHHHH---HHHHHHHHhcCCCEEEEEeeCC-CCCCCCCcccchhHH
Confidence 45567777776 2 456777889987653 4556667788999888887664 22211011110111
Q ss_pred hhhcccc---CCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 279 IYKKGPA---FGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 279 ~~~~a~a---~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
+..+... +|++++.. .++.++.+-+..|++.+.+.+.|+++....+
T Consensus 140 ~~~~~~~~g~~g~~vl~p--~~~qea~~l~~~A~~lA~~~~~PVi~~~~~~ 188 (395)
T 1yd7_A 140 MQAIWGTHGDHSLIVLSP--STVQEAFDFTIRAFNLSEKYRTPVILLTDAE 188 (395)
T ss_dssp ---------CCCCEEECC--CSHHHHHHHHHHHHHHHHHHTSEEEEEECHH
T ss_pred HHHHhccCCCcceEEEeC--CCHHHHHHHHHHHHHHHHHHCCCEEEEcchh
Confidence 1222222 35665554 4788999999999998888889999987654
No 55
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=91.48 E-value=0.64 Score=50.32 Aligned_cols=106 Identities=22% Similarity=0.138 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhh
Q 013928 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK 281 (434)
Q Consensus 202 p~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~ 281 (434)
-+|.|.|.+. +.-.+++|..|=|+++. .-++..|..-++|+|+|+-+-....-.....| ..|...
T Consensus 134 ~aAdGyAr~t----------Gkpgvv~~TsGpG~~N~---~~gia~A~~d~vPllvItG~~~~~~~g~~a~Q--~~Dq~~ 198 (677)
T 1t9b_A 134 HMAEGYARAS----------GKPGVVLVTSGPGATNV---VTPMADAFADGIPMVVFTGQVPTSAIGTDAFQ--EADVVG 198 (677)
T ss_dssp HHHHHHHHHH----------SSCEEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTTTSCCTT--CCCHHH
T ss_pred HHHHHHHHHH----------CCCEEEEECCChHHHHH---HHHHHHHHHcCCCEEEEeCCCChhhcCCCCcc--ccCHHH
Confidence 3466666552 33456777788888874 55788888999999999865432111111112 235555
Q ss_pred ccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHcc-CCCEEEEEE
Q 013928 282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECE 324 (434)
Q Consensus 282 ~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~-~gP~lIev~ 324 (434)
+++.+--...+|. ++.++...+.+|++.+..+ .||+.|++-
T Consensus 199 i~~~~tk~~~~v~--~~~~i~~~i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 199 ISRSCTKWNVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp HTGGGSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HhhhheeEEEEcC--CHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence 6665555555664 6678999999999988876 599999996
No 56
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=91.11 E-value=0.87 Score=48.37 Aligned_cols=93 Identities=16% Similarity=0.080 Sum_probs=62.0
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~ 302 (434)
-.+++|..|=|+++. .-++..|..-+.|+|+|+-+-. ..++.. ..| ..|...+++.+-....+|. ++.++.
T Consensus 76 ~gv~~~TsGpG~~N~---~~gia~A~~~~vPvl~itG~~~~~~~~~~-~~Q--~~d~~~~~~~~tk~~~~v~--~~~~~~ 147 (603)
T 4feg_A 76 IGVCFGSAGPGGTHL---MNGLYDAREDHVPVLALIGQFGTTGMNMD-TFQ--EMNENPIYADVADYNVTAV--NAATLP 147 (603)
T ss_dssp CEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTTTTSC-CTT--CCCCGGGGTTTCSEEEECC--CSTTHH
T ss_pred ceEEEecCCchHHHH---HHHHHHHHHcCCCEEEEecCCcccccCCC-ccc--cccHHHHhhhhceEEEEcC--CHHHHH
Confidence 346667778888875 5688899999999999885432 111111 112 2345566666655566665 344677
Q ss_pred HHHHHHHHHHHccCCCEEEEEE
Q 013928 303 EVAKEAIERARRGEGPTLVECE 324 (434)
Q Consensus 303 ~a~~~Al~~ar~~~gP~lIev~ 324 (434)
..+.+|+..+....||+.|++-
T Consensus 148 ~~i~~A~~~A~~~~GPV~l~iP 169 (603)
T 4feg_A 148 HVIDEAIRRAYAHQGVAVVQIP 169 (603)
T ss_dssp HHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEeC
Confidence 7777888777777899999984
No 57
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=91.07 E-value=0.98 Score=47.43 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=64.0
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc-Ccccc--ccc---ccCchhhhccccCCCcEEEEeCCC
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSH--LRA---TSDPQIYKKGPAFGMPGFHVDGMD 297 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~-is~~~--~~~---~~~~d~~~~a~a~Gi~~~~VdG~D 297 (434)
..++++..|=|+++. .-++..|...+.|+|+|+-+-... .+... ... ....|...+++.+-....++..
T Consensus 66 ~~v~~~TsGpG~~N~---~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~-- 140 (566)
T 2vbi_A 66 AAAAVVTFSVGAISA---MNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESITD-- 140 (566)
T ss_dssp CEEEEECTTTTHHHH---HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEEEEECS--
T ss_pred CeEEEEeCCCCHHHH---HHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEEEEeCC--
Confidence 445666668887763 557778999999999998754321 11110 000 0112566777777666777763
Q ss_pred HHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 298 VLKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 298 ~~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
+.++...+.+|+..+..+.||+.|++-..
T Consensus 141 ~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 169 (566)
T 2vbi_A 141 AHSAPAKIDHVIRTALRERKPAYLDIACN 169 (566)
T ss_dssp SSSHHHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 34666778888888887789999998643
No 58
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=91.07 E-value=0.64 Score=48.93 Aligned_cols=98 Identities=15% Similarity=0.093 Sum_probs=61.3
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc-Ccccc--cccccCch-hhhccccCCCcEEEEeCCCHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSH--LRATSDPQ-IYKKGPAFGMPGFHVDGMDVL 299 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~-is~~~--~~~~~~~d-~~~~a~a~Gi~~~~VdG~D~~ 299 (434)
-.+++|..|=|+++. .-++..|..-+.|+|+|+-+-... ++... ..+....| ...+++.+-....++. ++.
T Consensus 85 p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~~v~--~~~ 159 (565)
T 2nxw_A 85 LGVAAVTYGAGAFNM---VNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQARLD--DPA 159 (565)
T ss_dssp CEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEEECC--CTT
T ss_pred CeEEEECCCCCHHHH---HHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEEEeC--CHH
Confidence 345666678887764 568888999999999998764211 11110 00111122 4566666655666665 444
Q ss_pred HHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 300 KVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 300 av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
++...+.+|+..+....||+.|++-..
T Consensus 160 ~~~~~i~~A~~~A~~~~GPV~l~iP~D 186 (565)
T 2nxw_A 160 KAPAEIARVLGAARAQSRPVYLEIPRN 186 (565)
T ss_dssp THHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECChh
Confidence 666777778877776789999999743
No 59
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=90.12 E-value=0.52 Score=49.96 Aligned_cols=92 Identities=15% Similarity=0.011 Sum_probs=61.8
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a 304 (434)
.++++..|=|.++. .-++..|..-+.|+|+|+-+-..........|. .|...+++.+--....+. ++.++.+.
T Consensus 70 ~v~~~tsGpG~~N~---~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q~--~d~~~~~~~~tk~~~~v~--~~~~~~~~ 142 (590)
T 1v5e_A 70 GVTVGSGGPGASHL---INGLYDAAMDNIPVVAILGSRPQRELNMDAFQE--LNQNPMYDHIAVYNRRVA--YAEQLPKL 142 (590)
T ss_dssp CEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTC--CCCHHHHHTTCSEEEECC--SGGGHHHH
T ss_pred EEEEeCcChHHHHH---HHHHHHHHhcCCCEEEEcCCCCcccCCCCcccc--cCHHHHHHhhccEEEEeC--CHHHHHHH
Confidence 45666668787764 557888889999999998765422211111222 345555665544455554 66788889
Q ss_pred HHHHHHHHHccC-CCEEEEEE
Q 013928 305 AKEAIERARRGE-GPTLVECE 324 (434)
Q Consensus 305 ~~~Al~~ar~~~-gP~lIev~ 324 (434)
+++|++.+..++ ||+.| +-
T Consensus 143 i~~A~~~A~~~~~GPV~l-iP 162 (590)
T 1v5e_A 143 VDEAARMAIAKRGVAVLE-VP 162 (590)
T ss_dssp HHHHHHHHHHTTSEEEEE-EE
T ss_pred HHHHHHHHhcCCCceEEE-Ec
Confidence 999999998877 99999 64
No 60
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=89.51 E-value=0.91 Score=47.21 Aligned_cols=97 Identities=14% Similarity=0.048 Sum_probs=62.6
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~ 303 (434)
..+++|..|=|.++. .-++..|...+.|+|+|.-+-....-.....|. ..|...+++.+--...++. +++++..
T Consensus 64 ~~v~~~tsGpG~~N~---~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~-~~d~~~~~~~~~k~~~~v~--~~~~~~~ 137 (528)
T 1q6z_A 64 PAFINLHSAAGTGNA---MGALSNAWNSHSPLIVTAGQQTRAMIGVEALLT-NVDAANLPRPLVKWSYEPA--SAAEVPH 137 (528)
T ss_dssp CEEEEEEHHHHHHHT---HHHHHHHHHTTCCEEEEEEECCHHHHTTTCTTC-CTTGGGSSTTSCSCEECCS--SGGGHHH
T ss_pred CEEEEEcCChHHHHH---HHHHHHHhhcCCCEEEEeCCCcccccCCCcccc-cccHHHHHHHhhHhhhcCC--CHHHHHH
Confidence 345666778888764 557888999999999997654311100011121 1255666665544455554 5567778
Q ss_pred HHHHHHHHHHccC-CCEEEEEEEe
Q 013928 304 VAKEAIERARRGE-GPTLVECETY 326 (434)
Q Consensus 304 a~~~Al~~ar~~~-gP~lIev~t~ 326 (434)
.+.+|+..+..++ ||+.|++-..
T Consensus 138 ~i~~A~~~a~~~~~GPV~l~iP~d 161 (528)
T 1q6z_A 138 AMSRAIHMASMAPQGPVYLSVPYD 161 (528)
T ss_dssp HHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred HHHHHHHHHhcCCCCcEEEEechh
Confidence 8888998888764 7999999654
No 61
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=89.44 E-value=1.4 Score=46.78 Aligned_cols=94 Identities=20% Similarity=0.160 Sum_probs=63.9
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a 304 (434)
.++++..|=|+++. .-++..|..-+.|+|+|+-+-..........| ..|...+++.+--...++. ++.++...
T Consensus 93 ~v~~~TsGpG~~N~---~~~l~~A~~~~vPlvvItg~~p~~~~~~~~~Q--~~d~~~~~~~~tk~~~~v~--~~~~i~~~ 165 (616)
T 2pan_A 93 GVCLGTSGPAGTDM---ITALYSASADSIPILCITGQAPRARLHKEDFQ--AVDIEAIAKPVSKMAVTVR--EAALVPRV 165 (616)
T ss_dssp EEEEECSTHHHHTS---HHHHHHHHHTTCCEEEEEEECCGGGTTTTCTT--CCCHHHHHGGGSSEEEECC--SGGGHHHH
T ss_pred eEEEeCCCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCccccc--ccCHHHHHHHHHHhhcccC--CHHHHHHH
Confidence 34556778887764 55788899999999998876542221111112 2355666666655566664 56788899
Q ss_pred HHHHHHHHHcc-CCCEEEEEEE
Q 013928 305 AKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 305 ~~~Al~~ar~~-~gP~lIev~t 325 (434)
+++|++.+..+ .||+.|++-.
T Consensus 166 l~~A~~~A~~~r~GPV~l~iP~ 187 (616)
T 2pan_A 166 LQQAFHLMRSGRPGPVLVDLPF 187 (616)
T ss_dssp HHHHHHHHHSSSCCCEEEEEEH
T ss_pred HHHHHHHHhcCCCceEEEEcch
Confidence 99999888876 4999999854
No 62
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=89.22 E-value=1.4 Score=46.61 Aligned_cols=98 Identities=13% Similarity=0.046 Sum_probs=63.6
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCH-----
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDV----- 298 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~----- 298 (434)
-.+++|..|=|+++. .-++..|..-+.|+|+|.-+-....-.....| ..|...+++.+--...+|...+-
T Consensus 95 pgv~~~TsGpG~~N~---~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q--~~d~~~~~~~~tk~~~~v~~~~~~~~~~ 169 (604)
T 2x7j_A 95 PVLLICTSGTAAANF---YPAVVEAHYSRVPIIVLTADRPHELREVGAPQ--AINQHFLFGNFVKFFTDSALPEESPQML 169 (604)
T ss_dssp CEEEEECSSHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGSSSCCTT--CCCCTTTTGGGSSCEEECCCCCCSHHHH
T ss_pred CEEEEECChhHHHHH---HHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCC--cCcHHHHhhhheeeeeecCCCcccchhH
Confidence 456777778888875 55888999999999999865432111111112 23555566666555666654320
Q ss_pred HHHHHHHHHHHHHHHcc-CCCEEEEEEEe
Q 013928 299 LKVREVAKEAIERARRG-EGPTLVECETY 326 (434)
Q Consensus 299 ~av~~a~~~Al~~ar~~-~gP~lIev~t~ 326 (434)
..+...+++|+..+..+ .||+.|++-..
T Consensus 170 ~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 170 RYIRTLASRAAGEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp HHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred HHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence 12777888888888874 69999999654
No 63
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=88.05 E-value=0.86 Score=47.88 Aligned_cols=95 Identities=15% Similarity=0.175 Sum_probs=63.0
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccC-cc-cccccccCchhhhccccCCCcEEEEeCCCHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GM-SHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 301 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~i-s~-~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av 301 (434)
..+++|..|=|+++. .-++..|..-+.|+|+|.-+-.... +. ....| ..|...+++.+--...+|. ++.++
T Consensus 73 pgv~~~TsGpG~~N~---~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q--~~dq~~~~~~~tk~~~~v~--~~~~~ 145 (568)
T 2c31_A 73 PGVCLTVSAPGFLNG---VTSLAHATTNCFPMILLSGSSEREIVDLQQGDYE--EMDQMNVARPHCKASFRIN--SIKDI 145 (568)
T ss_dssp CEEEEECSHHHHHHH---HHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTT--CCCHHHHSGGGSSEEEECC--SGGGH
T ss_pred CEEEEEcCCccHHHH---HHHHHHHHhcCCCEEEEccCCCccccCCCCCccc--ccCHHHHHHhhhheeeecC--CHHHH
Confidence 346667777777764 5688899999999999986543111 10 01112 2355556666655556664 56678
Q ss_pred HHHHHHHHHHHHcc-CCCEEEEEEE
Q 013928 302 REVAKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 302 ~~a~~~Al~~ar~~-~gP~lIev~t 325 (434)
...+.+|+..+..+ .||+.|++-.
T Consensus 146 ~~~i~~A~~~A~~~~~GPV~l~iP~ 170 (568)
T 2c31_A 146 PIGIARAVRTAVSGRPGGVYVDLPA 170 (568)
T ss_dssp HHHHHHHHHHHHSSSCCEEEEEEET
T ss_pred HHHHHHHHHHhcCCCCceEEEeCCH
Confidence 88899999988874 5999999843
No 64
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=88.05 E-value=0.82 Score=47.98 Aligned_cols=95 Identities=15% Similarity=0.215 Sum_probs=63.1
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccC-cc-cccccccCchhhhccccCCCcEEEEeCCCHHHH
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GM-SHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 301 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~i-s~-~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av 301 (434)
..+++|..|=|+++. .-++..|..-+.|+|+|.-+-.... +. ....| ..|...+++.+-....+|. ++.++
T Consensus 71 pgv~~~TsGpG~~N~---~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q--~~dq~~~~~~~tk~~~~v~--~~~~~ 143 (564)
T 2q28_A 71 PGICLTVSAPGFLNG---LTALANATVNGFPMIMISGSSDRAIVDLQQGDYE--ELDQMNAAKPYAKAAFRVN--QPQDL 143 (564)
T ss_dssp CEEEEECSHHHHHHH---HHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTT--CCCHHHHHGGGSSEEEECC--SGGGH
T ss_pred CEEEEEccCchHHHH---HHHHHHHHhcCCCEEEEeCCCCccccCCCCCccc--cccHHHHHHHhhheeeecC--CHHHH
Confidence 346666677777764 5678889999999999986543211 10 00112 2345556666655566664 56678
Q ss_pred HHHHHHHHHHHHcc-CCCEEEEEEE
Q 013928 302 REVAKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 302 ~~a~~~Al~~ar~~-~gP~lIev~t 325 (434)
...+.+|+..+..+ .||+.|++-.
T Consensus 144 ~~~i~~A~~~A~~~~~GPV~l~iP~ 168 (564)
T 2q28_A 144 GIALARAIRVSVSGRPGGVYLDLPA 168 (564)
T ss_dssp HHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred HHHHHHHHHHHhcCCCceEEEEcCH
Confidence 88899999988874 5999999853
No 65
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=87.52 E-value=2.6 Score=44.41 Aligned_cols=98 Identities=12% Similarity=0.086 Sum_probs=61.7
Q ss_pred CCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc-CcccccccccCchhhhccccCCCcEEEEeC-CCHH
Q 013928 222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDG-MDVL 299 (434)
Q Consensus 222 ~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~-is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG-~D~~ 299 (434)
+.-.+++|..|=|+++. .-++..|..-+.|+|+|.-+-... ++.. ..| ..|...+++.+--...+|.. .+..
T Consensus 73 G~pgv~~~TsGpG~~N~---~~gia~A~~d~vPll~itG~~p~~~~g~~-~~Q--e~d~~~~~~~~tk~~~~v~~~~~~~ 146 (578)
T 3lq1_A 73 KRPVVLLCTSGTAAANY---FPAVAEANLSQIPLIVLTADRPHELRNVG-APQ--AMDQLHLYGSHVKDFTDMALPENSE 146 (578)
T ss_dssp CCCEEEEECSSHHHHTT---HHHHHHHHHTTCCEEEEEEECCGGGTTSS-CTT--CCCCTTTTGGGSSEEEECCCCCCSH
T ss_pred CCCEEEEECCchhhhhh---hHHHHHHHhcCCCeEEEeCCCCHHhhcCC-CCC--CcCHhhHHhhheeeEeecCCCCCch
Confidence 33456777778888875 558889999999999988543211 1111 112 12455555555445566643 3322
Q ss_pred H----HHHHHHHHHHHHHcc-CCCEEEEEEE
Q 013928 300 K----VREVAKEAIERARRG-EGPTLVECET 325 (434)
Q Consensus 300 a----v~~a~~~Al~~ar~~-~gP~lIev~t 325 (434)
+ +..++++|+..+..+ .||+.|++-.
T Consensus 147 ~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~ 177 (578)
T 3lq1_A 147 EMLRYAKWHGSRAVDIAMKTPRGPVHLNFPL 177 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcEEEECcc
Confidence 2 345778888888776 6999999964
No 66
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=87.45 E-value=1.7 Score=46.41 Aligned_cols=89 Identities=15% Similarity=0.053 Sum_probs=55.4
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEE-eCCCHHHHHH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVRE 303 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~ 303 (434)
.++++.++++... .++.+.+++..++|+++++...+++.+..-..+.+..|++-.. .+|.++| .-.|+.++..
T Consensus 381 ~~~~~~f~~Fl~~---a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l~---~iP~l~V~~P~d~~e~~~ 454 (616)
T 3mos_A 381 VPFCSTFAAFFTR---AFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFR---SVPTSTVFYPSDGVATEK 454 (616)
T ss_dssp EEEEEEEGGGGGG---GHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGGCBSSHHHHHH---TSTTEEEECCCSHHHHHH
T ss_pred CEEEEehHHHHHH---HHHHHHHHHHhCCCeEEEEECCCccccCCCCcccCHHHHHHhc---CCCCCEEEecCCHHHHHH
Confidence 4566789998642 3788888899999999988776654442111112233333222 3566654 3457878877
Q ss_pred HHHHHHHHHHccCCCEEEEE
Q 013928 304 VAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 304 a~~~Al~~ar~~~gP~lIev 323 (434)
+++.|+ ..++|++|..
T Consensus 455 ~l~~a~----~~~gp~~ir~ 470 (616)
T 3mos_A 455 AVELAA----NTKGICFIRT 470 (616)
T ss_dssp HHHHHH----TCCSEEEEEC
T ss_pred HHHHHH----hcCCCEEEEE
Confidence 666554 4578987744
No 67
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=87.45 E-value=2.7 Score=45.30 Aligned_cols=101 Identities=20% Similarity=0.123 Sum_probs=61.4
Q ss_pred chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCch
Q 013928 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQ 278 (434)
Q Consensus 201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d 278 (434)
+.+|.|+|+. +.-+++++.+...+.. ..+.+.+++..++||++++.+.+++.+ .+++ | +..|
T Consensus 415 v~~a~GlA~~-----------gG~~P~~~tf~~F~~~---~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tH-q-~~ed 478 (669)
T 2r8o_A 415 TAIANGISLH-----------GGFLPYTSTFLMFVEY---ARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTH-Q-PVEQ 478 (669)
T ss_dssp HHHHHHHHHH-----------SSCEEEEEEEGGGGGT---THHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT-C-CSSH
T ss_pred HHHHHHHHHc-----------CCCeEEEeehHHHHHH---HHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCcc-C-CHHH
Confidence 3566666665 3334555555554431 266788899999999999987776644 2222 2 2333
Q ss_pred hhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 279 IYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 279 ~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
++-.. .+|.++| .-.|..++...++.|++ ..++|++|-.
T Consensus 479 la~lr---~iP~l~V~~Pad~~E~~~~l~~a~~---~~~~Pv~i~~ 518 (669)
T 2r8o_A 479 VASLR---VTPNMSTWRPCDQVESAVAWKYGVE---RQDGPTALIL 518 (669)
T ss_dssp HHHHH---TSTTCEEECCSSHHHHHHHHHHHHH---CSSSCEEEEC
T ss_pred HHHhc---CCCCCEEEecCCHHHHHHHHHHHHH---hCCCcEEEEe
Confidence 33322 3454443 34577888887777764 2368999854
No 68
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=86.96 E-value=2.8 Score=45.08 Aligned_cols=101 Identities=21% Similarity=0.187 Sum_probs=61.6
Q ss_pred chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCch
Q 013928 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQ 278 (434)
Q Consensus 201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d 278 (434)
+++|.|+|+. +.-++++..+.-.+. -.++++.+++..++||++++.+.+++.+ .+++ | +..|
T Consensus 410 ~~~a~GlA~~-----------Gg~~P~~~t~~~F~~---~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tH-q-~~ed 473 (651)
T 2e6k_A 410 GAILNGLNLH-----------GGYRAYGGTFLVFSD---YMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTH-Q-PVEH 473 (651)
T ss_dssp HHHHHHHHHH-----------SSCEEEEEEEGGGGG---GSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT-C-CSSH
T ss_pred HHHHHHHHHc-----------CCCEEEEEeHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCcCcc-c-cHHH
Confidence 3467777766 423556665533322 1366788899999999999888876654 2222 2 2334
Q ss_pred hhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 279 IYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 279 ~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
++-.. .+|.++| .-.|..++...++.|++ ..++|++|-.
T Consensus 474 la~lr---~iP~l~V~~Pad~~E~~~~l~~A~~---~~~~Pv~i~~ 513 (651)
T 2e6k_A 474 LMSLR---AMPNLFVIRPADAYETFYAWLVALR---RKEGPTALVL 513 (651)
T ss_dssp HHHHH---TSTTCEEECCSSHHHHHHHHHHHHH---CCSSCEEEEC
T ss_pred HHHhc---CCCCcEEEecCCHHHHHHHHHHHHH---cCCCCEEEEE
Confidence 33322 3444433 34577888887777764 2268998865
No 69
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=86.10 E-value=3 Score=45.05 Aligned_cols=101 Identities=17% Similarity=0.154 Sum_probs=61.6
Q ss_pred chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCch
Q 013928 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQ 278 (434)
Q Consensus 201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d 278 (434)
+.+|.|+|+. +.-++++.++.+-.. ...+.+.+++..++||+++....+++.+ .+++ .+..|
T Consensus 416 v~~a~GlA~~-----------gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~TH--q~~ed 479 (663)
T 3kom_A 416 AAIMNGLSLY-----------GGIKPYGGTFLVFSD---YSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTH--QPIEH 479 (663)
T ss_dssp HHHHHHHHHH-----------SSCEEEEEEEGGGHH---HHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT--CCSSH
T ss_pred HHHHHHHHHc-----------CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCc--CCHHH
Confidence 4566777765 334566666655442 1357788889999999999877765544 3332 22334
Q ss_pred hhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 279 IYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 279 ~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
++-.. .+|.++| .-.|..++..+++.|++ ..++|++|-.
T Consensus 480 ~a~lr---~iPnl~V~~Pad~~e~~~~l~~A~~---~~~~Pv~ir~ 519 (663)
T 3kom_A 480 VPSLR---LIPNLSVWRPADTIETMIAWKEAVK---SKDTPSVMVL 519 (663)
T ss_dssp HHHHH---TSTTCEEECCCSHHHHHHHHHHHHH---CSSCCEEEEC
T ss_pred HHHHh---cCCCcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEc
Confidence 33222 4555544 33577787777776653 2579999853
No 70
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=84.99 E-value=3.2 Score=44.89 Aligned_cols=101 Identities=14% Similarity=0.157 Sum_probs=60.8
Q ss_pred chhhHHHHHHHHHHHhhhhhcCCCc-eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCc
Q 013928 201 IPVATGAAFTSKYRREVLKEADCDH-VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDP 277 (434)
Q Consensus 201 lp~AvGaA~A~k~~~~~~~~~~~d~-~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~ 277 (434)
+++|.|+|+. +.-+ +++..+.+-+. -..+++.+++..++||+|++...+++.+ .+++ | +..
T Consensus 422 vg~a~GlA~~-----------Gg~~~P~~~~f~~F~~---~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tH-q-~~e 485 (680)
T 1gpu_A 422 GAIMNGISAF-----------GANYKPYGGTFLNFVS---YAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTH-Q-PIE 485 (680)
T ss_dssp HHHHHHHHHH-----------CTTCEEEEEEEHHHHG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT-C-CSS
T ss_pred HHHHHHHHhc-----------CCCceEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCcc-C-CHH
Confidence 3467777766 4234 45555543332 2366788899999999999877776544 2332 2 233
Q ss_pred hhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 278 QIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 278 d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
|++-.. .+|.++| .-.|+.++...++.|++ ..++|++|-.
T Consensus 486 dla~lr---~iP~l~V~~Pad~~e~~~~l~~A~~---~~~~Pv~i~~ 526 (680)
T 1gpu_A 486 TLAHFR---SLPNIQVWRPADGNEVSAAYKNSLE---SKHTPSIIAL 526 (680)
T ss_dssp HHHHHH---TSSSCEEECCCSHHHHHHHHHHHHH---CSSCCEEEEC
T ss_pred HHHHhc---CCCCCEEEecCCHHHHHHHHHHHHH---hCCCcEEEEe
Confidence 333222 3455544 34577788887777764 2378999853
No 71
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=84.48 E-value=2 Score=45.02 Aligned_cols=96 Identities=8% Similarity=0.056 Sum_probs=60.6
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccC---cccccc---cccCchhhhccccCCCcEEEEeCCCH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI---GMSHLR---ATSDPQIYKKGPAFGMPGFHVDGMDV 298 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~i---s~~~~~---~~~~~d~~~~a~a~Gi~~~~VdG~D~ 298 (434)
.+++|..|=|+++. .-++..|..-+.|+|+|.-+-.... ....+. .....+...+++.+--...++. ++
T Consensus 68 ~v~~~TsGpG~~N~---~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~~~~~~~k~~~~v~--~~ 142 (563)
T 2vk8_A 68 SCIITTFGVGELSA---LNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMSANISETTAMIT--DI 142 (563)
T ss_dssp EEEEEETTHHHHHH---HHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHHHHHHTTCSEEEECC--CT
T ss_pred cEEEEcCCCcHHHH---HHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchHHHHHHhhhhEEEEEEeC--CH
Confidence 46677778888763 5578889999999999986543111 000000 0011245566666666666665 44
Q ss_pred HHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928 299 LKVREVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 299 ~av~~a~~~Al~~ar~~~gP~lIev~t 325 (434)
.++.+.+.+|+..+....||+.|++-.
T Consensus 143 ~~~~~~i~~A~~~A~~~~GPV~l~iP~ 169 (563)
T 2vk8_A 143 ATAPAEIDRCIRTTYVTQRPVYLGLPA 169 (563)
T ss_dssp TTHHHHHHHHHHHHHHHTSCEEEEEET
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEech
Confidence 456667777777777667999999854
No 72
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=84.35 E-value=3.3 Score=44.44 Aligned_cols=100 Identities=16% Similarity=0.086 Sum_probs=61.1
Q ss_pred chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCch
Q 013928 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQ 278 (434)
Q Consensus 201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d 278 (434)
+.+|.|+|+. +.-++++.++.+ |.+ ..++.+.+++..++||+|+....+++.+ .+++ .+..|
T Consensus 395 v~~a~GlA~~-----------gG~~P~~~~f~~--F~~-~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~TH--q~~ed 458 (632)
T 3l84_A 395 AAINNAFARY-----------GIFLPFSATFFI--FSE-YLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTH--QPIEQ 458 (632)
T ss_dssp HHHHHHHHHH-----------SSCEEEEEEEGG--GHH-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGG--SCSSH
T ss_pred HHHHHHHHHc-----------CCCEEEEEecHH--HHH-HHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCC--CCHhH
Confidence 4556676665 334556666544 332 2366778889999999999877765543 3332 22334
Q ss_pred hhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 279 IYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 279 ~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
++-.. .+|.++| .-.|..++..+++.|++ .++|++|-.
T Consensus 459 ~a~lr---~iP~l~V~~P~d~~e~~~~l~~A~~----~~~Pv~ir~ 497 (632)
T 3l84_A 459 LSTFR---AMPNFLTFRPADGVENVKAWQIALN----ADIPSAFVL 497 (632)
T ss_dssp HHHHH---HSSSCEEECCSSHHHHHHHHHHHHH----CSSCEEEEC
T ss_pred HHHHh---cCCCCEEEecCCHHHHHHHHHHHHh----CCCCEEEEE
Confidence 33322 3455443 33577788887777764 678998854
No 73
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=82.80 E-value=2.9 Score=43.83 Aligned_cols=97 Identities=12% Similarity=0.048 Sum_probs=61.4
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc-c--ccc--ccc-cCchhhhccccCCCcEEEEeCCC
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG-M--SHL--RAT-SDPQIYKKGPAFGMPGFHVDGMD 297 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is-~--~~~--~~~-~~~d~~~~a~a~Gi~~~~VdG~D 297 (434)
..++++..|=|+++. .-++..|..-+.|+|+|+-+...... . ... .+. ...+...+++.+-....++..
T Consensus 88 ~~v~~~tsGpG~~N~---~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~-- 162 (570)
T 2vbf_A 88 AAAFLTTFGVGELSA---INGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA-- 162 (570)
T ss_dssp CEEEEEETTHHHHHH---HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT--
T ss_pred CeEEEEcCCCCHHHH---HHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc--
Confidence 446677778887763 55788899999999999866542111 0 000 000 011244556666666667654
Q ss_pred HHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 298 VLKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 298 ~~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
.++...+++|++.+..+.||+.|++-..
T Consensus 163 -~~~~~~l~~A~~~A~~~~GPV~l~iP~d 190 (570)
T 2vbf_A 163 -ENATYEIDRVLSQLLKERKPVYINLPVD 190 (570)
T ss_dssp -TTHHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred -ccHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence 4666777778877777779999999643
No 74
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=82.25 E-value=2.7 Score=43.77 Aligned_cols=107 Identities=12% Similarity=0.046 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc---ccccc--c-cc
Q 013928 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG---MSHLR--A-TS 275 (434)
Q Consensus 202 p~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is---~~~~~--~-~~ 275 (434)
-+|.|.|.+. + ..++++..|=|.++. .-++..|..-+.|+|+|+-+-..... ..... . ..
T Consensus 57 ~~A~Gyar~t----------g-~~v~~~tsGpG~~N~---~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~ 122 (552)
T 1ovm_A 57 YAADGYARCK----------G-FAALLTTFGVGELSA---MNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGE 122 (552)
T ss_dssp HHHHHHHHHH----------S-CEEEEEETTHHHHHT---HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSC
T ss_pred HHHHHHHHhh----------C-CcEEEEccCCcHHHH---HHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCc
Confidence 3466666652 3 336777788888764 55888999999999999865431110 00000 0 01
Q ss_pred CchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928 276 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 276 ~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t 325 (434)
..+...+++.+-....+|.. .++...+++|++.+....||+.|++-.
T Consensus 123 ~q~~~~~~~~~tk~~~~v~~---~~~~~~i~~A~~~a~~~~GPV~l~iP~ 169 (552)
T 1ovm_A 123 FRHFYHMSEPITVAQAVLTE---QNACYEIDRVLTTMLRERRPGYLMLPA 169 (552)
T ss_dssp CSHHHHHTGGGCSEEEECCT---TTHHHHHHHHHHHHHHHTCCEEEEEEH
T ss_pred HHHHHHHHHhheeEEEEEcc---ccHHHHHHHHHHHHHhCCCCEEEEeeh
Confidence 12345566666666677764 356666777777776667999999954
No 75
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=82.03 E-value=3.7 Score=44.30 Aligned_cols=101 Identities=15% Similarity=0.100 Sum_probs=61.8
Q ss_pred chhhHHHHHHHHHHHhhhhhcC-CCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCc
Q 013928 201 IPVATGAAFTSKYRREVLKEAD-CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDP 277 (434)
Q Consensus 201 lp~AvGaA~A~k~~~~~~~~~~-~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~ 277 (434)
+++|.|+|+. + .-++++.++.+.+. -.++++..++..++||++++...+++.+ .+++ | +..
T Consensus 427 v~~a~GlA~~-----------G~~~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tH-q-~~e 490 (675)
T 1itz_A 427 GAICNGIALH-----------SPGFVPYCATFFVFTD---YMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTH-Q-PIE 490 (675)
T ss_dssp HHHHHHHHTT-----------CTTCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT-C-CSS
T ss_pred HHHHHHHHhc-----------CCCCEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCCCCc-C-cHH
Confidence 3456666655 3 24556666655443 2367788899999999999977765543 2222 2 233
Q ss_pred hhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 278 QIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 278 d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
|++-. -.+|.++| .-.|..++...++.|++ ..++|++|-.
T Consensus 491 dla~l---r~iP~l~V~~Pad~~e~~~~l~~a~~---~~~~Pv~i~~ 531 (675)
T 1itz_A 491 HLVSF---RAMPNILMLRPADGNETAGAYKVAVL---NRKRPSILAL 531 (675)
T ss_dssp HHHHH---HSSSSCEEECCCSHHHHHHHHHHHHH---CTTSCEEEEE
T ss_pred HHHHh---ccCCCeEEEECCCHHHHHHHHHHHHH---hCCCcEEEEe
Confidence 33322 23565544 34578888887777764 2378999854
No 76
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=81.79 E-value=6.8 Score=40.91 Aligned_cols=96 Identities=9% Similarity=0.020 Sum_probs=59.7
Q ss_pred CCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCC---
Q 013928 222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMD--- 297 (434)
Q Consensus 222 ~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D--- 297 (434)
+.-.+++|..|=|+++. .-++..|..-+.|+|+|.-+-.. .++.. ..| ..|...+++.+--....|...+
T Consensus 70 G~pgv~~~TsGpG~~N~---~~gia~A~~d~vPll~itG~~~~~~~g~~-~~Q--~~d~~~~~~~~tk~~~~v~~~~~~~ 143 (556)
T 3hww_A 70 KQPVAVIVTSGTAVANL---YPALIEAGLTGEKLILLTADRPPELIDCG-ANQ--AIRQPGMFASHPTHSISLPRPTQDI 143 (556)
T ss_dssp CSCEEEEECSSHHHHTT---HHHHHHHHHHCCCEEEEEEECCGGGSSSS-CTT--CCCCTTTTTTCSSEEEECCCCCTTS
T ss_pred CCCEEEEECCCcHHHhh---hHHHHHHHHhCCCeEEEeCCCCHHHhccC-CCc--cccHHHHHhhheeEEEecCCCcccc
Confidence 33456777788888875 55888999999999998854431 12211 122 2345555555544555664332
Q ss_pred -HHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928 298 -VLKVREVAKEAIERARRGEGPTLVECET 325 (434)
Q Consensus 298 -~~av~~a~~~Al~~ar~~~gP~lIev~t 325 (434)
...+.+++++|+. ....||+.|++-.
T Consensus 144 ~~~~i~~~i~~A~~--~~r~GPV~i~iP~ 170 (556)
T 3hww_A 144 PARWLVSTIDHALG--TLHAGGVHINCPF 170 (556)
T ss_dssp CHHHHHHHHHHHHH--SCCSSCEEEEEEC
T ss_pred cHHHHHHHHHHHHh--cCCCCCEEEeCCc
Confidence 3457777777772 1235899999964
No 77
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=81.72 E-value=4.5 Score=43.13 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=60.7
Q ss_pred chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCch
Q 013928 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQ 278 (434)
Q Consensus 201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d 278 (434)
+.+|.|+|++ + -++++.++++.. +-.+-+-++.++..++|+++++.+.++ .+ .+++. ...|
T Consensus 374 ~~~a~G~A~~-----------G-~rp~~~~~~~F~--~~a~dqi~~~~a~~~~pvv~~~~~~g~-~g~~G~tH~--~~~d 436 (621)
T 2o1s_A 374 VTFAAGLAIG-----------G-YKPIVAIYSTFL--QRAYDQVLHDVAIQKLPVLFAIDRAGI-VGADGQTHQ--GAFD 436 (621)
T ss_dssp HHHHHHHHHT-----------T-CEEEEEEETTGG--GGGHHHHHHTTTTTTCCCEEEEESCBC-CCTTCGGGC--BCSH
T ss_pred HHHHHHHHHC-----------C-CEEEEEehHhHH--HHHHHHHHHHHHhcCCCEEEEEECCcc-CCCCCCccC--chHH
Confidence 4466677665 2 456777788864 222234577788999999999987764 22 22222 1234
Q ss_pred hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 279 ~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
++-...-=|+.++. -.|+.++...++.|++ ..++|++|-.
T Consensus 437 ~~~~~~iP~l~v~~--P~d~~e~~~~l~~a~~---~~~~Pv~i~~ 476 (621)
T 2o1s_A 437 LSYLRCIPEMVIMT--PSDENECRQMLYTGYH---YNDGPSAVRY 476 (621)
T ss_dssp HHHTTTSTTCEEEC--CSSHHHHHHHHHHHHH---CCSSCEEEEC
T ss_pred HHHHhcCCCCEEEe--cCCHHHHHHHHHHHHH---cCCCCEEEEe
Confidence 33322212444443 4578888888887764 2378998865
No 78
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=81.52 E-value=2.8 Score=44.85 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=58.8
Q ss_pred chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCch
Q 013928 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQ 278 (434)
Q Consensus 201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d 278 (434)
+.+|.|+|++ + -++++.++.+.. +-.+-+-++.++..++||++++.+.++ .+ .+++.+ ..|
T Consensus 377 ~~~a~G~A~~-----------G-~rp~~~~~~~F~--~~a~dqi~~~~a~~~~pvv~~~~~~g~-~g~dG~tH~~--~~d 439 (629)
T 2o1x_A 377 VTTAAGMALQ-----------G-MRPVVAIYSTFL--QRAYDQVLHDVAIEHLNVTFCIDRAGI-VGADGATHNG--VFD 439 (629)
T ss_dssp HHHHHHHHHT-----------T-CEEEEEEEHHHH--GGGHHHHHHTTTTTTCCCEEEEESBBC-CCTTCTTTCB--CSH
T ss_pred HHHHHHHHHc-----------C-CEEEEEecHHHH--HHHHHHHHHHHhhcCCCEEEEEECCcc-CCCCCcccCc--cHH
Confidence 4466677765 2 355666666643 322334567788999999999977664 22 122211 234
Q ss_pred hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 279 ~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
++-...-=|+.++ .-.|+.++...++.|++. ++|++|-.
T Consensus 440 ~a~~r~iP~l~v~--~P~d~~e~~~~~~~a~~~----~~Pv~i~~ 478 (629)
T 2o1x_A 440 LSFLRSIPGVRIG--LPKDAAELRGMLKYAQTH----DGPFAIRY 478 (629)
T ss_dssp HHHTTTSTTCEEE--CCSSHHHHHHHHHHHHHS----SSCEEEEC
T ss_pred HHHHHccCCcEEE--ecCCHHHHHHHHHHHHhC----CCCEEEEe
Confidence 3322221244433 345888888888877753 68999865
No 79
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=81.44 E-value=6.9 Score=42.43 Aligned_cols=74 Identities=23% Similarity=0.265 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCC
Q 013928 242 FECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGP 318 (434)
Q Consensus 242 ~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP 318 (434)
..++.+++..++||+|++...+++.+ .+++ .+..|++-.. .+|.++| .-.|..++..+++.|++ ..++|
T Consensus 467 ~~air~~al~~lpVv~v~~~~gigvG~dG~TH--q~ied~a~lr---~iPnl~V~~Pad~~E~~~~l~~Ai~---~~~~P 538 (690)
T 3m49_A 467 RPAIRLAALMQLPVTYVFTHDSIAVGEDGPTH--EPIEQLAALR---AMPNVSVIRPADGNESVAAWRLALE---STNKP 538 (690)
T ss_dssp HHHHHHHHHHTCCCEEEEECCSGGGCTTCGGG--CCSSHHHHHH---TSTTCEEECCSSHHHHHHHHHHHHH---CSSSC
T ss_pred HHHHHHHHhcCCCcEEEEECCCcCCCCCCCcc--CCHHHHHHHh---cCCCCEEEeeCCHHHHHHHHHHHHH---cCCCC
Confidence 34577889999999999988775444 3332 2233443222 3555543 33577788777776663 23689
Q ss_pred EEEEE
Q 013928 319 TLVEC 323 (434)
Q Consensus 319 ~lIev 323 (434)
++|-.
T Consensus 539 v~ir~ 543 (690)
T 3m49_A 539 TALVL 543 (690)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99853
No 80
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=80.71 E-value=7.1 Score=42.10 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=59.8
Q ss_pred hhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCchh
Q 013928 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQI 279 (434)
Q Consensus 202 p~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d~ 279 (434)
++|.|+|+. +.-++++.++..-+. -..+++..++..++|+++++...+++.+ .+++ | +..++
T Consensus 416 ~~a~GlA~~-----------GG~~P~~~~~~~F~~---~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tH-q-~~edl 479 (673)
T 1r9j_A 416 AILNGLDAH-----------DGIIPFGGTFLNFIG---YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTH-Q-PVELV 479 (673)
T ss_dssp HHHHHHHHH-----------SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT-C-CSSHH
T ss_pred HHHHHHHhc-----------CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEECCccCcCCCCccc-C-CHHHH
Confidence 456676655 323556666544332 2356788899999999999877765554 2222 2 23333
Q ss_pred hhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 280 YKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 280 ~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
+-.. .+|.++| .-.|..++...++.|++ ..++|++|-.
T Consensus 480 a~lr---~iP~l~V~~Pad~~e~~~~l~~a~~---~~~~Pv~i~~ 518 (673)
T 1r9j_A 480 AALR---AMPNLQVIRPSDQTETSGAWAVALS---SIHTPTVLCL 518 (673)
T ss_dssp HHHH---HSTTCEEECCSSHHHHHHHHHHHHH---CTTCCEEEEC
T ss_pred HHHc---CCCCCEEEeCCCHHHHHHHHHHHHH---hCCCeEEEEE
Confidence 3222 2555543 34577788887777764 2378999854
No 81
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=79.49 E-value=4.9 Score=40.08 Aligned_cols=98 Identities=18% Similarity=0.083 Sum_probs=50.8
Q ss_pred chhhHHHHHHHHHHHhhhhhcCCCceEEEE-eCccccccchHHHHHHH-HHHc--------CCCeEEEEEcCCccCcccc
Q 013928 201 IPVATGAAFTSKYRREVLKEADCDHVTLAF-FGDGTCNNGQFFECLNM-AALW--------KLPIVFVVENNLWAIGMSH 270 (434)
Q Consensus 201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~-~GDGa~~~G~~~EaLn~-A~~~--------~LPvI~VV~NN~y~is~~~ 270 (434)
+.+|.|+|++ + -++++.+ ++|.. +. .++.+.. ++.. ++||++++.+.+ ..+...
T Consensus 111 v~~a~G~A~~-----------G-~rpv~~~tf~~Fl-~~--a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg-~~g~g~ 174 (369)
T 1ik6_A 111 LGFAMGMAMA-----------G-LKPVAEIQFVDFI-WL--GADELLNHIAKLRYRSGGNYKAPLVVRTPVGS-GTRGGL 174 (369)
T ss_dssp HHHHHHHHHT-----------T-CEEEEECCCC-----C--CHHHHHHHHHHHHC------CCCCEEEEEECC-------
T ss_pred HHHHHHHHHC-----------C-CeeEEEecchhHH-HH--HHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC-CCCCCc
Confidence 4567777765 3 3444544 88876 22 2555544 4544 999999988665 232221
Q ss_pred cccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 271 LRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 271 ~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
..+ ..+. .... .+|.+.| .-.|+.++...++.|++ .++|++|-.
T Consensus 175 ~hs--~~~~-a~l~--~iPnl~V~~Psd~~e~~~ll~~A~~----~~~Pv~i~~ 219 (369)
T 1ik6_A 175 YHS--NSPE-AIFV--HTPGLVVVMPSTPYNAKGLLKAAIR----GDDPVVFLE 219 (369)
T ss_dssp -------HH-HHHH--TCTTCEEECCCSHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred ccc--ccHH-HHHc--CCCCcEEEecCCHHHHHHHHHHHHh----CCCCEEEEE
Confidence 111 1122 2223 2344332 34588888888887764 578999853
No 82
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=78.19 E-value=3.7 Score=40.45 Aligned_cols=99 Identities=19% Similarity=0.090 Sum_probs=56.0
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEE-EeCccccccchHHHHHHHHH---------HcCCCeEEEEEcCCccC-cc
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLA-FFGDGTCNNGQFFECLNMAA---------LWKLPIVFVVENNLWAI-GM 268 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~-~~GDGa~~~G~~~EaLn~A~---------~~~LPvI~VV~NN~y~i-s~ 268 (434)
.+.+|.|+|++ + -++++. .++|.. +. .++.+...+ ..++||++++.+ ++.- ..
T Consensus 74 ~v~~a~G~A~~-----------G-~rp~~~~~f~~F~-~~--a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G 137 (341)
T 2ozl_B 74 FAGIAVGAAMA-----------G-LRPICEFMTFNFS-MQ--AIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVA 137 (341)
T ss_dssp HHHHHHHHHHT-----------T-CEEEEECSSGGGG-GG--GHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCC
T ss_pred HHHHHHHHHHC-----------C-CEEEEEeccHHHH-HH--HHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCC
Confidence 34567777765 2 344444 388876 22 256665433 389999999885 5221 22
Q ss_pred cccccccCchhhhccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEE
Q 013928 269 SHLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECE 324 (434)
Q Consensus 269 ~~~~~~~~~d~~~~a~a~Gi~~~~-VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~ 324 (434)
+++.+ ..+ .... .+|.+. +.-.|+.++...++.|++ .++|++|-..
T Consensus 138 ~tHs~--~~e--a~l~--~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i~~~ 184 (341)
T 2ozl_B 138 AQHSQ--CFA--AWYG--HCPGLKVVSPWNSEDAKGLIKSAIR----DNNPVVVLEN 184 (341)
T ss_dssp GGGCC--CCH--HHHH--TSTTCEEECCCSHHHHHHHHHHHHH----SSSCEEEEEC
T ss_pred cchhh--HHH--HHhc--cCCCCEEEEeCCHHHHHHHHHHHHh----cCCCEEEEEC
Confidence 22212 122 2222 244433 234588888888887764 3689988653
No 83
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=76.31 E-value=9.2 Score=41.58 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=59.7
Q ss_pred chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCch
Q 013928 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQ 278 (434)
Q Consensus 201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d 278 (434)
+.+|.|+|+. +.-++++.++. .|.+ .....+.+++..++||+|+....+++.+ .+++ .+..|
T Consensus 461 v~~AaGlA~~-----------~G~~Pv~~~f~--~F~~-~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~TH--q~~ed 524 (711)
T 3uk1_A 461 SAAINGLVLH-----------GGYKPFGGTFL--TFSD-YSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTH--QSVEH 524 (711)
T ss_dssp HHHHHHHHHH-----------SSCEEEEEEEG--GGHH-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSH
T ss_pred HHHHHHHHHc-----------CCCEEEEEEhH--HHHH-HHHHHHHHhhhcCCCEEEEEECCCcCcCCCCCcc--CChhH
Confidence 4567777763 22344555543 2332 1356777889999999999987765543 3332 12333
Q ss_pred hhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 279 IYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 279 ~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
++-. -.+|.++| .-.|..++...++.|++ .++|++|-.
T Consensus 525 ~a~l---r~iPnl~V~~Pad~~E~~~~l~~Ai~----~~~Pv~ir~ 563 (711)
T 3uk1_A 525 VASL---RLIPNLDVWRPADTVETAVAWTYAVA----HQHPSCLIF 563 (711)
T ss_dssp HHHH---HTSTTCEEECCSSHHHHHHHHHHHHH----SSSCEEEEC
T ss_pred HHHH---hcCCCCEEEecCCHHHHHHHHHHHHh----cCCCEEEEe
Confidence 3322 24555544 34577788887777764 679998843
No 84
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=74.57 E-value=12 Score=43.13 Aligned_cols=112 Identities=17% Similarity=0.104 Sum_probs=67.8
Q ss_pred chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhh
Q 013928 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIY 280 (434)
Q Consensus 201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~ 280 (434)
+.+++|++++ +.++++.+--.+++. ..|.|..++-..+|+|+++.+.. +-++....+..-.|+.
T Consensus 67 ~~aaiGAa~a-------------GaR~~t~Ts~~Gl~l--m~e~l~~~ag~~~P~Vi~va~R~-g~~~glsi~~~hsd~~ 130 (1231)
T 2c42_A 67 AGAVHGALAA-------------GALTTTFTASQGLLL--MIPNMYKISGELLPGVFHVTARA-IAAHALSIFGDHQDIY 130 (1231)
T ss_dssp HHHHHHHHHT-------------TCCEEEEECHHHHHH--HHHHHHHHHHTTCCCEEEEEECC-CCSSSBCCSCCSHHHH
T ss_pred HHHHHHHHHc-------------CChHhhhccHHHHHH--HHHHHHHHhCCCCCEEEEECCCC-ccCCCCcCCCchhhHH
Confidence 4568888877 334444443333332 36778655556899888887765 2222111111111221
Q ss_pred hccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCC
Q 013928 281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 332 (434)
Q Consensus 281 ~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs 332 (434)
.++..|+++ +.-.++.++++-+..|...+.+.+-|+++-...+|. +|.
T Consensus 131 -~ar~~G~~v--l~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~-sh~ 178 (1231)
T 2c42_A 131 -AARQTGFAM--LASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRT-SHE 178 (1231)
T ss_dssp -TTTTSSCEE--EECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTT-TTC
T ss_pred -HHhcCCcEE--EECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCccc-ccc
Confidence 244456644 445688899998888988888889999987777654 553
No 85
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=72.91 E-value=7.2 Score=38.11 Aligned_cols=101 Identities=11% Similarity=0.032 Sum_probs=57.6
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEEE-eCccccccchHHHHHH-HHHH--------cCCCeEEEEEcCCccCccc
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAF-FGDGTCNNGQFFECLN-MAAL--------WKLPIVFVVENNLWAIGMS 269 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~-~GDGa~~~G~~~EaLn-~A~~--------~~LPvI~VV~NN~y~is~~ 269 (434)
.+.+|.|+|++ + -++++++ ++++. +. .++.+. .++. +++|+++++.+.+ +...+
T Consensus 64 ~~~~a~G~A~~-----------G-~rp~~~~t~~~F~-~~--a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~~G~ 127 (338)
T 1qs0_B 64 IVGTAVGMGAY-----------G-LRPVVEIQFADYF-YP--ASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GIYGG 127 (338)
T ss_dssp HHHHHHHHHHH-----------T-CEEEEECSCGGGC-GG--GHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SSSCC
T ss_pred HHHHHHHHHhC-----------C-CEEEEEeccHhHH-HH--HHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CCCCc
Confidence 45667777776 3 2344434 88886 32 256554 3443 3599999987655 33333
Q ss_pred ccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEE
Q 013928 270 HLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECE 324 (434)
Q Consensus 270 ~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~ 324 (434)
.+.. ..|+.-...--|+.++. -.|+.++...++.|++ .++|++|-..
T Consensus 128 th~s--~~d~~~l~~iP~l~V~~--Psd~~e~~~~l~~A~~----~~~Pv~i~~p 174 (338)
T 1qs0_B 128 QTHS--QSPEAMFTQVCGLRTVM--PSNPYDAKGLLIASIE----CDDPVIFLEP 174 (338)
T ss_dssp SSSS--CCCHHHHTTSTTCEEEC--CCSHHHHHHHHHHHHH----SSSCEEEEEE
T ss_pred cccc--ccHHHHHhcCCCCEEEe--eCCHHHHHHHHHHHHh----cCCcEEEEEc
Confidence 2221 22332222222555544 3578888888887774 3789998543
No 86
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=71.67 E-value=16 Score=39.66 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccC--
Q 013928 242 FECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGE-- 316 (434)
Q Consensus 242 ~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~-- 316 (434)
...+.+++..++||+|+....+++.+ .+++ .+..|++-+. .+|.++| --.|..++..+++.|++ ..+
T Consensus 472 ~~~ir~~al~~lpvv~v~thdg~gvG~dG~TH--q~ied~a~lr---~iPnl~V~~Pad~~e~~~~l~~Ai~---~~~~~ 543 (700)
T 3rim_A 472 RPAVRLAALMDIDTIYVWTHDSIGLGEDGPTH--QPIEHLSALR---AIPRLSVVRPADANETAYAWRTILA---RRNGS 543 (700)
T ss_dssp HHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--SCSSHHHHHH---TSTTCEEECCSSHHHHHHHHHHHHT---TTTCS
T ss_pred HHHHHHhcCCCCCEEEEEeCCCcccCCCCCcc--CChhHHHHHh---cCCCCEEEeCCCHHHHHHHHHHHHH---ccCCC
Confidence 44577899999999999987765544 3332 2233443332 3555544 33477788777776663 234
Q ss_pred CCEEEEE
Q 013928 317 GPTLVEC 323 (434)
Q Consensus 317 gP~lIev 323 (434)
+|++|-.
T Consensus 544 ~Pv~ir~ 550 (700)
T 3rim_A 544 GPVGLIL 550 (700)
T ss_dssp SCEEEEC
T ss_pred CCEEEEe
Confidence 6999854
No 87
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=68.69 E-value=5.7 Score=39.08 Aligned_cols=99 Identities=14% Similarity=0.063 Sum_probs=55.5
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEE-EeCccccccchHHHHHH-HHHHc--------CC-CeEEEEEcCCccCcc
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLA-FFGDGTCNNGQFFECLN-MAALW--------KL-PIVFVVENNLWAIGM 268 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~-~~GDGa~~~G~~~EaLn-~A~~~--------~L-PvI~VV~NN~y~is~ 268 (434)
.+.+|.|+|++ + -+++++ .++++.. ..++.+. .++.+ ++ ||++++...+ ....
T Consensus 79 ~v~~a~G~A~~-----------G-~rp~~~~tf~~F~~---~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g-~~~G 142 (342)
T 2bfd_B 79 IVGFGIGIAVT-----------G-ATAIAEIQFADYIF---PAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC-VGHG 142 (342)
T ss_dssp HHHHHHHHHHT-----------T-CCEEEECSSGGGCG---GGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESC-CSSC
T ss_pred HHHHHHHHHHC-----------C-CeeEEEecchhHHH---HHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCC-CCCC
Confidence 35567777776 3 334443 3888854 2255554 44443 44 9999877544 2233
Q ss_pred cccccccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 269 SHLRATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 269 ~~~~~~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
+++.. ..|+.- .+ .+|.+ .+.-.|+.+....++.|++ .++|++|-.
T Consensus 143 ~th~~--~~d~~~-l~--~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i~~ 189 (342)
T 2bfd_B 143 ALYHS--QSPEAF-FA--HCPGIKVVIPRSPFQAKGLLLSCIE----DKNPCIFFE 189 (342)
T ss_dssp GGGSS--CCCHHH-HH--TSTTCEEECCSSHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred cchhh--HhHHHH-Hh--cCCCcEEEeeCCHHHHHHHHHHHHh----cCCcEEEEe
Confidence 33222 233322 22 24433 3344588899888888764 378999854
No 88
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=63.50 E-value=19 Score=34.85 Aligned_cols=99 Identities=14% Similarity=0.061 Sum_probs=55.2
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEEE-eCccccccchHHHHHHH-HHH--------cCCCeEEEEEcCCccCccc
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAF-FGDGTCNNGQFFECLNM-AAL--------WKLPIVFVVENNLWAIGMS 269 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~-~GDGa~~~G~~~EaLn~-A~~--------~~LPvI~VV~NN~y~is~~ 269 (434)
.+.+|.|+|++ + -++++++ ++++. +. .++.+.. ++. .++|+|+++.. ++.....
T Consensus 62 ~v~~a~G~A~~-----------G-~rp~~~~t~~~F~-~~--a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g 125 (324)
T 1w85_B 62 IGGLAIGLALQ-----------G-FRPVPEIQFFGFV-YE--VMDSICGQMARIRYRTGGRYHMPITIRSPF-GGGVHTP 125 (324)
T ss_dssp HHHHHHHHHHT-----------T-CEEEEBCSSGGGG-GG--THHHHHTTGGGHHHHTTTSSCCCCEEEEEE-CSSSCCC
T ss_pred HHHHHHHHHhC-----------C-CEEEEEecchhHH-HH--HHHHHHHHHHHHhhhccCCCcCCEEEEEec-cCCCCCC
Confidence 35567777765 2 2344434 88876 22 2555543 343 79999988763 3222222
Q ss_pred ccccccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 270 HLRATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 270 ~~~~~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
...+. .+. .... .+|.+ .+.-.|+.+....++.|++ .++|++|-.
T Consensus 126 ~~hs~--~~~-a~~~--~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i~~ 171 (324)
T 1w85_B 126 ELHSD--SLE-GLVA--QQPGLKVVIPSTPYDAKGLLISAIR----DNDPVIFLE 171 (324)
T ss_dssp TTSSC--CCH-HHHT--TSTTCEEECCSSHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred Ccccc--cHH-HHHc--cCCCCEEEeeCCHHHHHHHHHHHHH----cCCCEEEEe
Confidence 22221 222 2222 34443 3344688898888887774 578999853
No 89
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=62.81 E-value=33 Score=33.08 Aligned_cols=99 Identities=18% Similarity=0.099 Sum_probs=55.5
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEEE-eCccccccchHHHHHHH-HHH--------cCCCeEEEEEcCCccCccc
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAF-FGDGTCNNGQFFECLNM-AAL--------WKLPIVFVVENNLWAIGMS 269 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~-~GDGa~~~G~~~EaLn~-A~~--------~~LPvI~VV~NN~y~is~~ 269 (434)
.+.+|.|+|++ + -++++++ +++.. +. .++.+.. ++. .++|+|+++.. ++.....
T Consensus 63 ~v~~a~G~A~~-----------G-~~p~~~~t~~~F~-~~--a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g 126 (324)
T 1umd_B 63 IVGAALGMAAH-----------G-LRPVAEIQFADYI-FP--GFDQLVSQVAKLRYRSGGQFTAPLVVRMPS-GGGVRGG 126 (324)
T ss_dssp HHHHHHHHHHH-----------T-CEEEEECSSGGGC-GG--GHHHHHHTTTTHHHHTTTSSCCCCEEEEEE-CSSSSCG
T ss_pred HHHHHHHHHHC-----------C-CEEEEEeccHhHH-HH--HHHHHHHHHHHHHhhcCCCCcCCEEEEEcC-CCCCCCC
Confidence 35567777776 3 2344444 88875 32 3555543 343 78999988873 3322222
Q ss_pred ccccccCchhhhccccC-CCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 270 HLRATSDPQIYKKGPAF-GMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 270 ~~~~~~~~d~~~~a~a~-Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
.+.+. .+. ...... |+.+ +.-.|+.+....++.|++ .++|++|-.
T Consensus 127 ~~hs~--~~~-a~~~~iP~~~V--~~P~d~~e~~~~l~~a~~----~~~Pv~i~~ 172 (324)
T 1umd_B 127 HHHSQ--SPE-AHFVHTAGLKV--VAVSTPYDAKGLLKAAIR----DEDPVVFLE 172 (324)
T ss_dssp GGSSC--CCH-HHHHTSTTCEE--EECCSHHHHHHHHHHHHH----CSSCEEEEE
T ss_pred Cccch--hHH-HHHhcCCCCEE--EEeCCHHHHHHHHHHHHh----cCCCEEEEe
Confidence 22221 222 222222 3333 344588898888888773 578998853
No 90
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=54.77 E-value=31 Score=38.65 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=54.6
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEE--EeCccccccc--hHHHHH-HHH-HHc--CCCeEEEEEcCCccCccccc
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLA--FFGDGTCNNG--QFFECL-NMA-ALW--KLPIVFVVENNLWAIGMSHL 271 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~--~~GDGa~~~G--~~~EaL-n~A-~~~--~LPvI~VV~NN~y~is~~~~ 271 (434)
.++.|.|+|++ ++...+|+ .+|| |.+| ..+.-+ +.+ +.| ++||++++.. +|.-..+.+
T Consensus 664 ~vg~a~G~A~~-----------G~~~lpv~e~qf~d--F~~~AQra~DQii~~~~ak~~~~~~vv~~l~~-G~~g~G~~H 729 (933)
T 2jgd_A 664 VLAFEYGYATA-----------EPRTLTIWEAQFGD--FANGAQVVIDQFISSGEQKWGRMCGLVMLLPH-GYEGQGPEH 729 (933)
T ss_dssp HHHHHHHHHHH-----------CTTSEEEEEC-CGG--GGGGGHHHHHHTTTTHHHHHCCCCCCEEEEEC-CCSSSCTTS
T ss_pred HHHHHHHHHhc-----------CCCCCCEEEEEEhh--hhcccHHHHHHHHHHHHHHHccCCCEEEEEeC-CCCCCCccc
Confidence 34566777766 55533443 5665 4443 223333 333 344 8899998886 443223332
Q ss_pred ccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEE
Q 013928 272 RATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVE 322 (434)
Q Consensus 272 ~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIe 322 (434)
.+....++ +....+|.++| .-.|+.+....++.++. +..++|++|-
T Consensus 730 ss~~~E~~---l~~~~~pnm~V~~Pst~~e~~~lLr~a~~--~~~~~Pvii~ 776 (933)
T 2jgd_A 730 SSARLERY---LQLCAEQNMQVCVPSTPAQVYHMLRRQAL--RGMRRPLVVM 776 (933)
T ss_dssp SCCCHHHH---HHTCCTTCCEEECCCSHHHHHHHHHHHHH--SSCCCCEEEE
T ss_pred ccchHHHH---HHHhCCCCeEEEecCCHHHHHHHHHHHHH--hcCCCcEEEE
Confidence 22222333 33344455443 34577888877766531 2347999983
No 91
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=48.74 E-value=45 Score=37.08 Aligned_cols=106 Identities=10% Similarity=0.051 Sum_probs=55.5
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccch---HHHHHHHHH-Hc--CCCeEEEEEcCCccCccccccc
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQ---FFECLNMAA-LW--KLPIVFVVENNLWAIGMSHLRA 273 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~---~~EaLn~A~-~~--~LPvI~VV~NN~y~is~~~~~~ 273 (434)
.++.|+|+|++ +++.+++.-+-=|.|..+. +-+=++.+. .| ++||++++-...++. .+.+.+
T Consensus 596 ~vG~a~G~A~~-----------G~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~~G~-Gp~Hs~ 663 (868)
T 2yic_A 596 AVGFEYGYSVG-----------NPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEGQ-GPDHTS 663 (868)
T ss_dssp HHHHHHHHHHH-----------CTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSSS-CTTSSC
T ss_pred HHHHHHHHHcc-----------CCCCceEEEEehHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCC-ChhhcC
Confidence 34567777776 6555554444444455443 222222221 23 889999888654332 233222
Q ss_pred ccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEE
Q 013928 274 TSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVE 322 (434)
Q Consensus 274 ~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIe 322 (434)
....++... ..+|+++| .-.|+.+....++.++. +..++|++|-
T Consensus 664 ~~~E~~l~l---~~~pnm~V~~Ps~p~~~~~lLr~a~~--~~~~~Pvii~ 708 (868)
T 2yic_A 664 GRIERFLQL---WAEGSMTIAMPSTPANYFHLLRRHGK--DGIQRPLIVF 708 (868)
T ss_dssp CCHHHHHHH---CCTTSCEEECCCSHHHHHHHHHHHHH--SSCCCCEEEE
T ss_pred CcHHHHHhc---CCCCCCEEEEeCCHHHHHHHHHHHHh--cCCCCcEEEE
Confidence 212334333 34444443 33577888887776653 2245898773
No 92
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=43.20 E-value=57 Score=37.30 Aligned_cols=107 Identities=9% Similarity=-0.019 Sum_probs=56.7
Q ss_pred cchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccch---HHHHHHHH---HHcCCCeEEEEEcCCccCccccccc
Q 013928 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQ---FFECLNMA---ALWKLPIVFVVENNLWAIGMSHLRA 273 (434)
Q Consensus 200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~---~~EaLn~A---~~~~LPvI~VV~NN~y~is~~~~~~ 273 (434)
.++.|+|+|++ +++.+++.-+-=|.|.++. +-+=++-+ ...++||++.+.....+. .+.+.+
T Consensus 841 ~vg~a~G~A~~-----------G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~~G~-G~~Hs~ 908 (1113)
T 2xt6_A 841 AVGFEYGYSVG-----------NPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEGQ-GPDHTS 908 (1113)
T ss_dssp HHHHHHHHHHH-----------CTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSSS-CTTSSC
T ss_pred HHHHHHHHHhc-----------CCCCceEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCCCC-Chhhhc
Confidence 44567777776 6655554444444465543 22222332 123889999988654332 233222
Q ss_pred ccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928 274 TSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (434)
Q Consensus 274 ~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev 323 (434)
....++.. -..+|.++| .-.|+.+....++.++. +..++|++|--
T Consensus 909 ~~~E~~l~---l~~~pnm~V~~Ps~~~~~~~lLr~a~~--~~~~~Pvii~~ 954 (1113)
T 2xt6_A 909 GRIERFLQ---LWAEGSMTIAMPSTPANYFHLLRRHGK--DGIQRPLIVFT 954 (1113)
T ss_dssp CCHHHHHH---HCCTTSCEEECCSSHHHHHHHHHHHHH--SSCCCCEEEEE
T ss_pred ccHHHHHh---cCCCCCcEEEecCCHHHHHHHHHHHHh--ccCCCCEEEEe
Confidence 21233333 234455543 33577888887776653 23458988743
No 93
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=42.54 E-value=53 Score=30.11 Aligned_cols=56 Identities=20% Similarity=0.133 Sum_probs=37.2
Q ss_pred CCceEEEEeCccccccchHHHHHHHHHHcCCC--eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeC
Q 013928 223 CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 295 (434)
Q Consensus 223 ~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP--vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG 295 (434)
+.+++|.+.|.|+. .++|--+...+++ |+.||.|+.=+ .-.++|+.+|+|++.++-
T Consensus 5 ~~riavl~SG~Gsn-----l~all~~~~~~~~~eI~~Vis~~~~a------------~~~~~A~~~gIp~~~~~~ 62 (215)
T 3tqr_A 5 PLPIVVLISGNGTN-----LQAIIGAIQKGLAIEIRAVISNRADA------------YGLKRAQQADIPTHIIPH 62 (215)
T ss_dssp CEEEEEEESSCCHH-----HHHHHHHHHTTCSEEEEEEEESCTTC------------HHHHHHHHTTCCEEECCG
T ss_pred CcEEEEEEeCCcHH-----HHHHHHHHHcCCCCEEEEEEeCCcch------------HHHHHHHHcCCCEEEeCc
Confidence 34567777888876 4466666555455 77788775301 114678889999998863
No 94
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=42.29 E-value=34 Score=30.05 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 013928 354 ITALKKYLIESSLASEAELKAIEKKIDEVVED 385 (434)
Q Consensus 354 l~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~ 385 (434)
|..+.+.|++.|++|++|+++-.++++++.+.
T Consensus 113 L~ALe~lLvekGvit~~EL~ar~aEv~ar~~~ 144 (157)
T 2zzd_B 113 LLTAARILVDKQFVTLTELHNKIVEMRERVAS 144 (157)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhc
Confidence 56789999999999999999998888887644
No 95
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=39.86 E-value=90 Score=27.18 Aligned_cols=72 Identities=11% Similarity=-0.055 Sum_probs=44.0
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc----------cc-----cccCchhhhccccCCC
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH----------LR-----ATSDPQIYKKGPAFGM 288 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~----------~~-----~~~~~d~~~~a~a~Gi 288 (434)
...+|+++.||..+.+...+.+..+...+.+|..|-.-+.-+...+. .. ......+..++..-|.
T Consensus 111 ~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG 190 (218)
T 3ibs_A 111 VGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKG 190 (218)
T ss_dssp CCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEE
T ss_pred CCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCC
Confidence 45789999999988776778888888888776655443310000000 00 0011236667777788
Q ss_pred cEEEEeC
Q 013928 289 PGFHVDG 295 (434)
Q Consensus 289 ~~~~VdG 295 (434)
.++.++.
T Consensus 191 ~~~~~~~ 197 (218)
T 3ibs_A 191 IYVRVDN 197 (218)
T ss_dssp EEEEECS
T ss_pred EEEECCC
Confidence 8888875
No 96
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=39.70 E-value=38 Score=28.39 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=31.1
Q ss_pred cccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCE
Q 013928 283 GPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT 319 (434)
Q Consensus 283 a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~ 319 (434)
+.+-|.-.++..|+|.+++..++++-++.+|.+-|.+
T Consensus 79 gsgsgvm~i~f~gddlea~ekalkemirqarkfagtv 115 (170)
T 4hhu_A 79 GSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTV 115 (170)
T ss_dssp CTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred eCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceE
Confidence 3445677788899999999999999999999987743
No 97
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=37.32 E-value=57 Score=29.87 Aligned_cols=57 Identities=25% Similarity=0.217 Sum_probs=36.8
Q ss_pred CCceEEEEeCccccccchHHHHHHHHHHc-CCC--eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCC
Q 013928 223 CDHVTLAFFGDGTCNNGQFFECLNMAALW-KLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 296 (434)
Q Consensus 223 ~d~~vv~~~GDGa~~~G~~~EaLn~A~~~-~LP--vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~ 296 (434)
+.+++|.+.|.|+..+ ++--+... .+| |+.||.|+.-+ .-.++|+.+|+|++.++-.
T Consensus 8 ~~ri~vl~SG~gsnl~-----all~~~~~~~~~~~I~~Vis~~~~a------------~~l~~A~~~gIp~~~~~~~ 67 (215)
T 3kcq_A 8 ELRVGVLISGRGSNLE-----ALAKAFSTEESSVVISCVISNNAEA------------RGLLIAQSYGIPTFVVKRK 67 (215)
T ss_dssp CEEEEEEESSCCHHHH-----HHHHHTCCC-CSEEEEEEEESCTTC------------THHHHHHHTTCCEEECCBT
T ss_pred CCEEEEEEECCcHHHH-----HHHHHHHcCCCCcEEEEEEeCCcch------------HHHHHHHHcCCCEEEeCcc
Confidence 4467888999987744 45444433 344 78888776311 1136788899999988643
No 98
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=36.74 E-value=1e+02 Score=28.07 Aligned_cols=55 Identities=27% Similarity=0.225 Sum_probs=36.7
Q ss_pred CceEEEEeCccccccchHHHHHHHHHHc-CCC--eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeC
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAALW-KLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 295 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~-~LP--vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG 295 (434)
.+++|.+.|.|+.. +++--+... ++| |+.||.|+.=+ .-.++|+.+|+|++.++-
T Consensus 8 ~ri~vl~SG~gsnl-----~all~~~~~~~l~~~I~~Visn~~~a------------~~l~~A~~~gIp~~~~~~ 65 (209)
T 4ds3_A 8 NRVVIFISGGGSNM-----EALIRAAQAPGFPAEIVAVFSDKAEA------------GGLAKAEAAGIATQVFKR 65 (209)
T ss_dssp EEEEEEESSCCHHH-----HHHHHHHTSTTCSEEEEEEEESCTTC------------THHHHHHHTTCCEEECCG
T ss_pred ccEEEEEECCcHHH-----HHHHHHHHcCCCCcEEEEEEECCccc------------HHHHHHHHcCCCEEEeCc
Confidence 46788899998764 355555443 355 78888776311 113678899999998864
No 99
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=36.48 E-value=91 Score=30.06 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=36.7
Q ss_pred CCceEEEEeCccccccchHHHHHHHHHHc-CCC--eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEe
Q 013928 223 CDHVTLAFFGDGTCNNGQFFECLNMAALW-KLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD 294 (434)
Q Consensus 223 ~d~~vv~~~GDGa~~~G~~~EaLn~A~~~-~LP--vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~Vd 294 (434)
+.+++|...|.|+. .++|--+... .+| |+.||-|+. +...+|+.+|+|++.++
T Consensus 105 ~~ri~vl~Sg~g~n-----l~~ll~~~~~g~l~~~I~~Visn~~--------------~~~~~A~~~gIp~~~~~ 160 (302)
T 3o1l_A 105 KKRVVLMASRESHC-----LADLLHRWHSDELDCDIACVISNHQ--------------DLRSMVEWHDIPYYHVP 160 (302)
T ss_dssp CCEEEEEECSCCHH-----HHHHHHHHHTTCSCSEEEEEEESSS--------------TTHHHHHTTTCCEEECC
T ss_pred CcEEEEEEeCCchh-----HHHHHHHHHCCCCCcEEEEEEECcH--------------HHHHHHHHcCCCEEEcC
Confidence 45677888888754 5566666544 355 787887774 23356888999999884
No 100
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=35.25 E-value=76 Score=28.97 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=36.6
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcC-CC--eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeC
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 295 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~-LP--vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG 295 (434)
+++|.+.|-|+. .++|--+...+ +| |+.||.|+. .....++|+.+|+|++.++-
T Consensus 4 riavl~Sg~Gsn-----l~ali~~~~~~~l~~eI~~Visn~~------------~a~v~~~A~~~gIp~~~~~~ 60 (211)
T 3p9x_A 4 RVAIFASGSGTN-----AEAIIQSQKAGQLPCEVALLITDKP------------GAKVVERVKVHEIPVCALDP 60 (211)
T ss_dssp EEEEECCTTCHH-----HHHHHHHHHTTCCSSEEEEEEESCS------------SSHHHHHHHTTTCCEEECCG
T ss_pred EEEEEEeCCchH-----HHHHHHHHHcCCCCcEEEEEEECCC------------CcHHHHHHHHcCCCEEEeCh
Confidence 467777777654 55676665443 55 788887764 12456788899999988763
No 101
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=34.55 E-value=73 Score=30.44 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=36.6
Q ss_pred CCceEEEEeCccccccchHHHHHHHHHHc-CCC--eEEEEEcC-CccCcccccccccCchhhhccccCCCcEEEEeC
Q 013928 223 CDHVTLAFFGDGTCNNGQFFECLNMAALW-KLP--IVFVVENN-LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 295 (434)
Q Consensus 223 ~d~~vv~~~GDGa~~~G~~~EaLn~A~~~-~LP--vI~VV~NN-~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG 295 (434)
+.+++|.+.|-|+. .++|--+... .+| |+.||-|+ . +...+|+.+|+|++.++-
T Consensus 89 ~~ri~vl~Sg~g~n-----l~~ll~~~~~g~l~~~i~~Visn~p~--------------~~~~~A~~~gIp~~~~~~ 146 (288)
T 3obi_A 89 RRKVMLLVSQSDHC-----LADILYRWRVGDLHMIPTAIVSNHPR--------------ETFSGFDFGDIPFYHFPV 146 (288)
T ss_dssp CEEEEEEECSCCHH-----HHHHHHHHHTTSSCEEEEEEEESSCG--------------GGSCCTTTTTCCEEECCC
T ss_pred CcEEEEEEcCCCCC-----HHHHHHHHHCCCCCeEEEEEEcCCCh--------------hHHHHHHHcCCCEEEeCC
Confidence 34567777887764 5566666544 466 77788777 3 233568889999998753
No 102
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=34.19 E-value=49 Score=27.72 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=28.8
Q ss_pred CCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCE
Q 013928 287 GMPGFHVDGMDVLKVREVAKEAIERARRGEGPT 319 (434)
Q Consensus 287 Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~ 319 (434)
|.-.++..|+|.+++..++++-++.+|.+-|.+
T Consensus 2 gvm~i~f~gddlea~ekalkemirqarkfagtv 34 (170)
T 4hhu_A 2 GVMVIVFEGDDLEALEKALKEMIRQARKFAGTV 34 (170)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred ceEEEEEecCcHHHHHHHHHHHHHHHHhhcceE
Confidence 556788899999999999999999999987754
No 103
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=32.84 E-value=81 Score=30.11 Aligned_cols=55 Identities=13% Similarity=0.018 Sum_probs=37.0
Q ss_pred CCceEEEEeCccccccchHHHHHHHHHH-cCCC--eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeC
Q 013928 223 CDHVTLAFFGDGTCNNGQFFECLNMAAL-WKLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 295 (434)
Q Consensus 223 ~d~~vv~~~GDGa~~~G~~~EaLn~A~~-~~LP--vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG 295 (434)
+.+++|.+.|-|+. .++|--+.. -.+| |+.||-|+.= . ..++|+.+|+|++.++-
T Consensus 88 ~~ri~vl~Sg~g~n-----l~~ll~~~~~g~l~~~i~~Visn~~~------------a-~~~~A~~~gIp~~~~~~ 145 (287)
T 3nrb_A 88 RKKVVIMVSKFDHC-----LGDLLYRHRLGELDMEVVGIISNHPR------------E-ALSVSLVGDIPFHYLPV 145 (287)
T ss_dssp CCEEEEEECSCCHH-----HHHHHHHHHHTSSCCEEEEEEESSCG------------G-GCCCCCCTTSCEEECCC
T ss_pred CcEEEEEEeCCCcC-----HHHHHHHHHCCCCCeEEEEEEeCChH------------H-HHHHHHHcCCCEEEEec
Confidence 45677778888754 556665543 3455 7888877751 0 44568889999998753
No 104
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=32.82 E-value=52 Score=24.58 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=25.4
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHccCCCE
Q 013928 291 FHVDGMDVLKVREVAKEAIERARRGEGPT 319 (434)
Q Consensus 291 ~~VdG~D~~av~~a~~~Al~~ar~~~gP~ 319 (434)
++..|.|.+++..++++-++.+|.+-|.+
T Consensus 5 irfrgddleafekalkemirqarkfagtv 33 (85)
T 2kl8_A 5 IRFRGDDLEAFEKALKEMIRQARKFAGTV 33 (85)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTTTCEE
T ss_pred eeecCCcHHHHHHHHHHHHHHHHhhcceE
Confidence 57789999999999999999999887753
No 105
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=31.05 E-value=63 Score=29.33 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=35.0
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCC--CeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeC
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKL--PIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 295 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~L--PvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG 295 (434)
+++|.+.|.|++.+. .|......++ .|+.||.|+. .....++|+.+|+|++.++-
T Consensus 5 ki~vl~sG~g~~~~~----~l~~l~~~~l~~~I~~Vit~~~------------~~~v~~~A~~~gIp~~~~~~ 61 (212)
T 3av3_A 5 RLAVFASGSGTNFQA----IVDAAKRGDLPARVALLVCDRP------------GAKVIERAARENVPAFVFSP 61 (212)
T ss_dssp EEEEECCSSCHHHHH----HHHHHHTTCCCEEEEEEEESST------------TCHHHHHHHHTTCCEEECCG
T ss_pred EEEEEEECCcHHHHH----HHHHHHhCCCCCeEEEEEeCCC------------CcHHHHHHHHcCCCEEEeCc
Confidence 578888999886443 2222223333 4777777653 12456778899999998764
No 106
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=29.83 E-value=87 Score=26.80 Aligned_cols=81 Identities=11% Similarity=0.073 Sum_probs=43.5
Q ss_pred CceEEEEeCccccccch--HHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCc-EEEEeCCCHHH
Q 013928 224 DHVTLAFFGDGTCNNGQ--FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMP-GFHVDGMDVLK 300 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~--~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~-~~~VdG~D~~a 300 (434)
...+++++.||..+.+. ..+.+..+...+++|..|-.-+. .........+..++..-|-. ++.++. ..+
T Consensus 110 ~~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~~------~~~~~~~~~L~~iA~~~~g~~~~~~~~--~~~ 181 (198)
T 1n3y_A 110 AAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLA------FQNRNSWKELNDIASKPSQEHIFKVED--FDA 181 (198)
T ss_dssp SEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGG------GGSSTTHHHHHHHSCSSSGGGEEEESS--GGG
T ss_pred CceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEcccc------ccccccHHHHHHHHcCCCcccEEEeCC--HHH
Confidence 35688999999876432 35667777778877655533222 10000112355566554443 466653 335
Q ss_pred HHHHHHHHHHHH
Q 013928 301 VREVAKEAIERA 312 (434)
Q Consensus 301 v~~a~~~Al~~a 312 (434)
+...+.+..+..
T Consensus 182 l~~~~~~i~~~i 193 (198)
T 1n3y_A 182 LKDIQNQLKEKI 193 (198)
T ss_dssp GGGGHHHHHHHH
T ss_pred HHHHHHHHHhhe
Confidence 545444444433
No 107
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=28.22 E-value=78 Score=30.21 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=36.3
Q ss_pred CCceEEEEeCccccccchHHHHHHHHHHc-CCC--eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEe
Q 013928 223 CDHVTLAFFGDGTCNNGQFFECLNMAALW-KLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD 294 (434)
Q Consensus 223 ~d~~vv~~~GDGa~~~G~~~EaLn~A~~~-~LP--vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~Vd 294 (434)
+.+++|...|.|+. .++|--+... .+| |+.||-|+. +...+|+.+|+|++.++
T Consensus 90 ~~ri~vl~Sg~g~~-----l~~ll~~~~~g~l~~~i~~Visn~~--------------~~~~~A~~~gIp~~~~~ 145 (286)
T 3n0v_A 90 RPKVVIMVSKADHC-----LNDLLYRQRIGQLGMDVVAVVSNHP--------------DLEPLAHWHKIPYYHFA 145 (286)
T ss_dssp CCEEEEEESSCCHH-----HHHHHHHHHTTSSCCEEEEEEESSS--------------TTHHHHHHTTCCEEECC
T ss_pred CcEEEEEEeCCCCC-----HHHHHHHHHCCCCCcEEEEEEeCcH--------------HHHHHHHHcCCCEEEeC
Confidence 45677888888754 5567666544 355 788887775 12345788999999875
No 108
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=27.55 E-value=1.6e+02 Score=26.65 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=46.3
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcC---CCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCC---CH
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWK---LPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM---DV 298 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~---LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~---D~ 298 (434)
+++|.+.|.|+. .++|--+...+ ..|+.||.|+. .+...++|+.+|+|++.++-. +-
T Consensus 2 riaVl~SG~Gs~-----L~aLi~~~~~~~~~~~I~~Vvs~~~------------~~~~~~~A~~~gIp~~~~~~~~~~~r 64 (209)
T 1meo_A 2 RVAVLISGTGSN-----LQALIDSTREPNSSAQIDIVISNKA------------AVAGLDKAERAGIPTRVINHKLYKNR 64 (209)
T ss_dssp EEEEEESSSCTT-----HHHHHHHHHSTTCSCEEEEEEESST------------TCHHHHHHHHTTCCEEECCGGGSSSH
T ss_pred eEEEEEECCchH-----HHHHHHHHhcCCCCcEEEEEEeCCC------------ChHHHHHHHHcCCCEEEECccccCch
Confidence 477888899875 44555544333 34788887764 111246788899999987642 22
Q ss_pred HHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928 299 LKVREVAKEAIERARRGEGPTLVECETY 326 (434)
Q Consensus 299 ~av~~a~~~Al~~ar~~~gP~lIev~t~ 326 (434)
.+..+.+.+.+ +. ..|-+|-+..|
T Consensus 65 ~~~~~~~~~~l---~~-~~~Dliv~a~y 88 (209)
T 1meo_A 65 VEFDSAIDLVL---EE-FSIDIVCLAGF 88 (209)
T ss_dssp HHHHHHHHHHH---HH-TTCCEEEEESC
T ss_pred hhhhHHHHHHH---Hh-cCCCEEEEcch
Confidence 22222222232 23 35666666554
No 109
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=27.12 E-value=77 Score=30.36 Aligned_cols=53 Identities=21% Similarity=0.167 Sum_probs=35.9
Q ss_pred CCceEEEEeCccccccchHHHHHHHHHHc-CCC--eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEe
Q 013928 223 CDHVTLAFFGDGTCNNGQFFECLNMAALW-KLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD 294 (434)
Q Consensus 223 ~d~~vv~~~GDGa~~~G~~~EaLn~A~~~-~LP--vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~Vd 294 (434)
+.+++|.+.|.|+. .++|--+... .+| |..||-|+. +...+|+.+|+|++.++
T Consensus 95 ~~ri~vl~Sg~g~~-----l~~ll~~~~~g~l~~~i~~Visn~~--------------~~~~~A~~~gIp~~~~~ 150 (292)
T 3lou_A 95 RPKVLIMVSKLEHC-----LADLLFRWKMGELKMDIVGIVSNHP--------------DFAPLAAQHGLPFRHFP 150 (292)
T ss_dssp CCEEEEEECSCCHH-----HHHHHHHHHHTSSCCEEEEEEESSS--------------TTHHHHHHTTCCEEECC
T ss_pred CCEEEEEEcCCCcC-----HHHHHHHHHcCCCCcEEEEEEeCcH--------------HHHHHHHHcCCCEEEeC
Confidence 45677888888754 5566665443 355 788887775 12345888999999875
No 110
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=27.06 E-value=67 Score=28.48 Aligned_cols=32 Identities=3% Similarity=-0.128 Sum_probs=20.7
Q ss_pred EEEEeCccccccchHHHHHHHHHHcCCCeEEE
Q 013928 227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFV 258 (434)
Q Consensus 227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~V 258 (434)
++.+.||+....+...+....+...+..|.+|
T Consensus 110 iil~~~~~~~~~~~~~~~a~~lk~~gi~v~~I 141 (192)
T 2x5n_A 110 VAFVGSPIVEDEKNLIRLAKRMKKNNVAIDII 141 (192)
T ss_dssp EEEECSCCSSCHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEEECCCCCCchhHHHHHHHHHHCCCEEEEE
Confidence 45555666434555667777778888876655
No 111
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=26.14 E-value=1.1e+02 Score=25.33 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=38.6
Q ss_pred hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHc--cCCCEEEEEEE
Q 013928 279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR--GEGPTLVECET 325 (434)
Q Consensus 279 ~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~--~~gP~lIev~t 325 (434)
+.-++..|++.++.+...|+.++.+.+.+-++++-. .+.|++|++..
T Consensus 8 ielKG~~~~l~vl~l~~~d~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~ 56 (120)
T 3ghf_A 8 IELKGSSFTLSVVHLHEAEPEVIRQALEDKIAQAPAFLKHAPVVINVSG 56 (120)
T ss_dssp CCCCCCCCCCEEEEEESCCHHHHHHHHHHHHHHSHHHHTTCEEEEEEEE
T ss_pred EEEEcCeeeEEEEEeCCCCHHHHHHHHHHHHHhChHhhCCCcEEEEccc
Confidence 444667789999999999999999999988887754 36799999954
No 112
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=24.10 E-value=1.1e+02 Score=27.99 Aligned_cols=52 Identities=21% Similarity=0.239 Sum_probs=33.4
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCCC--eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEe
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD 294 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP--vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~Vd 294 (434)
+++|.+.|-|+. .++|--+..-+++ |+.|+.|+. + ...++|+.+|+|++.++
T Consensus 14 ri~vl~SG~gsn-----l~all~~~~~~~~~eI~~Vis~~~-a------------~~~~~A~~~gIp~~~~~ 67 (215)
T 3da8_A 14 RLVVLASGTGSL-----LRSLLDAAVGDYPARVVAVGVDRE-C------------RAAEIAAEASVPVFTVR 67 (215)
T ss_dssp EEEEEESSCCHH-----HHHHHHHSSTTCSEEEEEEEESSC-C------------HHHHHHHHTTCCEEECC
T ss_pred EEEEEEeCChHH-----HHHHHHHHhccCCCeEEEEEeCCc-h------------HHHHHHHHcCCCEEEeC
Confidence 456666788765 4455444332454 777777664 1 13567888999999885
No 113
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=24.02 E-value=1e+02 Score=27.91 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-----HHHHHHhhh
Q 013928 354 ITALKKYLIESSLASEAELKAIEKKIDEVV-----EDAVEFADE 392 (434)
Q Consensus 354 l~~~~~~L~~~G~~te~e~~~i~~e~~~~v-----~~a~~~A~~ 392 (434)
...++..|+++|+++.++++++.+.+...+ .+.+..|+.
T Consensus 20 ~~AL~~lL~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~ 63 (203)
T 1ugp_A 20 VKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWT 63 (203)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhC
Confidence 457899999999999999999988888772 233566666
No 114
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=21.47 E-value=71 Score=28.83 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=30.8
Q ss_pred CceEEEEeCccccccchHHHHHHHHH-HcCCCeEEEEEc
Q 013928 224 DHVTLAFFGDGTCNNGQFFECLNMAA-LWKLPIVFVVEN 261 (434)
Q Consensus 224 d~~vv~~~GDGa~~~G~~~EaLn~A~-~~~LPvI~VV~N 261 (434)
-..+|+++|+=.-...-+..++..|. ..++|||.|..+
T Consensus 80 Sk~vIllIs~~T~~s~~v~wEIe~Ai~~~~~PII~Vy~~ 118 (189)
T 3hyn_A 80 SKNIILFLSSITANSRALREEMNYGIGTKGLPVIVIYPD 118 (189)
T ss_dssp EEEEEEECCTTCCCCHHHHHHHHHHTTTTCCCEEEEETT
T ss_pred cCcEEEEEecCccccchhHHHHHHHHHhcCCcEEEEECC
Confidence 45789999999876334555999999 999999988765
No 115
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=21.41 E-value=94 Score=28.18 Aligned_cols=55 Identities=11% Similarity=0.142 Sum_probs=33.7
Q ss_pred ceEEEEeCccccccchHHHHHHHHHHcCC--CeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeC
Q 013928 225 HVTLAFFGDGTCNNGQFFECLNMAALWKL--PIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 295 (434)
Q Consensus 225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~L--PvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG 295 (434)
+++|.+.|.|++.+- .|......++ .|+.||.|+. .....++|+.+|+|++.++-
T Consensus 3 rI~vl~SG~g~~~~~----~l~~l~~~~~~~~i~~Vvs~~~------------~~~~~~~A~~~gIp~~~~~~ 59 (216)
T 2ywr_A 3 KIGVLVSGRGSNLQA----IIDAIESGKVNASIELVISDNP------------KAYAIERCKKHNVECKVIQR 59 (216)
T ss_dssp EEEEEECSCCHHHHH----HHHHHHTTSSCEEEEEEEESCT------------TCHHHHHHHHHTCCEEECCG
T ss_pred EEEEEEeCCcHHHHH----HHHHHHhCCCCCeEEEEEeCCC------------ChHHHHHHHHcCCCEEEeCc
Confidence 356666788876442 2222233345 4777777753 12345778889999998764
No 116
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=21.17 E-value=2.3e+02 Score=26.68 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=28.4
Q ss_pred EEEeCcccc--ccchHHHHHHHHHHcCCCeEEEEEcC
Q 013928 228 LAFFGDGTC--NNGQFFECLNMAALWKLPIVFVVENN 262 (434)
Q Consensus 228 v~~~GDGa~--~~G~~~EaLn~A~~~~LPvI~VV~NN 262 (434)
|+|--||+. .+|.+.-+|.+|..+. .|.|+|.+.
T Consensus 3 i~ir~Da~~~IG~GHvmRcl~LA~~l~-~v~F~~~~~ 38 (282)
T 3hbm_A 3 VLFRSDSSSQIGFGHIKRDLVLAKQYS-DVSFACLPL 38 (282)
T ss_dssp EEEEECCBTTTBSHHHHHHHHHHTTCS-SEEEEECCC
T ss_pred EEEEEecCCCccccHHHHHHHHHHHHH-hCEEEEecC
Confidence 567778885 5899999999999999 999998653
Done!