Query 013929
Match_columns 433
No_of_seqs 380 out of 2998
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:48:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 1.1E-43 2.5E-48 358.6 31.5 280 117-431 284-568 (571)
2 PHA02713 hypothetical protein; 100.0 4.7E-41 1E-45 341.1 29.4 250 142-421 273-545 (557)
3 KOG4441 Proteins containing BT 100.0 3.4E-38 7.4E-43 318.8 26.2 235 174-432 282-522 (571)
4 PLN02153 epithiospecifier prot 100.0 5.7E-37 1.2E-41 295.6 31.2 259 148-430 4-310 (341)
5 PLN02153 epithiospecifier prot 100.0 5.7E-37 1.2E-41 295.6 30.8 268 114-406 29-338 (341)
6 PLN02193 nitrile-specifier pro 100.0 1.1E-35 2.4E-40 297.0 34.9 278 116-428 119-435 (470)
7 TIGR03547 muta_rot_YjhT mutatr 100.0 7.4E-36 1.6E-40 288.8 30.2 260 115-403 15-342 (346)
8 PHA03098 kelch-like protein; P 100.0 5E-36 1.1E-40 306.4 30.1 259 142-429 265-531 (534)
9 PHA02713 hypothetical protein; 100.0 7.7E-36 1.7E-40 303.0 29.0 217 193-432 272-512 (557)
10 TIGR03548 mutarot_permut cycli 100.0 2.7E-35 5.8E-40 281.9 28.7 259 114-399 10-320 (323)
11 PLN02193 nitrile-specifier pro 100.0 5.9E-35 1.3E-39 291.8 32.3 266 114-405 172-466 (470)
12 TIGR03547 muta_rot_YjhT mutatr 100.0 6.8E-35 1.5E-39 282.0 30.4 252 156-432 1-321 (346)
13 PRK14131 N-acetylneuraminic ac 100.0 5.6E-34 1.2E-38 277.8 28.1 272 114-415 35-374 (376)
14 PHA02790 Kelch-like protein; P 100.0 9.4E-34 2E-38 283.9 29.4 210 173-416 268-477 (480)
15 PRK14131 N-acetylneuraminic ac 100.0 5.1E-33 1.1E-37 271.1 29.8 256 152-432 18-343 (376)
16 PHA03098 kelch-like protein; P 100.0 1.7E-33 3.7E-38 287.8 26.7 231 112-368 289-525 (534)
17 KOG4693 Uncharacterized conser 100.0 1.3E-33 2.9E-38 244.4 21.3 258 114-393 20-313 (392)
18 TIGR03548 mutarot_permut cycli 100.0 8.4E-33 1.8E-37 264.7 29.1 244 170-432 7-303 (323)
19 PHA02790 Kelch-like protein; P 100.0 3.6E-33 7.9E-38 279.6 26.6 203 116-361 270-477 (480)
20 KOG4693 Uncharacterized conser 100.0 2.1E-31 4.5E-36 230.8 20.4 244 169-432 16-302 (392)
21 KOG1230 Protein containing rep 100.0 1.3E-27 2.7E-32 218.9 14.8 220 119-361 80-347 (521)
22 KOG0379 Kelch repeat-containin 99.9 5.9E-26 1.3E-30 226.5 26.2 249 157-430 55-326 (482)
23 KOG0379 Kelch repeat-containin 99.9 8E-25 1.7E-29 218.4 25.8 225 116-365 69-312 (482)
24 KOG4152 Host cell transcriptio 99.9 2.3E-25 4.9E-30 208.8 18.5 263 112-409 37-363 (830)
25 KOG1230 Protein containing rep 99.9 2E-24 4.3E-29 198.1 19.3 226 176-416 78-347 (521)
26 KOG4152 Host cell transcriptio 99.9 1E-23 2.3E-28 197.7 18.4 256 151-433 17-333 (830)
27 COG3055 Uncharacterized protei 99.8 3.3E-17 7.1E-22 149.0 22.2 250 140-407 57-374 (381)
28 COG3055 Uncharacterized protei 99.6 5.7E-15 1.2E-19 134.6 15.6 192 207-421 29-267 (381)
29 PF13964 Kelch_6: Kelch motif 99.3 1E-11 2.3E-16 83.7 6.6 50 214-263 1-50 (50)
30 KOG2437 Muskelin [Signal trans 99.2 1.2E-11 2.6E-16 117.1 3.1 196 148-346 236-458 (723)
31 KOG2437 Muskelin [Signal trans 99.2 2E-11 4.4E-16 115.5 4.6 184 200-392 236-457 (723)
32 PF13964 Kelch_6: Kelch motif 99.2 9.1E-11 2E-15 79.0 6.5 50 262-312 1-50 (50)
33 PF01344 Kelch_1: Kelch motif; 99.0 2.2E-10 4.7E-15 76.2 3.7 47 214-260 1-47 (47)
34 PF13415 Kelch_3: Galactose ox 99.0 1.8E-09 3.9E-14 72.3 5.7 48 176-223 1-49 (49)
35 PF01344 Kelch_1: Kelch motif; 98.9 1.8E-09 3.8E-14 71.7 4.8 47 262-309 1-47 (47)
36 PF07646 Kelch_2: Kelch motif; 98.9 3.8E-09 8.3E-14 70.7 6.2 47 214-260 1-49 (49)
37 PF13415 Kelch_3: Galactose ox 98.9 3.7E-09 8E-14 70.8 6.1 47 224-270 1-48 (49)
38 PF13418 Kelch_4: Galactose ox 98.9 2E-09 4.2E-14 72.2 3.7 47 214-260 1-48 (49)
39 TIGR01640 F_box_assoc_1 F-box 98.9 1.3E-06 2.8E-11 79.4 23.1 184 193-390 14-215 (230)
40 PF07646 Kelch_2: Kelch motif; 98.8 1.1E-08 2.4E-13 68.4 6.4 48 262-309 1-49 (49)
41 PF07250 Glyoxal_oxid_N: Glyox 98.8 1.8E-07 4E-12 84.1 14.5 152 195-367 48-211 (243)
42 PF13418 Kelch_4: Galactose ox 98.8 1.4E-08 3E-13 68.0 4.8 48 262-310 1-49 (49)
43 smart00612 Kelch Kelch domain. 98.7 3E-08 6.4E-13 65.6 5.0 47 226-273 1-47 (47)
44 TIGR01640 F_box_assoc_1 F-box 98.7 1E-05 2.2E-10 73.5 22.7 201 141-356 14-230 (230)
45 PLN03215 ascorbic acid mannose 98.6 9.2E-06 2E-10 77.4 22.1 39 79-117 2-41 (373)
46 smart00612 Kelch Kelch domain. 98.6 4.8E-08 1E-12 64.6 4.9 47 178-225 1-47 (47)
47 PF13854 Kelch_5: Kelch motif 98.4 5E-07 1.1E-11 58.0 5.4 41 211-251 1-42 (42)
48 PLN02772 guanylate kinase 98.4 1.7E-06 3.7E-11 82.7 10.9 84 213-300 23-110 (398)
49 PF07250 Glyoxal_oxid_N: Glyox 98.4 4E-06 8.6E-11 75.5 12.6 148 143-311 48-211 (243)
50 PF13854 Kelch_5: Kelch motif 98.4 1.2E-06 2.6E-11 56.2 5.7 42 259-300 1-42 (42)
51 PLN02772 guanylate kinase 98.4 3.1E-06 6.6E-11 81.0 10.8 80 169-251 27-110 (398)
52 PF12937 F-box-like: F-box-lik 98.3 2.5E-07 5.4E-12 61.2 1.7 41 81-121 1-41 (47)
53 PRK11138 outer membrane biogen 98.0 0.011 2.3E-07 58.4 28.0 232 134-414 72-319 (394)
54 smart00256 FBOX A Receptor for 98.0 3.3E-06 7.2E-11 53.9 1.5 39 84-122 1-39 (41)
55 PF00646 F-box: F-box domain; 97.9 1.3E-06 2.9E-11 58.0 -1.7 41 81-121 3-43 (48)
56 KOG0281 Beta-TrCP (transducin 97.9 0.0002 4.4E-09 65.8 11.7 43 80-122 74-120 (499)
57 PF13360 PQQ_2: PQQ-like domai 97.8 0.008 1.7E-07 54.5 21.8 180 132-359 37-237 (238)
58 TIGR03300 assembly_YfgL outer 97.8 0.019 4E-07 56.3 25.8 205 133-390 147-369 (377)
59 PRK11138 outer membrane biogen 97.8 0.022 4.7E-07 56.2 26.3 204 133-389 162-383 (394)
60 PF13360 PQQ_2: PQQ-like domai 97.8 0.021 4.5E-07 51.7 24.0 195 173-415 33-238 (238)
61 TIGR03300 assembly_YfgL outer 97.8 0.046 1E-06 53.5 28.7 226 134-415 68-305 (377)
62 PF07893 DUF1668: Protein of u 97.7 0.0018 4E-08 62.3 16.0 130 223-366 75-221 (342)
63 PF03089 RAG2: Recombination a 97.7 0.0041 8.9E-08 56.1 16.2 105 226-344 39-173 (337)
64 PF08450 SGL: SMP-30/Gluconola 97.4 0.0084 1.8E-07 54.9 15.5 195 133-367 14-225 (246)
65 PF07893 DUF1668: Protein of u 97.4 0.0064 1.4E-07 58.5 15.1 120 175-308 75-217 (342)
66 PF03089 RAG2: Recombination a 97.1 0.0068 1.5E-07 54.7 11.0 105 180-284 42-176 (337)
67 PF05096 Glu_cyclase_2: Glutam 97.0 0.066 1.4E-06 48.8 16.3 179 175-390 54-250 (264)
68 PF12768 Rax2: Cortical protei 96.6 0.081 1.8E-06 49.1 14.7 121 227-363 1-130 (281)
69 PF08450 SGL: SMP-30/Gluconola 96.4 0.22 4.7E-06 45.5 16.0 173 176-388 11-200 (246)
70 KOG0274 Cdc4 and related F-box 96.3 0.57 1.2E-05 47.9 19.9 45 78-122 105-149 (537)
71 PF12768 Rax2: Cortical protei 96.3 0.071 1.5E-06 49.5 12.2 110 191-307 14-130 (281)
72 KOG2120 SCF ubiquitin ligase, 96.2 0.0023 5.1E-08 58.4 2.0 44 80-123 97-140 (419)
73 PRK11028 6-phosphogluconolacto 96.2 1.2 2.6E-05 42.6 23.2 235 140-418 11-269 (330)
74 TIGR02800 propeller_TolB tol-p 96.0 1.7 3.8E-05 42.9 23.2 144 193-362 214-362 (417)
75 TIGR03866 PQQ_ABC_repeats PQQ- 95.8 1.6 3.4E-05 40.5 19.8 140 178-357 2-148 (300)
76 cd00094 HX Hemopexin-like repe 95.6 1.3 2.8E-05 38.9 16.7 142 172-357 12-178 (194)
77 KOG2055 WD40 repeat protein [G 95.6 0.6 1.3E-05 45.2 14.9 180 177-406 225-416 (514)
78 TIGR03866 PQQ_ABC_repeats PQQ- 95.3 2.4 5.1E-05 39.2 24.9 175 140-358 10-191 (300)
79 KOG0310 Conserved WD40 repeat- 95.2 1.8 3.8E-05 42.3 16.8 248 80-393 34-301 (487)
80 COG4257 Vgb Streptogramin lyas 95.2 2.5 5.4E-05 38.6 17.7 183 142-362 125-313 (353)
81 cd00216 PQQ_DH Dehydrogenases 95.2 4.3 9.3E-05 41.3 26.5 206 135-360 65-327 (488)
82 PF09910 DUF2139: Uncharacteri 95.1 2.8 6.1E-05 38.7 19.3 168 169-356 39-232 (339)
83 PRK05137 tolB translocation pr 95.0 4.4 9.6E-05 40.4 23.5 145 193-362 226-374 (435)
84 KOG2055 WD40 repeat protein [G 94.9 0.89 1.9E-05 44.1 13.9 141 176-355 268-418 (514)
85 PRK11028 6-phosphogluconolacto 94.9 3.6 7.9E-05 39.2 26.4 218 176-431 91-328 (330)
86 PRK04792 tolB translocation pr 94.9 4.8 0.0001 40.4 25.3 145 193-362 242-390 (448)
87 PRK00178 tolB translocation pr 94.8 4.8 0.0001 40.1 22.8 145 193-363 223-372 (430)
88 PF10282 Lactonase: Lactonase, 94.8 4.2 9E-05 39.2 22.3 240 143-420 17-288 (345)
89 cd00200 WD40 WD40 domain, foun 94.7 3.1 6.8E-05 37.3 21.2 133 193-358 73-211 (289)
90 PF05096 Glu_cyclase_2: Glutam 94.4 0.53 1.1E-05 43.0 10.7 107 223-357 54-160 (264)
91 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.4 7.1 0.00015 40.1 23.6 116 173-304 66-197 (527)
92 PF10282 Lactonase: Lactonase, 94.2 2.4 5.3E-05 40.9 15.7 195 194-416 16-231 (345)
93 cd00216 PQQ_DH Dehydrogenases 94.2 6.7 0.00015 39.9 19.5 116 219-360 56-191 (488)
94 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.1 7.9 0.00017 39.8 24.4 208 133-357 71-336 (527)
95 PF02191 OLF: Olfactomedin-lik 94.0 4.4 9.6E-05 37.1 16.0 180 176-389 30-237 (250)
96 PF08268 FBA_3: F-box associat 93.9 1.7 3.6E-05 35.3 11.9 83 269-367 2-94 (129)
97 KOG1332 Vesicle coat complex C 93.5 3.6 7.7E-05 36.9 13.7 55 352-419 241-297 (299)
98 smart00284 OLF Olfactomedin-li 93.4 6.2 0.00014 36.0 17.2 182 176-389 34-242 (255)
99 PRK04922 tolB translocation pr 93.2 9.9 0.00021 37.9 23.8 144 193-362 228-376 (433)
100 KOG0299 U3 snoRNP-associated p 93.2 9.1 0.0002 37.4 18.4 206 173-428 210-431 (479)
101 PLN00181 protein SPA1-RELATED; 93.1 6.6 0.00014 42.6 18.4 173 193-407 555-738 (793)
102 COG3386 Gluconolactonase [Carb 93.0 8.2 0.00018 36.5 22.7 216 133-393 39-278 (307)
103 COG3823 Glutamine cyclotransfe 93.0 4.8 0.0001 35.3 13.4 186 170-390 49-248 (262)
104 KOG0310 Conserved WD40 repeat- 93.0 9.9 0.00022 37.3 17.5 146 175-357 78-228 (487)
105 cd00200 WD40 WD40 domain, foun 92.9 6.6 0.00014 35.1 21.8 143 177-357 105-252 (289)
106 PRK00178 tolB translocation pr 92.9 11 0.00024 37.5 22.2 146 141-307 223-372 (430)
107 PRK04792 tolB translocation pr 92.7 12 0.00026 37.6 21.8 148 141-307 242-391 (448)
108 COG1520 FOG: WD40-like repeat 92.7 10 0.00022 36.9 20.1 202 173-417 65-278 (370)
109 PF08268 FBA_3: F-box associat 92.6 1.9 4.1E-05 35.0 10.3 82 332-417 2-88 (129)
110 PRK04043 tolB translocation pr 92.4 13 0.00027 37.1 20.2 143 193-363 213-366 (419)
111 KOG2997 F-box protein FBX9 [Ge 92.3 0.045 9.7E-07 50.4 0.3 43 81-123 107-154 (366)
112 PLN03215 ascorbic acid mannose 92.2 3.2 7E-05 40.1 12.8 106 299-422 189-307 (373)
113 PRK05137 tolB translocation pr 92.2 13 0.00029 37.0 21.6 145 192-362 181-330 (435)
114 PLN02919 haloacid dehalogenase 92.2 22 0.00047 40.0 20.9 161 176-357 694-891 (1057)
115 PF03178 CPSF_A: CPSF A subuni 92.1 3.7 8E-05 39.1 13.4 120 241-389 62-190 (321)
116 TIGR02800 propeller_TolB tol-p 91.5 15 0.00033 36.1 21.0 146 192-362 169-318 (417)
117 PRK03629 tolB translocation pr 91.4 16 0.00036 36.4 23.2 167 193-391 223-393 (429)
118 KOG0316 Conserved WD40 repeat- 90.9 11 0.00025 33.6 18.2 170 193-407 81-257 (307)
119 KOG0316 Conserved WD40 repeat- 90.5 11 0.00024 33.8 13.0 132 193-358 39-177 (307)
120 PF03178 CPSF_A: CPSF A subuni 90.4 3.7 8.1E-05 39.1 11.5 106 193-312 62-173 (321)
121 PRK02889 tolB translocation pr 90.0 22 0.00047 35.4 22.1 144 193-362 220-368 (427)
122 TIGR03074 PQQ_membr_DH membran 90.0 31 0.00067 37.2 24.7 209 132-357 195-480 (764)
123 cd00094 HX Hemopexin-like repe 89.6 14 0.00029 32.4 14.7 49 335-391 110-167 (194)
124 PF14870 PSII_BNR: Photosynthe 89.5 19 0.00041 34.0 17.2 216 151-418 47-270 (302)
125 PRK13684 Ycf48-like protein; P 89.5 20 0.00044 34.3 19.0 162 195-391 154-322 (334)
126 PLN02919 haloacid dehalogenase 89.1 44 0.00095 37.6 28.0 212 133-363 581-842 (1057)
127 PRK04922 tolB translocation pr 89.1 26 0.00056 35.0 22.3 102 240-362 227-332 (433)
128 COG1520 FOG: WD40-like repeat 88.7 24 0.00053 34.2 24.1 192 140-363 77-279 (370)
129 PF06433 Me-amine-dh_H: Methyl 88.5 4.9 0.00011 38.2 10.2 71 272-358 249-324 (342)
130 PTZ00421 coronin; Provisional 87.8 34 0.00074 34.8 18.9 62 225-301 138-201 (493)
131 KOG1036 Mitotic spindle checkp 87.8 23 0.00051 32.9 15.9 130 194-357 36-166 (323)
132 PF02191 OLF: Olfactomedin-lik 87.5 23 0.00049 32.5 17.0 157 169-354 71-247 (250)
133 KOG0293 WD40 repeat-containing 86.9 31 0.00068 33.5 15.7 136 193-362 291-431 (519)
134 KOG2321 WD40 repeat protein [G 86.4 8.1 0.00018 38.9 10.7 120 213-357 132-261 (703)
135 PRK03629 tolB translocation pr 85.8 40 0.00086 33.6 21.8 147 191-362 177-327 (429)
136 TIGR03074 PQQ_membr_DH membran 84.3 65 0.0014 34.8 20.5 35 218-259 188-224 (764)
137 PF12217 End_beta_propel: Cata 84.2 33 0.00071 31.3 15.5 210 170-393 78-335 (367)
138 KOG0289 mRNA splicing factor [ 84.0 45 0.00097 32.6 15.0 123 217-368 350-476 (506)
139 KOG0291 WD40-repeat-containing 83.5 63 0.0014 34.0 22.0 153 222-419 359-517 (893)
140 KOG0646 WD40 repeat protein [G 83.3 49 0.0011 32.6 14.5 57 172-236 87-146 (476)
141 smart00284 OLF Olfactomedin-li 82.7 39 0.00084 31.0 15.6 157 169-354 76-252 (255)
142 KOG0266 WD40 repeat-containing 81.9 60 0.0013 32.6 16.5 134 192-356 224-366 (456)
143 KOG1332 Vesicle coat complex C 81.8 40 0.00086 30.5 16.3 102 226-363 176-296 (299)
144 COG4946 Uncharacterized protei 81.7 58 0.0013 32.3 17.5 145 140-306 286-439 (668)
145 PRK01742 tolB translocation pr 80.6 64 0.0014 32.1 20.0 161 193-391 228-391 (429)
146 COG4946 Uncharacterized protei 80.4 52 0.0011 32.7 13.2 167 191-390 57-243 (668)
147 PRK01742 tolB translocation pr 79.0 72 0.0016 31.7 16.6 138 142-306 229-369 (429)
148 KOG0296 Angio-associated migra 78.8 63 0.0014 30.9 19.3 143 176-357 75-223 (399)
149 PRK13684 Ycf48-like protein; P 77.6 69 0.0015 30.7 19.7 129 203-363 76-211 (334)
150 PTZ00421 coronin; Provisional 77.1 90 0.0019 31.8 21.6 151 178-361 139-297 (493)
151 TIGR02658 TTQ_MADH_Hv methylam 75.5 81 0.0018 30.5 21.5 62 140-206 76-141 (352)
152 PRK04043 tolB translocation pr 75.0 93 0.002 30.9 22.8 151 140-307 212-366 (419)
153 PF07433 DUF1513: Protein of u 74.5 78 0.0017 29.8 22.2 225 143-391 30-276 (305)
154 TIGR03032 conserved hypothetic 74.2 80 0.0017 29.9 17.6 122 240-391 122-260 (335)
155 PF15525 DUF4652: Domain of un 73.8 59 0.0013 28.1 10.9 76 187-265 82-164 (200)
156 KOG4341 F-box protein containi 73.3 2.9 6.4E-05 40.5 2.8 47 75-121 66-112 (483)
157 KOG4378 Nuclear protein COP1 [ 73.2 1.1E+02 0.0023 30.8 13.3 27 331-357 216-242 (673)
158 PF07734 FBA_1: F-box associat 72.1 59 0.0013 27.4 10.9 81 221-306 2-91 (164)
159 KOG4499 Ca2+-binding protein R 72.1 42 0.00091 30.2 9.4 36 333-368 220-255 (310)
160 TIGR02658 TTQ_MADH_Hv methylam 72.0 99 0.0021 29.9 25.5 104 141-255 27-142 (352)
161 KOG4378 Nuclear protein COP1 [ 70.6 76 0.0016 31.7 11.5 90 243-356 189-282 (673)
162 PLN00181 protein SPA1-RELATED; 70.3 1.7E+02 0.0036 31.9 24.5 144 176-356 587-740 (793)
163 PTZ00420 coronin; Provisional 69.1 1.5E+02 0.0032 30.8 19.5 67 334-407 177-248 (568)
164 PF02897 Peptidase_S9_N: Proly 68.6 1.2E+02 0.0027 29.7 17.0 143 193-362 252-412 (414)
165 KOG2048 WD40 repeat protein [G 68.4 1.3E+02 0.0028 31.2 13.1 154 175-361 392-558 (691)
166 PRK02889 tolB translocation pr 68.1 1.3E+02 0.0029 29.8 21.0 145 193-362 176-324 (427)
167 KOG0266 WD40 repeat-containing 66.2 1.5E+02 0.0033 29.8 17.0 105 224-358 214-322 (456)
168 COG4257 Vgb Streptogramin lyas 65.2 1.2E+02 0.0026 28.2 17.9 181 143-362 85-270 (353)
169 COG3386 Gluconolactonase [Carb 63.8 1.3E+02 0.0029 28.4 18.8 143 142-298 86-243 (307)
170 KOG2321 WD40 repeat protein [G 63.4 61 0.0013 33.0 9.5 107 177-302 146-262 (703)
171 KOG0281 Beta-TrCP (transducin 61.5 1.5E+02 0.0033 28.3 11.7 91 241-356 340-430 (499)
172 KOG0772 Uncharacterized conser 61.5 1.9E+02 0.0041 29.3 15.2 78 332-420 372-454 (641)
173 PF14870 PSII_BNR: Photosynthe 61.4 1.5E+02 0.0032 28.0 15.3 172 176-389 27-204 (302)
174 PTZ00420 coronin; Provisional 60.8 2.1E+02 0.0046 29.7 21.1 153 178-362 139-301 (568)
175 PF13859 BNR_3: BNR repeat-lik 60.6 1.5E+02 0.0034 28.0 13.4 189 218-420 2-217 (310)
176 PLN00033 photosystem II stabil 60.3 1.8E+02 0.0039 28.7 22.9 196 173-417 143-364 (398)
177 KOG2048 WD40 repeat protein [G 58.8 2.3E+02 0.0051 29.5 22.5 89 331-431 210-300 (691)
178 PLN00033 photosystem II stabil 58.1 2E+02 0.0043 28.4 19.7 49 334-390 337-389 (398)
179 KOG0291 WD40-repeat-containing 57.9 2.6E+02 0.0056 29.8 19.6 151 219-408 311-467 (893)
180 PF06433 Me-amine-dh_H: Methyl 56.3 1.9E+02 0.0041 27.7 12.3 132 141-278 67-210 (342)
181 KOG0285 Pleiotropic regulator 55.8 2E+02 0.0043 27.7 17.4 33 330-362 365-398 (460)
182 COG0823 TolB Periplasmic compo 55.6 2.2E+02 0.0049 28.3 13.2 145 194-363 219-368 (425)
183 KOG0286 G-protein beta subunit 55.2 1.8E+02 0.0039 27.2 22.4 174 175-391 107-293 (343)
184 KOG1036 Mitotic spindle checkp 55.0 1.9E+02 0.004 27.2 14.6 65 268-355 60-125 (323)
185 KOG0305 Anaphase promoting com 54.9 2.4E+02 0.0053 28.5 13.7 164 194-392 198-365 (484)
186 KOG0289 mRNA splicing factor [ 54.7 2.2E+02 0.0049 28.1 17.9 112 176-310 358-474 (506)
187 PF03088 Str_synth: Strictosid 53.1 36 0.00077 25.6 4.8 24 345-368 36-60 (89)
188 KOG0278 Serine/threonine kinas 53.0 1.8E+02 0.004 26.5 11.2 133 192-353 164-296 (334)
189 cd00260 Sialidase Sialidases o 52.8 2.1E+02 0.0046 27.2 21.0 100 329-429 201-317 (351)
190 KOG0296 Angio-associated migra 52.1 2.3E+02 0.0049 27.3 16.3 103 224-357 75-181 (399)
191 KOG0306 WD40-repeat-containing 52.0 3.2E+02 0.007 29.1 15.1 168 194-407 44-219 (888)
192 KOG0272 U4/U6 small nuclear ri 50.7 2E+02 0.0044 28.2 10.4 124 270-429 312-437 (459)
193 PF13570 PQQ_3: PQQ-like domai 50.5 31 0.00066 21.1 3.6 25 330-355 16-40 (40)
194 PF08662 eIF2A: Eukaryotic tra 49.9 1.5E+02 0.0032 25.8 9.2 92 176-280 71-162 (194)
195 COG3823 Glutamine cyclotransfe 49.6 1.7E+02 0.0037 26.0 9.0 69 267-355 50-120 (262)
196 KOG0278 Serine/threonine kinas 49.2 2.1E+02 0.0046 26.1 12.7 142 240-416 164-308 (334)
197 KOG2111 Uncharacterized conser 48.9 2.4E+02 0.0052 26.7 14.1 184 176-393 58-258 (346)
198 KOG0282 mRNA splicing factor [ 48.6 2.3E+02 0.005 28.3 10.6 61 225-301 270-333 (503)
199 KOG0315 G-protein beta subunit 47.8 2.2E+02 0.0048 26.0 15.9 181 194-408 62-246 (311)
200 PF08662 eIF2A: Eukaryotic tra 46.3 1.6E+02 0.0035 25.6 8.8 61 336-407 72-133 (194)
201 COG2706 3-carboxymuconate cycl 45.8 2.8E+02 0.0061 26.6 25.2 156 240-418 166-332 (346)
202 KOG0263 Transcription initiati 44.8 4.1E+02 0.0088 28.2 12.5 107 172-299 541-650 (707)
203 KOG0282 mRNA splicing factor [ 44.7 1E+02 0.0023 30.6 7.7 84 334-428 268-360 (503)
204 KOG0279 G protein beta subunit 43.8 2.7E+02 0.0059 25.9 16.1 143 176-357 116-265 (315)
205 PF03022 MRJP: Major royal jel 43.5 2.8E+02 0.0061 25.9 11.0 79 272-363 11-106 (287)
206 PF07734 FBA_1: F-box associat 42.5 2E+02 0.0044 24.0 14.3 81 269-363 2-92 (164)
207 KOG0649 WD40 repeat protein [G 41.7 2.8E+02 0.006 25.3 14.2 154 203-391 99-264 (325)
208 COG4880 Secreted protein conta 41.7 3.6E+02 0.0079 26.7 13.4 58 189-251 402-459 (603)
209 PF13088 BNR_2: BNR repeat-lik 41.7 2.7E+02 0.0059 25.3 15.0 185 224-431 58-267 (275)
210 PF15492 Nbas_N: Neuroblastoma 41.3 3E+02 0.0064 25.6 11.5 14 382-395 158-171 (282)
211 PF14781 BBS2_N: Ciliary BBSom 40.6 1.9E+02 0.0042 23.6 7.5 28 123-151 3-30 (136)
212 KOG0274 Cdc4 and related F-box 40.3 4.4E+02 0.0095 27.3 21.7 163 191-391 309-472 (537)
213 KOG0649 WD40 repeat protein [G 40.1 2.9E+02 0.0063 25.2 13.4 89 250-361 98-193 (325)
214 COG3391 Uncharacterized conser 39.5 3.7E+02 0.0081 26.2 17.9 148 175-358 84-243 (381)
215 TIGR03118 PEPCTERM_chp_1 conse 39.5 3.4E+02 0.0074 25.7 12.5 107 240-359 161-284 (336)
216 PF15525 DUF4652: Domain of un 38.6 2.7E+02 0.0058 24.3 10.3 82 233-314 80-164 (200)
217 smart00564 PQQ beta-propeller 38.2 76 0.0016 18.0 3.9 27 332-359 3-31 (33)
218 KOG0268 Sof1-like rRNA process 37.8 3.8E+02 0.0083 25.9 10.0 70 336-419 284-353 (433)
219 PF12217 End_beta_propel: Cata 37.3 3.4E+02 0.0073 25.0 18.0 205 172-393 21-260 (367)
220 PF13013 F-box-like_2: F-box-l 37.2 34 0.00073 26.8 2.7 29 81-109 22-50 (109)
221 KOG3545 Olfactomedin and relat 36.8 3.3E+02 0.0072 24.8 17.8 156 176-361 30-209 (249)
222 PF02239 Cytochrom_D1: Cytochr 36.5 2.4E+02 0.0051 27.5 9.1 91 240-357 15-111 (369)
223 PF14583 Pectate_lyase22: Olig 36.1 4.3E+02 0.0093 25.9 10.5 258 117-418 47-337 (386)
224 KOG0265 U5 snRNP-specific prot 36.1 3.7E+02 0.0081 25.3 11.3 94 224-357 58-166 (338)
225 KOG0315 G-protein beta subunit 35.5 3.5E+02 0.0076 24.8 15.5 107 224-360 51-160 (311)
226 PF01011 PQQ: PQQ enzyme repea 34.9 1E+02 0.0022 18.6 4.1 24 337-361 2-27 (38)
227 PF02239 Cytochrom_D1: Cytochr 34.6 3.1E+02 0.0068 26.7 9.6 105 131-251 48-160 (369)
228 KOG1446 Histone H3 (Lys4) meth 33.3 4.2E+02 0.009 25.0 19.6 16 192-207 35-50 (311)
229 PF03022 MRJP: Major royal jel 33.2 4.1E+02 0.0089 24.8 20.8 205 176-390 11-254 (287)
230 KOG0294 WD40 repeat-containing 32.7 4.4E+02 0.0095 25.0 11.2 76 266-366 46-125 (362)
231 KOG0263 Transcription initiati 31.3 3.9E+02 0.0084 28.3 9.7 25 331-355 626-650 (707)
232 KOG0639 Transducin-like enhanc 31.1 1.8E+02 0.004 29.3 7.0 104 270-407 474-581 (705)
233 KOG0272 U4/U6 small nuclear ri 30.8 5.3E+02 0.012 25.4 11.7 135 223-392 313-451 (459)
234 KOG1517 Guanine nucleotide bin 30.8 3.6E+02 0.0079 30.1 9.6 111 253-388 1154-1284(1387)
235 KOG0639 Transducin-like enhanc 30.4 2.1E+02 0.0045 28.9 7.2 94 175-282 475-572 (705)
236 KOG2096 WD40 repeat protein [G 29.9 4.5E+02 0.0098 25.0 9.0 76 331-418 193-270 (420)
237 KOG0265 U5 snRNP-specific prot 29.2 4.9E+02 0.011 24.5 10.7 20 338-357 188-207 (338)
238 PF14781 BBS2_N: Ciliary BBSom 29.0 2.2E+02 0.0049 23.2 6.1 69 336-417 64-135 (136)
239 KOG3545 Olfactomedin and relat 27.7 4.7E+02 0.01 23.8 12.6 175 149-353 54-245 (249)
240 KOG3881 Uncharacterized conser 27.5 3.1E+02 0.0068 26.7 7.7 108 225-358 161-281 (412)
241 KOG0308 Conserved WD40 repeat- 27.5 4.8E+02 0.01 27.4 9.3 66 271-357 128-204 (735)
242 KOG3881 Uncharacterized conser 26.4 6.2E+02 0.013 24.7 16.2 148 177-356 161-322 (412)
243 KOG0286 G-protein beta subunit 25.7 5.7E+02 0.012 24.1 17.0 137 195-357 79-220 (343)
244 KOG0305 Anaphase promoting com 25.4 7.3E+02 0.016 25.2 10.6 91 242-356 198-290 (484)
245 PF02897 Peptidase_S9_N: Proly 24.4 6.7E+02 0.015 24.5 18.5 186 192-407 149-357 (414)
246 COG3391 Uncharacterized conser 23.6 6.9E+02 0.015 24.3 16.3 138 223-392 84-228 (381)
247 KOG0643 Translation initiation 23.4 6E+02 0.013 23.6 17.2 173 191-393 72-254 (327)
248 PF13859 BNR_3: BNR repeat-lik 23.4 6.4E+02 0.014 23.9 9.3 233 171-419 3-279 (310)
249 KOG1275 PAB-dependent poly(A) 23.2 2E+02 0.0044 31.3 6.1 114 263-406 137-253 (1118)
250 PF11768 DUF3312: Protein of u 23.1 8.4E+02 0.018 25.1 12.3 98 273-392 219-320 (545)
251 PF09910 DUF2139: Uncharacteri 21.9 6.8E+02 0.015 23.7 16.0 96 240-358 77-185 (339)
252 PF10650 zf-C3H1: Putative zin 20.0 56 0.0012 17.7 0.8 18 3-24 3-20 (23)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.1e-43 Score=358.61 Aligned_cols=280 Identities=29% Similarity=0.437 Sum_probs=244.9
Q ss_pred CcceeeeccccCccccEEEEeeccceEEEEecCCCcEEeCCCCCCccccccCCceEEEECCEEEEECCCCCCcccceeEE
Q 013929 117 SGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIY 196 (433)
Q Consensus 117 ~~~~~~~gg~~~~~~~~l~~~~~~~~~~~yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 196 (433)
.+.++.+||..+.. ...+.++.|||.++.|..+++||.+|.. .+++++++.||++||++.+....+.++
T Consensus 284 ~~~l~~vGG~~~~~-------~~~~~ve~yd~~~~~w~~~a~m~~~r~~----~~~~~~~~~lYv~GG~~~~~~~l~~ve 352 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQG-------QSLRSVECYDPKTNEWSSLAPMPSPRCR----VGVAVLNGKLYVVGGYDSGSDRLSSVE 352 (571)
T ss_pred CCeEEEECCCCCCC-------cccceeEEecCCcCcEeecCCCCccccc----ccEEEECCEEEEEccccCCCcccceEE
Confidence 46688888887622 1357889999999999999999999864 457889999999999975555778999
Q ss_pred EEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEECCEEE
Q 013929 197 RYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFY 276 (433)
Q Consensus 197 ~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~ly 276 (433)
+|||.+++|+.+++|+.+|..+++++++|.||++||+++. ..+.++++|||.+++|+.+++|+.+|.++++++++|+||
T Consensus 353 ~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iY 431 (571)
T KOG4441|consen 353 RYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLY 431 (571)
T ss_pred EecCCCCceeccCCccCccccceeEEECCEEEEEeccccc-cccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEE
Confidence 9999999999999999999999999999999999999976 578999999999999999999999999999999999999
Q ss_pred EEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCC-----CeEEEE
Q 013929 277 VIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD-----MEVRKY 351 (433)
Q Consensus 277 v~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~-----~~i~~y 351 (433)
++||.++.. ..++++++|||.+++|+.+++|+.+|.++ ++++.+++||++||.. ..+++|
T Consensus 432 i~GG~~~~~-~~l~sve~YDP~t~~W~~~~~M~~~R~~~--------------g~a~~~~~iYvvGG~~~~~~~~~VE~y 496 (571)
T KOG4441|consen 432 IIGGGDGSS-NCLNSVECYDPETNTWTLIAPMNTRRSGF--------------GVAVLNGKIYVVGGFDGTSALSSVERY 496 (571)
T ss_pred EEcCcCCCc-cccceEEEEcCCCCceeecCCcccccccc--------------eEEEECCEEEEECCccCCCccceEEEE
Confidence 999998543 38899999999999999999999999997 7999999999999854 468999
Q ss_pred eCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecCCCCCCceEecccCCCcEEEEEEEe
Q 013929 352 DKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSANFVYNCAVM 431 (433)
Q Consensus 352 d~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~W~~v~~~p~~~~~~~~~v~ 431 (433)
|+.+++|+.+.+|+.++.. +++++.+++||++||+++. .....+.+|++ .+++|+.+.++...+...+|+++
T Consensus 497 dp~~~~W~~v~~m~~~rs~-----~g~~~~~~~ly~vGG~~~~-~~l~~ve~ydp--~~d~W~~~~~~~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 497 DPETNQWTMVAPMTSPRSA-----VGVVVLGGKLYAVGGFDGN-NNLNTVECYDP--ETDTWTEVTEPESGRGGAGVAVI 568 (571)
T ss_pred cCCCCceeEcccCcccccc-----ccEEEECCEEEEEecccCc-cccceeEEcCC--CCCceeeCCCccccccCcceEEe
Confidence 9999999999999998863 6788999999999997655 46677887765 78999999995556665555554
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=4.7e-41 Score=341.10 Aligned_cols=250 Identities=16% Similarity=0.237 Sum_probs=215.8
Q ss_pred eEEEEecCCCcEEeCCCCCCccccccCCceEEEECCEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcceeeEE
Q 013929 142 EWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSA 221 (433)
Q Consensus 142 ~~~~yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~ 221 (433)
.++.|||.+++|..++++|.++.. +++++++++||++||........+++++|||.+++|..+++||.+|..++++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~----~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN----YASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc----eEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE
Confidence 578899999999999999998853 4568889999999997533345678999999999999999999999999999
Q ss_pred EeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEECCEEEEEccccCCC----------------
Q 013929 222 SLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSD---------------- 285 (433)
Q Consensus 222 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~---------------- 285 (433)
+++++||++||.++. ..++++++|||.+++|+.+++||.+|..+++++++|+||++||.++..
T Consensus 349 ~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 349 VIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred EECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 999999999998754 357889999999999999999999999999999999999999986321
Q ss_pred CcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCC------CeEEEEeCCC-CcE
Q 013929 286 SKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD------MEVRKYDKER-RLW 358 (433)
Q Consensus 286 ~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~------~~i~~yd~~~-~~W 358 (433)
...++++++|||.+++|+.+++|+.+|..+ ++++++|+||++||.. ..+++|||++ ++|
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~--------------~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W 493 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRP--------------GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW 493 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccC--------------cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCe
Confidence 113678999999999999999999999886 7899999999999853 3579999999 899
Q ss_pred EEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecCCCCCCceEecccCC
Q 013929 359 FTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQS 421 (433)
Q Consensus 359 ~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~W~~v~~~p~ 421 (433)
+.+++||.++.. +++++++|+||++||.+.. ..++.|++ .+++|+.+++--.
T Consensus 494 ~~~~~m~~~r~~-----~~~~~~~~~iyv~Gg~~~~----~~~e~yd~--~~~~W~~~~~~~~ 545 (557)
T PHA02713 494 ELITTTESRLSA-----LHTILHDNTIMMLHCYESY----MLQDTFNV--YTYEWNHICHQHS 545 (557)
T ss_pred eEccccCccccc-----ceeEEECCEEEEEeeecce----eehhhcCc--ccccccchhhhcC
Confidence 999999998863 7788899999999998552 34555555 7899999987544
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.4e-38 Score=318.82 Aligned_cols=235 Identities=29% Similarity=0.468 Sum_probs=211.1
Q ss_pred EECCEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCe
Q 013929 174 AVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTW 253 (433)
Q Consensus 174 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 253 (433)
...+.||++||........+.+..|||.+++|..+++||.+|..+++++++++||++||++.....++++++||+.+++|
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCce
Confidence 44688999999976556788899999999999999999999999999999999999999994335789999999999999
Q ss_pred EEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEE
Q 013929 254 KVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAV 333 (433)
Q Consensus 254 ~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~ 333 (433)
+.+++|+.+|..+++++++|.||++||.++ ...++++|+||+.+++|+.+++|+.+|.++ ++++
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg--~~~l~svE~YDp~~~~W~~va~m~~~r~~~--------------gv~~ 425 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDG--EKSLNSVECYDPVTNKWTPVAPMLTRRSGH--------------GVAV 425 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEecccc--ccccccEEEecCCCCcccccCCCCcceeee--------------EEEE
Confidence 999999999999999999999999999995 457889999999999999999999999987 8999
Q ss_pred ECCEEEEEec------CCCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecC
Q 013929 334 VNNELYAADY------ADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPS 407 (433)
Q Consensus 334 ~~~~ly~~gg------~~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~ 407 (433)
++|+||++|| ..+++++|||.+++|+.+++|+.+|.. ++++.++++||++||.+. ......++.|++
T Consensus 426 ~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-----~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp- 498 (571)
T KOG4441|consen 426 LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-----FGVAVLNGKIYVVGGFDG-TSALSSVERYDP- 498 (571)
T ss_pred ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-----ceEEEECCEEEEECCccC-CCccceEEEEcC-
Confidence 9999999998 337899999999999999999999963 778899999999999987 334445666666
Q ss_pred CCCCCceEecccCCCcEEEEEEEec
Q 013929 408 EGPPQWNLLARKQSANFVYNCAVMG 432 (433)
Q Consensus 408 ~~~~~W~~v~~~p~~~~~~~~~v~~ 432 (433)
.+++|+.+++|+.+|..+++++++
T Consensus 499 -~~~~W~~v~~m~~~rs~~g~~~~~ 522 (571)
T KOG4441|consen 499 -ETNQWTMVAPMTSPRSAVGVVVLG 522 (571)
T ss_pred -CCCceeEcccCccccccccEEEEC
Confidence 789999999999999999888865
No 4
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=5.7e-37 Score=295.58 Aligned_cols=259 Identities=22% Similarity=0.409 Sum_probs=203.1
Q ss_pred cCCCcEEeCCC----CCCccccccCCceEEEECCEEEEECCCCCC-cccceeEEEEEcCCCceecCCCCC-CCc---cee
Q 013929 148 PIRRRWMHLPR----MTSNECFMCSDKESLAVGTELLVFGRELTA-HHISHVIYRYSILTNSWSSGMRMN-APR---CLF 218 (433)
Q Consensus 148 ~~~~~W~~l~~----~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~yd~~t~~W~~~~~~p-~~r---~~~ 218 (433)
+...+|.++.. +|.+|.. +++++++++|||+||.... ....+++++||+.+++|+.+++++ .+| ..|
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~----h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~ 79 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCS----HGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGV 79 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCc----ceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCce
Confidence 35678999976 6777754 4568889999999998532 234578999999999999988763 343 378
Q ss_pred eEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCC-----CCCCcceeEEEECCEEEEEccccCCC----Cccc
Q 013929 219 GSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSM-----KNPRKMCSGVFMDGKFYVIGGIGGSD----SKVL 289 (433)
Q Consensus 219 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-----p~~r~~~~~~~~~g~lyv~GG~~~~~----~~~~ 289 (433)
++++++++||||||.+.. ..++++++||+.+++|+.++++ |.+|..|++++.+++|||+||.+... ...+
T Consensus 80 ~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred EEEEECCEEEEECCCCCC-CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCccc
Confidence 899999999999998765 3578999999999999999877 78899999999999999999986321 1245
Q ss_pred ceEEEEECCCCceEecCCCC---CCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecC-------------CCeEEEEeC
Q 013929 290 TCGEEYDLETETWTEIPNMS---PARGGAARGTEMPASAEAPPLVAVVNNELYAADYA-------------DMEVRKYDK 353 (433)
Q Consensus 290 ~~v~~yd~~t~~W~~~~~~p---~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~-------------~~~i~~yd~ 353 (433)
+++++||+++++|+.++++. .+|.++ ++++++++||++||. .+++++||+
T Consensus 159 ~~v~~yd~~~~~W~~l~~~~~~~~~r~~~--------------~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~ 224 (341)
T PLN02153 159 RTIEAYNIADGKWVQLPDPGENFEKRGGA--------------GFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDP 224 (341)
T ss_pred ceEEEEECCCCeEeeCCCCCCCCCCCCcc--------------eEEEECCeEEEEeccccccccCCccceecCceEEEEc
Confidence 78999999999999998653 677775 688899999999873 257999999
Q ss_pred CCCcEEEecc---CCCcccCCCcccEEEEEeCCEEEEEcCCCCCC------CCeeEEEEeecCCCCCCceEec-----cc
Q 013929 354 ERRLWFTIGR---LPERANSMNGWGLAFRACGDRLIVIGGPKASG------EGFIELNSWVPSEGPPQWNLLA-----RK 419 (433)
Q Consensus 354 ~~~~W~~v~~---lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~------~~~~~~~~~~~~~~~~~W~~v~-----~~ 419 (433)
.+++|++++. +|.++. +++++.++++||||||..... ......++|.||+.+++|+.+. ++
T Consensus 225 ~~~~W~~~~~~g~~P~~r~-----~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~ 299 (341)
T PLN02153 225 ASGKWTEVETTGAKPSARS-----VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAM 299 (341)
T ss_pred CCCcEEeccccCCCCCCcc-----eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCC
Confidence 9999999974 465553 377888999999999974221 1112235677777899999985 67
Q ss_pred CCCcEEEEEEE
Q 013929 420 QSANFVYNCAV 430 (433)
Q Consensus 420 p~~~~~~~~~v 430 (433)
|.++..|+++.
T Consensus 300 pr~~~~~~~~~ 310 (341)
T PLN02153 300 PRGWTAYTTAT 310 (341)
T ss_pred CCccccccccc
Confidence 77776555543
No 5
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=5.7e-37 Score=295.55 Aligned_cols=268 Identities=22% Similarity=0.286 Sum_probs=206.6
Q ss_pred hhcCcceeeeccccCccccEEEEeeccceEEEEecCCCcEEeCCCCCC-ccccccCCceEEEECCEEEEECCCCCCcccc
Q 013929 114 LIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTS-NECFMCSDKESLAVGTELLVFGRELTAHHIS 192 (433)
Q Consensus 114 ll~~~~~~~~gg~~~~~~~~l~~~~~~~~~~~yd~~~~~W~~l~~~p~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~ 192 (433)
++.++.+|++||....... ..+++++||+.+++|..+++++. ++. .+..+++++++++||+|||.... ...
T Consensus 29 ~~~~~~iyv~GG~~~~~~~------~~~~~~~yd~~~~~W~~~~~~~~~p~~-~~~~~~~~~~~~~iyv~GG~~~~-~~~ 100 (341)
T PLN02153 29 AVVGDKLYSFGGELKPNEH------IDKDLYVFDFNTHTWSIAPANGDVPRI-SCLGVRMVAVGTKLYIFGGRDEK-REF 100 (341)
T ss_pred EEECCEEEEECCccCCCCc------eeCcEEEEECCCCEEEEcCccCCCCCC-ccCceEEEEECCEEEEECCCCCC-Ccc
Confidence 3467899999998543211 23679999999999999987753 332 22245678889999999998543 356
Q ss_pred eeEEEEEcCCCceecCCCC-----CCCcceeeEEEeCCEEEEEccCCCCC-----CcCCceEEEeCCCCCeEEcCCCC--
Q 013929 193 HVIYRYSILTNSWSSGMRM-----NAPRCLFGSASLGEIAILAGGSDLEG-----NILSSAEMYNSETQTWKVLPSMK-- 260 (433)
Q Consensus 193 ~~~~~yd~~t~~W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~~yd~~t~~W~~~~~~p-- 260 (433)
+++++||+.+++|+.++++ |.+|..|++++.+++|||+||.+... ..++++++||+.+++|+.++.+.
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~ 180 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGEN 180 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCC
Confidence 7899999999999998877 88999999999999999999986432 23578999999999999998764
Q ss_pred -CCCcceeEEEECCEEEEEccccCC------CCcccceEEEEECCCCceEecCC---CCCCCCCCCCCCcCCCCcCCCCE
Q 013929 261 -NPRKMCSGVFMDGKFYVIGGIGGS------DSKVLTCGEEYDLETETWTEIPN---MSPARGGAARGTEMPASAEAPPL 330 (433)
Q Consensus 261 -~~r~~~~~~~~~g~lyv~GG~~~~------~~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~~~~~~~~ 330 (433)
.+|..+++++++++||++||.... .....+++++||+.+++|++++. +|.+|..+ +
T Consensus 181 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~--------------~ 246 (341)
T PLN02153 181 FEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVF--------------A 246 (341)
T ss_pred CCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCccee--------------e
Confidence 678999999999999999987521 12235789999999999999874 67788876 7
Q ss_pred EEEECCEEEEEecCC--------------CeEEEEeCCCCcEEEec-----cCCCcccCCCcccEEEEEeCCEEEEEcCC
Q 013929 331 VAVVNNELYAADYAD--------------MEVRKYDKERRLWFTIG-----RLPERANSMNGWGLAFRACGDRLIVIGGP 391 (433)
Q Consensus 331 ~~~~~~~ly~~gg~~--------------~~i~~yd~~~~~W~~v~-----~lp~~~~~~~~~~~~~~~~~~~l~v~GG~ 391 (433)
+++++++||++||.. +++++||+++++|+.+. ++|..+. +++++.+..+++||++||.
T Consensus 247 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~---~~~~~~v~~~~~~~~~gG~ 323 (341)
T PLN02153 247 HAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWT---AYTTATVYGKNGLLMHGGK 323 (341)
T ss_pred eEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccc---cccccccCCcceEEEEcCc
Confidence 889999999999952 48999999999999986 3333332 1223333344589999999
Q ss_pred CCCCCCeeEEEEeec
Q 013929 392 KASGEGFIELNSWVP 406 (433)
Q Consensus 392 ~~~~~~~~~~~~~~~ 406 (433)
........++..|..
T Consensus 324 ~~~~~~~~~~~~~~~ 338 (341)
T PLN02153 324 LPTNERTDDLYFYAV 338 (341)
T ss_pred CCCCccccceEEEec
Confidence 776555555555543
No 6
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.1e-35 Score=297.01 Aligned_cols=278 Identities=21% Similarity=0.367 Sum_probs=213.7
Q ss_pred cCcceeeeccccCccccEEEEeeccce--EEEEecCC----CcEEeCCC---CCCccccccCCceEEEECCEEEEECCCC
Q 013929 116 RSGELYRLRRLNGVIEHWVYFSCHLLE--WEAFDPIR----RRWMHLPR---MTSNECFMCSDKESLAVGTELLVFGREL 186 (433)
Q Consensus 116 ~~~~~~~~gg~~~~~~~~l~~~~~~~~--~~~yd~~~----~~W~~l~~---~p~~~~~~~~~~~~~~~~~~iyv~GG~~ 186 (433)
.+++|+-++|..+.. .++ ++.+||.+ ++|..+.+ +|.+|.. ++++++++.||++||..
T Consensus 119 ~~~~ivgf~G~~~~~---------~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~----h~~~~~~~~iyv~GG~~ 185 (470)
T PLN02193 119 QGGKIVGFHGRSTDV---------LHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCS----HGIAQVGNKIYSFGGEF 185 (470)
T ss_pred cCCeEEEEeccCCCc---------EEeeEEEEecCCChhhhceEEEcccCCCCCCCccc----cEEEEECCEEEEECCcC
Confidence 356666665544332 223 34447644 89999876 4667754 45688899999999975
Q ss_pred CCc-ccceeEEEEEcCCCceecCCC---CCC-CcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCC--
Q 013929 187 TAH-HISHVIYRYSILTNSWSSGMR---MNA-PRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSM-- 259 (433)
Q Consensus 187 ~~~-~~~~~~~~yd~~t~~W~~~~~---~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-- 259 (433)
... ...+++++||+.+++|+.+++ +|. +|..|++++++++|||+||.+.. ..++++++||+.+++|++++++
T Consensus 186 ~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~ 264 (470)
T PLN02193 186 TPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEE 264 (470)
T ss_pred CCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCC
Confidence 332 244679999999999998764 343 35688999999999999998764 4578999999999999999887
Q ss_pred -CCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCC---CCCCCCCCCCCCcCCCCcCCCCEEEEEC
Q 013929 260 -KNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPN---MSPARGGAARGTEMPASAEAPPLVAVVN 335 (433)
Q Consensus 260 -p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~~~~~~~~~~~~~ 335 (433)
|.+|..|++++.+++||++||.++ ...++++++||+.+++|+.++. ++.+|.++ ++++++
T Consensus 265 ~P~~R~~h~~~~~~~~iYv~GG~~~--~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~--------------~~~~~~ 328 (470)
T PLN02193 265 GPTPRSFHSMAADEENVYVFGGVSA--TARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA--------------GLEVVQ 328 (470)
T ss_pred CCCCccceEEEEECCEEEEECCCCC--CCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc--------------EEEEEC
Confidence 889999999999999999999874 3357889999999999999874 56677775 788899
Q ss_pred CEEEEEecCC----CeEEEEeCCCCcEEEeccC---CCcccCCCcccEEEEEeCCEEEEEcCCCCCC------CCeeEEE
Q 013929 336 NELYAADYAD----MEVRKYDKERRLWFTIGRL---PERANSMNGWGLAFRACGDRLIVIGGPKASG------EGFIELN 402 (433)
Q Consensus 336 ~~ly~~gg~~----~~i~~yd~~~~~W~~v~~l---p~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~------~~~~~~~ 402 (433)
++||++||.. +++++||+.+++|+++..+ |.+|. +++++.++++|||+||..... .......
T Consensus 329 gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~-----~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~nd 403 (470)
T PLN02193 329 GKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERS-----VFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDG 403 (470)
T ss_pred CcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcc-----eeEEEEECCEEEEECCccCCccccccCccceecc
Confidence 9999999854 6899999999999999765 55543 367788999999999985421 1112234
Q ss_pred EeecCCCCCCceEeccc------CCCcEEEEE
Q 013929 403 SWVPSEGPPQWNLLARK------QSANFVYNC 428 (433)
Q Consensus 403 ~~~~~~~~~~W~~v~~~------p~~~~~~~~ 428 (433)
+|.+|+.+++|+.++.+ |.+|..|++
T Consensus 404 v~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~ 435 (470)
T PLN02193 404 TFALDTETLQWERLDKFGEEEETPSSRGWTAS 435 (470)
T ss_pred EEEEEcCcCEEEEcccCCCCCCCCCCCccccc
Confidence 67777789999999754 567776643
No 7
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=7.4e-36 Score=288.76 Aligned_cols=260 Identities=18% Similarity=0.259 Sum_probs=198.3
Q ss_pred hcCcceeeeccccCccccEEEEeeccceEEEEec--CCCcEEeCCCCCC-ccccccCCceEEEECCEEEEECCCCCCc--
Q 013929 115 IRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDP--IRRRWMHLPRMTS-NECFMCSDKESLAVGTELLVFGRELTAH-- 189 (433)
Q Consensus 115 l~~~~~~~~gg~~~~~~~~l~~~~~~~~~~~yd~--~~~~W~~l~~~p~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~-- 189 (433)
+.++.+|++||... ++++.||+ .+++|..+++||. +|.. +++++++++|||+||.....
T Consensus 15 ~~~~~vyv~GG~~~------------~~~~~~d~~~~~~~W~~l~~~p~~~R~~----~~~~~~~~~iYv~GG~~~~~~~ 78 (346)
T TIGR03547 15 IIGDKVYVGLGSAG------------TSWYKLDLKKPSKGWQKIADFPGGPRNQ----AVAAAIDGKLYVFGGIGKANSE 78 (346)
T ss_pred EECCEEEEEccccC------------CeeEEEECCCCCCCceECCCCCCCCccc----ceEEEECCEEEEEeCCCCCCCC
Confidence 56899999998632 35677885 6789999999984 6643 45688999999999985321
Q ss_pred ---ccceeEEEEEcCCCceecCC-CCCCCcceeeEE-EeCCEEEEEccCCCCC---------------------------
Q 013929 190 ---HISHVIYRYSILTNSWSSGM-RMNAPRCLFGSA-SLGEIAILAGGSDLEG--------------------------- 237 (433)
Q Consensus 190 ---~~~~~~~~yd~~t~~W~~~~-~~p~~r~~~~~~-~~~~~iyv~GG~~~~~--------------------------- 237 (433)
...+++++|||.+++|+.++ ++|.+|..++++ +++++|||+||.+...
T Consensus 79 ~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (346)
T TIGR03547 79 GSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFS 158 (346)
T ss_pred CcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhC
Confidence 24678999999999999987 467777777766 7899999999986320
Q ss_pred ------CcCCceEEEeCCCCCeEEcCCCCC-CCcceeEEEECCEEEEEccccCCCCcccceEEEEE--CCCCceEecCCC
Q 013929 238 ------NILSSAEMYNSETQTWKVLPSMKN-PRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYD--LETETWTEIPNM 308 (433)
Q Consensus 238 ------~~~~~~~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd--~~t~~W~~~~~~ 308 (433)
...+.+++||+.+++|+.+++||. +|..+++++++++||++||..... ....+++.|| +.+++|+.+++|
T Consensus 159 ~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~y~~~~~~~~W~~~~~m 237 (346)
T TIGR03547 159 QPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPG-LRTAEVKQYLFTGGKLEWNKLPPL 237 (346)
T ss_pred CChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCC-ccchheEEEEecCCCceeeecCCC
Confidence 013789999999999999999996 688888999999999999986322 2234455555 577899999999
Q ss_pred CCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCC----------------------CeEEEEeCCCCcEEEeccCCC
Q 013929 309 SPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD----------------------MEVRKYDKERRLWFTIGRLPE 366 (433)
Q Consensus 309 p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~----------------------~~i~~yd~~~~~W~~v~~lp~ 366 (433)
|.+|...- .......+++++++||++||.. ..+++||+++++|+.+.+||.
T Consensus 238 ~~~r~~~~-------~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~ 310 (346)
T TIGR03547 238 PPPKSSSQ-------EGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQ 310 (346)
T ss_pred CCCCCCcc-------ccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCC
Confidence 87763200 0000113678999999999853 257899999999999999998
Q ss_pred cccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEE
Q 013929 367 RANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNS 403 (433)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~ 403 (433)
++. +++++.++++|||+||....+.....+..
T Consensus 311 ~~~-----~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 342 (346)
T TIGR03547 311 GLA-----YGVSVSWNNGVLLIGGENSGGKAVTDVYL 342 (346)
T ss_pred Cce-----eeEEEEcCCEEEEEeccCCCCCEeeeEEE
Confidence 874 25667899999999999765555555543
No 8
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=5e-36 Score=306.39 Aligned_cols=259 Identities=16% Similarity=0.215 Sum_probs=216.4
Q ss_pred eEEEEecCCCcEEeCCCCCCccccccCCceEEEECCEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcceeeEE
Q 013929 142 EWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSA 221 (433)
Q Consensus 142 ~~~~yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~ 221 (433)
....|++..++|..+++.|... .++++++++.||++||........+++++||+.+++|..+++||.+|..|+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~ 339 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVY-----CFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT 339 (534)
T ss_pred eeeecchhhhhcccccCccccc-----cceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE
Confidence 3456888899999987766432 23568899999999998655556678999999999999999999999999999
Q ss_pred EeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc
Q 013929 222 SLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET 301 (433)
Q Consensus 222 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~ 301 (433)
+++++||++||.+.. ...+++++||+.+++|+.++++|.+|..+++++++++||++||.... ...++++++||+.+++
T Consensus 340 ~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~-~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 340 VFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKN-DELLKTVECFSLNTNK 417 (534)
T ss_pred EECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCC-CcccceEEEEeCCCCe
Confidence 999999999998743 45788999999999999999999999999999999999999997632 3357889999999999
Q ss_pred eEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCC--------CeEEEEeCCCCcEEEeccCCCcccCCCc
Q 013929 302 WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD--------MEVRKYDKERRLWFTIGRLPERANSMNG 373 (433)
Q Consensus 302 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~--------~~i~~yd~~~~~W~~v~~lp~~~~~~~~ 373 (433)
|+.++++|.+|.++ ++++.+++||++||.. +.+++||+.+++|+.++++|.++.
T Consensus 418 W~~~~~~p~~r~~~--------------~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~---- 479 (534)
T PHA03098 418 WSKGSPLPISHYGG--------------CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRI---- 479 (534)
T ss_pred eeecCCCCccccCc--------------eEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccc----
Confidence 99999999999886 7888999999999853 359999999999999999887764
Q ss_pred ccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecCCCCCCceEecccCCCcEEEEEE
Q 013929 374 WGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSANFVYNCA 429 (433)
Q Consensus 374 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~W~~v~~~p~~~~~~~~~ 429 (433)
+++++.++++||++||..... ....+.+ ||+.+++|+.++.+|.....+.+-
T Consensus 480 -~~~~~~~~~~iyv~GG~~~~~-~~~~v~~--yd~~~~~W~~~~~~p~~~~~~~~~ 531 (534)
T PHA03098 480 -NASLCIFNNKIYVVGGDKYEY-YINEIEV--YDDKTNTWTLFCKFPKVIGSLEKN 531 (534)
T ss_pred -cceEEEECCEEEEEcCCcCCc-ccceeEE--EeCCCCEEEecCCCcccccceeee
Confidence 356677899999999986532 2334444 455789999999988766555443
No 9
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=7.7e-36 Score=303.02 Aligned_cols=217 Identities=21% Similarity=0.268 Sum_probs=188.8
Q ss_pred eeEEEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEEC
Q 013929 193 HVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMD 272 (433)
Q Consensus 193 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 272 (433)
..+++|||.+++|..+++||.+|..+++++++++|||+||.+......+++++||+.+++|.++++||.+|..+++++++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 46899999999999999999999999999999999999998643345789999999999999999999999999999999
Q ss_pred CEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCC-------
Q 013929 273 GKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD------- 345 (433)
Q Consensus 273 g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~------- 345 (433)
|+||++||.++. ..++++++||+.+++|+.+++||.+|..+ ++++++|+||++||..
T Consensus 352 g~IYviGG~~~~--~~~~sve~Ydp~~~~W~~~~~mp~~r~~~--------------~~~~~~g~IYviGG~~~~~~~~~ 415 (557)
T PHA02713 352 DTIYAIGGQNGT--NVERTIECYTMGDDKWKMLPDMPIALSSY--------------GMCVLDQYIYIIGGRTEHIDYTS 415 (557)
T ss_pred CEEEEECCcCCC--CCCceEEEEECCCCeEEECCCCCcccccc--------------cEEEECCEEEEEeCCCccccccc
Confidence 999999998743 35778999999999999999999999986 7889999999999853
Q ss_pred ----------------CeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecCCC
Q 013929 346 ----------------MEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEG 409 (433)
Q Consensus 346 ----------------~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~ 409 (433)
+.+++|||++++|+.+++|+.++.. +++++++|+|||+||.+........+..|++ .
T Consensus 416 ~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-----~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp--~ 488 (557)
T PHA02713 416 VHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-----PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNT--N 488 (557)
T ss_pred ccccccccccccccccceEEEECCCCCeEeecCCCCccccc-----CcEEEECCEEEEEeCCCCCCccceeEEEecC--C
Confidence 4699999999999999999988853 6678999999999998643222223445555 6
Q ss_pred C-CCceEecccCCCcEEEEEEEec
Q 013929 410 P-PQWNLLARKQSANFVYNCAVMG 432 (433)
Q Consensus 410 ~-~~W~~v~~~p~~~~~~~~~v~~ 432 (433)
+ ++|+.+++||..|..+++++++
T Consensus 489 ~~~~W~~~~~m~~~r~~~~~~~~~ 512 (557)
T PHA02713 489 TYNGWELITTTESRLSALHTILHD 512 (557)
T ss_pred CCCCeeEccccCcccccceeEEEC
Confidence 7 7999999999999999988875
No 10
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=2.7e-35 Score=281.93 Aligned_cols=259 Identities=16% Similarity=0.182 Sum_probs=201.7
Q ss_pred hhcCcceeeeccccCccccEEEE--eeccceEEEEe-cCC-CcEEeCCCCCCccccccCCceEEEECCEEEEECCCCCCc
Q 013929 114 LIRSGELYRLRRLNGVIEHWVYF--SCHLLEWEAFD-PIR-RRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAH 189 (433)
Q Consensus 114 ll~~~~~~~~gg~~~~~~~~l~~--~~~~~~~~~yd-~~~-~~W~~l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~ 189 (433)
.+.++.+|++||.+....++--. ....++++.|+ +.. .+|..+++||.+|..+ +++++++.||++||... .
T Consensus 10 ~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~----~~~~~~~~lyviGG~~~-~ 84 (323)
T TIGR03548 10 GIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYG----ASVSVENGIYYIGGSNS-S 84 (323)
T ss_pred eEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccce----EEEEECCEEEEEcCCCC-C
Confidence 45678999999987653221000 01234677775 432 3799999999988543 35778999999999854 3
Q ss_pred ccceeEEEEEcCCCce----ecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCC-CCc
Q 013929 190 HISHVIYRYSILTNSW----SSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKN-PRK 264 (433)
Q Consensus 190 ~~~~~~~~yd~~t~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~-~r~ 264 (433)
...+++++||+.+++| +.+++||.+|..|++++++++|||+||.... ...+++++||+.+++|++++++|. +|.
T Consensus 85 ~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~~r~ 163 (323)
T TIGR03548 85 ERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELPDFPGEPRV 163 (323)
T ss_pred CCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECCCCCCCCCC
Confidence 3567899999999998 7889999999999999999999999997543 357899999999999999999874 788
Q ss_pred ceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCC---CC--CCCCCCCcCCCCcCCCCEEEEECCEEE
Q 013929 265 MCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSP---AR--GGAARGTEMPASAEAPPLVAVVNNELY 339 (433)
Q Consensus 265 ~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~---~r--~~~~~~~~~~~~~~~~~~~~~~~~~ly 339 (433)
.+.+++++++||++||.++. ...++++||+++++|+.+++++. ++ ..+ .++++.+++||
T Consensus 164 ~~~~~~~~~~iYv~GG~~~~---~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~-------------~~~~~~~~~iy 227 (323)
T TIGR03548 164 QPVCVKLQNELYVFGGGSNI---AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGA-------------ASIKINESLLL 227 (323)
T ss_pred cceEEEECCEEEEEcCCCCc---cccceEEEecCCCeeEECCCCCCCCCceeccce-------------eEEEECCCEEE
Confidence 88888999999999998632 24568999999999999987632 22 222 13455689999
Q ss_pred EEecCC-------------------------------------CeEEEEeCCCCcEEEeccCCC-cccCCCcccEEEEEe
Q 013929 340 AADYAD-------------------------------------MEVRKYDKERRLWFTIGRLPE-RANSMNGWGLAFRAC 381 (433)
Q Consensus 340 ~~gg~~-------------------------------------~~i~~yd~~~~~W~~v~~lp~-~~~~~~~~~~~~~~~ 381 (433)
++||.. +.+++||+.+++|+.++++|. ++. +++++.+
T Consensus 228 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~-----~~~~~~~ 302 (323)
T TIGR03548 228 CIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARC-----GAALLLT 302 (323)
T ss_pred EECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccC-----chheEEE
Confidence 999854 469999999999999998874 443 4778899
Q ss_pred CCEEEEEcCCCCCCCCee
Q 013929 382 GDRLIVIGGPKASGEGFI 399 (433)
Q Consensus 382 ~~~l~v~GG~~~~~~~~~ 399 (433)
+++||++||....+.++.
T Consensus 303 ~~~iyv~GG~~~pg~rt~ 320 (323)
T TIGR03548 303 GNNIFSINGELKPGVRTP 320 (323)
T ss_pred CCEEEEEeccccCCcCCc
Confidence 999999999877654443
No 11
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=5.9e-35 Score=291.79 Aligned_cols=266 Identities=19% Similarity=0.273 Sum_probs=204.0
Q ss_pred hhcCcceeeeccccCccccEEEEeeccceEEEEecCCCcEEeCCCCCCccccccCCceEEEECCEEEEECCCCCCcccce
Q 013929 114 LIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISH 193 (433)
Q Consensus 114 ll~~~~~~~~gg~~~~~~~~l~~~~~~~~~~~yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 193 (433)
.+.++.+|++||....... ..+++++||+.+++|..++++.......+..+++++++++||||||.... ...+
T Consensus 172 ~~~~~~iyv~GG~~~~~~~------~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~n 244 (470)
T PLN02193 172 AQVGNKIYSFGGEFTPNQP------IDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYN 244 (470)
T ss_pred EEECCEEEEECCcCCCCCC------eeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC-CCCc
Confidence 4567899999997543211 23579999999999998876421111112245678899999999998543 4578
Q ss_pred eEEEEEcCCCceecCCCC---CCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCC---CCCCCccee
Q 013929 194 VIYRYSILTNSWSSGMRM---NAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPS---MKNPRKMCS 267 (433)
Q Consensus 194 ~~~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~---~p~~r~~~~ 267 (433)
++++||+.+++|++++++ |.+|..|++++++++|||+||.+.. ..++++++||+.+++|+.++. +|.+|..++
T Consensus 245 dv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~ 323 (470)
T PLN02193 245 GFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAG 323 (470)
T ss_pred cEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCCCCCCCCCCcE
Confidence 999999999999999887 8899999999999999999998764 357899999999999999874 667899999
Q ss_pred EEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCC---CCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecC
Q 013929 268 GVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNM---SPARGGAARGTEMPASAEAPPLVAVVNNELYAADYA 344 (433)
Q Consensus 268 ~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~ 344 (433)
+++++++||++||.++. .++++++||+.+++|+.++.+ |.+|..+ ++++++++||++||.
T Consensus 324 ~~~~~gkiyviGG~~g~---~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~--------------~~~~~~~~iyv~GG~ 386 (470)
T PLN02193 324 LEVVQGKVWVVYGFNGC---EVDDVHYYDPVQDKWTQVETFGVRPSERSVF--------------ASAAVGKHIVIFGGE 386 (470)
T ss_pred EEEECCcEEEEECCCCC---ccCceEEEECCCCEEEEeccCCCCCCCccee--------------EEEEECCEEEEECCc
Confidence 99999999999998642 468899999999999999754 7788876 788999999999984
Q ss_pred C--------------CeEEEEeCCCCcEEEeccCCC---cccCCCccc-EEEEEe--CCEEEEEcCCCCCCCCeeEEEEe
Q 013929 345 D--------------MEVRKYDKERRLWFTIGRLPE---RANSMNGWG-LAFRAC--GDRLIVIGGPKASGEGFIELNSW 404 (433)
Q Consensus 345 ~--------------~~i~~yd~~~~~W~~v~~lp~---~~~~~~~~~-~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~ 404 (433)
. +++++||+.+++|+.+..++. .+.. .++. ++.... ++.|+++||....+....++..+
T Consensus 387 ~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~-R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~ 465 (470)
T PLN02193 387 IAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSS-RGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFY 465 (470)
T ss_pred cCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCC-CccccceeeEEcCCceEEEEcCCCCccccccceEEE
Confidence 2 479999999999999986542 1111 1122 222223 34599999997655455444444
Q ss_pred e
Q 013929 405 V 405 (433)
Q Consensus 405 ~ 405 (433)
.
T Consensus 466 ~ 466 (470)
T PLN02193 466 G 466 (470)
T ss_pred e
Confidence 3
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=6.8e-35 Score=282.05 Aligned_cols=252 Identities=16% Similarity=0.218 Sum_probs=194.7
Q ss_pred CCCCCCccccccCCceEEEECCEEEEECCCCCCcccceeEEEEEc--CCCceecCCCCC-CCcceeeEEEeCCEEEEEcc
Q 013929 156 LPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSI--LTNSWSSGMRMN-APRCLFGSASLGEIAILAGG 232 (433)
Q Consensus 156 l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~--~t~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG 232 (433)
+|+||.++.. .++++++++|||+||.. .+.+++||+ .+++|+++++|| .+|..+++++++++|||+||
T Consensus 1 ~~~lp~~~~~----~~~~~~~~~vyv~GG~~-----~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG 71 (346)
T TIGR03547 1 LPDLPVGFKN----GTGAIIGDKVYVGLGSA-----GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGG 71 (346)
T ss_pred CCCCCccccC----ceEEEECCEEEEEcccc-----CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeC
Confidence 4678877643 34568899999999972 357899996 678999999999 58999999999999999999
Q ss_pred CCCCC-----CcCCceEEEeCCCCCeEEcC-CCCCCCcceeEE-EECCEEEEEccccCCCC-------------------
Q 013929 233 SDLEG-----NILSSAEMYNSETQTWKVLP-SMKNPRKMCSGV-FMDGKFYVIGGIGGSDS------------------- 286 (433)
Q Consensus 233 ~~~~~-----~~~~~~~~yd~~t~~W~~~~-~~p~~r~~~~~~-~~~g~lyv~GG~~~~~~------------------- 286 (433)
..... ..++++++||+.+++|+.++ ++|.+|..++++ +++++||++||.++...
T Consensus 72 ~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (346)
T TIGR03547 72 IGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDK 151 (346)
T ss_pred CCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhh
Confidence 86422 24788999999999999997 456667777666 79999999999863200
Q ss_pred -------------cccceEEEEECCCCceEecCCCCC-CCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCC------C
Q 013929 287 -------------KVLTCGEEYDLETETWTEIPNMSP-ARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD------M 346 (433)
Q Consensus 287 -------------~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~------~ 346 (433)
..++.+++||+.+++|+.+++||. +|..+ ++++++++||++||.. .
T Consensus 152 ~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~--------------~~~~~~~~iyv~GG~~~~~~~~~ 217 (346)
T TIGR03547 152 LIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGS--------------AIVHKGNKLLLINGEIKPGLRTA 217 (346)
T ss_pred hHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCc--------------eEEEECCEEEEEeeeeCCCccch
Confidence 013789999999999999999986 56665 7889999999999843 3
Q ss_pred eEEEEe--CCCCcEEEeccCCCcccC-CC-cccEEEEEeCCEEEEEcCCCCCCC----------------CeeEEEEeec
Q 013929 347 EVRKYD--KERRLWFTIGRLPERANS-MN-GWGLAFRACGDRLIVIGGPKASGE----------------GFIELNSWVP 406 (433)
Q Consensus 347 ~i~~yd--~~~~~W~~v~~lp~~~~~-~~-~~~~~~~~~~~~l~v~GG~~~~~~----------------~~~~~~~~~~ 406 (433)
.++.|| +++++|+.+++||.++.. +. ..+++++.++++|||+||...... ....+++|++
T Consensus 218 ~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~ 297 (346)
T TIGR03547 218 EVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYAL 297 (346)
T ss_pred heEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEe
Confidence 456665 567799999999877532 11 124556789999999999853210 1134667777
Q ss_pred CCCCCCceEecccCCCcEEEEEEEec
Q 013929 407 SEGPPQWNLLARKQSANFVYNCAVMG 432 (433)
Q Consensus 407 ~~~~~~W~~v~~~p~~~~~~~~~v~~ 432 (433)
++++|+.+++||.+|..+++++++
T Consensus 298 --~~~~W~~~~~lp~~~~~~~~~~~~ 321 (346)
T TIGR03547 298 --DNGKWSKVGKLPQGLAYGVSVSWN 321 (346)
T ss_pred --cCCcccccCCCCCCceeeEEEEcC
Confidence 478999999999999888876653
No 13
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=5.6e-34 Score=277.78 Aligned_cols=272 Identities=18% Similarity=0.260 Sum_probs=203.0
Q ss_pred hhcCcceeeeccccCccccEEEEeeccceEEEEecC--CCcEEeCCCCCC-ccccccCCceEEEECCEEEEECCCCC-C-
Q 013929 114 LIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPI--RRRWMHLPRMTS-NECFMCSDKESLAVGTELLVFGRELT-A- 188 (433)
Q Consensus 114 ll~~~~~~~~gg~~~~~~~~l~~~~~~~~~~~yd~~--~~~W~~l~~~p~-~~~~~~~~~~~~~~~~~iyv~GG~~~-~- 188 (433)
.+.++.+|++||... +.++.||+. +++|..++++|. +|. .+++++++++|||+||... .
T Consensus 35 ~~~~~~iyv~gG~~~------------~~~~~~d~~~~~~~W~~l~~~p~~~r~----~~~~v~~~~~IYV~GG~~~~~~ 98 (376)
T PRK14131 35 AIDNNTVYVGLGSAG------------TSWYKLDLNAPSKGWTKIAAFPGGPRE----QAVAAFIDGKLYVFGGIGKTNS 98 (376)
T ss_pred EEECCEEEEEeCCCC------------CeEEEEECCCCCCCeEECCcCCCCCcc----cceEEEECCEEEEEcCCCCCCC
Confidence 456889999988633 236678875 489999999884 553 3456888999999999853 1
Q ss_pred ---cccceeEEEEEcCCCceecCCC-CCCCcceeeEEE-eCCEEEEEccCCCCC--------------------------
Q 013929 189 ---HHISHVIYRYSILTNSWSSGMR-MNAPRCLFGSAS-LGEIAILAGGSDLEG-------------------------- 237 (433)
Q Consensus 189 ---~~~~~~~~~yd~~t~~W~~~~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~~-------------------------- 237 (433)
....+++++||+.+++|+.+++ .|.++.+|++++ .+++|||+||.+...
T Consensus 99 ~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~ 178 (376)
T PRK14131 99 EGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYF 178 (376)
T ss_pred CCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHh
Confidence 1245789999999999999985 467777787776 899999999975310
Q ss_pred -------CcCCceEEEeCCCCCeEEcCCCCC-CCcceeEEEECCEEEEEccccCCCCcccceEE--EEECCCCceEecCC
Q 013929 238 -------NILSSAEMYNSETQTWKVLPSMKN-PRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGE--EYDLETETWTEIPN 307 (433)
Q Consensus 238 -------~~~~~~~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~--~yd~~t~~W~~~~~ 307 (433)
...+++++||+.+++|+.++++|. +|..++++.++++||++||..... ....+++ .||+++++|+.+++
T Consensus 179 ~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~-~~~~~~~~~~~~~~~~~W~~~~~ 257 (376)
T PRK14131 179 DKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPG-LRTDAVKQGKFTGNNLKWQKLPD 257 (376)
T ss_pred cCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCC-cCChhheEEEecCCCcceeecCC
Confidence 024689999999999999999996 678888889999999999975322 2223333 46789999999999
Q ss_pred CCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCC----------------------CeEEEEeCCCCcEEEeccCC
Q 013929 308 MSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD----------------------MEVRKYDKERRLWFTIGRLP 365 (433)
Q Consensus 308 ~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~----------------------~~i~~yd~~~~~W~~v~~lp 365 (433)
||.+|.++.. .......+++++++||++||.. ..+++||+++++|+.++.||
T Consensus 258 ~p~~~~~~~~------~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp 331 (376)
T PRK14131 258 LPPAPGGSSQ------EGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELP 331 (376)
T ss_pred CCCCCcCCcC------CccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCC
Confidence 9887754200 0000012567899999999843 13678999999999999999
Q ss_pred CcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecCCCCCCceE
Q 013929 366 ERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNL 415 (433)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~W~~ 415 (433)
.++.. ++++.++++|||+||..........+..+.++ .+.+++
T Consensus 332 ~~r~~-----~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~--~~~~~~ 374 (376)
T PRK14131 332 QGLAY-----GVSVSWNNGVLLIGGETAGGKAVSDVTLLSWD--GKKLTV 374 (376)
T ss_pred CCccc-----eEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEc--CCEEEE
Confidence 98742 56788999999999987655566666666664 345543
No 14
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=9.4e-34 Score=283.88 Aligned_cols=210 Identities=19% Similarity=0.270 Sum_probs=182.1
Q ss_pred EEECCEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCC
Q 013929 173 LAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT 252 (433)
Q Consensus 173 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 252 (433)
+..++.||++||.... ...+.++.|||.+++|..+++|+.+|..+++++++++||++||.+.. ..++.||+.+++
T Consensus 268 ~~~~~~lyviGG~~~~-~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp~~n~ 342 (480)
T PHA02790 268 THVGEVVYLIGGWMNN-EIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFHGDAA 342 (480)
T ss_pred EEECCEEEEEcCCCCC-CcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC----CceEEEECCCCe
Confidence 4589999999997432 35567999999999999999999999999999999999999997532 568999999999
Q ss_pred eEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEE
Q 013929 253 WKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVA 332 (433)
Q Consensus 253 W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~ 332 (433)
|+.+++||.+|..+++++++|+||++||.++. .+.+++|||.+++|+.+++|+.+|..+ +++
T Consensus 343 W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~----~~~ve~ydp~~~~W~~~~~m~~~r~~~--------------~~~ 404 (480)
T PHA02790 343 WVNMPSLLKPRCNPAVASINNVIYVIGGHSET----DTTTEYLLPNHDQWQFGPSTYYPHYKS--------------CAL 404 (480)
T ss_pred EEECCCCCCCCcccEEEEECCEEEEecCcCCC----CccEEEEeCCCCEEEeCCCCCCccccc--------------eEE
Confidence 99999999999999999999999999998632 357899999999999999999999986 788
Q ss_pred EECCEEEEEecCCCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecCCCCCC
Q 013929 333 VVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQ 412 (433)
Q Consensus 333 ~~~~~ly~~gg~~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~ 412 (433)
+++|+||++|| .+++||+++++|+.+++||.++.. +++++++|+||++||.+.. .....+++|++ .+++
T Consensus 405 ~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~-----~~~~v~~~~IYviGG~~~~-~~~~~ve~Yd~--~~~~ 473 (480)
T PHA02790 405 VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDN-----PELIIVDNKLLLIGGFYRG-SYIDTIEVYNN--RTYS 473 (480)
T ss_pred EECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccc-----cEEEEECCEEEEECCcCCC-cccceEEEEEC--CCCe
Confidence 99999999997 478999999999999999988753 6788899999999998643 23355666666 6899
Q ss_pred ceEe
Q 013929 413 WNLL 416 (433)
Q Consensus 413 W~~v 416 (433)
|+..
T Consensus 474 W~~~ 477 (480)
T PHA02790 474 WNIW 477 (480)
T ss_pred EEec
Confidence 9865
No 15
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=5.1e-33 Score=271.07 Aligned_cols=256 Identities=16% Similarity=0.173 Sum_probs=196.0
Q ss_pred cEEeCCCCCCccccccCCceEEEECCEEEEECCCCCCcccceeEEEEEcC--CCceecCCCCC-CCcceeeEEEeCCEEE
Q 013929 152 RWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSIL--TNSWSSGMRMN-APRCLFGSASLGEIAI 228 (433)
Q Consensus 152 ~W~~l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~--t~~W~~~~~~p-~~r~~~~~~~~~~~iy 228 (433)
.+..+|+||.++... ++++++++|||+||.. .+.+++||+. +++|..++++| .+|..+++++++++||
T Consensus 18 ~~~~l~~lP~~~~~~----~~~~~~~~iyv~gG~~-----~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IY 88 (376)
T PRK14131 18 NAEQLPDLPVPFKNG----TGAIDNNTVYVGLGSA-----GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLY 88 (376)
T ss_pred ecccCCCCCcCccCC----eEEEECCEEEEEeCCC-----CCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEE
Confidence 467789999887543 4677899999999972 2458999986 47899999998 5899999999999999
Q ss_pred EEccCCC-C----CCcCCceEEEeCCCCCeEEcCC-CCCCCcceeEEE-ECCEEEEEccccCCC----------------
Q 013929 229 LAGGSDL-E----GNILSSAEMYNSETQTWKVLPS-MKNPRKMCSGVF-MDGKFYVIGGIGGSD---------------- 285 (433)
Q Consensus 229 v~GG~~~-~----~~~~~~~~~yd~~t~~W~~~~~-~p~~r~~~~~~~-~~g~lyv~GG~~~~~---------------- 285 (433)
|+||... . ...+.++++||+.+++|+.+++ .|.++..+++++ .+++||++||.+...
T Consensus 89 V~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~ 168 (376)
T PRK14131 89 VFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKT 168 (376)
T ss_pred EEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchh
Confidence 9999864 1 1346889999999999999985 466677777666 899999999975310
Q ss_pred ----------------CcccceEEEEECCCCceEecCCCCC-CCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCC---
Q 013929 286 ----------------SKVLTCGEEYDLETETWTEIPNMSP-ARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD--- 345 (433)
Q Consensus 286 ----------------~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~--- 345 (433)
....+++++||+.+++|+.++++|. +|.++ ++++++++||++||..
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~--------------a~v~~~~~iYv~GG~~~~~ 234 (376)
T PRK14131 169 PKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGS--------------AVVIKGNKLWLINGEIKPG 234 (376)
T ss_pred hhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcc--------------eEEEECCEEEEEeeeECCC
Confidence 0124689999999999999999986 56665 6788899999999842
Q ss_pred ---CeEE--EEeCCCCcEEEeccCCCcccCC---CcccEEEEEeCCEEEEEcCCCCCCC----------------CeeEE
Q 013929 346 ---MEVR--KYDKERRLWFTIGRLPERANSM---NGWGLAFRACGDRLIVIGGPKASGE----------------GFIEL 401 (433)
Q Consensus 346 ---~~i~--~yd~~~~~W~~v~~lp~~~~~~---~~~~~~~~~~~~~l~v~GG~~~~~~----------------~~~~~ 401 (433)
..++ .||+++++|+.+.+||.++... ...++.++.++++|||+||...... ....+
T Consensus 235 ~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (376)
T PRK14131 235 LRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSD 314 (376)
T ss_pred cCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeeh
Confidence 2344 4577899999999998876421 1122335678999999999864221 01234
Q ss_pred EEeecCCCCCCceEecccCCCcEEEEEEEec
Q 013929 402 NSWVPSEGPPQWNLLARKQSANFVYNCAVMG 432 (433)
Q Consensus 402 ~~~~~~~~~~~W~~v~~~p~~~~~~~~~v~~ 432 (433)
++|++ ++++|+.+++||.+|..+++++++
T Consensus 315 e~yd~--~~~~W~~~~~lp~~r~~~~av~~~ 343 (376)
T PRK14131 315 EIYAL--VNGKWQKVGELPQGLAYGVSVSWN 343 (376)
T ss_pred heEEe--cCCcccccCcCCCCccceEEEEeC
Confidence 55666 578999999999999988877654
No 16
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.7e-33 Score=287.79 Aligned_cols=231 Identities=19% Similarity=0.343 Sum_probs=198.6
Q ss_pred HHhhcCcceeeeccccCccccEEEEeeccceEEEEecCCCcEEeCCCCCCccccccCCceEEEECCEEEEECCCCCCccc
Q 013929 112 RSLIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHI 191 (433)
Q Consensus 112 ~~ll~~~~~~~~gg~~~~~~~~l~~~~~~~~~~~yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~ 191 (433)
..++.++.+|++||..+... ..++++.||+.+++|..++++|.+|.. +++++++++||++||... ...
T Consensus 289 ~~~~~~~~lyv~GG~~~~~~-------~~~~v~~yd~~~~~W~~~~~~~~~R~~----~~~~~~~~~lyv~GG~~~-~~~ 356 (534)
T PHA03098 289 GSVVLNNVIYFIGGMNKNNL-------SVNSVVSYDTKTKSWNKVPELIYPRKN----PGVTVFNNRIYVIGGIYN-SIS 356 (534)
T ss_pred eEEEECCEEEEECCCcCCCC-------eeccEEEEeCCCCeeeECCCCCccccc----ceEEEECCEEEEEeCCCC-CEe
Confidence 34567889999999875431 235789999999999999999988854 456888999999999853 345
Q ss_pred ceeEEEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEE
Q 013929 192 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM 271 (433)
Q Consensus 192 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 271 (433)
.+++++|||.+++|+.++++|.+|..|++++++++|||+||.......++++++||+.+++|+.++++|.+|..+++++.
T Consensus 357 ~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 436 (534)
T PHA03098 357 LNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH 436 (534)
T ss_pred cceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE
Confidence 67899999999999999999999999999999999999999765555678999999999999999999999999999999
Q ss_pred CCEEEEEccccCCCC-cccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCC-----
Q 013929 272 DGKFYVIGGIGGSDS-KVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD----- 345 (433)
Q Consensus 272 ~g~lyv~GG~~~~~~-~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~----- 345 (433)
+++||++||.+.... ...+.+++||+.+++|+.+++++.+|..+ ++++++++||++||..
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~--------------~~~~~~~~iyv~GG~~~~~~~ 502 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA--------------SLCIFNNKIYVVGGDKYEYYI 502 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccc--------------eEEEECCEEEEEcCCcCCccc
Confidence 999999999863321 23567999999999999999999888876 6788899999999853
Q ss_pred CeEEEEeCCCCcEEEeccCCCcc
Q 013929 346 MEVRKYDKERRLWFTIGRLPERA 368 (433)
Q Consensus 346 ~~i~~yd~~~~~W~~v~~lp~~~ 368 (433)
+.+++||+.+++|+.++.+|...
T Consensus 503 ~~v~~yd~~~~~W~~~~~~p~~~ 525 (534)
T PHA03098 503 NEIEVYDDKTNTWTLFCKFPKVI 525 (534)
T ss_pred ceeEEEeCCCCEEEecCCCcccc
Confidence 68999999999999998877755
No 17
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=244.40 Aligned_cols=258 Identities=16% Similarity=0.292 Sum_probs=208.5
Q ss_pred hhcCcceeeeccccCccccEEEEeeccceEEEEecCCCcEEeCCCC--------CCc-cccccCCceEEEECCEEEEECC
Q 013929 114 LIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRM--------TSN-ECFMCSDKESLAVGTELLVFGR 184 (433)
Q Consensus 114 ll~~~~~~~~gg~~~~~~~~l~~~~~~~~~~~yd~~~~~W~~l~~~--------p~~-~~~~~~~~~~~~~~~~iyv~GG 184 (433)
+..+..+|.+||+.... -|-.....+++++|..+-+|.++|+- |.+ ..+...+++++.+.+++|++||
T Consensus 20 vaVG~riYSFGGYCsGe---dy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGG 96 (392)
T KOG4693|consen 20 VAVGSRIYSFGGYCSGE---DYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGG 96 (392)
T ss_pred eeecceEEecCCccccc---ccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcC
Confidence 44678899999875432 12222456899999999999999861 111 1223347788999999999999
Q ss_pred CCCCcccceeEEEEEcCCCceecC---CCCCCCcceeeEEEeCCEEEEEccCCCCC-CcCCceEEEeCCCCCeEEcC---
Q 013929 185 ELTAHHISHVIYRYSILTNSWSSG---MRMNAPRCLFGSASLGEIAILAGGSDLEG-NILSSAEMYNSETQTWKVLP--- 257 (433)
Q Consensus 185 ~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~yd~~t~~W~~~~--- 257 (433)
.++.....|.++.|||++++|++. .-+|.+|.+|+++++++.+|+|||+.... .+.++++++|..|.+|+.+.
T Consensus 97 RND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg 176 (392)
T KOG4693|consen 97 RNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKG 176 (392)
T ss_pred ccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccC
Confidence 988888899999999999999865 34799999999999999999999987543 46789999999999999985
Q ss_pred CCCCCCcceeEEEECCEEEEEccccCCC-------CcccceEEEEECCCCceEecCC---CCCCCCCCCCCCcCCCCcCC
Q 013929 258 SMKNPRKMCSGVFMDGKFYVIGGIGGSD-------SKVLTCGEEYDLETETWTEIPN---MSPARGGAARGTEMPASAEA 327 (433)
Q Consensus 258 ~~p~~r~~~~~~~~~g~lyv~GG~~~~~-------~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~~~~~ 327 (433)
..|.-|..|+++++++.+|||||+.... ..+-+.+..+|+.|+.|.+.++ .|.+|.+|
T Consensus 177 ~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSH------------ 244 (392)
T KOG4693|consen 177 DPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSH------------ 244 (392)
T ss_pred CCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccccc------------
Confidence 3455578899999999999999986432 2456778899999999998863 57788887
Q ss_pred CCEEEEECCEEEEEecCC-------CeEEEEeCCCCcEEEec---cCCCcccCCCcccEEEEEeCCEEEEEcCCCC
Q 013929 328 PPLVAVVNNELYAADYAD-------MEVRKYDKERRLWFTIG---RLPERANSMNGWGLAFRACGDRLIVIGGPKA 393 (433)
Q Consensus 328 ~~~~~~~~~~ly~~gg~~-------~~i~~yd~~~~~W~~v~---~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~ 393 (433)
+..++|++||+|||.. +++++|||.+..|..+. .-|.+|.. .++++.++++|+|||...
T Consensus 245 --S~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRR-----qC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 245 --STFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRR-----QCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred --ceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccc-----eeEEEECCEEEEecCCCC
Confidence 8999999999999854 79999999999999986 34544432 667789999999999754
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=8.4e-33 Score=264.70 Aligned_cols=244 Identities=18% Similarity=0.209 Sum_probs=190.6
Q ss_pred ceEEEECCEEEEECCCCCCc---------ccceeEEEEE-cCCC-ceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCC
Q 013929 170 KESLAVGTELLVFGRELTAH---------HISHVIYRYS-ILTN-SWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGN 238 (433)
Q Consensus 170 ~~~~~~~~~iyv~GG~~~~~---------~~~~~~~~yd-~~t~-~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 238 (433)
..++++++.|||+||.+... ...+++++|+ +..+ +|..+++||.+|..+++++++++||++||.++. .
T Consensus 7 ~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~-~ 85 (323)
T TIGR03548 7 CYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSS-E 85 (323)
T ss_pred EeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCC-C
Confidence 44577899999999986432 2456788886 3323 799999999999988899999999999998764 3
Q ss_pred cCCceEEEeCCCCCe----EEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCC-CCC
Q 013929 239 ILSSAEMYNSETQTW----KVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSP-ARG 313 (433)
Q Consensus 239 ~~~~~~~yd~~t~~W----~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~ 313 (433)
.+++++.||+.+++| +.++++|.+|..+++++++++||++||... ....+++++||+.+++|+.++++|. +|.
T Consensus 86 ~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~~p~~~r~ 163 (323)
T TIGR03548 86 RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRN--GKPSNKSYLFNLETQEWFELPDFPGEPRV 163 (323)
T ss_pred CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCC--CccCceEEEEcCCCCCeeECCCCCCCCCC
Confidence 578999999999998 788999999999999999999999999752 3357889999999999999998874 676
Q ss_pred CCCCCCcCCCCcCCCCEEEEECCEEEEEecCC----CeEEEEeCCCCcEEEeccCCCcccCCCcc-cEEEEEeCCEEEEE
Q 013929 314 GAARGTEMPASAEAPPLVAVVNNELYAADYAD----MEVRKYDKERRLWFTIGRLPERANSMNGW-GLAFRACGDRLIVI 388 (433)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~----~~i~~yd~~~~~W~~v~~lp~~~~~~~~~-~~~~~~~~~~l~v~ 388 (433)
.+ .+++++++||++||.. .++++||+++++|+.+++|+..+...... .++++..+++|||+
T Consensus 164 ~~--------------~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~ 229 (323)
T TIGR03548 164 QP--------------VCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCI 229 (323)
T ss_pred cc--------------eEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEE
Confidence 65 6788999999999864 46899999999999998775321111111 24445568999999
Q ss_pred cCCCCCCC-------------------------------CeeEEEEeecCCCCCCceEecccC-CCcEEEEEEEec
Q 013929 389 GGPKASGE-------------------------------GFIELNSWVPSEGPPQWNLLARKQ-SANFVYNCAVMG 432 (433)
Q Consensus 389 GG~~~~~~-------------------------------~~~~~~~~~~~~~~~~W~~v~~~p-~~~~~~~~~v~~ 432 (433)
||.+.... -... ++.||+.+++|+.++++| ..|..+++++++
T Consensus 230 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~ 303 (323)
T TIGR03548 230 GGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRK--ILIYNVRTGKWKSIGNSPFFARCGAALLLTG 303 (323)
T ss_pred CCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCce--EEEEECCCCeeeEcccccccccCchheEEEC
Confidence 99863210 0123 445555789999999998 578888777765
No 19
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=3.6e-33 Score=279.63 Aligned_cols=203 Identities=18% Similarity=0.285 Sum_probs=179.2
Q ss_pred cCcceeeeccccCccccEEEEeeccceEEEEecCCCcEEeCCCCCCccccccCCceEEEECCEEEEECCCCCCcccceeE
Q 013929 116 RSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVI 195 (433)
Q Consensus 116 ~~~~~~~~gg~~~~~~~~l~~~~~~~~~~~yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 195 (433)
.++.+|++||..+.. ..+.++.|||.+++|..+++|+.+|.. +++++++++||++||... .+.+
T Consensus 270 ~~~~lyviGG~~~~~--------~~~~v~~Ydp~~~~W~~~~~m~~~r~~----~~~v~~~~~iYviGG~~~----~~sv 333 (480)
T PHA02790 270 VGEVVYLIGGWMNNE--------IHNNAIAVNYISNNWIPIPPMNSPRLY----ASGVPANNKLYVVGGLPN----PTSV 333 (480)
T ss_pred ECCEEEEEcCCCCCC--------cCCeEEEEECCCCEEEECCCCCchhhc----ceEEEECCEEEEECCcCC----CCce
Confidence 567889999876532 346788999999999999999998854 346788999999999742 2568
Q ss_pred EEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEECCEE
Q 013929 196 YRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKF 275 (433)
Q Consensus 196 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~l 275 (433)
++|||.+++|..+++||.+|..+++++++++|||+||.++. ...+++|||.+++|+.+++|+.+|..+++++++|+|
T Consensus 334 e~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~I 410 (480)
T PHA02790 334 ERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRL 410 (480)
T ss_pred EEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEE
Confidence 99999999999999999999999999999999999998643 367999999999999999999999999999999999
Q ss_pred EEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCC-----CeEEE
Q 013929 276 YVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD-----MEVRK 350 (433)
Q Consensus 276 yv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~-----~~i~~ 350 (433)
|++||. +++||+++++|+.+++|+.+|..+ ++++++|+||++||.. ..+++
T Consensus 411 Yv~GG~----------~e~ydp~~~~W~~~~~m~~~r~~~--------------~~~v~~~~IYviGG~~~~~~~~~ve~ 466 (480)
T PHA02790 411 FLVGRN----------AEFYCESSNTWTLIDDPIYPRDNP--------------ELIIVDNKLLLIGGFYRGSYIDTIEV 466 (480)
T ss_pred EEECCc----------eEEecCCCCcEeEcCCCCCCcccc--------------EEEEECCEEEEECCcCCCcccceEEE
Confidence 999984 478999999999999999999886 8999999999999853 57999
Q ss_pred EeCCCCcEEEe
Q 013929 351 YDKERRLWFTI 361 (433)
Q Consensus 351 yd~~~~~W~~v 361 (433)
||+++++|+..
T Consensus 467 Yd~~~~~W~~~ 477 (480)
T PHA02790 467 YNNRTYSWNIW 477 (480)
T ss_pred EECCCCeEEec
Confidence 99999999864
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=2.1e-31 Score=230.80 Aligned_cols=244 Identities=16% Similarity=0.195 Sum_probs=201.5
Q ss_pred CceEEEECCEEEEECCCCCC----cccceeEEEEEcCCCceecCCC-------------CCCCcceeeEEEeCCEEEEEc
Q 013929 169 DKESLAVGTELLVFGRELTA----HHISHVIYRYSILTNSWSSGMR-------------MNAPRCLFGSASLGEIAILAG 231 (433)
Q Consensus 169 ~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~yd~~t~~W~~~~~-------------~p~~r~~~~~~~~~~~iyv~G 231 (433)
.++++++|.+||-|||+-.+ ....-++.++|..+-+|+++++ .|..|++|+++.+++++||-|
T Consensus 16 NHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWG 95 (392)
T KOG4693|consen 16 NHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWG 95 (392)
T ss_pred cceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEc
Confidence 55678999999999998432 2234479999999999998876 255699999999999999999
Q ss_pred cCCCCCCcCCceEEEeCCCCCeEEc---CCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCC-
Q 013929 232 GSDLEGNILSSAEMYNSETQTWKVL---PSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPN- 307 (433)
Q Consensus 232 G~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~- 307 (433)
|.+++....+.++.||++++.|++. .-+|..|.+|++++.++.+|||||+..+.....++++++|..|.+|+.+..
T Consensus 96 GRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tk 175 (392)
T KOG4693|consen 96 GRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTK 175 (392)
T ss_pred CccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhcc
Confidence 9988767788899999999999875 367889999999999999999999986667788899999999999999853
Q ss_pred --CCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCC--------------CeEEEEeCCCCcEEEec---cCCCcc
Q 013929 308 --MSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD--------------MEVRKYDKERRLWFTIG---RLPERA 368 (433)
Q Consensus 308 --~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~--------------~~i~~yd~~~~~W~~v~---~lp~~~ 368 (433)
.|.=|..| +++++++.+|||||.. +.|..+|..|+.|..-+ .+|..|
T Consensus 176 g~PprwRDFH--------------~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GR 241 (392)
T KOG4693|consen 176 GDPPRWRDFH--------------TASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGR 241 (392)
T ss_pred CCCchhhhhh--------------hhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcc
Confidence 34445555 6788999999999832 57889999999999875 345555
Q ss_pred cCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecCCCCCCceEecc---cCCCcEEEEEEEec
Q 013929 369 NSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLAR---KQSANFVYNCAVMG 432 (433)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~W~~v~~---~p~~~~~~~~~v~~ 432 (433)
.+ ++...++++||+|||++..- .....+.|.+|+.+..|+.+.. -|.+|-+++|+|+|
T Consensus 242 RS-----HS~fvYng~~Y~FGGYng~l-n~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g 302 (392)
T KOG4693|consen 242 RS-----HSTFVYNGKMYMFGGYNGTL-NVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSG 302 (392)
T ss_pred cc-----cceEEEcceEEEecccchhh-hhhhcceeecccccchheeeeccCCCCCcccceeEEEEC
Confidence 54 67788999999999996543 2244566788889999999965 58899999999987
No 21
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.95 E-value=1.3e-27 Score=218.90 Aligned_cols=220 Identities=18% Similarity=0.229 Sum_probs=173.2
Q ss_pred ceeeeccccCc-cccEEEEeeccceEEEEecCCCcEEeC--CCCCCccccccCCceEEEE-CCEEEEECCCCCCcc----
Q 013929 119 ELYRLRRLNGV-IEHWVYFSCHLLEWEAFDPIRRRWMHL--PRMTSNECFMCSDKESLAV-GTELLVFGRELTAHH---- 190 (433)
Q Consensus 119 ~~~~~gg~~~~-~~~~l~~~~~~~~~~~yd~~~~~W~~l--~~~p~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~---- 190 (433)
+++.+||+.-. +..+ ..++++.||..+++|..+ |+.|.||+.| .+|++ .|.+|+|||...+..
T Consensus 80 ELilfGGEf~ngqkT~-----vYndLy~Yn~k~~eWkk~~spn~P~pRssh----q~va~~s~~l~~fGGEfaSPnq~qF 150 (521)
T KOG1230|consen 80 ELILFGGEFYNGQKTH-----VYNDLYSYNTKKNEWKKVVSPNAPPPRSSH----QAVAVPSNILWLFGGEFASPNQEQF 150 (521)
T ss_pred eeEEecceeecceeEE-----EeeeeeEEeccccceeEeccCCCcCCCccc----eeEEeccCeEEEeccccCCcchhhh
Confidence 56666664322 2222 357899999999999887 5667777533 34544 589999999875432
Q ss_pred -cceeEEEEEcCCCceecCC--CCCCCcceeeEEEeCCEEEEEccCCCCC---CcCCceEEEeCCCCCeEEcCC---CCC
Q 013929 191 -ISHVIYRYSILTNSWSSGM--RMNAPRCLFGSASLGEIAILAGGSDLEG---NILSSAEMYNSETQTWKVLPS---MKN 261 (433)
Q Consensus 191 -~~~~~~~yd~~t~~W~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~yd~~t~~W~~~~~---~p~ 261 (433)
++.++|+||..+++|.++. .-|.+|++|.+++...+|++|||+.+.. .|++++|+||+.+-+|.++.+ -|.
T Consensus 151 ~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~Pt 230 (521)
T KOG1230|consen 151 HHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPT 230 (521)
T ss_pred hhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCC
Confidence 6789999999999999874 5799999999999999999999985442 479999999999999999854 478
Q ss_pred CCcceeEEEE-CCEEEEEccccCC-------CCcccceEEEEECCC-----CceEecCC---CCCCCCCCCCCCcCCCCc
Q 013929 262 PRKMCSGVFM-DGKFYVIGGIGGS-------DSKVLTCGEEYDLET-----ETWTEIPN---MSPARGGAARGTEMPASA 325 (433)
Q Consensus 262 ~r~~~~~~~~-~g~lyv~GG~~~~-------~~~~~~~v~~yd~~t-----~~W~~~~~---~p~~r~~~~~~~~~~~~~ 325 (433)
+|++|...+. +|.|||.|||... .+...++++..++.+ -.|+.+.+ .|.+|++.
T Consensus 231 pRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgf---------- 300 (521)
T KOG1230|consen 231 PRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGF---------- 300 (521)
T ss_pred CCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCce----------
Confidence 9999998887 9999999998622 235677899999988 56888864 57889885
Q ss_pred CCCCEEEEE-CCEEEEEecC--------------CCeEEEEeCCCCcEEEe
Q 013929 326 EAPPLVAVV-NNELYAADYA--------------DMEVRKYDKERRLWFTI 361 (433)
Q Consensus 326 ~~~~~~~~~-~~~ly~~gg~--------------~~~i~~yd~~~~~W~~v 361 (433)
++++. +++-++|||. .++++.||...++|...
T Consensus 301 ----sv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 301 ----SVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred ----eEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 55554 6699999982 37899999999999765
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.95 E-value=5.9e-26 Score=226.49 Aligned_cols=249 Identities=23% Similarity=0.353 Sum_probs=201.1
Q ss_pred CCCCCccccccCCceEEEECCEEEEECCCCCCcccce-eEEEEEcCCCceecCC---CCCCCcceeeEEEeCCEEEEEcc
Q 013929 157 PRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISH-VIYRYSILTNSWSSGM---RMNAPRCLFGSASLGEIAILAGG 232 (433)
Q Consensus 157 ~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~-~~~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG 232 (433)
...|.+|.. ++++.+++++|||||........+ ++|++|..+..|.... ..|.+|.+|.++.++++||+|||
T Consensus 55 ~~~p~~R~~----hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG 130 (482)
T KOG0379|consen 55 GVGPIPRAG----HSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGG 130 (482)
T ss_pred CCCcchhhc----cceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEcc
Confidence 335666654 445777999999999875544443 6999999999998653 46889999999999999999999
Q ss_pred CCCCCCcCCceEEEeCCCCCeEEcC---CCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecC---
Q 013929 233 SDLEGNILSSAEMYNSETQTWKVLP---SMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIP--- 306 (433)
Q Consensus 233 ~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~--- 306 (433)
.+.....+++++.||+.|++|+.+. .+|.+|.+|++++.+.+|||+||.+.. ....+++++||+++.+|.++.
T Consensus 131 ~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~-~~~~ndl~i~d~~~~~W~~~~~~g 209 (482)
T KOG0379|consen 131 TDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGT-GDSLNDLHIYDLETSTWSELDTQG 209 (482)
T ss_pred ccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCc-ccceeeeeeeccccccceecccCC
Confidence 9865566889999999999998864 568899999999999999999999843 338899999999999999985
Q ss_pred CCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCC------CeEEEEeCCCCcEEEec---cCCCcccCCCcccEE
Q 013929 307 NMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD------MEVRKYDKERRLWFTIG---RLPERANSMNGWGLA 377 (433)
Q Consensus 307 ~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~------~~i~~yd~~~~~W~~v~---~lp~~~~~~~~~~~~ 377 (433)
..|.+|.+| ++++++++++++||.. ++++.+|..+.+|+.+. .+|.+|. +++
T Consensus 210 ~~P~pR~gH--------------~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~-----~h~ 270 (482)
T KOG0379|consen 210 EAPSPRYGH--------------AMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRS-----GHS 270 (482)
T ss_pred CCCCCCCCc--------------eEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcc-----eee
Confidence 467889998 8999999999998633 79999999999999775 4566664 366
Q ss_pred EEEeCCEEEEEcCCCCCCCCeeEEEEeecCCCCCCceEeccc----CCCcEEEEEEE
Q 013929 378 FRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARK----QSANFVYNCAV 430 (433)
Q Consensus 378 ~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~W~~v~~~----p~~~~~~~~~v 430 (433)
++..+.+++++||..... .......|.++..+..|..+... |.+++.|..+.
T Consensus 271 ~~~~~~~~~l~gG~~~~~-~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 326 (482)
T KOG0379|consen 271 LTVSGDHLLLFGGGTDPK-QEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAEL 326 (482)
T ss_pred eEEECCEEEEEcCCcccc-cccccccccccccccceeeeecccccccccccccccee
Confidence 778999999999986641 11345567777789999988654 45666666554
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.94 E-value=8e-25 Score=218.38 Aligned_cols=225 Identities=21% Similarity=0.293 Sum_probs=189.2
Q ss_pred cCcceeeeccccCccccEEEEeeccceEEEEecCCCcEEeCCC---CCCccccccCCceEEEECCEEEEECCCCCCcccc
Q 013929 116 RSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPR---MTSNECFMCSDKESLAVGTELLVFGRELTAHHIS 192 (433)
Q Consensus 116 ~~~~~~~~gg~~~~~~~~l~~~~~~~~~~~yd~~~~~W~~l~~---~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~ 192 (433)
.++++|++||....... ...++++||..+..|..... .|.++ ..+.+++++++||+|||........
T Consensus 69 ~~~~~~vfGG~~~~~~~------~~~dl~~~d~~~~~w~~~~~~g~~p~~r----~g~~~~~~~~~l~lfGG~~~~~~~~ 138 (482)
T KOG0379|consen 69 IGNKLYVFGGYGSGDRL------TDLDLYVLDLESQLWTKPAATGDEPSPR----YGHSLSAVGDKLYLFGGTDKKYRNL 138 (482)
T ss_pred ECCEEEEECCCCCCCcc------ccceeEEeecCCcccccccccCCCCCcc----cceeEEEECCeEEEEccccCCCCCh
Confidence 48999999987655410 11269999999999977643 34444 3566788999999999997655668
Q ss_pred eeEEEEEcCCCceecCC---CCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcC---CCCCCCcce
Q 013929 193 HVIYRYSILTNSWSSGM---RMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLP---SMKNPRKMC 266 (433)
Q Consensus 193 ~~~~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~r~~~ 266 (433)
++++.||+.|++|..+. ..|.+|.+|++++++.+||||||.+.....++++++||+++.+|.++. ..|.||.+|
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH 218 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGH 218 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCc
Confidence 89999999999998664 468999999999999999999999887668999999999999999874 668899999
Q ss_pred eEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecC---CCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEec
Q 013929 267 SGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIP---NMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADY 343 (433)
Q Consensus 267 ~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg 343 (433)
++++.+++++++||.+ .....+++++.+|+.+.+|..+. ..|.+|.+| ..++.+..++++||
T Consensus 219 ~~~~~~~~~~v~gG~~-~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h--------------~~~~~~~~~~l~gG 283 (482)
T KOG0379|consen 219 AMVVVGNKLLVFGGGD-DGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGH--------------SLTVSGDHLLLFGG 283 (482)
T ss_pred eEEEECCeEEEEeccc-cCCceecceEeeecccceeeeccccCCCCCCccee--------------eeEEECCEEEEEcC
Confidence 9999999999999988 45679999999999999999765 478899997 67799999999997
Q ss_pred CC-------CeEEEEeCCCCcEEEeccCC
Q 013929 344 AD-------MEVRKYDKERRLWFTIGRLP 365 (433)
Q Consensus 344 ~~-------~~i~~yd~~~~~W~~v~~lp 365 (433)
.. .+++.||.+++.|.++....
T Consensus 284 ~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 284 GTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred Ccccccccccccccccccccceeeeeccc
Confidence 43 46889999999999997655
No 24
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=2.3e-25 Score=208.79 Aligned_cols=263 Identities=19% Similarity=0.267 Sum_probs=203.8
Q ss_pred HHhhcCcceeeeccccCccccEEEEeeccceEEEEecCCCcEEeC---CCCCCccccccCCceEEEECCEEEEECCCCCC
Q 013929 112 RSLIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHL---PRMTSNECFMCSDKESLAVGTELLVFGRELTA 188 (433)
Q Consensus 112 ~~ll~~~~~~~~gg~~~~~~~~l~~~~~~~~~~~yd~~~~~W~~l---~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~ 188 (433)
|++....-+.+|||-+... ..++++||..++.|+.- ..+|.+ |..++.++.|.+||+|||....
T Consensus 37 RAVaikELiviFGGGNEGi---------iDELHvYNTatnqWf~PavrGDiPpg----cAA~GfvcdGtrilvFGGMvEY 103 (830)
T KOG4152|consen 37 RAVAIKELIVIFGGGNEGI---------IDELHVYNTATNQWFAPAVRGDIPPG----CAAFGFVCDGTRILVFGGMVEY 103 (830)
T ss_pred hheeeeeeEEEecCCcccc---------hhhhhhhccccceeecchhcCCCCCc----hhhcceEecCceEEEEccEeee
Confidence 4556667777887755432 46789999999999753 234443 3445667889999999999877
Q ss_pred cccceeEEEEEcCCCceecCCC-------CCCCcceeeEEEeCCEEEEEccCCCC--------CCcCCceEEEeCCCCC-
Q 013929 189 HHISHVIYRYSILTNSWSSGMR-------MNAPRCLFGSASLGEIAILAGGSDLE--------GNILSSAEMYNSETQT- 252 (433)
Q Consensus 189 ~~~~~~~~~yd~~t~~W~~~~~-------~p~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~~yd~~t~~- 252 (433)
.+++|++|..-...-+|+++.+ +|.||.+|+...++++-|+|||..++ ..|++++|++++..+.
T Consensus 104 GkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsg 183 (830)
T KOG4152|consen 104 GKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSG 183 (830)
T ss_pred ccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCc
Confidence 8889988877777777887743 57899999999999999999996432 2479999999998664
Q ss_pred ---eEEc---CCCCCCCcceeEEEE------CCEEEEEccccCCCCcccceEEEEECCCCceEecC---CCCCCCCCCCC
Q 013929 253 ---WKVL---PSMKNPRKMCSGVFM------DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIP---NMSPARGGAAR 317 (433)
Q Consensus 253 ---W~~~---~~~p~~r~~~~~~~~------~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~ 317 (433)
|... ..+|.+|..|+++++ ..++||+||.+| ..+.++|..|++|-+|.+.. ..|.+|+-|
T Consensus 184 vv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G---~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLH-- 258 (830)
T KOG4152|consen 184 VVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG---CRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLH-- 258 (830)
T ss_pred eEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc---ccccceeEEecceeecccccccCCCCCCcccc--
Confidence 8764 468999999999987 358999999984 47899999999999999875 357788887
Q ss_pred CCcCCCCcCCCCEEEEECCEEEEEecC-------------------CCeEEEEeCCCCcEEEec-------cCCCcccCC
Q 013929 318 GTEMPASAEAPPLVAVVNNELYAADYA-------------------DMEVRKYDKERRLWFTIG-------RLPERANSM 371 (433)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~ly~~gg~-------------------~~~i~~yd~~~~~W~~v~-------~lp~~~~~~ 371 (433)
+++.+++++|+|||. ++++-++++.+..|..+- ..|.+|
T Consensus 259 ------------sa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~R--- 323 (830)
T KOG4152|consen 259 ------------SATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRAR--- 323 (830)
T ss_pred ------------cceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecccccccccccc---
Confidence 789999999999982 367888999999998873 245555
Q ss_pred CcccEEEEEeCCEEEEEcCCCCCC----CCeeEEEEeecCCC
Q 013929 372 NGWGLAFRACGDRLIVIGGPKASG----EGFIELNSWVPSEG 409 (433)
Q Consensus 372 ~~~~~~~~~~~~~l~v~GG~~~~~----~~~~~~~~~~~~~~ 409 (433)
.||++++++.+||+-.|.++.. +...+.+.|.+|.+
T Consensus 324 --AGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTe 363 (830)
T KOG4152|consen 324 --AGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTE 363 (830)
T ss_pred --ccceeEEeccEEEEEeccchhhHhhccccchhhhhhhccc
Confidence 3588889999999999987643 23344455766543
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.93 E-value=2e-24 Score=198.05 Aligned_cols=226 Identities=19% Similarity=0.296 Sum_probs=176.6
Q ss_pred CCEEEEECCCCCCc---ccceeEEEEEcCCCceecC--CCCCCCcceeeEEEeC-CEEEEEccCCCCC---C--cCCceE
Q 013929 176 GTELLVFGRELTAH---HISHVIYRYSILTNSWSSG--MRMNAPRCLFGSASLG-EIAILAGGSDLEG---N--ILSSAE 244 (433)
Q Consensus 176 ~~~iyv~GG~~~~~---~~~~~~~~yd~~t~~W~~~--~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~---~--~~~~~~ 244 (433)
.+.|++|||...+. ..+|++|.||..+++|+++ |..|.||+.|.++++- +.+|+|||.-... + ...++|
T Consensus 78 keELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W 157 (521)
T KOG1230|consen 78 KEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLW 157 (521)
T ss_pred cceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhee
Confidence 45899999986433 3688999999999999976 5678999999988885 8999999953221 1 367999
Q ss_pred EEeCCCCCeEEcC--CCCCCCcceeEEEECCEEEEEccccCCC--CcccceEEEEECCCCceEecCC---CCCCCCCCCC
Q 013929 245 MYNSETQTWKVLP--SMKNPRKMCSGVFMDGKFYVIGGIGGSD--SKVLTCGEEYDLETETWTEIPN---MSPARGGAAR 317 (433)
Q Consensus 245 ~yd~~t~~W~~~~--~~p~~r~~~~~~~~~g~lyv~GG~~~~~--~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~ 317 (433)
.||+.+++|+++. .-|.+|++|-+++...+|++|||+...+ ..+.|++++||+.+-+|+++.+ -|.+|+++
T Consensus 158 ~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGc-- 235 (521)
T KOG1230|consen 158 LFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGC-- 235 (521)
T ss_pred eeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcc--
Confidence 9999999999975 5688999999999999999999986444 4578999999999999999864 47889986
Q ss_pred CCcCCCCcCCCCEEEEE-CCEEEEEecCC--------------CeEEEEeCCC-----CcEEEeccCCCcccCCCcccEE
Q 013929 318 GTEMPASAEAPPLVAVV-NNELYAADYAD--------------MEVRKYDKER-----RLWFTIGRLPERANSMNGWGLA 377 (433)
Q Consensus 318 ~~~~~~~~~~~~~~~~~-~~~ly~~gg~~--------------~~i~~yd~~~-----~~W~~v~~lp~~~~~~~~~~~~ 377 (433)
.+.+. +|.||++||.. +++|.+++.+ -.|..+.+....+..+.+++++
T Consensus 236 ------------q~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~ 303 (521)
T KOG1230|consen 236 ------------QFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVA 303 (521)
T ss_pred ------------eEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEE
Confidence 55555 99999999842 6899999988 5799998665555545554443
Q ss_pred EEEeCCEEEEEcCCCCCCC------CeeEEEEeecCCCCCCceEe
Q 013929 378 FRACGDRLIVIGGPKASGE------GFIELNSWVPSEGPPQWNLL 416 (433)
Q Consensus 378 ~~~~~~~l~v~GG~~~~~~------~~~~~~~~~~~~~~~~W~~v 416 (433)
+ .-+++-+.|||..+... +.-..+.|.++...++|...
T Consensus 304 v-a~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 304 V-AKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred E-ecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 3 45679999999876321 12223457777788999866
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=1e-23 Score=197.70 Aligned_cols=256 Identities=17% Similarity=0.220 Sum_probs=195.1
Q ss_pred CcEEeCC----CCCCccccccCCceEEEECCEEEEECCCCCCcccceeEEEEEcCCCceecC---CCCCCCcceeeEEEe
Q 013929 151 RRWMHLP----RMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSG---MRMNAPRCLFGSASL 223 (433)
Q Consensus 151 ~~W~~l~----~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~r~~~~~~~~ 223 (433)
-+|..+. +.|.+|+.| .++++...|.+|||.+.+ ..+.+.+||..+|+|..- .+.|.+-..|+.+..
T Consensus 17 ~rWrrV~~~tGPvPrpRHGH----RAVaikELiviFGGGNEG--iiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfvcd 90 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGH----RAVAIKELIVIFGGGNEG--IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCD 90 (830)
T ss_pred cceEEEecccCCCCCccccc----hheeeeeeEEEecCCccc--chhhhhhhccccceeecchhcCCCCCchhhcceEec
Confidence 4687663 456666544 458899999999997433 566799999999999743 567888888999999
Q ss_pred CCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcC-------CCCCCCcceeEEEECCEEEEEccccCCC-------Cccc
Q 013929 224 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLP-------SMKNPRKMCSGVFMDGKFYVIGGIGGSD-------SKVL 289 (433)
Q Consensus 224 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-------~~p~~r~~~~~~~~~g~lyv~GG~~~~~-------~~~~ 289 (433)
+.+||||||..+.+.|.+++|.+....-.|+.+. ++|.||-+|+..+++++-|+|||...+. .+++
T Consensus 91 GtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYL 170 (830)
T KOG4152|consen 91 GTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYL 170 (830)
T ss_pred CceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhh
Confidence 9999999999888888888877777777788764 4577899999999999999999975321 3689
Q ss_pred ceEEEEECCCC----ceEec---CCCCCCCCCCCCCCcCCCCcCCCCEEEEE------CCEEEEEecCC----CeEEEEe
Q 013929 290 TCGEEYDLETE----TWTEI---PNMSPARGGAARGTEMPASAEAPPLVAVV------NNELYAADYAD----MEVRKYD 352 (433)
Q Consensus 290 ~~v~~yd~~t~----~W~~~---~~~p~~r~~~~~~~~~~~~~~~~~~~~~~------~~~ly~~gg~~----~~i~~yd 352 (433)
+++++.++.-+ .|... ..+|.+|..| .++++ ..++|++||.. +++|.+|
T Consensus 171 nDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESH--------------TAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ld 236 (830)
T KOG4152|consen 171 NDLYILELRPGSGVVAWDIPITYGVLPPPRESH--------------TAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLD 236 (830)
T ss_pred cceEEEEeccCCceEEEecccccCCCCCCcccc--------------eeEEEEeccCCcceEEEEcccccccccceeEEe
Confidence 99999988755 38765 3588899998 45555 24899999854 7999999
Q ss_pred CCCCcEEEec---cCCCcccCCCcccEEEEEeCCEEEEEcCCCCCC-------------CCeeEEEEeecCCCCCCceEe
Q 013929 353 KERRLWFTIG---RLPERANSMNGWGLAFRACGDRLIVIGGPKASG-------------EGFIELNSWVPSEGPPQWNLL 416 (433)
Q Consensus 353 ~~~~~W~~v~---~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~-------------~~~~~~~~~~~~~~~~~W~~v 416 (433)
+++..|.+.. ..|.+|+- |+...+++++|||||....- ..+..+.+|++ .+.+|+.+
T Consensus 237 l~Tl~W~kp~~~G~~PlPRSL-----Hsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNl--dt~~W~tl 309 (830)
T KOG4152|consen 237 LDTLTWNKPSLSGVAPLPRSL-----HSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNL--DTMAWETL 309 (830)
T ss_pred cceeecccccccCCCCCCccc-----ccceeecceeEEecceeeeeccccccccccceeeeccceeeeee--cchheeee
Confidence 9999999874 23333331 66778999999999963211 12234455666 46889876
Q ss_pred -------cccCCCcEEEEEEEecC
Q 013929 417 -------ARKQSANFVYNCAVMGC 433 (433)
Q Consensus 417 -------~~~p~~~~~~~~~v~~~ 433 (433)
...|.+|..|+++.+|.
T Consensus 310 ~~d~~ed~tiPR~RAGHCAvAigt 333 (830)
T KOG4152|consen 310 LMDTLEDNTIPRARAGHCAVAIGT 333 (830)
T ss_pred eeccccccccccccccceeEEecc
Confidence 23789999999999873
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.79 E-value=3.3e-17 Score=149.03 Aligned_cols=250 Identities=19% Similarity=0.264 Sum_probs=177.1
Q ss_pred cceEEEEecCC--CcEEeCCCCCCccccccCCceEEEECCEEEEECCCCCC----cccceeEEEEEcCCCceecCCC-CC
Q 013929 140 LLEWEAFDPIR--RRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTA----HHISHVIYRYSILTNSWSSGMR-MN 212 (433)
Q Consensus 140 ~~~~~~yd~~~--~~W~~l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~yd~~t~~W~~~~~-~p 212 (433)
...++..|... ..|+.+...|...+- ....++++++||+|||.... ....+++|+|||.+++|+++.. .|
T Consensus 57 G~afy~ldL~~~~k~W~~~a~FpG~~rn---qa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP 133 (381)
T COG3055 57 GTAFYVLDLKKPGKGWTKIADFPGGARN---QAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSP 133 (381)
T ss_pred CccceehhhhcCCCCceEcccCCCcccc---cchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccc
Confidence 34566667654 689999988875432 33457789999999987422 3467899999999999998865 46
Q ss_pred CCcceeeEEEeCC-EEEEEccCCCC---------------------------------CCcCCceEEEeCCCCCeEEcCC
Q 013929 213 APRCLFGSASLGE-IAILAGGSDLE---------------------------------GNILSSAEMYNSETQTWKVLPS 258 (433)
Q Consensus 213 ~~r~~~~~~~~~~-~iyv~GG~~~~---------------------------------~~~~~~~~~yd~~t~~W~~~~~ 258 (433)
....+++++.+++ +||++||.+.. ......+..|||.++.|+.+..
T Consensus 134 ~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~ 213 (381)
T COG3055 134 TGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE 213 (381)
T ss_pred cccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCc
Confidence 7778889999988 99999997421 0135678899999999999986
Q ss_pred CCC-CCcceeEEEECCEEEEEccccCCCCcccceEEEEECC--CCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEEC
Q 013929 259 MKN-PRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLE--TETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVN 335 (433)
Q Consensus 259 ~p~-~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~--t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~ 335 (433)
.|. ++++.+.+.-++++.++-|.-. .......+..++.. ..+|..++++|.+..... +. ..+...-..+
T Consensus 214 ~pf~~~aGsa~~~~~n~~~lInGEiK-pGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~---eG----vAGaf~G~s~ 285 (381)
T COG3055 214 NPFYGNAGSAVVIKGNKLTLINGEIK-PGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNK---EG----VAGAFSGKSN 285 (381)
T ss_pred CcccCccCcceeecCCeEEEEcceec-CCccccceeEEEeccCceeeeeccCCCCCCCCCc---cc----cceeccceeC
Confidence 664 4566555555677888877652 23344455666665 557999988776654420 11 1111233457
Q ss_pred CEEEEEecC------------------------CCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCC
Q 013929 336 NELYAADYA------------------------DMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGP 391 (433)
Q Consensus 336 ~~ly~~gg~------------------------~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~ 391 (433)
+.+.+.||. +.+|+.+| .+.|+.+..||..+. ++ +.+..++.||++||+
T Consensus 286 ~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~----YG-~s~~~nn~vl~IGGE 358 (381)
T COG3055 286 GEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLA----YG-VSLSYNNKVLLIGGE 358 (381)
T ss_pred CeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCcc----ce-EEEecCCcEEEEccc
Confidence 777777762 25788888 999999999999774 33 455789999999999
Q ss_pred CCCCCCeeEEEEeecC
Q 013929 392 KASGEGFIELNSWVPS 407 (433)
Q Consensus 392 ~~~~~~~~~~~~~~~~ 407 (433)
...+.....+....++
T Consensus 359 ~~~Gka~~~v~~l~~~ 374 (381)
T COG3055 359 TSGGKATTRVYSLSWD 374 (381)
T ss_pred cCCCeeeeeEEEEEEc
Confidence 8877666666554443
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.64 E-value=5.7e-15 Score=134.56 Aligned_cols=192 Identities=21% Similarity=0.301 Sum_probs=154.7
Q ss_pred cCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCC--CeEEcCCCCC-CCcceeEEEECCEEEEEccccC
Q 013929 207 SGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQ--TWKVLPSMKN-PRKMCSGVFMDGKFYVIGGIGG 283 (433)
Q Consensus 207 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~-~r~~~~~~~~~g~lyv~GG~~~ 283 (433)
.+|.+|.+.-.-+.+..++.+||-=|..+ ...+..|++.. .|++++..|- +|....+++++++||+|||...
T Consensus 29 ~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G-----~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk 103 (381)
T COG3055 29 QLPDLPVGFKNGAGALIGDTVYVGLGSAG-----TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGK 103 (381)
T ss_pred cCCCCCccccccccceecceEEEEeccCC-----ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeecccc
Confidence 56788888766677888999999755333 34677777754 6999998875 5788888999999999999864
Q ss_pred CC---CcccceEEEEECCCCceEecCC-CCCCCCCCCCCCcCCCCcCCCCEEEEECC-EEEEEecC--------------
Q 013929 284 SD---SKVLTCGEEYDLETETWTEIPN-MSPARGGAARGTEMPASAEAPPLVAVVNN-ELYAADYA-------------- 344 (433)
Q Consensus 284 ~~---~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~~~~~~~~~~~~~~~-~ly~~gg~-------------- 344 (433)
.. ...++++++||+.+++|+++.. .|....++ +.+..++ +||++||.
T Consensus 104 ~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~--------------~~~~~~~~~i~f~GGvn~~if~~yf~dv~~ 169 (381)
T COG3055 104 SVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGA--------------STFSLNGTKIYFFGGVNQNIFNGYFEDVGA 169 (381)
T ss_pred CCCCCceEeeeeEEecCCCChhheeccccccccccc--------------eeEecCCceEEEEccccHHhhhhhHHhhhh
Confidence 33 3577899999999999999975 34454554 6677777 99999972
Q ss_pred -------------------------CCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCee
Q 013929 345 -------------------------DMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFI 399 (433)
Q Consensus 345 -------------------------~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~ 399 (433)
+..++.|||.+++|+.+...|.... ++++++.-+++|.++-|+...+.++.
T Consensus 170 a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~----aGsa~~~~~n~~~lInGEiKpGLRt~ 245 (381)
T COG3055 170 AGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGN----AGSAVVIKGNKLTLINGEIKPGLRTA 245 (381)
T ss_pred hcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCc----cCcceeecCCeEEEEcceecCCcccc
Confidence 2578999999999999998887664 35666667888999999999999999
Q ss_pred EEEEeecCCCCCCceEecccCC
Q 013929 400 ELNSWVPSEGPPQWNLLARKQS 421 (433)
Q Consensus 400 ~~~~~~~~~~~~~W~~v~~~p~ 421 (433)
++..+++..+..+|..++++|.
T Consensus 246 ~~k~~~~~~~~~~w~~l~~lp~ 267 (381)
T COG3055 246 EVKQADFGGDNLKWLKLSDLPA 267 (381)
T ss_pred ceeEEEeccCceeeeeccCCCC
Confidence 9999999888899999998874
No 29
>PF13964 Kelch_6: Kelch motif
Probab=99.28 E-value=1e-11 Score=83.68 Aligned_cols=50 Identities=36% Similarity=0.632 Sum_probs=46.3
Q ss_pred CcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCC
Q 013929 214 PRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPR 263 (433)
Q Consensus 214 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r 263 (433)
||..|++++++++|||+||........+++++||+++++|+++++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 68899999999999999999875567899999999999999999999887
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.17 E-value=1.2e-11 Score=117.08 Aligned_cols=196 Identities=15% Similarity=0.100 Sum_probs=132.9
Q ss_pred cCCCcEEeCCCCCC------ccccccCCceEEEECC--EEEEECCCCCCcccceeEEEEEcCCCceecC---CCCCCCcc
Q 013929 148 PIRRRWMHLPRMTS------NECFMCSDKESLAVGT--ELLVFGRELTAHHISHVIYRYSILTNSWSSG---MRMNAPRC 216 (433)
Q Consensus 148 ~~~~~W~~l~~~p~------~~~~~~~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~r~ 216 (433)
+-+.+|.++++... .+.....+|.++...+ .||+.||.++. ....++|.|+...+.|..+ ...|..|.
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~-~~l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs 314 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT-QDLADFWAYSVKENQWTCINRDTEGPGARS 314 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccc-hhHHHHHhhcCCcceeEEeecCCCCCcchh
Confidence 44678988875431 1112223566666544 99999999544 4567899999999999866 34788999
Q ss_pred eeeEEEeCC--EEEEEccCCCCC-----CcCCceEEEeCCCCCeEEcCC------CCCCCcceeEEEECCE--EEEEccc
Q 013929 217 LFGSASLGE--IAILAGGSDLEG-----NILSSAEMYNSETQTWKVLPS------MKNPRKMCSGVFMDGK--FYVIGGI 281 (433)
Q Consensus 217 ~~~~~~~~~--~iyv~GG~~~~~-----~~~~~~~~yd~~t~~W~~~~~------~p~~r~~~~~~~~~g~--lyv~GG~ 281 (433)
.|.++..-. ++|++|-+-+.. ...+++|+||..++.|..+.. -|...+.|.+++.+.+ +||+||+
T Consensus 315 CHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr 394 (723)
T KOG2437|consen 315 CHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGR 394 (723)
T ss_pred hhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCe
Confidence 999998865 999999764332 246789999999999998752 2444667888888777 9999998
Q ss_pred cCCCC-cccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCC
Q 013929 282 GGSDS-KVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADM 346 (433)
Q Consensus 282 ~~~~~-~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~ 346 (433)
.-... .....++.||.....|..+..-...+..+ +....+.-+++.-.+.-++.+|++||...
T Consensus 395 ~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~v--vE~~~sR~ghcmE~~~~n~~ly~fggq~s 458 (723)
T KOG2437|consen 395 ILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPV--VEDIQSRIGHCMEFHSKNRCLYVFGGQRS 458 (723)
T ss_pred eccCCCccccceEEEecCCccHHHHHHHHhhcCcc--hhHHHHHHHHHHHhcCCCCeEEeccCccc
Confidence 74433 45677899999999999875322222111 00000000111123455788999998654
No 31
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.17 E-value=2e-11 Score=115.52 Aligned_cols=184 Identities=18% Similarity=0.208 Sum_probs=128.8
Q ss_pred cCCCceecCCCC----------CCCcceeeEEEeCC--EEEEEccCCCCCCcCCceEEEeCCCCCeEEcC---CCCCCCc
Q 013929 200 ILTNSWSSGMRM----------NAPRCLFGSASLGE--IAILAGGSDLEGNILSSAEMYNSETQTWKVLP---SMKNPRK 264 (433)
Q Consensus 200 ~~t~~W~~~~~~----------p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~r~ 264 (433)
+.+-+|.++++. |..|.+|.++...+ -||+.||+++. +-+.++|.|+...+.|..+. ..|..|.
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~-~~l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs 314 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT-QDLADFWAYSVKENQWTCINRDTEGPGARS 314 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccc-hhHHHHHhhcCCcceeEEeecCCCCCcchh
Confidence 446679877542 56799999999866 89999999987 45899999999999998874 4788898
Q ss_pred ceeEEEEC--CEEEEEccccCCC----CcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCE-
Q 013929 265 MCSGVFMD--GKFYVIGGIGGSD----SKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNE- 337 (433)
Q Consensus 265 ~~~~~~~~--g~lyv~GG~~~~~----~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~- 337 (433)
.|-++..- .++|+.|-+-+.. .....++|+||..++.|..+.--...-.+.+.+++ ..+++.+.+
T Consensus 315 CHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfD--------HqM~Vd~~k~ 386 (723)
T KOG2437|consen 315 CHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFD--------HQMCVDSEKH 386 (723)
T ss_pred hhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeec--------ceeeEecCcc
Confidence 88888654 4999999765332 23456799999999999988522111111111111 267777776
Q ss_pred -EEEEecCC--------CeEEEEeCCCCcEEEeccCCC-------cccCCCcccEEEEEeCCEEEEEcCCC
Q 013929 338 -LYAADYAD--------MEVRKYDKERRLWFTIGRLPE-------RANSMNGWGLAFRACGDRLIVIGGPK 392 (433)
Q Consensus 338 -ly~~gg~~--------~~i~~yd~~~~~W~~v~~lp~-------~~~~~~~~~~~~~~~~~~l~v~GG~~ 392 (433)
||++||.. +.++.||.....|..+..--. ...++.++.+-++.-+..+|++||..
T Consensus 387 ~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~ 457 (723)
T KOG2437|consen 387 MIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQR 457 (723)
T ss_pred eEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcc
Confidence 99999832 579999999999987752111 11111122233445577899999863
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.16 E-value=9.1e-11 Score=79.05 Aligned_cols=50 Identities=44% Similarity=0.698 Sum_probs=45.4
Q ss_pred CCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCC
Q 013929 262 PRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPAR 312 (433)
Q Consensus 262 ~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r 312 (433)
+|..+++++++++|||+||.... ....+++++||+++++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC-CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 58899999999999999999843 567899999999999999999999876
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.03 E-value=2.2e-10 Score=76.16 Aligned_cols=47 Identities=34% Similarity=0.584 Sum_probs=43.0
Q ss_pred CcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCC
Q 013929 214 PRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMK 260 (433)
Q Consensus 214 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p 260 (433)
||..|++++++++|||+||.+.....++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 68899999999999999999886678999999999999999998876
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.95 E-value=1.8e-09 Score=72.29 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=43.1
Q ss_pred CCEEEEECCCC-CCcccceeEEEEEcCCCceecCCCCCCCcceeeEEEe
Q 013929 176 GTELLVFGREL-TAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL 223 (433)
Q Consensus 176 ~~~iyv~GG~~-~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 223 (433)
+++||||||.. ......+++|+||+.+++|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 57899999997 4566889999999999999999999999999999864
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.92 E-value=1.8e-09 Score=71.72 Aligned_cols=47 Identities=43% Similarity=0.748 Sum_probs=42.3
Q ss_pred CCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCC
Q 013929 262 PRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMS 309 (433)
Q Consensus 262 ~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p 309 (433)
+|..+++++++++||++||.+. ....++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDG-NNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBES-TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecc-cCceeeeEEEEeCCCCEEEEcCCCC
Confidence 5889999999999999999995 4678999999999999999998875
No 36
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.91 E-value=3.8e-09 Score=70.65 Aligned_cols=47 Identities=26% Similarity=0.410 Sum_probs=41.6
Q ss_pred CcceeeEEEeCCEEEEEccC--CCCCCcCCceEEEeCCCCCeEEcCCCC
Q 013929 214 PRCLFGSASLGEIAILAGGS--DLEGNILSSAEMYNSETQTWKVLPSMK 260 (433)
Q Consensus 214 ~r~~~~~~~~~~~iyv~GG~--~~~~~~~~~~~~yd~~t~~W~~~~~~p 260 (433)
+|..|++++++++|||+||+ +......+++++||+++++|+.++++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68899999999999999999 444467899999999999999998875
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.91 E-value=3.7e-09 Score=70.75 Aligned_cols=47 Identities=23% Similarity=0.429 Sum_probs=42.5
Q ss_pred CCEEEEEccCC-CCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEE
Q 013929 224 GEIAILAGGSD-LEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF 270 (433)
Q Consensus 224 ~~~iyv~GG~~-~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~ 270 (433)
+++|||+||.+ .....++++++||+.+++|++++++|.+|.+|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 57999999998 445679999999999999999999999999999876
No 38
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.87 E-value=2e-09 Score=72.18 Aligned_cols=47 Identities=34% Similarity=0.560 Sum_probs=32.2
Q ss_pred CcceeeEEEe-CCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCC
Q 013929 214 PRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMK 260 (433)
Q Consensus 214 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p 260 (433)
||.+|+++.+ +++|||+||.+..+..++++++||+++++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 6899999998 5899999999887678999999999999999998877
No 39
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.86 E-value=1.3e-06 Score=79.41 Aligned_cols=184 Identities=10% Similarity=0.077 Sum_probs=109.5
Q ss_pred eeEEEEEcCCCceecCCCCCCCcceee--EEE--e-----CCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCC-
Q 013929 193 HVIYRYSILTNSWSSGMRMNAPRCLFG--SAS--L-----GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNP- 262 (433)
Q Consensus 193 ~~~~~yd~~t~~W~~~~~~p~~r~~~~--~~~--~-----~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~- 262 (433)
..++++||.|++|+.+|+.+.++.... ... + ..||..+...... .....+++|+..+++|+.+...+..
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~Wr~~~~~~~~~ 92 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNSWRTIECSPPHH 92 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCCccccccCCCCc
Confidence 368999999999999986554211111 111 1 2256666443211 1345789999999999998743322
Q ss_pred CcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEe-cCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEE
Q 013929 263 RKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTE-IPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAA 341 (433)
Q Consensus 263 r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~ 341 (433)
......+.++|.+|.+...... .....|..||+.+++|++ ++ +|...... .....++..+|+|.++
T Consensus 93 ~~~~~~v~~~G~lyw~~~~~~~--~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~----------~~~~~L~~~~G~L~~v 159 (230)
T TIGR01640 93 PLKSRGVCINGVLYYLAYTLKT--NPDYFIVSFDVSSERFKEFIP-LPCGNSDS----------VDYLSLINYKGKLAVL 159 (230)
T ss_pred cccCCeEEECCEEEEEEEECCC--CCcEEEEEEEcccceEeeeee-cCcccccc----------ccceEEEEECCEEEEE
Confidence 1122377899999999754311 111268999999999995 54 34332210 0012578889999998
Q ss_pred ecC----CCeEEEEe-CCCCcEEEeccCCC--cccCCCcccEEEEEeCCEEEEEcC
Q 013929 342 DYA----DMEVRKYD-KERRLWFTIGRLPE--RANSMNGWGLAFRACGDRLIVIGG 390 (433)
Q Consensus 342 gg~----~~~i~~yd-~~~~~W~~v~~lp~--~~~~~~~~~~~~~~~~~~l~v~GG 390 (433)
... .-+||+.+ ...++|+++-.++. ...............+|+|++...
T Consensus 160 ~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~ 215 (230)
T TIGR01640 160 KQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE 215 (230)
T ss_pred EecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence 642 23677764 44567998754442 111111011334456788888765
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.83 E-value=1.1e-08 Score=68.37 Aligned_cols=48 Identities=38% Similarity=0.574 Sum_probs=41.9
Q ss_pred CCcceeEEEECCEEEEEccc-cCCCCcccceEEEEECCCCceEecCCCC
Q 013929 262 PRKMCSGVFMDGKFYVIGGI-GGSDSKVLTCGEEYDLETETWTEIPNMS 309 (433)
Q Consensus 262 ~r~~~~~~~~~g~lyv~GG~-~~~~~~~~~~v~~yd~~t~~W~~~~~~p 309 (433)
+|..|++++++++|||+||+ ........+++++||+++++|+++++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 58899999999999999999 3345678899999999999999998764
No 41
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.79 E-value=1.8e-07 Score=84.09 Aligned_cols=152 Identities=17% Similarity=0.195 Sum_probs=100.3
Q ss_pred EEEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCC----CCeEEcC-CCCCCCcceeEE
Q 013929 195 IYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSET----QTWKVLP-SMKNPRKMCSGV 269 (433)
Q Consensus 195 ~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t----~~W~~~~-~~p~~r~~~~~~ 269 (433)
-.+||+.|++++.+.-..-..+...+..-+|++++.||..+. ...+..|++.+ ..|.+.+ .|..+|++.++.
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 467999999999876433333333334458899999997652 45678888876 6798876 589999999887
Q ss_pred EE-CCEEEEEccccCCCCcccceEEEEECCCC-----ceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEec
Q 013929 270 FM-DGKFYVIGGIGGSDSKVLTCGEEYDLETE-----TWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADY 343 (433)
Q Consensus 270 ~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg 343 (433)
.+ ||+++|+||.... ..|.|..... .|..+....... ....++...+.-+|+||+++.
T Consensus 125 ~L~DG~vlIvGG~~~~------t~E~~P~~~~~~~~~~~~~l~~~~~~~----------~~nlYP~~~llPdG~lFi~an 188 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNNP------TYEFWPPKGPGPGPVTLPFLSQTSDTL----------PNNLYPFVHLLPDGNLFIFAN 188 (243)
T ss_pred ECCCCCEEEEeCcCCC------cccccCCccCCCCceeeecchhhhccC----------ccccCceEEEcCCCCEEEEEc
Confidence 64 8999999998722 1233332111 121111111000 112344566777999999975
Q ss_pred CCCeEEEEeCCCCcE-EEeccCCCc
Q 013929 344 ADMEVRKYDKERRLW-FTIGRLPER 367 (433)
Q Consensus 344 ~~~~i~~yd~~~~~W-~~v~~lp~~ 367 (433)
..-..||+.++++ +.++.+|..
T Consensus 189 --~~s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 189 --RGSIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred --CCcEEEeCCCCeEEeeCCCCCCC
Confidence 4567889999987 788888875
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.75 E-value=1.4e-08 Score=68.03 Aligned_cols=48 Identities=40% Similarity=0.607 Sum_probs=31.3
Q ss_pred CCcceeEEEE-CCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCC
Q 013929 262 PRKMCSGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSP 310 (433)
Q Consensus 262 ~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~ 310 (433)
+|.+|+++.+ +++||++||.+.. ...++++++||+++++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~-~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSS-GSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE--TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCC-CcccCCEEEEECCCCEEEECCCCCC
Confidence 5889999988 5999999999843 4688999999999999999987763
No 43
>smart00612 Kelch Kelch domain.
Probab=98.69 E-value=3e-08 Score=65.61 Aligned_cols=47 Identities=36% Similarity=0.583 Sum_probs=41.5
Q ss_pred EEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEECC
Q 013929 226 IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDG 273 (433)
Q Consensus 226 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g 273 (433)
+||++||.... ...+++++||+.+++|+.+++|+.+|..+++++++|
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998753 468899999999999999999999999999888765
No 44
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.67 E-value=1e-05 Score=73.54 Aligned_cols=201 Identities=11% Similarity=0.036 Sum_probs=115.8
Q ss_pred ceEEEEecCCCcEEeCCCCCCccccccCCceEEEECC-----EEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCC-
Q 013929 141 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGT-----ELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAP- 214 (433)
Q Consensus 141 ~~~~~yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-----~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~- 214 (433)
..+.++||.|++|..+|+.+.++............+. +|..+..... ......+.+|+..++.|+.+...+..
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~-~~~~~~~~Vys~~~~~Wr~~~~~~~~~ 92 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG-NRNQSEHQVYTLGSNSWRTIECSPPHH 92 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC-CCCCccEEEEEeCCCCccccccCCCCc
Confidence 5678899999999999876543221111011112221 4444432211 11234689999999999988743321
Q ss_pred cceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEE-cCCCCCCC----cceeEEEECCEEEEEccccCCCCccc
Q 013929 215 RCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKV-LPSMKNPR----KMCSGVFMDGKFYVIGGIGGSDSKVL 289 (433)
Q Consensus 215 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~r----~~~~~~~~~g~lyv~GG~~~~~~~~~ 289 (433)
......+.++|.||.+...... .....+..||..+.+|++ ++ +|..+ .....+.++|+|.++...... ..
T Consensus 93 ~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~---~~ 167 (230)
T TIGR01640 93 PLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKDT---NN 167 (230)
T ss_pred cccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCCC---Cc
Confidence 1122367789999998753321 111269999999999995 44 34332 234567889999988654311 11
Q ss_pred ceEEEEE-CCCCceEecCCCCC--CCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecC--CCeEEEEeCCCC
Q 013929 290 TCGEEYD-LETETWTEIPNMSP--ARGGAARGTEMPASAEAPPLVAVVNNELYAADYA--DMEVRKYDKERR 356 (433)
Q Consensus 290 ~~v~~yd-~~t~~W~~~~~~p~--~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~--~~~i~~yd~~~~ 356 (433)
-+||+.+ -....|++.-.++. ..... ....+..+..+|+|++.... ..-+..||++++
T Consensus 168 ~~IWvl~d~~~~~W~k~~~i~~~~~~~~~---------~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 168 FDLWVLNDAGKQEWSKLFTVPIPPLPDLV---------DDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEEEEECCCCCCceeEEEEEcCcchhhhh---------hheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence 3566664 33567987533321 11110 00012456678888887653 223899998875
No 45
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.65 E-value=9.2e-06 Score=77.43 Aligned_cols=39 Identities=13% Similarity=0.041 Sum_probs=35.3
Q ss_pred CCCCCCchhHHHhhccccC-cccchhhhhhcHHHHHhhcC
Q 013929 79 SLIQPIGRDNSISCLIRCS-RSDYGSIASLNQSFRSLIRS 117 (433)
Q Consensus 79 ~~~~~LP~dl~~~iL~rlP-~~~~~~~~~V~k~w~~ll~~ 117 (433)
..|..||+||+..|..||| +..+.++|+||++||+.+..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 4589999999999999996 78999999999999998764
No 46
>smart00612 Kelch Kelch domain.
Probab=98.65 E-value=4.8e-08 Score=64.58 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=40.7
Q ss_pred EEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcceeeEEEeCC
Q 013929 178 ELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGE 225 (433)
Q Consensus 178 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~ 225 (433)
+||++||... ....+++++|||.+++|+.+++||.+|..|+++++++
T Consensus 1 ~iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG-GQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCC-CceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 4899999854 3457789999999999999999999999999888764
No 47
>PF13854 Kelch_5: Kelch motif
Probab=98.45 E-value=5e-07 Score=58.05 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=36.3
Q ss_pred CCCCcceeeEEEeCCEEEEEccCCC-CCCcCCceEEEeCCCC
Q 013929 211 MNAPRCLFGSASLGEIAILAGGSDL-EGNILSSAEMYNSETQ 251 (433)
Q Consensus 211 ~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~t~ 251 (433)
+|.+|..|++++++++|||+||.+. .....+++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4789999999999999999999984 5578999999998763
No 48
>PLN02772 guanylate kinase
Probab=98.43 E-value=1.7e-06 Score=82.66 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=68.3
Q ss_pred CCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEc---CCCCCCCcceeEEEE-CCEEEEEccccCCCCcc
Q 013929 213 APRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVL---PSMKNPRKMCSGVFM-DGKFYVIGGIGGSDSKV 288 (433)
Q Consensus 213 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~r~~~~~~~~-~g~lyv~GG~~~~~~~~ 288 (433)
.++..++++.+++++||+||.++.....+.+++||..|++|... +..|.+|.+|+++++ +++|+|+++....
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~---- 98 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP---- 98 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC----
Confidence 47888999999999999999877544678999999999999875 477899999999988 6899999876532
Q ss_pred cceEEEEECCCC
Q 013929 289 LTCGEEYDLETE 300 (433)
Q Consensus 289 ~~~v~~yd~~t~ 300 (433)
..++|.....|.
T Consensus 99 ~~~~w~l~~~t~ 110 (398)
T PLN02772 99 DDSIWFLEVDTP 110 (398)
T ss_pred ccceEEEEcCCH
Confidence 256676666553
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.42 E-value=4e-06 Score=75.52 Aligned_cols=148 Identities=20% Similarity=0.321 Sum_probs=99.4
Q ss_pred EEEEecCCCcEEeCCCCCCccccccCCceEEEECCEEEEECCCCCCcccceeEEEEEcCC----CceecCC-CCCCCcce
Q 013929 143 WEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILT----NSWSSGM-RMNAPRCL 217 (433)
Q Consensus 143 ~~~yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t----~~W~~~~-~~p~~r~~ 217 (433)
-..||+.+++++.+... ...+|+++ .+..+|.+++.||...+ .+.+..|+|.+ ..|.+.+ .|..+|.+
T Consensus 48 s~~yD~~tn~~rpl~v~---td~FCSgg-~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY 120 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ---TDTFCSGG-AFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPNDMQSGRWY 120 (243)
T ss_pred EEEEecCCCcEEeccCC---CCCcccCc-CCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcccccCCCcc
Confidence 34699999999987643 23344433 34458899999998543 33467788876 5798776 58999999
Q ss_pred eeEEEe-CCEEEEEccCCCCCCcCCceEEEeCCCC-----CeEEcCC----CCCCCcceeEEEECCEEEEEccccCCCCc
Q 013929 218 FGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQ-----TWKVLPS----MKNPRKMCSGVFMDGKFYVIGGIGGSDSK 287 (433)
Q Consensus 218 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~-----~W~~~~~----~p~~r~~~~~~~~~g~lyv~GG~~~~~~~ 287 (433)
+++..+ +|+|+|+||... ...+.+..... .|..+.. .+...+-+..+.-+|+||+++...
T Consensus 121 pT~~~L~DG~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~----- 190 (243)
T PF07250_consen 121 PTATTLPDGRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG----- 190 (243)
T ss_pred ccceECCCCCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC-----
Confidence 988887 889999999762 22333333221 1222222 222333445566799999997654
Q ss_pred ccceEEEEECCCCce-EecCCCCCC
Q 013929 288 VLTCGEEYDLETETW-TEIPNMSPA 311 (433)
Q Consensus 288 ~~~~v~~yd~~t~~W-~~~~~~p~~ 311 (433)
...||..++++ +.++.+|..
T Consensus 191 ----s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 191 ----SIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred ----cEEEeCCCCeEEeeCCCCCCC
Confidence 37799999987 788887753
No 50
>PF13854 Kelch_5: Kelch motif
Probab=98.36 E-value=1.2e-06 Score=56.22 Aligned_cols=42 Identities=24% Similarity=0.356 Sum_probs=36.7
Q ss_pred CCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCC
Q 013929 259 MKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETE 300 (433)
Q Consensus 259 ~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~ 300 (433)
+|.+|..|++++++++||++||..+......+++++||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 478899999999999999999998645678899999998763
No 51
>PLN02772 guanylate kinase
Probab=98.36 E-value=3.1e-06 Score=80.98 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=64.9
Q ss_pred CceEEEECCEEEEECCCCCCcccceeEEEEEcCCCceecC---CCCCCCcceeeEEEe-CCEEEEEccCCCCCCcCCceE
Q 013929 169 DKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSG---MRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAE 244 (433)
Q Consensus 169 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~ 244 (433)
.++++++++++||+||.++....++.+++||+.|++|... ...|.+|.+|+++++ +++|+|+++.... -.++|
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~---~~~~w 103 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP---DDSIW 103 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---ccceE
Confidence 4677999999999999877655788999999999999764 467999999999998 6799999865433 25677
Q ss_pred EEeCCCC
Q 013929 245 MYNSETQ 251 (433)
Q Consensus 245 ~yd~~t~ 251 (433)
.+...|.
T Consensus 104 ~l~~~t~ 110 (398)
T PLN02772 104 FLEVDTP 110 (398)
T ss_pred EEEcCCH
Confidence 7776653
No 52
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.32 E-value=2.5e-07 Score=61.19 Aligned_cols=41 Identities=10% Similarity=0.199 Sum_probs=36.0
Q ss_pred CCCCchhHHHhhccccCcccchhhhhhcHHHHHhhcCccee
Q 013929 81 IQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELY 121 (433)
Q Consensus 81 ~~~LP~dl~~~iL~rlP~~~~~~~~~V~k~w~~ll~~~~~~ 121 (433)
|..||+|++.+|+..||..++.+++.|||+|+.++.++.+|
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW 41 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLW 41 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhh
Confidence 57899999999999999999999999999999999887655
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.00 E-value=0.011 Score=58.42 Aligned_cols=232 Identities=13% Similarity=0.122 Sum_probs=124.7
Q ss_pred EEEeeccceEEEEecCC--CcEEeCCCCCCcc-c---cccCCceEEEECCEEEEECCCCCCcccceeEEEEEcCCCc--e
Q 013929 134 VYFSCHLLEWEAFDPIR--RRWMHLPRMTSNE-C---FMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS--W 205 (433)
Q Consensus 134 l~~~~~~~~~~~yd~~~--~~W~~l~~~p~~~-~---~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W 205 (433)
+|+......+.+||..+ ..|..-..-.... . ........++.++.||+.+. ...++.+|..|++ |
T Consensus 72 vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-------~g~l~ald~~tG~~~W 144 (394)
T PRK11138 72 VYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-------KGQVYALNAEDGEVAW 144 (394)
T ss_pred EEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-------CCEEEEEECCCCCCcc
Confidence 33333344677888775 4576432211000 0 00011234566888887542 2358999999875 8
Q ss_pred ecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCC--eEEcCCCCC--CCcceeEEEECCEEEEEccc
Q 013929 206 SSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKN--PRKMCSGVFMDGKFYVIGGI 281 (433)
Q Consensus 206 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~~g~lyv~GG~ 281 (433)
+.-.+ .+ ...+.++.++.||+..+ ...++.+|+.+++ |+.-...|. .+...+.++.++.+|+..+.
T Consensus 145 ~~~~~--~~-~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~ 214 (394)
T PRK11138 145 QTKVA--GE-ALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN 214 (394)
T ss_pred cccCC--Cc-eecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC
Confidence 64321 11 12233456888887532 2468999999876 877543322 12223445667777775432
Q ss_pred cCCCCcccceEEEEECCCCc--eEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc--
Q 013929 282 GGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRL-- 357 (433)
Q Consensus 282 ~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~~-- 357 (433)
..+..+|+++++ |+.-...+....... .. .....+.++.++.+|+.+ ..+.++.+|+.+++
T Consensus 215 --------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~---~~---~~~~~sP~v~~~~vy~~~-~~g~l~ald~~tG~~~ 279 (394)
T PRK11138 215 --------GRVSAVLMEQGQLIWQQRISQPTGATEID---RL---VDVDTTPVVVGGVVYALA-YNGNLVALDLRSGQIV 279 (394)
T ss_pred --------CEEEEEEccCChhhheeccccCCCccchh---cc---cccCCCcEEECCEEEEEE-cCCeEEEEECCCCCEE
Confidence 246778888764 764322221100000 00 000013456789999876 45789999999874
Q ss_pred EEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecCCCCCCce
Q 013929 358 WFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWN 414 (433)
Q Consensus 358 W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~W~ 414 (433)
|+.- +... ...+..+++||+.... ..+..++....+..|+
T Consensus 280 W~~~--~~~~--------~~~~~~~~~vy~~~~~-------g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 280 WKRE--YGSV--------NDFAVDGGRIYLVDQN-------DRVYALDTRGGVELWS 319 (394)
T ss_pred Eeec--CCCc--------cCcEEECCEEEEEcCC-------CeEEEEECCCCcEEEc
Confidence 8752 2111 1234568899987632 1244455544445564
No 54
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.96 E-value=3.3e-06 Score=53.87 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=36.4
Q ss_pred CchhHHHhhccccCcccchhhhhhcHHHHHhhcCcceee
Q 013929 84 IGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYR 122 (433)
Q Consensus 84 LP~dl~~~iL~rlP~~~~~~~~~V~k~w~~ll~~~~~~~ 122 (433)
||+|++..|+.+++...+.+++.|||+|+.++..+.++.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887763
No 55
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.87 E-value=1.3e-06 Score=57.97 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=34.7
Q ss_pred CCCCchhHHHhhccccCcccchhhhhhcHHHHHhhcCccee
Q 013929 81 IQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELY 121 (433)
Q Consensus 81 ~~~LP~dl~~~iL~rlP~~~~~~~~~V~k~w~~ll~~~~~~ 121 (433)
|..||+|++.+|+.+++..++.+++.|||+|+.++.+..++
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~ 43 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLW 43 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCcc
Confidence 56799999999999999999999999999999999887654
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.87 E-value=0.0002 Score=65.80 Aligned_cols=43 Identities=9% Similarity=0.189 Sum_probs=38.9
Q ss_pred CCCCCc----hhHHHhhccccCcccchhhhhhcHHHHHhhcCcceee
Q 013929 80 LIQPIG----RDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYR 122 (433)
Q Consensus 80 ~~~~LP----~dl~~~iL~rlP~~~~~~~~~V~k~w~~ll~~~~~~~ 122 (433)
.+..|| +++.++||+.|...+++....|||+|++++.++-++.
T Consensus 74 Fi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 74 FITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 456799 9999999999999999999999999999999987753
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.82 E-value=0.008 Score=54.48 Aligned_cols=180 Identities=21% Similarity=0.227 Sum_probs=109.1
Q ss_pred cEEEEeeccceEEEEecCCCc--EEeCCCCCCccccccCCceEEEECCEEEEECCCCCCcccceeEEEEEcCCCc--ee-
Q 013929 132 HWVYFSCHLLEWEAFDPIRRR--WMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS--WS- 206 (433)
Q Consensus 132 ~~l~~~~~~~~~~~yd~~~~~--W~~l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~- 206 (433)
..+|+......++++|+.+.+ |..-. +.+.. ...+..++.+|+.... +.++.+|..+++ |+
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~-----~~~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDL--PGPIS-----GAPVVDGGRVYVGTSD-------GSLYALDAKTGKVLWSI 102 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGG-----SGEEEETTEEEEEETT-------SEEEEEETTTSCEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeec--ccccc-----ceeeecccccccccce-------eeeEecccCCcceeeee
Confidence 345665566789999987754 55433 22211 1136678899887632 268999988885 87
Q ss_pred cCCCCCCC--cceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCC--eEEcCCCCCCCc--------ceeEEEECCE
Q 013929 207 SGMRMNAP--RCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKNPRK--------MCSGVFMDGK 274 (433)
Q Consensus 207 ~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~--------~~~~~~~~g~ 274 (433)
.....+.. +.....++.++.+|+... ...+..+|+.+++ |+.-...+.... ....+..++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (238)
T PF13360_consen 103 YLTSSPPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGR 175 (238)
T ss_dssp EE-SSCTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTE
T ss_pred ccccccccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCE
Confidence 34332222 233344555778877643 3568999999875 876444433211 1233345688
Q ss_pred EEEEccccCCCCcccceEEEEECCCCc--eEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEe
Q 013929 275 FYVIGGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYD 352 (433)
Q Consensus 275 lyv~GG~~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd 352 (433)
+|+..+.. .+..+|..+++ |+.. +.. ... .....++.||+.. ..+.++++|
T Consensus 176 v~~~~~~g--------~~~~~d~~tg~~~w~~~--~~~-~~~---------------~~~~~~~~l~~~~-~~~~l~~~d 228 (238)
T PF13360_consen 176 VYVSSGDG--------RVVAVDLATGEKLWSKP--ISG-IYS---------------LPSVDGGTLYVTS-SDGRLYALD 228 (238)
T ss_dssp EEEECCTS--------SEEEEETTTTEEEEEEC--SS--ECE---------------CEECCCTEEEEEE-TTTEEEEEE
T ss_pred EEEEcCCC--------eEEEEECCCCCEEEEec--CCC-ccC---------------CceeeCCEEEEEe-CCCEEEEEE
Confidence 88885543 14556999987 8443 211 111 2556678888887 678999999
Q ss_pred CCCCc--EE
Q 013929 353 KERRL--WF 359 (433)
Q Consensus 353 ~~~~~--W~ 359 (433)
.++++ |+
T Consensus 229 ~~tG~~~W~ 237 (238)
T PF13360_consen 229 LKTGKVVWQ 237 (238)
T ss_dssp TTTTEEEEE
T ss_pred CCCCCEEeE
Confidence 99985 65
No 58
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.81 E-value=0.019 Score=56.28 Aligned_cols=205 Identities=13% Similarity=0.065 Sum_probs=112.3
Q ss_pred EEEEeeccceEEEEecCCC--cEEeCCCCCCccccccCCceEEEECCEEEEECCCCCCcccceeEEEEEcCCCc--eecC
Q 013929 133 WVYFSCHLLEWEAFDPIRR--RWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS--WSSG 208 (433)
Q Consensus 133 ~l~~~~~~~~~~~yd~~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~ 208 (433)
.+|+......++++|+.+. .|..-...+... .......+..++.+|+.. . ...++.+|+.+++ |+.-
T Consensus 147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~--~~~~~sp~~~~~~v~~~~-~------~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 147 LVVVRTNDGRLTALDAATGERLWTYSRVTPALT--LRGSASPVIADGGVLVGF-A------GGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred EEEEECCCCeEEEEEcCCCceeeEEccCCCcee--ecCCCCCEEECCEEEEEC-C------CCEEEEEEccCCCEeeeec
Confidence 3455545567889998764 476432222110 000112344566655432 1 2358899998874 7532
Q ss_pred CCCCCC-----c---ceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCC--eEEcCCCCCCCcceeEEEECCEEEEE
Q 013929 209 MRMNAP-----R---CLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKNPRKMCSGVFMDGKFYVI 278 (433)
Q Consensus 209 ~~~p~~-----r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~g~lyv~ 278 (433)
-..+.. + .....++.++.||+... ...++.||+.+++ |+.-. ......++.++++|+.
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-------~g~l~a~d~~tG~~~W~~~~-----~~~~~p~~~~~~vyv~ 285 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVVDGGQVYAVSY-------QGRVAALDLRSGRVLWKRDA-----SSYQGPAVDDNRLYVT 285 (377)
T ss_pred cccCCCCCchhhhhccCCccEEECCEEEEEEc-------CCEEEEEECCCCcEEEeecc-----CCccCceEeCCEEEEE
Confidence 111111 1 11233456888888642 2458899998764 76531 1123345678999987
Q ss_pred ccccCCCCcccceEEEEECCCCc--eEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCC
Q 013929 279 GGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERR 356 (433)
Q Consensus 279 GG~~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~ 356 (433)
... ..++.+|..+++ |+.-. +... .. .+.+..++.||+.. ..+.++.+|..++
T Consensus 286 ~~~--------G~l~~~d~~tG~~~W~~~~-~~~~-~~--------------ssp~i~g~~l~~~~-~~G~l~~~d~~tG 340 (377)
T TIGR03300 286 DAD--------GVVVALDRRSGSELWKNDE-LKYR-QL--------------TAPAVVGGYLVVGD-FEGYLHWLSREDG 340 (377)
T ss_pred CCC--------CeEEEEECCCCcEEEcccc-ccCC-cc--------------ccCEEECCEEEEEe-CCCEEEEEECCCC
Confidence 421 347889988764 76521 2111 11 13455788888754 5678999999877
Q ss_pred c--EEEeccCCCcccCCCcccEEEEEeCCEEEEEcC
Q 013929 357 L--WFTIGRLPERANSMNGWGLAFRACGDRLIVIGG 390 (433)
Q Consensus 357 ~--W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG 390 (433)
+ |+. + ++.... ..+.+..+++||+.+.
T Consensus 341 ~~~~~~-~-~~~~~~-----~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 341 SFVARL-K-TDGSGI-----ASPPVVVGDGLLVQTR 369 (377)
T ss_pred CEEEEE-E-cCCCcc-----ccCCEEECCEEEEEeC
Confidence 4 432 1 222111 1334567888887654
No 59
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.81 E-value=0.022 Score=56.23 Aligned_cols=204 Identities=10% Similarity=0.067 Sum_probs=116.4
Q ss_pred EEEEeeccceEEEEecCCCc--EEeCCCCCCccccccCCceEEEECCEEEEECCCCCCcccceeEEEEEcCCCc--eecC
Q 013929 133 WVYFSCHLLEWEAFDPIRRR--WMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS--WSSG 208 (433)
Q Consensus 133 ~l~~~~~~~~~~~yd~~~~~--W~~l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~ 208 (433)
.+|+......++++|+.+.+ |..-...|..... ...+-++.++.+|+..+. ..++.+|+.+++ |+.-
T Consensus 162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~--~~~sP~v~~~~v~~~~~~-------g~v~a~d~~~G~~~W~~~ 232 (394)
T PRK11138 162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR--GESAPATAFGGAIVGGDN-------GRVSAVLMEQGQLIWQQR 232 (394)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeecCCCCccccc--CCCCCEEECCEEEEEcCC-------CEEEEEEccCChhhheec
Confidence 35555555678999998755 7654332211100 011224456777765432 357888998875 7642
Q ss_pred CCCCCC--------cceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCC--eEEcCCCCCCCcceeEEEECCEEEEE
Q 013929 209 MRMNAP--------RCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKNPRKMCSGVFMDGKFYVI 278 (433)
Q Consensus 209 ~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~g~lyv~ 278 (433)
-..|.. ....+-++.++.||+.+. ...++.+|+.+++ |+.-. .. ....+..+++||+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-------~g~l~ald~~tG~~~W~~~~--~~---~~~~~~~~~~vy~~ 300 (394)
T PRK11138 233 ISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-------NGNLVALDLRSGQIVWKREY--GS---VNDFAVDGGRIYLV 300 (394)
T ss_pred cccCCCccchhcccccCCCcEEECCEEEEEEc-------CCeEEEEECCCCCEEEeecC--CC---ccCcEEECCEEEEE
Confidence 111111 111234566889998642 2468899999875 87521 11 11346778999997
Q ss_pred ccccCCCCcccceEEEEECCCCc--eEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCC
Q 013929 279 GGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERR 356 (433)
Q Consensus 279 GG~~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~ 356 (433)
... ..++.+|+.+++ |+.-. + ..+.. .+.++.++.||+.. ..+.++++|..++
T Consensus 301 ~~~--------g~l~ald~~tG~~~W~~~~-~-~~~~~--------------~sp~v~~g~l~v~~-~~G~l~~ld~~tG 355 (394)
T PRK11138 301 DQN--------DRVYALDTRGGVELWSQSD-L-LHRLL--------------TAPVLYNGYLVVGD-SEGYLHWINREDG 355 (394)
T ss_pred cCC--------CeEEEEECCCCcEEEcccc-c-CCCcc--------------cCCEEECCEEEEEe-CCCEEEEEECCCC
Confidence 432 247889998764 76421 1 11111 13566799998764 4678999999888
Q ss_pred c--EEEeccCCCcccCCCcccEEEEEeCCEEEEEc
Q 013929 357 L--WFTIGRLPERANSMNGWGLAFRACGDRLIVIG 389 (433)
Q Consensus 357 ~--W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~G 389 (433)
+ |+. .++... ...+.+..+++|||..
T Consensus 356 ~~~~~~--~~~~~~-----~~s~P~~~~~~l~v~t 383 (394)
T PRK11138 356 RFVAQQ--KVDSSG-----FLSEPVVADDKLLIQA 383 (394)
T ss_pred CEEEEE--EcCCCc-----ceeCCEEECCEEEEEe
Confidence 5 543 122111 1133445788888764
No 60
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.78 E-value=0.021 Score=51.72 Aligned_cols=195 Identities=15% Similarity=0.132 Sum_probs=110.8
Q ss_pred EEECCEEEEECCCCCCcccceeEEEEEcCCCc--eecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCC
Q 013929 173 LAVGTELLVFGRELTAHHISHVIYRYSILTNS--WSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSET 250 (433)
Q Consensus 173 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t 250 (433)
+..++.+|+..+ ...++.+|+.+++ |+.-. +.+-. ......++.|||... -..++.+|..+
T Consensus 33 ~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~--~~~~~-~~~~~~~~~v~v~~~-------~~~l~~~d~~t 95 (238)
T PF13360_consen 33 VPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDL--PGPIS-GAPVVDGGRVYVGTS-------DGSLYALDAKT 95 (238)
T ss_dssp EEETTEEEEEET-------TSEEEEEETTTSEEEEEEEC--SSCGG-SGEEEETTEEEEEET-------TSEEEEEETTT
T ss_pred EEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeec--ccccc-ceeeecccccccccc-------eeeeEecccCC
Confidence 336889998842 3469999998886 65432 22211 124777999988852 13789999888
Q ss_pred CC--eE-EcCCCCCC--CcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc--eEecCCCCCCCCCCCCCCcCCC
Q 013929 251 QT--WK-VLPSMKNP--RKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPA 323 (433)
Q Consensus 251 ~~--W~-~~~~~p~~--r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~ 323 (433)
+. |+ .....+.. .......+.++.+|+... ...+..+|+++++ |+.-...+.........
T Consensus 96 G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~----- 162 (238)
T PF13360_consen 96 GKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS--------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSF----- 162 (238)
T ss_dssp SCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET--------CSEEEEEETTTTEEEEEEESSTT-SS--EEEE-----
T ss_pred cceeeeeccccccccccccccCceEecCEEEEEec--------cCcEEEEecCCCcEEEEeecCCCCCCcceeee-----
Confidence 75 98 44432322 233344555777777643 2357899999875 76643332211100000
Q ss_pred CcCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc--EEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEE
Q 013929 324 SAEAPPLVAVVNNELYAADYADMEVRKYDKERRL--WFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIEL 401 (433)
Q Consensus 324 ~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~~--W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~ 401 (433)
.......+..++.+|+..+... +..+|..+++ |+.. +.... ......++.||+.. .. ..+
T Consensus 163 -~~~~~~~~~~~~~v~~~~~~g~-~~~~d~~tg~~~w~~~--~~~~~-------~~~~~~~~~l~~~~-~~------~~l 224 (238)
T PF13360_consen 163 -SDINGSPVISDGRVYVSSGDGR-VVAVDLATGEKLWSKP--ISGIY-------SLPSVDGGTLYVTS-SD------GRL 224 (238)
T ss_dssp -TTEEEEEECCTTEEEEECCTSS-EEEEETTTTEEEEEEC--SS-EC-------ECEECCCTEEEEEE-TT------TEE
T ss_pred -cccccceEEECCEEEEEcCCCe-EEEEECCCCCEEEEec--CCCcc-------CCceeeCCEEEEEe-CC------CEE
Confidence 0000123445688888865433 6666999997 7332 22211 22445678888877 21 247
Q ss_pred EEeecCCCCCCceE
Q 013929 402 NSWVPSEGPPQWNL 415 (433)
Q Consensus 402 ~~~~~~~~~~~W~~ 415 (433)
..++....+..|+.
T Consensus 225 ~~~d~~tG~~~W~~ 238 (238)
T PF13360_consen 225 YALDLKTGKVVWQQ 238 (238)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEECCCCCEEeEC
Confidence 77888766667763
No 61
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.77 E-value=0.046 Score=53.47 Aligned_cols=226 Identities=16% Similarity=0.128 Sum_probs=121.6
Q ss_pred EEEeeccceEEEEecCCC--cEEeCCCCCCccccccCCceEEEECCEEEEECCCCCCcccceeEEEEEcCCCc--eecCC
Q 013929 134 VYFSCHLLEWEAFDPIRR--RWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS--WSSGM 209 (433)
Q Consensus 134 l~~~~~~~~~~~yd~~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~ 209 (433)
+|+......+++||+.+. .|..-..-.. ..+.++.++.+|+.+. ...++.+|+.+++ |+.-.
T Consensus 68 v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~-------~~~p~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~ 133 (377)
T TIGR03300 68 VYAADADGTVVALDAETGKRLWRVDLDERL-------SGGVGADGGLVFVGTE-------KGEVIALDAEDGKELWRAKL 133 (377)
T ss_pred EEEECCCCeEEEEEccCCcEeeeecCCCCc-------ccceEEcCCEEEEEcC-------CCEEEEEECCCCcEeeeecc
Confidence 444444456888998764 4754322111 1123455778886542 2368999998875 86432
Q ss_pred CCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCC--eEEcCCCCC--CCcceeEEEECCEEEEEccccCCC
Q 013929 210 RMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKN--PRKMCSGVFMDGKFYVIGGIGGSD 285 (433)
Q Consensus 210 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~~g~lyv~GG~~~~~ 285 (433)
. .. .....+..++++|+..+ ...++.+|+.+++ |+.-...+. .+...+.++.++.+|+ |..+
T Consensus 134 ~--~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~~--- 199 (377)
T TIGR03300 134 S--SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFAG--- 199 (377)
T ss_pred C--ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECCC---
Confidence 1 11 12233456788887532 2458999998764 875433221 1223344566776654 3222
Q ss_pred CcccceEEEEECCCCc--eEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc--EEEe
Q 013929 286 SKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRL--WFTI 361 (433)
Q Consensus 286 ~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~~--W~~v 361 (433)
..+..+|+++++ |+.-...+....... .+ .....+.++.++.+|+.. ..+.+++||+++++ |+.-
T Consensus 200 ----g~v~ald~~tG~~~W~~~~~~~~g~~~~~---~~---~~~~~~p~~~~~~vy~~~-~~g~l~a~d~~tG~~~W~~~ 268 (377)
T TIGR03300 200 ----GKLVALDLQTGQPLWEQRVALPKGRTELE---RL---VDVDGDPVVDGGQVYAVS-YQGRVAALDLRSGRVLWKRD 268 (377)
T ss_pred ----CEEEEEEccCCCEeeeeccccCCCCCchh---hh---hccCCccEEECCEEEEEE-cCCEEEEEECCCCcEEEeec
Confidence 247889988764 764322221111000 00 000013455688888865 45789999998764 7653
Q ss_pred ccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecCCCCCCceE
Q 013929 362 GRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNL 415 (433)
Q Consensus 362 ~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~W~~ 415 (433)
.+. . ...+..+++||+.... ..+..++.+.....|+.
T Consensus 269 --~~~-~-------~~p~~~~~~vyv~~~~-------G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 269 --ASS-Y-------QGPAVDDNRLYVTDAD-------GVVVALDRRSGSELWKN 305 (377)
T ss_pred --cCC-c-------cCceEeCCEEEEECCC-------CeEEEEECCCCcEEEcc
Confidence 111 1 2334568888887532 23555566555556754
No 62
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.69 E-value=0.0018 Score=62.28 Aligned_cols=130 Identities=18% Similarity=0.282 Sum_probs=83.6
Q ss_pred eCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcc---cceEEEE--E-
Q 013929 223 LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKV---LTCGEEY--D- 296 (433)
Q Consensus 223 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~---~~~v~~y--d- 296 (433)
.+.+|+.++.. ..+.+||..+..-...|.++.+.....++.++++||++.......... ...++++ +
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~ 147 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRP 147 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccc
Confidence 48899988542 448899999998888888877777777788899999997654221110 0144444 4
Q ss_pred -------CCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEE-CCEEEE-EecCCCeEEEEeCCCCcEEEec--cCC
Q 013929 297 -------LETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYA-ADYADMEVRKYDKERRLWFTIG--RLP 365 (433)
Q Consensus 297 -------~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~ly~-~gg~~~~i~~yd~~~~~W~~v~--~lp 365 (433)
.....|+.+++.|......... ..-.+.+++ +..|+| +.+.....+.||+++.+|++++ .||
T Consensus 148 ~~~~~~~~~~w~W~~LP~PPf~~~~~~~~-------~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 148 PPDDPSPEESWSWRSLPPPPFVRDRRYSD-------YRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWMLP 220 (342)
T ss_pred ccccccCCCcceEEcCCCCCccccCCccc-------ceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccceecC
Confidence 2234688887655433321000 000256666 667887 4332236999999999999997 455
Q ss_pred C
Q 013929 366 E 366 (433)
Q Consensus 366 ~ 366 (433)
.
T Consensus 221 F 221 (342)
T PF07893_consen 221 F 221 (342)
T ss_pred c
Confidence 4
No 63
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.65 E-value=0.0041 Score=56.09 Aligned_cols=105 Identities=16% Similarity=0.141 Sum_probs=66.2
Q ss_pred EEEE-EccCCCCCCcCCceEEEeCCCCC--------eE---EcCCCCCCCcceeEEEE--CCE--EEEEccccCCC----
Q 013929 226 IAIL-AGGSDLEGNILSSAEMYNSETQT--------WK---VLPSMKNPRKMCSGVFM--DGK--FYVIGGIGGSD---- 285 (433)
Q Consensus 226 ~iyv-~GG~~~~~~~~~~~~~yd~~t~~--------W~---~~~~~p~~r~~~~~~~~--~g~--lyv~GG~~~~~---- 285 (433)
.-|+ .||.+.+.+....+|+....... .+ -+..+|.+|++|++-++ .|| .++|||+..-.
T Consensus 39 ~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qR 118 (337)
T PF03089_consen 39 EQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQR 118 (337)
T ss_pred eeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCcccc
Confidence 3444 58888777777888887665443 11 14688999999987654 343 67888875211
Q ss_pred --------CcccceEEEEECCCCceEe--cCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecC
Q 013929 286 --------SKVLTCGEEYDLETETWTE--IPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYA 344 (433)
Q Consensus 286 --------~~~~~~v~~yd~~t~~W~~--~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~ 344 (433)
......|+..|++-+..+. ++.+..+.+.| .+.+-++.+|++||.
T Consensus 119 TTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFH--------------vslar~D~VYilGGH 173 (337)
T PF03089_consen 119 TTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFH--------------VSLARNDCVYILGGH 173 (337)
T ss_pred chhhcceeccCCCeEEEEeccccccccccchhhcCCeEEE--------------EEEecCceEEEEccE
Confidence 0122235556666665543 34455555555 566779999999984
No 64
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.38 E-value=0.0084 Score=54.92 Aligned_cols=195 Identities=14% Similarity=0.041 Sum_probs=105.0
Q ss_pred EEEEeeccceEEEEecCCCcEEeCCCCCCccccccCCceEEEE--CCEEEEECCCCCCcccceeEEEEEcCCCceecCCC
Q 013929 133 WVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV--GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMR 210 (433)
Q Consensus 133 ~l~~~~~~~~~~~yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 210 (433)
++++......++.+|+.+..-..+.... + .+++.. ++.+|+.... ...++|+.+++++.+..
T Consensus 14 l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~-------~G~~~~~~~g~l~v~~~~--------~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 14 LYWVDIPGGRIYRVDPDTGEVEVIDLPG-P-------NGMAFDRPDGRLYVADSG--------GIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEESSS-E-------EEEEEECTTSEEEEEETT--------CEEEEETTTTEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCeEEEEecCC-C-------ceEEEEccCCEEEEEEcC--------ceEEEecCCCcEEEEee
Confidence 3344445678999999987765432221 1 122333 6888888643 35667999999987655
Q ss_pred CC-----CCcceeeEEEeCCEEEEEccCCCCCCcC--CceEEEeCCCCCeEEcCCCCCCCcceeEEEE-CC-EEEEEccc
Q 013929 211 MN-----APRCLFGSASLGEIAILAGGSDLEGNIL--SSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DG-KFYVIGGI 281 (433)
Q Consensus 211 ~p-----~~r~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g-~lyv~GG~ 281 (433)
.+ ..+..-.++.-+|.||+-.-........ ..++++++. .+.+.+..- . ....+.+.. ++ .+|+.--
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~-~~pNGi~~s~dg~~lyv~ds- 153 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-L-GFPNGIAFSPDGKTLYVADS- 153 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-E-SSEEEEEEETTSSEEEEEET-
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-c-ccccceEECCcchheeeccc-
Confidence 42 2233334444578888863322111112 569999999 555444221 1 111233333 44 5777521
Q ss_pred cCCCCcccceEEEEECCCCc--eEec---CCCCCCCCCCCCCCcCCCCcCCCCEEEE-ECCEEEEEecCCCeEEEEeCCC
Q 013929 282 GGSDSKVLTCGEEYDLETET--WTEI---PNMSPARGGAARGTEMPASAEAPPLVAV-VNNELYAADYADMEVRKYDKER 355 (433)
Q Consensus 282 ~~~~~~~~~~v~~yd~~t~~--W~~~---~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~i~~yd~~~ 355 (433)
....|++|++.... +... ..++..... +.++++ .+|+||+.....+.|++||++.
T Consensus 154 ------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~-------------pDG~~vD~~G~l~va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 154 ------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGY-------------PDGLAVDSDGNLWVADWGGGRIVVFDPDG 214 (246)
T ss_dssp ------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCE-------------EEEEEEBTTS-EEEEEETTTEEEEEETTS
T ss_pred ------ccceeEEEeccccccceeeeeeEEEcCCCCcC-------------CCcceEcCCCCEEEEEcCCCEEEEECCCc
Confidence 33458888886433 3322 122221110 113443 3789999877789999999995
Q ss_pred CcEEEeccCCCc
Q 013929 356 RLWFTIGRLPER 367 (433)
Q Consensus 356 ~~W~~v~~lp~~ 367 (433)
..-..+. +|..
T Consensus 215 ~~~~~i~-~p~~ 225 (246)
T PF08450_consen 215 KLLREIE-LPVP 225 (246)
T ss_dssp CEEEEEE--SSS
T ss_pred cEEEEEc-CCCC
Confidence 5555554 5533
No 65
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.37 E-value=0.0064 Score=58.53 Aligned_cols=120 Identities=18% Similarity=0.281 Sum_probs=81.0
Q ss_pred ECCEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCc----CCceEEE--eC
Q 013929 175 VGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNI----LSSAEMY--NS 248 (433)
Q Consensus 175 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~----~~~~~~y--d~ 248 (433)
.+++|+.++.. ....+||+.|..-...|.++.+.....++.++++||++......... ...++++ ++
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~ 147 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRP 147 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccc
Confidence 48899988654 23799999999999999988887777888889999999765332111 0144444 42
Q ss_pred --------CCCCeEEcCCCCCCCcc-------eeEEEE-CCEEEE-EccccCCCCcccceEEEEECCCCceEecCCC
Q 013929 249 --------ETQTWKVLPSMKNPRKM-------CSGVFM-DGKFYV-IGGIGGSDSKVLTCGEEYDLETETWTEIPNM 308 (433)
Q Consensus 249 --------~t~~W~~~~~~p~~r~~-------~~~~~~-~g~lyv-~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~ 308 (433)
..-.|+.+|+.|..+.. .+-+++ +..|+| +-|.. ...+.||+++.+|+++..-
T Consensus 148 ~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-------~GTysfDt~~~~W~~~GdW 217 (342)
T PF07893_consen 148 PPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-------WGTYSFDTESHEWRKHGDW 217 (342)
T ss_pred ccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-------eEEEEEEcCCcceeeccce
Confidence 22358888876655432 234455 556777 32221 2358999999999999853
No 66
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.10 E-value=0.0068 Score=54.71 Aligned_cols=105 Identities=15% Similarity=0.228 Sum_probs=73.8
Q ss_pred EEECCCCCCcccceeEEEEEcCCCce-----------ecCCCCCCCcceeeEEEe----CCEEEEEccCCCC--C-----
Q 013929 180 LVFGRELTAHHISHVIYRYSILTNSW-----------SSGMRMNAPRCLFGSASL----GEIAILAGGSDLE--G----- 237 (433)
Q Consensus 180 yv~GG~~~~~~~~~~~~~yd~~t~~W-----------~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~--~----- 237 (433)
++-||..-++..+..+|+....++.- .-+...|.+|++|++.++ +.-+++|||..-. .
T Consensus 42 lIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTe 121 (337)
T PF03089_consen 42 LIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTE 121 (337)
T ss_pred EecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchh
Confidence 34577766666777788776654331 124678999999988777 2246778985311 0
Q ss_pred ------CcCCceEEEeCCCCCeE--EcCCCCCCCcceeEEEECCEEEEEccccCC
Q 013929 238 ------NILSSAEMYNSETQTWK--VLPSMKNPRKMCSGVFMDGKFYVIGGIGGS 284 (433)
Q Consensus 238 ------~~~~~~~~yd~~t~~W~--~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~ 284 (433)
+....++..|++-+-.+ .++.+..+.+.|.+..-++.+|++||..-.
T Consensus 122 nWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~ 176 (337)
T PF03089_consen 122 NWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLE 176 (337)
T ss_pred hcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEcc
Confidence 13446788888877654 467778888888889999999999998643
No 67
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.97 E-value=0.066 Score=48.76 Aligned_cols=179 Identities=16% Similarity=0.134 Sum_probs=110.2
Q ss_pred ECCEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeE
Q 013929 175 VGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWK 254 (433)
Q Consensus 175 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 254 (433)
.++.+|.--|.. ....+..+|+.|++-....++|..-.+-+++.++++||.+-= -....++||+.+ .+
T Consensus 54 ~~g~LyESTG~y----G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW------k~~~~f~yd~~t--l~ 121 (264)
T PF05096_consen 54 DDGTLYESTGLY----GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW------KEGTGFVYDPNT--LK 121 (264)
T ss_dssp ETTEEEEEECST----TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES------SSSEEEEEETTT--TE
T ss_pred CCCEEEEeCCCC----CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe------cCCeEEEEcccc--ce
Confidence 578888876652 334689999999987766778877788899999999999821 245689999986 46
Q ss_pred EcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEe-cC----CCCCCCCCCCCCCcCCCCcCCCC
Q 013929 255 VLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTE-IP----NMSPARGGAARGTEMPASAEAPP 329 (433)
Q Consensus 255 ~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~-~~----~~p~~r~~~~~~~~~~~~~~~~~ 329 (433)
.+...+.+..+.+.+.-+..+++--|.+ .++..||++-+=.. +. ..|..+-.
T Consensus 122 ~~~~~~y~~EGWGLt~dg~~Li~SDGS~--------~L~~~dP~~f~~~~~i~V~~~g~pv~~LN--------------- 178 (264)
T PF05096_consen 122 KIGTFPYPGEGWGLTSDGKRLIMSDGSS--------RLYFLDPETFKEVRTIQVTDNGRPVSNLN--------------- 178 (264)
T ss_dssp EEEEEE-SSS--EEEECSSCEEEE-SSS--------EEEEE-TTT-SEEEEEE-EETTEE---EE---------------
T ss_pred EEEEEecCCcceEEEcCCCEEEEECCcc--------ceEEECCcccceEEEEEEEECCEECCCcE---------------
Confidence 6665566667888887777788875533 57888888643221 11 11111111
Q ss_pred EEEEECCEEEEEecCCCeEEEEeCCCCc---EEEeccCCCc------c----cCCCcccEEEEEeCCEEEEEcC
Q 013929 330 LVAVVNNELYAADYADMEVRKYDKERRL---WFTIGRLPER------A----NSMNGWGLAFRACGDRLIVIGG 390 (433)
Q Consensus 330 ~~~~~~~~ly~~gg~~~~i~~yd~~~~~---W~~v~~lp~~------~----~~~~~~~~~~~~~~~~l~v~GG 390 (433)
-.-.++|.||.==..++.|.+-||++++ |..+..+-.. + .-++ |.|...-.+++||.|=
T Consensus 179 ELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLN--GIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 179 ELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLN--GIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EE--EEEEETTTTEEEEEET
T ss_pred eEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeE--eEeEeCCCCEEEEEeC
Confidence 2445688888755567899999999996 5555433211 1 1112 2444446789999883
No 68
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.64 E-value=0.081 Score=49.14 Aligned_cols=121 Identities=17% Similarity=0.297 Sum_probs=71.5
Q ss_pred EEEEccCCCCCC-cCCceEEEeCCCCCeEEcCCCCCCCcceeEEEE-CCEEEEEccccCCCCcccceEEEEECCCCceEe
Q 013929 227 AILAGGSDLEGN-ILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTE 304 (433)
Q Consensus 227 iyv~GG~~~~~~-~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~ 304 (433)
|||-|-++..+. ....+-.||..+.+|..+..--.. .-...... ++++|+.|-..-. ......+..||.++.+|+.
T Consensus 1 v~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~-~~~~~~la~yd~~~~~w~~ 78 (281)
T PF12768_consen 1 VYVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLN-GTNSSNLATYDFKNQTWSS 78 (281)
T ss_pred CEEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEEC-CCCceeEEEEecCCCeeee
Confidence 355555655443 467899999999999987654111 12233334 6778887765522 2234567899999999998
Q ss_pred cCCCC-CCCCCCCCCCcCCCCcCCCCEEEE---ECCEEEEEec-CC--CeEEEEeCCCCcEEEecc
Q 013929 305 IPNMS-PARGGAARGTEMPASAEAPPLVAV---VNNELYAADY-AD--MEVRKYDKERRLWFTIGR 363 (433)
Q Consensus 305 ~~~~p-~~r~~~~~~~~~~~~~~~~~~~~~---~~~~ly~~gg-~~--~~i~~yd~~~~~W~~v~~ 363 (433)
++.-. ....+.. .+... -...+++.|. .. ..+..|| ..+|+.+..
T Consensus 79 ~~~~~s~~ipgpv------------~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 79 LGGGSSNSIPGPV------------TALTFISNDGSNFWVAGRSANGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred cCCcccccCCCcE------------EEEEeeccCCceEEEeceecCCCceEEEEc--CCceEeccc
Confidence 87522 1111110 01222 2346777664 22 3466664 779999875
No 69
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.37 E-value=0.22 Score=45.48 Aligned_cols=173 Identities=17% Similarity=0.105 Sum_probs=95.6
Q ss_pred CCEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcceeeEEEe--CCEEEEEccCCCCCCcCCceEEEeCCCCCe
Q 013929 176 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTW 253 (433)
Q Consensus 176 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 253 (433)
++.+|+..- ....++.+|+.+++-..+.... ..+++.. ++++|+... ....++|+.++++
T Consensus 11 ~g~l~~~D~------~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~g~~ 72 (246)
T PF08450_consen 11 DGRLYWVDI------PGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS--------GGIAVVDPDTGKV 72 (246)
T ss_dssp TTEEEEEET------TTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET--------TCEEEEETTTTEE
T ss_pred CCEEEEEEc------CCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc--------CceEEEecCCCcE
Confidence 566776642 3346899999998765432211 3344444 788888843 3456779999999
Q ss_pred EEcCCCCC-----CCcceeEEEECCEEEEEccccCC-CCcccceEEEEECCCCceEecCC-CCCCCCCCCCCCcCCCCcC
Q 013929 254 KVLPSMKN-----PRKMCSGVFMDGKFYVIGGIGGS-DSKVLTCGEEYDLETETWTEIPN-MSPARGGAARGTEMPASAE 326 (433)
Q Consensus 254 ~~~~~~p~-----~r~~~~~~~~~g~lyv~GG~~~~-~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~~~~~ 326 (433)
+.+...+. .+.+-.++--+|++|+.--.... .......++++++. ++.+.+.. +..+
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p--------------- 136 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP--------------- 136 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---------------
T ss_pred EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---------------
Confidence 88765532 12222333447888876322111 11111678999998 66555432 2111
Q ss_pred CCCEEEEE--CCEEEEEecCCCeEEEEeCCC--CcEEEe---ccCCCcccCCCcccEEEE-EeCCEEEEE
Q 013929 327 APPLVAVV--NNELYAADYADMEVRKYDKER--RLWFTI---GRLPERANSMNGWGLAFR-ACGDRLIVI 388 (433)
Q Consensus 327 ~~~~~~~~--~~~ly~~gg~~~~i~~yd~~~--~~W~~v---~~lp~~~~~~~~~~~~~~-~~~~~l~v~ 388 (433)
.+++.. ++.||+.....+.|++|++.. .++... ..++.... .--.++ -.+|+||+.
T Consensus 137 --NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g----~pDG~~vD~~G~l~va 200 (246)
T PF08450_consen 137 --NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPG----YPDGLAVDSDGNLWVA 200 (246)
T ss_dssp --EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC----EEEEEEEBTTS-EEEE
T ss_pred --cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCc----CCCcceEcCCCCEEEE
Confidence 134444 346888887888999999863 334332 22333210 002222 347899987
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=96.34 E-value=0.57 Score=47.91 Aligned_cols=45 Identities=9% Similarity=0.203 Sum_probs=39.9
Q ss_pred CCCCCCCchhHHHhhccccCcccchhhhhhcHHHHHhhcCcceee
Q 013929 78 DSLIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYR 122 (433)
Q Consensus 78 ~~~~~~LP~dl~~~iL~rlP~~~~~~~~~V~k~w~~ll~~~~~~~ 122 (433)
.-.+..||-++...||..|+.+.+...+.||+.|+.++.+...+.
T Consensus 105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 335677999999999999999999999999999999998877664
No 71
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.31 E-value=0.071 Score=49.53 Aligned_cols=110 Identities=20% Similarity=0.276 Sum_probs=68.3
Q ss_pred cceeEEEEEcCCCceecCCCCCCCcceeeEEEe-CCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCC-----CCCCCc
Q 013929 191 ISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPS-----MKNPRK 264 (433)
Q Consensus 191 ~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~-----~p~~r~ 264 (433)
.+..+-.||+.+.+|..+..--.. .-..+... +++||+.|-+...+.....+-.||..+++|..++. +|.+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 466789999999999987653111 22333434 77888888665443235678999999999988765 233332
Q ss_pred ceeEEEEC-CEEEEEccccCCCCcccceEEEEECCCCceEecCC
Q 013929 265 MCSGVFMD-GKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPN 307 (433)
Q Consensus 265 ~~~~~~~~-g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~ 307 (433)
.......+ ..+++.|... . ...-+..| .-.+|+.+..
T Consensus 93 a~~~~~~d~~~~~~aG~~~-~---g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSA-N---GSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEeceec-C---CCceEEEE--cCCceEeccc
Confidence 22222223 3566666542 2 12345666 4568998865
No 72
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0023 Score=58.41 Aligned_cols=44 Identities=7% Similarity=0.139 Sum_probs=41.4
Q ss_pred CCCCCchhHHHhhccccCcccchhhhhhcHHHHHhhcCcceeee
Q 013929 80 LIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYRL 123 (433)
Q Consensus 80 ~~~~LP~dl~~~iL~rlP~~~~~~~~~V~k~w~~ll~~~~~~~~ 123 (433)
.|-+||||+++.|++.||.+.+.++..|||||.++..+..++..
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~ 140 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT 140 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence 37789999999999999999999999999999999999998876
No 73
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.22 E-value=1.2 Score=42.58 Aligned_cols=235 Identities=10% Similarity=0.063 Sum_probs=105.0
Q ss_pred cceEEEEecCC-CcEEeCCCCCCccccccCCceEEE-E-CCEEEEECCCCCCcccceeEEEEEcC-CCceecCCCCCCCc
Q 013929 140 LLEWEAFDPIR-RRWMHLPRMTSNECFMCSDKESLA-V-GTELLVFGRELTAHHISHVIYRYSIL-TNSWSSGMRMNAPR 215 (433)
Q Consensus 140 ~~~~~~yd~~~-~~W~~l~~~p~~~~~~~~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~p~~r 215 (433)
...+..||..+ .++..+...+.... ...++. . +..+|+.+.. ...+.+|+.. +++++.+...+.+.
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~~----~~~l~~spd~~~lyv~~~~------~~~i~~~~~~~~g~l~~~~~~~~~~ 80 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPGQ----VQPMVISPDKRHLYVGVRP------EFRVLSYRIADDGALTFAAESPLPG 80 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCCC----CccEEECCCCCEEEEEECC------CCcEEEEEECCCCceEEeeeecCCC
Confidence 34577777753 56655544432211 111222 2 3456775432 2346667765 45676544333222
Q ss_pred ceeeEEEe--CCEEEEEccCCCCCCcCCceEEEeCCCCC--eEEcCCCCCCCcceeEEEE-CC-EEEEEccccCCCCccc
Q 013929 216 CLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKNPRKMCSGVFM-DG-KFYVIGGIGGSDSKVL 289 (433)
Q Consensus 216 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~-~g-~lyv~GG~~~~~~~~~ 289 (433)
....++.. +..||+..-. ...+.+||..++. .+.+...+.....|.+++. ++ .+|+.. . ..
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~-~------~~ 147 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYN------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC-L------KE 147 (330)
T ss_pred CceEEEECCCCCEEEEEEcC------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEee-C------CC
Confidence 21222222 3457776321 2456777776431 1122222222223444333 44 455543 2 22
Q ss_pred ceEEEEECCCC-ceEecC----CCCCCCCCCCCCCcCCCCcCCCCEEEEE--CCEEEEEecCCCeEEEEeCC--CCcEEE
Q 013929 290 TCGEEYDLETE-TWTEIP----NMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKE--RRLWFT 360 (433)
Q Consensus 290 ~~v~~yd~~t~-~W~~~~----~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~i~~yd~~--~~~W~~ 360 (433)
+.+.+||+.+. ...... ..+... + +..++.. +..+|+.....+.+.+||.. +++.+.
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~-~-------------p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVEGA-G-------------PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCCCC-C-------------CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence 46888998763 222110 011110 0 0123332 34678876667888888876 445544
Q ss_pred e---ccCCCcccCCCcccEEEE--EeCCEEEEEcCCCCCCCCeeEEEEeecCCCCCCceEecc
Q 013929 361 I---GRLPERANSMNGWGLAFR--ACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLAR 418 (433)
Q Consensus 361 v---~~lp~~~~~~~~~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~W~~v~~ 418 (433)
+ ..+|..... ..+...+. .-+..+|+.... ...+.+|+++.....++.+..
T Consensus 214 ~~~~~~~p~~~~~-~~~~~~i~~~pdg~~lyv~~~~------~~~I~v~~i~~~~~~~~~~~~ 269 (330)
T PRK11028 214 VQTLDMMPADFSD-TRWAADIHITPDGRHLYACDRT------ASLISVFSVSEDGSVLSFEGH 269 (330)
T ss_pred EEEEecCCCcCCC-CccceeEEECCCCCEEEEecCC------CCeEEEEEEeCCCCeEEEeEE
Confidence 3 333332111 11222222 223456765321 124556666554445554443
No 74
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.05 E-value=1.7 Score=42.88 Aligned_cols=144 Identities=10% Similarity=-0.052 Sum_probs=78.8
Q ss_pred eeEEEEEcCCCceecCCCCCCCcceeeEEEeCC-EEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEE
Q 013929 193 HVIYRYSILTNSWSSGMRMNAPRCLFGSASLGE-IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM 271 (433)
Q Consensus 193 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 271 (433)
..++++|..+++-+.+...+...... ...-++ .|++....++ ...++.+|..++..+.+......... ....-
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~-~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~~~~-~~~s~ 287 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAP-AFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGIDTE-PSWSP 287 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccce-EECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCCCCC-EEECC
Confidence 46899999988766655433222221 122244 5665533222 25789999999887777543321111 11122
Q ss_pred CCE-EEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCC---Ce
Q 013929 272 DGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD---ME 347 (433)
Q Consensus 272 ~g~-lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~---~~ 347 (433)
+|+ |++.....+ ...++.+|+.+..++.+......... ....-+++.+++.... ..
T Consensus 288 dg~~l~~~s~~~g-----~~~iy~~d~~~~~~~~l~~~~~~~~~---------------~~~spdg~~i~~~~~~~~~~~ 347 (417)
T TIGR02800 288 DGKSIAFTSDRGG-----SPQIYMMDADGGEVRRLTFRGGYNAS---------------PSWSPDGDLIAFVHREGGGFN 347 (417)
T ss_pred CCCEEEEEECCCC-----CceEEEEECCCCCEEEeecCCCCccC---------------eEECCCCCEEEEEEccCCceE
Confidence 554 444432221 23688999998888766422111111 1233355555544322 37
Q ss_pred EEEEeCCCCcEEEec
Q 013929 348 VRKYDKERRLWFTIG 362 (433)
Q Consensus 348 i~~yd~~~~~W~~v~ 362 (433)
|+.+|+.++.++.+.
T Consensus 348 i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 348 IAVMDLDGGGERVLT 362 (417)
T ss_pred EEEEeCCCCCeEEcc
Confidence 999999998777665
No 75
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.82 E-value=1.6 Score=40.48 Aligned_cols=140 Identities=12% Similarity=0.068 Sum_probs=68.8
Q ss_pred EEEEECCCCCCcccceeEEEEEcCCCceec-CCCCCCCcceeeEEE-eC-CEEEEEccCCCCCCcCCceEEEeCCCCCeE
Q 013929 178 ELLVFGRELTAHHISHVIYRYSILTNSWSS-GMRMNAPRCLFGSAS-LG-EIAILAGGSDLEGNILSSAEMYNSETQTWK 254 (433)
Q Consensus 178 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 254 (433)
.+|+.++. .+.+.+||+.+++-.. +.....++ .++. -+ ..+|+.++. ...+.+||..+.+..
T Consensus 2 ~~~~s~~~------d~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~~~ 66 (300)
T TIGR03866 2 KAYVSNEK------DNTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASD------SDTIQVIDLATGEVI 66 (300)
T ss_pred cEEEEecC------CCEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECC------CCeEEEEECCCCcEE
Confidence 35555543 2368889988776422 22111112 2222 23 357777642 245889999887654
Q ss_pred E-cCCCCCCCcceeEEE-ECC-EEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEE
Q 013929 255 V-LPSMKNPRKMCSGVF-MDG-KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLV 331 (433)
Q Consensus 255 ~-~~~~p~~r~~~~~~~-~~g-~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~ 331 (433)
. ++....+ ...+. -++ .+|+.++.+ ..+.+||+.+.+- +..++...... ...
T Consensus 67 ~~~~~~~~~---~~~~~~~~g~~l~~~~~~~-------~~l~~~d~~~~~~--~~~~~~~~~~~-------------~~~ 121 (300)
T TIGR03866 67 GTLPSGPDP---ELFALHPNGKILYIANEDD-------NLVTVIDIETRKV--LAEIPVGVEPE-------------GMA 121 (300)
T ss_pred EeccCCCCc---cEEEECCCCCEEEEEcCCC-------CeEEEEECCCCeE--EeEeeCCCCcc-------------eEE
Confidence 3 2221111 12222 234 466654322 3578899987542 21111111111 012
Q ss_pred EEECCEEEEEecCC-CeEEEEeCCCCc
Q 013929 332 AVVNNELYAADYAD-MEVRKYDKERRL 357 (433)
Q Consensus 332 ~~~~~~ly~~gg~~-~~i~~yd~~~~~ 357 (433)
..-++.+++++... ..+..||..+.+
T Consensus 122 ~~~dg~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 122 VSPDGKIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred ECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence 23466666665433 456778887654
No 76
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.63 E-value=1.3 Score=38.86 Aligned_cols=142 Identities=13% Similarity=0.062 Sum_probs=74.3
Q ss_pred EEEECCEEEEECCCCCCcccceeEEEEEcCCCce--ecC----CCCCCCcceeeEEEe-CCEEEEEccCCCCCCcCCceE
Q 013929 172 SLAVGTELLVFGRELTAHHISHVIYRYSILTNSW--SSG----MRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAE 244 (433)
Q Consensus 172 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W--~~~----~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~ 244 (433)
++...+.+|+|-|. .+|+++...... +.+ +.+|. ....+.... ++++|+|-| +..|
T Consensus 12 ~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg--------~~yw 74 (194)
T cd00094 12 VTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG--------DKYW 74 (194)
T ss_pred EEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC--------CEEE
Confidence 44456899999765 478888652211 111 22222 122222222 389999954 3467
Q ss_pred EEeCCCCCeE---EcCCCCCCC--cce-eEEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEec---------CC
Q 013929 245 MYNSETQTWK---VLPSMKNPR--KMC-SGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEI---------PN 307 (433)
Q Consensus 245 ~yd~~t~~W~---~~~~~p~~r--~~~-~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~---------~~ 307 (433)
+|+..+..+. .+.....+. ..- ++... ++++|++.|.. .++||..+++...- +.
T Consensus 75 ~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~~---------y~ry~~~~~~v~~~yP~~i~~~w~g 145 (194)
T cd00094 75 VYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGDK---------YWRYDEKTQKMDPGYPKLIETDFPG 145 (194)
T ss_pred EEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCCE---------EEEEeCCCccccCCCCcchhhcCCC
Confidence 7776542221 111111111 111 22223 68999997643 57888766543211 01
Q ss_pred CCCCCCCCCCCCcCCCCcCCCCEEEEE-CCEEEEEecCCCeEEEEeCCCCc
Q 013929 308 MSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRL 357 (433)
Q Consensus 308 ~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~gg~~~~i~~yd~~~~~ 357 (433)
+|... .++... ++++|++- ....++||..+++
T Consensus 146 ~p~~i----------------daa~~~~~~~~yfF~--g~~y~~~d~~~~~ 178 (194)
T cd00094 146 VPDKV----------------DAAFRWLDGYYYFFK--GDQYWRFDPRSKE 178 (194)
T ss_pred cCCCc----------------ceeEEeCCCcEEEEE--CCEEEEEeCccce
Confidence 11111 133334 48999994 4789999998776
No 77
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.59 E-value=0.6 Score=45.24 Aligned_cols=180 Identities=16% Similarity=0.119 Sum_probs=95.6
Q ss_pred CEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcceeeEEE--eCCE-EEEEccCCCCCCcCCceEEEeCCCCCe
Q 013929 177 TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSAS--LGEI-AILAGGSDLEGNILSSAEMYNSETQTW 253 (433)
Q Consensus 177 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W 253 (433)
-.+.+.+|.+ ..-.+|..|-.+|. .+.++...+.....+. -+|. ..+++|. ..-++.||+.+.+-
T Consensus 225 ~plllvaG~d----~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r------rky~ysyDle~ak~ 292 (514)
T KOG2055|consen 225 APLLLVAGLD----GTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR------RKYLYSYDLETAKV 292 (514)
T ss_pred CceEEEecCC----CcEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc------ceEEEEeecccccc
Confidence 4566777763 22346666777776 4444433222221111 2444 5556553 35689999999988
Q ss_pred EEcCCCCC--CCcce-eEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCE
Q 013929 254 KVLPSMKN--PRKMC-SGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPL 330 (433)
Q Consensus 254 ~~~~~~p~--~r~~~-~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~ 330 (433)
+++.++-. .+... -.+..++.+.++.|..|. |+.....|+.|-.--.++...+. .
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~-------I~lLhakT~eli~s~KieG~v~~---------------~ 350 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH-------IHLLHAKTKELITSFKIEGVVSD---------------F 350 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCce-------EEeehhhhhhhhheeeeccEEee---------------E
Confidence 87765421 11222 234456667777776632 45666777776432222222222 1
Q ss_pred EEEECC-EEEEEecCCCeEEEEeCCCCc----EEEeccCCCcccCCCcccEEEE-EeCCEEEEEcCCCCCCCCeeEEEEe
Q 013929 331 VAVVNN-ELYAADYADMEVRKYDKERRL----WFTIGRLPERANSMNGWGLAFR-ACGDRLIVIGGPKASGEGFIELNSW 404 (433)
Q Consensus 331 ~~~~~~-~ly~~gg~~~~i~~yd~~~~~----W~~v~~lp~~~~~~~~~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~ 404 (433)
....++ .|++.| ..+.||+||..++. |..-+.+ +|.++| ..++.++.+|-.. ..+++|
T Consensus 351 ~fsSdsk~l~~~~-~~GeV~v~nl~~~~~~~rf~D~G~v---------~gts~~~S~ng~ylA~GS~~------GiVNIY 414 (514)
T KOG2055|consen 351 TFSSDSKELLASG-GTGEVYVWNLRQNSCLHRFVDDGSV---------HGTSLCISLNGSYLATGSDS------GIVNIY 414 (514)
T ss_pred EEecCCcEEEEEc-CCceEEEEecCCcceEEEEeecCcc---------ceeeeeecCCCceEEeccCc------ceEEEe
Confidence 223344 455555 46699999999883 3332222 233343 4566755566321 236666
Q ss_pred ec
Q 013929 405 VP 406 (433)
Q Consensus 405 ~~ 406 (433)
+.
T Consensus 415 d~ 416 (514)
T KOG2055|consen 415 DG 416 (514)
T ss_pred cc
Confidence 65
No 78
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.32 E-value=2.4 Score=39.24 Aligned_cols=175 Identities=14% Similarity=-0.018 Sum_probs=83.4
Q ss_pred cceEEEEecCCCcEEeCCCCCCccccccCCceEE-EEC-CEEEEECCCCCCcccceeEEEEEcCCCceec-CCCCCCCcc
Q 013929 140 LLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESL-AVG-TELLVFGRELTAHHISHVIYRYSILTNSWSS-GMRMNAPRC 216 (433)
Q Consensus 140 ~~~~~~yd~~~~~W~~l~~~p~~~~~~~~~~~~~-~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~r~ 216 (433)
...+..||+.+++-...-..... ...++ ..+ ..+|+.++. .+.+.+||..+++... ++....+
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~------~~~l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~~-- 75 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQR------PRGITLSKDGKLLYVCASD------SDTIQVIDLATGEVIGTLPSGPDP-- 75 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCC------CCceEECCCCCEEEEEECC------CCeEEEEECCCCcEEEeccCCCCc--
Confidence 45677788876653222111110 01112 223 356777643 3458899998887643 3221111
Q ss_pred eeeEEE-e-CCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEE-EECCEEEEEccccCCCCcccceEE
Q 013929 217 LFGSAS-L-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV-FMDGKFYVIGGIGGSDSKVLTCGE 293 (433)
Q Consensus 217 ~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~ 293 (433)
..++. - ++.+|+.++.+ ..+.+||+.+.+- +..++.......++ .-+|++++++...+ ..+.
T Consensus 76 -~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~------~~~~ 140 (300)
T TIGR03866 76 -ELFALHPNGKILYIANEDD------NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSETT------NMAH 140 (300)
T ss_pred -cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecCC------CeEE
Confidence 12222 2 34566664322 3588899987542 22222111112233 23666766654331 2345
Q ss_pred EEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEE-EEecCCCeEEEEeCCCCcE
Q 013929 294 EYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELY-AADYADMEVRKYDKERRLW 358 (433)
Q Consensus 294 ~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly-~~gg~~~~i~~yd~~~~~W 358 (433)
.||..+.+-....... .+... .....+++.+ +.+...+.+..||.++.+.
T Consensus 141 ~~d~~~~~~~~~~~~~-~~~~~--------------~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 141 FIDTKTYEIVDNVLVD-QRPRF--------------AEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred EEeCCCCeEEEEEEcC-CCccE--------------EEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 6787765432211111 01110 1223355544 4433467899999987653
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.20 E-value=1.8 Score=42.33 Aligned_cols=248 Identities=15% Similarity=0.170 Sum_probs=119.7
Q ss_pred CCCCCchhHHHhhccccCcccchhhhhhcH---HHHHhhc------CcceeeeccccCccccEEEEeeccceEEEEecCC
Q 013929 80 LIQPIGRDNSISCLIRCSRSDYGSIASLNQ---SFRSLIR------SGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIR 150 (433)
Q Consensus 80 ~~~~LP~dl~~~iL~rlP~~~~~~~~~V~k---~w~~ll~------~~~~~~~gg~~~~~~~~l~~~~~~~~~~~yd~~~ 150 (433)
.-|.=|.|++.-+-+|+-+-+. +-+.|.| +|+..++ +|++...|...| .+.+||..+
T Consensus 34 fsp~~P~d~aVt~S~rvqly~~-~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG-------------~V~vfD~k~ 99 (487)
T KOG0310|consen 34 FSPKHPYDFAVTSSVRVQLYSS-VTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESG-------------HVKVFDMKS 99 (487)
T ss_pred cCCCCCCceEEecccEEEEEec-chhhhhhhHHhhccceeEEEeecCCeEEEccCCcC-------------cEEEecccc
Confidence 3455677877766666553222 2234444 3444444 455555555444 356788443
Q ss_pred CcE-EeC--CCCCCccccccCCceEEEECCEEEEECCCCCCcccceeEEEEEcCCCcee-cCCC-CCCCcceeeEEEeCC
Q 013929 151 RRW-MHL--PRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWS-SGMR-MNAPRCLFGSASLGE 225 (433)
Q Consensus 151 ~~W-~~l--~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~~-~p~~r~~~~~~~~~~ 225 (433)
+.- ..+ ...|....++ ...++.++++|+-. ..+..+|..+..=. .+.. --.-|+ ..+...++
T Consensus 100 r~iLR~~~ah~apv~~~~f------~~~d~t~l~s~sDd------~v~k~~d~s~a~v~~~l~~htDYVR~-g~~~~~~~ 166 (487)
T KOG0310|consen 100 RVILRQLYAHQAPVHVTKF------SPQDNTMLVSGSDD------KVVKYWDLSTAYVQAELSGHTDYVRC-GDISPAND 166 (487)
T ss_pred HHHHHHHhhccCceeEEEe------cccCCeEEEecCCC------ceEEEEEcCCcEEEEEecCCcceeEe-eccccCCC
Confidence 111 111 1112211111 22478888888642 12444555554421 1111 111122 22334477
Q ss_pred EEEEEccCCCCCCcCCceEEEeCCCC-CeEEcCCCCCCCcceeEEEE-C-CEEEEEccccCCCCcccceEEEEECCCCce
Q 013929 226 IAILAGGSDLEGNILSSAEMYNSETQ-TWKVLPSMKNPRKMCSGVFM-D-GKFYVIGGIGGSDSKVLTCGEEYDLETETW 302 (433)
Q Consensus 226 ~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~p~~r~~~~~~~~-~-g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W 302 (433)
.|++-||+++. +-.||..+. .|.. .+.....--.++.+ + +.|...||. .+-++|+.++.=
T Consensus 167 hivvtGsYDg~------vrl~DtR~~~~~v~--elnhg~pVe~vl~lpsgs~iasAgGn---------~vkVWDl~~G~q 229 (487)
T KOG0310|consen 167 HIVVTGSYDGK------VRLWDTRSLTSRVV--ELNHGCPVESVLALPSGSLIASAGGN---------SVKVWDLTTGGQ 229 (487)
T ss_pred eEEEecCCCce------EEEEEeccCCceeE--EecCCCceeeEEEcCCCCEEEEcCCC---------eEEEEEecCCce
Confidence 89999998864 677888876 4432 11111111112222 3 344444543 367788875531
Q ss_pred EecCCCCCCCCCCCCCCcCCCCcCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCcEEEeccC--CCcccCCCcccEEEE
Q 013929 303 TEIPNMSPARGGAARGTEMPASAEAPPLVAV-VNNELYAADYADMEVRKYDKERRLWFTIGRL--PERANSMNGWGLAFR 379 (433)
Q Consensus 303 ~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~i~~yd~~~~~W~~v~~l--p~~~~~~~~~~~~~~ 379 (433)
.+..+.. .+..+ .+... -++.=.+-|+-+..+-+|| +..|+.+-.+ |.+..+ . .+
T Consensus 230 -ll~~~~~---H~KtV----------TcL~l~s~~~rLlS~sLD~~VKVfd--~t~~Kvv~s~~~~~pvLs-----i-av 287 (487)
T KOG0310|consen 230 -LLTSMFN---HNKTV----------TCLRLASDSTRLLSGSLDRHVKVFD--TTNYKVVHSWKYPGPVLS-----I-AV 287 (487)
T ss_pred -ehhhhhc---ccceE----------EEEEeecCCceEeecccccceEEEE--ccceEEEEeeecccceee-----E-Ee
Confidence 1111111 11001 01222 2344455566788999999 6678877654 444421 2 22
Q ss_pred EeCCEEEEEcCCCC
Q 013929 380 ACGDRLIVIGGPKA 393 (433)
Q Consensus 380 ~~~~~l~v~GG~~~ 393 (433)
..++.-.++|+.+.
T Consensus 288 s~dd~t~viGmsnG 301 (487)
T KOG0310|consen 288 SPDDQTVVIGMSNG 301 (487)
T ss_pred cCCCceEEEecccc
Confidence 35678888887643
No 80
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.17 E-value=2.5 Score=38.64 Aligned_cols=183 Identities=13% Similarity=0.028 Sum_probs=97.9
Q ss_pred eEEEEecCCCcEEeCCCCCCccccccCCceEEEE--CCEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcceee
Q 013929 142 EWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV--GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFG 219 (433)
Q Consensus 142 ~~~~yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~ 219 (433)
.+-++|+++-.-++.+. |..+... +...+++ .+.++..|... . .-..||.++.-+..+...-.--+-.
T Consensus 125 aI~R~dpkt~evt~f~l-p~~~a~~--nlet~vfD~~G~lWFt~q~G----~---yGrLdPa~~~i~vfpaPqG~gpyGi 194 (353)
T COG4257 125 AIGRLDPKTLEVTRFPL-PLEHADA--NLETAVFDPWGNLWFTGQIG----A---YGRLDPARNVISVFPAPQGGGPYGI 194 (353)
T ss_pred eeEEecCcccceEEeec-ccccCCC--cccceeeCCCccEEEeeccc----c---ceecCcccCceeeeccCCCCCCcce
Confidence 56677777765554432 2211111 1111233 35677666321 1 1256777666544332211111223
Q ss_pred EEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCC-Ccce--eEEEECCEEEEEccccCCCCcccceEEEEE
Q 013929 220 SASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNP-RKMC--SGVFMDGKFYVIGGIGGSDSKVLTCGEEYD 296 (433)
Q Consensus 220 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-r~~~--~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd 296 (433)
++.-++.+|+.. -.-+.+-..|+.+..=+.++. |.+ .... ..+--.|++.+.- .....++.||
T Consensus 195 ~atpdGsvwyas------lagnaiaridp~~~~aev~p~-P~~~~~gsRriwsdpig~~witt-------wg~g~l~rfd 260 (353)
T COG4257 195 CATPDGSVWYAS------LAGNAIARIDPFAGHAEVVPQ-PNALKAGSRRIWSDPIGRAWITT-------WGTGSLHRFD 260 (353)
T ss_pred EECCCCcEEEEe------ccccceEEcccccCCcceecC-CCcccccccccccCccCcEEEec-------cCCceeeEeC
Confidence 445588888862 123456677877774444432 222 1111 1112345666651 1234578999
Q ss_pred CCCCceEecCC-CCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCCcEEEec
Q 013929 297 LETETWTEIPN-MSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIG 362 (433)
Q Consensus 297 ~~t~~W~~~~~-~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~~W~~v~ 362 (433)
+.+..|.+-+- -..+|... ..+--.+++++-....+.|.+||+++.+.+.+.
T Consensus 261 Ps~~sW~eypLPgs~arpys--------------~rVD~~grVW~sea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 261 PSVTSWIEYPLPGSKARPYS--------------MRVDRHGRVWLSEADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred cccccceeeeCCCCCCCcce--------------eeeccCCcEEeeccccCceeecCcccceEEEec
Confidence 99999998752 12233331 234445788876667789999999999988764
No 81
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.16 E-value=4.3 Score=41.29 Aligned_cols=206 Identities=16% Similarity=0.170 Sum_probs=101.2
Q ss_pred EEeeccceEEEEecCC--CcEEeCCCCCCccc-cccCCceEEEEC-CEEEEECCCCCCcccceeEEEEEcCCCc--eecC
Q 013929 135 YFSCHLLEWEAFDPIR--RRWMHLPRMTSNEC-FMCSDKESLAVG-TELLVFGRELTAHHISHVIYRYSILTNS--WSSG 208 (433)
Q Consensus 135 ~~~~~~~~~~~yd~~~--~~W~~l~~~p~~~~-~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~ 208 (433)
|+......++++|..+ ..|..-...+.... .......++..+ ++||+... ...++.+|..|++ |+.-
T Consensus 65 y~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 65 YFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DGRLVALDAETGKQVWKFG 137 (488)
T ss_pred EEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CCeEEEEECCCCCEeeeec
Confidence 3333345678888876 44865433221110 000112234445 78887532 2358999999875 8753
Q ss_pred CCCCC-C--cceeeEEEeCCEEEEEccCCCCC---CcCCceEEEeCCCCC--eEEcCCCC----CCCc------------
Q 013929 209 MRMNA-P--RCLFGSASLGEIAILAGGSDLEG---NILSSAEMYNSETQT--WKVLPSMK----NPRK------------ 264 (433)
Q Consensus 209 ~~~p~-~--r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~yd~~t~~--W~~~~~~p----~~r~------------ 264 (433)
...+. . ....+.++.++.+|+ |...... .....++.+|..|++ |+.-...+ .+..
T Consensus 138 ~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred CCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 32211 1 012234555677665 3222110 123578999999875 86532111 1100
Q ss_pred --ceeEEE--ECCEEEEEccccCC----------CCcccceEEEEECCCCc--eEecCCCCCC---CCCCCCCCcCCCCc
Q 013929 265 --MCSGVF--MDGKFYVIGGIGGS----------DSKVLTCGEEYDLETET--WTEIPNMSPA---RGGAARGTEMPASA 325 (433)
Q Consensus 265 --~~~~~~--~~g~lyv~GG~~~~----------~~~~~~~v~~yd~~t~~--W~~~~~~p~~---r~~~~~~~~~~~~~ 325 (433)
..+.++ .++.+|+-.+.... .....+.++.+|.++++ |+.-...+.. +...
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s---------- 286 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPN---------- 286 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCC----------
Confidence 011222 24667776442100 11233578999998875 8753221111 1110
Q ss_pred CCCCEEEE---ECCE---EEEEecCCCeEEEEeCCCCc--EEE
Q 013929 326 EAPPLVAV---VNNE---LYAADYADMEVRKYDKERRL--WFT 360 (433)
Q Consensus 326 ~~~~~~~~---~~~~---ly~~gg~~~~i~~yd~~~~~--W~~ 360 (433)
.+.+.. +++. +.+++...+.++.+|.++++ |+.
T Consensus 287 --~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 287 --QPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred --CCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 011111 2332 44455567789999999885 864
No 82
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.07 E-value=2.8 Score=38.70 Aligned_cols=168 Identities=14% Similarity=0.060 Sum_probs=93.7
Q ss_pred CceEEEECCEEEEECCCCC----------------CcccceeEEEEEcCCCc----eecCCCCCCCcceeeEEE----eC
Q 013929 169 DKESLAVGTELLVFGRELT----------------AHHISHVIYRYSILTNS----WSSGMRMNAPRCLFGSAS----LG 224 (433)
Q Consensus 169 ~~~~~~~~~~iyv~GG~~~----------------~~~~~~~~~~yd~~t~~----W~~~~~~p~~r~~~~~~~----~~ 224 (433)
..++.++++.||. ||... -...+.-+..||..+++ |++--.-+....+-..-. ++
T Consensus 39 YNAV~~vDd~IyF-GGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~ 117 (339)
T PF09910_consen 39 YNAVEWVDDFIYF-GGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYE 117 (339)
T ss_pred ceeeeeecceEEE-eeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCc
Confidence 3455667787774 44321 01234458899998886 654322222222221111 26
Q ss_pred CEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCce--
Q 013929 225 EIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETW-- 302 (433)
Q Consensus 225 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W-- 302 (433)
++|++.-+ + +....-+|..|.+++.=+.+..-|... +..+.+...|-+ . ........+++||+.+++|
T Consensus 118 D~LLlAR~-D--Gh~nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i---~-~~~~g~~~i~~~Dli~~~~~~ 187 (339)
T PF09910_consen 118 DRLLLARA-D--GHANLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI---N-NFHKGVSGIHCLDLISGKWVI 187 (339)
T ss_pred CEEEEEec-C--CcceeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec---c-ccccCCceEEEEEccCCeEEE
Confidence 67887743 1 123456888899998888877666552 333444444433 2 2234567899999999999
Q ss_pred EecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCC
Q 013929 303 TEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERR 356 (433)
Q Consensus 303 ~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~ 356 (433)
+..+.-. ...+. ... -.....++...+++|.+ ..+.+.+.||..+
T Consensus 188 e~f~~~~-s~Dg~--~~~----~~~~G~~~s~ynR~faF--~rGGi~vgnP~~~ 232 (339)
T PF09910_consen 188 ESFDVSL-SVDGG--PVI----RPELGAMASAYNRLFAF--VRGGIFVGNPYNG 232 (339)
T ss_pred Eeccccc-CCCCC--ceE----eeccccEEEEeeeEEEE--EeccEEEeCCCCC
Confidence 4443111 00000 000 00112578888999988 4567889998844
No 83
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.96 E-value=4.4 Score=40.45 Aligned_cols=145 Identities=8% Similarity=-0.122 Sum_probs=77.3
Q ss_pred eeEEEEEcCCCceecCCCCCCCcceeeEEEeCC-EEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEE
Q 013929 193 HVIYRYSILTNSWSSGMRMNAPRCLFGSASLGE-IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM 271 (433)
Q Consensus 193 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 271 (433)
..++++|+.+++.+.+...+...... ...-++ +|++....++ ..+++++|..++.-+.+...+..- ......-
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~-~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~~~~~-~~~~~sp 299 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAP-RFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDSPAID-TSPSYSP 299 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCc-EECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCCCCcc-CceeEcC
Confidence 47999999999887776544322211 222244 5544433222 357899999998877775433211 1122233
Q ss_pred CCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECC-EEEEEec--CCCeE
Q 013929 272 DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNN-ELYAADY--ADMEV 348 (433)
Q Consensus 272 ~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~-~ly~~gg--~~~~i 348 (433)
+|+-.++.... .....++++|..+...+.+.... ..... ....-+| .|++... ....+
T Consensus 300 DG~~i~f~s~~----~g~~~Iy~~d~~g~~~~~lt~~~-~~~~~--------------~~~SpdG~~ia~~~~~~~~~~i 360 (435)
T PRK05137 300 DGSQIVFESDR----SGSPQLYVMNADGSNPRRISFGG-GRYST--------------PVWSPRGDLIAFTKQGGGQFSI 360 (435)
T ss_pred CCCEEEEEECC----CCCCeEEEEECCCCCeEEeecCC-CcccC--------------eEECCCCCEEEEEEcCCCceEE
Confidence 45433333211 11246888998887777664321 11110 1222344 4444432 22478
Q ss_pred EEEeCCCCcEEEec
Q 013929 349 RKYDKERRLWFTIG 362 (433)
Q Consensus 349 ~~yd~~~~~W~~v~ 362 (433)
+.+|+.++..+.+.
T Consensus 361 ~~~d~~~~~~~~lt 374 (435)
T PRK05137 361 GVMKPDGSGERILT 374 (435)
T ss_pred EEEECCCCceEecc
Confidence 89998877766654
No 84
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.92 E-value=0.89 Score=44.09 Aligned_cols=141 Identities=13% Similarity=0.140 Sum_probs=79.4
Q ss_pred CCE-EEEECCCCCCcccceeEEEEEcCCCceecCCCCCC--Ccc--eeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCC
Q 013929 176 GTE-LLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNA--PRC--LFGSASLGEIAILAGGSDLEGNILSSAEMYNSET 250 (433)
Q Consensus 176 ~~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~--~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t 250 (433)
+|. ..+++|. ..-+|.||..+.+-.++.++-. .+. .+. ++..+.++++-|.. ..+.++...|
T Consensus 268 ~G~~~i~~s~r------rky~ysyDle~ak~~k~~~~~g~e~~~~e~Fe-VShd~~fia~~G~~------G~I~lLhakT 334 (514)
T KOG2055|consen 268 NGHSVIFTSGR------RKYLYSYDLETAKVTKLKPPYGVEEKSMERFE-VSHDSNFIAIAGNN------GHIHLLHAKT 334 (514)
T ss_pred CCceEEEeccc------ceEEEEeeccccccccccCCCCcccchhheeE-ecCCCCeEEEcccC------ceEEeehhhh
Confidence 444 5566654 3458999999999988876421 111 222 33344555665543 3366777777
Q ss_pred CCeEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc----eEecCCCCCCCCCCCCCCcCCCCcC
Q 013929 251 QTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET----WTEIPNMSPARGGAARGTEMPASAE 326 (433)
Q Consensus 251 ~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~----W~~~~~~p~~r~~~~~~~~~~~~~~ 326 (433)
+.|-.--.++......+...-+..|++.||+. .|++||+.++. |..-... .+
T Consensus 335 ~eli~s~KieG~v~~~~fsSdsk~l~~~~~~G--------eV~v~nl~~~~~~~rf~D~G~v----~g------------ 390 (514)
T KOG2055|consen 335 KELITSFKIEGVVSDFTFSSDSKELLASGGTG--------EVYVWNLRQNSCLHRFVDDGSV----HG------------ 390 (514)
T ss_pred hhhhheeeeccEEeeEEEecCCcEEEEEcCCc--------eEEEEecCCcceEEEEeecCcc----ce------------
Confidence 77643222222222222222334577777654 48999998874 3221111 11
Q ss_pred CCCEEE-EECCEEEEEecCCCeEEEEeCCC
Q 013929 327 APPLVA-VVNNELYAADYADMEVRKYDKER 355 (433)
Q Consensus 327 ~~~~~~-~~~~~ly~~gg~~~~i~~yd~~~ 355 (433)
.++| ..++.++..|...+-|-+||-.+
T Consensus 391 --ts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 391 --TSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred --eeeeecCCCceEEeccCcceEEEeccch
Confidence 1333 45777777787778888888543
No 85
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.91 E-value=3.6 Score=39.21 Aligned_cols=218 Identities=10% Similarity=0.047 Sum_probs=103.9
Q ss_pred CCEEEEECCCCCCcccceeEEEEEcCCCc-e-ecCCCCCCCcceeeEEEe--CCEEEEEccCCCCCCcCCceEEEeCCCC
Q 013929 176 GTELLVFGRELTAHHISHVIYRYSILTNS-W-SSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQ 251 (433)
Q Consensus 176 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 251 (433)
+..+|+.. + ..+.+.+||..++. . ..+...+.....|.++.. +..+||..- ....+.+||..+.
T Consensus 91 g~~l~v~~-~-----~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~~~~ 158 (330)
T PRK11028 91 GRFLFSAS-Y-----NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL------KEDRIRLFTLSDD 158 (330)
T ss_pred CCEEEEEE-c-----CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC------CCCEEEEEEECCC
Confidence 34566654 2 23467888876431 1 222222222223444333 346777632 2356899998763
Q ss_pred C-eEEcC----CCCCCCcceeEEEE-C-CEEEEEccccCCCCcccceEEEEECC--CCceEec---CCCCCCCCCCCCCC
Q 013929 252 T-WKVLP----SMKNPRKMCSGVFM-D-GKFYVIGGIGGSDSKVLTCGEEYDLE--TETWTEI---PNMSPARGGAARGT 319 (433)
Q Consensus 252 ~-W~~~~----~~p~~r~~~~~~~~-~-g~lyv~GG~~~~~~~~~~~v~~yd~~--t~~W~~~---~~~p~~r~~~~~~~ 319 (433)
. ..... ..+....-+.++.. + ..+|+.-.. .+.+.+||.. +++.+.+ ..+|....+.
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-------~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~---- 227 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-------NSSVDVWQLKDPHGEIECVQTLDMMPADFSDT---- 227 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-------CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC----
Confidence 2 22110 11111112223332 3 356776321 2456667665 4455443 2233211110
Q ss_pred cCCCCcCCCCEEEE-EC-CEEEEEecCCCeEEEEeCC--CCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCC
Q 013929 320 EMPASAEAPPLVAV-VN-NELYAADYADMEVRKYDKE--RRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASG 395 (433)
Q Consensus 320 ~~~~~~~~~~~~~~-~~-~~ly~~gg~~~~i~~yd~~--~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~ 395 (433)
.++..+.. -+ ..+|+.....+.|.+|+.. +..++.+...+.... . .+..+..-+..||+.+...
T Consensus 228 ------~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~-p--~~~~~~~dg~~l~va~~~~--- 295 (330)
T PRK11028 228 ------RWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQ-P--RGFNIDHSGKYLIAAGQKS--- 295 (330)
T ss_pred ------ccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecccc-C--CceEECCCCCEEEEEEccC---
Confidence 00111222 23 4577765556778777764 445665554432211 0 1233333455777765321
Q ss_pred CCeeEEEEeecCCCCCCceEecccCCCcEEEEEEEe
Q 013929 396 EGFIELNSWVPSEGPPQWNLLARKQSANFVYNCAVM 431 (433)
Q Consensus 396 ~~~~~~~~~~~~~~~~~W~~v~~~p~~~~~~~~~v~ 431 (433)
..+.+|..+..+..++.+...+.+..-.+.+++
T Consensus 296 ---~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~~ 328 (330)
T PRK11028 296 ---HHISVYEIDGETGLLTELGRYAVGQGPMWVSVL 328 (330)
T ss_pred ---CcEEEEEEcCCCCcEEEccccccCCCceEEEEE
Confidence 246777777667778888777666655555543
No 86
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.89 E-value=4.8 Score=40.44 Aligned_cols=145 Identities=10% Similarity=-0.005 Sum_probs=79.8
Q ss_pred eeEEEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEEC
Q 013929 193 HVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMD 272 (433)
Q Consensus 193 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 272 (433)
..+|++|..+++-+.+...+.....+...--+.+|++....++ ...++++|..++..+.+......- ......-+
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~~~-~~p~wSpD 316 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRAID-TEPSWHPD 316 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCCCc-cceEECCC
Confidence 4699999998887666554322111111112345655543222 357999999999888776432111 11122235
Q ss_pred CE-EEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECC-EEEEEecC--CCeE
Q 013929 273 GK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNN-ELYAADYA--DMEV 348 (433)
Q Consensus 273 g~-lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~-~ly~~gg~--~~~i 348 (433)
|+ |++..... ....++.+|+.+++++.+.... ..... ....-+| .|++.... ...|
T Consensus 317 G~~I~f~s~~~-----g~~~Iy~~dl~~g~~~~Lt~~g-~~~~~--------------~~~SpDG~~l~~~~~~~g~~~I 376 (448)
T PRK04792 317 GKSLIFTSERG-----GKPQIYRVNLASGKVSRLTFEG-EQNLG--------------GSITPDGRSMIMVNRTNGKFNI 376 (448)
T ss_pred CCEEEEEECCC-----CCceEEEEECCCCCEEEEecCC-CCCcC--------------eeECCCCCEEEEEEecCCceEE
Confidence 54 44443222 1246899999999988774211 11110 1223344 55554422 2478
Q ss_pred EEEeCCCCcEEEec
Q 013929 349 RKYDKERRLWFTIG 362 (433)
Q Consensus 349 ~~yd~~~~~W~~v~ 362 (433)
+.+|+.++..+.+.
T Consensus 377 ~~~dl~~g~~~~lt 390 (448)
T PRK04792 377 ARQDLETGAMQVLT 390 (448)
T ss_pred EEEECCCCCeEEcc
Confidence 89999999887765
No 87
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.81 E-value=4.8 Score=40.08 Aligned_cols=145 Identities=8% Similarity=-0.054 Sum_probs=79.3
Q ss_pred eeEEEEEcCCCceecCCCCCCCcceeeEEEeCC-EEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEE
Q 013929 193 HVIYRYSILTNSWSSGMRMNAPRCLFGSASLGE-IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM 271 (433)
Q Consensus 193 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 271 (433)
..++++|..+++-+.+...+..-.. ....-++ +|++....++ ..+++++|..++..+.+...+..-.. ....-
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~-~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~~~~-~~~sp 296 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGA-PAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNHPAIDTE-PFWGK 296 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCC-eEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccCCCCcCC-eEECC
Confidence 3689999999887776544321111 1122244 5554432221 25799999999988877643221111 11223
Q ss_pred CC-EEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEE-CCEEEEEecC--CCe
Q 013929 272 DG-KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYA--DME 347 (433)
Q Consensus 272 ~g-~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~gg~--~~~ 347 (433)
+| .|++..... ....++.+|+.++.++.+.... ..... ....- ++.|++.... ...
T Consensus 297 Dg~~i~f~s~~~-----g~~~iy~~d~~~g~~~~lt~~~-~~~~~--------------~~~Spdg~~i~~~~~~~~~~~ 356 (430)
T PRK00178 297 DGRTLYFTSDRG-----GKPQIYKVNVNGGRAERVTFVG-NYNAR--------------PRLSADGKTLVMVHRQDGNFH 356 (430)
T ss_pred CCCEEEEEECCC-----CCceEEEEECCCCCEEEeecCC-CCccc--------------eEECCCCCEEEEEEccCCceE
Confidence 44 455543222 1246888999998887764211 11110 12222 3455554322 236
Q ss_pred EEEEeCCCCcEEEecc
Q 013929 348 VRKYDKERRLWFTIGR 363 (433)
Q Consensus 348 i~~yd~~~~~W~~v~~ 363 (433)
++.+|..++..+.+..
T Consensus 357 l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 357 VAAQDLQRGSVRILTD 372 (430)
T ss_pred EEEEECCCCCEEEccC
Confidence 8999999998887764
No 88
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.78 E-value=4.2 Score=39.24 Aligned_cols=240 Identities=15% Similarity=0.082 Sum_probs=116.1
Q ss_pred EEEEecCCCcEEeCCCCCCccccccCCceEEE--ECCEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcceeeE
Q 013929 143 WEAFDPIRRRWMHLPRMTSNECFMCSDKESLA--VGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGS 220 (433)
Q Consensus 143 ~~~yd~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 220 (433)
.+.||..+.++..+........ ...++. -+..||+..... .....-..+..++.+++.+.+...+.....++.
T Consensus 17 ~~~~d~~~g~l~~~~~~~~~~~----Ps~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVAEGEN----PSWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp EEEEETTTTEEEEEEEEEESSS----ECCEEE-TTSSEEEEEETTS-STTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred EEEEcCCCCCceEeeeecCCCC----CceEEEEeCCCEEEEEEccc-cCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 4457888888876653221110 011222 256888886432 011111234455555788777655533333333
Q ss_pred EEe---CCEEEEEccCCCCCCcCCceEEEeCCCCC-eEEc---------CCCC---CCCcceeEEEE-CC-EEEEEcccc
Q 013929 221 ASL---GEIAILAGGSDLEGNILSSAEMYNSETQT-WKVL---------PSMK---NPRKMCSGVFM-DG-KFYVIGGIG 282 (433)
Q Consensus 221 ~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~---------~~~p---~~r~~~~~~~~-~g-~lyv~GG~~ 282 (433)
..+ +..||+.-- ....+.+|+...+- =... .+-+ ..-..|.+... +| .+|+.-
T Consensus 92 i~~~~~g~~l~vany------~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d--- 162 (345)
T PF10282_consen 92 IAVDPDGRFLYVANY------GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD--- 162 (345)
T ss_dssp EEECTTSSEEEEEET------TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE---
T ss_pred EEEecCCCEEEEEEc------cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe---
Confidence 333 456777621 13456777776632 1111 0111 11122444443 33 466652
Q ss_pred CCCCcccceEEEEECCCCc--eEecCCCCCCCCCCCCCCcCCCCcCCCC-EEEEE--CCEEEEEecCCCeEEEEeCC--C
Q 013929 283 GSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPP-LVAVV--NNELYAADYADMEVRKYDKE--R 355 (433)
Q Consensus 283 ~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~-~~~~~--~~~ly~~gg~~~~i~~yd~~--~ 355 (433)
...+.|++|+..... .........+... ++ .++.. +..+|++....+.|.+|+.. +
T Consensus 163 ----lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~-------------GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~ 225 (345)
T PF10282_consen 163 ----LGADRVYVYDIDDDTGKLTPVDSIKVPPGS-------------GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD 225 (345)
T ss_dssp ----TTTTEEEEEEE-TTS-TEEEEEEEECSTTS-------------SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ----cCCCEEEEEEEeCCCceEEEeeccccccCC-------------CCcEEEEcCCcCEEEEecCCCCcEEEEeecccC
Confidence 123467888776655 5553322111111 01 23333 35899998878888877666 6
Q ss_pred CcEEEec---cCCCcccCCCcccEEEEEe--CCEEEEEcCCCCCCCCeeEEEEeecCCCCCCceEecccC
Q 013929 356 RLWFTIG---RLPERANSMNGWGLAFRAC--GDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQ 420 (433)
Q Consensus 356 ~~W~~v~---~lp~~~~~~~~~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~W~~v~~~p 420 (433)
+.++.+. .+|....... ....++.. +..||+.... ...+-++..+..+.+.+.+...|
T Consensus 226 g~~~~~~~~~~~~~~~~~~~-~~~~i~ispdg~~lyvsnr~------~~sI~vf~~d~~~g~l~~~~~~~ 288 (345)
T PF10282_consen 226 GSLTEIQTISTLPEGFTGEN-APAEIAISPDGRFLYVSNRG------SNSISVFDLDPATGTLTLVQTVP 288 (345)
T ss_dssp TEEEEEEEEESCETTSCSSS-SEEEEEE-TTSSEEEEEECT------TTEEEEEEECTTTTTEEEEEEEE
T ss_pred CceeEEEEeeeccccccccC-CceeEEEecCCCEEEEEecc------CCEEEEEEEecCCCceEEEEEEe
Confidence 6776654 4444221111 22444443 4567876533 12456667655555555555444
No 89
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.67 E-value=3.1 Score=37.32 Aligned_cols=133 Identities=15% Similarity=0.122 Sum_probs=62.0
Q ss_pred eeEEEEEcCCCcee-cCCCCCCCcceeeEEEe-CCEEEEEccCCCCCCcCCceEEEeCCCCCeEE-cCCCCCCCcceeEE
Q 013929 193 HVIYRYSILTNSWS-SGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKV-LPSMKNPRKMCSGV 269 (433)
Q Consensus 193 ~~~~~yd~~t~~W~-~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~r~~~~~~ 269 (433)
..+.+||..+++.. .+.. ......++... ++.+++.|+.+ ..+.+||+.+..-.. +... ...-....
T Consensus 73 ~~i~i~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~--~~~i~~~~ 142 (289)
T cd00200 73 KTIRLWDLETGECVRTLTG--HTSYVSSVAFSPDGRILSSSSRD------KTIKVWDVETGKCLTTLRGH--TDWVNSVA 142 (289)
T ss_pred CeEEEEEcCcccceEEEec--cCCcEEEEEEcCCCCEEEEecCC------CeEEEEECCCcEEEEEeccC--CCcEEEEE
Confidence 45888998875322 1111 11111222222 34566665522 458889988543222 2211 11112223
Q ss_pred EEC-CEEEEEccccCCCCcccceEEEEECCCCce-EecCCCCCCCCCCCCCCcCCCCcCCCCEEEE-ECCEEEEEecCCC
Q 013929 270 FMD-GKFYVIGGIGGSDSKVLTCGEEYDLETETW-TEIPNMSPARGGAARGTEMPASAEAPPLVAV-VNNELYAADYADM 346 (433)
Q Consensus 270 ~~~-g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~ 346 (433)
... +.+++.|..+ ..+.+||+.+.+- ..+. ...... ..+.. -++..+++++..+
T Consensus 143 ~~~~~~~l~~~~~~-------~~i~i~d~~~~~~~~~~~---~~~~~i-------------~~~~~~~~~~~l~~~~~~~ 199 (289)
T cd00200 143 FSPDGTFVASSSQD-------GTIKLWDLRTGKCVATLT---GHTGEV-------------NSVAFSPDGEKLLSSSSDG 199 (289)
T ss_pred EcCcCCEEEEEcCC-------CcEEEEEccccccceeEe---cCcccc-------------ceEEECCCcCEEEEecCCC
Confidence 333 4444444323 2467888875431 1111 111010 12332 2444566666688
Q ss_pred eEEEEeCCCCcE
Q 013929 347 EVRKYDKERRLW 358 (433)
Q Consensus 347 ~i~~yd~~~~~W 358 (433)
.+..||..+.+-
T Consensus 200 ~i~i~d~~~~~~ 211 (289)
T cd00200 200 TIKLWDLSTGKC 211 (289)
T ss_pred cEEEEECCCCce
Confidence 999999887543
No 90
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.42 E-value=0.53 Score=43.02 Aligned_cols=107 Identities=16% Similarity=-0.027 Sum_probs=72.4
Q ss_pred eCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCce
Q 013929 223 LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETW 302 (433)
Q Consensus 223 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W 302 (433)
.++.+|.--|..+ .+.+..||+.+++-....++|..-++=+.+.++++||..-=. .....+||+.+ .
T Consensus 54 ~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk-------~~~~f~yd~~t--l 120 (264)
T PF05096_consen 54 DDGTLYESTGLYG----QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK-------EGTGFVYDPNT--L 120 (264)
T ss_dssp ETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS-------SSEEEEEETTT--T
T ss_pred CCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec-------CCeEEEEcccc--c
Confidence 5788988877554 367899999999877666777766777889999999999432 24568899976 4
Q ss_pred EecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc
Q 013929 303 TEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRL 357 (433)
Q Consensus 303 ~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~~ 357 (433)
+.+...+.+..+. +++..+..|++-.| +..++..||++-+
T Consensus 121 ~~~~~~~y~~EGW--------------GLt~dg~~Li~SDG-S~~L~~~dP~~f~ 160 (264)
T PF05096_consen 121 KKIGTFPYPGEGW--------------GLTSDGKRLIMSDG-SSRLYFLDPETFK 160 (264)
T ss_dssp EEEEEEE-SSS----------------EEEECSSCEEEE-S-SSEEEEE-TTT-S
T ss_pred eEEEEEecCCcce--------------EEEcCCCEEEEECC-ccceEEECCcccc
Confidence 5554444444554 67766777777776 6789999998643
No 91
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.37 E-value=7.1 Score=40.12 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=68.4
Q ss_pred EEECCEEEEECCCCCCcccceeEEEEEcCCCc--eecCCCCCCC--------cceeeEEEeCCEEEEEccCCCCCCcCCc
Q 013929 173 LAVGTELLVFGRELTAHHISHVIYRYSILTNS--WSSGMRMNAP--------RCLFGSASLGEIAILAGGSDLEGNILSS 242 (433)
Q Consensus 173 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 242 (433)
++.++.||+.... ..++.+|..|++ |+.-...+.. ......++.+++||+.. .-..
T Consensus 66 vv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-------~dg~ 131 (527)
T TIGR03075 66 LVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-------LDAR 131 (527)
T ss_pred EEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-------CCCE
Confidence 6679999997532 258999999874 8754332211 11123466788888752 1246
Q ss_pred eEEEeCCCCC--eEEcC-CCCCC-CcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc--eEe
Q 013929 243 AEMYNSETQT--WKVLP-SMKNP-RKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET--WTE 304 (433)
Q Consensus 243 ~~~yd~~t~~--W~~~~-~~p~~-r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~--W~~ 304 (433)
++.+|.+|++ |+.-. ..... ....+-++.+++||+-.... .......+..||.+|++ |+.
T Consensus 132 l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~--~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGG--EFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeeccc--ccCCCcEEEEEECCCCceeEec
Confidence 8999999876 86532 22111 11223456788887753211 11123467889999875 764
No 92
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.18 E-value=2.4 Score=40.88 Aligned_cols=195 Identities=14% Similarity=0.098 Sum_probs=93.0
Q ss_pred eEEEEEcCCCceecCCCCCCCcceeeEEE--eCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEE
Q 013929 194 VIYRYSILTNSWSSGMRMNAPRCLFGSAS--LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM 271 (433)
Q Consensus 194 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 271 (433)
.++.||..+++++.+......-...-++. -++.||+....... ...-..+..+..+.+.+.+...+......+.+.+
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~-~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~ 94 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGD-SGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAV 94 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSST-TTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEE
T ss_pred EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccC-CCCEEEEEECCCcceeEEeeeeccCCCCcEEEEE
Confidence 35667889999986654221111111222 36689998554311 1122344455555678777665533333233333
Q ss_pred --CC-EEEEEccccCCCCcccceEEEEECCCC-ceEecC-------CCCCC-CCCCCCCCcCCCCcCCCCEEEEE--CCE
Q 013929 272 --DG-KFYVIGGIGGSDSKVLTCGEEYDLETE-TWTEIP-------NMSPA-RGGAARGTEMPASAEAPPLVAVV--NNE 337 (433)
Q Consensus 272 --~g-~lyv~GG~~~~~~~~~~~v~~yd~~t~-~W~~~~-------~~p~~-r~~~~~~~~~~~~~~~~~~~~~~--~~~ 337 (433)
++ .+|+. -+. ...+.+|++..+ .-.... .-|.+ |... .++..+... ++.
T Consensus 95 ~~~g~~l~va-ny~------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~----------~h~H~v~~~pdg~~ 157 (345)
T PF10282_consen 95 DPDGRFLYVA-NYG------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEG----------PHPHQVVFSPDGRF 157 (345)
T ss_dssp CTTSSEEEEE-ETT------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSS----------TCEEEEEE-TTSSE
T ss_pred ecCCCEEEEE-Ecc------CCeEEEEEccCCcccceeeeecccCCCCCccccccc----------ccceeEEECCCCCE
Confidence 34 45554 222 234677777663 222221 01111 1110 011123333 356
Q ss_pred EEEEecCCCeEEEEeCCCCc--EEEecc--CCCcccCCCcccEEEEE-eCCEEEEEcCCCCCCCCeeEEEEeecCCCCCC
Q 013929 338 LYAADYADMEVRKYDKERRL--WFTIGR--LPERANSMNGWGLAFRA-CGDRLIVIGGPKASGEGFIELNSWVPSEGPPQ 412 (433)
Q Consensus 338 ly~~gg~~~~i~~yd~~~~~--W~~v~~--lp~~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~ 412 (433)
+|+..-....|++|+..... ...... +|.... ..+.+.. -+..+||+.-.. ..+.++.++.....
T Consensus 158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G----PRh~~f~pdg~~~Yv~~e~s------~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG----PRHLAFSPDGKYAYVVNELS------NTVSVFDYDPSDGS 227 (345)
T ss_dssp EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS----EEEEEE-TTSSEEEEEETTT------TEEEEEEEETTTTE
T ss_pred EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC----CcEEEEcCCcCEEEEecCCC------CcEEEEeecccCCc
Confidence 88876556789999887665 655432 232211 1133333 345788987542 24556666544445
Q ss_pred ceEe
Q 013929 413 WNLL 416 (433)
Q Consensus 413 W~~v 416 (433)
++.+
T Consensus 228 ~~~~ 231 (345)
T PF10282_consen 228 LTEI 231 (345)
T ss_dssp EEEE
T ss_pred eeEE
Confidence 5544
No 93
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.16 E-value=6.7 Score=39.86 Aligned_cols=116 Identities=17% Similarity=0.146 Sum_probs=65.7
Q ss_pred eEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCC--eEEcCCCCCCC-----cceeEEEEC-CEEEEEccccCCCCcccc
Q 013929 219 GSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKNPR-----KMCSGVFMD-GKFYVIGGIGGSDSKVLT 290 (433)
Q Consensus 219 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r-----~~~~~~~~~-g~lyv~GG~~~~~~~~~~ 290 (433)
+.++.+++||+... ...++.+|..+++ |+.-...+..+ .....++.+ +++|+... + .
T Consensus 56 sPvv~~g~vy~~~~-------~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-~-------g 120 (488)
T cd00216 56 TPLVVDGDMYFTTS-------HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-D-------G 120 (488)
T ss_pred CCEEECCEEEEeCC-------CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-C-------C
Confidence 34577999998743 2568899998765 87643222111 112234556 78887532 1 3
Q ss_pred eEEEEECCCCc--eEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEe--------cCCCeEEEEeCCCC--cE
Q 013929 291 CGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAAD--------YADMEVRKYDKERR--LW 358 (433)
Q Consensus 291 ~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~g--------g~~~~i~~yd~~~~--~W 358 (433)
.++.+|.+|++ |+.-.......... ...+.++.++.+|+-. +..+.++.+|.+++ .|
T Consensus 121 ~v~AlD~~TG~~~W~~~~~~~~~~~~~-----------i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 121 RLVALDAETGKQVWKFGNNDQVPPGYT-----------MTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred eEEEEECCCCCEeeeecCCCCcCcceE-----------ecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 57889988764 77543221100000 0013456677766532 23468999999887 48
Q ss_pred EE
Q 013929 359 FT 360 (433)
Q Consensus 359 ~~ 360 (433)
+.
T Consensus 190 ~~ 191 (488)
T cd00216 190 RF 191 (488)
T ss_pred Ee
Confidence 65
No 94
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.13 E-value=7.9 Score=39.75 Aligned_cols=208 Identities=11% Similarity=0.057 Sum_probs=107.5
Q ss_pred EEEEeeccceEEEEecCC--CcEEeCCCCCCccc----cccCCceEEEECCEEEEECCCCCCcccceeEEEEEcCCCc--
Q 013929 133 WVYFSCHLLEWEAFDPIR--RRWMHLPRMTSNEC----FMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS-- 204 (433)
Q Consensus 133 ~l~~~~~~~~~~~yd~~~--~~W~~l~~~p~~~~----~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-- 204 (433)
.+|+......++++|..+ ..|+.-...+.... .....+.++..+++||+... ...++.+|..|++
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLVALDAKTGKVV 143 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEEEEECCCCCEE
Confidence 455554556688888876 45765443322110 00012345666888887532 2358999999886
Q ss_pred eecC-CCCCCC-cceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCC--eEEc--CCCCC-----------------
Q 013929 205 WSSG-MRMNAP-RCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVL--PSMKN----------------- 261 (433)
Q Consensus 205 W~~~-~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~--~~~p~----------------- 261 (433)
|+.- ...... ....+-++.+++||+-....+. .....+..||.++++ |+.- +.-+.
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~-~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t 222 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEF-GVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT 222 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeeccccc-CCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence 7643 222111 1122345668888775322111 124568899999875 7642 22110
Q ss_pred ------CCcc---eeEEEE---CCEEEEEccc----cCC----CCcccceEEEEECCCCc--eEecCCCCCCCCCCCCCC
Q 013929 262 ------PRKM---CSGVFM---DGKFYVIGGI----GGS----DSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGT 319 (433)
Q Consensus 262 ------~r~~---~~~~~~---~g~lyv~GG~----~~~----~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~ 319 (433)
.+.+ .....+ .+.||+--|. .+. ...+.+++...|++|++ |..-...........
T Consensus 223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~--- 299 (527)
T TIGR03075 223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDG--- 299 (527)
T ss_pred CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccC---
Confidence 0101 011233 3567776553 211 12456789999999986 654221111111100
Q ss_pred cCCCCcCCCCEEEE--ECCE---EEEEecCCCeEEEEeCCCCc
Q 013929 320 EMPASAEAPPLVAV--VNNE---LYAADYADMEVRKYDKERRL 357 (433)
Q Consensus 320 ~~~~~~~~~~~~~~--~~~~---ly~~gg~~~~i~~yd~~~~~ 357 (433)
...+..+. .+|+ +++.+...+.++++|..+++
T Consensus 300 ------~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 300 ------VNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred ------CCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 00112333 3554 66677677788888887764
No 95
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.97 E-value=4.4 Score=37.06 Aligned_cols=180 Identities=15% Similarity=0.118 Sum_probs=102.6
Q ss_pred CCEEEEECCCCCCcccceeEEEEEc-----CCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCC
Q 013929 176 GTELLVFGRELTAHHISHVIYRYSI-----LTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSET 250 (433)
Q Consensus 176 ~~~iyv~GG~~~~~~~~~~~~~yd~-----~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t 250 (433)
.+++|++.+... +.++.|.- ..++..+.-.||.+-.+.+.++++|.+|.-- .....+.+||+.+
T Consensus 30 ~~~iy~~~~~~~-----~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~------~~s~~IvkydL~t 98 (250)
T PF02191_consen 30 SEKIYVTSGFSG-----NTVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNK------YNSRNIVKYDLTT 98 (250)
T ss_pred CCCEEEECccCC-----CEEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEe------cCCceEEEEECcC
Confidence 567888887632 24555533 2333444445677777888889999998862 2367899999999
Q ss_pred CCeE---EcCCCCCC------C---cceeEEEECCEEEEEccccCCCCcccceEEEEECCC----CceEecCCCCCCCCC
Q 013929 251 QTWK---VLPSMKNP------R---KMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLET----ETWTEIPNMSPARGG 314 (433)
Q Consensus 251 ~~W~---~~~~~p~~------r---~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t----~~W~~~~~~p~~r~~ 314 (433)
++=. .++..... . ...-.++-..-|+++-......+ .-.+-..|+.+ .+|.. ..+....+
T Consensus 99 ~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g--~ivvskld~~tL~v~~tw~T--~~~k~~~~ 174 (250)
T PF02191_consen 99 RSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG--NIVVSKLDPETLSVEQTWNT--SYPKRSAG 174 (250)
T ss_pred CcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC--cEEEEeeCcccCceEEEEEe--ccCchhhc
Confidence 8744 45422111 1 11233455556666644332211 12234456654 35653 34444344
Q ss_pred CCCCCcCCCCcCCCCEEEEECCEEEEEecCC----CeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEe---CCEEEE
Q 013929 315 AARGTEMPASAEAPPLVAVVNNELYAADYAD----MEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRAC---GDRLIV 387 (433)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~----~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~---~~~l~v 387 (433)
.+.++-|.||++.... .-.+.||+.+++=..+. ++...... ..+...+ +.+||+
T Consensus 175 ---------------naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~-i~f~~~~~---~~~~l~YNP~dk~LY~ 235 (250)
T PF02191_consen 175 ---------------NAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVS-IPFPNPYG---NISMLSYNPRDKKLYA 235 (250)
T ss_pred ---------------ceeeEeeEEEEEEECCCCCcEEEEEEECCCCceecee-eeeccccC---ceEeeeECCCCCeEEE
Confidence 3677789999997533 34578999988765443 33322211 1334443 568887
Q ss_pred Ec
Q 013929 388 IG 389 (433)
Q Consensus 388 ~G 389 (433)
.-
T Consensus 236 wd 237 (250)
T PF02191_consen 236 WD 237 (250)
T ss_pred EE
Confidence 65
No 96
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=93.87 E-value=1.7 Score=35.30 Aligned_cols=83 Identities=16% Similarity=0.247 Sum_probs=55.6
Q ss_pred EEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCC--CCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCC-
Q 013929 269 VFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNM--SPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD- 345 (433)
Q Consensus 269 ~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~--p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~- 345 (433)
+.+||.+|..+-.. ......|.+||..+++|+.++.+ +.... .....+.++|+|-++....
T Consensus 2 icinGvly~~a~~~---~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~-------------~~~~L~~~~G~L~~v~~~~~ 65 (129)
T PF08268_consen 2 ICINGVLYWLAWSE---DSDNNVIVSFDVRSEKFRFIKLPEDPYSSD-------------CSSTLIEYKGKLALVSYNDQ 65 (129)
T ss_pred EEECcEEEeEEEEC---CCCCcEEEEEEcCCceEEEEEeeeeecccc-------------CccEEEEeCCeEEEEEecCC
Confidence 46789999887652 22456789999999999988643 11111 1136889999999986422
Q ss_pred -----CeEEEE-eCCCCcEEEec-cCCCc
Q 013929 346 -----MEVRKY-DKERRLWFTIG-RLPER 367 (433)
Q Consensus 346 -----~~i~~y-d~~~~~W~~v~-~lp~~ 367 (433)
-++|+. |.++.+|.+.. .+|..
T Consensus 66 ~~~~~~~iWvLeD~~k~~Wsk~~~~lp~~ 94 (129)
T PF08268_consen 66 GEPDSIDIWVLEDYEKQEWSKKHIVLPPS 94 (129)
T ss_pred CCcceEEEEEeeccccceEEEEEEECChH
Confidence 366766 56678998774 34443
No 97
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.53 E-value=3.6 Score=36.91 Aligned_cols=55 Identities=22% Similarity=0.570 Sum_probs=34.1
Q ss_pred eCCCCcEEEe--ccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecCCCCCCceEeccc
Q 013929 352 DKERRLWFTI--GRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARK 419 (433)
Q Consensus 352 d~~~~~W~~v--~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~W~~v~~~ 419 (433)
+.+.+.|+.- .+.|... |..+....++-|-|-||-+ .+.+|..+. ..+|.+++..
T Consensus 241 ~~e~e~wk~tll~~f~~~~-----w~vSWS~sGn~LaVs~GdN-------kvtlwke~~-~Gkw~~v~~~ 297 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVV-----WRVSWSLSGNILAVSGGDN-------KVTLWKENV-DGKWEEVGEV 297 (299)
T ss_pred cCccCcccccccccCCcce-----EEEEEeccccEEEEecCCc-------EEEEEEeCC-CCcEEEcccc
Confidence 4456788653 3555544 4466655666666767652 367787763 5689998653
No 98
>smart00284 OLF Olfactomedin-like domains.
Probab=93.36 E-value=6.2 Score=36.04 Aligned_cols=182 Identities=10% Similarity=0.039 Sum_probs=98.4
Q ss_pred CCEEEEECCCCCCcccceeEEEEEcC----CCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCC
Q 013929 176 GTELLVFGRELTAHHISHVIYRYSIL----TNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQ 251 (433)
Q Consensus 176 ~~~iyv~GG~~~~~~~~~~~~~yd~~----t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 251 (433)
++++|++.+.. ...+.++.|.-. .+++.+.-.+|.+-.+-+.++++|.+|.-- .....+..||+.+.
T Consensus 34 ~~~~wv~~~~~---~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~------~~s~~iiKydL~t~ 104 (255)
T smart00284 34 KSLYWYMPLNT---RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNK------FNSHDICRFDLTTE 104 (255)
T ss_pred CceEEEEcccc---CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEe------cCCccEEEEECCCC
Confidence 46788886542 122345555432 344444445777888889999999999863 23467999999998
Q ss_pred CeEEcCCCCCC----Cc--------ceeEEEECCEEEEEccccCCCCcccceEEEEECCC----CceEecCCCCCCCCCC
Q 013929 252 TWKVLPSMKNP----RK--------MCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLET----ETWTEIPNMSPARGGA 315 (433)
Q Consensus 252 ~W~~~~~~p~~----r~--------~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t----~~W~~~~~~p~~r~~~ 315 (433)
+-.....+|.+ +. ..-.++-..-|+++=...... ..-.+-..|+.+ .+|.. ..+....+
T Consensus 105 ~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~--g~ivvSkLnp~tL~ve~tW~T--~~~k~sa~- 179 (255)
T smart00284 105 TYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNA--GKIVISKLNPATLTIENTWIT--TYNKRSAS- 179 (255)
T ss_pred cEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCC--CCEEEEeeCcccceEEEEEEc--CCCccccc-
Confidence 75433333322 11 123344455565552222111 111233456655 34655 33333333
Q ss_pred CCCCcCCCCcCCCCEEEEECCEEEEEec----CCCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEe---CCEEEEE
Q 013929 316 ARGTEMPASAEAPPLVAVVNNELYAADY----ADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRAC---GDRLIVI 388 (433)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~ly~~gg----~~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~---~~~l~v~ 388 (433)
-++++=|.||++.. ...-.+.||+.+++=.. ..+|...... .+++..+ +.+||+.
T Consensus 180 --------------naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~-~~i~f~n~y~---~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 180 --------------NAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGH-LDIPFENMYE---YISMLDYNPNDRKLYAW 241 (255)
T ss_pred --------------ccEEEeeEEEEEccCCCCCcEEEEEEECCCCccce-eeeeeccccc---cceeceeCCCCCeEEEE
Confidence 36677789999963 12346789999876332 2333332211 1333333 4677765
Q ss_pred c
Q 013929 389 G 389 (433)
Q Consensus 389 G 389 (433)
-
T Consensus 242 d 242 (255)
T smart00284 242 N 242 (255)
T ss_pred e
Confidence 4
No 99
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.22 E-value=9.9 Score=37.94 Aligned_cols=144 Identities=12% Similarity=-0.026 Sum_probs=78.1
Q ss_pred eeEEEEEcCCCceecCCCCCCCcceeeEEEeCC-EEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEE
Q 013929 193 HVIYRYSILTNSWSSGMRMNAPRCLFGSASLGE-IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM 271 (433)
Q Consensus 193 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 271 (433)
..++++|..+++-+.+...+.... .....-++ +|++....++ ..+++++|+.++.-+.+..-...-. .....-
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~~~~~~-~~~~sp 301 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNHFGIDT-EPTWAP 301 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccCCCCcc-ceEECC
Confidence 468999999888777665442211 11222234 5655433222 2579999999988776654321111 112223
Q ss_pred CCE-EEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEEC-CEEEEEecC--CCe
Q 013929 272 DGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVN-NELYAADYA--DME 347 (433)
Q Consensus 272 ~g~-lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~ly~~gg~--~~~ 347 (433)
+|+ |++.....+ ...++.+|..++..+.+.... .... .....-+ +.|++.... ...
T Consensus 302 DG~~l~f~sd~~g-----~~~iy~~dl~~g~~~~lt~~g--~~~~-------------~~~~SpDG~~Ia~~~~~~~~~~ 361 (433)
T PRK04922 302 DGKSIYFTSDRGG-----RPQIYRVAASGGSAERLTFQG--NYNA-------------RASVSPDGKKIAMVHGSGGQYR 361 (433)
T ss_pred CCCEEEEEECCCC-----CceEEEEECCCCCeEEeecCC--CCcc-------------CEEECCCCCEEEEEECCCCcee
Confidence 554 444322221 236888999888887764211 1110 0122223 455554332 236
Q ss_pred EEEEeCCCCcEEEec
Q 013929 348 VRKYDKERRLWFTIG 362 (433)
Q Consensus 348 i~~yd~~~~~W~~v~ 362 (433)
|+++|..++..+.+.
T Consensus 362 I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 362 IAVMDLSTGSVRTLT 376 (433)
T ss_pred EEEEECCCCCeEECC
Confidence 999999998888765
No 100
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=93.17 E-value=9.1 Score=37.38 Aligned_cols=206 Identities=14% Similarity=0.096 Sum_probs=108.7
Q ss_pred EEECCEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCccee-eEEEeC--CEEEEEccCCCCCCcCCceEEEeCC
Q 013929 173 LAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLF-GSASLG--EIAILAGGSDLEGNILSSAEMYNSE 249 (433)
Q Consensus 173 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~-~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~ 249 (433)
+..+++.+++||. .+.+.+||+.|.+=.+. +...|... +.+... +.+|..+ .-..+-+|+..
T Consensus 210 vS~Dgkylatgg~------d~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s-------~Drsvkvw~~~ 274 (479)
T KOG0299|consen 210 VSSDGKYLATGGR------DRHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSAS-------ADRSVKVWSID 274 (479)
T ss_pred EcCCCcEEEecCC------CceEEEecCcccchhhc--ccccccceeeeeeecCccceeeee-------cCCceEEEehh
Confidence 3447899999986 33477888887654332 22222211 222222 2455542 12334445444
Q ss_pred CCCeEEcCCCCCCCcceeEE------EECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCC
Q 013929 250 TQTWKVLPSMKNPRKMCSGV------FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPA 323 (433)
Q Consensus 250 t~~W~~~~~~p~~r~~~~~~------~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~ 323 (433)
..... ...++|... .-.++...+||.+. ++..|++...+ +.+-. +. .
T Consensus 275 ~~s~v------etlyGHqd~v~~IdaL~reR~vtVGgrDr-------T~rlwKi~ees-qlifr-g~--~---------- 327 (479)
T KOG0299|consen 275 QLSYV------ETLYGHQDGVLGIDALSRERCVTVGGRDR-------TVRLWKIPEES-QLIFR-GG--E---------- 327 (479)
T ss_pred HhHHH------HHHhCCccceeeechhcccceEEeccccc-------eeEEEeccccc-eeeee-CC--C----------
Confidence 33221 112333222 23577888898872 34555552221 11100 00 1
Q ss_pred CcCCCCEEEEECCEEEEEecCCCeEEEEeCCCCcEEEeccCCCc------ccCCCcccEEEEEeCC-EEEEEcCCCCCCC
Q 013929 324 SAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPER------ANSMNGWGLAFRACGD-RLIVIGGPKASGE 396 (433)
Q Consensus 324 ~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~~W~~v~~lp~~------~~~~~~~~~~~~~~~~-~l~v~GG~~~~~~ 396 (433)
+...+++.++..-|+.|...+.|..|+..++.=.-+..++++ ....+.|-.+++++.+ .|+..|-.
T Consensus 328 --~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~----- 400 (479)
T KOG0299|consen 328 --GSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW----- 400 (479)
T ss_pred --CCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCC-----
Confidence 112368889999999999999999999877753222222211 1112236666666655 45555532
Q ss_pred CeeEEEEeecCCCCCCceEecccCCCcEEEEE
Q 013929 397 GFIELNSWVPSEGPPQWNLLARKQSANFVYNC 428 (433)
Q Consensus 397 ~~~~~~~~~~~~~~~~W~~v~~~p~~~~~~~~ 428 (433)
..++..|........-+.+..+|...|.-+.
T Consensus 401 -~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl 431 (479)
T KOG0299|consen 401 -SGCVRLWKIEDGLRAINLLYSLSLVGFVNSL 431 (479)
T ss_pred -CCceEEEEecCCccccceeeecccccEEEEE
Confidence 2357788776555567777777766554443
No 101
>PLN00181 protein SPA1-RELATED; Provisional
Probab=93.13 E-value=6.6 Score=42.63 Aligned_cols=173 Identities=13% Similarity=0.188 Sum_probs=84.3
Q ss_pred eeEEEEEcCCCceecCCCCCCCcceeeEEEe--CCEEEEEccCCCCCCcCCceEEEeCCCCCe-EEcCCCCCCCcceeEE
Q 013929 193 HVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTW-KVLPSMKNPRKMCSGV 269 (433)
Q Consensus 193 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~p~~r~~~~~~ 269 (433)
..+.+||..+++-...-. .....-.+++.. ++.+++.||.++ .+.+||..+..- ..+.. ......+.
T Consensus 555 g~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~~~---~~~v~~v~ 624 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMK-EHEKRVWSIDYSSADPTLLASGSDDG------SVKLWSINQGVSIGTIKT---KANICCVQ 624 (793)
T ss_pred CeEEEEECCCCeEEEEec-CCCCCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCCCcEEEEEec---CCCeEEEE
Confidence 357888987764321111 111112233332 456777777553 478888876532 11211 11111122
Q ss_pred E--ECCEEEEEccccCCCCcccceEEEEECCCCc--eEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCC
Q 013929 270 F--MDGKFYVIGGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD 345 (433)
Q Consensus 270 ~--~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~ 345 (433)
. -++.+++.|+.+ ..+.+||+.+.. ...+. +|... -..+...++..++.++..
T Consensus 625 ~~~~~g~~latgs~d-------g~I~iwD~~~~~~~~~~~~-------~h~~~---------V~~v~f~~~~~lvs~s~D 681 (793)
T PLN00181 625 FPSESGRSLAFGSAD-------HKVYYYDLRNPKLPLCTMI-------GHSKT---------VSYVRFVDSSTLVSSSTD 681 (793)
T ss_pred EeCCCCCEEEEEeCC-------CeEEEEECCCCCccceEec-------CCCCC---------EEEEEEeCCCEEEEEECC
Confidence 2 247777777765 257889987642 11111 11000 012333466777777788
Q ss_pred CeEEEEeCCCC----cEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecC
Q 013929 346 MEVRKYDKERR----LWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPS 407 (433)
Q Consensus 346 ~~i~~yd~~~~----~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~ 407 (433)
+.|..||.... .|..+..+....... .......++.+++.|+.++ .+.+|+..
T Consensus 682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i---~~v~~s~~~~~lasgs~D~------~v~iw~~~ 738 (793)
T PLN00181 682 NTLKLWDLSMSISGINETPLHSFMGHTNVK---NFVGLSVSDGYIATGSETN------EVFVYHKA 738 (793)
T ss_pred CEEEEEeCCCCccccCCcceEEEcCCCCCe---eEEEEcCCCCEEEEEeCCC------EEEEEECC
Confidence 89999998753 243333322211100 0112233566777776532 35566654
No 102
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.04 E-value=8.2 Score=36.53 Aligned_cols=216 Identities=13% Similarity=0.070 Sum_probs=107.5
Q ss_pred EEEEeeccceEEEEecCCCcEEeCCCCCCccccccCCceEEEECCEEEEECCCCCCcccceeEEEEEcCCCce-ecCCC-
Q 013929 133 WVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSW-SSGMR- 210 (433)
Q Consensus 133 ~l~~~~~~~~~~~yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~- 210 (433)
.+++....+.++.|||.+.+=.......... .....-.++.|.+..- .++.+++.++.- +.+..
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~-----~~~~~d~~g~Lv~~~~---------g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFS-----SGALIDAGGRLIACEH---------GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEECCCCcc-----cceeecCCCeEEEEcc---------ccEEEeccCCceeEEeccc
Confidence 3444455678889998765433332111110 1111222445554432 256677654433 44432
Q ss_pred ---CCCCcceeeEEEeCCEEEEEccC-----CCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEECC-EEEEEccc
Q 013929 211 ---MNAPRCLFGSASLGEIAILAGGS-----DLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDG-KFYVIGGI 281 (433)
Q Consensus 211 ---~p~~r~~~~~~~~~~~iyv~GG~-----~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g-~lyv~GG~ 281 (433)
.+..|..-..+.-++.+|+---. .........+|++||. ....++..-.....+.-+..-++ .+|+.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~a--- 180 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVA--- 180 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEE---
Confidence 34456555666667777765322 1111334579999994 44544322111122222223344 56766
Q ss_pred cCCCCcccceEEEEECCC--C------ceEecCCCCCCCCCCCCCCcCCCCcCCCC-EEEEECCEEEEEecCC-CeEEEE
Q 013929 282 GGSDSKVLTCGEEYDLET--E------TWTEIPNMSPARGGAARGTEMPASAEAPP-LVAVVNNELYAADYAD-MEVRKY 351 (433)
Q Consensus 282 ~~~~~~~~~~v~~yd~~t--~------~W~~~~~~p~~r~~~~~~~~~~~~~~~~~-~~~~~~~~ly~~gg~~-~~i~~y 351 (433)
....+.+++|+... . .+..... .. +.+. .++-.+|.||+..... ..|.+|
T Consensus 181 ----DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~-~~---------------G~PDG~~vDadG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 181 ----DTPANRIHRYDLDPATGPIGGRRGFVDFDE-EP---------------GLPDGMAVDADGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred ----eCCCCeEEEEecCcccCccCCcceEEEccC-CC---------------CCCCceEEeCCCCEEEecccCCceEEEE
Confidence 22445677776653 1 1111111 11 1112 3455688999654333 489999
Q ss_pred eCCCCcEEEeccCCCcccCCCcccEEEEEeC---CEEEEEcCCCC
Q 013929 352 DKERRLWFTIGRLPERANSMNGWGLAFRACG---DRLIVIGGPKA 393 (433)
Q Consensus 352 d~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~---~~l~v~GG~~~ 393 (433)
++. ++=...-.+|.... ..++.-+ +.|||......
T Consensus 241 ~pd-G~l~~~i~lP~~~~------t~~~FgG~~~~~L~iTs~~~~ 278 (307)
T COG3386 241 NPD-GKLLGEIKLPVKRP------TNPAFGGPDLNTLYITSARSG 278 (307)
T ss_pred CCC-CcEEEEEECCCCCC------ccceEeCCCcCEEEEEecCCC
Confidence 999 44334445665432 2233334 68888886643
No 103
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.03 E-value=4.8 Score=35.30 Aligned_cols=186 Identities=15% Similarity=0.098 Sum_probs=108.2
Q ss_pred ceEEEECCEEEEECCCCCCcccceeEEEEEcCCCceecCCCCC-CCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeC
Q 013929 170 KESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMN-APRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNS 248 (433)
Q Consensus 170 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 248 (433)
.++...++.+|..-|.. ....+.++|..+++=..-.+++ ..-.+-+.+.+++.+|+.-=.+ .-.++||+
T Consensus 49 QGL~~~~g~i~esTG~y----g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~e------gvaf~~d~ 118 (262)
T COG3823 49 QGLEYLDGHILESTGLY----GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKE------GVAFKYDA 118 (262)
T ss_pred cceeeeCCEEEEecccc----ccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEecc------ceeEEECh
Confidence 34566788888776652 3346899999977532222233 3345567888899999883211 23567776
Q ss_pred CCCCeEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceE---ec--CCCCCCCCCCCCCCcCCC
Q 013929 249 ETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWT---EI--PNMSPARGGAARGTEMPA 323 (433)
Q Consensus 249 ~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~---~~--~~~p~~r~~~~~~~~~~~ 323 (433)
.+ .+++...+.+-.+.+.+.-+..+.+--|.. .+..-||++-.=. .+ ...|...-.
T Consensus 119 ~t--~~~lg~~~y~GeGWgLt~d~~~LimsdGsa--------tL~frdP~tfa~~~~v~VT~~g~pv~~LN--------- 179 (262)
T COG3823 119 DT--LEELGRFSYEGEGWGLTSDDKNLIMSDGSA--------TLQFRDPKTFAELDTVQVTDDGVPVSKLN--------- 179 (262)
T ss_pred HH--hhhhcccccCCcceeeecCCcceEeeCCce--------EEEecCHHHhhhcceEEEEECCeeccccc---------
Confidence 64 456666666666777777777766654432 2333455543211 01 111111111
Q ss_pred CcCCCCEEEEECCEEEEEecCCCeEEEEeCCCC---cEEEeccCCCcccCCC-----cccEEEEEeCCEEEEEcC
Q 013929 324 SAEAPPLVAVVNNELYAADYADMEVRKYDKERR---LWFTIGRLPERANSMN-----GWGLAFRACGDRLIVIGG 390 (433)
Q Consensus 324 ~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~---~W~~v~~lp~~~~~~~-----~~~~~~~~~~~~l~v~GG 390 (433)
-.--++|.+|.==..+..|.+.||+++ .|.++..++....... --|.+...-.+++|+.|-
T Consensus 180 ------ELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 180 ------ELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ------ceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 234467777764345688999999998 4988887765432111 113555556678998884
No 104
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.99 E-value=9.9 Score=37.35 Aligned_cols=146 Identities=13% Similarity=0.099 Sum_probs=74.5
Q ss_pred ECCEEEEECCCCCCcccceeEEEEEcCCCce-ecCC--CCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCC
Q 013929 175 VGTELLVFGRELTAHHISHVIYRYSILTNSW-SSGM--RMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQ 251 (433)
Q Consensus 175 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 251 (433)
.+|+++..|+. ...+-+||..++.- +.+. ..|..+ --....++.+++.|+-+ ..+-.+|..+.
T Consensus 78 ~DG~LlaaGD~------sG~V~vfD~k~r~iLR~~~ah~apv~~--~~f~~~d~t~l~s~sDd------~v~k~~d~s~a 143 (487)
T KOG0310|consen 78 SDGRLLAAGDE------SGHVKVFDMKSRVILRQLYAHQAPVHV--TKFSPQDNTMLVSGSDD------KVVKYWDLSTA 143 (487)
T ss_pred cCCeEEEccCC------cCcEEEeccccHHHHHHHhhccCceeE--EEecccCCeEEEecCCC------ceEEEEEcCCc
Confidence 47999999975 34588999555321 2221 122211 12234588888887633 22344455444
Q ss_pred CeE-EcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCE
Q 013929 252 TWK-VLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPL 330 (433)
Q Consensus 252 ~W~-~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~ 330 (433)
.=+ ++..-..-.........++.|++.|||++ .|-.||+.+.+ ..+-.+..+..-. .
T Consensus 144 ~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg-------~vrl~DtR~~~-~~v~elnhg~pVe--------------~ 201 (487)
T KOG0310|consen 144 YVQAELSGHTDYVRCGDISPANDHIVVTGSYDG-------KVRLWDTRSLT-SRVVELNHGCPVE--------------S 201 (487)
T ss_pred EEEEEecCCcceeEeeccccCCCeEEEecCCCc-------eEEEEEeccCC-ceeEEecCCCcee--------------e
Confidence 311 11111111111223346788999999984 36778888773 2222222211111 2
Q ss_pred EEEE-CCEEEEEecCCCeEEEEeCCCCc
Q 013929 331 VAVV-NNELYAADYADMEVRKYDKERRL 357 (433)
Q Consensus 331 ~~~~-~~~ly~~gg~~~~i~~yd~~~~~ 357 (433)
++.. .|.+++..| .+.+.+||..++.
T Consensus 202 vl~lpsgs~iasAg-Gn~vkVWDl~~G~ 228 (487)
T KOG0310|consen 202 VLALPSGSLIASAG-GNSVKVWDLTTGG 228 (487)
T ss_pred EEEcCCCCEEEEcC-CCeEEEEEecCCc
Confidence 3333 334444422 3678888887554
No 105
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=92.93 E-value=6.6 Score=35.14 Aligned_cols=143 Identities=15% Similarity=0.130 Sum_probs=66.2
Q ss_pred CEEEEECCCCCCcccceeEEEEEcCCCcee-cCCCCCCCcceeeEEEeC-CEEEEEccCCCCCCcCCceEEEeCCCCCeE
Q 013929 177 TELLVFGRELTAHHISHVIYRYSILTNSWS-SGMRMNAPRCLFGSASLG-EIAILAGGSDLEGNILSSAEMYNSETQTWK 254 (433)
Q Consensus 177 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 254 (433)
+.+++.++. ...+.+||..+.+-. .+.. .......+.... +.+++.|..+ ..+.+||..+..-
T Consensus 105 ~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~- 169 (289)
T cd00200 105 GRILSSSSR------DKTIKVWDVETGKCLTTLRG--HTDWVNSVAFSPDGTFVASSSQD------GTIKLWDLRTGKC- 169 (289)
T ss_pred CCEEEEecC------CCeEEEEECCCcEEEEEecc--CCCcEEEEEEcCcCCEEEEEcCC------CcEEEEEcccccc-
Confidence 355555542 235888998755432 2221 111112223333 3444444312 3578888875431
Q ss_pred EcCCCCCCC-cceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEE
Q 013929 255 VLPSMKNPR-KMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVA 332 (433)
Q Consensus 255 ~~~~~p~~r-~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~ 332 (433)
+..+.... .-..... -+++.+++++.+ ..+.+||..+..-... +....... ..+.
T Consensus 170 -~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-------~~i~i~d~~~~~~~~~--~~~~~~~i-------------~~~~ 226 (289)
T cd00200 170 -VATLTGHTGEVNSVAFSPDGEKLLSSSSD-------GTIKLWDLSTGKCLGT--LRGHENGV-------------NSVA 226 (289)
T ss_pred -ceeEecCccccceEEECCCcCEEEEecCC-------CcEEEEECCCCceecc--hhhcCCce-------------EEEE
Confidence 11111111 1112222 244355555443 2478899876443221 11100010 1233
Q ss_pred EEC-CEEEEEecCCCeEEEEeCCCCc
Q 013929 333 VVN-NELYAADYADMEVRKYDKERRL 357 (433)
Q Consensus 333 ~~~-~~ly~~gg~~~~i~~yd~~~~~ 357 (433)
... +.+++.++..+.+..||..+..
T Consensus 227 ~~~~~~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 227 FSPDGYLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred EcCCCcEEEEEcCCCcEEEEEcCCce
Confidence 333 5666666558899999987643
No 106
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.89 E-value=11 Score=37.52 Aligned_cols=146 Identities=8% Similarity=-0.072 Sum_probs=78.2
Q ss_pred ceEEEEecCCCcEEeCCCCCCccccccCCceEEEECC-EEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcceee
Q 013929 141 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGT-ELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFG 219 (433)
Q Consensus 141 ~~~~~yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~ 219 (433)
..++.+|..+.+-..+...+.... ......++ +|++..... ...++|++|..+++.+++...+..-..+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~-----~~~~SpDG~~la~~~~~~----g~~~Iy~~d~~~~~~~~lt~~~~~~~~~- 292 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNG-----APAWSPDGSKLAFVLSKD----GNPEIYVMDLASRQLSRVTNHPAIDTEP- 292 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcC-----CeEECCCCCEEEEEEccC----CCceEEEEECCCCCeEEcccCCCCcCCe-
Confidence 468888988887777654432110 01122233 454432211 1247999999999888765432211111
Q ss_pred EEEeC-CEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCccee-EEEECC-EEEEEccccCCCCcccceEEEEE
Q 013929 220 SASLG-EIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCS-GVFMDG-KFYVIGGIGGSDSKVLTCGEEYD 296 (433)
Q Consensus 220 ~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~-~~~~~g-~lyv~GG~~~~~~~~~~~v~~yd 296 (433)
...-+ .+|++..... ....++.+|..++.++.+.... ..... ...-+| .|++.....+ ...++.+|
T Consensus 293 ~~spDg~~i~f~s~~~----g~~~iy~~d~~~g~~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~~-----~~~l~~~d 361 (430)
T PRK00178 293 FWGKDGRTLYFTSDRG----GKPQIYKVNVNGGRAERVTFVG--NYNARPRLSADGKTLVMVHRQDG-----NFHVAAQD 361 (430)
T ss_pred EECCCCCEEEEEECCC----CCceEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEEccCC-----ceEEEEEE
Confidence 12223 4565543222 1357899999998887764321 11111 222344 4444432221 23588999
Q ss_pred CCCCceEecCC
Q 013929 297 LETETWTEIPN 307 (433)
Q Consensus 297 ~~t~~W~~~~~ 307 (433)
+.++..+.+..
T Consensus 362 l~tg~~~~lt~ 372 (430)
T PRK00178 362 LQRGSVRILTD 372 (430)
T ss_pred CCCCCEEEccC
Confidence 99998887754
No 107
>PRK04792 tolB translocation protein TolB; Provisional
Probab=92.74 E-value=12 Score=37.60 Aligned_cols=148 Identities=13% Similarity=-0.025 Sum_probs=78.8
Q ss_pred ceEEEEecCCCcEEeCCCCCCccccccCCceEEEEC-CEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcceee
Q 013929 141 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVG-TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFG 219 (433)
Q Consensus 141 ~~~~~yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~ 219 (433)
..++.+|..+.+-..+...+.... .....-+ ..|++..... ...++|++|..+++.+++..-...-. ..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~-----~~~wSPDG~~La~~~~~~----g~~~Iy~~dl~tg~~~~lt~~~~~~~-~p 311 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGING-----APRFSPDGKKLALVLSKD----GQPEIYVVDIATKALTRITRHRAIDT-EP 311 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcC-----CeeECCCCCEEEEEEeCC----CCeEEEEEECCCCCeEECccCCCCcc-ce
Confidence 468888888877666654432211 0112223 3455443221 23469999999998887754321111 11
Q ss_pred EEEeCC-EEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECC
Q 013929 220 SASLGE-IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLE 298 (433)
Q Consensus 220 ~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~ 298 (433)
...-++ +|++.....+ ...++++|..++.++.+.... .........-+|+.+++.+... ....++.+|+.
T Consensus 312 ~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~----g~~~I~~~dl~ 382 (448)
T PRK04792 312 SWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTN----GKFNIARQDLE 382 (448)
T ss_pred EECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecC----CceEEEEEECC
Confidence 122244 4555432221 257999999999888774211 1111122233555444433321 12357889999
Q ss_pred CCceEecCC
Q 013929 299 TETWTEIPN 307 (433)
Q Consensus 299 t~~W~~~~~ 307 (433)
++..+.+..
T Consensus 383 ~g~~~~lt~ 391 (448)
T PRK04792 383 TGAMQVLTS 391 (448)
T ss_pred CCCeEEccC
Confidence 988877653
No 108
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.72 E-value=10 Score=36.86 Aligned_cols=202 Identities=17% Similarity=0.088 Sum_probs=104.8
Q ss_pred EEECCEEEEECCCCCCcccceeEEEEEcCCCc--eecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCC
Q 013929 173 LAVGTELLVFGRELTAHHISHVIYRYSILTNS--WSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSET 250 (433)
Q Consensus 173 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t 250 (433)
+..++++|+... ...++.+|+.+++ |+.....-...........+++||+- ..+ ..+++||..+
T Consensus 65 ~~~dg~v~~~~~-------~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g-~~~------g~~y~ld~~~ 130 (370)
T COG1520 65 ADGDGTVYVGTR-------DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVG-SWD------GKLYALDAST 130 (370)
T ss_pred EeeCCeEEEecC-------CCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEe-ccc------ceEEEEECCC
Confidence 666889998721 1158999999987 86433210011111122227887764 222 2688999975
Q ss_pred C--CeEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCC--ceEecCCC--CCCCCCCCCCCcCCCC
Q 013929 251 Q--TWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETE--TWTEIPNM--SPARGGAARGTEMPAS 324 (433)
Q Consensus 251 ~--~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~--~W~~~~~~--p~~r~~~~~~~~~~~~ 324 (433)
+ .|+.-.... ++..-..++.++.+|+.. ....++.+|..++ .|+.-.+. .....+
T Consensus 131 G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s--------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~---------- 191 (370)
T COG1520 131 GTLVWSRNVGGS-PYYASPPVVGDGTVYVGT--------DDGHLYALNADTGTLKWTYETPAPLSLSIYG---------- 191 (370)
T ss_pred CcEEEEEecCCC-eEEecCcEEcCcEEEEec--------CCCeEEEEEccCCcEEEEEecCCcccccccc----------
Confidence 5 487644332 333444556677777763 1124577777755 47743322 222222
Q ss_pred cCCCCEEEEECCEEEEEecC-CCeEEEEeCCCC--cEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCC-CCCCCCeeE
Q 013929 325 AEAPPLVAVVNNELYAADYA-DMEVRKYDKERR--LWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGP-KASGEGFIE 400 (433)
Q Consensus 325 ~~~~~~~~~~~~~ly~~gg~-~~~i~~yd~~~~--~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~-~~~~~~~~~ 400 (433)
.....++.+|+.... ...++.+|++++ .|..-...+....... ......++.||+-|+. ... ....
T Consensus 192 -----~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~---~~~~~~~~~v~v~~~~~~~~--~~g~ 261 (370)
T COG1520 192 -----SPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAIS---TTPAVDGGPVYVDGGVYAGS--YGGK 261 (370)
T ss_pred -----CceeecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCccccc---ccccccCceEEECCcEEEEe--cCCe
Confidence 233667777776322 447999999876 4875332222221000 0012234445544442 111 1112
Q ss_pred EEEeecCCCCCCceEec
Q 013929 401 LNSWVPSEGPPQWNLLA 417 (433)
Q Consensus 401 ~~~~~~~~~~~~W~~v~ 417 (433)
+.+.+.+..+..|+.=.
T Consensus 262 ~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 262 LLCLDADTGELIWSFPA 278 (370)
T ss_pred EEEEEcCCCceEEEEec
Confidence 45556655666776554
No 109
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=92.58 E-value=1.9 Score=34.95 Aligned_cols=82 Identities=11% Similarity=0.159 Sum_probs=54.7
Q ss_pred EEECCEEEEEecC----CCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecC
Q 013929 332 AVVNNELYAADYA----DMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPS 407 (433)
Q Consensus 332 ~~~~~~ly~~gg~----~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~ 407 (433)
+.+||.+|-+... ...|..||..+.+|+.+....... .......++.++|+|-++.-..... ...+++|.++
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~--~~~~~~~L~~~~G~L~~v~~~~~~~--~~~~~iWvLe 77 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPY--SSDCSSTLIEYKGKLALVSYNDQGE--PDSIDIWVLE 77 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeec--cccCccEEEEeCCeEEEEEecCCCC--cceEEEEEee
Confidence 3578888888643 478999999999998876320111 1113367888999999877443221 3567788774
Q ss_pred -CCCCCceEec
Q 013929 408 -EGPPQWNLLA 417 (433)
Q Consensus 408 -~~~~~W~~v~ 417 (433)
.++.+|...-
T Consensus 78 D~~k~~Wsk~~ 88 (129)
T PF08268_consen 78 DYEKQEWSKKH 88 (129)
T ss_pred ccccceEEEEE
Confidence 3467898663
No 110
>PRK04043 tolB translocation protein TolB; Provisional
Probab=92.41 E-value=13 Score=37.07 Aligned_cols=143 Identities=7% Similarity=0.030 Sum_probs=82.0
Q ss_pred eeEEEEEcCCCceecCCCCCCCcceeeEEEeCC-EEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEE
Q 013929 193 HVIYRYSILTNSWSSGMRMNAPRCLFGSASLGE-IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM 271 (433)
Q Consensus 193 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 271 (433)
.++|++|..+++=+.+...+..- .....+-++ +|.+.-...+ ..++|++|..++.++.+...+.. .......-
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~-~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~~~~-d~~p~~SP 286 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGML-VVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNYPGI-DVNGNFVE 286 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcE-EeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccCCCc-cCccEECC
Confidence 37999999888766665432211 112223344 5555433222 36799999999999988765431 11112223
Q ss_pred CC-EEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECC-EEEEEecC-----
Q 013929 272 DG-KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNN-ELYAADYA----- 344 (433)
Q Consensus 272 ~g-~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~-~ly~~gg~----- 344 (433)
+| +||+..... ....++++|+.++..+++..- .... ....-+| .|......
T Consensus 287 DG~~I~F~Sdr~-----g~~~Iy~~dl~~g~~~rlt~~--g~~~---------------~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 287 DDKRIVFVSDRL-----GYPNIFMKKLNSGSVEQVVFH--GKNN---------------SSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred CCCEEEEEECCC-----CCceEEEEECCCCCeEeCccC--CCcC---------------ceECCCCCEEEEEEcCCCccc
Confidence 44 566664332 224689999999888776431 1111 1222233 34333321
Q ss_pred ---CCeEEEEeCCCCcEEEecc
Q 013929 345 ---DMEVRKYDKERRLWFTIGR 363 (433)
Q Consensus 345 ---~~~i~~yd~~~~~W~~v~~ 363 (433)
...++.+|.+++.++.+..
T Consensus 345 ~~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred CCCCcEEEEEECCCCCeEECCC
Confidence 1479999999999988865
No 111
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=92.26 E-value=0.045 Score=50.42 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=37.1
Q ss_pred CCCCchhHHHhhccccC-----cccchhhhhhcHHHHHhhcCcceeee
Q 013929 81 IQPIGRDNSISCLIRCS-----RSDYGSIASLNQSFRSLIRSGELYRL 123 (433)
Q Consensus 81 ~~~LP~dl~~~iL~rlP-----~~~~~~~~~V~k~w~~ll~~~~~~~~ 123 (433)
|.-||||++.+||.++= ..++.++++|||.|+-.+.+++|+..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 34699999999987654 48999999999999999999998744
No 112
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=92.23 E-value=3.2 Score=40.15 Aligned_cols=106 Identities=9% Similarity=0.065 Sum_probs=65.6
Q ss_pred CCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCCcEEEeccCCCcccCCC--cccE
Q 013929 299 TETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMN--GWGL 376 (433)
Q Consensus 299 t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~~W~~v~~lp~~~~~~~--~~~~ 376 (433)
.+.|+.+.. ...+.. .++.++|++|++. ..+.+++++.+- .=.++++......... +...
T Consensus 189 ~~~Wt~l~~-~~~~~~---------------DIi~~kGkfYAvD-~~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~ 250 (373)
T PLN03215 189 GNVLKALKQ-MGYHFS---------------DIIVHKGQTYALD-SIGIVYWINSDL-EFSRFGTSLDENITDGCWTGDR 250 (373)
T ss_pred CCeeeEccC-CCceee---------------EEEEECCEEEEEc-CCCeEEEEecCC-ceeeecceecccccCCcccCce
Confidence 489999974 333333 5899999999995 347888888432 2223322111000000 0113
Q ss_pred EEEEeCCEEEEEcCCCCCC-----------CCeeEEEEeecCCCCCCceEecccCCC
Q 013929 377 AFRACGDRLIVIGGPKASG-----------EGFIELNSWVPSEGPPQWNLLARKQSA 422 (433)
Q Consensus 377 ~~~~~~~~l~v~GG~~~~~-----------~~~~~~~~~~~~~~~~~W~~v~~~p~~ 422 (433)
-++...|.|+++....... ..+....+|..|.+..+|.++..|...
T Consensus 251 yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~ 307 (373)
T PLN03215 251 RFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDN 307 (373)
T ss_pred eEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCe
Confidence 4667788899888642211 134678889999888999999998743
No 113
>PRK05137 tolB translocation protein TolB; Provisional
Probab=92.22 E-value=13 Score=37.00 Aligned_cols=145 Identities=10% Similarity=-0.072 Sum_probs=74.8
Q ss_pred ceeEEEEEcCCCceecCCCCCCCcceeeEEEeCC-EEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEE
Q 013929 192 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGE-IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF 270 (433)
Q Consensus 192 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~ 270 (433)
...+++.|.....=+.+..-..+ ......+-++ +|+.. ..... ...++++|+.++..+.+...+..-.. ....
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~-v~~p~wSpDG~~lay~-s~~~g---~~~i~~~dl~~g~~~~l~~~~g~~~~-~~~S 254 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSL-VLTPRFSPNRQEITYM-SYANG---RPRVYLLDLETGQRELVGNFPGMTFA-PRFS 254 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCC-eEeeEECCCCCEEEEE-EecCC---CCEEEEEECCCCcEEEeecCCCcccC-cEEC
Confidence 45688888755433333221111 1111122244 44333 22211 26799999999988877654432221 1222
Q ss_pred ECCE-EEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCE-EEEEec--CCC
Q 013929 271 MDGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNE-LYAADY--ADM 346 (433)
Q Consensus 271 ~~g~-lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~-ly~~gg--~~~ 346 (433)
-+|+ |++....++ ...++.+|+.++.-+.+...+..... ....-+++ |++... ...
T Consensus 255 PDG~~la~~~~~~g-----~~~Iy~~d~~~~~~~~Lt~~~~~~~~---------------~~~spDG~~i~f~s~~~g~~ 314 (435)
T PRK05137 255 PDGRKVVMSLSQGG-----NTDIYTMDLRSGTTTRLTDSPAIDTS---------------PSYSPDGSQIVFESDRSGSP 314 (435)
T ss_pred CCCCEEEEEEecCC-----CceEEEEECCCCceEEccCCCCccCc---------------eeEcCCCCEEEEEECCCCCC
Confidence 3554 444433221 24688999999887776543211111 12233443 443321 134
Q ss_pred eEEEEeCCCCcEEEec
Q 013929 347 EVRKYDKERRLWFTIG 362 (433)
Q Consensus 347 ~i~~yd~~~~~W~~v~ 362 (433)
.|+.+|..++..+.+.
T Consensus 315 ~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 315 QLYVMNADGSNPRRIS 330 (435)
T ss_pred eEEEEECCCCCeEEee
Confidence 7999999888777765
No 114
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=92.18 E-value=22 Score=40.01 Aligned_cols=161 Identities=18% Similarity=0.144 Sum_probs=86.6
Q ss_pred CCEEEEECCCCCCcccceeEEEEEcCCCceecCCC----------CCC---CcceeeEEEe--CCEEEEEccCCCCCCcC
Q 013929 176 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMR----------MNA---PRCLFGSASL--GEIAILAGGSDLEGNIL 240 (433)
Q Consensus 176 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~----------~p~---~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 240 (433)
++.+||.... .+.+++||+.++....+.. .+. -.....++.. ++.|||... ..
T Consensus 694 ~g~LyVad~~------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs------~n 761 (1057)
T PLN02919 694 NEKVYIAMAG------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS------ES 761 (1057)
T ss_pred CCeEEEEECC------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC------CC
Confidence 5788887532 3458899988776543211 000 0111223332 346998843 23
Q ss_pred CceEEEeCCCCCeEEcC--C--CCC--------------CC--cceeEE-EECCEEEEEccccCCCCcccceEEEEECCC
Q 013929 241 SSAEMYNSETQTWKVLP--S--MKN--------------PR--KMCSGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLET 299 (433)
Q Consensus 241 ~~~~~yd~~t~~W~~~~--~--~p~--------------~r--~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t 299 (433)
+.+.+||+.++....+. . .+. .. .-.+++ .-+|.+||.-.. .+.|.+||+.+
T Consensus 762 ~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~-------N~rIrviD~~t 834 (1057)
T PLN02919 762 SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY-------NHKIKKLDPAT 834 (1057)
T ss_pred CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC-------CCEEEEEECCC
Confidence 67999999876533211 0 000 00 111222 246789988543 35689999998
Q ss_pred CceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCc
Q 013929 300 ETWTEIPNMSPARGGAARGTEMPASAEAPPLVAV-VNNELYAADYADMEVRKYDKERRL 357 (433)
Q Consensus 300 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~i~~yd~~~~~ 357 (433)
+....+...... +...+....+....+.++++ -+|++||....++.|.++|..+++
T Consensus 835 g~v~tiaG~G~~--G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 835 KRVTTLAGTGKA--GFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CeEEEEeccCCc--CCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 887765432110 00000000000111223433 368999999888999999998875
No 115
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.10 E-value=3.7 Score=39.09 Aligned_cols=120 Identities=16% Similarity=0.146 Sum_probs=70.2
Q ss_pred CceEEEeCCCC-----CeEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc-eEecCCCCCCCCC
Q 013929 241 SSAEMYNSETQ-----TWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET-WTEIPNMSPARGG 314 (433)
Q Consensus 241 ~~~~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~ 314 (433)
..+.+|+..+. +.+.+......-.-.+.+.++|++.+..| +.+.+|++.... +.....+..+-..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g---------~~l~v~~l~~~~~l~~~~~~~~~~~i 132 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG---------NKLYVYDLDNSKTLLKKAFYDSPFYI 132 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET---------TEEEEEEEETTSSEEEEEEE-BSSSE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec---------CEEEEEEccCcccchhhheecceEEE
Confidence 56889998885 55555544444445667778999666644 347888888887 7776654433332
Q ss_pred CCCCCcCCCCcCCCCEEEEECCEEEEEecCCC--eEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEe-CCEEEEEc
Q 013929 315 AARGTEMPASAEAPPLVAVVNNELYAADYADM--EVRKYDKERRLWFTIGRLPERANSMNGWGLAFRAC-GDRLIVIG 389 (433)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~--~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~-~~~l~v~G 389 (433)
.++.+.++.|++-. ... .+..|+.+..+-..++.-..++. ..++..+ ++..++++
T Consensus 133 --------------~sl~~~~~~I~vgD-~~~sv~~~~~~~~~~~l~~va~d~~~~~-----v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 133 --------------TSLSVFKNYILVGD-AMKSVSLLRYDEENNKLILVARDYQPRW-----VTAAEFLVDEDTIIVG 190 (321)
T ss_dssp --------------EEEEEETTEEEEEE-SSSSEEEEEEETTTE-EEEEEEESS-BE-----EEEEEEE-SSSEEEEE
T ss_pred --------------EEEeccccEEEEEE-cccCEEEEEEEccCCEEEEEEecCCCcc-----EEEEEEecCCcEEEEE
Confidence 25677788766554 334 44566876666777764343332 2444445 55544433
No 116
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=91.46 E-value=15 Score=36.10 Aligned_cols=146 Identities=10% Similarity=-0.087 Sum_probs=73.5
Q ss_pred ceeEEEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEE
Q 013929 192 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM 271 (433)
Q Consensus 192 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 271 (433)
...+++.|.....=+.+...... .......-+++.+++...... ...++++|..++.-+.+...+..... ....-
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~-~~~p~~Spdg~~la~~~~~~~---~~~i~v~d~~~g~~~~~~~~~~~~~~-~~~sp 243 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREP-ILSPAWSPDGQKLAYVSFESG---KPEIYVQDLATGQREKVASFPGMNGA-PAFSP 243 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCc-eecccCCCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEeecCCCCccc-eEECC
Confidence 44577777754433333221111 111112234443334333221 25799999998876666544322222 12223
Q ss_pred CC-EEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECC-EEEEEec--CCCe
Q 013929 272 DG-KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNN-ELYAADY--ADME 347 (433)
Q Consensus 272 ~g-~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~-~ly~~gg--~~~~ 347 (433)
+| .|++..... ....++.+|+.++..+.+......... .....++ .|++... ....
T Consensus 244 Dg~~l~~~~~~~-----~~~~i~~~d~~~~~~~~l~~~~~~~~~---------------~~~s~dg~~l~~~s~~~g~~~ 303 (417)
T TIGR02800 244 DGSKLAVSLSKD-----GNPDIYVMDLDGKQLTRLTNGPGIDTE---------------PSWSPDGKSIAFTSDRGGSPQ 303 (417)
T ss_pred CCCEEEEEECCC-----CCccEEEEECCCCCEEECCCCCCCCCC---------------EEECCCCCEEEEEECCCCCce
Confidence 44 455543322 124688999999887776533211111 1122244 4544432 2247
Q ss_pred EEEEeCCCCcEEEec
Q 013929 348 VRKYDKERRLWFTIG 362 (433)
Q Consensus 348 i~~yd~~~~~W~~v~ 362 (433)
|+.+|..++.++.+.
T Consensus 304 iy~~d~~~~~~~~l~ 318 (417)
T TIGR02800 304 IYMMDADGGEVRRLT 318 (417)
T ss_pred EEEEECCCCCEEEee
Confidence 999999988887765
No 117
>PRK03629 tolB translocation protein TolB; Provisional
Probab=91.42 E-value=16 Score=36.35 Aligned_cols=167 Identities=5% Similarity=-0.109 Sum_probs=86.4
Q ss_pred eeEEEEEcCCCceecCCCCCCCcceeeEEEeCC-EEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEE
Q 013929 193 HVIYRYSILTNSWSSGMRMNAPRCLFGSASLGE-IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM 271 (433)
Q Consensus 193 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 271 (433)
..++++|..+++-+.+...+..-.. ....-++ +|++.....+ ...++++|..++..+.+..-...- ......-
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~-~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~~~~~-~~~~wSP 296 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGA-PAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRSNN-TEPTWFP 296 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCC-eEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCCCCCc-CceEECC
Confidence 4689999988876666554332111 1222244 5655433222 246999999998887775432211 1112223
Q ss_pred CCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECC-EEEEEecC--CCeE
Q 013929 272 DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNN-ELYAADYA--DMEV 348 (433)
Q Consensus 272 ~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~-~ly~~gg~--~~~i 348 (433)
+|+..++....+ ....++.+|+.++.-+.+..... .... ....-+| .|++.... ...+
T Consensus 297 DG~~I~f~s~~~----g~~~Iy~~d~~~g~~~~lt~~~~-~~~~--------------~~~SpDG~~Ia~~~~~~g~~~I 357 (429)
T PRK03629 297 DSQNLAYTSDQA----GRPQVYKVNINGGAPQRITWEGS-QNQD--------------ADVSSDGKFMVMVSSNGGQQHI 357 (429)
T ss_pred CCCEEEEEeCCC----CCceEEEEECCCCCeEEeecCCC-CccC--------------EEECCCCCEEEEEEccCCCceE
Confidence 555333332211 12367888998877666532111 1110 1223344 44444322 2468
Q ss_pred EEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCC
Q 013929 349 RKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGP 391 (433)
Q Consensus 349 ~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~ 391 (433)
+.+|+.+++++.+....... ..+ ..-+|+.+++.+.
T Consensus 358 ~~~dl~~g~~~~Lt~~~~~~------~p~-~SpDG~~i~~~s~ 393 (429)
T PRK03629 358 AKQDLATGGVQVLTDTFLDE------TPS-IAPNGTMVIYSSS 393 (429)
T ss_pred EEEECCCCCeEEeCCCCCCC------Cce-ECCCCCEEEEEEc
Confidence 89999999988876321111 122 2356666666554
No 118
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.90 E-value=11 Score=33.62 Aligned_cols=170 Identities=13% Similarity=0.174 Sum_probs=99.8
Q ss_pred eeEEEEEcCCCcee-cCCCCCCCcceeeEEEeC--CEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEE
Q 013929 193 HVIYRYSILTNSWS-SGMRMNAPRCLFGSASLG--EIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV 269 (433)
Q Consensus 193 ~~~~~yd~~t~~W~-~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~ 269 (433)
..+.+||..|++-- +... .-.....+.++ ..|.+-|+++ +.+..+|..+++.+.+.-+-..+..-.++
T Consensus 81 k~v~vwDV~TGkv~Rr~rg---H~aqVNtV~fNeesSVv~SgsfD------~s~r~wDCRS~s~ePiQildea~D~V~Si 151 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRG---HLAQVNTVRFNEESSVVASGSFD------SSVRLWDCRSRSFEPIQILDEAKDGVSSI 151 (307)
T ss_pred ceEEEEEcccCeeeeeccc---ccceeeEEEecCcceEEEecccc------ceeEEEEcccCCCCccchhhhhcCceeEE
Confidence 35899999998632 1110 00111222333 3566666655 55889999999988887777778888888
Q ss_pred EECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEE
Q 013929 270 FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVR 349 (433)
Q Consensus 270 ~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~ 349 (433)
.+.+...+.|..+| .+-.||+..++-.. .-+..|... ....-++.-.++|.....+.
T Consensus 152 ~v~~heIvaGS~DG-------tvRtydiR~G~l~s-Dy~g~pit~---------------vs~s~d~nc~La~~l~stlr 208 (307)
T KOG0316|consen 152 DVAEHEIVAGSVDG-------TVRTYDIRKGTLSS-DYFGHPITS---------------VSFSKDGNCSLASSLDSTLR 208 (307)
T ss_pred EecccEEEeeccCC-------cEEEEEeecceeeh-hhcCCccee---------------EEecCCCCEEEEeeccceee
Confidence 88888888877664 25679987764321 112222222 12333555556665667778
Q ss_pred EEeCCCCcEEEe----ccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecC
Q 013929 350 KYDKERRLWFTI----GRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPS 407 (433)
Q Consensus 350 ~yd~~~~~W~~v----~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~ 407 (433)
..|.++++-.+. ..+... .-++..+..-.|++|..+. .+..|++-
T Consensus 209 LlDk~tGklL~sYkGhkn~eyk--------ldc~l~qsdthV~sgSEDG-----~Vy~wdLv 257 (307)
T KOG0316|consen 209 LLDKETGKLLKSYKGHKNMEYK--------LDCCLNQSDTHVFSGSEDG-----KVYFWDLV 257 (307)
T ss_pred ecccchhHHHHHhcccccceee--------eeeeecccceeEEeccCCc-----eEEEEEec
Confidence 888888763222 122221 3344455555667776442 36677764
No 119
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.47 E-value=11 Score=33.76 Aligned_cols=132 Identities=14% Similarity=0.132 Sum_probs=78.8
Q ss_pred eeEEEEEcCCCceecC-CCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCccee----
Q 013929 193 HVIYRYSILTNSWSSG-MRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCS---- 267 (433)
Q Consensus 193 ~~~~~yd~~t~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~---- 267 (433)
..+-.|||..+.--+. ..-....-. ...+.++.-+..||-+ ..++++|..|++--. . ..+|.
T Consensus 39 rtvrLWNp~rg~liktYsghG~EVlD-~~~s~Dnskf~s~GgD------k~v~vwDV~TGkv~R--r----~rgH~aqVN 105 (307)
T KOG0316|consen 39 RTVRLWNPLRGALIKTYSGHGHEVLD-AALSSDNSKFASCGGD------KAVQVWDVNTGKVDR--R----FRGHLAQVN 105 (307)
T ss_pred ceEEeecccccceeeeecCCCceeee-ccccccccccccCCCC------ceEEEEEcccCeeee--e----cccccceee
Confidence 3577788887765332 111111111 1122334334444422 558899999875211 0 11221
Q ss_pred EEEEC--CEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCC
Q 013929 268 GVFMD--GKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD 345 (433)
Q Consensus 268 ~~~~~--g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~ 345 (433)
++.+| ..+.+-|+.+ .++..||-.++..+.+..+...+.+. +.+.+.+...+.|...
T Consensus 106 tV~fNeesSVv~SgsfD-------~s~r~wDCRS~s~ePiQildea~D~V--------------~Si~v~~heIvaGS~D 164 (307)
T KOG0316|consen 106 TVRFNEESSVVASGSFD-------SSVRLWDCRSRSFEPIQILDEAKDGV--------------SSIDVAEHEIVAGSVD 164 (307)
T ss_pred EEEecCcceEEEecccc-------ceeEEEEcccCCCCccchhhhhcCce--------------eEEEecccEEEeeccC
Confidence 22333 3455556655 35788999999888887777777664 5677888888888888
Q ss_pred CeEEEEeCCCCcE
Q 013929 346 MEVRKYDKERRLW 358 (433)
Q Consensus 346 ~~i~~yd~~~~~W 358 (433)
+.+..||+..++-
T Consensus 165 GtvRtydiR~G~l 177 (307)
T KOG0316|consen 165 GTVRTYDIRKGTL 177 (307)
T ss_pred CcEEEEEeeccee
Confidence 9999999987763
No 120
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=90.38 E-value=3.7 Score=39.07 Aligned_cols=106 Identities=12% Similarity=0.048 Sum_probs=65.5
Q ss_pred eeEEEEEcCCC-----ceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCC-eEEcCCCCCCCcce
Q 013929 193 HVIYRYSILTN-----SWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT-WKVLPSMKNPRKMC 266 (433)
Q Consensus 193 ~~~~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~p~~r~~~ 266 (433)
..+++|+.... +++.+......-.-.+++.++++|.+.-| ..+.+|+..... +...+.+..+-...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~~~~i~ 133 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDSPFYIT 133 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-BSSSEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheecceEEEE
Confidence 67899999885 55555444344445677788999766644 567888888887 88777665555555
Q ss_pred eEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCC
Q 013929 267 SGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPAR 312 (433)
Q Consensus 267 ~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r 312 (433)
+..+.++.|++---.. .-.+..|+.+..+-..++.-..++
T Consensus 134 sl~~~~~~I~vgD~~~------sv~~~~~~~~~~~l~~va~d~~~~ 173 (321)
T PF03178_consen 134 SLSVFKNYILVGDAMK------SVSLLRYDEENNKLILVARDYQPR 173 (321)
T ss_dssp EEEEETTEEEEEESSS------SEEEEEEETTTE-EEEEEEESS-B
T ss_pred EEeccccEEEEEEccc------CEEEEEEEccCCEEEEEEecCCCc
Confidence 6667788666542221 123456788666677665433333
No 121
>PRK02889 tolB translocation protein TolB; Provisional
Probab=90.03 E-value=22 Score=35.44 Aligned_cols=144 Identities=10% Similarity=-0.044 Sum_probs=74.0
Q ss_pred eeEEEEEcCCCceecCCCCCCCcceeeEEEeCC-EEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEE
Q 013929 193 HVIYRYSILTNSWSSGMRMNAPRCLFGSASLGE-IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM 271 (433)
Q Consensus 193 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 271 (433)
..++++|..+++=+.+...+... ......-++ +|++....++ ..++|.+|..+...+.+..-.. ........-
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~-~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~wSp 293 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSN-SAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQSSG-IDTEPFFSP 293 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCc-cceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCCCC-CCcCeEEcC
Confidence 45899999888755554433211 112222244 5554433222 3678999988877666644221 111112233
Q ss_pred CCE-EEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECC-EEEEEecC--CCe
Q 013929 272 DGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNN-ELYAADYA--DME 347 (433)
Q Consensus 272 ~g~-lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~-~ly~~gg~--~~~ 347 (433)
+|+ |+...... ....++.+|..++..+.+.... ..... ....-+| .|+..... ...
T Consensus 294 DG~~l~f~s~~~-----g~~~Iy~~~~~~g~~~~lt~~g-~~~~~--------------~~~SpDG~~Ia~~s~~~g~~~ 353 (427)
T PRK02889 294 DGRSIYFTSDRG-----GAPQIYRMPASGGAAQRVTFTG-SYNTS--------------PRISPDGKLLAYISRVGGAFK 353 (427)
T ss_pred CCCEEEEEecCC-----CCcEEEEEECCCCceEEEecCC-CCcCc--------------eEECCCCCEEEEEEccCCcEE
Confidence 555 44432221 1235788888877776654211 11110 1222344 44443322 236
Q ss_pred EEEEeCCCCcEEEec
Q 013929 348 VRKYDKERRLWFTIG 362 (433)
Q Consensus 348 i~~yd~~~~~W~~v~ 362 (433)
|+++|..+++.+.+.
T Consensus 354 I~v~d~~~g~~~~lt 368 (427)
T PRK02889 354 LYVQDLATGQVTALT 368 (427)
T ss_pred EEEEECCCCCeEEcc
Confidence 899999988877764
No 122
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=90.01 E-value=31 Score=37.16 Aligned_cols=209 Identities=12% Similarity=0.084 Sum_probs=102.6
Q ss_pred cEEEEeeccceEEEEecCC--CcEEeCCCCCCcc-ccccCCceEE------------------EECCEEEEECCCCCCcc
Q 013929 132 HWVYFSCHLLEWEAFDPIR--RRWMHLPRMTSNE-CFMCSDKESL------------------AVGTELLVFGRELTAHH 190 (433)
Q Consensus 132 ~~l~~~~~~~~~~~yd~~~--~~W~~l~~~p~~~-~~~~~~~~~~------------------~~~~~iyv~GG~~~~~~ 190 (433)
.-+|+++..+.++++|..+ ..|+.-+..+... ..+..++.++ ..+++||+-.
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T------- 267 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPT------- 267 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEec-------
Confidence 3567777777888999886 4587665544321 0111111122 2234666532
Q ss_pred cceeEEEEEcCCCc--eec-----------CCCCCCC--cceeeEEEeCCEEEEEccCCCC----CCcCCceEEEeCCCC
Q 013929 191 ISHVIYRYSILTNS--WSS-----------GMRMNAP--RCLFGSASLGEIAILAGGSDLE----GNILSSAEMYNSETQ 251 (433)
Q Consensus 191 ~~~~~~~yd~~t~~--W~~-----------~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~yd~~t~ 251 (433)
....++.+|..|++ |.. ++..+.. ....+-++.+++||+ |+...+ ......+..||.+|+
T Consensus 268 ~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~TG 346 (764)
T TIGR03074 268 SDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTDEPSGVIRAFDVNTG 346 (764)
T ss_pred CCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-EecccccccccCCCcEEEEEECCCC
Confidence 12247778888775 431 1122211 122334566887776 443111 123456899999998
Q ss_pred C--eEEcC--C-----CCCC----Ccc---eeEEEE---CCEEEEEccccC----------CCCcccceEEEEECCCCc-
Q 013929 252 T--WKVLP--S-----MKNP----RKM---CSGVFM---DGKFYVIGGIGG----------SDSKVLTCGEEYDLETET- 301 (433)
Q Consensus 252 ~--W~~~~--~-----~p~~----r~~---~~~~~~---~g~lyv~GG~~~----------~~~~~~~~v~~yd~~t~~- 301 (433)
+ |+.-. + ++.. +.. .....+ .|.+|+--|... ....+..++...|++|++
T Consensus 347 kl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~ 426 (764)
T TIGR03074 347 ALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKE 426 (764)
T ss_pred cEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCce
Confidence 6 76421 1 1111 110 012233 356776444211 112467789999999875
Q ss_pred -eEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEE---CCE---EEEEecCCCeEEEEeCCCCc
Q 013929 302 -WTEIPNMSPARGGAARGTEMPASAEAPPLVAVV---NNE---LYAADYADMEVRKYDKERRL 357 (433)
Q Consensus 302 -W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~---~~~---ly~~gg~~~~i~~yd~~~~~ 357 (433)
|..-.......... . ...+..+.+ +|+ +.+.+...+.++++|.++++
T Consensus 427 ~W~~Q~~~hD~WD~D-----~----~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 427 RWVFQTVHHDLWDMD-----V----PAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred EEEecccCCcccccc-----c----cCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 75432111100000 0 000122222 552 55556567788888888774
No 123
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=89.56 E-value=14 Score=32.38 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=30.3
Q ss_pred CCEEEEEecCCCeEEEEeCCCCcEEE-----e----ccCCCcccCCCcccEEEEEeCCEEEEEcCC
Q 013929 335 NNELYAADYADMEVRKYDKERRLWFT-----I----GRLPERANSMNGWGLAFRACGDRLIVIGGP 391 (433)
Q Consensus 335 ~~~ly~~gg~~~~i~~yd~~~~~W~~-----v----~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~ 391 (433)
++++|++-| +..|+||..+++... + ..+|... -+++...++++|+|-|.
T Consensus 110 ~~~~yfFkg--~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~i------daa~~~~~~~~yfF~g~ 167 (194)
T cd00094 110 NGKTYFFKG--DKYWRYDEKTQKMDPGYPKLIETDFPGVPDKV------DAAFRWLDGYYYFFKGD 167 (194)
T ss_pred CCEEEEEeC--CEEEEEeCCCccccCCCCcchhhcCCCcCCCc------ceeEEeCCCcEEEEECC
Confidence 689999954 788999976654321 1 1223222 14444445899999885
No 124
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.50 E-value=19 Score=33.98 Aligned_cols=216 Identities=18% Similarity=0.280 Sum_probs=90.0
Q ss_pred CcEEeCCCCCCcc-ccccCCceEEEECCEEEEECCCCCCcccceeEEEEEcCCCceecCC-CCCCCcceeeEEEe-CCEE
Q 013929 151 RRWMHLPRMTSNE-CFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGM-RMNAPRCLFGSASL-GEIA 227 (433)
Q Consensus 151 ~~W~~l~~~p~~~-~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-~~p~~r~~~~~~~~-~~~i 227 (433)
.+|..+..-.... .++. ..+...++..|+.|.. ..++.-.-.-.+|++++ +.+.+...+....+ ++.+
T Consensus 47 ~tW~~~~~~~~~~~~~~l--~~I~f~~~~g~ivG~~-------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~ 117 (302)
T PF14870_consen 47 KTWQPVSLDLDNPFDYHL--NSISFDGNEGWIVGEP-------GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSA 117 (302)
T ss_dssp SS-EE-----S-----EE--EEEEEETTEEEEEEET-------TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEE
T ss_pred ccccccccCCCccceeeE--EEEEecCCceEEEcCC-------ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcE
Confidence 6788775322211 1111 1233457788888732 12333333445899886 22334444444444 5567
Q ss_pred EEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEE-EECCEEEEEccccCCCCcccceEEEEECCCCceEecC
Q 013929 228 ILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIP 306 (433)
Q Consensus 228 yv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~ 306 (433)
+++|.. ..+++=.=.-.+|+.+..-... ....+. .-+|++++++... +-+...|+....|+...
T Consensus 118 ~l~~~~-------G~iy~T~DgG~tW~~~~~~~~g-s~~~~~r~~dG~~vavs~~G-------~~~~s~~~G~~~w~~~~ 182 (302)
T PF14870_consen 118 ELAGDR-------GAIYRTTDGGKTWQAVVSETSG-SINDITRSSDGRYVAVSSRG-------NFYSSWDPGQTTWQPHN 182 (302)
T ss_dssp EEEETT---------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETTS-------SEEEEE-TT-SS-EEEE
T ss_pred EEEcCC-------CcEEEeCCCCCCeeEcccCCcc-eeEeEEECCCCcEEEEECcc-------cEEEEecCCCccceEEc
Confidence 776532 2344443345589886543221 122222 3456666565332 12345788888898876
Q ss_pred CCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEe--CCCCcEEEeccCCCcccCCCccc-EEEEEe-C
Q 013929 307 NMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYD--KERRLWFTIGRLPERANSMNGWG-LAFRAC-G 382 (433)
Q Consensus 307 ~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd--~~~~~W~~v~~lp~~~~~~~~~~-~~~~~~-~ 382 (433)
.....|-.. ....-++.|+++. ..+.+..=+ -...+|.+-. .|... .+++ ..++.. +
T Consensus 183 r~~~~riq~--------------~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~-~~~~~---~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 183 RNSSRRIQS--------------MGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPI-IPIKT---NGYGILDLAYRPP 243 (302)
T ss_dssp --SSS-EEE--------------EEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B--TTSS-----S-EEEEEESSS
T ss_pred cCccceehh--------------ceecCCCCEEEEe-CCcEEEEccCCCCcccccccc-CCccc---CceeeEEEEecCC
Confidence 443333331 2233467888875 445555555 3445787732 22222 2244 333333 5
Q ss_pred CEEEEEcCCCCCCCCeeEEEEeecCCCCCCceEecc
Q 013929 383 DRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLAR 418 (433)
Q Consensus 383 ~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~W~~v~~ 418 (433)
+.+++.||... .+.-...-.+|+....
T Consensus 244 ~~~wa~gg~G~---------l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 244 NEIWAVGGSGT---------LLVSTDGGKTWQKDRV 270 (302)
T ss_dssp S-EEEEESTT----------EEEESSTTSS-EE-GG
T ss_pred CCEEEEeCCcc---------EEEeCCCCccceECcc
Confidence 78999998632 3333335678988754
No 125
>PRK13684 Ycf48-like protein; Provisional
Probab=89.49 E-value=20 Score=34.34 Aligned_cols=162 Identities=14% Similarity=0.142 Sum_probs=80.8
Q ss_pred EEEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEE-EeCCCCCeEEcCCCCCCCcceeEEE-EC
Q 013929 195 IYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEM-YNSETQTWKVLPSMKNPRKMCSGVF-MD 272 (433)
Q Consensus 195 ~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-yd~~t~~W~~~~~~p~~r~~~~~~~-~~ 272 (433)
+++=+-.-++|+.+.... .-..+.+....+..|++.|..+. ++. .|....+|+.+.. +..+.-..++. -+
T Consensus 154 i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G~------i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~ 225 (334)
T PRK13684 154 IYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRGN------FYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPD 225 (334)
T ss_pred EEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCce------EEEEcCCCCCeEEEeeC-CCcccceeeeEcCC
Confidence 454444456899876433 22334444444444555443321 222 2344457988754 33344444443 46
Q ss_pred CEEEEEccccCCCCcccceEEEEE-C-CCCceEecCCCCCC-C-CCCCCCCcCCCCcCCCCEEEEE-CCEEEEEecCCCe
Q 013929 273 GKFYVIGGIGGSDSKVLTCGEEYD-L-ETETWTEIPNMSPA-R-GGAARGTEMPASAEAPPLVAVV-NNELYAADYADME 347 (433)
Q Consensus 273 g~lyv~GG~~~~~~~~~~~v~~yd-~-~t~~W~~~~~~p~~-r-~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~gg~~~~ 347 (433)
++++++|... ...+. . .-.+|+.+.. |.. . ... .+++.. ++.++++|. .+.
T Consensus 226 g~~~~vg~~G---------~~~~~s~d~G~sW~~~~~-~~~~~~~~l-------------~~v~~~~~~~~~~~G~-~G~ 281 (334)
T PRK13684 226 GNLWMLARGG---------QIRFNDPDDLESWSKPII-PEITNGYGY-------------LDLAYRTPGEIWAGGG-NGT 281 (334)
T ss_pred CCEEEEecCC---------EEEEccCCCCCccccccC-Cccccccce-------------eeEEEcCCCCEEEEcC-CCe
Confidence 7888886432 12232 2 2247987642 211 1 111 123333 667888764 455
Q ss_pred EEEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCC
Q 013929 348 VRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGP 391 (433)
Q Consensus 348 i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~ 391 (433)
++.-.....+|+.+...+..... +...+...++++|++|..
T Consensus 282 v~~S~d~G~tW~~~~~~~~~~~~---~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 282 LLVSKDGGKTWEKDPVGEEVPSN---FYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred EEEeCCCCCCCeECCcCCCCCcc---eEEEEEeCCCceEEECCC
Confidence 55555556799997532211111 113333457788888864
No 126
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=89.12 E-value=44 Score=37.64 Aligned_cols=212 Identities=13% Similarity=0.071 Sum_probs=105.5
Q ss_pred EEEEe-eccceEEEEecCCCcEEeCCCCCC--------ccccccCCceEEEE--CCEEEEECCCCCCcccceeEEEEEcC
Q 013929 133 WVYFS-CHLLEWEAFDPIRRRWMHLPRMTS--------NECFMCSDKESLAV--GTELLVFGRELTAHHISHVIYRYSIL 201 (433)
Q Consensus 133 ~l~~~-~~~~~~~~yd~~~~~W~~l~~~p~--------~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~ 201 (433)
-+|+. ...+.+.++|+....=..+..... ....+...+.++.. ++.|||.-.. .+.+.++|+.
T Consensus 581 ~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~------n~~Ir~id~~ 654 (1057)
T PLN02919 581 RLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE------NHALREIDFV 654 (1057)
T ss_pred eEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC------CceEEEEecC
Confidence 35554 345678888887543333332110 00111112334443 4578887543 2357888887
Q ss_pred CCceecCCCC-------CC--------CcceeeEEEe--CCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCC-----
Q 013929 202 TNSWSSGMRM-------NA--------PRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSM----- 259 (433)
Q Consensus 202 t~~W~~~~~~-------p~--------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~----- 259 (433)
++.=+.+..- .. -...+.+++. ++.|||... ..+.+++||+.++....+..-
T Consensus 655 ~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~------~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 655 NETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA------GQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred CCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC------CCCeEEEEECCCCeEEEEecCCcccc
Confidence 7665443210 00 0111233333 678998742 235688899887765433210
Q ss_pred -----CC---CCcceeEEEE-C-CEEEEEccccCCCCcccceEEEEECCCCceEecCC----CCCC--CCCCCCCCcCCC
Q 013929 260 -----KN---PRKMCSGVFM-D-GKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPN----MSPA--RGGAARGTEMPA 323 (433)
Q Consensus 260 -----p~---~r~~~~~~~~-~-g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~----~p~~--r~~~~~~~~~~~ 323 (433)
.. ...-.+.++. + +.||+.-.. .+.|.+||+.++....+.. .+.. ..+..-+....+
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSE-------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECC-------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 00 0111223332 3 458888433 2568899998766432210 0000 000000000000
Q ss_pred CcCCCCEEE-EECCEEEEEecCCCeEEEEeCCCCcEEEecc
Q 013929 324 SAEAPPLVA-VVNNELYAADYADMEVRKYDKERRLWFTIGR 363 (433)
Q Consensus 324 ~~~~~~~~~-~~~~~ly~~gg~~~~i~~yd~~~~~W~~v~~ 363 (433)
....+.+++ .-+|.||+....++.|.+||+.++....+..
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG 842 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG 842 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec
Confidence 011222333 3467899999888999999999988876653
No 127
>PRK04922 tolB translocation protein TolB; Provisional
Probab=89.09 E-value=26 Score=34.96 Aligned_cols=102 Identities=11% Similarity=0.022 Sum_probs=57.2
Q ss_pred CCceEEEeCCCCCeEEcCCCCCCCcceeEEEECC-EEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCC
Q 013929 240 LSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDG-KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARG 318 (433)
Q Consensus 240 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g-~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~ 318 (433)
...++++|..+++-+.+...+..-. .....-+| +|++....++ ...++++|+.++.-+.+.........
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g-----~~~Iy~~d~~~g~~~~lt~~~~~~~~---- 296 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDG-----NPEIYVMDLGSRQLTRLTNHFGIDTE---- 296 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCC-----CceEEEEECCCCCeEECccCCCCccc----
Confidence 3578999999988777765442211 11222345 4554433221 24689999999887666432211111
Q ss_pred CcCCCCcCCCCEEEEECCE-EEEEecC--CCeEEEEeCCCCcEEEec
Q 013929 319 TEMPASAEAPPLVAVVNNE-LYAADYA--DMEVRKYDKERRLWFTIG 362 (433)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~-ly~~gg~--~~~i~~yd~~~~~W~~v~ 362 (433)
....-+++ |++.... ...++.+|..+++.+.+.
T Consensus 297 -----------~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 297 -----------PTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT 332 (433)
T ss_pred -----------eEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee
Confidence 12233444 4443322 246899999888887765
No 128
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.73 E-value=24 Score=34.24 Aligned_cols=192 Identities=14% Similarity=0.075 Sum_probs=101.7
Q ss_pred cceEEEEecCCCc--EEeCCCCCCccccccCCceEEEECCEEEEECCCCCCcccceeEEEEEcCCC--ceecCCCCCCCc
Q 013929 140 LLEWEAFDPIRRR--WMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTN--SWSSGMRMNAPR 215 (433)
Q Consensus 140 ~~~~~~yd~~~~~--W~~l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~r 215 (433)
...++++|+.+.+ |...... .... ........+|+||+-... ..+++||..++ .|+.--+.. ++
T Consensus 77 ~G~i~A~d~~~g~~~W~~~~~~---~~~~-~~~~~~~~~G~i~~g~~~-------g~~y~ld~~~G~~~W~~~~~~~-~~ 144 (370)
T COG1520 77 DGNIFALNPDTGLVKWSYPLLG---AVAQ-LSGPILGSDGKIYVGSWD-------GKLYALDASTGTLVWSRNVGGS-PY 144 (370)
T ss_pred CCcEEEEeCCCCcEEecccCcC---ccee-ccCceEEeCCeEEEeccc-------ceEEEEECCCCcEEEEEecCCC-eE
Confidence 3468889998866 8654332 0000 111223347787765433 16899999766 576432222 44
Q ss_pred ceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCC--CeEEcCCC-CCCCcceeEEEECCEEEEEccccCCCCcccceE
Q 013929 216 CLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQ--TWKVLPSM-KNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCG 292 (433)
Q Consensus 216 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~-p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v 292 (433)
..-..+..++.+|+.- ....++.+|..+. .|+.-.+. ...+.....+..++.+|+-... ....+
T Consensus 145 ~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~------~~~~~ 211 (370)
T COG1520 145 YASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG------YDGIL 211 (370)
T ss_pred EecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC------CcceE
Confidence 4445555677777652 1356888888865 48753332 2223333333667777776321 11257
Q ss_pred EEEECCCCc--eEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCC--cEEEecc
Q 013929 293 EEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERR--LWFTIGR 363 (433)
Q Consensus 293 ~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~--~W~~v~~ 363 (433)
+.+|+++++ |+.-...+..+.... .. .......+.+++.+|... ..+.+.++|..++ .|+.-..
T Consensus 212 ~a~~~~~G~~~w~~~~~~~~~~~~~~---~~---~~~~~~~v~v~~~~~~~~-~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 212 YALNAEDGTLKWSQKVSQTIGRTAIS---TT---PAVDGGPVYVDGGVYAGS-YGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EEEEccCCcEeeeeeeecccCccccc---cc---ccccCceEEECCcEEEEe-cCCeEEEEEcCCCceEEEEecc
Confidence 889997764 775322222221100 00 001124556666665443 3455888888766 4876443
No 129
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=88.48 E-value=4.9 Score=38.23 Aligned_cols=71 Identities=27% Similarity=0.269 Sum_probs=41.2
Q ss_pred CCEEEEEc--cccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEEC-C--EEEEEecCCC
Q 013929 272 DGKFYVIG--GIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVN-N--ELYAADYADM 346 (433)
Q Consensus 272 ~g~lyv~G--G~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~--~ly~~gg~~~ 346 (433)
.++||+.- |..+.....-.+||+||+++.+=-.--++..+.. ++.+.+ . .||.+....+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~----------------Si~Vsqd~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPID----------------SIAVSQDDKPLLYALSAGDG 312 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEES----------------EEEEESSSS-EEEEEETTTT
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccc----------------eEEEccCCCcEEEEEcCCCC
Confidence 57899873 3344455677889999999986322112211111 344443 2 5777766678
Q ss_pred eEEEEeCCCCcE
Q 013929 347 EVRKYDKERRLW 358 (433)
Q Consensus 347 ~i~~yd~~~~~W 358 (433)
.+.+||..+++=
T Consensus 313 ~l~v~D~~tGk~ 324 (342)
T PF06433_consen 313 TLDVYDAATGKL 324 (342)
T ss_dssp EEEEEETTT--E
T ss_pred eEEEEeCcCCcE
Confidence 999999999853
No 130
>PTZ00421 coronin; Provisional
Probab=87.77 E-value=34 Score=34.81 Aligned_cols=62 Identities=15% Similarity=0.091 Sum_probs=35.1
Q ss_pred CEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCc-ceeEE-EECCEEEEEccccCCCCcccceEEEEECCCCc
Q 013929 225 EIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRK-MCSGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETET 301 (433)
Q Consensus 225 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~-~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~ 301 (433)
+.+++.||.+ ..+.+||..++.-.. .+..... -.++. ..+|.+++.|+.+ ..+.+||+.++.
T Consensus 138 ~~iLaSgs~D------gtVrIWDl~tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~D-------g~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGAD------MVVNVWDVERGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKD-------KKLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCC------CEEEEEECCCCeEEE--EEcCCCCceEEEEEECCCCEEEEecCC-------CEEEEEECCCCc
Confidence 3567777654 347889988764221 1111111 11222 2367777777765 247789998765
No 131
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=87.76 E-value=23 Score=32.88 Aligned_cols=130 Identities=15% Similarity=0.125 Sum_probs=70.0
Q ss_pred eEEEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEE-EC
Q 013929 194 VIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF-MD 272 (433)
Q Consensus 194 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~ 272 (433)
.+..||..++.-+.. +.....-..++..+..=.+.||.++ .+-+||..++.=..+..--.+-. .... ..
T Consensus 36 slrlYdv~~~~l~~~--~~~~~plL~c~F~d~~~~~~G~~dg------~vr~~Dln~~~~~~igth~~~i~--ci~~~~~ 105 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLK--FKHGAPLLDCAFADESTIVTGGLDG------QVRRYDLNTGNEDQIGTHDEGIR--CIEYSYE 105 (323)
T ss_pred cEEEEeccchhhhhh--eecCCceeeeeccCCceEEEeccCc------eEEEEEecCCcceeeccCCCceE--EEEeecc
Confidence 467788777633211 1111112355556666666777654 48899999886555543222211 1111 22
Q ss_pred CEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEe
Q 013929 273 GKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYD 352 (433)
Q Consensus 273 g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd 352 (433)
...+|.||++ ..|..+|+.... .+...-.+..- .+..+.+...++|.....+.+||
T Consensus 106 ~~~vIsgsWD-------~~ik~wD~R~~~--~~~~~d~~kkV---------------y~~~v~g~~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 106 VGCVISGSWD-------KTIKFWDPRNKV--VVGTFDQGKKV---------------YCMDVSGNRLVVGTSDRKVLIYD 161 (323)
T ss_pred CCeEEEcccC-------ccEEEEeccccc--cccccccCceE---------------EEEeccCCEEEEeecCceEEEEE
Confidence 3456778877 346778886511 01111111111 23445566677777888999999
Q ss_pred CCCCc
Q 013929 353 KERRL 357 (433)
Q Consensus 353 ~~~~~ 357 (433)
..+..
T Consensus 162 LRn~~ 166 (323)
T KOG1036|consen 162 LRNLD 166 (323)
T ss_pred ccccc
Confidence 98753
No 132
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=87.51 E-value=23 Score=32.46 Aligned_cols=157 Identities=15% Similarity=0.055 Sum_probs=87.4
Q ss_pred CceEEEECCEEEEECCCCCCcccceeEEEEEcCCCce---ecCCCCC---------CCcceeeEEEeCCEEEEEccCCCC
Q 013929 169 DKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSW---SSGMRMN---------APRCLFGSASLGEIAILAGGSDLE 236 (433)
Q Consensus 169 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W---~~~~~~p---------~~r~~~~~~~~~~~iyv~GG~~~~ 236 (433)
+.+.++.+|.+|.--. ..+.+..||..+++- ..++... .+-...-.++-++-|+|+-.....
T Consensus 71 GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~ 144 (250)
T PF02191_consen 71 GTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN 144 (250)
T ss_pred cCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC
Confidence 3345667777776532 456799999999864 4454321 112223445556677777554432
Q ss_pred CCcCCceEEEeCCCC----CeEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCC-
Q 013929 237 GNILSSAEMYNSETQ----TWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPA- 311 (433)
Q Consensus 237 ~~~~~~~~~yd~~t~----~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~- 311 (433)
. ..-.+-..|+.+- +|.. ..+. +....+..+=|.||++-..+.. ...-.++||+.+++=..+. ++..
T Consensus 145 ~-g~ivvskld~~tL~v~~tw~T--~~~k-~~~~naFmvCGvLY~~~s~~~~---~~~I~yafDt~t~~~~~~~-i~f~~ 216 (250)
T PF02191_consen 145 N-GNIVVSKLDPETLSVEQTWNT--SYPK-RSAGNAFMVCGVLYATDSYDTR---DTEIFYAFDTYTGKEEDVS-IPFPN 216 (250)
T ss_pred C-CcEEEEeeCcccCceEEEEEe--ccCc-hhhcceeeEeeEEEEEEECCCC---CcEEEEEEECCCCceecee-eeecc
Confidence 1 1233556677653 5653 2222 2222344566889999665521 1344588999988766443 3322
Q ss_pred CCCCCCCCcCCCCcCCCCEEEEE---CCEEEEEecCCCeEEEEeCC
Q 013929 312 RGGAARGTEMPASAEAPPLVAVV---NNELYAADYADMEVRKYDKE 354 (433)
Q Consensus 312 r~~~~~~~~~~~~~~~~~~~~~~---~~~ly~~gg~~~~i~~yd~~ 354 (433)
+... .+.+.. +.+||+. ..+....|+..
T Consensus 217 ~~~~-------------~~~l~YNP~dk~LY~w--d~G~~v~Y~v~ 247 (250)
T PF02191_consen 217 PYGN-------------ISMLSYNPRDKKLYAW--DNGYQVTYDVR 247 (250)
T ss_pred ccCc-------------eEeeeECCCCCeEEEE--ECCeEEEEEEE
Confidence 2221 133333 5789988 45677777653
No 133
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=86.94 E-value=31 Score=33.47 Aligned_cols=136 Identities=13% Similarity=0.152 Sum_probs=73.5
Q ss_pred eeEEEEEcCCCceecCCCCCCCcceeeEEEe-CCEEEEEccCCCCCCcCCceEEEeCCC---CCeEEcCCCCCCCcceeE
Q 013929 193 HVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSET---QTWKVLPSMKNPRKMCSG 268 (433)
Q Consensus 193 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t---~~W~~~~~~p~~r~~~~~ 268 (433)
..+..+|..|+.-...-+-..+-+..+++-+ ++.=+|.|+.+ ..+..+|..- ..|+-+.. ++-.--+
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d------r~i~~wdlDgn~~~~W~gvr~---~~v~dla 361 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD------RTIIMWDLDGNILGNWEGVRD---PKVHDLA 361 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC------CcEEEecCCcchhhccccccc---ceeEEEE
Confidence 3478888888775543222222333333333 77778888765 3456666654 35865543 3434444
Q ss_pred EEECCE-EEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCe
Q 013929 269 VFMDGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADME 347 (433)
Q Consensus 269 ~~~~g~-lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~ 347 (433)
...+|+ +++++ .+ ..+..|+.++..=..+-....+... ....-++++.++.=....
T Consensus 362 it~Dgk~vl~v~-~d-------~~i~l~~~e~~~dr~lise~~~its---------------~~iS~d~k~~LvnL~~qe 418 (519)
T KOG0293|consen 362 ITYDGKYVLLVT-VD-------KKIRLYNREARVDRGLISEEQPITS---------------FSISKDGKLALVNLQDQE 418 (519)
T ss_pred EcCCCcEEEEEe-cc-------cceeeechhhhhhhccccccCceeE---------------EEEcCCCcEEEEEcccCe
Confidence 455665 44443 22 2345676665432222111111111 123346788887767789
Q ss_pred EEEEeCCCCcEEEec
Q 013929 348 VRKYDKERRLWFTIG 362 (433)
Q Consensus 348 i~~yd~~~~~W~~v~ 362 (433)
+..||.+ .|+.+.
T Consensus 419 i~LWDl~--e~~lv~ 431 (519)
T KOG0293|consen 419 IHLWDLE--ENKLVR 431 (519)
T ss_pred eEEeecc--hhhHHH
Confidence 9999988 666554
No 134
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=86.42 E-value=8.1 Score=38.91 Aligned_cols=120 Identities=13% Similarity=0.021 Sum_probs=62.2
Q ss_pred CCcceeeEEEe--CCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccc
Q 013929 213 APRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLT 290 (433)
Q Consensus 213 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~ 290 (433)
.|+.+..++.. +-.||+.|- -.++|++|++.+.|-..-..-.+--++..+.--..|+.+||.++
T Consensus 132 IP~~GRDm~y~~~scDly~~gs-------g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g------- 197 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS-------GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDG------- 197 (703)
T ss_pred cCcCCccccccCCCccEEEeec-------CcceEEEEccccccccccccccccceeeeecCccceEEecccCc-------
Confidence 34444444433 345777752 46799999999988432111111112222222245777787653
Q ss_pred eEEEEECCCCceEe-c------CCCCCCCCCCCCCCcCCCCcCCCCEEEEEC-CEEEEEecCCCeEEEEeCCCCc
Q 013929 291 CGEEYDLETETWTE-I------PNMSPARGGAARGTEMPASAEAPPLVAVVN-NELYAADYADMEVRKYDKERRL 357 (433)
Q Consensus 291 ~v~~yd~~t~~W~~-~------~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~ly~~gg~~~~i~~yd~~~~~ 357 (433)
.|+.||+.+..--. + ...|..-.. +++ .++..-| |--+.+|...+.+++||+.+.+
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~-------~sv----Tal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASSVNSHPGGDAA-------PSV----TALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred eEEEecchhhhhheeeecccccCCCcccccc-------Ccc----eEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 47889987764211 1 111211111 110 1233334 3444467778899999987653
No 135
>PRK03629 tolB translocation protein TolB; Provisional
Probab=85.81 E-value=40 Score=33.60 Aligned_cols=147 Identities=10% Similarity=-0.095 Sum_probs=72.8
Q ss_pred cceeEEEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEE
Q 013929 191 ISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF 270 (433)
Q Consensus 191 ~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~ 270 (433)
....+++.|.....=+.+..-+.. ......+-+++.+++..... ....++++|..+++-+.+...+..-.. ....
T Consensus 177 ~~~~l~~~d~dg~~~~~lt~~~~~-~~~p~wSPDG~~la~~s~~~---g~~~i~i~dl~~G~~~~l~~~~~~~~~-~~~S 251 (429)
T PRK03629 177 FPYELRVSDYDGYNQFVVHRSPQP-LMSPAWSPDGSKLAYVTFES---GRSALVIQTLANGAVRQVASFPRHNGA-PAFS 251 (429)
T ss_pred cceeEEEEcCCCCCCEEeecCCCc-eeeeEEcCCCCEEEEEEecC---CCcEEEEEECCCCCeEEccCCCCCcCC-eEEC
Confidence 345688888764432222211111 11122223443333322211 135689999988877766654432111 1222
Q ss_pred ECCE-EEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCE-EEEEecC--CC
Q 013929 271 MDGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNE-LYAADYA--DM 346 (433)
Q Consensus 271 ~~g~-lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~-ly~~gg~--~~ 346 (433)
-+|+ |++.....+ ...++.+|+.++..+.+......... ....-+|+ |+..... ..
T Consensus 252 PDG~~La~~~~~~g-----~~~I~~~d~~tg~~~~lt~~~~~~~~---------------~~wSPDG~~I~f~s~~~g~~ 311 (429)
T PRK03629 252 PDGSKLAFALSKTG-----SLNLYVMDLASGQIRQVTDGRSNNTE---------------PTWFPDSQNLAYTSDQAGRP 311 (429)
T ss_pred CCCCEEEEEEcCCC-----CcEEEEEECCCCCEEEccCCCCCcCc---------------eEECCCCCEEEEEeCCCCCc
Confidence 3454 554432221 23589999999888777543221111 12233444 4333211 24
Q ss_pred eEEEEeCCCCcEEEec
Q 013929 347 EVRKYDKERRLWFTIG 362 (433)
Q Consensus 347 ~i~~yd~~~~~W~~v~ 362 (433)
.++.+|..++.-+++.
T Consensus 312 ~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 312 QVYKVNINGGAPQRIT 327 (429)
T ss_pred eEEEEECCCCCeEEee
Confidence 7888899888776664
No 136
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=84.32 E-value=65 Score=34.77 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=24.6
Q ss_pred eeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCC--eEEcCCC
Q 013929 218 FGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSM 259 (433)
Q Consensus 218 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~ 259 (433)
.+-++++++||+... ...++.+|..|++ |+.-+..
T Consensus 188 ~TPlvvgg~lYv~t~-------~~~V~ALDa~TGk~lW~~d~~~ 224 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP-------HNKVIALDAATGKEKWKFDPKL 224 (764)
T ss_pred cCCEEECCEEEEECC-------CCeEEEEECCCCcEEEEEcCCC
Confidence 345677999999832 4568888988765 8765543
No 137
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=84.17 E-value=33 Score=31.25 Aligned_cols=210 Identities=13% Similarity=0.106 Sum_probs=92.5
Q ss_pred ceEEEECCEEEEECCC-CCCcccceeEEEEEc---CCCceec--CCCCCC-------CcceeeEEEeCCEEEEEccCCCC
Q 013929 170 KESLAVGTELLVFGRE-LTAHHISHVIYRYSI---LTNSWSS--GMRMNA-------PRCLFGSASLGEIAILAGGSDLE 236 (433)
Q Consensus 170 ~~~~~~~~~iyv~GG~-~~~~~~~~~~~~yd~---~t~~W~~--~~~~p~-------~r~~~~~~~~~~~iyv~GG~~~~ 236 (433)
.++-++++++|.+=-. .-........+.||- ..+.|++ ++..|. .-.-|+.+.+++.=|.+|-.+++
T Consensus 78 mSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD 157 (367)
T PF12217_consen 78 MSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGD 157 (367)
T ss_dssp B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-S
T ss_pred eeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCC
Confidence 3456679999876321 111123333455553 4677863 444444 34568888888888888866654
Q ss_pred CCcCCceEEEeCCC------CCeEEcCCC-CCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCC
Q 013929 237 GNILSSAEMYNSET------QTWKVLPSM-KNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMS 309 (433)
Q Consensus 237 ~~~~~~~~~yd~~t------~~W~~~~~~-p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p 309 (433)
-.+..--..|-+.. -.=+.++.- ...-...++-.++|.+|+.-... .....-..+.+-+..-..|+.+.- |
T Consensus 158 ~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt-~~~~~GS~L~rs~d~G~~w~slrf-p 235 (367)
T PF12217_consen 158 VSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGT-LPTNPGSSLHRSDDNGQNWSSLRF-P 235 (367)
T ss_dssp SSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES--TTS---EEEEESSTTSS-EEEE--T
T ss_pred CCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCc-CCCCCcceeeeecccCCchhhccc-c
Confidence 32222122222211 011222221 11112234457899999986433 122344556666777778988742 2
Q ss_pred CCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCC------------------CeEEE-------EeCCCCcEEEecc-
Q 013929 310 PARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD------------------MEVRK-------YDKERRLWFTIGR- 363 (433)
Q Consensus 310 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~------------------~~i~~-------yd~~~~~W~~v~~- 363 (433)
...... ....+..++.||+||... -.... +.++.-+|..+..
T Consensus 236 ~nvHht------------nlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdq 303 (367)
T PF12217_consen 236 NNVHHT------------NLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQ 303 (367)
T ss_dssp T---SS---------------EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-
T ss_pred cccccc------------CCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecc
Confidence 221110 013678899999998411 11111 3555667877752
Q ss_pred CCCcccCCCcccEE-EEEeCCEE-EEEcCCCC
Q 013929 364 LPERANSMNGWGLA-FRACGDRL-IVIGGPKA 393 (433)
Q Consensus 364 lp~~~~~~~~~~~~-~~~~~~~l-~v~GG~~~ 393 (433)
+-+...-.++.|.+ ++.-++.| |+|||.+.
T Consensus 304 IYqG~ivNSavGVGSv~~KD~~lyy~FGgED~ 335 (367)
T PF12217_consen 304 IYQGGIVNSAVGVGSVVVKDGWLYYIFGGEDF 335 (367)
T ss_dssp BB--SSS---SEEEEEEEETTEEEEEEEEB-S
T ss_pred eeccccccccccceeEEEECCEEEEEecCccc
Confidence 22222212234443 44557766 58999854
No 138
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=83.98 E-value=45 Score=32.65 Aligned_cols=123 Identities=11% Similarity=0.174 Sum_probs=69.3
Q ss_pred eeeEEEe-CCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEE-CCEEEEEccccCCCCcccceEEE
Q 013929 217 LFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGKFYVIGGIGGSDSKVLTCGEE 294 (433)
Q Consensus 217 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~ 294 (433)
.++.+.+ +|.|+..|-.+ ..+-+||...+. .++..|..-..-....+ ++--|++-+.+. .++..
T Consensus 350 ~ts~~fHpDgLifgtgt~d------~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add------~~V~l 415 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD------GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD------GSVKL 415 (506)
T ss_pred eEEeeEcCCceEEeccCCC------ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC------CeEEE
Confidence 3444444 66676665433 447889998876 66666653322233333 333444433321 23677
Q ss_pred EECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCcEEEeccCCCcc
Q 013929 295 YDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKERRLWFTIGRLPERA 368 (433)
Q Consensus 295 yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~i~~yd~~~~~W~~v~~lp~~~ 368 (433)
||+...+ .++.++.+-... ...+.+ -|...+++|..-.|+.|+..++.|+++..++...
T Consensus 416 wDLRKl~--n~kt~~l~~~~~-------------v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s 476 (506)
T KOG0289|consen 416 WDLRKLK--NFKTIQLDEKKE-------------VNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS 476 (506)
T ss_pred EEehhhc--ccceeecccccc-------------ceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc
Confidence 8887654 233222221110 012222 3666677777778888899999999998777654
No 139
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=83.53 E-value=63 Score=34.02 Aligned_cols=153 Identities=16% Similarity=0.170 Sum_probs=81.0
Q ss_pred EeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEE--EECCEEEEEccccCCCCcccceEEEEECCC
Q 013929 222 SLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV--FMDGKFYVIGGIGGSDSKVLTCGEEYDLET 299 (433)
Q Consensus 222 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~--~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t 299 (433)
.-++.+++.|+-++ .+-+||..++--.. ....+-.+++++ ...|+..+....+| ++-+||+..
T Consensus 359 SpDgq~iaTG~eDg------KVKvWn~~SgfC~v--TFteHts~Vt~v~f~~~g~~llssSLDG-------tVRAwDlkR 423 (893)
T KOG0291|consen 359 SPDGQLIATGAEDG------KVKVWNTQSGFCFV--TFTEHTSGVTAVQFTARGNVLLSSSLDG-------TVRAWDLKR 423 (893)
T ss_pred CCCCcEEEeccCCC------cEEEEeccCceEEE--EeccCCCceEEEEEEecCCEEEEeecCC-------eEEeeeecc
Confidence 33777888887654 36677766643211 112223333333 23555555544442 356677765
Q ss_pred Cc-eEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEEC--CEEEEEecCC-CeEEEEeCCCCcEEEeccCCCcccCCCccc
Q 013929 300 ET-WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVN--NELYAADYAD-MEVRKYDKERRLWFTIGRLPERANSMNGWG 375 (433)
Q Consensus 300 ~~-W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~ly~~gg~~-~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~ 375 (433)
-. ++.+. .|.+... +.+++| |.|.+.|... -+|++|+.+|++-..+-.=...+. .+
T Consensus 424 YrNfRTft-~P~p~Qf---------------scvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPV----s~ 483 (893)
T KOG0291|consen 424 YRNFRTFT-SPEPIQF---------------SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPV----SG 483 (893)
T ss_pred cceeeeec-CCCceee---------------eEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcc----ee
Confidence 32 33332 2333333 566777 8888888644 589999999998666522112111 01
Q ss_pred EEEEEeCCEEEEEcCCCCCCCCeeEEEEeecCCCCCCceEeccc
Q 013929 376 LAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARK 419 (433)
Q Consensus 376 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~W~~v~~~ 419 (433)
.++ ...+.+++-|-.+ ..+.+|+. -.+|.++.++
T Consensus 484 l~f-~~~~~~LaS~SWD------kTVRiW~i---f~s~~~vEtl 517 (893)
T KOG0291|consen 484 LSF-SPDGSLLASGSWD------KTVRIWDI---FSSSGTVETL 517 (893)
T ss_pred eEE-ccccCeEEecccc------ceEEEEEe---eccCceeeeE
Confidence 222 2344566666553 34777766 2445555444
No 140
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=83.30 E-value=49 Score=32.58 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=31.6
Q ss_pred EEEECCEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCccee--eEEE-eCCEEEEEccCCCC
Q 013929 172 SLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLF--GSAS-LGEIAILAGGSDLE 236 (433)
Q Consensus 172 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~--~~~~-~~~~iyv~GG~~~~ 236 (433)
++..+..-|++||. ...++|+|...|+.--.+- .+.+.. +... .++..++-||.++.
T Consensus 87 l~s~n~G~~l~ag~-----i~g~lYlWelssG~LL~v~---~aHYQ~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 87 LASSNLGYFLLAGT-----ISGNLYLWELSSGILLNVL---SAHYQSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred eecCCCceEEEeec-----ccCcEEEEEeccccHHHHH---HhhccceeEEEEeCCCcEEEecCCCcc
Confidence 44455667777774 3456899888887643221 111111 2222 26677777776643
No 141
>smart00284 OLF Olfactomedin-like domains.
Probab=82.74 E-value=39 Score=30.98 Aligned_cols=157 Identities=17% Similarity=0.136 Sum_probs=84.8
Q ss_pred CceEEEECCEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCC------------cceeeEEEeCCEEEEEccCCCC
Q 013929 169 DKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAP------------RCLFGSASLGEIAILAGGSDLE 236 (433)
Q Consensus 169 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~------------r~~~~~~~~~~~iyv~GG~~~~ 236 (433)
+.+.++.+|.+|.--. ..+.+..||..+++-.....+|.+ -...-.++-.+-|+|+=....+
T Consensus 76 GtG~VVYngslYY~~~------~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~ 149 (255)
T smart00284 76 GTGVVVYNGSLYFNKF------NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN 149 (255)
T ss_pred cccEEEECceEEEEec------CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC
Confidence 4456788888887543 345799999999975433333322 1223445556667776333222
Q ss_pred CCcCCceEEEeCCCC----CeEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCC-
Q 013929 237 GNILSSAEMYNSETQ----TWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPA- 311 (433)
Q Consensus 237 ~~~~~~~~~yd~~t~----~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~- 311 (433)
. ..-.+-..|+.+- +|.. ..+. +...-+..+=|.||++-... .....-.++||+.+++=..+ .+|..
T Consensus 150 ~-g~ivvSkLnp~tL~ve~tW~T--~~~k-~sa~naFmvCGvLY~~~s~~---~~~~~I~yayDt~t~~~~~~-~i~f~n 221 (255)
T smart00284 150 A-GKIVISKLNPATLTIENTWIT--TYNK-RSASNAFMICGILYVTRSLG---SKGEKVFYAYDTNTGKEGHL-DIPFEN 221 (255)
T ss_pred C-CCEEEEeeCcccceEEEEEEc--CCCc-ccccccEEEeeEEEEEccCC---CCCcEEEEEEECCCCcccee-eeeecc
Confidence 1 1223456677654 4654 2221 22223445568899984322 12233458899998764332 33332
Q ss_pred CCCCCCCCcCCCCcCCCCEEEEE---CCEEEEEecCCCeEEEEeCC
Q 013929 312 RGGAARGTEMPASAEAPPLVAVV---NNELYAADYADMEVRKYDKE 354 (433)
Q Consensus 312 r~~~~~~~~~~~~~~~~~~~~~~---~~~ly~~gg~~~~i~~yd~~ 354 (433)
+..+ .++.-. +.+||+. ..+.+..||..
T Consensus 222 ~y~~-------------~s~l~YNP~d~~LY~w--dng~~l~Y~v~ 252 (255)
T smart00284 222 MYEY-------------ISMLDYNPNDRKLYAW--NNGHLVHYDIA 252 (255)
T ss_pred cccc-------------ceeceeCCCCCeEEEE--eCCeEEEEEEE
Confidence 2221 123333 5788888 46677777753
No 142
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=81.89 E-value=60 Score=32.64 Aligned_cols=134 Identities=13% Similarity=0.117 Sum_probs=70.9
Q ss_pred ceeEEEEEcCCC-c-eecCCCCCCCcceeeEEE-eCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeE
Q 013929 192 SHVIYRYSILTN-S-WSSGMRMNAPRCLFGSAS-LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSG 268 (433)
Q Consensus 192 ~~~~~~yd~~t~-~-W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 268 (433)
...+.+||...+ . -+.+...+... ++++. ..+.+++.|+.++ .+.++|..+.+=.. .+......-++
T Consensus 224 D~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D~------tvriWd~~~~~~~~--~l~~hs~~is~ 293 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDDG------TVRIWDVRTGECVR--KLKGHSDGISG 293 (456)
T ss_pred CceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCCC------cEEEEeccCCeEEE--eeeccCCceEE
Confidence 345788888443 2 23444333333 33332 2458888887664 48889998854322 22222222222
Q ss_pred --EEECCEEEEEccccCCCCcccceEEEEECCCCceE---ecCCCCCCCCCCCCCCcCCCCcCCCCEEEEE-CCEEEEEe
Q 013929 269 --VFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWT---EIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAAD 342 (433)
Q Consensus 269 --~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~---~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~g 342 (433)
..-++.+++.+.++ ..+.+||+.++.-. .+.....+. -. ..+... +++..+.+
T Consensus 294 ~~f~~d~~~l~s~s~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~-~~-------------~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYD-------GTIRVWDLETGSKLCLKLLSGAENSA-PV-------------TSVQFSPNGKYLLSA 352 (456)
T ss_pred EEECCCCCEEEEcCCC-------ccEEEEECCCCceeeeecccCCCCCC-ce-------------eEEEECCCCcEEEEe
Confidence 23467777777654 34788999988743 222221111 10 123332 44444455
Q ss_pred cCCCeEEEEeCCCC
Q 013929 343 YADMEVRKYDKERR 356 (433)
Q Consensus 343 g~~~~i~~yd~~~~ 356 (433)
...+.+..||....
T Consensus 353 ~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 353 SLDRTLKLWDLRSG 366 (456)
T ss_pred cCCCeEEEEEccCC
Confidence 55667888888755
No 143
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.81 E-value=40 Score=30.50 Aligned_cols=102 Identities=21% Similarity=0.376 Sum_probs=57.5
Q ss_pred EEEEEccCCCCCCcCCceEEEeCCCCCeEEc----------------CCCCCCCcceeEEEECCEEEEEccccCCCCccc
Q 013929 226 IAILAGGSDLEGNILSSAEMYNSETQTWKVL----------------PSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVL 289 (433)
Q Consensus 226 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~----------------~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~ 289 (433)
+-+|-||.+. +-.+|.||.. +|..- |....++..-+.+..+|++++.
T Consensus 176 krlvSgGcDn----~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw----------- 238 (299)
T KOG1332|consen 176 KRLVSGGCDN----LVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW----------- 238 (299)
T ss_pred ceeeccCCcc----ceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE-----------
Confidence 4577888764 3445555543 66432 2233445555556666666665
Q ss_pred ceEEEEECCCCceEec--CCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCC-CcEEEecc
Q 013929 290 TCGEEYDLETETWTEI--PNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKER-RLWFTIGR 363 (433)
Q Consensus 290 ~~v~~yd~~t~~W~~~--~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~-~~W~~v~~ 363 (433)
.-+.+.+.|+.- .+.|.+... ..-..-|.+..++|.++.+..|-... ++|.++..
T Consensus 239 ----t~~~e~e~wk~tll~~f~~~~w~---------------vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 239 ----TKDEEYEPWKKTLLEEFPDVVWR---------------VSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred ----EecCccCcccccccccCCcceEE---------------EEEeccccEEEEecCCcEEEEEEeCCCCcEEEccc
Confidence 223345667543 334443322 23445566677766677787776654 59999864
No 144
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=81.69 E-value=58 Score=32.34 Aligned_cols=145 Identities=11% Similarity=-0.013 Sum_probs=75.3
Q ss_pred cceEEEEecCCCcEEeCC-CCCCccccc-----cC---CceEEEECCEEEEECCCCCCcccceeEEEEEcCCCceecCCC
Q 013929 140 LLEWEAFDPIRRRWMHLP-RMTSNECFM-----CS---DKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMR 210 (433)
Q Consensus 140 ~~~~~~yd~~~~~W~~l~-~~p~~~~~~-----~~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 210 (433)
..+++.|||.+.+-.++. .+|..|..- .. ..-.+.++|..+++= .-...++.++..+-=-+++.
T Consensus 286 ~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~V-------SRGkaFi~~~~~~~~iqv~~ 358 (668)
T COG4946 286 AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALV-------SRGKAFIMRPWDGYSIQVGK 358 (668)
T ss_pred CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEE-------ecCcEEEECCCCCeeEEcCC
Confidence 457999999999988774 223332100 00 000112233333221 11135666664443334433
Q ss_pred CCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccc
Q 013929 211 MNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLT 290 (433)
Q Consensus 211 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~ 290 (433)
...-|+ .-...++.-.|+|-.++ ..+.+||..+..-+.+.. +..+.....+.-+|+..+++-. .-
T Consensus 359 ~~~VrY--~r~~~~~e~~vigt~dg-----D~l~iyd~~~~e~kr~e~-~lg~I~av~vs~dGK~~vvaNd-------r~ 423 (668)
T COG4946 359 KGGVRY--RRIQVDPEGDVIGTNDG-----DKLGIYDKDGGEVKRIEK-DLGNIEAVKVSPDGKKVVVAND-------RF 423 (668)
T ss_pred CCceEE--EEEccCCcceEEeccCC-----ceEEEEecCCceEEEeeC-CccceEEEEEcCCCcEEEEEcC-------ce
Confidence 222233 23333444666765544 358899999887655432 2233333344456776665422 23
Q ss_pred eEEEEECCCCceEecC
Q 013929 291 CGEEYDLETETWTEIP 306 (433)
Q Consensus 291 ~v~~yd~~t~~W~~~~ 306 (433)
+++++|+.++.=+.+.
T Consensus 424 el~vididngnv~~id 439 (668)
T COG4946 424 ELWVIDIDNGNVRLID 439 (668)
T ss_pred EEEEEEecCCCeeEec
Confidence 5789999998877664
No 145
>PRK01742 tolB translocation protein TolB; Provisional
Probab=80.55 E-value=64 Score=32.09 Aligned_cols=161 Identities=9% Similarity=-0.077 Sum_probs=78.8
Q ss_pred eeEEEEEcCCCceecCCCCCCCcceeeEEEeCCE-EEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEE
Q 013929 193 HVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEI-AILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM 271 (433)
Q Consensus 193 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 271 (433)
..++++|..+++-+.+...+.... .....-+++ |++....++ ..++|.+|..++..+.+..-... .......-
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wSp 301 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTSGAGN-NTEPSWSP 301 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeeccCCCC-cCCEEECC
Confidence 458999998887655544332111 122223554 444332222 24588999988877666442211 11122233
Q ss_pred CCE-EEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECC-EEEEEecCCCeEE
Q 013929 272 DGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNN-ELYAADYADMEVR 349 (433)
Q Consensus 272 ~g~-lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~-~ly~~gg~~~~i~ 349 (433)
+|+ |+......+ ...++.+|..+..-+.+.. .... ....-+| .|++.++ ..++
T Consensus 302 DG~~i~f~s~~~g-----~~~I~~~~~~~~~~~~l~~---~~~~---------------~~~SpDG~~ia~~~~--~~i~ 356 (429)
T PRK01742 302 DGQSILFTSDRSG-----SPQVYRMSASGGGASLVGG---RGYS---------------AQISADGKTLVMING--DNVV 356 (429)
T ss_pred CCCEEEEEECCCC-----CceEEEEECCCCCeEEecC---CCCC---------------ccCCCCCCEEEEEcC--CCEE
Confidence 555 444432221 1356667766554333311 0011 1122244 4444433 5688
Q ss_pred EEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCC
Q 013929 350 KYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGP 391 (433)
Q Consensus 350 ~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~ 391 (433)
.+|..++.++.+..-.. .. ..+ ..-+++++++++.
T Consensus 357 ~~Dl~~g~~~~lt~~~~-~~-----~~~-~sPdG~~i~~~s~ 391 (429)
T PRK01742 357 KQDLTSGSTEVLSSTFL-DE-----SPS-ISPNGIMIIYSST 391 (429)
T ss_pred EEECCCCCeEEecCCCC-CC-----Cce-ECCCCCEEEEEEc
Confidence 89999999887642111 11 122 2446776666654
No 146
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=80.42 E-value=52 Score=32.69 Aligned_cols=167 Identities=10% Similarity=0.074 Sum_probs=82.9
Q ss_pred cceeEEEEEcCCCceecCCC-C---CCCcceeeEEEeCCEEEEEcc-CCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcc
Q 013929 191 ISHVIYRYSILTNSWSSGMR-M---NAPRCLFGSASLGEIAILAGG-SDLEGNILSSAEMYNSETQTWKVLPSMKNPRKM 265 (433)
Q Consensus 191 ~~~~~~~yd~~t~~W~~~~~-~---p~~r~~~~~~~~~~~iyv~GG-~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~ 265 (433)
+..++|.|+..+++=+++.+ + ..||... +|+-++|.- ..+......++++++.+.+.=+.+.-.. |..
T Consensus 57 ~~DdlWe~slk~g~~~ritS~lGVvnn~kf~p-----dGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyfG--r~f 129 (668)
T COG4946 57 CCDDLWEYSLKDGKPLRITSGLGVVNNPKFSP-----DGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYFG--RRF 129 (668)
T ss_pred echHHHHhhhccCCeeEEecccceeccccCCC-----CCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEec--ccc
Confidence 34568888887776544432 1 2222221 222222200 0011112467888888888766654441 222
Q ss_pred e--eEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEE--
Q 013929 266 C--SGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAA-- 341 (433)
Q Consensus 266 ~--~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~-- 341 (433)
. +...-+|.|.|..-.. ......-+.|-...+-- ...+++.+... .++.-+|.+++-
T Consensus 130 T~VaG~~~dg~iiV~TD~~---tPF~q~~~lYkv~~dg~-~~e~LnlGpat---------------hiv~~dg~ivigRn 190 (668)
T COG4946 130 TRVAGWIPDGEIIVSTDFH---TPFSQWTELYKVNVDGI-KTEPLNLGPAT---------------HIVIKDGIIVIGRN 190 (668)
T ss_pred ceeeccCCCCCEEEEeccC---CCcccceeeeEEccCCc-eeeeccCCcee---------------eEEEeCCEEEEccC
Confidence 2 1223466666653221 11111122233222211 01123333333 356667755553
Q ss_pred -----------ecCCCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcC
Q 013929 342 -----------DYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGG 390 (433)
Q Consensus 342 -----------gg~~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG 390 (433)
||..+.+|.=....++.+++-.|+...+ +-+.++++||.+.-
T Consensus 191 tydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS-------~PmIV~~RvYFlsD 243 (668)
T COG4946 191 TYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVS-------SPMIVGERVYFLSD 243 (668)
T ss_pred cccCcccccccCCccceEEEEecCCcceeeeeecCCCcC-------CceEEcceEEEEec
Confidence 3455778887666678888888887764 24467899998764
No 147
>PRK01742 tolB translocation protein TolB; Provisional
Probab=79.05 E-value=72 Score=31.74 Aligned_cols=138 Identities=10% Similarity=-0.023 Sum_probs=65.3
Q ss_pred eEEEEecCCCcEEeCCCCCCccccccCCceEEEECCE-EEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcceeeE
Q 013929 142 EWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTE-LLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGS 220 (433)
Q Consensus 142 ~~~~yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 220 (433)
.++.+|..+..-..+...+.... ......+++ |++..... ...++|.+|..+++.+++..-...- ....
T Consensus 229 ~i~i~dl~tg~~~~l~~~~g~~~-----~~~wSPDG~~La~~~~~~----g~~~Iy~~d~~~~~~~~lt~~~~~~-~~~~ 298 (429)
T PRK01742 229 QLVVHDLRSGARKVVASFRGHNG-----APAFSPDGSRLAFASSKD----GVLNIYVMGANGGTPSQLTSGAGNN-TEPS 298 (429)
T ss_pred EEEEEeCCCCceEEEecCCCccC-----ceeECCCCCEEEEEEecC----CcEEEEEEECCCCCeEeeccCCCCc-CCEE
Confidence 57777777665555443332110 111223444 44432221 1235889999888776664322111 1112
Q ss_pred EEeCC-EEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEECCE-EEEEccccCCCCcccceEEEEECC
Q 013929 221 ASLGE-IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGK-FYVIGGIGGSDSKVLTCGEEYDLE 298 (433)
Q Consensus 221 ~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~-lyv~GG~~~~~~~~~~~v~~yd~~ 298 (433)
..-++ +|++....++ ...+|.+|..+..-+.+.. .. ......-+|+ |++.++ ..+..+|+.
T Consensus 299 wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~---~~-~~~~~SpDG~~ia~~~~---------~~i~~~Dl~ 361 (429)
T PRK01742 299 WSPDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG---RG-YSAQISADGKTLVMING---------DNVVKQDLT 361 (429)
T ss_pred ECCCCCEEEEEECCCC----CceEEEEECCCCCeEEecC---CC-CCccCCCCCCEEEEEcC---------CCEEEEECC
Confidence 22344 4554432222 2467777776554333321 11 1111223444 444432 236778999
Q ss_pred CCceEecC
Q 013929 299 TETWTEIP 306 (433)
Q Consensus 299 t~~W~~~~ 306 (433)
++.++.+.
T Consensus 362 ~g~~~~lt 369 (429)
T PRK01742 362 SGSTEVLS 369 (429)
T ss_pred CCCeEEec
Confidence 99887664
No 148
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=78.75 E-value=63 Score=30.92 Aligned_cols=143 Identities=10% Similarity=0.148 Sum_probs=76.8
Q ss_pred CCEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcce--eeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCC--
Q 013929 176 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCL--FGSASLGEIAILAGGSDLEGNILSSAEMYNSETQ-- 251 (433)
Q Consensus 176 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~-- 251 (433)
++.+.+.||.. +.-++|+..++.|-- .++.-... ......++.+.+-|+..+ .+.++...++
T Consensus 75 ~~~l~aTGGgD------D~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdmsG------~v~v~~~stg~~ 140 (399)
T KOG0296|consen 75 NNNLVATGGGD------DLAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDMSG------KVLVFKVSTGGE 140 (399)
T ss_pred CCceEEecCCC------ceEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCCCc------cEEEEEcccCce
Confidence 34566677762 346888999888631 12211111 222344777777777554 3556665554
Q ss_pred CeEEcCCCCCCC--cceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCC
Q 013929 252 TWKVLPSMKNPR--KMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPP 329 (433)
Q Consensus 252 ~W~~~~~~p~~r--~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~ 329 (433)
.|....++..-- ..|. .+.++++|-.+| .+|.|.+.+..-.++-+-+..+.. .
T Consensus 141 ~~~~~~e~~dieWl~WHp----~a~illAG~~DG-------svWmw~ip~~~~~kv~~Gh~~~ct--------------~ 195 (399)
T KOG0296|consen 141 QWKLDQEVEDIEWLKWHP----RAHILLAGSTDG-------SVWMWQIPSQALCKVMSGHNSPCT--------------C 195 (399)
T ss_pred EEEeecccCceEEEEecc----cccEEEeecCCC-------cEEEEECCCcceeeEecCCCCCcc--------------c
Confidence 465432221110 0110 235666665543 368887776532222111111111 1
Q ss_pred EEEEECCEEEEEecCCCeEEEEeCCCCc
Q 013929 330 LVAVVNNELYAADYADMEVRKYDKERRL 357 (433)
Q Consensus 330 ~~~~~~~~ly~~gg~~~~i~~yd~~~~~ 357 (433)
+-+.-+|+..+.|...+.|.+||+++.+
T Consensus 196 G~f~pdGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 196 GEFIPDGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred ccccCCCceEEEEecCceEEEEecCCCc
Confidence 2344568888888889999999999985
No 149
>PRK13684 Ycf48-like protein; Provisional
Probab=77.58 E-value=69 Score=30.72 Aligned_cols=129 Identities=12% Similarity=0.171 Sum_probs=60.4
Q ss_pred CceecCCC-CCCCcc-eeeEEEeCCEEEEEccCCCCCCcCCceEEEeCC--CCCeEEcCCC-CCCCcceeEEEE-CCEEE
Q 013929 203 NSWSSGMR-MNAPRC-LFGSASLGEIAILAGGSDLEGNILSSAEMYNSE--TQTWKVLPSM-KNPRKMCSGVFM-DGKFY 276 (433)
Q Consensus 203 ~~W~~~~~-~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~--t~~W~~~~~~-p~~r~~~~~~~~-~g~ly 276 (433)
.+|+++.. ++.... ...+...++..|++|.. .. +|-.. -.+|+.+... ..+...+....+ ++.++
T Consensus 76 ~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~-------g~--i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~ 146 (334)
T PRK13684 76 ETWEERSLDLPEENFRLISISFKGDEGWIVGQP-------SL--LLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAE 146 (334)
T ss_pred CCceECccCCcccccceeeeEEcCCcEEEeCCC-------ce--EEEECCCCCCCeEccCCcCCCCCceEEEEECCCcce
Confidence 47987643 332222 22333335556666421 11 23332 3479987532 122222333333 34466
Q ss_pred EEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEE-eCCC
Q 013929 277 VIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKY-DKER 355 (433)
Q Consensus 277 v~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~y-d~~~ 355 (433)
+.|... .+++=+-.-.+|+.+...... .. ..+....+..+++.|..+.++.- |...
T Consensus 147 ~~g~~G--------~i~~S~DgG~tW~~~~~~~~g-~~--------------~~i~~~~~g~~v~~g~~G~i~~s~~~gg 203 (334)
T PRK13684 147 MATNVG--------AIYRTTDGGKNWEALVEDAAG-VV--------------RNLRRSPDGKYVAVSSRGNFYSTWEPGQ 203 (334)
T ss_pred eeeccc--------eEEEECCCCCCceeCcCCCcc-eE--------------EEEEECCCCeEEEEeCCceEEEEcCCCC
Confidence 654322 123323335689988643322 11 12334444445554455666654 4555
Q ss_pred CcEEEecc
Q 013929 356 RLWFTIGR 363 (433)
Q Consensus 356 ~~W~~v~~ 363 (433)
.+|+.+..
T Consensus 204 ~tW~~~~~ 211 (334)
T PRK13684 204 TAWTPHQR 211 (334)
T ss_pred CeEEEeeC
Confidence 68998854
No 150
>PTZ00421 coronin; Provisional
Probab=77.10 E-value=90 Score=31.82 Aligned_cols=151 Identities=7% Similarity=0.011 Sum_probs=71.1
Q ss_pred EEEEECCCCCCcccceeEEEEEcCCCcee-cCCCCCCCcceeeEE-EeCCEEEEEccCCCCCCcCCceEEEeCCCCCe-E
Q 013929 178 ELLVFGRELTAHHISHVIYRYSILTNSWS-SGMRMNAPRCLFGSA-SLGEIAILAGGSDLEGNILSSAEMYNSETQTW-K 254 (433)
Q Consensus 178 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~ 254 (433)
.+++.|+. ...+.+||..+++-. .+.... ..-.+++ ..++.+++.|+.+ ..+.+||+.++.- .
T Consensus 139 ~iLaSgs~------DgtVrIWDl~tg~~~~~l~~h~--~~V~sla~spdG~lLatgs~D------g~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 139 NVLASAGA------DMVVNVWDVERGKAVEVIKCHS--DQITSLEWNLDGSLLCTTSKD------KKLNIIDPRDGTIVS 204 (493)
T ss_pred CEEEEEeC------CCEEEEEECCCCeEEEEEcCCC--CceEEEEEECCCCEEEEecCC------CEEEEEECCCCcEEE
Confidence 46666654 335889998876532 221111 1111222 2366777777654 3478899987652 1
Q ss_pred EcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCce--EecCCCCCCCCCCCCCCcCCCCcCCCCEEE
Q 013929 255 VLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETW--TEIPNMSPARGGAARGTEMPASAEAPPLVA 332 (433)
Q Consensus 255 ~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W--~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~ 332 (433)
.+......+........++..++..|.+.. .-..+..||+.+..- .... .. .... ....
T Consensus 205 tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s---~Dr~VklWDlr~~~~p~~~~~-~d-~~~~--------------~~~~ 265 (493)
T PTZ00421 205 SVEAHASAKSQRCLWAKRKDLIITLGCSKS---QQRQIMLWDTRKMASPYSTVD-LD-QSSA--------------LFIP 265 (493)
T ss_pred EEecCCCCcceEEEEcCCCCeEEEEecCCC---CCCeEEEEeCCCCCCceeEec-cC-CCCc--------------eEEE
Confidence 121111111111111223334444443311 224578899865331 1110 00 0001 0122
Q ss_pred EE--CCEEEEEec-CCCeEEEEeCCCCcEEEe
Q 013929 333 VV--NNELYAADY-ADMEVRKYDKERRLWFTI 361 (433)
Q Consensus 333 ~~--~~~ly~~gg-~~~~i~~yd~~~~~W~~v 361 (433)
.+ ++.++++|| ..+.|..||..++.....
T Consensus 266 ~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 266 FFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred EEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 22 455555555 477899999988876543
No 151
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=75.50 E-value=81 Score=30.51 Aligned_cols=62 Identities=13% Similarity=0.037 Sum_probs=34.7
Q ss_pred cceEEEEecCCCcEE-eCCCCCCccccccC--CceEEEECC-EEEEECCCCCCcccceeEEEEEcCCCcee
Q 013929 140 LLEWEAFDPIRRRWM-HLPRMTSNECFMCS--DKESLAVGT-ELLVFGRELTAHHISHVIYRYSILTNSWS 206 (433)
Q Consensus 140 ~~~~~~yd~~~~~W~-~l~~~p~~~~~~~~--~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 206 (433)
...+.+||+.+.+=. +++..+.|+..... ....+..+| .+||.-- ...+.+-+.|..+++-.
T Consensus 76 ~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~-----~p~~~V~VvD~~~~kvv 141 (352)
T TIGR02658 76 TDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF-----SPSPAVGVVDLEGKAFV 141 (352)
T ss_pred CCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC-----CCCCEEEEEECCCCcEE
Confidence 467889999987764 33322333311111 112233344 5776631 23567899999998764
No 152
>PRK04043 tolB translocation protein TolB; Provisional
Probab=74.97 E-value=93 Score=30.94 Aligned_cols=151 Identities=8% Similarity=-0.050 Sum_probs=84.3
Q ss_pred cceEEEEecCCCcEEeCCCCCCccccccCCceEEEECC-EEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCccee
Q 013929 140 LLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGT-ELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLF 218 (433)
Q Consensus 140 ~~~~~~yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~ 218 (433)
..+++.+|..+++=..+...+.... ......++ +|++.-... ...++|++|..+++++++...+..-..
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~~-----~~~~SPDG~~la~~~~~~----g~~~Iy~~dl~~g~~~~LT~~~~~d~~- 281 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGMLV-----VSDVSKDGSKLLLTMAPK----GQPDIYLYDTNTKTLTQITNYPGIDVN- 281 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcEE-----eeEECCCCCEEEEEEccC----CCcEEEEEECCCCcEEEcccCCCccCc-
Confidence 3578999988877666654332110 01122233 454443221 235799999999999888654431111
Q ss_pred eEEEe-CCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEECCEEEEEccccCCCC--cccceEEEE
Q 013929 219 GSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDS--KVLTCGEEY 295 (433)
Q Consensus 219 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~--~~~~~v~~y 295 (433)
....- +.+||+..... ....++++|..++..+.+..-. ... ....-+|+..++-....... .....++++
T Consensus 282 p~~SPDG~~I~F~Sdr~----g~~~Iy~~dl~~g~~~rlt~~g--~~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~ 354 (419)
T PRK04043 282 GNFVEDDKRIVFVSDRL----GYPNIFMKKLNSGSVEQVVFHG--KNN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLI 354 (419)
T ss_pred cEECCCCCEEEEEECCC----CCceEEEEECCCCCeEeCccCC--CcC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEE
Confidence 12222 44677664332 1367999999999887765321 122 23334555434433221111 123578999
Q ss_pred ECCCCceEecCC
Q 013929 296 DLETETWTEIPN 307 (433)
Q Consensus 296 d~~t~~W~~~~~ 307 (433)
|+.++.++.+..
T Consensus 355 d~~~g~~~~LT~ 366 (419)
T PRK04043 355 STNSDYIRRLTA 366 (419)
T ss_pred ECCCCCeEECCC
Confidence 999999988865
No 153
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=74.46 E-value=78 Score=29.83 Aligned_cols=225 Identities=11% Similarity=0.038 Sum_probs=112.3
Q ss_pred EEEEecCCCcEEeCCCCCCccccccCCceEEEECC-EEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCC-cceeeE
Q 013929 143 WEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGT-ELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAP-RCLFGS 220 (433)
Q Consensus 143 ~~~yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-r~~~~~ 220 (433)
+.+||+.+.+=...-..|..|+|+ +|++...++ .+|..=... ......+-+||.. +..+++...+.. ..-|-+
T Consensus 30 ~~v~D~~~g~~~~~~~a~~gRHFy--GHg~fs~dG~~LytTEnd~--~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel 104 (305)
T PF07433_consen 30 ALVFDCRTGQLLQRLWAPPGRHFY--GHGVFSPDGRLLYTTENDY--ETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHEL 104 (305)
T ss_pred EEEEEcCCCceeeEEcCCCCCEEe--cCEEEcCCCCEEEEecccc--CCCcEEEEEEECc-CCcEEEeEecCCCcChhhE
Confidence 567898887655443445566554 466666654 566553321 2234458899998 666666655433 333444
Q ss_pred EEe-CC-EEEEE-ccCCCC---CC-------cCCceEEEeCCCCCeEEcCCCCCCC---cceeEEE-ECCEEEEEccccC
Q 013929 221 ASL-GE-IAILA-GGSDLE---GN-------ILSSAEMYNSETQTWKVLPSMKNPR---KMCSGVF-MDGKFYVIGGIGG 283 (433)
Q Consensus 221 ~~~-~~-~iyv~-GG~~~~---~~-------~~~~~~~yd~~t~~W~~~~~~p~~r---~~~~~~~-~~g~lyv~GG~~~ 283 (433)
... ++ .|.|. ||.... ++ .-.++-..|..+++=.+--.+|... +-...++ -+|.+.+-.=+.+
T Consensus 105 ~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg 184 (305)
T PF07433_consen 105 LLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQG 184 (305)
T ss_pred EEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCC
Confidence 444 44 45444 665322 11 1234566778877643332333221 1222333 3444444333333
Q ss_pred CCCcccceEEEEECCCCceEecCCCCCCC-CCCCCCCcCCCCcCCCCEEEEEC-CEEE-EEecCCCeEEEEeCCCCcEEE
Q 013929 284 SDSKVLTCGEEYDLETETWTEIPNMSPAR-GGAARGTEMPASAEAPPLVAVVN-NELY-AADYADMEVRKYDKERRLWFT 360 (433)
Q Consensus 284 ~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-~~~~~~~~~~~~~~~~~~~~~~~-~~ly-~~gg~~~~i~~yd~~~~~W~~ 360 (433)
.......-+..++.... -+.+. +|... .. ...+..++++.. +.++ +..-..+.+.+||..+++|..
T Consensus 185 ~~~~~~PLva~~~~g~~-~~~~~-~p~~~~~~---------l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 185 DPGDAPPLVALHRRGGA-LRLLP-APEEQWRR---------LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLG 253 (305)
T ss_pred CCCccCCeEEEEcCCCc-ceecc-CChHHHHh---------hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEee
Confidence 32222222333333321 22221 11110 00 001222455543 3344 443345789999999999999
Q ss_pred eccCCCcccCCCcccEEEEEeCCEEEEEcCC
Q 013929 361 IGRLPERANSMNGWGLAFRACGDRLIVIGGP 391 (433)
Q Consensus 361 v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~ 391 (433)
...++.. ++++..++..++..|.
T Consensus 254 ~~~l~D~--------cGva~~~~~f~~ssG~ 276 (305)
T PF07433_consen 254 SVPLPDA--------CGVAPTDDGFLVSSGQ 276 (305)
T ss_pred ccccCce--------eeeeecCCceEEeCCC
Confidence 8888775 4455566665555554
No 154
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=74.21 E-value=80 Score=29.87 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=71.8
Q ss_pred CCceEEEeCC---CCCeEE--cCCC-CCCCcce-eEEEECCEE-EEE--c------cccCCCCcccceEEEEECCCCceE
Q 013929 240 LSSAEMYNSE---TQTWKV--LPSM-KNPRKMC-SGVFMDGKF-YVI--G------GIGGSDSKVLTCGEEYDLETETWT 303 (433)
Q Consensus 240 ~~~~~~yd~~---t~~W~~--~~~~-p~~r~~~-~~~~~~g~l-yv~--G------G~~~~~~~~~~~v~~yd~~t~~W~ 303 (433)
++.+-.+++. .-.|+. +..+ |..|++. +.+..+|+. ||. | |+. ....+.-.+.|+.+++=-
T Consensus 122 fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR---~~~~~gG~vidv~s~evl 198 (335)
T TIGR03032 122 FSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWR---EGRRDGGCVIDIPSGEVV 198 (335)
T ss_pred ceeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCccccc---ccccCCeEEEEeCCCCEE
Confidence 4445555554 345763 2222 4456553 667777774 433 1 222 122233345677777422
Q ss_pred ecC-CCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEeC
Q 013929 304 EIP-NMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACG 382 (433)
Q Consensus 304 ~~~-~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~ 382 (433)
.-. .||. +.--++|+||+.....+.+..+|+++++...+..+|..... .+ ..
T Consensus 199 ~~GLsmPh-------------------SPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rG-----L~--f~- 251 (335)
T TIGR03032 199 ASGLSMPH-------------------SPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRG-----LA--FA- 251 (335)
T ss_pred EcCccCCc-------------------CCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcc-----cc--ee-
Confidence 111 2332 34456899999988889999999999999999988876532 33 33
Q ss_pred CEEEEEcCC
Q 013929 383 DRLIVIGGP 391 (433)
Q Consensus 383 ~~l~v~GG~ 391 (433)
|.++++|-.
T Consensus 252 G~llvVgmS 260 (335)
T TIGR03032 252 GDFAFVGLS 260 (335)
T ss_pred CCEEEEEec
Confidence 666666643
No 155
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=73.83 E-value=59 Score=28.13 Aligned_cols=76 Identities=17% Similarity=0.143 Sum_probs=46.4
Q ss_pred CCcccceeEEEEEcCCCceecC--CCCC---CCcceeeEEEe-CC-EEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCC
Q 013929 187 TAHHISHVIYRYSILTNSWSSG--MRMN---APRCLFGSASL-GE-IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSM 259 (433)
Q Consensus 187 ~~~~~~~~~~~yd~~t~~W~~~--~~~p---~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 259 (433)
........+|++|..++.|..+ .+-+ .|. -+.-+ +. .++++|...+.-.--..+++|++.++.=+.+.+.
T Consensus 82 a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK---~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~ 158 (200)
T PF15525_consen 82 AEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK---YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEW 158 (200)
T ss_pred cccccceeEEEEecCCCceEEEEecCcccccCCc---eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeec
Confidence 3344566799999999988654 2221 222 12223 33 5566664433322346799999999998888776
Q ss_pred CCCCcc
Q 013929 260 KNPRKM 265 (433)
Q Consensus 260 p~~r~~ 265 (433)
......
T Consensus 159 ~dkkqQ 164 (200)
T PF15525_consen 159 KDKKQQ 164 (200)
T ss_pred ccccee
Confidence 554433
No 156
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=73.31 E-value=2.9 Score=40.55 Aligned_cols=47 Identities=11% Similarity=0.134 Sum_probs=40.8
Q ss_pred CCCCCCCCCCchhHHHhhccccCcccchhhhhhcHHHHHhhcCccee
Q 013929 75 SDLDSLIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELY 121 (433)
Q Consensus 75 ~~~~~~~~~LP~dl~~~iL~rlP~~~~~~~~~V~k~w~~ll~~~~~~ 121 (433)
..+..+..+||.|++..+++.|-..++.+.+-+|+.|+.+..++.=|
T Consensus 66 ~~~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~ 112 (483)
T KOG4341|consen 66 ADNNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCW 112 (483)
T ss_pred hhcccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccc
Confidence 34555667899999999999999999999999999999998877654
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=73.25 E-value=1.1e+02 Score=30.80 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=19.6
Q ss_pred EEEECCEEEEEecCCCeEEEEeCCCCc
Q 013929 331 VAVVNNELYAADYADMEVRKYDKERRL 357 (433)
Q Consensus 331 ~~~~~~~ly~~gg~~~~i~~yd~~~~~ 357 (433)
..-.+..|++-=|....|..||.....
T Consensus 216 fspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 216 FSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred ecCCccceEEEecccceEEEeeccccc
Confidence 344566777766788899999988654
No 158
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=72.09 E-value=59 Score=27.38 Aligned_cols=81 Identities=9% Similarity=-0.016 Sum_probs=47.6
Q ss_pred EEeCCEEEEEccCCCCCCcCCceEEEeCCCCCe-EEcCCCCCCCc----ceeEE-EECCEEEEEccccCCCCcccceEEE
Q 013929 221 ASLGEIAILAGGSDLEGNILSSAEMYNSETQTW-KVLPSMKNPRK----MCSGV-FMDGKFYVIGGIGGSDSKVLTCGEE 294 (433)
Q Consensus 221 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~p~~r~----~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~ 294 (433)
+.++|.+|-++....... ..-+..||..+.+. +.+ ++|.... ..... +.+++|-++--.. ....-+||+
T Consensus 2 V~vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~-~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~---~~~~~~IWv 76 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSL-PLPFCNDDDDDSVSLSVVRGDCLCVLYQCD---ETSKIEIWV 76 (164)
T ss_pred EEECCEEEeeEEecCCCC-ceEEEEEeccccccCCEE-CCCCccCccCCEEEEEEecCCEEEEEEecc---CCccEEEEE
Confidence 567899998876544321 12689999999999 544 3343322 22332 3377887773221 112245565
Q ss_pred EE---CCCCceEecC
Q 013929 295 YD---LETETWTEIP 306 (433)
Q Consensus 295 yd---~~t~~W~~~~ 306 (433)
-+ -...+|+++-
T Consensus 77 m~~~~~~~~SWtK~~ 91 (164)
T PF07734_consen 77 MKKYGYGKESWTKLF 91 (164)
T ss_pred EeeeccCcceEEEEE
Confidence 44 3377899874
No 159
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=72.09 E-value=42 Score=30.23 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=29.3
Q ss_pred EECCEEEEEecCCCeEEEEeCCCCcEEEeccCCCcc
Q 013929 333 VVNNELYAADYADMEVRKYDKERRLWFTIGRLPERA 368 (433)
Q Consensus 333 ~~~~~ly~~gg~~~~i~~yd~~~~~W~~v~~lp~~~ 368 (433)
--+|.||+.-...+.|+++|+.+++-..--.+|.++
T Consensus 220 D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~q 255 (310)
T KOG4499|consen 220 DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQ 255 (310)
T ss_pred ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCc
Confidence 347899998878889999999999866555678766
No 160
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=72.03 E-value=99 Score=29.93 Aligned_cols=104 Identities=7% Similarity=-0.114 Sum_probs=58.1
Q ss_pred ceEEEEecCCCcEEe-CCCCCCccccccCCceEEEECCEEEEECCCC---CCcccceeEEEEEcCCCcee-cCCCCCCCc
Q 013929 141 LEWEAFDPIRRRWMH-LPRMTSNECFMCSDKESLAVGTELLVFGREL---TAHHISHVIYRYSILTNSWS-SGMRMNAPR 215 (433)
Q Consensus 141 ~~~~~yd~~~~~W~~-l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~~yd~~t~~W~-~~~~~p~~r 215 (433)
+.+.++|..+.+-.. ++.-..|+ ..+..-+..||+.-.+. .-+...+.+.+||+.|.+-. +++..+.||
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~------~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN------PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc------eeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch
Confidence 678889988755422 22222222 11122356788886531 12235667999999998764 343333434
Q ss_pred c-------eeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEE
Q 013929 216 C-------LFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKV 255 (433)
Q Consensus 216 ~-------~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 255 (433)
. .+....-+..+||.- ...-..+-+.|..+++--.
T Consensus 101 ~~~~~~~~~~~ls~dgk~l~V~n-----~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 101 FLVGTYPWMTSLTPDNKTLLFYQ-----FSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred hhccCccceEEECCCCCEEEEec-----CCCCCEEEEEECCCCcEEE
Confidence 1 122222244688772 1235678999999987543
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=70.57 E-value=76 Score=31.74 Aligned_cols=90 Identities=12% Similarity=0.031 Sum_probs=49.8
Q ss_pred eEEEeCCCC----CeEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCC
Q 013929 243 AEMYNSETQ----TWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARG 318 (433)
Q Consensus 243 ~~~yd~~t~----~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~ 318 (433)
+..||.... .|.+...-| ..+-+....+..|++--|++ ..+..||..+..-+.--....|.+.
T Consensus 189 VtlwDv~g~sp~~~~~~~HsAP--~~gicfspsne~l~vsVG~D-------kki~~yD~~s~~s~~~l~y~~Plst---- 255 (673)
T KOG4378|consen 189 VTLWDVQGMSPIFHASEAHSAP--CRGICFSPSNEALLVSVGYD-------KKINIYDIRSQASTDRLTYSHPLST---- 255 (673)
T ss_pred EEEEeccCCCcccchhhhccCC--cCcceecCCccceEEEeccc-------ceEEEeecccccccceeeecCCcce----
Confidence 455555433 244333333 22333445677888887776 4578899876543221111111111
Q ss_pred CcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCC
Q 013929 319 TEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERR 356 (433)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~ 356 (433)
....-+|.+.+.|...+.++.||....
T Consensus 256 -----------vaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 256 -----------VAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred -----------eeecCCceEEEeecCCceEEEEecccC
Confidence 122335777778888899999998653
No 162
>PLN00181 protein SPA1-RELATED; Provisional
Probab=70.27 E-value=1.7e+02 Score=31.87 Aligned_cols=144 Identities=14% Similarity=0.082 Sum_probs=71.2
Q ss_pred CCEEEEECCCCCCcccceeEEEEEcCCCce-ecCCCCCCCcceeeEEE---eCCEEEEEccCCCCCCcCCceEEEeCCCC
Q 013929 176 GTELLVFGRELTAHHISHVIYRYSILTNSW-SSGMRMNAPRCLFGSAS---LGEIAILAGGSDLEGNILSSAEMYNSETQ 251 (433)
Q Consensus 176 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 251 (433)
++.+++.|+. ...+.+||..++.- ..+. .. ....++. .++.+++.|+.+ ..+.+||..+.
T Consensus 587 ~~~~L~Sgs~------Dg~v~iWd~~~~~~~~~~~---~~-~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~ 650 (793)
T PLN00181 587 DPTLLASGSD------DGSVKLWSINQGVSIGTIK---TK-ANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNP 650 (793)
T ss_pred CCCEEEEEcC------CCEEEEEECCCCcEEEEEe---cC-CCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCC
Confidence 3556666654 23578888876532 1111 11 1111222 246777777644 35888998764
Q ss_pred C--eEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCC----ceEecCCCCCCCCCCCCCCcCCCCc
Q 013929 252 T--WKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETE----TWTEIPNMSPARGGAARGTEMPASA 325 (433)
Q Consensus 252 ~--W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~----~W~~~~~~p~~r~~~~~~~~~~~~~ 325 (433)
. ...+.... ..-..+...++..++.|+.+ ..+..||+.+. .|..+..+.......
T Consensus 651 ~~~~~~~~~h~--~~V~~v~f~~~~~lvs~s~D-------~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i---------- 711 (793)
T PLN00181 651 KLPLCTMIGHS--KTVSYVRFVDSSTLVSSSTD-------NTLKLWDLSMSISGINETPLHSFMGHTNVK---------- 711 (793)
T ss_pred CccceEecCCC--CCEEEEEEeCCCEEEEEECC-------CEEEEEeCCCCccccCCcceEEEcCCCCCe----------
Confidence 2 11111100 01112333466667777655 23677887643 122221111000000
Q ss_pred CCCCEEEEECCEEEEEecCCCeEEEEeCCCC
Q 013929 326 EAPPLVAVVNNELYAADYADMEVRKYDKERR 356 (433)
Q Consensus 326 ~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~ 356 (433)
.......++.+++.|+..+.+.+|+....
T Consensus 712 --~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 712 --NFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred --eEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 00123335677778888899999987654
No 163
>PTZ00420 coronin; Provisional
Probab=69.08 E-value=1.5e+02 Score=30.83 Aligned_cols=67 Identities=10% Similarity=0.123 Sum_probs=37.3
Q ss_pred ECCEEEEEecCCCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEE-----eCCEEEEEcCCCCCCCCeeEEEEeecC
Q 013929 334 VNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRA-----CGDRLIVIGGPKASGEGFIELNSWVPS 407 (433)
Q Consensus 334 ~~~~ly~~gg~~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~-----~~~~l~v~GG~~~~~~~~~~~~~~~~~ 407 (433)
.+|.+++.++..+.+.+||+.+++ .+..+....... ....+. .++..++.+|.++.. ...+.+|+..
T Consensus 177 pdG~lLat~s~D~~IrIwD~Rsg~--~i~tl~gH~g~~---~s~~v~~~~fs~d~~~IlTtG~d~~~--~R~VkLWDlr 248 (568)
T PTZ00420 177 IKGNLLSGTCVGKHMHIIDPRKQE--IASSFHIHDGGK---NTKNIWIDGLGGDDNYILSTGFSKNN--MREMKLWDLK 248 (568)
T ss_pred CCCCEEEEEecCCEEEEEECCCCc--EEEEEecccCCc---eeEEEEeeeEcCCCCEEEEEEcCCCC--ccEEEEEECC
Confidence 367888877778899999998764 222222211100 011111 345666666665432 2357888876
No 164
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=68.63 E-value=1.2e+02 Score=29.72 Aligned_cols=143 Identities=14% Similarity=0.066 Sum_probs=81.4
Q ss_pred eeEEEEEcCCC-----ceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCC---eE-EcCCCCCCC
Q 013929 193 HVIYRYSILTN-----SWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT---WK-VLPSMKNPR 263 (433)
Q Consensus 193 ~~~~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~---W~-~~~~~p~~r 263 (433)
+.+++.|.... .|+.+.+- ..-....+...++.+|+.-..+ .....+..+++.+.. |. .+.+-....
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~-~~~~~~~v~~~~~~~yi~Tn~~---a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 327 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPR-EDGVEYYVDHHGDRLYILTNDD---APNGRLVAVDLADPSPAEWWTVLIPEDEDV 327 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEES-SSS-EEEEEEETTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred CeEEEEeccccCCCcCCcEEEeCC-CCceEEEEEccCCEEEEeeCCC---CCCcEEEEecccccccccceeEEcCCCCce
Confidence 67899999875 67766431 2222233444588999886522 234678888888765 66 443322222
Q ss_pred cceeEEEECCEEEEEccccCCCCcccceEEEEECC-CCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEE-----CCE
Q 013929 264 KMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLE-TETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-----NNE 337 (433)
Q Consensus 264 ~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~-t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~ 337 (433)
.--.+...++.|++.--.+ ....+.+||+. +..-..++ +|. .+ ++... .+.
T Consensus 328 ~l~~~~~~~~~Lvl~~~~~-----~~~~l~v~~~~~~~~~~~~~-~p~--~g---------------~v~~~~~~~~~~~ 384 (414)
T PF02897_consen 328 SLEDVSLFKDYLVLSYREN-----GSSRLRVYDLDDGKESREIP-LPE--AG---------------SVSGVSGDFDSDE 384 (414)
T ss_dssp EEEEEEEETTEEEEEEEET-----TEEEEEEEETT-TEEEEEEE-SSS--SS---------------EEEEEES-TT-SE
T ss_pred eEEEEEEECCEEEEEEEEC-----CccEEEEEECCCCcEEeeec-CCc--ce---------------EEeccCCCCCCCE
Confidence 3345556788888874433 45678999998 33333332 222 12 11111 244
Q ss_pred EEE-EecC--CCeEEEEeCCCCcEEEec
Q 013929 338 LYA-ADYA--DMEVRKYDKERRLWFTIG 362 (433)
Q Consensus 338 ly~-~gg~--~~~i~~yd~~~~~W~~v~ 362 (433)
+++ +.+. ...++.||+.+++.+.+.
T Consensus 385 ~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 385 LRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred EEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 444 3333 368999999999877653
No 165
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=68.36 E-value=1.3e+02 Score=31.23 Aligned_cols=154 Identities=19% Similarity=0.072 Sum_probs=83.1
Q ss_pred ECCEEEEECCCCCCcccceeEEEEEcCCC-ceecCCCCCCCcceeeEE---EeCCEEEEEccCCCCCCcCCceEEEeCCC
Q 013929 175 VGTELLVFGRELTAHHISHVIYRYSILTN-SWSSGMRMNAPRCLFGSA---SLGEIAILAGGSDLEGNILSSAEMYNSET 250 (433)
Q Consensus 175 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~p~~r~~~~~~---~~~~~iyv~GG~~~~~~~~~~~~~yd~~t 250 (433)
-++.+.++|-. ..-.+|...|.-+ +-+.+..+|..+...+.. .-+++++++. ....+++.++.++
T Consensus 392 Pdg~~Ia~st~-----~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s------~~~~~le~~el~~ 460 (691)
T KOG2048|consen 392 PDGNLIAISTV-----SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVS------KNIFSLEEFELET 460 (691)
T ss_pred CCCCEEEEeec-----cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEe------cccceeEEEEecC
Confidence 35556666532 2223454444433 334556667665444333 3367777774 2346788999999
Q ss_pred CCeEEcCCCCCC-Cc---ceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCc
Q 013929 251 QTWKVLPSMKNP-RK---MCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASA 325 (433)
Q Consensus 251 ~~W~~~~~~p~~-r~---~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~ 325 (433)
.+.+++.+.... .. .+-++. .++.|-++++. ..|.+|++++.+-..+.+.+. +..- |
T Consensus 461 ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~--------g~I~v~nl~~~~~~~l~~rln-~~vT-------a-- 522 (691)
T KOG2048|consen 461 PSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR--------GQIFVYNLETLESHLLKVRLN-IDVT-------A-- 522 (691)
T ss_pred cchhhhhccccccCCCcceeEEEcCCCCEEEEEecc--------ceEEEEEcccceeecchhccC-ccee-------e--
Confidence 888876543222 21 122222 34556666533 358999999998777763322 2110 0
Q ss_pred CCCCEEE-EECCEEEEEecCCCeEEEEeCCCC---cEEEe
Q 013929 326 EAPPLVA-VVNNELYAADYADMEVRKYDKERR---LWFTI 361 (433)
Q Consensus 326 ~~~~~~~-~~~~~ly~~gg~~~~i~~yd~~~~---~W~~v 361 (433)
.+.. ...++|.+. ..++.++.||.+.. +|...
T Consensus 523 ---~~~~~~~~~~lvva-ts~nQv~efdi~~~~l~~ws~~ 558 (691)
T KOG2048|consen 523 ---AAFSPFVRNRLVVA-TSNNQVFEFDIEARNLTRWSKN 558 (691)
T ss_pred ---eeccccccCcEEEE-ecCCeEEEEecchhhhhhhhhc
Confidence 0111 233555544 35788999998543 45443
No 166
>PRK02889 tolB translocation protein TolB; Provisional
Probab=68.10 E-value=1.3e+02 Score=29.83 Aligned_cols=145 Identities=8% Similarity=-0.049 Sum_probs=70.7
Q ss_pred eeEEEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEEC
Q 013929 193 HVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMD 272 (433)
Q Consensus 193 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 272 (433)
..+++.|......+.+..-+..-. .....-+++.+++..... ....++++|..+++=+.+...+..- ......-+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~-~p~wSPDG~~la~~s~~~---~~~~I~~~dl~~g~~~~l~~~~g~~-~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPII-SPAWSPDGTKLAYVSFES---KKPVVYVHDLATGRRRVVANFKGSN-SAPAWSPD 250 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcc-cceEcCCCCEEEEEEccC---CCcEEEEEECCCCCEEEeecCCCCc-cceEECCC
Confidence 458888875544444322211111 112222444333333221 1356999999887655554433211 11222235
Q ss_pred C-EEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCE-EEEEec--CCCeE
Q 013929 273 G-KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNE-LYAADY--ADMEV 348 (433)
Q Consensus 273 g-~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~-ly~~gg--~~~~i 348 (433)
| +|++....++ ...++.+|..++..+.+..-...... ....-+|+ |++... ....+
T Consensus 251 G~~la~~~~~~g-----~~~Iy~~d~~~~~~~~lt~~~~~~~~---------------~~wSpDG~~l~f~s~~~g~~~I 310 (427)
T PRK02889 251 GRTLAVALSRDG-----NSQIYTVNADGSGLRRLTQSSGIDTE---------------PFFSPDGRSIYFTSDRGGAPQI 310 (427)
T ss_pred CCEEEEEEccCC-----CceEEEEECCCCCcEECCCCCCCCcC---------------eEEcCCCCEEEEEecCCCCcEE
Confidence 5 4544433321 25688899888776666432111111 12333444 444432 23468
Q ss_pred EEEeCCCCcEEEec
Q 013929 349 RKYDKERRLWFTIG 362 (433)
Q Consensus 349 ~~yd~~~~~W~~v~ 362 (433)
+.+|..++..+.+.
T Consensus 311 y~~~~~~g~~~~lt 324 (427)
T PRK02889 311 YRMPASGGAAQRVT 324 (427)
T ss_pred EEEECCCCceEEEe
Confidence 88888887777664
No 167
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=66.23 E-value=1.5e+02 Score=29.79 Aligned_cols=105 Identities=21% Similarity=0.196 Sum_probs=59.0
Q ss_pred CCEEEEEccCCCCCCcCCceEEEeCCCC-C-eEEcCCCCCCCcceeEE-EECCEEEEEccccCCCCcccceEEEEECCCC
Q 013929 224 GEIAILAGGSDLEGNILSSAEMYNSETQ-T-WKVLPSMKNPRKMCSGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETE 300 (433)
Q Consensus 224 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~-W~~~~~~p~~r~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~ 300 (433)
+++ |++.|..+ ..+.++|.+.+ . =+.+...+... ++++ .-.+++++.|+.++ .+.++|+.+.
T Consensus 214 d~~-~l~s~s~D-----~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D~-------tvriWd~~~~ 278 (456)
T KOG0266|consen 214 DGS-YLLSGSDD-----KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDDG-------TVRIWDVRTG 278 (456)
T ss_pred CCc-EEEEecCC-----ceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCCC-------cEEEEeccCC
Confidence 455 55544332 35788888443 2 23333333332 2222 33568888888773 4788999885
Q ss_pred ceEec-CCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCCcE
Q 013929 301 TWTEI-PNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLW 358 (433)
Q Consensus 301 ~W~~~-~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~~W 358 (433)
+=... ..-..+... ...-.++.+++.+...+.+.+||..++.-
T Consensus 279 ~~~~~l~~hs~~is~---------------~~f~~d~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISG---------------LAFSPDGNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred eEEEeeeccCCceEE---------------EEECCCCCEEEEcCCCccEEEEECCCCce
Confidence 43322 111111111 12334677777777788999999988874
No 168
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=65.16 E-value=1.2e+02 Score=28.21 Aligned_cols=181 Identities=10% Similarity=0.027 Sum_probs=93.3
Q ss_pred EEEEecCCCcEEeCCCCCCccccccCCceEEE-ECCEEEEECCCCCCcccceeEEEEEcCCCceecCCC-CCCCcceeeE
Q 013929 143 WEAFDPIRRRWMHLPRMTSNECFMCSDKESLA-VGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMR-MNAPRCLFGS 220 (433)
Q Consensus 143 ~~~yd~~~~~W~~l~~~p~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~-~p~~r~~~~~ 220 (433)
+-..||.+.+=...|--...+ .+.+++ -++..++.-+. +.+-++|+++.+-++.+- +..+-.....
T Consensus 85 iGhLdP~tGev~~ypLg~Ga~-----Phgiv~gpdg~~Witd~~-------~aI~R~dpkt~evt~f~lp~~~a~~nlet 152 (353)
T COG4257 85 IGHLDPATGEVETYPLGSGAS-----PHGIVVGPDGSAWITDTG-------LAIGRLDPKTLEVTRFPLPLEHADANLET 152 (353)
T ss_pred ceecCCCCCceEEEecCCCCC-----CceEEECCCCCeeEecCc-------ceeEEecCcccceEEeecccccCCCcccc
Confidence 334677776665554322221 111222 23455555322 257889998887665431 1122223333
Q ss_pred EEe--CCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCccee-EEEECCEEEEEccccCCCCcccceEEEEEC
Q 013929 221 ASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCS-GVFMDGKFYVIGGIGGSDSKVLTCGEEYDL 297 (433)
Q Consensus 221 ~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~-~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~ 297 (433)
+++ .+.++..|- .+. --++||.++.-+..+. |....-++ ++.-+|.+|+..=. -+-+-..|+
T Consensus 153 ~vfD~~G~lWFt~q-~G~------yGrLdPa~~~i~vfpa-PqG~gpyGi~atpdGsvwyasla-------gnaiaridp 217 (353)
T COG4257 153 AVFDPWGNLWFTGQ-IGA------YGRLDPARNVISVFPA-PQGGGPYGICATPDGSVWYASLA-------GNAIARIDP 217 (353)
T ss_pred eeeCCCccEEEeec-ccc------ceecCcccCceeeecc-CCCCCCcceEECCCCcEEEEecc-------ccceEEccc
Confidence 444 346666542 111 1145666655443332 22222233 44568888876221 133566777
Q ss_pred CCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCCcEEEec
Q 013929 298 ETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIG 362 (433)
Q Consensus 298 ~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~~W~~v~ 362 (433)
.+..=+.++ .|.+...... ...+--.+++++.......+++||+.+..|.+-+
T Consensus 218 ~~~~aev~p-~P~~~~~gsR-----------riwsdpig~~wittwg~g~l~rfdPs~~sW~eyp 270 (353)
T COG4257 218 FAGHAEVVP-QPNALKAGSR-----------RIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYP 270 (353)
T ss_pred ccCCcceec-CCCccccccc-----------ccccCccCcEEEeccCCceeeEeCcccccceeee
Confidence 777555553 3333111000 0123445788888766789999999999999865
No 169
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=63.82 E-value=1.3e+02 Score=28.39 Aligned_cols=143 Identities=10% Similarity=-0.011 Sum_probs=67.5
Q ss_pred eEEEEecCCC-cEEeCCCCCCccccccCCceEEEECCEEEEECCC-----CCCcccceeEEEEEcCCCceecCCCCCCCc
Q 013929 142 EWEAFDPIRR-RWMHLPRMTSNECFMCSDKESLAVGTELLVFGRE-----LTAHHISHVIYRYSILTNSWSSGMRMNAPR 215 (433)
Q Consensus 142 ~~~~yd~~~~-~W~~l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~-----~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r 215 (433)
.+..+++.+. .|+.+............+-..+..+|.+|+---. .........+|++||. +...++-.-....
T Consensus 86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~ 164 (307)
T COG3386 86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTI 164 (307)
T ss_pred ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEe
Confidence 3555666543 3355544333222222233344456777765322 1222344479999994 4444432211111
Q ss_pred ceeeEEEeCC-EEEEEccCCCCCCcCCceEEEeCCCC------C--eEEcCCCCCCCcceeEEEECCEEEEEccccCCCC
Q 013929 216 CLFGSASLGE-IAILAGGSDLEGNILSSAEMYNSETQ------T--WKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDS 286 (433)
Q Consensus 216 ~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~------~--W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~ 286 (433)
..--+.+-++ .+|+. ....+.+++|+.... + +.... ....+-.-.++=-+|.+|+.+...+
T Consensus 165 ~NGla~SpDg~tly~a------DT~~~~i~r~~~d~~~g~~~~~~~~~~~~-~~~G~PDG~~vDadG~lw~~a~~~g--- 234 (307)
T COG3386 165 PNGLAFSPDGKTLYVA------DTPANRIHRYDLDPATGPIGGRRGFVDFD-EEPGLPDGMAVDADGNLWVAAVWGG--- 234 (307)
T ss_pred cCceEECCCCCEEEEE------eCCCCeEEEEecCcccCccCCcceEEEcc-CCCCCCCceEEeCCCCEEEecccCC---
Confidence 1111222233 77777 334577888876531 0 11111 1111222233345788887654432
Q ss_pred cccceEEEEECC
Q 013929 287 KVLTCGEEYDLE 298 (433)
Q Consensus 287 ~~~~~v~~yd~~ 298 (433)
..+.+|++.
T Consensus 235 ---~~v~~~~pd 243 (307)
T COG3386 235 ---GRVVRFNPD 243 (307)
T ss_pred ---ceEEEECCC
Confidence 357889998
No 170
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=63.41 E-value=61 Score=33.00 Aligned_cols=107 Identities=14% Similarity=0.169 Sum_probs=56.2
Q ss_pred CEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeE-E
Q 013929 177 TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWK-V 255 (433)
Q Consensus 177 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~ 255 (433)
-.||+.| ...++|++|...++|-.--....+-..+....--+.|+++||.+ ..|+.+|+.+.+-- .
T Consensus 146 cDly~~g-------sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~------g~VEfwDpR~ksrv~~ 212 (703)
T KOG2321|consen 146 CDLYLVG-------SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTED------GVVEFWDPRDKSRVGT 212 (703)
T ss_pred ccEEEee-------cCcceEEEEccccccccccccccccceeeeecCccceEEecccC------ceEEEecchhhhhhee
Confidence 4577766 23479999999999853211111111122222234677888755 34788888765421 1
Q ss_pred ------cCCCCCCCcc--eeEEEE-CCEEEEEccccCCCCcccceEEEEECCCCce
Q 013929 256 ------LPSMKNPRKM--CSGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETW 302 (433)
Q Consensus 256 ------~~~~p~~r~~--~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W 302 (433)
+...|..-.. .++..+ ++-|.+.-|.. ...+++||+.+.+=
T Consensus 213 l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts------~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 213 LDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS------TGSVLIYDLRASKP 262 (703)
T ss_pred eecccccCCCccccccCcceEEEecCCceeEEeecc------CCcEEEEEcccCCc
Confidence 2223322111 233333 43555544433 23478999987653
No 171
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=61.51 E-value=1.5e+02 Score=28.27 Aligned_cols=91 Identities=9% Similarity=0.156 Sum_probs=56.3
Q ss_pred CceEEEeCCCCCeEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCc
Q 013929 241 SSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTE 320 (433)
Q Consensus 241 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 320 (433)
.++-+++..|... +..+...+.+-+++-++|++.|-|..+ ++|-.||.+.+.--++-. +....
T Consensus 340 RTikvW~~st~ef--vRtl~gHkRGIAClQYr~rlvVSGSSD-------ntIRlwdi~~G~cLRvLe---GHEeL----- 402 (499)
T KOG0281|consen 340 RTIKVWSTSTCEF--VRTLNGHKRGIACLQYRDRLVVSGSSD-------NTIRLWDIECGACLRVLE---GHEEL----- 402 (499)
T ss_pred ceEEEEeccceee--ehhhhcccccceehhccCeEEEecCCC-------ceEEEEeccccHHHHHHh---chHHh-----
Confidence 3455666665543 223333455556677899999987655 467888888876433311 10000
Q ss_pred CCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCC
Q 013929 321 MPASAEAPPLVAVVNNELYAADYADMEVRKYDKERR 356 (433)
Q Consensus 321 ~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~ 356 (433)
--.+-++++=.+-|+..+.|.+||..+.
T Consensus 403 --------vRciRFd~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 403 --------VRCIRFDNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred --------hhheeecCceeeeccccceEEEEecccc
Confidence 0245677877888888888988887653
No 172
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=61.46 E-value=1.9e+02 Score=29.28 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=43.1
Q ss_pred EEECCEEEEEecCCCeEEEEeCCCC-----cEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeec
Q 013929 332 AVVNNELYAADYADMEVRKYDKERR-----LWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVP 406 (433)
Q Consensus 332 ~~~~~~ly~~gg~~~~i~~yd~~~~-----~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~ 406 (433)
+..+|++.+--|..+.+.+||+..- .|+-+ |..-.. .-++..-+++|++.|-...++.....+ +.|
T Consensus 372 FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL---~t~~~~----tdc~FSPd~kli~TGtS~~~~~~~g~L--~f~ 442 (641)
T KOG0772|consen 372 FSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGL---PTPFPG----TDCCFSPDDKLILTGTSAPNGMTAGTL--FFF 442 (641)
T ss_pred eccccchhhhccCCCceeeeeccccccchhhhcCC---CccCCC----CccccCCCceEEEecccccCCCCCceE--EEE
Confidence 4457887777777888888887653 34443 332221 123445688999888654433233323 344
Q ss_pred CCCCCCceEecccC
Q 013929 407 SEGPPQWNLLARKQ 420 (433)
Q Consensus 407 ~~~~~~W~~v~~~p 420 (433)
+ +.+...|..++
T Consensus 443 d--~~t~d~v~ki~ 454 (641)
T KOG0772|consen 443 D--RMTLDTVYKID 454 (641)
T ss_pred e--ccceeeEEEec
Confidence 3 24455555544
No 173
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=61.37 E-value=1.5e+02 Score=28.05 Aligned_cols=172 Identities=15% Similarity=0.130 Sum_probs=71.4
Q ss_pred CCEEEEECCCCCCcccceeEEEEEcCCCceecCCC-CCCC-cc-eeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCC
Q 013929 176 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMR-MNAP-RC-LFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT 252 (433)
Q Consensus 176 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~-~p~~-r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 252 (433)
.+.-|++|-. ..++.=+---.+|+.... .+.+ .. ...+...++..|++|.. ..+..-.=.-.+
T Consensus 27 ~~~G~~VG~~-------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~-------g~ll~T~DgG~t 92 (302)
T PF14870_consen 27 PNHGWAVGAY-------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP-------GLLLHTTDGGKT 92 (302)
T ss_dssp SS-EEEEETT-------TEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEET-------TEEEEESSTTSS
T ss_pred CCEEEEEecC-------CEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCC-------ceEEEecCCCCC
Confidence 4567777643 123322222347887642 2222 22 23444557888988631 112222223457
Q ss_pred eEEcC-CCCCCCcceeEE-EECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCE
Q 013929 253 WKVLP-SMKNPRKMCSGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPL 330 (433)
Q Consensus 253 W~~~~-~~p~~r~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~ 330 (433)
|+.++ +.+.+...+... .-++.+.++|... .|++=.-.-.+|+.+..-...-.. .
T Consensus 93 W~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G--------~iy~T~DgG~tW~~~~~~~~gs~~---------------~ 149 (302)
T PF14870_consen 93 WERVPLSSKLPGSPFGITALGDGSAELAGDRG--------AIYRTTDGGKTWQAVVSETSGSIN---------------D 149 (302)
T ss_dssp -EE----TT-SS-EEEEEEEETTEEEEEETT----------EEEESSTTSSEEEEE-S----EE---------------E
T ss_pred cEEeecCCCCCCCeeEEEEcCCCcEEEEcCCC--------cEEEeCCCCCCeeEcccCCcceeE---------------e
Confidence 99986 223333334443 3456677765332 233333334589987532221111 2
Q ss_pred EE-EECCEEEEEecCCCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEc
Q 013929 331 VA-VVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIG 389 (433)
Q Consensus 331 ~~-~~~~~ly~~gg~~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~G 389 (433)
+. .-+|++++++...+-+...|+-...|+........+.. .....-++.|+++.
T Consensus 150 ~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq-----~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 150 ITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQ-----SMGFSPDGNLWMLA 204 (302)
T ss_dssp EEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EE-----EEEE-TTS-EEEEE
T ss_pred EEECCCCcEEEEECcccEEEEecCCCccceEEccCccceeh-----hceecCCCCEEEEe
Confidence 22 33667666764444455779888899988755444421 22223456776654
No 174
>PTZ00420 coronin; Provisional
Probab=60.78 E-value=2.1e+02 Score=29.71 Aligned_cols=153 Identities=10% Similarity=0.059 Sum_probs=73.7
Q ss_pred EEEEECCCCCCcccceeEEEEEcCCCcee-cCCCCCCCcceeeEEE-eCCEEEEEccCCCCCCcCCceEEEeCCCCCeEE
Q 013929 178 ELLVFGRELTAHHISHVIYRYSILTNSWS-SGMRMNAPRCLFGSAS-LGEIAILAGGSDLEGNILSSAEMYNSETQTWKV 255 (433)
Q Consensus 178 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 255 (433)
.+++.||. ...+.+||..+++=. .+. ......+++. .++.+++.++.+ ..+.+||+.++.=
T Consensus 139 ~iLaSgS~------DgtIrIWDl~tg~~~~~i~---~~~~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg~~-- 201 (568)
T PTZ00420 139 YIMCSSGF------DSFVNIWDIENEKRAFQIN---MPKKLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQEI-- 201 (568)
T ss_pred eEEEEEeC------CCeEEEEECCCCcEEEEEe---cCCcEEEEEECCCCCEEEEEecC------CEEEEEECCCCcE--
Confidence 45555554 235788998876521 111 1111122222 366777766533 3588999987642
Q ss_pred cCCCCCCCcc--eeEEE-----ECCEEEEEccccCCCCcccceEEEEECCCC-ceEecCCCCCCCCCCCCCCcCCCCcCC
Q 013929 256 LPSMKNPRKM--CSGVF-----MDGKFYVIGGIGGSDSKVLTCGEEYDLETE-TWTEIPNMSPARGGAARGTEMPASAEA 327 (433)
Q Consensus 256 ~~~~p~~r~~--~~~~~-----~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~-~W~~~~~~p~~r~~~~~~~~~~~~~~~ 327 (433)
+..+...... ...+. -++...+.+|.++. ....+..||+.+. .-...-.+... .+. .
T Consensus 202 i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~---~~R~VkLWDlr~~~~pl~~~~ld~~-~~~----L------- 266 (568)
T PTZ00420 202 ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN---NMREMKLWDLKNTTSALVTMSIDNA-SAP----L------- 266 (568)
T ss_pred EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC---CccEEEEEECCCCCCceEEEEecCC-ccc----e-------
Confidence 2111111110 11111 24455666665521 2235788998742 11100001000 010 0
Q ss_pred CCEEEEECCEEEEEecCCCeEEEEeCCCCcEEEec
Q 013929 328 PPLVAVVNNELYAADYADMEVRKYDKERRLWFTIG 362 (433)
Q Consensus 328 ~~~~~~~~~~ly~~gg~~~~i~~yd~~~~~W~~v~ 362 (433)
.+......+.+|+.|...+.|..|+...+.-..+.
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence 00111224788999877888999998777544443
No 175
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=60.63 E-value=1.5e+02 Score=28.03 Aligned_cols=189 Identities=10% Similarity=0.112 Sum_probs=85.6
Q ss_pred eeEEEeCCEEEEEccCC--C--CCCcCCceEEEe-CCCCCeEEcCCC---C--CCC---cceeEEEECCEEEEEccccCC
Q 013929 218 FGSASLGEIAILAGGSD--L--EGNILSSAEMYN-SETQTWKVLPSM---K--NPR---KMCSGVFMDGKFYVIGGIGGS 284 (433)
Q Consensus 218 ~~~~~~~~~iyv~GG~~--~--~~~~~~~~~~yd-~~t~~W~~~~~~---p--~~r---~~~~~~~~~g~lyv~GG~~~~ 284 (433)
++++.+++.|+++.... . .......+..|. ....+|+..... . ..| ...+.++-+++||++-|....
T Consensus 2 PSLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~ 81 (310)
T PF13859_consen 2 PSLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSR 81 (310)
T ss_dssp EEEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS
T ss_pred CCEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEec
Confidence 57788899999987532 1 111222233343 345579764311 1 111 234667789999988654322
Q ss_pred -CCcccceEEEEE--CCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEE-CCEEEE-E-e----cC-CCeEEEEeC
Q 013929 285 -DSKVLTCGEEYD--LETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYA-A-D----YA-DMEVRKYDK 353 (433)
Q Consensus 285 -~~~~~~~v~~yd--~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~ly~-~-g----g~-~~~i~~yd~ 353 (433)
.....-.+..+. ....+|.....++........ . - -+.+.+-++. ||.|.+ + + +. .-++.+|-.
T Consensus 82 ~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~--~--f-iggGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~ 156 (310)
T PF13859_consen 82 SAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWK--Q--F-IGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYST 156 (310)
T ss_dssp --SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEE--E--E-EE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEES
T ss_pred cccccccceeeeeccCCcceeeecccCCchhccccc--e--e-ecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEEC
Confidence 111122233332 233369887655432111000 0 0 0000122333 554443 1 1 12 146788877
Q ss_pred C-CCcEEEeccCCCcccCCCcccEEEEEe-CCEEEEEcCCCCCCCCeeEEEEeecCCCCCCceE-ecccC
Q 013929 354 E-RRLWFTIGRLPERANSMNGWGLAFRAC-GDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNL-LARKQ 420 (433)
Q Consensus 354 ~-~~~W~~v~~lp~~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~W~~-v~~~p 420 (433)
. ...|+--..++...- ....++.- +++|+++.-+++. ...+|+-..+-.+|++ ++.++
T Consensus 157 d~g~~W~lskg~s~~gC----~~psv~EWe~gkLlM~~~c~~g-----~rrVYeS~DmG~tWtea~gtls 217 (310)
T PF13859_consen 157 DDGKTWKLSKGMSPAGC----SDPSVVEWEDGKLLMMTACDDG-----RRRVYESGDMGTTWTEALGTLS 217 (310)
T ss_dssp STTSS-EE-S----TT-----EEEEEEEE-TTEEEEEEE-TTS--------EEEESSTTSS-EE-TTTTT
T ss_pred CCccceEeccccCCCCc----ceEEEEeccCCeeEEEEecccc-----eEEEEEEcccceehhhccCccc
Confidence 7 678997766664331 12566677 7899999866442 2457777778889998 66665
No 176
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=60.30 E-value=1.8e+02 Score=28.70 Aligned_cols=196 Identities=11% Similarity=0.074 Sum_probs=91.1
Q ss_pred EEECCEEEEECCCCCCcccceeEEEEEcCCCceecCCCC---CCCcceeeEEEe-CCEEEEEccCCCCCCcCCceEEEeC
Q 013929 173 LAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRM---NAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNS 248 (433)
Q Consensus 173 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~ 248 (433)
...++..|++|-. ..++.=.-.-++|++++.. |.. ....... ++.++++|.. ..+++-+-
T Consensus 143 ~f~~~~g~~vG~~-------G~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~-------G~v~~S~D 206 (398)
T PLN00033 143 SFKGKEGWIIGKP-------AILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE-------GAIYVTSN 206 (398)
T ss_pred EEECCEEEEEcCc-------eEEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc-------ceEEEECC
Confidence 3457788888733 1233323234689877542 322 2223333 4457777621 22444444
Q ss_pred CCCCeEEcCCCC----CCC--------------cceeEE-EECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCC
Q 013929 249 ETQTWKVLPSMK----NPR--------------KMCSGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMS 309 (433)
Q Consensus 249 ~t~~W~~~~~~p----~~r--------------~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p 309 (433)
.-.+|+.+...+ ..+ ..+.+. .-++.++++|-.. +-+...|.....|+.+....
T Consensus 207 ~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G-------~~~~s~d~G~~~W~~~~~~~ 279 (398)
T PLN00033 207 AGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG-------NFYLTWEPGQPYWQPHNRAS 279 (398)
T ss_pred CCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc-------cEEEecCCCCcceEEecCCC
Confidence 456898762111 100 111112 2345555554322 11122444444599886433
Q ss_pred CCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCCcEE--EeccCCCcccCCCcccEEEEE-eCCEEE
Q 013929 310 PARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWF--TIGRLPERANSMNGWGLAFRA-CGDRLI 386 (433)
Q Consensus 310 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~~W~--~v~~lp~~~~~~~~~~~~~~~-~~~~l~ 386 (433)
..+... .....++.++++|. .+.+..-+.....|+ .+..++..... ... ..+.. -++.++
T Consensus 280 ~~~l~~--------------v~~~~dg~l~l~g~-~G~l~~S~d~G~~~~~~~f~~~~~~~~~-~~l-~~v~~~~d~~~~ 342 (398)
T PLN00033 280 ARRIQN--------------MGWRADGGLWLLTR-GGGLYVSKGTGLTEEDFDFEEADIKSRG-FGI-LDVGYRSKKEAW 342 (398)
T ss_pred ccceee--------------eeEcCCCCEEEEeC-CceEEEecCCCCcccccceeecccCCCC-cce-EEEEEcCCCcEE
Confidence 222221 23446788888874 455655555555553 23222222100 000 22323 366888
Q ss_pred EEcCCCCCCCCeeEEEEeecCCCCCCceEec
Q 013929 387 VIGGPKASGEGFIELNSWVPSEGPPQWNLLA 417 (433)
Q Consensus 387 v~GG~~~~~~~~~~~~~~~~~~~~~~W~~v~ 417 (433)
++|.... ++.....-.+|+.+.
T Consensus 343 a~G~~G~---------v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 343 AAGGSGI---------LLRSTDGGKSWKRDK 364 (398)
T ss_pred EEECCCc---------EEEeCCCCcceeEcc
Confidence 8886411 223333456788765
No 177
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=58.76 E-value=2.3e+02 Score=29.50 Aligned_cols=89 Identities=15% Similarity=0.170 Sum_probs=44.0
Q ss_pred EEEECCEEEEEecCCCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCC-EEEEEcCCCCCCCCeeEEEEeecCCC
Q 013929 331 VAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGD-RLIVIGGPKASGEGFIELNSWVPSEG 409 (433)
Q Consensus 331 ~~~~~~~ly~~gg~~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~~~ 409 (433)
+..+.....+-|-..+.|..||....+-.+--..-... -.++++.++ .-++.+|.+. .+..|.....
T Consensus 210 v~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~ad------Vl~Lav~~~~d~vfsaGvd~------~ii~~~~~~~ 277 (691)
T KOG2048|consen 210 VLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDAD------VLALAVADNEDRVFSAGVDP------KIIQYSLTTN 277 (691)
T ss_pred EEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcc------eeEEEEcCCCCeEEEccCCC------ceEEEEecCC
Confidence 33444555555656788999998877643322111111 144444433 4444455532 2444555445
Q ss_pred CCCceEeccc-CCCcEEEEEEEe
Q 013929 410 PPQWNLLARK-QSANFVYNCAVM 431 (433)
Q Consensus 410 ~~~W~~v~~~-p~~~~~~~~~v~ 431 (433)
..+|....+- -++...-+-|+.
T Consensus 278 ~~~wv~~~~r~~h~hdvrs~av~ 300 (691)
T KOG2048|consen 278 KSEWVINSRRDLHAHDVRSMAVI 300 (691)
T ss_pred ccceeeeccccCCcccceeeeee
Confidence 5568766542 234443444443
No 178
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=58.06 E-value=2e+02 Score=28.44 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=31.2
Q ss_pred ECCEEEEEecCCCeEEEEeCCCCcEEEecc---CCCcccCCCcccEEEE-EeCCEEEEEcC
Q 013929 334 VNNELYAADYADMEVRKYDKERRLWFTIGR---LPERANSMNGWGLAFR-ACGDRLIVIGG 390 (433)
Q Consensus 334 ~~~~ly~~gg~~~~i~~yd~~~~~W~~v~~---lp~~~~~~~~~~~~~~-~~~~~l~v~GG 390 (433)
-++.++++|. .+.+..-....++|+.+.. .+... ..+. .-+++.|+.|-
T Consensus 337 ~d~~~~a~G~-~G~v~~s~D~G~tW~~~~~~~~~~~~l-------y~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 337 SKKEAWAAGG-SGILLRSTDGGKSWKRDKGADNIAANL-------YSVKFFDDKKGFVLGN 389 (398)
T ss_pred CCCcEEEEEC-CCcEEEeCCCCcceeEccccCCCCcce-------eEEEEcCCCceEEEeC
Confidence 3678888874 4567776777889999763 23222 2233 34578888884
No 179
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=57.89 E-value=2.6e+02 Score=29.76 Aligned_cols=151 Identities=15% Similarity=0.198 Sum_probs=79.5
Q ss_pred eEEEeC--CEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEE
Q 013929 219 GSASLG--EIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYD 296 (433)
Q Consensus 219 ~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd 296 (433)
..++++ |.=+.+|+.. +..+.+|+-.+.+.-.-..-...|.......-+|.+.+.|+.++ .|-+||
T Consensus 311 ~t~~~N~tGDWiA~g~~k-----lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg-------KVKvWn 378 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCSK-----LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG-------KVKVWN 378 (893)
T ss_pred eEEEecccCCEEEEcCCc-----cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC-------cEEEEe
Confidence 334444 5555666532 34566666555544221111122322223345788888888763 467788
Q ss_pred CCCCce-EecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc-EEEeccCCCcccCCCcc
Q 013929 297 LETETW-TEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRL-WFTIGRLPERANSMNGW 374 (433)
Q Consensus 297 ~~t~~W-~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~~-W~~v~~lp~~~~~~~~~ 374 (433)
..++.- ..+........+ ..+...|+..+--.-.+.|..||..... .+.. ..|.+..
T Consensus 379 ~~SgfC~vTFteHts~Vt~---------------v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTf-t~P~p~Q----- 437 (893)
T KOG0291|consen 379 TQSGFCFVTFTEHTSGVTA---------------VQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTF-TSPEPIQ----- 437 (893)
T ss_pred ccCceEEEEeccCCCceEE---------------EEEEecCCEEEEeecCCeEEeeeecccceeeee-cCCCcee-----
Confidence 877532 222211111111 1233455555544456788889887643 3333 3454443
Q ss_pred cEEEEEeC--CEEEEEcCCCCCCCCeeEEEEeecCC
Q 013929 375 GLAFRACG--DRLIVIGGPKASGEGFIELNSWVPSE 408 (433)
Q Consensus 375 ~~~~~~~~--~~l~v~GG~~~~~~~~~~~~~~~~~~ 408 (433)
+++++++ |.|++.|+.+. -++.+|..+.
T Consensus 438 -fscvavD~sGelV~AG~~d~-----F~IfvWS~qT 467 (893)
T KOG0291|consen 438 -FSCVAVDPSGELVCAGAQDS-----FEIFVWSVQT 467 (893)
T ss_pred -eeEEEEcCCCCEEEeeccce-----EEEEEEEeec
Confidence 5556666 89999998743 4677887743
No 180
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=56.34 E-value=1.9e+02 Score=27.75 Aligned_cols=132 Identities=11% Similarity=0.016 Sum_probs=57.8
Q ss_pred ceEEEEecCCCcEE---eCCCCCCccccccCCceEEEE-CCEEEEECCCCCCcccceeEEEEEcCCCceec-CC--C---
Q 013929 141 LEWEAFDPIRRRWM---HLPRMTSNECFMCSDKESLAV-GTELLVFGRELTAHHISHVIYRYSILTNSWSS-GM--R--- 210 (433)
Q Consensus 141 ~~~~~yd~~~~~W~---~l~~~p~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~--~--- 210 (433)
.-+.+||+.+-.-. .+|+.|............... +..+||+-= ....++-+-|...++--. ++ .
T Consensus 67 Dvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~-----TPa~SVtVVDl~~~kvv~ei~~PGC~~ 141 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF-----TPATSVTVVDLAAKKVVGEIDTPGCWL 141 (342)
T ss_dssp EEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE-----SSSEEEEEEETTTTEEEEEEEGTSEEE
T ss_pred eEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEcc-----CCCCeEEEEECCCCceeeeecCCCEEE
Confidence 45788999885432 334322211111111122222 345666532 356678899999887632 21 1
Q ss_pred -CCCCcceeeEEEeCCEEEEEc-cCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEECCEEEEE
Q 013929 211 -MNAPRCLFGSASLGEIAILAG-GSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVI 278 (433)
Q Consensus 211 -~p~~r~~~~~~~~~~~iyv~G-G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~ 278 (433)
.|.+-..+.+..-+|.+..+. +-++.. ......+|++..+-...-+........+-...++|++|-+
T Consensus 142 iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~-~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~ 210 (342)
T PF06433_consen 142 IYPSGNRGFSMLCGDGSLLTVTLDADGKE-AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSA 210 (342)
T ss_dssp EEEEETTEEEEEETTSCEEEEEETSTSSE-EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEE
T ss_pred EEecCCCceEEEecCCceEEEEECCCCCE-eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEE
Confidence 122222344444455444332 112221 1233457777776432222111111122335677888875
No 181
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=55.82 E-value=2e+02 Score=27.73 Aligned_cols=33 Identities=6% Similarity=-0.007 Sum_probs=25.6
Q ss_pred EEEEECCEEEEEecCCCeEEEEeCCCC-cEEEec
Q 013929 330 LVAVVNNELYAADYADMEVRKYDKERR-LWFTIG 362 (433)
Q Consensus 330 ~~~~~~~~ly~~gg~~~~i~~yd~~~~-~W~~v~ 362 (433)
+..+..+.+|+.||..+.++.||.+++ ..+.+.
T Consensus 365 tl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~ 398 (460)
T KOG0285|consen 365 TLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQ 398 (460)
T ss_pred eeeeccCceEEEcCCceEEEEEecCcCccccccc
Confidence 455667788999999999999998887 455554
No 182
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=55.62 E-value=2.2e+02 Score=28.33 Aligned_cols=145 Identities=13% Similarity=0.045 Sum_probs=71.2
Q ss_pred eEEEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEECC
Q 013929 194 VIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDG 273 (433)
Q Consensus 194 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g 273 (433)
.++++|..+++=..+...+..-..+...-.+.+|.+..-.+ ...++|++|..+..=..+...... ..+....-+|
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rd----g~~~iy~~dl~~~~~~~Lt~~~gi-~~~Ps~spdG 293 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRD----GSPDIYLMDLDGKNLPRLTNGFGI-NTSPSWSPDG 293 (425)
T ss_pred eEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCC----CCccEEEEcCCCCcceecccCCcc-ccCccCCCCC
Confidence 46777777766544443222222222222233443333222 247899999998763333332221 1222333344
Q ss_pred E-EEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecC---CCeEE
Q 013929 274 K-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYA---DMEVR 349 (433)
Q Consensus 274 ~-lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~---~~~i~ 349 (433)
+ |+..-.+.| ...++.||++...=+++..-...... ....-+|+.+++-+. ...|.
T Consensus 294 ~~ivf~Sdr~G-----~p~I~~~~~~g~~~~riT~~~~~~~~---------------p~~SpdG~~i~~~~~~~g~~~i~ 353 (425)
T COG0823 294 SKIVFTSDRGG-----RPQIYLYDLEGSQVTRLTFSGGGNSN---------------PVWSPDGDKIVFESSSGGQWDID 353 (425)
T ss_pred CEEEEEeCCCC-----CcceEEECCCCCceeEeeccCCCCcC---------------ccCCCCCCEEEEEeccCCceeeE
Confidence 4 444432222 23689999988876665422111111 122223333333211 15688
Q ss_pred EEeCCCCc-EEEecc
Q 013929 350 KYDKERRL-WFTIGR 363 (433)
Q Consensus 350 ~yd~~~~~-W~~v~~ 363 (433)
.+|+.++. |+.+..
T Consensus 354 ~~~~~~~~~~~~lt~ 368 (425)
T COG0823 354 KNDLASGGKIRILTS 368 (425)
T ss_pred EeccCCCCcEEEccc
Confidence 99998877 988763
No 183
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=55.25 E-value=1.8e+02 Score=27.16 Aligned_cols=174 Identities=14% Similarity=0.139 Sum_probs=90.6
Q ss_pred ECCEEEEECCCCCCcccceeEEEEEcCCCcee---cC-CCCCCCcceeeEEEe-CCEEEEEccCCCCCCcCCceEEEeCC
Q 013929 175 VGTELLVFGRELTAHHISHVIYRYSILTNSWS---SG-MRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSE 249 (433)
Q Consensus 175 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~---~~-~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~ 249 (433)
..+.....||. .|.+-+|+..+..=. ++ ..++....+.+++.+ ++.-++-|. .-.+.-.+|.+
T Consensus 107 PSg~~VAcGGL------dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~S------GD~TCalWDie 174 (343)
T KOG0286|consen 107 PSGNFVACGGL------DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGS------GDMTCALWDIE 174 (343)
T ss_pred CCCCeEEecCc------CceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecC------CCceEEEEEcc
Confidence 35677788886 455788888865322 11 223434444444443 433333322 12446677888
Q ss_pred CCCeEEcCCCCCCCccee-------EEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCC
Q 013929 250 TQTWKVLPSMKNPRKMCS-------GVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMP 322 (433)
Q Consensus 250 t~~W~~~~~~p~~r~~~~-------~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~ 322 (433)
+..=... . .+|+ ....+++.||-||.+.. ...+|.....-.+ ..+..-+..
T Consensus 175 ~g~~~~~--f----~GH~gDV~slsl~p~~~ntFvSg~cD~~-------aklWD~R~~~c~q--tF~ghesDI------- 232 (343)
T KOG0286|consen 175 TGQQTQV--F----HGHTGDVMSLSLSPSDGNTFVSGGCDKS-------AKLWDVRSGQCVQ--TFEGHESDI------- 232 (343)
T ss_pred cceEEEE--e----cCCcccEEEEecCCCCCCeEEecccccc-------eeeeeccCcceeE--eeccccccc-------
Confidence 7653221 1 1221 11127899999998732 3567776653222 111111111
Q ss_pred CCcCCCCEE-EEECCEEEEEecCCCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCC
Q 013929 323 ASAEAPPLV-AVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGP 391 (433)
Q Consensus 323 ~~~~~~~~~-~~~~~~ly~~gg~~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~ 391 (433)
.++ ..-+|.-|+.|........||+..++=..+-.-+.... +.........|+|++.|..
T Consensus 233 ------Nsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~---gitSv~FS~SGRlLfagy~ 293 (343)
T KOG0286|consen 233 ------NSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC---GITSVAFSKSGRLLFAGYD 293 (343)
T ss_pred ------ceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC---CceeEEEcccccEEEeeec
Confidence 122 33367777788778888999998876433322111111 1113333567898888843
No 184
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=54.97 E-value=1.9e+02 Score=27.19 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=40.9
Q ss_pred EEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEE-ECCEEEEEecCCC
Q 013929 268 GVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAV-VNNELYAADYADM 346 (433)
Q Consensus 268 ~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~ 346 (433)
++..+..=.++||.++ .+-.||+.+..=..+..--.+... +.. .....+|.|+..+
T Consensus 60 c~F~d~~~~~~G~~dg-------~vr~~Dln~~~~~~igth~~~i~c----------------i~~~~~~~~vIsgsWD~ 116 (323)
T KOG1036|consen 60 CAFADESTIVTGGLDG-------QVRRYDLNTGNEDQIGTHDEGIRC----------------IEYSYEVGCVISGSWDK 116 (323)
T ss_pred eeccCCceEEEeccCc-------eEEEEEecCCcceeeccCCCceEE----------------EEeeccCCeEEEcccCc
Confidence 3445555566677663 478899998876666532222221 222 2234566788899
Q ss_pred eEEEEeCCC
Q 013929 347 EVRKYDKER 355 (433)
Q Consensus 347 ~i~~yd~~~ 355 (433)
.|..+|+.+
T Consensus 117 ~ik~wD~R~ 125 (323)
T KOG1036|consen 117 TIKFWDPRN 125 (323)
T ss_pred cEEEEeccc
Confidence 999999987
No 185
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=54.87 E-value=2.4e+02 Score=28.53 Aligned_cols=164 Identities=13% Similarity=0.077 Sum_probs=80.8
Q ss_pred eEEEEEcCCCceecCCCCCCCcceeeEEEe--CCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCC-CCcceeEEE
Q 013929 194 VIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKN-PRKMCSGVF 270 (433)
Q Consensus 194 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~-~r~~~~~~~ 270 (433)
.+|.++-.++.=+.+.++. +...+.+.+ +|..+++|-. ...+++||..+.. .+..+.. .....++..
T Consensus 198 ~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~------~g~v~iwD~~~~k--~~~~~~~~h~~rvg~la 267 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTS------DGTVQIWDVKEQK--KTRTLRGSHASRVGSLA 267 (484)
T ss_pred eEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeec------CCeEEEEehhhcc--ccccccCCcCceeEEEe
Confidence 4566666666544444433 334444444 4666777532 3568999988753 2333332 122223445
Q ss_pred ECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEE
Q 013929 271 MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRK 350 (433)
Q Consensus 271 ~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~ 350 (433)
-++.+...|..++ .+..+|.....=.. ..+..-+... +.-....++..+.-||.++.+.+
T Consensus 268 W~~~~lssGsr~~-------~I~~~dvR~~~~~~-~~~~~H~qeV------------CgLkws~d~~~lASGgnDN~~~I 327 (484)
T KOG0305|consen 268 WNSSVLSSGSRDG-------KILNHDVRISQHVV-STLQGHRQEV------------CGLKWSPDGNQLASGGNDNVVFI 327 (484)
T ss_pred ccCceEEEecCCC-------cEEEEEEecchhhh-hhhhccccee------------eeeEECCCCCeeccCCCccceEe
Confidence 5777888887663 24556654321000 0011111110 00112236777777889999999
Q ss_pred EeCCCCcEEEe-ccCCCcccCCCcccEEEEEeCCEEEEEcCCC
Q 013929 351 YDKERRLWFTI-GRLPERANSMNGWGLAFRACGDRLIVIGGPK 392 (433)
Q Consensus 351 yd~~~~~W~~v-~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~ 392 (433)
||.....+..- ....... ...+.+.....|+.+||..
T Consensus 328 wd~~~~~p~~~~~~H~aAV-----KA~awcP~q~~lLAsGGGs 365 (484)
T KOG0305|consen 328 WDGLSPEPKFTFTEHTAAV-----KALAWCPWQSGLLATGGGS 365 (484)
T ss_pred ccCCCccccEEEeccceee-----eEeeeCCCccCceEEcCCC
Confidence 99844333211 1111111 0133444556677777653
No 186
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=54.69 E-value=2.2e+02 Score=28.06 Aligned_cols=112 Identities=13% Similarity=0.188 Sum_probs=61.1
Q ss_pred CCEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcceeeEEEe--CCEEEEEccCCCCCCcCCceEEEeCCCCCe
Q 013929 176 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTW 253 (433)
Q Consensus 176 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 253 (433)
+|.|+..|-. ...+-+||..+.. .+...|..-.......+ ||+-.+. +.++ ..+..+|+++..
T Consensus 358 DgLifgtgt~------d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat-~add-----~~V~lwDLRKl~- 422 (506)
T KOG0289|consen 358 DGLIFGTGTP------DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLAT-AADD-----GSVKLWDLRKLK- 422 (506)
T ss_pred CceEEeccCC------CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEE-EecC-----CeEEEEEehhhc-
Confidence 6677766633 3357889988776 44544442222222222 4443333 2222 228889988765
Q ss_pred EEcCCCCCCCc-ceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCC
Q 013929 254 KVLPSMKNPRK-MCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSP 310 (433)
Q Consensus 254 ~~~~~~p~~r~-~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~ 310 (433)
.+...+.+-. ......+ -|...+++|.+ -.|+.|+-.+..|+++...+.
T Consensus 423 -n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~-------l~Vy~~~k~~k~W~~~~~~~~ 474 (506)
T KOG0289|consen 423 -NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD-------LQVYICKKKTKSWTEIKELAD 474 (506)
T ss_pred -ccceeeccccccceeEEEcCCCCeEEeecce-------eEEEEEecccccceeeehhhh
Confidence 2222222221 2222333 35666666543 346788888999999976554
No 187
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=53.10 E-value=36 Score=25.60 Aligned_cols=24 Identities=13% Similarity=-0.018 Sum_probs=18.1
Q ss_pred CCeEEEEeCCCCcEEEec-cCCCcc
Q 013929 345 DMEVRKYDKERRLWFTIG-RLPERA 368 (433)
Q Consensus 345 ~~~i~~yd~~~~~W~~v~-~lp~~~ 368 (433)
++.++.|||.+++.+.+. .|..+.
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L~fpN 60 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGLYFPN 60 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEESSEE
T ss_pred CcCEEEEECCCCeEEEehhCCCccC
Confidence 378999999999998774 555443
No 188
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=53.02 E-value=1.8e+02 Score=26.53 Aligned_cols=133 Identities=17% Similarity=0.158 Sum_probs=63.8
Q ss_pred ceeEEEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEE
Q 013929 192 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM 271 (433)
Q Consensus 192 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 271 (433)
...+-.+|..|++-.+--.++.+.... =+..+|+|+.+. +-..+-.+|+.+-.=-+--.||......+ ..-
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSl-Evs~dG~ilTia-------~gssV~Fwdaksf~~lKs~k~P~nV~SAS-L~P 234 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSL-EVSQDGRILTIA-------YGSSVKFWDAKSFGLLKSYKMPCNVESAS-LHP 234 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCcce-eeccCCCEEEEe-------cCceeEEeccccccceeeccCcccccccc-ccC
Confidence 345777888777643221222221111 122355665552 22344455555432111123333222211 122
Q ss_pred CCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEE
Q 013929 272 DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKY 351 (433)
Q Consensus 272 ~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~y 351 (433)
+..+||.||.+. .++.||-.|+.= +........+. .+..-..-+|.+|..|...+.|..|
T Consensus 235 ~k~~fVaGged~-------~~~kfDy~TgeE--i~~~nkgh~gp-----------VhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 235 KKEFFVAGGEDF-------KVYKFDYNTGEE--IGSYNKGHFGP-----------VHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred CCceEEecCcce-------EEEEEeccCCce--eeecccCCCCc-----------eEEEEECCCCceeeccCCCceEEEE
Confidence 457999998762 367888888752 22211111111 0001223489999999888777665
Q ss_pred eC
Q 013929 352 DK 353 (433)
Q Consensus 352 d~ 353 (433)
..
T Consensus 295 Qt 296 (334)
T KOG0278|consen 295 QT 296 (334)
T ss_pred Ee
Confidence 43
No 189
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=52.77 E-value=2.1e+02 Score=27.25 Aligned_cols=100 Identities=15% Similarity=0.263 Sum_probs=52.4
Q ss_pred CEEEEE-CCEEEEEecCC--CeEEEEe--CCCCcEEEeccCCCc------ccCCCcccEEEE-Ee---CCEEEEEcCCCC
Q 013929 329 PLVAVV-NNELYAADYAD--MEVRKYD--KERRLWFTIGRLPER------ANSMNGWGLAFR-AC---GDRLIVIGGPKA 393 (433)
Q Consensus 329 ~~~~~~-~~~ly~~gg~~--~~i~~yd--~~~~~W~~v~~lp~~------~~~~~~~~~~~~-~~---~~~l~v~GG~~~ 393 (433)
+.++.. +|+|+++-... .....+- -...+|++....... .....+...++. .. +..++++.....
T Consensus 201 ~~i~el~dG~l~~~~R~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~g~~~ll~~~~~~ 280 (351)
T cd00260 201 CSVVELSDGKLYMYTRDNSGGRRPVYESRDMGTTWTEALGTLSRVWGNCPTRCGSGVQGSFITATIESGKKVMLLSRPNS 280 (351)
T ss_pred CEEEEecCCEEEEEEeeCCCCcEEEEEEcCCCcCcccCcCCccccccccccCCCCcccceEEEeEecCCCEEEEEeCCCC
Confidence 367777 89998875332 3333332 234689987643321 000111112222 22 446777775433
Q ss_pred CCCCeeEEEEeecCCCCCCceEecccCCCc--EEEEEE
Q 013929 394 SGEGFIELNSWVPSEGPPQWNLLARKQSAN--FVYNCA 429 (433)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~W~~v~~~p~~~--~~~~~~ 429 (433)
. .......+|.-+....+|..+..+..+. ..|++.
T Consensus 281 ~-~~R~~l~l~~s~d~g~~w~~~~~i~~~~~~~~Ys~~ 317 (351)
T cd00260 281 P-DSRSNLTLWLTDNNGSRWLDVGPISNGTDGSGYSTL 317 (351)
T ss_pred C-CCCCceEEEEEeCCCceEEeeeeeccCCCceEEeee
Confidence 2 2334455565544456899988776555 555543
No 190
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=52.13 E-value=2.3e+02 Score=27.34 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=59.7
Q ss_pred CCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCccee--EEEECCEEEEEccccCCCCcccceEEEEECCCC-
Q 013929 224 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCS--GVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETE- 300 (433)
Q Consensus 224 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~--~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~- 300 (433)
++.+.+-||-++ ..++++..++.|- ..++.....-+ ....+|.+...|+.+| .+.+|+..++
T Consensus 75 ~~~l~aTGGgDD------~AflW~~~~ge~~--~eltgHKDSVt~~~FshdgtlLATGdmsG-------~v~v~~~stg~ 139 (399)
T KOG0296|consen 75 NNNLVATGGGDD------LAFLWDISTGEFA--GELTGHKDSVTCCSFSHDGTLLATGDMSG-------KVLVFKVSTGG 139 (399)
T ss_pred CCceEEecCCCc------eEEEEEccCCcce--eEecCCCCceEEEEEccCceEEEecCCCc-------cEEEEEcccCc
Confidence 556777787553 3678888888752 22332222222 2346788888888774 3566666554
Q ss_pred -ceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc
Q 013929 301 -TWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRL 357 (433)
Q Consensus 301 -~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~~ 357 (433)
+|....++..- .. ..---...|++.|...+++|+|.+..+.
T Consensus 140 ~~~~~~~e~~di-eW---------------l~WHp~a~illAG~~DGsvWmw~ip~~~ 181 (399)
T KOG0296|consen 140 EQWKLDQEVEDI-EW---------------LKWHPRAHILLAGSTDGSVWMWQIPSQA 181 (399)
T ss_pred eEEEeecccCce-EE---------------EEecccccEEEeecCCCcEEEEECCCcc
Confidence 46554221110 00 0000135678888888999999988863
No 191
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=52.02 E-value=3.2e+02 Score=29.09 Aligned_cols=168 Identities=14% Similarity=0.114 Sum_probs=80.7
Q ss_pred eEEEEEcCCCceecCCCCCCCc-ceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEE--
Q 013929 194 VIYRYSILTNSWSSGMRMNAPR-CLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF-- 270 (433)
Q Consensus 194 ~~~~yd~~t~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~-- 270 (433)
.+.+||..+++-.+.=.....| .-++....++.+.++=|+.+ ..+.+|+..+. .+ +....+|..++
T Consensus 44 ~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaD-----GsVqif~~~s~---~~---~~tfngHK~AVt~ 112 (888)
T KOG0306|consen 44 QVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYAD-----GSVQIFSLESE---EI---LITFNGHKAAVTT 112 (888)
T ss_pred cEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecC-----ceEEeeccCCC---ce---eeeecccccceEE
Confidence 5889999988543221122223 23344444554444434332 23677777765 11 11122333222
Q ss_pred ----ECCEEEEEccccCCCCcccceEEEEECCCCceE-ecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCC
Q 013929 271 ----MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWT-EIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD 345 (433)
Q Consensus 271 ----~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~-~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~ 345 (433)
..|..++-||.++ ++.+||+....=. ++..-...... ..+.-+..+.+--+-.
T Consensus 113 l~fd~~G~rlaSGskDt-------~IIvwDlV~E~Gl~rL~GHkd~iT~---------------~~F~~~~~~lvS~sKD 170 (888)
T KOG0306|consen 113 LKFDKIGTRLASGSKDT-------DIIVWDLVGEEGLFRLRGHKDSITQ---------------ALFLNGDSFLVSVSKD 170 (888)
T ss_pred EEEcccCceEeecCCCc-------cEEEEEeccceeeEEeecchHHHhH---------------HhccCCCeEEEEeccC
Confidence 2466677777663 4678887654311 11110111111 1222235666655667
Q ss_pred CeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecC
Q 013929 346 MEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPS 407 (433)
Q Consensus 346 ~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~ 407 (433)
+-|..||.++..-.+.- -..+.. --+++..+ ++.|.+|.+ .++.+|++.
T Consensus 171 s~iK~WdL~tqhCf~Th--vd~r~E----iw~l~~~~-~~lvt~~~d------se~~v~~L~ 219 (888)
T KOG0306|consen 171 SMIKFWDLETQHCFETH--VDHRGE----IWALVLDE-KLLVTAGTD------SELKVWELA 219 (888)
T ss_pred ceEEEEecccceeeeEE--ecccce----EEEEEEec-ceEEEEecC------CceEEEEee
Confidence 78888999887644332 111111 12344444 555555542 236677663
No 192
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=50.74 E-value=2e+02 Score=28.20 Aligned_cols=124 Identities=15% Similarity=0.201 Sum_probs=72.1
Q ss_pred EECCEEEEEccccCCCCcccceEEEEECCCCceEec-CCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeE
Q 013929 270 FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEI-PNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEV 348 (433)
Q Consensus 270 ~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~-~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i 348 (433)
-.+|.+...||.+... -++|+.++.=..+ ..-..+... ....-||...+.|+..+.+
T Consensus 312 ~~DGSL~~tGGlD~~~-------RvWDlRtgr~im~L~gH~k~I~~---------------V~fsPNGy~lATgs~Dnt~ 369 (459)
T KOG0272|consen 312 QPDGSLAATGGLDSLG-------RVWDLRTGRCIMFLAGHIKEILS---------------VAFSPNGYHLATGSSDNTC 369 (459)
T ss_pred cCCCceeeccCccchh-------heeecccCcEEEEecccccceee---------------EeECCCceEEeecCCCCcE
Confidence 4689999999987322 4577777653322 111111111 1234478888889888989
Q ss_pred EEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecCCCCCCceEecccC-CCcEEEE
Q 013929 349 RKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQ-SANFVYN 427 (433)
Q Consensus 349 ~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~W~~v~~~p-~~~~~~~ 427 (433)
.+||.....= +..+|....-... +.+....|+.++..++++ .+++|.. ..|..+..|- +.....+
T Consensus 370 kVWDLR~r~~--ly~ipAH~nlVS~--Vk~~p~~g~fL~TasyD~------t~kiWs~----~~~~~~ksLaGHe~kV~s 435 (459)
T KOG0272|consen 370 KVWDLRMRSE--LYTIPAHSNLVSQ--VKYSPQEGYFLVTASYDN------TVKIWST----RTWSPLKSLAGHEGKVIS 435 (459)
T ss_pred EEeeeccccc--ceecccccchhhh--eEecccCCeEEEEcccCc------ceeeecC----CCcccchhhcCCccceEE
Confidence 9998876542 4556655432110 222223678888888754 3666755 5688887764 3333344
Q ss_pred EE
Q 013929 428 CA 429 (433)
Q Consensus 428 ~~ 429 (433)
+.
T Consensus 436 ~D 437 (459)
T KOG0272|consen 436 LD 437 (459)
T ss_pred EE
Confidence 43
No 193
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=50.49 E-value=31 Score=21.12 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=17.2
Q ss_pred EEEEECCEEEEEecCCCeEEEEeCCC
Q 013929 330 LVAVVNNELYAADYADMEVRKYDKER 355 (433)
Q Consensus 330 ~~~~~~~~ly~~gg~~~~i~~yd~~~ 355 (433)
+.++.++.+|+.+ ..+.++++|+++
T Consensus 16 ~~~v~~g~vyv~~-~dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGT-GDGNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE--TTSEEEEEETT-
T ss_pred CCEEECCEEEEEc-CCCEEEEEeCCC
Confidence 4677788888775 478899999864
No 194
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=49.91 E-value=1.5e+02 Score=25.77 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=45.8
Q ss_pred CCEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEE
Q 013929 176 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKV 255 (433)
Q Consensus 176 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 255 (433)
+.++.++-|. ....+.+||.....-.. ++........-.-+|+.+++||..+. ...+.+||..+ ++.
T Consensus 71 g~~favi~g~-----~~~~v~lyd~~~~~i~~---~~~~~~n~i~wsP~G~~l~~~g~~n~---~G~l~~wd~~~--~~~ 137 (194)
T PF08662_consen 71 GNEFAVIYGS-----MPAKVTLYDVKGKKIFS---FGTQPRNTISWSPDGRFLVLAGFGNL---NGDLEFWDVRK--KKK 137 (194)
T ss_pred CCEEEEEEcc-----CCcccEEEcCcccEeEe---ecCCCceEEEECCCCCEEEEEEccCC---CcEEEEEECCC--CEE
Confidence 4556555443 22267889986333222 32222222223347788888887532 25688999984 444
Q ss_pred cCCCCCCCcceeEEEECCEEEEEcc
Q 013929 256 LPSMKNPRKMCSGVFMDGKFYVIGG 280 (433)
Q Consensus 256 ~~~~p~~r~~~~~~~~~g~lyv~GG 280 (433)
+.....+......-.-+|+.++...
T Consensus 138 i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 138 ISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred eeccccCcEEEEEEcCCCCEEEEEE
Confidence 4433322211111123565555543
No 195
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=49.57 E-value=1.7e+02 Score=26.00 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=48.1
Q ss_pred eEEEECCEEEEEccccCCCCcccceEEEEECCCCc--eEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecC
Q 013929 267 SGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYA 344 (433)
Q Consensus 267 ~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~ 344 (433)
+....+|+++.--|.-+ ...+.++|+.+++ |++--+ |+...+ -+++..++.+|.+...
T Consensus 50 GL~~~~g~i~esTG~yg-----~S~ir~~~L~~gq~~~s~~l~-~~~~Fg--------------EGit~~gd~~y~LTw~ 109 (262)
T COG3823 50 GLEYLDGHILESTGLYG-----FSKIRVSDLTTGQEIFSEKLA-PDTVFG--------------EGITKLGDYFYQLTWK 109 (262)
T ss_pred ceeeeCCEEEEeccccc-----cceeEEEeccCceEEEEeecC-Cccccc--------------cceeeccceEEEEEec
Confidence 45677888888877653 3468889998665 544222 223333 2689999999999877
Q ss_pred CCeEEEEeCCC
Q 013929 345 DMEVRKYDKER 355 (433)
Q Consensus 345 ~~~i~~yd~~~ 355 (433)
.+.-+.||+.+
T Consensus 110 egvaf~~d~~t 120 (262)
T COG3823 110 EGVAFKYDADT 120 (262)
T ss_pred cceeEEEChHH
Confidence 77888888765
No 196
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=49.19 E-value=2.1e+02 Score=26.14 Aligned_cols=142 Identities=15% Similarity=0.145 Sum_probs=73.0
Q ss_pred CCceEEEeCCCCCeEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCC
Q 013929 240 LSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGT 319 (433)
Q Consensus 240 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~ 319 (433)
-.++-.+|..|++=.+--.++.+... .-+..+|+|..+.- -..|--+|+.+-.--+--.||.....
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtS-lEvs~dG~ilTia~--------gssV~Fwdaksf~~lKs~k~P~nV~S----- 229 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTS-LEVSQDGRILTIAY--------GSSVKFWDAKSFGLLKSYKMPCNVES----- 229 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCcc-eeeccCCCEEEEec--------CceeEEeccccccceeeccCcccccc-----
Confidence 35677888888764332122222211 11234566655521 11234455544322222246655544
Q ss_pred cCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEE-EeCCEEEEEcCCCCCCCCe
Q 013929 320 EMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFR-ACGDRLIVIGGPKASGEGF 398 (433)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~-~~~~~l~v~GG~~~~~~~~ 398 (433)
+...-+..+|+.||....++.||..|+.=... . ...+.+.-+++- ..+|.+|..|-.++ +
T Consensus 230 ----------ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~--~---nkgh~gpVhcVrFSPdGE~yAsGSEDG----T 290 (334)
T KOG0278|consen 230 ----------ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS--Y---NKGHFGPVHCVRFSPDGELYASGSEDG----T 290 (334)
T ss_pred ----------ccccCCCceEEecCcceEEEEEeccCCceeee--c---ccCCCCceEEEEECCCCceeeccCCCc----e
Confidence 24445678999999888999999988863322 1 111111113332 35899999997633 2
Q ss_pred eEEEEeecCCCC--CCceEe
Q 013929 399 IELNSWVPSEGP--PQWNLL 416 (433)
Q Consensus 399 ~~~~~~~~~~~~--~~W~~v 416 (433)
+..|.-.+.. ..|.-+
T Consensus 291 --irlWQt~~~~~~~~~~~~ 308 (334)
T KOG0278|consen 291 --IRLWQTTPGKTYGLWKCV 308 (334)
T ss_pred --EEEEEecCCCchhhcccc
Confidence 4455443322 256544
No 197
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=48.94 E-value=2.4e+02 Score=26.68 Aligned_cols=184 Identities=13% Similarity=0.015 Sum_probs=87.8
Q ss_pred CCEEEEECCCCCCcccceeEEEEEcCCCcee-cCCCC-C----CCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCC
Q 013929 176 GTELLVFGRELTAHHISHVIYRYSILTNSWS-SGMRM-N----APRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSE 249 (433)
Q Consensus 176 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~~~-p----~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~ 249 (433)
-+.+-++||...+.-..+.+.+||-..++-. ++.-. | .-|..+-++++.++|||+-=.++ ...+..+|..
T Consensus 58 ~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n----~k~l~~~et~ 133 (346)
T KOG2111|consen 58 SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDN----PKLLHVIETR 133 (346)
T ss_pred hceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCC----hhheeeeecc
Confidence 3566677877667778889999995544321 22111 1 11445677777888888732111 2233444433
Q ss_pred CCCeEEcCCCCCCCcceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCC
Q 013929 250 TQTWKVLPSMKNPRKMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAP 328 (433)
Q Consensus 250 t~~W~~~~~~p~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~ 328 (433)
.| |..-++.+. .+..+.++-|.. ...+.+-|+...+-. + |.....|- ..
T Consensus 134 ~N----------PkGlC~~~~~~~k~~LafPg~k------~GqvQi~dL~~~~~~--~--p~~I~AH~----------s~ 183 (346)
T KOG2111|consen 134 SN----------PKGLCSLCPTSNKSLLAFPGFK------TGQVQIVDLASTKPN--A--PSIINAHD----------SD 183 (346)
T ss_pred cC----------CCceEeecCCCCceEEEcCCCc------cceEEEEEhhhcCcC--C--ceEEEccc----------Cc
Confidence 22 232333332 344566665544 234566666554321 1 11001110 00
Q ss_pred CEEEE--ECCEEEEEecCCC-eEEEEeCCCCcEE-Eec--cCCCc----ccCCCcccEEEEEeCCEEEEEcCCCC
Q 013929 329 PLVAV--VNNELYAADYADM-EVRKYDKERRLWF-TIG--RLPER----ANSMNGWGLAFRACGDRLIVIGGPKA 393 (433)
Q Consensus 329 ~~~~~--~~~~ly~~gg~~~-~i~~yd~~~~~W~-~v~--~lp~~----~~~~~~~~~~~~~~~~~l~v~GG~~~ 393 (433)
-+++. .+|.+...+...+ -|.+||..+++=. ++. .-+.. ..++..--.+++.-.|.|-+|+-...
T Consensus 184 Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 184 IACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred eeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 02222 3577777665443 4567888887532 221 00000 01111111445555677888886543
No 198
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=48.64 E-value=2.3e+02 Score=28.28 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=31.0
Q ss_pred CEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEE---ECCEEEEEccccCCCCcccceEEEEECCCCc
Q 013929 225 EIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF---MDGKFYVIGGIGGSDSKVLTCGEEYDLETET 301 (433)
Q Consensus 225 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~---~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~ 301 (433)
+.=++-+|++ ..+-.+|.+|++-..--. .. .-..++- -+.+++++||.++ .|..||+.++.
T Consensus 270 g~~fLS~sfD------~~lKlwDtETG~~~~~f~--~~-~~~~cvkf~pd~~n~fl~G~sd~-------ki~~wDiRs~k 333 (503)
T KOG0282|consen 270 GTSFLSASFD------RFLKLWDTETGQVLSRFH--LD-KVPTCVKFHPDNQNIFLVGGSDK-------KIRQWDIRSGK 333 (503)
T ss_pred CCeeeeeecc------eeeeeeccccceEEEEEe--cC-CCceeeecCCCCCcEEEEecCCC-------cEEEEeccchH
Confidence 3445555544 335678888876432111 00 0011111 1348999999773 35556666653
No 199
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=47.81 E-value=2.2e+02 Score=26.00 Aligned_cols=181 Identities=10% Similarity=0.059 Sum_probs=83.7
Q ss_pred eEEEEEcCCCceecCCCCCCCcceeeEEE--eCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEE
Q 013929 194 VIYRYSILTNSWSSGMRMNAPRCLFGSAS--LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM 271 (433)
Q Consensus 194 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 271 (433)
.+-.||..++.=..+...-.++....++. .+++-..-||.++. +-++|+..-.-+..-..+.+. -.++..
T Consensus 62 hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt------~kIWdlR~~~~qR~~~~~spV--n~vvlh 133 (311)
T KOG0315|consen 62 HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT------VKIWDLRSLSCQRNYQHNSPV--NTVVLH 133 (311)
T ss_pred eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce------EEEEeccCcccchhccCCCCc--ceEEec
Confidence 57889988765222222112222222222 36666666765543 556676653222211111111 122222
Q ss_pred CCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEE
Q 013929 272 DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKY 351 (433)
Q Consensus 272 ~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~y 351 (433)
-+.--++-|.. ...|.++|+.++...... +|..-.... ...+.-+|.+.+.....+..+++
T Consensus 134 pnQteLis~dq------sg~irvWDl~~~~c~~~l-iPe~~~~i~------------sl~v~~dgsml~a~nnkG~cyvW 194 (311)
T KOG0315|consen 134 PNQTELISGDQ------SGNIRVWDLGENSCTHEL-IPEDDTSIQ------------SLTVMPDGSMLAAANNKGNCYVW 194 (311)
T ss_pred CCcceEEeecC------CCcEEEEEccCCcccccc-CCCCCccee------------eEEEcCCCcEEEEecCCccEEEE
Confidence 22222332222 124799999999765542 332222210 02344467766665566778888
Q ss_pred eCCCCcE-EEeccCCCcccCCCcccEEEEE-eCCEEEEEcCCCCCCCCeeEEEEeecCC
Q 013929 352 DKERRLW-FTIGRLPERANSMNGWGLAFRA-CGDRLIVIGGPKASGEGFIELNSWVPSE 408 (433)
Q Consensus 352 d~~~~~W-~~v~~lp~~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~ 408 (433)
+.-+.+- +++.++..-. -+++++..+.. .+++.++.-+.+ .++++|..+.
T Consensus 195 ~l~~~~~~s~l~P~~k~~-ah~~~il~C~lSPd~k~lat~ssd------ktv~iwn~~~ 246 (311)
T KOG0315|consen 195 RLLNHQTASELEPVHKFQ-AHNGHILRCLLSPDVKYLATCSSD------KTVKIWNTDD 246 (311)
T ss_pred EccCCCccccceEhhhee-cccceEEEEEECCCCcEEEeecCC------ceEEEEecCC
Confidence 7766432 2222222211 13345554443 345555555442 3466666543
No 200
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=46.34 E-value=1.6e+02 Score=25.56 Aligned_cols=61 Identities=18% Similarity=0.157 Sum_probs=34.8
Q ss_pred CEEEEE-ecCCCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecC
Q 013929 336 NELYAA-DYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPS 407 (433)
Q Consensus 336 ~~ly~~-gg~~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~ 407 (433)
+++.++ |.....+..||.+ ...+..++.... ....-..+|+++++||..+.. ..+..|+.+
T Consensus 72 ~~favi~g~~~~~v~lyd~~---~~~i~~~~~~~~-----n~i~wsP~G~~l~~~g~~n~~---G~l~~wd~~ 133 (194)
T PF08662_consen 72 NEFAVIYGSMPAKVTLYDVK---GKKIFSFGTQPR-----NTISWSPDGRFLVLAGFGNLN---GDLEFWDVR 133 (194)
T ss_pred CEEEEEEccCCcccEEEcCc---ccEeEeecCCCc-----eEEEECCCCCEEEEEEccCCC---cEEEEEECC
Confidence 445444 4345689999986 333333433221 122334578888888875432 357778774
No 201
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=45.84 E-value=2.8e+02 Score=26.58 Aligned_cols=156 Identities=13% Similarity=0.190 Sum_probs=79.5
Q ss_pred CCceEEEeCCCCCeEEcCC--CCCCCc-ceeEEEECCE-EEEEccccCCCCcccceEEEEECCCCceEecC---CCCCCC
Q 013929 240 LSSAEMYNSETQTWKVLPS--MKNPRK-MCSGVFMDGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIP---NMSPAR 312 (433)
Q Consensus 240 ~~~~~~yd~~t~~W~~~~~--~p~~r~-~~~~~~~~g~-lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r 312 (433)
...+..|+...+.-+...+ .+..-. .|-+.--+++ .|++.-.+ ..-.++.||...++.+++. .+|..-
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~-----stV~v~~y~~~~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELN-----STVDVLEYNPAVGKFEELQTIDTLPEDF 240 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccC-----CEEEEEEEcCCCceEEEeeeeccCcccc
Confidence 5678889888766554332 211111 1222223444 68884433 3445677888888888775 355443
Q ss_pred CCCCCCCcCCCCcCCCCEEEE-E-CCEEEEEecCCCeEEEE--eCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEE
Q 013929 313 GGAARGTEMPASAEAPPLVAV-V-NNELYAADYADMEVRKY--DKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVI 388 (433)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~-~-~~~ly~~gg~~~~i~~y--d~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~ 388 (433)
.+. .+...+.+ . +..||+..-..++|.+| |+.++.-.-+...+......+. +.+. .++++++.
T Consensus 241 ~g~----------~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~--F~i~-~~g~~Lia 307 (346)
T COG2706 241 TGT----------NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRD--FNIN-PSGRFLIA 307 (346)
T ss_pred CCC----------CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcc--ceeC-CCCCEEEE
Confidence 331 00012221 2 44677765445677777 5555654444322211111111 3333 34455444
Q ss_pred cCCCCCCCCeeEEEEeecCCCCCCceEecc
Q 013929 389 GGPKASGEGFIELNSWVPSEGPPQWNLLAR 418 (433)
Q Consensus 389 GG~~~~~~~~~~~~~~~~~~~~~~W~~v~~ 418 (433)
-+.+. ..+.+|..+.++.+-+.+..
T Consensus 308 a~q~s-----d~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 308 ANQKS-----DNITVFERDKETGRLTLLGR 332 (346)
T ss_pred EccCC-----CcEEEEEEcCCCceEEeccc
Confidence 44433 23667777778887777654
No 202
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=44.82 E-value=4.1e+02 Score=28.18 Aligned_cols=107 Identities=12% Similarity=0.065 Sum_probs=56.8
Q ss_pred EEEECCEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcceeeEEE-eCCEEEEEccCCCCCCcCCceEEEeCCC
Q 013929 172 SLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSAS-LGEIAILAGGSDLEGNILSSAEMYNSET 250 (433)
Q Consensus 172 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t 250 (433)
+..+.+.-|++.|. ....+-.+|..++.=.++=.-.. +.-.+++. ..|+-.+.|+.+ ..+-+||..+
T Consensus 541 v~FHPNs~Y~aTGS-----sD~tVRlWDv~~G~~VRiF~GH~-~~V~al~~Sp~Gr~LaSg~ed------~~I~iWDl~~ 608 (707)
T KOG0263|consen 541 VSFHPNSNYVATGS-----SDRTVRLWDVSTGNSVRIFTGHK-GPVTALAFSPCGRYLASGDED------GLIKIWDLAN 608 (707)
T ss_pred EEECCcccccccCC-----CCceEEEEEcCCCcEEEEecCCC-CceEEEEEcCCCceEeecccC------CcEEEEEcCC
Confidence 34456788888885 34457888888876544321111 11222222 244444444433 3477888887
Q ss_pred CCeEEcCCCCCCCcc-eeE-EEECCEEEEEccccCCCCcccceEEEEECCC
Q 013929 251 QTWKVLPSMKNPRKM-CSG-VFMDGKFYVIGGIGGSDSKVLTCGEEYDLET 299 (433)
Q Consensus 251 ~~W~~~~~~p~~r~~-~~~-~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t 299 (433)
++ .+..+...... .+. ...+|.+.+.||.+ +++-.||...
T Consensus 609 ~~--~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D-------nsV~lWD~~~ 650 (707)
T KOG0263|consen 609 GS--LVKQLKGHTGTIYSLSFSRDGNVLASGGAD-------NSVRLWDLTK 650 (707)
T ss_pred Cc--chhhhhcccCceeEEEEecCCCEEEecCCC-------CeEEEEEchh
Confidence 53 12222222111 122 24689999999876 3456666543
No 203
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=44.67 E-value=1e+02 Score=30.58 Aligned_cols=84 Identities=10% Similarity=0.117 Sum_probs=48.1
Q ss_pred ECCEEEEEecCCCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecC------
Q 013929 334 VNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPS------ 407 (433)
Q Consensus 334 ~~~~ly~~gg~~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~------ 407 (433)
-.+.-++-.+....+..||.+|++-..--.+...... ...-.-+.+++++||.+.. +..|+..
T Consensus 268 ~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~c-----vkf~pd~~n~fl~G~sd~k------i~~wDiRs~kvvq 336 (503)
T KOG0282|consen 268 NCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTC-----VKFHPDNQNIFLVGGSDKK------IRQWDIRSGKVVQ 336 (503)
T ss_pred ccCCeeeeeecceeeeeeccccceEEEEEecCCCcee-----eecCCCCCcEEEEecCCCc------EEEEeccchHHHH
Confidence 3455566666788899999999986544322222210 1121234599999998542 4455442
Q ss_pred ---CCCCCceEecccCCCcEEEEE
Q 013929 408 ---EGPPQWNLLARKQSANFVYNC 428 (433)
Q Consensus 408 ---~~~~~W~~v~~~p~~~~~~~~ 428 (433)
.....|..+.-+|.++.+.++
T Consensus 337 eYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred HHHhhhhheeeeEEccCCceEeee
Confidence 223456666666665554443
No 204
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=43.85 E-value=2.7e+02 Score=25.86 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=77.0
Q ss_pred CCEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcceeeEEEe--C--CEEEEEccCCCCCCcCCceEEEeCCCC
Q 013929 176 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--G--EIAILAGGSDLEGNILSSAEMYNSETQ 251 (433)
Q Consensus 176 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~yd~~t~ 251 (433)
++.-.|.|.. .+.+..||...+.=-++..--. |...+++.+ + +-++|-+|.+. .+-++|+.+.
T Consensus 116 dn~qivSGSr------DkTiklwnt~g~ck~t~~~~~~-~~WVscvrfsP~~~~p~Ivs~s~Dk------tvKvWnl~~~ 182 (315)
T KOG0279|consen 116 DNRQIVSGSR------DKTIKLWNTLGVCKYTIHEDSH-REWVSCVRFSPNESNPIIVSASWDK------TVKVWNLRNC 182 (315)
T ss_pred CCceeecCCC------cceeeeeeecccEEEEEecCCC-cCcEEEEEEcCCCCCcEEEEccCCc------eEEEEccCCc
Confidence 4455555533 3446666666554333322111 333333333 2 45666666653 4667777765
Q ss_pred CeEEcCCCCCCCcc---eeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCC
Q 013929 252 TWKVLPSMKNPRKM---CSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAP 328 (433)
Q Consensus 252 ~W~~~~~~p~~r~~---~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~ 328 (433)
+= ..+-.+..+ ...+..+|.+...||.++. ++.+|+...+= +-.+.....-
T Consensus 183 ~l---~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-------~~LwdL~~~k~--lysl~a~~~v-------------- 236 (315)
T KOG0279|consen 183 QL---RTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-------AMLWDLNEGKN--LYSLEAFDIV-------------- 236 (315)
T ss_pred ch---hhccccccccEEEEEECCCCCEEecCCCCce-------EEEEEccCCce--eEeccCCCeE--------------
Confidence 32 222222222 2334569999999998753 46677765542 1112211111
Q ss_pred CEEEEECCEEEEEecCCCeEEEEeCCCCc
Q 013929 329 PLVAVVNNELYAADYADMEVRKYDKERRL 357 (433)
Q Consensus 329 ~~~~~~~~~ly~~gg~~~~i~~yd~~~~~ 357 (433)
.++++.-++..+.-+...+|.+||.+++.
T Consensus 237 ~sl~fspnrywL~~at~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 237 NSLCFSPNRYWLCAATATSIKIWDLESKA 265 (315)
T ss_pred eeEEecCCceeEeeccCCceEEEeccchh
Confidence 15677778877776667789999988875
No 205
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=43.45 E-value=2.8e+02 Score=25.91 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=44.0
Q ss_pred CCEEEEE-ccccCCCC----cccceEEEEECCCCceEecCCCCC----CCCCCCCCCcCCCCcCCCCEEEEEC-------
Q 013929 272 DGKFYVI-GGIGGSDS----KVLTCGEEYDLETETWTEIPNMSP----ARGGAARGTEMPASAEAPPLVAVVN------- 335 (433)
Q Consensus 272 ~g~lyv~-GG~~~~~~----~~~~~v~~yd~~t~~W~~~~~~p~----~r~~~~~~~~~~~~~~~~~~~~~~~------- 335 (433)
.|+|+|+ .|.-.... .....+..||+.+++=...-.+|. +.+.. ..+++..
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~l-------------ndl~VD~~~~~~~~ 77 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFL-------------NDLVVDVRDGNCDD 77 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGE-------------EEEEEECTTTTS-S
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHccccccc-------------ceEEEEccCCCCcc
Confidence 4677777 23321111 334578999999997433222221 11111 1233333
Q ss_pred CEEEEEecCCCeEEEEeCCCCc-EEEecc
Q 013929 336 NELYAADYADMEVRKYDKERRL-WFTIGR 363 (433)
Q Consensus 336 ~~ly~~gg~~~~i~~yd~~~~~-W~~v~~ 363 (433)
+.+||.......+.+||..+++ |+.+..
T Consensus 78 ~~aYItD~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 78 GFAYITDSGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp EEEEEEETTTCEEEEEETTTTEEEEEETC
T ss_pred eEEEEeCCCcCcEEEEEccCCcEEEEecC
Confidence 4789987666799999999975 666654
No 206
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=42.51 E-value=2e+02 Score=24.03 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=48.6
Q ss_pred EEECCEEEEEccccCCCCcccceEEEEECCCCce-EecCCCCCCCC-CCCCCCcCCCCcCCCCEE-EEECCEEEEEec--
Q 013929 269 VFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETW-TEIPNMSPARG-GAARGTEMPASAEAPPLV-AVVNNELYAADY-- 343 (433)
Q Consensus 269 ~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~-~~~~~~~~~~~~~~~~~~-~~~~~~ly~~gg-- 343 (433)
+.++|.+|.++...... ....|..||+.++++ ..++ +|.... .. ..... ++.+++|.++-.
T Consensus 2 V~vnG~~hW~~~~~~~~--~~~~IlsFDl~~E~F~~~~~-lP~~~~~~~-----------~~~~L~~v~~~~L~~~~~~~ 67 (164)
T PF07734_consen 2 VFVNGALHWLAYDENND--EKDFILSFDLSTEKFGRSLP-LPFCNDDDD-----------DSVSLSVVRGDCLCVLYQCD 67 (164)
T ss_pred EEECCEEEeeEEecCCC--CceEEEEEeccccccCCEEC-CCCccCccC-----------CEEEEEEecCCEEEEEEecc
Confidence 67899999998765222 111689999999999 5553 343322 11 00122 333778888742
Q ss_pred C--CCeEEEEeC---CCCcEEEecc
Q 013929 344 A--DMEVRKYDK---ERRLWFTIGR 363 (433)
Q Consensus 344 ~--~~~i~~yd~---~~~~W~~v~~ 363 (433)
. .-+||+-+. ....|+++-.
T Consensus 68 ~~~~~~IWvm~~~~~~~~SWtK~~~ 92 (164)
T PF07734_consen 68 ETSKIEIWVMKKYGYGKESWTKLFT 92 (164)
T ss_pred CCccEEEEEEeeeccCcceEEEEEE
Confidence 1 246777652 3678998753
No 207
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=41.75 E-value=2.8e+02 Score=25.34 Aligned_cols=154 Identities=15% Similarity=0.108 Sum_probs=74.9
Q ss_pred CceecCCCCCC-----CcceeeEEE-eCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEEE--CCE
Q 013929 203 NSWSSGMRMNA-----PRCLFGSAS-LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM--DGK 274 (433)
Q Consensus 203 ~~W~~~~~~p~-----~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~g~ 274 (433)
.-|+..+|+.. |-....... -.+.|+..|| -..++..|.++++.+..-.- ..-+-|+++.- ++.
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG-------D~~~y~~dlE~G~i~r~~rG-HtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG-------DGVIYQVDLEDGRIQREYRG-HTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecC-------CeEEEEEEecCCEEEEEEcC-CcceeeeeeecccCcc
Confidence 35776666533 222221111 3677888876 14588899999987643110 01122333332 233
Q ss_pred EEEEccccCCCCcccceEEEEECCCCceEec-CCC---CCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEE
Q 013929 275 FYVIGGIGGSDSKVLTCGEEYDLETETWTEI-PNM---SPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRK 350 (433)
Q Consensus 275 lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~-~~~---p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~ 350 (433)
| +.|+.+| .+-++|.+|.+=..+ .+. ..-|-.. +.| -.+...+....+.|| ...+-.
T Consensus 171 i-lsG~EDG-------tvRvWd~kt~k~v~~ie~yk~~~~lRp~~---------g~w-igala~~edWlvCGg-Gp~lsl 231 (325)
T KOG0649|consen 171 I-LSGAEDG-------TVRVWDTKTQKHVSMIEPYKNPNLLRPDW---------GKW-IGALAVNEDWLVCGG-GPKLSL 231 (325)
T ss_pred e-eecCCCc-------cEEEEeccccceeEEeccccChhhcCccc---------Cce-eEEEeccCceEEecC-CCceeE
Confidence 3 3344442 356788888765543 211 1111100 000 124444555555554 344566
Q ss_pred EeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCC
Q 013929 351 YDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGP 391 (433)
Q Consensus 351 yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~ 391 (433)
|+....+=+.+-++|.+. + .+...+..+++||.
T Consensus 232 whLrsse~t~vfpipa~v-------~-~v~F~~d~vl~~G~ 264 (325)
T KOG0649|consen 232 WHLRSSESTCVFPIPARV-------H-LVDFVDDCVLIGGE 264 (325)
T ss_pred EeccCCCceEEEecccce-------e-EeeeecceEEEecc
Confidence 666666666666666654 2 33444445555553
No 208
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=41.73 E-value=3.6e+02 Score=26.74 Aligned_cols=58 Identities=5% Similarity=0.011 Sum_probs=37.1
Q ss_pred cccceeEEEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCC
Q 013929 189 HHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQ 251 (433)
Q Consensus 189 ~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 251 (433)
....|+++++|-..+.--++..+...-.-.++-..++..|++-=. ...-+.+.|+..-
T Consensus 402 de~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfr-----qtDPlfviDlsNP 459 (603)
T COG4880 402 DEPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFR-----QTDPLFVIDLSNP 459 (603)
T ss_pred CCccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEEe-----ccCceEEEEcCCC
Confidence 456788999998887766666654333335566678888877422 2344666776653
No 209
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=41.66 E-value=2.7e+02 Score=25.27 Aligned_cols=185 Identities=15% Similarity=0.165 Sum_probs=89.8
Q ss_pred CCEEEEEc--cCCCCCCcCCc-eEEEeCC-CCCeEEcCCCCCC------Cccee--EEEECCEEEEEccccCCCCcccce
Q 013929 224 GEIAILAG--GSDLEGNILSS-AEMYNSE-TQTWKVLPSMKNP------RKMCS--GVFMDGKFYVIGGIGGSDSKVLTC 291 (433)
Q Consensus 224 ~~~iyv~G--G~~~~~~~~~~-~~~yd~~-t~~W~~~~~~p~~------r~~~~--~~~~~g~lyv~GG~~~~~~~~~~~ 291 (433)
+++|+++- +.......... .+..... -.+|+....++.. ..... ...-+|++++. .+.. .......
T Consensus 58 ~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~-~~~~-~~~~~~~ 135 (275)
T PF13088_consen 58 DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAP-YYHE-SGGSFSA 135 (275)
T ss_dssp TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEE-EEEE-SSCEEEE
T ss_pred CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEE-Eeec-cccCcce
Confidence 88988885 22211111111 1244444 3579876543211 11122 34458888887 2221 1112333
Q ss_pred EEEEECC-CCceEecCCCCCC-CCCCCCCCcCCCCcCCCCEEEE-ECCEEEEEecC--CCeEEE-EeCC-CCcEEEec--
Q 013929 292 GEEYDLE-TETWTEIPNMSPA-RGGAARGTEMPASAEAPPLVAV-VNNELYAADYA--DMEVRK-YDKE-RRLWFTIG-- 362 (433)
Q Consensus 292 v~~yd~~-t~~W~~~~~~p~~-r~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~--~~~i~~-yd~~-~~~W~~v~-- 362 (433)
...|... -.+|+.....+.. .... ++++. -+|+|+++--. ...++. +-.. ..+|....
T Consensus 136 ~~~~S~D~G~tW~~~~~~~~~~~~~e-------------~~~~~~~dG~l~~~~R~~~~~~~~~~~S~D~G~TWs~~~~~ 202 (275)
T PF13088_consen 136 FVYYSDDGGKTWSSGSPIPDGQGECE-------------PSIVELPDGRLLAVFRTEGNDDIYISRSTDGGRTWSPPQPT 202 (275)
T ss_dssp EEEEESSTTSSEEEEEECECSEEEEE-------------EEEEEETTSEEEEEEEECSSTEEEEEEESSTTSS-EEEEEE
T ss_pred EEEEeCCCCceeeccccccccCCcce-------------eEEEECCCCcEEEEEEccCCCcEEEEEECCCCCcCCCceec
Confidence 4445444 4569887655321 2111 13333 36788887532 123333 3333 34799865
Q ss_pred cCCCcccCCCcccEEEEE-eCCEEEEEcCCCCCCCCeeEEEEeecCCCCCCceEecccCCC---cEEEEEEEe
Q 013929 363 RLPERANSMNGWGLAFRA-CGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSA---NFVYNCAVM 431 (433)
Q Consensus 363 ~lp~~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~W~~v~~~p~~---~~~~~~~v~ 431 (433)
.+|.... +..+.. -+++++++..... ....+.++.-.....+|+....+..+ .+.|++.+.
T Consensus 203 ~~~~~~~-----~~~~~~~~~g~~~~~~~~~~---~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~ 267 (275)
T PF13088_consen 203 NLPNPNS-----SISLVRLSDGRLLLVYNNPD---GRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQ 267 (275)
T ss_dssp ECSSCCE-----EEEEEECTTSEEEEEEECSS---TSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEE
T ss_pred ccCcccC-----CceEEEcCCCCEEEEEECCC---CCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEE
Confidence 4444432 133333 4678888876211 23445554444457899877666543 377776653
No 210
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=41.32 E-value=3e+02 Score=25.58 Aligned_cols=14 Identities=29% Similarity=0.636 Sum_probs=10.5
Q ss_pred CCEEEEEcCCCCCC
Q 013929 382 GDRLIVIGGPKASG 395 (433)
Q Consensus 382 ~~~l~v~GG~~~~~ 395 (433)
+-+|+++||.....
T Consensus 158 ~h~LLlVgG~~~~~ 171 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQ 171 (282)
T ss_pred CCCEEEEeccCCCC
Confidence 34899999986654
No 211
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=40.60 E-value=1.9e+02 Score=23.59 Aligned_cols=28 Identities=14% Similarity=0.135 Sum_probs=18.1
Q ss_pred eccccCccccEEEEeeccceEEEEecCCC
Q 013929 123 LRRLNGVIEHWVYFSCHLLEWEAFDPIRR 151 (433)
Q Consensus 123 ~gg~~~~~~~~l~~~~~~~~~~~yd~~~~ 151 (433)
+|.+++.. +.|-..+....+..++|...
T Consensus 3 iGkfDG~~-pcL~~aT~~gKV~IH~ph~~ 30 (136)
T PF14781_consen 3 IGKFDGVH-PCLACATTGGKVFIHNPHER 30 (136)
T ss_pred EEEeCCCc-eeEEEEecCCEEEEECCCcc
Confidence 45555554 35555566778888888754
No 212
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=40.35 E-value=4.4e+02 Score=27.26 Aligned_cols=163 Identities=14% Similarity=0.163 Sum_probs=85.9
Q ss_pred cceeEEEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEEE
Q 013929 191 ISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF 270 (433)
Q Consensus 191 ~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~ 270 (433)
..+.+.+||..++.-..+-.- .-....++.+++.+.|.|.+++ .+-+||+.+.+- +..+...-..-....
T Consensus 309 ~D~tVkVW~v~n~~~l~l~~~--h~~~V~~v~~~~~~lvsgs~d~------~v~VW~~~~~~c--l~sl~gH~~~V~sl~ 378 (537)
T KOG0274|consen 309 RDNTVKVWDVTNGACLNLLRG--HTGPVNCVQLDEPLLVSGSYDG------TVKVWDPRTGKC--LKSLSGHTGRVYSLI 378 (537)
T ss_pred CCceEEEEeccCcceEEEecc--ccccEEEEEecCCEEEEEecCc------eEEEEEhhhcee--eeeecCCcceEEEEE
Confidence 445688888876554322110 1111234455677777776543 477888885432 222222111112235
Q ss_pred ECC-EEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEE
Q 013929 271 MDG-KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVR 349 (433)
Q Consensus 271 ~~g-~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~ 349 (433)
+++ ..++-|+.+ ..|.++|+.+.. ..+..+...... .......+++++-+...+.|.
T Consensus 379 ~~~~~~~~Sgs~D-------~~IkvWdl~~~~-~c~~tl~~h~~~--------------v~~l~~~~~~Lvs~~aD~~Ik 436 (537)
T KOG0274|consen 379 VDSENRLLSGSLD-------TTIKVWDLRTKR-KCIHTLQGHTSL--------------VSSLLLRDNFLVSSSADGTIK 436 (537)
T ss_pred ecCcceEEeeeec-------cceEeecCCchh-hhhhhhcCCccc--------------ccccccccceeEeccccccEE
Confidence 566 566666655 357888888775 222222211111 023345567777777888999
Q ss_pred EEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCC
Q 013929 350 KYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGP 391 (433)
Q Consensus 350 ~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~ 391 (433)
.||.++++=.++-.-+ .. .+..+...+...++..+.
T Consensus 437 ~WD~~~~~~~~~~~~~-~~-----~~v~~l~~~~~~il~s~~ 472 (537)
T KOG0274|consen 437 LWDAEEGECLRTLEGR-HV-----GGVSALALGKEEILCSSD 472 (537)
T ss_pred EeecccCceeeeeccC-Cc-----ccEEEeecCcceEEEEec
Confidence 9999888765553332 11 123333444466666655
No 213
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=40.11 E-value=2.9e+02 Score=25.17 Aligned_cols=89 Identities=19% Similarity=0.145 Sum_probs=49.9
Q ss_pred CCCeEEcCCCCC-----CCcceeEE-EECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCC
Q 013929 250 TQTWKVLPSMKN-----PRKMCSGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPA 323 (433)
Q Consensus 250 t~~W~~~~~~p~-----~r~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~ 323 (433)
+..|+..+++.. |-.+.-.+ ...+.|+..||.. .++..|+++++.++.-.-. .-+-|
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~--------~~y~~dlE~G~i~r~~rGH-tDYvH-------- 160 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG--------VIYQVDLEDGRIQREYRGH-TDYVH-------- 160 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe--------EEEEEEecCCEEEEEEcCC-cceee--------
Confidence 345776665533 22232222 2467788888754 4688999999887652100 01111
Q ss_pred CcCCCCEEEEEC-CEEEEEecCCCeEEEEeCCCCcEEEe
Q 013929 324 SAEAPPLVAVVN-NELYAADYADMEVRKYDKERRLWFTI 361 (433)
Q Consensus 324 ~~~~~~~~~~~~-~~ly~~gg~~~~i~~yd~~~~~W~~v 361 (433)
+++.-+ +--.+-|+.++.+.+||.+|.+=.++
T Consensus 161 ------~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 161 ------SVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM 193 (325)
T ss_pred ------eeeecccCcceeecCCCccEEEEeccccceeEE
Confidence 222211 22234567788999999998865443
No 214
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=39.51 E-value=3.7e+02 Score=26.21 Aligned_cols=148 Identities=16% Similarity=0.097 Sum_probs=82.6
Q ss_pred ECCEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCCCcceeeEE--EeCCEEEEEccCCCCCCcCCceEEEeCCCCC
Q 013929 175 VGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSA--SLGEIAILAGGSDLEGNILSSAEMYNSETQT 252 (433)
Q Consensus 175 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 252 (433)
.+.++|+..+. .+.+.++|..+++-... .+..+..+..+ ..++++||..... ..+.+.++|..+++
T Consensus 84 ~~~~vyv~~~~------~~~v~vid~~~~~~~~~--~~vG~~P~~~~~~~~~~~vYV~n~~~----~~~~vsvid~~t~~ 151 (381)
T COG3391 84 AGNKVYVTTGD------SNTVSVIDTATNTVLGS--IPVGLGPVGLAVDPDGKYVYVANAGN----GNNTVSVIDAATNK 151 (381)
T ss_pred CCCeEEEecCC------CCeEEEEcCcccceeeE--eeeccCCceEEECCCCCEEEEEeccc----CCceEEEEeCCCCe
Confidence 46789999754 56789999666653322 12222223333 3367999985322 24678999999886
Q ss_pred eEEcCCCCCCCcceeEE--EECCEEEEEccccCCCCcccceEEEEECCCCceEecCC----CCCCCCCCCCCCcCCCCcC
Q 013929 253 WKVLPSMKNPRKMCSGV--FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPN----MSPARGGAARGTEMPASAE 326 (433)
Q Consensus 253 W~~~~~~p~~r~~~~~~--~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~----~p~~r~~~~~~~~~~~~~~ 326 (433)
=... .+........+ ..+.++|+.- ...+.+..+|+.+..-.+ +. .+....-
T Consensus 152 ~~~~--~~vG~~P~~~a~~p~g~~vyv~~-------~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P------------ 209 (381)
T COG3391 152 VTAT--IPVGNTPTGVAVDPDGNKVYVTN-------SDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGP------------ 209 (381)
T ss_pred EEEE--EecCCCcceEEECCCCCeEEEEe-------cCCCeEEEEeCCCcceec-cccccccccCCCC------------
Confidence 4332 12111112222 3455688883 234567888887765332 21 1111111
Q ss_pred CCCEEEE--ECCEEEEEecCC--CeEEEEeCCCCcE
Q 013929 327 APPLVAV--VNNELYAADYAD--MEVRKYDKERRLW 358 (433)
Q Consensus 327 ~~~~~~~--~~~~ly~~gg~~--~~i~~yd~~~~~W 358 (433)
...++ .+.++|+.-... +.+...|..++.=
T Consensus 210 --~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 210 --AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred --ceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 12222 355688886555 5888888888653
No 215
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=39.46 E-value=3.4e+02 Score=25.73 Aligned_cols=107 Identities=13% Similarity=0.222 Sum_probs=61.5
Q ss_pred CCceEEEeCCCCCeEEc--------CCCCCCCcceeEEEECCEEEEEcccc------CCCCcccceEEEEECCCCceEec
Q 013929 240 LSSAEMYNSETQTWKVL--------PSMKNPRKMCSGVFMDGKFYVIGGIG------GSDSKVLTCGEEYDLETETWTEI 305 (433)
Q Consensus 240 ~~~~~~yd~~t~~W~~~--------~~~p~~r~~~~~~~~~g~lyv~GG~~------~~~~~~~~~v~~yd~~t~~W~~~ 305 (433)
-..+.+||.. |+.+ +.+|..-.-+....++++|||.=-.. .....-+.-|.+||+.-+--+++
T Consensus 161 ~g~IDVFd~~---f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~ 237 (336)
T TIGR03118 161 QGRIDVFKGS---FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRV 237 (336)
T ss_pred CCceEEecCc---cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEe
Confidence 4567788654 3332 23455555667889999999984322 11123344578899987766666
Q ss_pred CC---CCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCCcEE
Q 013929 306 PN---MSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWF 359 (433)
Q Consensus 306 ~~---~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~~W~ 359 (433)
.+ +..+..-. ..+...-...|.|.|=..-++.|-.||+.+++|.
T Consensus 238 as~g~LNaPWG~a----------~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 238 ASSGRLNAPWGLA----------IAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred ccCCcccCCceee----------eChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 42 33332221 0011122345666653323688999999999885
No 216
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=38.56 E-value=2.7e+02 Score=24.26 Aligned_cols=82 Identities=17% Similarity=0.136 Sum_probs=44.8
Q ss_pred CCCCCCcCCceEEEeCCCCCeEEcCCCCCC-Ccce-eEEEE-CCEEEEEccccCCCCcccceEEEEECCCCceEecCCCC
Q 013929 233 SDLEGNILSSAEMYNSETQTWKVLPSMKNP-RKMC-SGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMS 309 (433)
Q Consensus 233 ~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-r~~~-~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p 309 (433)
.+........+|++|..++.|..+.--+.. .... -+..+ +..|.++-|+.-.....-..++.|++.++.=+.+-+..
T Consensus 80 ~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~ 159 (200)
T PF15525_consen 80 PEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWK 159 (200)
T ss_pred CccccccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeecc
Confidence 333334577899999998888654211111 1111 23333 44444443332112223345899999999988887665
Q ss_pred CCCCC
Q 013929 310 PARGG 314 (433)
Q Consensus 310 ~~r~~ 314 (433)
.....
T Consensus 160 dkkqQ 164 (200)
T PF15525_consen 160 DKKQQ 164 (200)
T ss_pred cccee
Confidence 54333
No 217
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=38.19 E-value=76 Score=18.01 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=18.3
Q ss_pred EEECCEEEEEecCCCeEEEEeCCCCc--EE
Q 013929 332 AVVNNELYAADYADMEVRKYDKERRL--WF 359 (433)
Q Consensus 332 ~~~~~~ly~~gg~~~~i~~yd~~~~~--W~ 359 (433)
...++.+|+. ...+.++.+|.++++ |+
T Consensus 3 ~~~~~~v~~~-~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 3 VLSDGTVYVG-STDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEECCEEEEE-cCCCEEEEEEcccCcEEEE
Confidence 3455666654 457889999988764 64
No 218
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=37.84 E-value=3.8e+02 Score=25.89 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=40.4
Q ss_pred CEEEEEecCCCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecCCCCCCceE
Q 013929 336 NELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNL 415 (433)
Q Consensus 336 ~~ly~~gg~~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~W~~ 415 (433)
|+-++.|+...+|.+|....+.=+.+-. ..|.. .-+++...-+.=||+.|.++.+ +..|.- +.|+.
T Consensus 284 G~EfvsgsyDksIRIf~~~~~~SRdiYh--tkRMq---~V~~Vk~S~Dskyi~SGSdd~n-----vRlWka----~Asek 349 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVNHGHSRDIYH--TKRMQ---HVFCVKYSMDSKYIISGSDDGN-----VRLWKA----KASEK 349 (433)
T ss_pred cchhccccccceEEEeecCCCcchhhhh--Hhhhh---eeeEEEEeccccEEEecCCCcc-----eeeeec----chhhh
Confidence 6777888888888888776655444421 11111 0123333456678888876654 556654 45666
Q ss_pred eccc
Q 013929 416 LARK 419 (433)
Q Consensus 416 v~~~ 419 (433)
++++
T Consensus 350 lgv~ 353 (433)
T KOG0268|consen 350 LGVI 353 (433)
T ss_pred cCCC
Confidence 6554
No 219
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=37.28 E-value=3.4e+02 Score=25.04 Aligned_cols=205 Identities=14% Similarity=0.233 Sum_probs=95.5
Q ss_pred EEEECCEEEE--ECCCCCCcccceeEEEEEcCC-CceecC---CC----CCCC-cceeeEEEeCCEEEEEccC-CCCCCc
Q 013929 172 SLAVGTELLV--FGRELTAHHISHVIYRYSILT-NSWSSG---MR----MNAP-RCLFGSASLGEIAILAGGS-DLEGNI 239 (433)
Q Consensus 172 ~~~~~~~iyv--~GG~~~~~~~~~~~~~yd~~t-~~W~~~---~~----~p~~-r~~~~~~~~~~~iyv~GG~-~~~~~~ 239 (433)
..+.++.||. ++|.-.+-....-.|+=.-.. ++|+.. .+ -|.- -...++.++++++|.+=-. +-....
T Consensus 21 aFVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~k 100 (367)
T PF12217_consen 21 AFVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNK 100 (367)
T ss_dssp -EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--
T ss_pred ceeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhhhhh
Confidence 3667888873 344333333444556655544 367532 22 2221 2334677889999987432 111122
Q ss_pred CCceEEEe---CCCCCeEE--cCCCCC-------CCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecC-
Q 013929 240 LSSAEMYN---SETQTWKV--LPSMKN-------PRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIP- 306 (433)
Q Consensus 240 ~~~~~~yd---~~t~~W~~--~~~~p~-------~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~- 306 (433)
+...+.|| ...+.|+. ++..|. ...-|+.+.+++.-|.+|=.+|+.....-.+..| ++.|....
T Consensus 101 m~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yf---s~~~~sp~~ 177 (367)
T PF12217_consen 101 MVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYF---SDAFASPGV 177 (367)
T ss_dssp EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEE---TTTTT-TT-
T ss_pred hhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEe---cccccCCcc
Confidence 34445555 34667864 444443 2345788888988888886665443222223333 22232211
Q ss_pred ----CCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEe-c-----CCCeEEEEeCCCCcEEEeccCCCcccCCCcccE
Q 013929 307 ----NMSPARGGAARGTEMPASAEAPPLVAVVNNELYAAD-Y-----ADMEVRKYDKERRLWFTIGRLPERANSMNGWGL 376 (433)
Q Consensus 307 ----~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~g-g-----~~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~ 376 (433)
.++..-... ..-+.+-.++|.||+.. | ....+.+-+.....|..+. +|.... .-..
T Consensus 178 ~vrr~i~sey~~~----------AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr-fp~nvH---htnl 243 (367)
T PF12217_consen 178 FVRRIIPSEYERN----------ASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR-FPNNVH---HTNL 243 (367)
T ss_dssp -EEEE--GGG-TT----------EEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE--TT------SS--
T ss_pred eeeeechhhhccc----------cccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc-cccccc---ccCC
Confidence 011111110 01134567899999984 2 1246777787888898875 232221 1125
Q ss_pred EEEEeCCEEEEEcCCCC
Q 013929 377 AFRACGDRLIVIGGPKA 393 (433)
Q Consensus 377 ~~~~~~~~l~v~GG~~~ 393 (433)
.++..++.||+||-...
T Consensus 244 PFakvgD~l~mFgsERA 260 (367)
T PF12217_consen 244 PFAKVGDVLYMFGSERA 260 (367)
T ss_dssp -EEEETTEEEEEEE-SS
T ss_pred CceeeCCEEEEEecccc
Confidence 67789999999996543
No 220
>PF13013 F-box-like_2: F-box-like domain
Probab=37.24 E-value=34 Score=26.83 Aligned_cols=29 Identities=3% Similarity=-0.037 Sum_probs=24.4
Q ss_pred CCCCchhHHHhhccccCcccchhhhhhcH
Q 013929 81 IQPIGRDNSISCLIRCSRSDYGSIASLNQ 109 (433)
Q Consensus 81 ~~~LP~dl~~~iL~rlP~~~~~~~~~V~k 109 (433)
+..||+||+..|+-.-....+..+...|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 77899999999999888888877776666
No 221
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=36.76 E-value=3.3e+02 Score=24.81 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=88.6
Q ss_pred CCEEEEECCCCCCcccceeEEEEEcC----CCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCC
Q 013929 176 GTELLVFGRELTAHHISHVIYRYSIL----TNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQ 251 (433)
Q Consensus 176 ~~~iyv~GG~~~~~~~~~~~~~yd~~----t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 251 (433)
++++|++.+. ....++.|... .+.|.+.-.+|.+-.+..-++++|.+|.-.+ ....+..||..+.
T Consensus 30 ~~r~~~~~~~-----~~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVynGs~yynk~------~t~~ivky~l~~~ 98 (249)
T KOG3545|consen 30 DDRIYVMNYF-----DGLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVYNGSLYYNKA------GTRNIIKYDLETR 98 (249)
T ss_pred cCceEEeccc-----cCceEEEeccHHHhhccCcceEEeCCCCccccceEEEcceEEeecc------CCcceEEEEeecc
Confidence 5678888443 33345656553 3456666667888888888999999888742 3567889999884
Q ss_pred C---eEEcCCCCCC---------CcceeEEEECCEEEEEccccCCCCcccceEEEEECCC----CceEecCCCCCCCCCC
Q 013929 252 T---WKVLPSMKNP---------RKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLET----ETWTEIPNMSPARGGA 315 (433)
Q Consensus 252 ~---W~~~~~~p~~---------r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t----~~W~~~~~~p~~r~~~ 315 (433)
. |..++.+... ....-.++-..-++++=-..++. ....+-..|+.+ .+|.. ..+....+
T Consensus 99 ~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~--g~iv~skLdp~tl~~e~tW~T--~~~k~~~~- 173 (249)
T KOG3545|consen 99 TVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENA--GTIVLSKLDPETLEVERTWNT--TLPKRSAG- 173 (249)
T ss_pred eeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccC--CcEEeeccCHHHhheeeeecc--ccCCCCcC-
Confidence 3 6666543211 11123444444455552222111 112234455533 45643 23333333
Q ss_pred CCCCcCCCCcCCCCEEEEECCEEEEEecCC---CeE-EEEeCCCCcEEEe
Q 013929 316 ARGTEMPASAEAPPLVAVVNNELYAADYAD---MEV-RKYDKERRLWFTI 361 (433)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~---~~i-~~yd~~~~~W~~v 361 (433)
.+.++=|.||++-... ..| +.||..+++=..+
T Consensus 174 --------------~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~ 209 (249)
T KOG3545|consen 174 --------------NAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERI 209 (249)
T ss_pred --------------ceEEEeeeeEEEeccccCCceEEEEEEcCCCceecc
Confidence 3667778899986422 234 6899998876443
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=36.48 E-value=2.4e+02 Score=27.53 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=47.8
Q ss_pred CCceEEEeCCCCCe-EEcCCCCCCCcceeEEEE--C-CEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCC
Q 013929 240 LSSAEMYNSETQTW-KVLPSMKNPRKMCSGVFM--D-GKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGA 315 (433)
Q Consensus 240 ~~~~~~yd~~t~~W-~~~~~~p~~r~~~~~~~~--~-g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~ 315 (433)
...+.+.|..+.+= ..++. ....|....+ + ..+|+.+ .+ ..+-++|+.+.+ .+...+.+....
T Consensus 15 ~~~v~viD~~t~~~~~~i~~---~~~~h~~~~~s~Dgr~~yv~~-rd-------g~vsviD~~~~~--~v~~i~~G~~~~ 81 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPT---GGAPHAGLKFSPDGRYLYVAN-RD-------GTVSVIDLATGK--VVATIKVGGNPR 81 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE----STTEEEEEE-TT-SSEEEEEE-TT-------SEEEEEETTSSS--EEEEEE-SSEEE
T ss_pred CCEEEEEECCCCeEEEEEcC---CCCceeEEEecCCCCEEEEEc-CC-------CeEEEEECCccc--EEEEEecCCCcc
Confidence 46788888888652 33322 2222443332 3 4578874 23 247889999887 333332222221
Q ss_pred CCCCcCCCCcCCCCEEE-EECC-EEEEEecCCCeEEEEeCCCCc
Q 013929 316 ARGTEMPASAEAPPLVA-VVNN-ELYAADYADMEVRKYDKERRL 357 (433)
Q Consensus 316 ~~~~~~~~~~~~~~~~~-~~~~-~ly~~gg~~~~i~~yd~~~~~ 357 (433)
+++ ..+| .+|+.....+.+.++|.++.+
T Consensus 82 --------------~i~~s~DG~~~~v~n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 82 --------------GIAVSPDGKYVYVANYEPGTVSVIDAETLE 111 (369)
T ss_dssp --------------EEEE--TTTEEEEEEEETTEEEEEETTT--
T ss_pred --------------eEEEcCCCCEEEEEecCCCceeEecccccc
Confidence 232 3355 455555678899999988765
No 223
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=36.13 E-value=4.3e+02 Score=25.93 Aligned_cols=258 Identities=12% Similarity=-0.028 Sum_probs=0.0
Q ss_pred CcceeeeccccCccccEEEEeeccceEEEEecCCCcEEeCCCCCCccccccCCceEEEECCEE-EEECCCCCCcccceeE
Q 013929 117 SGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTEL-LVFGRELTAHHISHVI 195 (433)
Q Consensus 117 ~~~~~~~gg~~~~~~~~l~~~~~~~~~~~yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~i-yv~GG~~~~~~~~~~~ 195 (433)
+.++...+...+.. .++..|..+.+=.+|...+....+... +..-+..+ |+-.+. .+
T Consensus 47 G~kllF~s~~dg~~-----------nly~lDL~t~~i~QLTdg~g~~~~g~~---~s~~~~~~~Yv~~~~--------~l 104 (386)
T PF14583_consen 47 GRKLLFASDFDGNR-----------NLYLLDLATGEITQLTDGPGDNTFGGF---LSPDDRALYYVKNGR--------SL 104 (386)
T ss_dssp S-EEEEEE-TTSS------------EEEEEETTT-EEEE---SS-B-TTT-E---E-TTSSEEEEEETTT--------EE
T ss_pred CCEEEEEeccCCCc-----------ceEEEEcccCEEEECccCCCCCccceE---EecCCCeEEEEECCC--------eE
Q ss_pred EEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCC------------------cCCceEEEeCCCCCeEEcC
Q 013929 196 YRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGN------------------ILSSAEMYNSETQTWKVLP 257 (433)
Q Consensus 196 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~------------------~~~~~~~yd~~t~~W~~~~ 257 (433)
+..|..|.+=+.+-..|..-.+....+.+..=-.+.|...... ..+.+...|+.++..+.+-
T Consensus 105 ~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~ 184 (386)
T PF14583_consen 105 RRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF 184 (386)
T ss_dssp EEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE
T ss_pred EEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE
Q ss_pred CCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecC-CCCCCCCCCCCCCcCCCCcCCCCEEEEECC
Q 013929 258 SMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIP-NMSPARGGAARGTEMPASAEAPPLVAVVNN 336 (433)
Q Consensus 258 ~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~ 336 (433)
.-..-..+......+..+.++.-.. .....-..||.-|........+. .++....+| -..+.+|
T Consensus 185 ~~~~wlgH~~fsP~dp~li~fCHEG-pw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gH--------------Efw~~DG 249 (386)
T PF14583_consen 185 EDTDWLGHVQFSPTDPTLIMFCHEG-PWDLVDQRIWTINTDGSNVKKVHRRMEGESVGH--------------EFWVPDG 249 (386)
T ss_dssp EESS-EEEEEEETTEEEEEEEEE-S--TTTSS-SEEEEETTS---EESS---TTEEEEE--------------EEE-TTS
T ss_pred ecCccccCcccCCCCCCEEEEeccC-CcceeceEEEEEEcCCCcceeeecCCCCccccc--------------ccccCCC
Q ss_pred EEEEE-----ecCCCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCC--------eeEEEE
Q 013929 337 ELYAA-----DYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEG--------FIELNS 403 (433)
Q Consensus 337 ~ly~~-----gg~~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~--------~~~~~~ 403 (433)
..+.+ |+...-|..||+++..=+.+..+|... +-....+++|++-=|.+..... .....+
T Consensus 250 ~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~-------H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i 322 (386)
T PF14583_consen 250 STIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCS-------HFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWI 322 (386)
T ss_dssp S-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEE-------EEEE-TTSSEEEEEE-------------------EE
T ss_pred CEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCcee-------eeEEcCCCCEEEecCCCCCccccccccceecCCcEE
Q ss_pred eecCCCCCCceEecc
Q 013929 404 WVPSEGPPQWNLLAR 418 (433)
Q Consensus 404 ~~~~~~~~~W~~v~~ 418 (433)
|.++.+...-..++.
T Consensus 323 ~~~~~~~~~~~~l~~ 337 (386)
T PF14583_consen 323 YLFDVEAGRFRKLAR 337 (386)
T ss_dssp EEEETTTTEEEEEEE
T ss_pred EEeccccCceeeeee
No 224
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=36.12 E-value=3.7e+02 Score=25.25 Aligned_cols=94 Identities=21% Similarity=0.296 Sum_probs=50.2
Q ss_pred CCEEEEEccCCCCCCcCCceEE-EeCCCCCeEEcCCCCCCCcceeEEEE------CCEEEEEccccCCCCcccceEEEEE
Q 013929 224 GEIAILAGGSDLEGNILSSAEM-YNSETQTWKVLPSMKNPRKMCSGVFM------DGKFYVIGGIGGSDSKVLTCGEEYD 296 (433)
Q Consensus 224 ~~~iyv~GG~~~~~~~~~~~~~-yd~~t~~W~~~~~~p~~r~~~~~~~~------~g~lyv~GG~~~~~~~~~~~v~~yd 296 (433)
+|..++-||++.. --+|. |.-..|.|..- +|+.|+. ++...+..|.+ +.+..||
T Consensus 58 ~gs~~aSgG~Dr~----I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gtD-------k~v~~wD 118 (338)
T KOG0265|consen 58 DGSCFASGGSDRA----IVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGTD-------KTVRGWD 118 (338)
T ss_pred CCCeEeecCCcce----EEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecCC-------ceEEEEe
Confidence 5566777776632 11222 55566667532 4544443 34444443433 4578899
Q ss_pred CCCCceEecC--------CCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc
Q 013929 297 LETETWTEIP--------NMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRL 357 (433)
Q Consensus 297 ~~t~~W~~~~--------~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~~ 357 (433)
.++++=..-- .+++.|. +-.+..-|...+.+..||..++.
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rr---------------------g~~lv~SgsdD~t~kl~D~R~k~ 166 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRR---------------------GPQLVCSGSDDGTLKLWDIRKKE 166 (338)
T ss_pred cccceeeehhccccceeeecCcccc---------------------CCeEEEecCCCceEEEEeecccc
Confidence 9988643311 1121122 22444455567788999987654
No 225
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=35.55 E-value=3.5e+02 Score=24.78 Aligned_cols=107 Identities=14% Similarity=0.185 Sum_probs=56.1
Q ss_pred CCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEE--EECCEEEEEccccCCCCcccceEEEEECCCCc
Q 013929 224 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV--FMDGKFYVIGGIGGSDSKVLTCGEEYDLETET 301 (433)
Q Consensus 224 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~--~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~ 301 (433)
+++..+.+|. ..+-.||..++.=..+...-.++..-+++ -.+|+....||.+| .+-++|+..-.
T Consensus 51 dk~~LAaa~~-------qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg-------t~kIWdlR~~~ 116 (311)
T KOG0315|consen 51 DKKDLAAAGN-------QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG-------TVKIWDLRSLS 116 (311)
T ss_pred CcchhhhccC-------CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc-------eEEEEeccCcc
Confidence 4445555543 45788999887421111111222333343 35788888888764 34667776522
Q ss_pred eEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECC-EEEEEecCCCeEEEEeCCCCcEEE
Q 013929 302 WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNN-ELYAADYADMEVRKYDKERRLWFT 360 (433)
Q Consensus 302 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~-~ly~~gg~~~~i~~yd~~~~~W~~ 360 (433)
-.+.-..+.+. ..++..-+ .-.+.|-.++.|+++|..++.-..
T Consensus 117 ~qR~~~~~spV----------------n~vvlhpnQteLis~dqsg~irvWDl~~~~c~~ 160 (311)
T KOG0315|consen 117 CQRNYQHNSPV----------------NTVVLHPNQTELISGDQSGNIRVWDLGENSCTH 160 (311)
T ss_pred cchhccCCCCc----------------ceEEecCCcceEEeecCCCcEEEEEccCCcccc
Confidence 22111111111 12444333 334445567899999999986543
No 226
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=34.91 E-value=1e+02 Score=18.60 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=15.9
Q ss_pred EEEEEecCCCeEEEEeCCCCc--EEEe
Q 013929 337 ELYAADYADMEVRKYDKERRL--WFTI 361 (433)
Q Consensus 337 ~ly~~gg~~~~i~~yd~~~~~--W~~v 361 (433)
.||+- ...+.++.+|.++++ |+.-
T Consensus 2 ~v~~~-~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVG-TPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEE-TTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEe-CCCCEEEEEECCCCCEEEeee
Confidence 44544 566788888888774 7654
No 227
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=34.60 E-value=3.1e+02 Score=26.67 Aligned_cols=105 Identities=8% Similarity=-0.072 Sum_probs=49.9
Q ss_pred ccEEEEeeccceEEEEecCCCcEE-eCCCCCCccccccCCceEEEECCEEEEECCCCCCcccceeEEEEEcCCCce-ecC
Q 013929 131 EHWVYFSCHLLEWEAFDPIRRRWM-HLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSW-SSG 208 (433)
Q Consensus 131 ~~~l~~~~~~~~~~~yd~~~~~W~-~l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~ 208 (433)
..++|+......+..+|+.+.+=. ++..-..++ ...+..+|+..+.+.+ ..+.+.++|..|.+= +.+
T Consensus 48 gr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~------~i~~s~DG~~~~v~n~-----~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 48 GRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR------GIAVSPDGKYVYVANY-----EPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE------EEEE--TTTEEEEEEE-----ETTEEEEEETTT--EEEEE
T ss_pred CCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc------eEEEcCCCCEEEEEec-----CCCceeEeccccccceeec
Confidence 457788776678889999887632 221111111 1122235544444433 345789999888754 233
Q ss_pred CC--C----CCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCC
Q 013929 209 MR--M----NAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQ 251 (433)
Q Consensus 209 ~~--~----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 251 (433)
+. + +.+|...-.++.....||+--. -...+++.|....
T Consensus 117 ~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk-----d~~~I~vVdy~d~ 160 (369)
T PF02239_consen 117 PTGGMPVDGPESRVAAIVASPGRPEFVVNLK-----DTGEIWVVDYSDP 160 (369)
T ss_dssp E--EE-TTTS---EEEEEE-SSSSEEEEEET-----TTTEEEEEETTTS
T ss_pred ccccccccccCCCceeEEecCCCCEEEEEEc-----cCCeEEEEEeccc
Confidence 21 2 2334333333345554555322 1356777776554
No 228
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=33.34 E-value=4.2e+02 Score=24.96 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=11.7
Q ss_pred ceeEEEEEcCCCceec
Q 013929 192 SHVIYRYSILTNSWSS 207 (433)
Q Consensus 192 ~~~~~~yd~~t~~W~~ 207 (433)
.+.+.+||..+++-.+
T Consensus 35 dDsl~LYd~~~g~~~~ 50 (311)
T KOG1446|consen 35 DDSLRLYDSLSGKQVK 50 (311)
T ss_pred CCeEEEEEcCCCceee
Confidence 4468899998887543
No 229
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=33.15 E-value=4.1e+02 Score=24.80 Aligned_cols=205 Identities=14% Similarity=0.155 Sum_probs=94.6
Q ss_pred CCEEEEEC-CCC-CCc----ccceeEEEEEcCCCceec---CCC-CCCCcceeeEEEe-C-------CEEEEEccCCCCC
Q 013929 176 GTELLVFG-REL-TAH----HISHVIYRYSILTNSWSS---GMR-MNAPRCLFGSASL-G-------EIAILAGGSDLEG 237 (433)
Q Consensus 176 ~~~iyv~G-G~~-~~~----~~~~~~~~yd~~t~~W~~---~~~-~p~~r~~~~~~~~-~-------~~iyv~GG~~~~~ 237 (433)
.++|+|+- |.. ... .....+..||..|++-.+ +++ ...+.+...-.++ . +.+|+.-
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD------ 84 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD------ 84 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE------
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC------
Confidence 46777772 321 111 345679999999998532 222 2223333333333 2 4788872
Q ss_pred CcCCceEEEeCCCCC-eEEcCCCCCCCcceeEEEECCEEEEEc-cc---cCCCCcccceEEEEECCCC-ceEecCC--CC
Q 013929 238 NILSSAEMYNSETQT-WKVLPSMKNPRKMCSGVFMDGKFYVIG-GI---GGSDSKVLTCGEEYDLETE-TWTEIPN--MS 309 (433)
Q Consensus 238 ~~~~~~~~yd~~t~~-W~~~~~~p~~r~~~~~~~~~g~lyv~G-G~---~~~~~~~~~~v~~yd~~t~-~W~~~~~--~p 309 (433)
.....+.+||..+++ |+.+.....+...+.....+|..+-.. |. .......-.....|.+-+. ++-.++. +.
T Consensus 85 ~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~ 164 (287)
T PF03022_consen 85 SGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLR 164 (287)
T ss_dssp TTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHC
T ss_pred CCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhh
Confidence 223479999999965 777665443433444555666555331 21 1000000112344555443 3334321 00
Q ss_pred CCCCCCC-----CCCcCCCCcCCCCEEEE-ECCEEEEEecCCCeEEEEeCCC----CcEEEeccCCCcccCCCcccEEEE
Q 013929 310 PARGGAA-----RGTEMPASAEAPPLVAV-VNNELYAADYADMEVRKYDKER----RLWFTIGRLPERANSMNGWGLAFR 379 (433)
Q Consensus 310 ~~r~~~~-----~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~i~~yd~~~----~~W~~v~~lp~~~~~~~~~~~~~~ 379 (433)
.+..... .+...-.......+.+. -+|.||+.--..+.|.++|+.+ .....+..=+.... |-.++.
T Consensus 165 ~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~----~pd~~~ 240 (287)
T PF03022_consen 165 DPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQ----WPDGLK 240 (287)
T ss_dssp STT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GS----SEEEEE
T ss_pred CccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceee----ccceee
Confidence 0000000 00000000000012333 3688888777788999999987 56677764444222 224455
Q ss_pred EeC---CEEEEEcC
Q 013929 380 ACG---DRLIVIGG 390 (433)
Q Consensus 380 ~~~---~~l~v~GG 390 (433)
... +.||+.--
T Consensus 241 i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 241 IDPEGDGYLWVLSN 254 (287)
T ss_dssp E-T--TS-EEEEE-
T ss_pred eccccCceEEEEEC
Confidence 555 88888764
No 230
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=32.71 E-value=4.4e+02 Score=25.02 Aligned_cols=76 Identities=11% Similarity=0.146 Sum_probs=41.3
Q ss_pred eeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCE----EEEE
Q 013929 266 CSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNE----LYAA 341 (433)
Q Consensus 266 ~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~----ly~~ 341 (433)
-+++.+++...+-||.+ ..|.+||..++. ++..+...-... .+..+... -.+-
T Consensus 46 itavAVs~~~~aSGssD-------etI~IYDm~k~~--qlg~ll~Hagsi--------------taL~F~~~~S~shLlS 102 (362)
T KOG0294|consen 46 ITALAVSGPYVASGSSD-------ETIHIYDMRKRK--QLGILLSHAGSI--------------TALKFYPPLSKSHLLS 102 (362)
T ss_pred eeEEEecceeEeccCCC-------CcEEEEeccchh--hhcceeccccce--------------EEEEecCCcchhheee
Confidence 35567788777777765 358999998764 333222211110 11111111 2233
Q ss_pred ecCCCeEEEEeCCCCcEEEeccCCC
Q 013929 342 DYADMEVRKYDKERRLWFTIGRLPE 366 (433)
Q Consensus 342 gg~~~~i~~yd~~~~~W~~v~~lp~ 366 (433)
|..++.|.+|+ .+.|..+..+..
T Consensus 103 ~sdDG~i~iw~--~~~W~~~~slK~ 125 (362)
T KOG0294|consen 103 GSDDGHIIIWR--VGSWELLKSLKA 125 (362)
T ss_pred ecCCCcEEEEE--cCCeEEeeeecc
Confidence 44567788887 567877765543
No 231
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=31.32 E-value=3.9e+02 Score=28.33 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=20.8
Q ss_pred EEEECCEEEEEecCCCeEEEEeCCC
Q 013929 331 VAVVNNELYAADYADMEVRKYDKER 355 (433)
Q Consensus 331 ~~~~~~~ly~~gg~~~~i~~yd~~~ 355 (433)
....+|.+++.||..++|..||...
T Consensus 626 sFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 626 SFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEecCCCEEEecCCCCeEEEEEchh
Confidence 3456899999999999999998754
No 232
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=31.08 E-value=1.8e+02 Score=29.25 Aligned_cols=104 Identities=13% Similarity=0.223 Sum_probs=56.1
Q ss_pred EECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCC--CCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCe
Q 013929 270 FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPA--RGGAARGTEMPASAEAPPLVAVVNNELYAADYADME 347 (433)
Q Consensus 270 ~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~--r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~ 347 (433)
.-||+-.++||.. .++-++|+.+-+=+.-..++.. -.. ...+..|-++.+..-..+.
T Consensus 474 ~pdgrtLivGGea-------stlsiWDLAapTprikaeltssapaCy--------------ALa~spDakvcFsccsdGn 532 (705)
T KOG0639|consen 474 LPDGRTLIVGGEA-------STLSIWDLAAPTPRIKAELTSSAPACY--------------ALAISPDAKVCFSCCSDGN 532 (705)
T ss_pred cCCCceEEecccc-------ceeeeeeccCCCcchhhhcCCcchhhh--------------hhhcCCccceeeeeccCCc
Confidence 4589999999974 3456777766543332233321 111 1223346666665556788
Q ss_pred EEEEeCCCCcEEEeccCCCcccCCCcccEEEEEe--CCEEEEEcCCCCCCCCeeEEEEeecC
Q 013929 348 VRKYDKERRLWFTIGRLPERANSMNGWGLAFRAC--GDRLIVIGGPKASGEGFIELNSWVPS 407 (433)
Q Consensus 348 i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~ 407 (433)
|.+||+...+- |..++.... |+++..+ +|.=+-.||.++ .+.+|++.
T Consensus 533 I~vwDLhnq~~--VrqfqGhtD-----GascIdis~dGtklWTGGlDn------tvRcWDlr 581 (705)
T KOG0639|consen 533 IAVWDLHNQTL--VRQFQGHTD-----GASCIDISKDGTKLWTGGLDN------TVRCWDLR 581 (705)
T ss_pred EEEEEccccee--eecccCCCC-----CceeEEecCCCceeecCCCcc------ceeehhhh
Confidence 99999987652 333333222 1223322 354445677643 35666654
No 233
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=30.83 E-value=5.3e+02 Score=25.43 Aligned_cols=135 Identities=13% Similarity=0.154 Sum_probs=70.1
Q ss_pred eCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEE-EECCEEEEEccccCCCCcccceEEEEECCCCc
Q 013929 223 LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETET 301 (433)
Q Consensus 223 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~ 301 (433)
.+|.+.+-||.+..+ -++|+.|+.=..+=.- ..+.-+++. .-||.....||.+ +.+-++|+....
T Consensus 313 ~DGSL~~tGGlD~~~------RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~D-------nt~kVWDLR~r~ 378 (459)
T KOG0272|consen 313 PDGSLAATGGLDSLG------RVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSD-------NTCKVWDLRMRS 378 (459)
T ss_pred CCCceeeccCccchh------heeecccCcEEEEecc-cccceeeEeECCCceEEeecCCC-------CcEEEeeecccc
Confidence 388999999987553 3567666643221000 011112222 2356666666655 345667775443
Q ss_pred eEecCCCCCCCCCCCCCCcCCCCcCCCCEEEE--ECCEEEEEecCCCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEE
Q 013929 302 WTEIPNMSPARGGAARGTEMPASAEAPPLVAV--VNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFR 379 (433)
Q Consensus 302 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~--~~~~ly~~gg~~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~ 379 (433)
= +-.||.-..-. ..+.. ..|+..+..+..+.+-+|. +..|+.+..|...-... +++.
T Consensus 379 ~--ly~ipAH~nlV-------------S~Vk~~p~~g~fL~TasyD~t~kiWs--~~~~~~~ksLaGHe~kV----~s~D 437 (459)
T KOG0272|consen 379 E--LYTIPAHSNLV-------------SQVKYSPQEGYFLVTASYDNTVKIWS--TRTWSPLKSLAGHEGKV----ISLD 437 (459)
T ss_pred c--ceecccccchh-------------hheEecccCCeEEEEcccCcceeeec--CCCcccchhhcCCccce----EEEE
Confidence 2 22333222211 01222 2467677777778788876 56788887776543211 3333
Q ss_pred E-eCCEEEEEcCCC
Q 013929 380 A-CGDRLIVIGGPK 392 (433)
Q Consensus 380 ~-~~~~l~v~GG~~ 392 (433)
. .++..++.++++
T Consensus 438 is~d~~~i~t~s~D 451 (459)
T KOG0272|consen 438 ISPDSQAIATSSFD 451 (459)
T ss_pred eccCCceEEEeccC
Confidence 3 455666667664
No 234
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.77 E-value=3.6e+02 Score=30.11 Aligned_cols=111 Identities=19% Similarity=0.296 Sum_probs=0.0
Q ss_pred eEEcCCCCCCCcceeEEE----ECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCC
Q 013929 253 WKVLPSMKNPRKMCSGVF----MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAP 328 (433)
Q Consensus 253 W~~~~~~p~~r~~~~~~~----~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~ 328 (433)
|+.+..+...-.+..+++ ..|.+++.|+.. .|-++|..++. .+.++|..-..
T Consensus 1154 w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r--------~IRIWDa~~E~--~~~diP~~s~t-------------- 1209 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR--------SIRIWDAHKEQ--VVADIPYGSST-------------- 1209 (1387)
T ss_pred eccccccCccCCCCCeeeehhhhCCeEEecCCee--------EEEEEecccce--eEeecccCCCc--------------
Q ss_pred CEEEEE-----CCEEEEEecCCCeEEEEeCC-------CCcEEEec---cCCCcccCCCccc-EEEEEeCCEEEEE
Q 013929 329 PLVAVV-----NNELYAADYADMEVRKYDKE-------RRLWFTIG---RLPERANSMNGWG-LAFRACGDRLIVI 388 (433)
Q Consensus 329 ~~~~~~-----~~~ly~~gg~~~~i~~yd~~-------~~~W~~v~---~lp~~~~~~~~~~-~~~~~~~~~l~v~ 388 (433)
.+.+. +|.+++.|..++++..||.. ...|++-. +.-......+|++ ......+|.|+++
T Consensus 1210 -~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1210 -LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLL 1284 (1387)
T ss_pred -cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEE
No 235
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=30.37 E-value=2.1e+02 Score=28.91 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=51.5
Q ss_pred ECCEEEEECCCCCCcccceeEEEEEcCCCceecCCCCCC--CcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCC
Q 013929 175 VGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNA--PRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT 252 (433)
Q Consensus 175 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 252 (433)
-+++-+++||+ ...+-+||..+-+=+.-..++. +-++.-.+..+.++...--. -..+.+||+...+
T Consensus 475 pdgrtLivGGe------astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccs------dGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 475 PDGRTLIVGGE------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS------DGNIAVWDLHNQT 542 (705)
T ss_pred CCCceEEeccc------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc------CCcEEEEEcccce
Confidence 36777888886 2347788887666544444443 22222333345565543211 2357888888764
Q ss_pred eEEcCCCCCCCcceeEEEE--CCEEEEEcccc
Q 013929 253 WKVLPSMKNPRKMCSGVFM--DGKFYVIGGIG 282 (433)
Q Consensus 253 W~~~~~~p~~r~~~~~~~~--~g~lyv~GG~~ 282 (433)
- +..++....+.++..+ +|.-...||.+
T Consensus 543 ~--VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 543 L--VRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred e--eecccCCCCCceeEEecCCCceeecCCCc
Confidence 2 2333333334444433 47777778876
No 236
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=29.91 E-value=4.5e+02 Score=25.00 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=46.3
Q ss_pred EEEECCEEEEEec-CCCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecCCC
Q 013929 331 VAVVNNELYAADY-ADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEG 409 (433)
Q Consensus 331 ~~~~~~~ly~~gg-~~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~ 409 (433)
+-..++..|++.. ....|..|+.+...-..+..-.... .++.+..+|+.+...|+. +++.+|++-..
T Consensus 193 iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n------~~aavSP~GRFia~~gFT------pDVkVwE~~f~ 260 (420)
T KOG2096|consen 193 IGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSN------YDAAVSPDGRFIAVSGFT------PDVKVWEPIFT 260 (420)
T ss_pred EeecCCceEEEEecCCCcEEEEecCCceeeeeccccccc------cceeeCCCCcEEEEecCC------CCceEEEEEec
Confidence 3455677777753 4578999998854444443211111 155667889999988884 34777766433
Q ss_pred -CCCceEecc
Q 013929 410 -PPQWNLLAR 418 (433)
Q Consensus 410 -~~~W~~v~~ 418 (433)
..+.+++.+
T Consensus 261 kdG~fqev~r 270 (420)
T KOG2096|consen 261 KDGTFQEVKR 270 (420)
T ss_pred cCcchhhhhh
Confidence 346666644
No 237
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=29.25 E-value=4.9e+02 Score=24.51 Aligned_cols=20 Identities=10% Similarity=0.140 Sum_probs=12.9
Q ss_pred EEEEecCCCeEEEEeCCCCc
Q 013929 338 LYAADYADMEVRKYDKERRL 357 (433)
Q Consensus 338 ly~~gg~~~~i~~yd~~~~~ 357 (433)
-.+.||.+++|.+||+..+.
T Consensus 188 qv~sggIdn~ikvWd~r~~d 207 (338)
T KOG0265|consen 188 QVISGGIDNDIKVWDLRKND 207 (338)
T ss_pred ceeeccccCceeeeccccCc
Confidence 34456677777777775543
No 238
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=29.02 E-value=2.2e+02 Score=23.24 Aligned_cols=69 Identities=13% Similarity=0.279 Sum_probs=39.2
Q ss_pred CEEEEEecCCCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEE---eCCEEEEEcCCCCCCCCeeEEEEeecCCCCCC
Q 013929 336 NELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRA---CGDRLIVIGGPKASGEGFIELNSWVPSEGPPQ 412 (433)
Q Consensus 336 ~~ly~~gg~~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~---~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~ 412 (433)
..+.++| ....+..||.+.|.=.--..+|..... ..+.. ....+.++||. ..+.-++.+-...-
T Consensus 64 ~D~LliG-t~t~llaYDV~~N~d~Fyke~~DGvn~-----i~~g~~~~~~~~l~ivGGn-------csi~Gfd~~G~e~f 130 (136)
T PF14781_consen 64 RDCLLIG-TQTSLLAYDVENNSDLFYKEVPDGVNA-----IVIGKLGDIPSPLVIVGGN-------CSIQGFDYEGNEIF 130 (136)
T ss_pred cCEEEEe-ccceEEEEEcccCchhhhhhCccceeE-----EEEEecCCCCCcEEEECce-------EEEEEeCCCCcEEE
Confidence 3456666 567899999998863222334444321 11112 24578888986 23445555545556
Q ss_pred ceEec
Q 013929 413 WNLLA 417 (433)
Q Consensus 413 W~~v~ 417 (433)
|+..+
T Consensus 131 WtVtg 135 (136)
T PF14781_consen 131 WTVTG 135 (136)
T ss_pred EEecc
Confidence 77654
No 239
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=27.74 E-value=4.7e+02 Score=23.84 Aligned_cols=175 Identities=15% Similarity=0.052 Sum_probs=90.2
Q ss_pred CCCcEEeCCCCCCccccccCCceEEEECCEEEEECCCCCCcccceeEEEEEcCCCc---eecCCCCCC---------Ccc
Q 013929 149 IRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS---WSSGMRMNA---------PRC 216 (433)
Q Consensus 149 ~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~~~p~---------~r~ 216 (433)
....|...-.+|.+.. +..-++.+|.+|.-.+ .+..+.+||..++. |..+|.+-. +..
T Consensus 54 ~~~~~~~~~~lp~~~~----gTg~VVynGs~yynk~------~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~s 123 (249)
T KOG3545|consen 54 KRGRKAEKYRLPYSWD----GTGHVVYNGSLYYNKA------GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHS 123 (249)
T ss_pred hccCcceEEeCCCCcc----ccceEEEcceEEeecc------CCcceEEEEeecceeeeeeeccccccCCCcccccCCCc
Confidence 3355555555665543 2234666777776543 34458889988853 556554311 122
Q ss_pred eeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCC----CCeEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceE
Q 013929 217 LFGSASLGEIAILAGGSDLEGNILSSAEMYNSET----QTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCG 292 (433)
Q Consensus 217 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t----~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v 292 (433)
..-.++...-++|+=-..++.. ...+-.+|+.+ .+|..-- + .+....+..+=|.+|++-...... ..--
T Consensus 124 diD~avDE~GLWviYat~~~~g-~iv~skLdp~tl~~e~tW~T~~--~-k~~~~~aF~iCGvLY~v~S~~~~~---~~i~ 196 (249)
T KOG3545|consen 124 DIDLAVDENGLWVIYATPENAG-TIVLSKLDPETLEVERTWNTTL--P-KRSAGNAFMICGVLYVVHSYNCTH---TQIS 196 (249)
T ss_pred cccceecccceeEEecccccCC-cEEeeccCHHHhheeeeecccc--C-CCCcCceEEEeeeeEEEeccccCC---ceEE
Confidence 2344555556676643333211 22246677743 4563321 1 123334445567888885554221 1122
Q ss_pred EEEECCCCceEecCCCCCC-CCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeC
Q 013929 293 EEYDLETETWTEIPNMSPA-RGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDK 353 (433)
Q Consensus 293 ~~yd~~t~~W~~~~~~p~~-r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~ 353 (433)
++||..+++=+.+. +|.+ +..+... -...-.+.+||+. ..+....|++
T Consensus 197 yaydt~~~~~~~~~-ipf~N~y~~~~~----------idYNP~D~~LY~w--dng~~l~y~l 245 (249)
T KOG3545|consen 197 YAYDTTTGTQERID-LPFPNPYSYATM----------IDYNPRDRRLYAW--DNGHQLTYNL 245 (249)
T ss_pred EEEEcCCCceeccc-ccccchhhhhhc----------cCCCcccceeeEe--cCCcEEEEEe
Confidence 78999988875554 3322 2222000 0112346789988 4566777765
No 240
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.54 E-value=3.1e+02 Score=26.66 Aligned_cols=108 Identities=11% Similarity=0.183 Sum_probs=56.5
Q ss_pred CEEEEEccCCCCCCcCCceEEEeCCC--CCeEEcCC------CCCCCcceeEEEECC--E-EEEEccccCCCCcccceEE
Q 013929 225 EIAILAGGSDLEGNILSSAEMYNSET--QTWKVLPS------MKNPRKMCSGVFMDG--K-FYVIGGIGGSDSKVLTCGE 293 (433)
Q Consensus 225 ~~iyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~------~p~~r~~~~~~~~~g--~-lyv~GG~~~~~~~~~~~v~ 293 (433)
..|+.+||-.. .+.+.+||+++ +.|+.-.. |-.|.+...+..+.+ . -++.+ .....+-
T Consensus 161 p~Iva~GGke~----~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~-------T~~hqvR 229 (412)
T KOG3881|consen 161 PYIVATGGKEN----INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATI-------TRYHQVR 229 (412)
T ss_pred CceEecCchhc----ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEE-------ecceeEE
Confidence 36888888653 35567777765 45765322 233444444555554 2 22221 1223467
Q ss_pred EEECCCCc--eEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCCcE
Q 013929 294 EYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLW 358 (433)
Q Consensus 294 ~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~~W 358 (433)
.||+..+. -..++-+-.+.+. .....++...++|...+.+..||..++.-
T Consensus 230 ~YDt~~qRRPV~~fd~~E~~is~---------------~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 230 LYDTRHQRRPVAQFDFLENPISS---------------TGLTPSGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred EecCcccCcceeEeccccCccee---------------eeecCCCcEEEEecccchhheecccCcee
Confidence 79998653 1122222222222 12233455555665678899999888764
No 241
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=27.47 E-value=4.8e+02 Score=27.36 Aligned_cols=66 Identities=12% Similarity=0.188 Sum_probs=40.5
Q ss_pred ECCEEEEEccccCCCCcccceEEEEECCCCceEecC--------CCC-CCCCCCCCCCcCCCCcCCCCEEEEE--CCEEE
Q 013929 271 MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIP--------NMS-PARGGAARGTEMPASAEAPPLVAVV--NNELY 339 (433)
Q Consensus 271 ~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~--------~~p-~~r~~~~~~~~~~~~~~~~~~~~~~--~~~ly 339 (433)
-+..+++-||.+. .|..||..+..=+.+. +++ .++.+. -..+. .+.++
T Consensus 128 k~~~lvaSgGLD~-------~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si--------------YSLA~N~t~t~i 186 (735)
T KOG0308|consen 128 KNNELVASGGLDR-------KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI--------------YSLAMNQTGTII 186 (735)
T ss_pred cCceeEEecCCCc-------cEEEEEccCcchhhhhhccccccccCCCCCccce--------------eeeecCCcceEE
Confidence 3677888898873 4677888766332222 222 122221 12223 34577
Q ss_pred EEecCCCeEEEEeCCCCc
Q 013929 340 AADYADMEVRKYDKERRL 357 (433)
Q Consensus 340 ~~gg~~~~i~~yd~~~~~ 357 (433)
+-||..+.+..||+.++.
T Consensus 187 vsGgtek~lr~wDprt~~ 204 (735)
T KOG0308|consen 187 VSGGTEKDLRLWDPRTCK 204 (735)
T ss_pred EecCcccceEEecccccc
Confidence 788888999999999874
No 242
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.44 E-value=6.2e+02 Score=24.74 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=73.6
Q ss_pred CEEEEECCCCCCcccceeEEEEEcCCC--ceec--CCC----CCCCcceeeEEEeCC---EEEEEccCCCCCCcCCceEE
Q 013929 177 TELLVFGRELTAHHISHVIYRYSILTN--SWSS--GMR----MNAPRCLFGSASLGE---IAILAGGSDLEGNILSSAEM 245 (433)
Q Consensus 177 ~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~--~~~----~p~~r~~~~~~~~~~---~iyv~GG~~~~~~~~~~~~~ 245 (433)
..|+.+||.. ..+.+.+||.... .|+. ++. |-.|...-.+..+.+ +-++.+ .....+-.
T Consensus 161 p~Iva~GGke----~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~------T~~hqvR~ 230 (412)
T KOG3881|consen 161 PYIVATGGKE----NINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATI------TRYHQVRL 230 (412)
T ss_pred CceEecCchh----cccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEE------ecceeEEE
Confidence 3677788872 3456777777654 4653 221 223333333333322 233321 23567889
Q ss_pred EeCCCCCeEEcCCCCCCCc--ceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCC
Q 013929 246 YNSETQTWKVLPSMKNPRK--MCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPA 323 (433)
Q Consensus 246 yd~~t~~W~~~~~~p~~r~--~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~ 323 (433)
||+.++. +.+...+..-. .+.....+++..++|-.. ..+-.||..++.--.. --....+
T Consensus 231 YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~-------g~l~~FD~r~~kl~g~--~~kg~tG--------- 291 (412)
T KOG3881|consen 231 YDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNTK-------GQLAKFDLRGGKLLGC--GLKGITG--------- 291 (412)
T ss_pred ecCcccC-cceeEeccccCcceeeeecCCCcEEEEeccc-------chhheecccCceeecc--ccCCccC---------
Confidence 9999764 22222221111 122223355555554332 3456788877642211 0111111
Q ss_pred CcCCCCEEEEECC-EEEEEecCCCeEEEEeCCCC
Q 013929 324 SAEAPPLVAVVNN-ELYAADYADMEVRKYDKERR 356 (433)
Q Consensus 324 ~~~~~~~~~~~~~-~ly~~gg~~~~i~~yd~~~~ 356 (433)
...++....+ .+...+|-...+.+||.+++
T Consensus 292 ---sirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 292 ---SIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ---CcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 1123444444 56667788888999998884
No 243
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=25.73 E-value=5.7e+02 Score=24.06 Aligned_cols=137 Identities=13% Similarity=0.159 Sum_probs=68.7
Q ss_pred EEEEEcCCCceecCCCCCCCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeE---Ec-CCCCCCCcceeEE-
Q 013929 195 IYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWK---VL-PSMKNPRKMCSGV- 269 (433)
Q Consensus 195 ~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~---~~-~~~p~~r~~~~~~- 269 (433)
+.++|..|..=...-+||....-.++.+-.+..+..||.++. .-+|+..+..=+ .+ ..++....+.+.+
T Consensus 79 lIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~------Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~ 152 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNK------CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCR 152 (343)
T ss_pred EEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCce------eEEEecccccccccceeeeeecCccceeEEEE
Confidence 444454433222222344443333334447888889997643 456777654211 11 1233333444444
Q ss_pred EECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEE
Q 013929 270 FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVR 349 (433)
Q Consensus 270 ~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~ 349 (433)
.+++.-.+.|.-+ .+...+|+++++=...- .+|..-.+.. ++.-.+.+.|+-|+......
T Consensus 153 f~dD~~ilT~SGD-------~TCalWDie~g~~~~~f------~GH~gDV~sl-------sl~p~~~ntFvSg~cD~~ak 212 (343)
T KOG0286|consen 153 FLDDNHILTGSGD-------MTCALWDIETGQQTQVF------HGHTGDVMSL-------SLSPSDGNTFVSGGCDKSAK 212 (343)
T ss_pred EcCCCceEecCCC-------ceEEEEEcccceEEEEe------cCCcccEEEE-------ecCCCCCCeEEeccccccee
Confidence 3444333333211 23466888887643321 1221000000 01111788999999999999
Q ss_pred EEeCCCCc
Q 013929 350 KYDKERRL 357 (433)
Q Consensus 350 ~yd~~~~~ 357 (433)
.||.....
T Consensus 213 lWD~R~~~ 220 (343)
T KOG0286|consen 213 LWDVRSGQ 220 (343)
T ss_pred eeeccCcc
Confidence 99988874
No 244
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=25.43 E-value=7.3e+02 Score=25.24 Aligned_cols=91 Identities=12% Similarity=0.141 Sum_probs=49.4
Q ss_pred ceEEEeCCCCCeEEcCCCCCCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCC
Q 013929 242 SAEMYNSETQTWKVLPSMKNPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGT 319 (433)
Q Consensus 242 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~ 319 (433)
.++.++-.+..=..+.++- +...+++.. +|....+|-.+ ..+++||.++.+= +..+.......
T Consensus 198 ~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~-------g~v~iwD~~~~k~--~~~~~~~h~~r---- 262 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSD-------GTVQIWDVKEQKK--TRTLRGSHASR---- 262 (484)
T ss_pred eEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecC-------CeEEEEehhhccc--cccccCCcCce----
Confidence 3444555544433333332 333344433 46777776544 2478888876542 22222111110
Q ss_pred cCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCC
Q 013929 320 EMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERR 356 (433)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~ 356 (433)
-++..-++.+...|.....|..+|....
T Consensus 263 ---------vg~laW~~~~lssGsr~~~I~~~dvR~~ 290 (484)
T KOG0305|consen 263 ---------VGSLAWNSSVLSSGSRDGKILNHDVRIS 290 (484)
T ss_pred ---------eEEEeccCceEEEecCCCcEEEEEEecc
Confidence 1345567888888888889999987654
No 245
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=24.43 E-value=6.7e+02 Score=24.46 Aligned_cols=186 Identities=12% Similarity=0.037 Sum_probs=96.2
Q ss_pred ceeEEEEEcCCCceecCCCCCCCcceee-EEEe-CCEEEEEccCCCCC-----CcCCceEEEeCCCCCeE--EcCCCCCC
Q 013929 192 SHVIYRYSILTNSWSSGMRMNAPRCLFG-SASL-GEIAILAGGSDLEG-----NILSSAEMYNSETQTWK--VLPSMKNP 262 (433)
Q Consensus 192 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~-~~~~-~~~iyv~GG~~~~~-----~~~~~~~~yd~~t~~W~--~~~~~p~~ 262 (433)
...++++|..+++...- .++ ...+. ++.. +++.++....+... .....++.+..-+..-+ .+-.-+..
T Consensus 149 ~~~l~v~Dl~tg~~l~d-~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~ 225 (414)
T PF02897_consen 149 WYTLRVFDLETGKFLPD-GIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDE 225 (414)
T ss_dssp EEEEEEEETTTTEEEEE-EEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTC
T ss_pred eEEEEEEECCCCcCcCC-ccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCC
Confidence 34689999999954321 111 22222 3333 33444443333321 12567888887776543 22222333
Q ss_pred Cc-ceeEE-EECCEEEEEccccCCCCcccceEEEEECCCC-----ceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEEC
Q 013929 263 RK-MCSGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETE-----TWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVN 335 (433)
Q Consensus 263 r~-~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~ 335 (433)
.. ...+. .-+++..++.-..+ . ..+.++..|..+. .|..+.+--..... .+...+
T Consensus 226 ~~~~~~~~~s~d~~~l~i~~~~~--~-~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~---------------~v~~~~ 287 (414)
T PF02897_consen 226 PFWFVSVSRSKDGRYLFISSSSG--T-SESEVYLLDLDDGGSPDAKPKLLSPREDGVEY---------------YVDHHG 287 (414)
T ss_dssp TTSEEEEEE-TTSSEEEEEEESS--S-SEEEEEEEECCCTTTSS-SEEEEEESSSS-EE---------------EEEEET
T ss_pred CcEEEEEEecCcccEEEEEEEcc--c-cCCeEEEEeccccCCCcCCcEEEeCCCCceEE---------------EEEccC
Confidence 33 22222 33555444433321 1 1477899999875 78877532222111 244568
Q ss_pred CEEEEEec---CCCeEEEEeCCCCc---EEE-eccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEEeecC
Q 013929 336 NELYAADY---ADMEVRKYDKERRL---WFT-IGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPS 407 (433)
Q Consensus 336 ~~ly~~gg---~~~~i~~yd~~~~~---W~~-v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~ 407 (433)
+.+|+... ....+..++..+.. |.. +.+-..... -..+...++.|++.--. +....+.+++++
T Consensus 288 ~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~-----l~~~~~~~~~Lvl~~~~----~~~~~l~v~~~~ 357 (414)
T PF02897_consen 288 DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS-----LEDVSLFKDYLVLSYRE----NGSSRLRVYDLD 357 (414)
T ss_dssp TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE-----EEEEEEETTEEEEEEEE----TTEEEEEEEETT
T ss_pred CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCcee-----EEEEEEECCEEEEEEEE----CCccEEEEEECC
Confidence 89999853 44789999988765 764 332222111 13455678888877643 345677777774
No 246
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=23.56 E-value=6.9e+02 Score=24.31 Aligned_cols=138 Identities=17% Similarity=0.108 Sum_probs=76.3
Q ss_pred eCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcCCCCCCCcceeEE--EECCEEEEEccccCCCCcccceEEEEECCCC
Q 013929 223 LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV--FMDGKFYVIGGIGGSDSKVLTCGEEYDLETE 300 (433)
Q Consensus 223 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~--~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~ 300 (433)
.+.++|+..+. .+.+.++|..+++-.. ..+.++.-+..+ ..++.+|+.-... ..+.+.+.|..++
T Consensus 84 ~~~~vyv~~~~------~~~v~vid~~~~~~~~--~~~vG~~P~~~~~~~~~~~vYV~n~~~-----~~~~vsvid~~t~ 150 (381)
T COG3391 84 AGNKVYVTTGD------SNTVSVIDTATNTVLG--SIPVGLGPVGLAVDPDGKYVYVANAGN-----GNNTVSVIDAATN 150 (381)
T ss_pred CCCeEEEecCC------CCeEEEEcCcccceee--EeeeccCCceEEECCCCCEEEEEeccc-----CCceEEEEeCCCC
Confidence 46789999543 5678899966665322 222223333333 3466899984321 2456888999888
Q ss_pred ceEecCCCC-CCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEecCCCeEEEEeCCCCcEEEecc----CCCcccCCCccc
Q 013929 301 TWTEIPNMS-PARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGR----LPERANSMNGWG 375 (433)
Q Consensus 301 ~W~~~~~~p-~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~i~~yd~~~~~W~~v~~----lp~~~~~~~~~~ 375 (433)
+=....+.- .+ .+. .+...++++|+.....+.+..+|..+..=.. .. .+..... ++
T Consensus 151 ~~~~~~~vG~~P-~~~--------------a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P---~~ 211 (381)
T COG3391 151 KVTATIPVGNTP-TGV--------------AVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGP---AG 211 (381)
T ss_pred eEEEEEecCCCc-ceE--------------EECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCC---ce
Confidence 644431110 11 221 1223355699987778889999988775332 21 1111110 12
Q ss_pred EEEEEeCCEEEEEcCCC
Q 013929 376 LAFRACGDRLIVIGGPK 392 (433)
Q Consensus 376 ~~~~~~~~~l~v~GG~~ 392 (433)
..+..-+.++|+.-...
T Consensus 212 i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 212 IAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEECCCCCEEEEEeccC
Confidence 44434566788876554
No 247
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=23.39 E-value=6e+02 Score=23.58 Aligned_cols=173 Identities=16% Similarity=0.145 Sum_probs=81.8
Q ss_pred cceeEEEEEcCCCceecCCCCC--CCcceeeEEEeCCEEEEEccCCCCCCcCCceEEEeCCCCCeEEcC-----CCCCCC
Q 013929 191 ISHVIYRYSILTNSWSSGMRMN--APRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLP-----SMKNPR 263 (433)
Q Consensus 191 ~~~~~~~yd~~t~~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-----~~p~~r 263 (433)
..+.+..+|..+++-...-..+ ..|..+ ..++.++++-- +....+...+.+||.....=.... .+|.+-
T Consensus 72 AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F---~~~gn~~l~~t-D~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ 147 (327)
T KOG0643|consen 72 ADQTAKLWDVETGKQLATWKTNSPVKRVDF---SFGGNLILAST-DKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD 147 (327)
T ss_pred ccceeEEEEcCCCcEEEEeecCCeeEEEee---ccCCcEEEEEe-hhhcCcceEEEEEEccCChhhhcccCceEEecCCc
Confidence 4456788899998743222222 222222 23444444421 111124567888888744322211 122222
Q ss_pred cceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCce-EecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEE
Q 013929 264 KMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETW-TEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYA 340 (433)
Q Consensus 264 ~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~ 340 (433)
.....+.. -++..+.|+.+| .+-.||..++.= ............ .....-+...|+
T Consensus 148 skit~a~Wg~l~~~ii~Ghe~G-------~is~~da~~g~~~v~s~~~h~~~In--------------d~q~s~d~T~Fi 206 (327)
T KOG0643|consen 148 SKITSALWGPLGETIIAGHEDG-------SISIYDARTGKELVDSDEEHSSKIN--------------DLQFSRDRTYFI 206 (327)
T ss_pred cceeeeeecccCCEEEEecCCC-------cEEEEEcccCceeeechhhhccccc--------------cccccCCcceEE
Confidence 33334433 355566666553 367799888632 111111110000 011223455666
Q ss_pred EecCCCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCC
Q 013929 341 ADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKA 393 (433)
Q Consensus 341 ~gg~~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~ 393 (433)
.|.....-..+|..+-+-.+--.-..+.. .+++....+.+++.||.+.
T Consensus 207 T~s~Dttakl~D~~tl~v~Kty~te~PvN-----~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 207 TGSKDTTAKLVDVRTLEVLKTYTTERPVN-----TAAISPLLDHVILGGGQEA 254 (327)
T ss_pred ecccCccceeeeccceeeEEEeeeccccc-----ceecccccceEEecCCcee
Confidence 66555666667766654333221122221 1445556788888888654
No 248
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=23.36 E-value=6.4e+02 Score=23.88 Aligned_cols=233 Identities=15% Similarity=0.166 Sum_probs=95.1
Q ss_pred eEEEECCEEEEECCCCC----CcccceeEEEEEcC-CCceecCCC-----CCCC---cceeeEEEeCCEEEEEcc-CCCC
Q 013929 171 ESLAVGTELLVFGRELT----AHHISHVIYRYSIL-TNSWSSGMR-----MNAP---RCLFGSASLGEIAILAGG-SDLE 236 (433)
Q Consensus 171 ~~~~~~~~iyv~GG~~~----~~~~~~~~~~yd~~-t~~W~~~~~-----~p~~---r~~~~~~~~~~~iyv~GG-~~~~ 236 (433)
+++.+++.|+++..... ..........+... ..+|+.... -... ...+..++-+++||++-| ++..
T Consensus 3 SLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~~ 82 (310)
T PF13859_consen 3 SLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSRS 82 (310)
T ss_dssp EEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS-
T ss_pred CEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEecc
Confidence 35677888887753211 11122223334333 346864321 1111 234566777999999865 3321
Q ss_pred -CCcCCceEEEeC--CCCCeEEcCCCCCCCc---------ceeEEEE-CCEEE-EEccccCCCCcccceEEEEECC-CCc
Q 013929 237 -GNILSSAEMYNS--ETQTWKVLPSMKNPRK---------MCSGVFM-DGKFY-VIGGIGGSDSKVLTCGEEYDLE-TET 301 (433)
Q Consensus 237 -~~~~~~~~~yd~--~t~~W~~~~~~p~~r~---------~~~~~~~-~g~ly-v~GG~~~~~~~~~~~v~~yd~~-t~~ 301 (433)
+.....+..+-. ...+|.....++..-. +-+.++. ||.|. =+-+..... ...-++.+|-.. ...
T Consensus 83 ~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~-~~~~SlIiYS~d~g~~ 161 (310)
T PF13859_consen 83 AGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNG-DGTVSLIIYSTDDGKT 161 (310)
T ss_dssp -SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT----EEEEEEEESSTTSS
T ss_pred ccccccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCc-cceEEEEEEECCCccc
Confidence 111222333322 2235977654432211 1112223 33322 222222111 113556778776 678
Q ss_pred eEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEE-CCEEEEEecCC-CeEEEEeC--CCCcEEE-eccCCCcccC---CCc
Q 013929 302 WTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYAD-MEVRKYDK--ERRLWFT-IGRLPERANS---MNG 373 (433)
Q Consensus 302 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~gg~~-~~i~~yd~--~~~~W~~-v~~lp~~~~~---~~~ 373 (433)
|+.-..++..-+.. ++++.- +++|.++.... +.-.+|.. ...+|++ +..|+.--.. ..+
T Consensus 162 W~lskg~s~~gC~~-------------psv~EWe~gkLlM~~~c~~g~rrVYeS~DmG~tWtea~gtlsrVw~ns~~~~~ 228 (310)
T PF13859_consen 162 WKLSKGMSPAGCSD-------------PSVVEWEDGKLLMMTACDDGRRRVYESGDMGTTWTEALGTLSRVWGNSQGVQG 228 (310)
T ss_dssp -EE-S----TT-EE-------------EEEEEE-TTEEEEEEE-TTS---EEEESSTTSS-EE-TTTTTT---SST----
T ss_pred eEeccccCCCCcce-------------EEEEeccCCeeEEEEecccceEEEEEEcccceehhhccCccceeeccccccCc
Confidence 99877776544443 578888 88999986433 32355543 3458998 4566532111 111
Q ss_pred ccEEE---EEeCC-EEEEEc--CCCC-CCCCeeEEEEeecCCCCCCceEeccc
Q 013929 374 WGLAF---RACGD-RLIVIG--GPKA-SGEGFIELNSWVPSEGPPQWNLLARK 419 (433)
Q Consensus 374 ~~~~~---~~~~~-~l~v~G--G~~~-~~~~~~~~~~~~~~~~~~~W~~v~~~ 419 (433)
.+..+ +.+++ +++++- ++.. ..+....++.|.-| .++=-.++++
T Consensus 229 ~~v~~~~ta~iegr~VmL~T~~~y~~~~~~~~~~L~LWlTD--n~r~~~vGpv 279 (310)
T PF13859_consen 229 GFVTAGITATIEGRKVMLYTQPVYSSGNEKEKGRLHLWLTD--NNRIFDVGPV 279 (310)
T ss_dssp -EEEE----EETTEEEEEEEEE---SS-T-T-B-EEEEEES--SS-EEEEEE-
T ss_pred cceeeeeeeccCCcEEEEEEEeeccccCccccceeEEEeCC--CcEEEEEecc
Confidence 22222 34554 555543 2222 23456778888864 3334444443
No 249
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=23.17 E-value=2e+02 Score=31.32 Aligned_cols=114 Identities=18% Similarity=0.093 Sum_probs=65.9
Q ss_pred CcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCCCCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEe
Q 013929 263 RKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAAD 342 (433)
Q Consensus 263 r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~g 342 (433)
+..+.....++..++.||.. +.+..||..+.+=.+......+. . .+.-.+++....|
T Consensus 137 ~~M~~~~~~~~~~~i~Gg~Q-------~~li~~Dl~~~~e~r~~~v~a~~--v--------------~imR~Nnr~lf~G 193 (1118)
T KOG1275|consen 137 TKMASSLHMGPSTLIMGGLQ-------EKLIHIDLNTEKETRTTNVSASG--V--------------TIMRYNNRNLFCG 193 (1118)
T ss_pred HHHHHHhccCCcceeecchh-------hheeeeecccceeeeeeeccCCc--e--------------EEEEecCcEEEee
Confidence 44455556678888888876 23567888887766654433221 1 3555688888888
Q ss_pred cCCCeEEEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCCCCC-C--CeeEEEEeec
Q 013929 343 YADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASG-E--GFIELNSWVP 406 (433)
Q Consensus 343 g~~~~i~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~-~--~~~~~~~~~~ 406 (433)
-..+.|..-|+.+.+= +..+...... .+-.-+.|++++.-|+.... + .-..+.+|++
T Consensus 194 ~t~G~V~LrD~~s~~~--iht~~aHs~s-----iSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 194 DTRGTVFLRDPNSFET--IHTFDAHSGS-----ISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred cccceEEeecCCcCce--eeeeeccccc-----eeeeeccCCeEEEeecccccccccccchhhhhhh
Confidence 7788898889877542 2222222111 22233455555555564432 1 1244566666
No 250
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=23.14 E-value=8.4e+02 Score=25.14 Aligned_cols=98 Identities=8% Similarity=0.061 Sum_probs=53.0
Q ss_pred CEEEEEccccCCCCcccceEEEEECCCCceEecC--CCCCCCCCCCCCCcCCCCcCCCCEEEE--ECCEEEEEecCCCeE
Q 013929 273 GKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIP--NMSPARGGAARGTEMPASAEAPPLVAV--VNNELYAADYADMEV 348 (433)
Q Consensus 273 g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~--~~~~ly~~gg~~~~i 348 (433)
..++.+.-.-...+...-+.-+|+...++-+.+. .+|.+-.- .++. .+...+++|-.+++|
T Consensus 219 ~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v---------------~~ca~sp~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 219 YQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQV---------------ICCARSPSEDKLVLGCEDGSI 283 (545)
T ss_pred cEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcc---------------eEEecCcccceEEEEecCCeE
Confidence 3455554322122334445567888777666553 22222111 2222 356778888888999
Q ss_pred EEEeCCCCcEEEeccCCCcccCCCcccEEEEEeCCEEEEEcCCC
Q 013929 349 RKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPK 392 (433)
Q Consensus 349 ~~yd~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~l~v~GG~~ 392 (433)
..||..++.=+.+ ..+..+. +...-.+|.++++|+..
T Consensus 284 iLyD~~~~~t~~~-ka~~~P~------~iaWHp~gai~~V~s~q 320 (545)
T PF11768_consen 284 ILYDTTRGVTLLA-KAEFIPT------LIAWHPDGAIFVVGSEQ 320 (545)
T ss_pred EEEEcCCCeeeee-eecccce------EEEEcCCCcEEEEEcCC
Confidence 9999887743322 1222111 22233477888888753
No 251
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.91 E-value=6.8e+02 Score=23.66 Aligned_cols=96 Identities=14% Similarity=0.152 Sum_probs=57.6
Q ss_pred CCceEEEeCCCCC----eEEcCCCCCCCcceeEE---E---ECCEEEEEccccCCCCcccceEEEEECCCCceEecCCCC
Q 013929 240 LSSAEMYNSETQT----WKVLPSMKNPRKMCSGV---F---MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMS 309 (433)
Q Consensus 240 ~~~~~~yd~~t~~----W~~~~~~p~~r~~~~~~---~---~~g~lyv~GG~~~~~~~~~~~v~~yd~~t~~W~~~~~~p 309 (433)
.+-++.||.++++ |++--.-+ +...+=+ . ++++|++.=+. +...--++..|..++.=+.+..-|
T Consensus 77 YSHVH~yd~e~~~VrLLWkesih~~--~~WaGEVSdIlYdP~~D~LLlAR~D----Gh~nLGvy~ldr~~g~~~~L~~~p 150 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESIHDK--TKWAGEVSDILYDPYEDRLLLARAD----GHANLGVYSLDRRTGKAEKLSSNP 150 (339)
T ss_pred cceEEEEEcCCCeEEEEEecccCCc--cccccchhheeeCCCcCEEEEEecC----CcceeeeEEEcccCCceeeccCCC
Confidence 4568999999886 66533322 2222211 2 46788877332 223335788888888888776555
Q ss_pred CCCCCCCCCCcCCCCcCCCCEEEEECCEEEEEe---cCCCeEEEEeCCCCcE
Q 013929 310 PARGGAARGTEMPASAEAPPLVAVVNNELYAAD---YADMEVRKYDKERRLW 358 (433)
Q Consensus 310 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~ly~~g---g~~~~i~~yd~~~~~W 358 (433)
... ...+.|-..|-+- +....|.+||+.+++|
T Consensus 151 s~K-----------------G~~~~D~a~F~i~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 151 SLK-----------------GTLVHDYACFGINNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred CcC-----------------ceEeeeeEEEeccccccCCceEEEEEccCCeE
Confidence 442 2334444444331 1246899999999999
No 252
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=20.02 E-value=56 Score=17.71 Aligned_cols=18 Identities=39% Similarity=0.670 Sum_probs=12.7
Q ss_pred eeeecCCCcceeecCCCccccc
Q 013929 3 CMIDLNGKRPLEIDGDDDCHHQ 24 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ 24 (433)
|..++.|+.=. |++|..+
T Consensus 3 C~yEl~Gg~Cn----d~~C~~Q 20 (23)
T PF10650_consen 3 CPYELTGGVCN----DPDCEFQ 20 (23)
T ss_pred CccccCCCeeC----CCCCCcc
Confidence 66777776554 8888765
Done!