Query 013930
Match_columns 433
No_of_seqs 138 out of 1469
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:48:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 9.1E-57 2E-61 423.0 28.6 384 39-428 42-449 (449)
2 PTZ00206 amino acid transporte 100.0 8.5E-55 1.8E-59 430.0 32.8 387 42-429 58-465 (467)
3 KOG1303 Amino acid transporter 100.0 6.8E-53 1.5E-57 404.3 32.8 391 37-431 31-437 (437)
4 PLN03074 auxin influx permease 100.0 2E-48 4.4E-53 382.5 29.6 383 39-432 41-455 (473)
5 PF01490 Aa_trans: Transmembra 100.0 1.2E-51 2.6E-56 406.1 1.3 380 42-425 1-408 (409)
6 KOG1305 Amino acid transporter 100.0 2.4E-43 5.1E-48 337.0 24.4 387 40-431 2-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 1.5E-44 3.2E-49 320.5 11.3 385 38-432 111-518 (524)
8 COG0814 SdaC Amino acid permea 100.0 2.5E-32 5.4E-37 265.0 29.5 380 39-424 4-411 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 100.0 2.5E-26 5.4E-31 221.7 30.6 367 42-417 1-391 (394)
10 TIGR00837 araaP aromatic amino 100.0 6.2E-26 1.3E-30 220.9 26.9 339 50-396 3-360 (381)
11 PRK10483 tryptophan permease; 99.9 4.8E-25 1E-29 210.5 31.9 371 39-419 6-401 (414)
12 PRK09664 tryptophan permease T 99.9 1.3E-24 2.9E-29 207.2 33.0 368 42-419 7-402 (415)
13 PRK15132 tyrosine transporter 99.9 1E-24 2.2E-29 209.3 31.9 366 45-419 4-390 (403)
14 PRK13629 threonine/serine tran 99.9 2.6E-20 5.7E-25 177.8 29.4 368 47-422 22-440 (443)
15 TIGR00814 stp serine transport 99.9 7.3E-21 1.6E-25 183.3 22.7 361 47-414 6-396 (397)
16 PRK10655 potE putrescine trans 99.8 1.1E-16 2.3E-21 158.9 33.0 238 39-284 3-247 (438)
17 PRK10435 cadB lysine/cadaverin 99.8 6.8E-16 1.5E-20 152.7 33.6 240 39-286 2-247 (435)
18 PRK10249 phenylalanine transpo 99.8 8.9E-16 1.9E-20 152.7 30.6 235 39-284 18-267 (458)
19 PRK10644 arginine:agmatin anti 99.8 2.4E-15 5.2E-20 149.4 33.4 240 39-285 5-250 (445)
20 TIGR00912 2A0309 spore germina 99.8 6.3E-16 1.4E-20 149.4 28.1 337 42-396 1-355 (359)
21 TIGR00905 2A0302 transporter, 99.8 1.9E-15 4E-20 151.2 32.3 241 39-285 4-257 (473)
22 TIGR01773 GABAperm gamma-amino 99.8 1.6E-15 3.5E-20 151.0 30.5 237 37-284 7-259 (452)
23 PRK15049 L-asparagine permease 99.8 1.6E-15 3.5E-20 152.1 30.0 346 39-395 25-406 (499)
24 TIGR00909 2A0306 amino acid tr 99.7 2E-15 4.3E-20 149.6 29.8 243 41-284 2-253 (429)
25 TIGR03810 arg_ornith_anti argi 99.7 3.7E-15 8.1E-20 148.9 31.6 239 42-286 1-254 (468)
26 TIGR00906 2A0303 cationic amin 99.7 2.4E-15 5.2E-20 152.4 29.8 353 39-395 25-411 (557)
27 PRK10746 putative transport pr 99.7 6.9E-15 1.5E-19 146.3 31.9 237 39-286 7-260 (461)
28 PRK11021 putative transporter; 99.7 1.6E-14 3.6E-19 142.0 34.0 229 44-281 1-232 (410)
29 PRK11387 S-methylmethionine tr 99.7 8E-15 1.7E-19 146.6 31.2 237 39-286 11-266 (471)
30 PRK11049 D-alanine/D-serine/gl 99.7 6.9E-15 1.5E-19 146.9 29.9 235 38-283 16-268 (469)
31 COG1113 AnsP Gamma-aminobutyra 99.7 1.1E-15 2.4E-20 144.0 21.9 345 39-395 10-389 (462)
32 TIGR00930 2a30 K-Cl cotranspor 99.7 9.6E-15 2.1E-19 154.7 31.4 242 39-281 73-335 (953)
33 KOG1287 Amino acid transporter 99.7 2.7E-15 5.9E-20 143.7 24.2 352 36-396 6-387 (479)
34 PRK10238 aromatic amino acid t 99.7 1.6E-14 3.4E-19 143.8 30.3 230 39-279 9-253 (456)
35 PRK10580 proY putative proline 99.7 8.2E-14 1.8E-18 138.9 34.3 233 38-281 5-254 (457)
36 PRK10836 lysine transporter; P 99.7 3.9E-14 8.5E-19 142.3 32.1 237 38-285 11-264 (489)
37 TIGR00908 2A0305 ethanolamine 99.7 1E-13 2.3E-18 137.7 30.9 231 39-280 4-245 (442)
38 TIGR00913 2A0310 amino acid pe 99.7 2.5E-13 5.3E-18 136.4 31.8 229 41-280 1-251 (478)
39 PF13520 AA_permease_2: Amino 99.7 2.2E-13 4.7E-18 135.0 30.0 236 44-287 1-247 (426)
40 TIGR00911 2A0308 L-type amino 99.6 2E-13 4.4E-18 137.7 29.3 243 37-285 37-294 (501)
41 PRK10197 gamma-aminobutyrate t 99.6 2.8E-13 6E-18 134.5 29.0 329 53-395 3-368 (446)
42 PRK11357 frlA putative fructos 99.6 8E-13 1.7E-17 131.5 28.4 235 39-282 5-251 (445)
43 COG0833 LysP Amino acid transp 99.6 1.3E-12 2.9E-17 126.0 27.8 346 39-395 41-428 (541)
44 PF03845 Spore_permease: Spore 99.6 4.8E-13 1E-17 127.0 24.0 285 43-339 1-297 (320)
45 KOG1286 Amino acid transporter 99.5 6.6E-13 1.4E-17 132.3 20.1 351 38-395 26-423 (554)
46 COG0531 PotE Amino acid transp 99.5 2.1E-11 4.6E-16 122.2 31.4 248 37-287 7-262 (466)
47 TIGR00907 2A0304 amino acid pe 99.5 1.3E-10 2.8E-15 116.9 33.7 239 39-280 9-271 (482)
48 TIGR03428 ureacarb_perm permea 99.5 3.3E-10 7.2E-15 113.5 34.5 249 38-286 9-273 (475)
49 PRK15238 inner membrane transp 99.4 4.2E-10 9.1E-15 113.4 31.2 241 40-282 5-267 (496)
50 TIGR03813 put_Glu_GABA_T putat 99.4 1E-09 2.2E-14 110.0 31.1 239 42-286 1-254 (474)
51 TIGR00910 2A0307_GadC glutamat 99.3 4.1E-09 8.8E-14 106.2 30.1 232 40-279 2-247 (507)
52 PF00324 AA_permease: Amino ac 99.2 8.6E-11 1.9E-15 118.0 13.6 232 52-289 5-263 (478)
53 KOG1289 Amino acid transporter 99.1 7E-08 1.5E-12 93.6 27.9 251 36-291 42-317 (550)
54 KOG3832 Predicted amino acid t 99.1 2.6E-09 5.7E-14 89.6 11.9 216 41-257 9-303 (319)
55 COG3949 Uncharacterized membra 99.0 4.4E-07 9.5E-12 82.6 22.8 218 47-279 6-231 (349)
56 TIGR00800 ncs1 NCS1 nucleoside 98.6 2.7E-05 5.8E-10 77.4 25.5 337 39-381 9-375 (442)
57 COG1457 CodB Purine-cytosine p 98.6 6.6E-05 1.4E-09 72.7 27.0 266 105-390 81-356 (442)
58 PRK11375 allantoin permease; P 98.5 0.00019 4E-09 71.9 27.5 335 39-381 22-389 (484)
59 TIGR02358 thia_cytX probable h 98.5 0.00024 5.1E-09 69.2 27.4 286 76-381 31-320 (386)
60 TIGR02119 panF sodium/pantothe 98.4 0.0012 2.6E-08 66.3 32.3 234 39-284 37-293 (471)
61 TIGR00796 livcs branched-chain 98.4 0.00048 1E-08 66.3 27.2 217 51-284 2-243 (378)
62 TIGR00835 agcS amino acid carr 98.4 0.00063 1.4E-08 66.1 27.2 147 41-200 44-200 (425)
63 COG0591 PutP Na+/proline sympo 98.4 0.00097 2.1E-08 67.1 29.3 145 39-195 35-185 (493)
64 TIGR00813 sss transporter, SSS 98.3 0.00043 9.3E-09 68.1 25.8 149 41-201 2-152 (407)
65 PRK12488 acetate permease; Pro 98.3 0.0034 7.4E-08 64.1 32.5 151 39-202 64-217 (549)
66 PF00474 SSF: Sodium:solute sy 98.3 0.00063 1.4E-08 66.9 25.4 149 41-201 5-156 (406)
67 PRK09442 panF sodium/panthothe 98.2 0.006 1.3E-07 61.5 31.2 233 39-283 38-293 (483)
68 PRK11017 codB cytosine permeas 98.2 0.0034 7.4E-08 61.6 28.6 282 76-381 44-329 (404)
69 PRK09395 actP acetate permease 98.1 0.015 3.2E-07 59.6 31.8 150 39-200 66-217 (551)
70 TIGR02711 symport_actP cation/ 98.0 0.024 5.1E-07 58.0 31.8 149 40-200 65-215 (549)
71 PRK00701 manganese transport p 98.0 0.012 2.6E-07 58.1 27.1 47 104-150 93-139 (439)
72 PRK15419 proline:sodium sympor 97.9 0.027 5.7E-07 57.1 30.0 152 39-201 37-196 (502)
73 COG1914 MntH Mn2+ and Fe2+ tra 97.9 0.03 6.5E-07 54.5 28.7 360 42-420 15-407 (416)
74 TIGR03648 Na_symport_lg probab 97.9 0.045 9.8E-07 56.1 32.5 150 39-200 29-180 (552)
75 COG1953 FUI1 Cytosine/uracil/t 97.9 0.015 3.2E-07 57.0 24.9 343 38-383 35-405 (497)
76 COG0733 Na+-dependent transpor 97.8 0.017 3.7E-07 55.8 24.8 236 40-281 5-269 (439)
77 PF02133 Transp_cyt_pur: Perme 97.7 0.00053 1.2E-08 68.2 13.9 241 40-284 5-259 (440)
78 TIGR02121 Na_Pro_sym sodium/pr 97.7 0.064 1.4E-06 54.1 31.4 152 39-201 33-192 (487)
79 PRK10484 putative transporter; 97.7 0.075 1.6E-06 54.1 29.8 158 39-201 35-197 (523)
80 PF02554 CstA: Carbon starvati 97.5 0.0083 1.8E-07 56.5 17.3 192 40-258 48-241 (376)
81 KOG1288 Amino acid transporter 97.3 0.045 9.9E-07 55.1 20.1 239 43-283 66-351 (945)
82 KOG2082 K+/Cl- cotransporter K 97.2 0.15 3.3E-06 52.0 22.7 107 41-148 112-222 (1075)
83 PF00209 SNF: Sodium:neurotran 97.2 0.15 3.3E-06 51.9 23.8 50 228-277 250-300 (523)
84 PF01235 Na_Ala_symp: Sodium:a 97.2 0.26 5.7E-06 47.9 23.6 54 37-90 12-66 (416)
85 PF01566 Nramp: Natural resist 97.1 0.25 5.5E-06 47.6 23.4 86 103-199 40-127 (358)
86 PF02028 BCCT: BCCT family tra 97.0 0.36 7.8E-06 48.2 23.3 27 39-65 70-96 (485)
87 PF05525 Branch_AA_trans: Bran 96.9 0.23 5E-06 48.6 20.6 320 43-392 2-353 (427)
88 COG1966 CstA Carbon starvation 96.6 0.058 1.3E-06 53.2 13.9 105 43-147 51-156 (575)
89 PRK15015 carbon starvation pro 96.5 0.033 7.2E-07 56.2 12.1 105 43-147 82-187 (701)
90 KOG2083 Na+/K+ symporter [Inor 95.8 0.045 9.7E-07 54.4 8.8 228 41-277 27-274 (643)
91 COG4147 DhlC Predicted symport 95.8 2.1 4.5E-05 42.0 27.0 213 60-284 60-294 (529)
92 PRK09928 choline transport pro 95.4 3.9 8.5E-05 42.4 25.5 26 39-64 88-113 (679)
93 PHA02764 hypothetical protein; 95.1 0.68 1.5E-05 42.8 13.0 93 40-133 10-105 (399)
94 KOG2349 Na+:iodide/myo-inosito 94.4 1.1 2.4E-05 45.4 13.9 234 39-285 42-298 (585)
95 TIGR00842 bcct choline/carniti 94.2 6.5 0.00014 39.0 25.0 24 41-64 34-57 (453)
96 TIGR00796 livcs branched-chain 94.1 0.45 9.8E-06 46.0 10.3 50 103-152 253-302 (378)
97 PRK15433 branched-chain amino 93.8 7.3 0.00016 38.4 24.5 320 45-392 9-356 (439)
98 PRK09950 putative transporter; 93.7 8.6 0.00019 38.7 25.9 24 41-64 81-104 (506)
99 PF05525 Branch_AA_trans: Bran 92.8 0.58 1.3E-05 45.8 8.7 68 103-180 259-326 (427)
100 COG4145 PanF Na+/panthothenate 91.7 13 0.00027 35.6 23.0 238 40-289 37-300 (473)
101 COG1114 BrnQ Branched-chain am 90.7 3.6 7.9E-05 39.7 11.2 68 103-180 261-328 (431)
102 KOG3660 Sodium-neurotransmitte 90.1 26 0.00057 36.4 21.6 115 175-289 225-353 (629)
103 COG1115 AlsT Na+/alanine sympo 89.9 21 0.00045 35.1 23.1 315 39-371 58-416 (452)
104 PRK03356 L-carnitine/gamma-but 89.8 24 0.00052 35.6 26.7 25 41-65 83-107 (504)
105 TIGR01197 nramp NRAMP (natural 86.8 32 0.0007 33.5 27.9 82 103-195 62-145 (390)
106 PRK15433 branched-chain amino 85.9 4.4 9.5E-05 39.9 8.7 64 106-180 266-329 (439)
107 PLN02680 carbon-monoxide oxyge 83.4 11 0.00025 33.5 9.3 98 222-325 45-142 (232)
108 cd08762 Cyt_b561_CYBASC3 Verte 73.2 23 0.00051 30.1 7.9 107 214-325 25-133 (179)
109 KOG2466 Uridine permease/thiam 70.9 1.2E+02 0.0026 30.4 16.0 257 35-299 47-333 (572)
110 COG0814 SdaC Amino acid permea 67.7 1.3E+02 0.0028 29.6 19.4 53 344-396 324-377 (415)
111 KOG1289 Amino acid transporter 65.5 1E+02 0.0022 31.3 11.6 51 103-153 323-373 (550)
112 COG1292 BetT Choline-glycine b 65.1 1.6E+02 0.0035 29.8 21.8 28 38-65 82-109 (537)
113 COG1114 BrnQ Branched-chain am 62.1 1.6E+02 0.0036 28.8 22.2 77 43-126 4-85 (431)
114 cd08765 Cyt_b561_CYBRD1 Verteb 54.1 39 0.00085 28.1 5.6 100 222-326 10-111 (153)
115 TIGR00909 2A0306 amino acid tr 53.1 1.9E+02 0.0041 28.4 11.6 48 105-152 264-311 (429)
116 PLN02810 carbon-monoxide oxyge 52.2 1.4E+02 0.0031 26.5 9.1 97 223-325 46-142 (231)
117 KOG1277 Endosomal membrane pro 51.7 2.5E+02 0.0055 27.8 12.8 11 52-62 293-303 (593)
118 KOG1619 Cytochrome b [Energy p 50.0 1.1E+02 0.0024 27.4 8.0 105 215-324 45-150 (245)
119 PF05915 DUF872: Eukaryotic pr 49.8 74 0.0016 25.0 6.3 66 43-110 38-112 (115)
120 COG4858 Uncharacterized membra 42.9 2.2E+02 0.0047 24.5 9.4 33 69-101 118-151 (226)
121 cd08766 Cyt_b561_ACYB-1_like P 40.5 1.2E+02 0.0026 24.9 6.5 99 222-326 6-104 (144)
122 TIGR00797 matE putative efflux 39.2 3.3E+02 0.0071 25.5 13.3 39 244-282 51-91 (342)
123 TIGR00907 2A0304 amino acid pe 37.7 4.3E+02 0.0094 26.4 13.6 48 105-152 289-337 (482)
124 PRK13183 psbN photosystem II r 36.4 41 0.00088 21.4 2.4 29 260-288 5-33 (46)
125 PF11085 YqhR: Conserved membr 35.8 2.7E+02 0.0059 23.5 10.0 15 56-70 47-61 (173)
126 PF00902 TatC: Sec-independent 35.3 3.1E+02 0.0068 24.1 10.0 37 304-340 62-98 (215)
127 KOG4812 Golgi-associated prote 35.1 74 0.0016 28.3 4.6 76 346-425 157-245 (262)
128 PF02468 PsbN: Photosystem II 33.4 41 0.00088 21.1 2.0 27 262-288 4-30 (43)
129 PRK11403 hypothetical protein; 32.4 2.2E+02 0.0048 22.1 6.2 62 369-430 30-91 (113)
130 PF03613 EIID-AGA: PTS system 32.0 2.6E+02 0.0056 25.7 7.9 47 44-97 108-156 (264)
131 CHL00182 tatC Sec-independent 31.5 4E+02 0.0086 24.2 10.1 36 305-340 80-115 (249)
132 PF11239 DUF3040: Protein of u 30.9 1.2E+02 0.0027 22.0 4.7 28 43-70 36-63 (82)
133 PRK11281 hypothetical protein; 30.8 6.6E+02 0.014 28.5 12.0 29 259-287 542-570 (1113)
134 CHL00020 psbN photosystem II p 30.8 41 0.00088 21.1 1.7 27 262-288 4-30 (43)
135 PF07954 DUF1689: Protein of u 30.4 1.3E+02 0.0029 24.9 5.2 59 372-430 35-93 (152)
136 COG0534 NorM Na+-driven multid 29.2 4.6E+02 0.01 26.1 10.0 29 255-283 312-340 (455)
137 PF05805 L6_membrane: L6 membr 29.1 1.1E+02 0.0024 26.5 4.7 66 365-430 43-117 (195)
138 COG0534 NorM Na+-driven multid 29.1 5.9E+02 0.013 25.4 10.7 129 253-392 86-217 (455)
139 PLN02351 cytochromes b561 fami 28.4 2.8E+02 0.0061 25.0 7.2 72 250-325 73-145 (242)
140 KOG1305 Amino acid transporter 28.3 5.9E+02 0.013 25.1 12.7 249 171-421 138-405 (411)
141 cd08764 Cyt_b561_CG1275_like N 28.1 2.6E+02 0.0057 24.7 7.0 108 215-326 15-123 (214)
142 PF03169 OPT: OPT oligopeptide 27.7 3.5E+02 0.0075 28.4 9.1 60 56-117 365-427 (624)
143 PF04835 Pox_A9: A9 protein co 26.3 1.5E+02 0.0032 19.6 3.7 29 262-290 24-52 (54)
144 TIGR00906 2A0303 cationic amin 26.0 7.4E+02 0.016 25.5 15.2 45 106-150 300-344 (557)
145 TIGR00945 tatC Twin arginine t 26.0 4.6E+02 0.0099 23.1 10.7 37 304-340 58-94 (215)
146 PF12794 MscS_TM: Mechanosensi 25.9 5.9E+02 0.013 24.3 11.5 34 259-292 46-79 (340)
147 PHA02680 ORF090 IMV phosphoryl 25.3 1.4E+02 0.003 22.0 3.8 57 234-291 18-75 (91)
148 TIGR00905 2A0302 transporter, 24.8 5.9E+02 0.013 25.4 10.0 46 107-152 270-315 (473)
149 PRK10921 twin-arginine protein 21.0 6.4E+02 0.014 23.0 9.9 34 306-339 71-104 (258)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=9.1e-57 Score=423.01 Aligned_cols=384 Identities=24% Similarity=0.361 Sum_probs=341.8
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhh-----CCCCCCHHHHHH
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDV-----DSNIRSYPDIGD 112 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~-----~~~~~~y~~l~~ 112 (433)
+.++..|..++..|+.++++|+|+|++|+||+++|++ |.+...+.++++.|+++.+++|.++ .....+|.+.++
T Consensus 42 ~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~ 121 (449)
T KOG1304|consen 42 DREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAE 121 (449)
T ss_pred cCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 3456799999999999999999999999999999999 9999999999999999999998654 223356666655
Q ss_pred ----------HhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccc
Q 013930 113 ----------RAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWL 182 (433)
Q Consensus 113 ----------~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 182 (433)
+.+|+++|.+++..+.++++|.|++|++++++.++++.+..... ..+.+.++.+..+..+++++.
T Consensus 122 ~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~-----~~s~~~~i~~~~~~~lll~~I 196 (449)
T KOG1304|consen 122 SAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPG-----VLSVRLYILIQLPPLLLLNLI 196 (449)
T ss_pred HHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCC-----CccHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999833221 113557888888899999999
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhhhhcccccccccccCcccccCCchhHhHhHhhhccccccchhhHHhhccccccch--
Q 013930 183 DNLSLLSYVSASGVLASVITLGSIVWTGAFDGVGFHQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFS-- 260 (433)
Q Consensus 183 ~~l~~l~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~-- 260 (433)
||+|.++.+|.++.+..+..+.++.++...+.++.++.+...++.+++.++|+.+|||+|+.++.|++++||+|++++
T Consensus 197 r~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~ 276 (449)
T KOG1304|consen 197 RNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGP 276 (449)
T ss_pred HhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCc
Confidence 999999999999999999988888888776655555555556689999999999999999999999999999999999
Q ss_pred -hHHHHHHHHHHHHHHHHHhHHHhhccccchhHhhhcCCCCchhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcccCC-
Q 013930 261 -YVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQY- 338 (433)
Q Consensus 261 -~~~~~~~~i~~i~y~~~~~~gy~~fg~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~- 338 (433)
+++..++.+++++|..+|++||+.||+++++.+++|+|+ ++.....+.++.+..+.+||++++|..+.+|+.+.++-
T Consensus 277 ~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~ 355 (449)
T KOG1304|consen 277 FGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFS 355 (449)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcC
Confidence 999999999999999999999999999999999999999 78878889999999999999999999999998665332
Q ss_pred --CCCCceehhhHHHHHHHHHHHhhccchHHHHHHHhhhhhhhhhhhhhhHHHHHHhcccc--cchhHHHHHHHHHHHHH
Q 013930 339 --SKRPYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGAYR--RYGIEMIAILGIVSIGF 414 (433)
Q Consensus 339 --~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~~~--~~~~~~~~~~~~~~~g~ 414 (433)
++++.....|..++++++.+|..+|+++.+++++|+++++.+++++|++++++.+++++ +.+|+.+.|..++++|+
T Consensus 356 ~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~ 435 (449)
T KOG1304|consen 356 ENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGV 435 (449)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHH
Confidence 24456789999999999999999999999999999999999999999999999988774 56799999999999999
Q ss_pred HHHhHHHHHHHHHH
Q 013930 415 IVAAIGTYVSLVQI 428 (433)
Q Consensus 415 ~~~~~g~~~~i~~l 428 (433)
+..+.|||.++.++
T Consensus 436 ~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 436 FGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHhhhhhcC
Confidence 99999999999763
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=8.5e-55 Score=429.95 Aligned_cols=387 Identities=21% Similarity=0.293 Sum_probs=321.5
Q ss_pred CCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCccch
Q 013930 42 TKTSVFKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGR 120 (433)
Q Consensus 42 ~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~ 120 (433)
+..+..++++|++|+++|+|+|++|++|+++||+ |++++++.+.++.|+.+++.+++++ .+..+|+|++++++||+++
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~~~sY~~la~~~~G~~g~ 136 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TNIRTYEGVARVLLGPWGS 136 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHhCHHHH
Confidence 3567789999999999999999999999999999 9999999999999999999998876 4778999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccccc-ccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHHH
Q 013930 121 LIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELG-GFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLAS 199 (433)
Q Consensus 121 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 199 (433)
+++++.+.++++|.|++|+++.+|.++.+++....... ....+.+..+.++..++.+|+++.|+++.++++|.+++.++
T Consensus 137 ~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i 216 (467)
T PTZ00206 137 YYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFM 216 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998865432110 00111233444556778999999999999999999999888
Q ss_pred HHHHHhhhhcccccccccc---------cCc--cccc-CCchhHhHhHhhhccccccchhhHHhhcccc--ccchhHHHH
Q 013930 200 VITLGSIVWTGAFDGVGFH---------QKG--TLVN-WKGIPSSISLYAFCYCAHPVFPTLYTSMKKK--HQFSYVLLV 265 (433)
Q Consensus 200 ~~~~~~~i~~~~~~~~~~~---------~~~--~~~~-~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p--~~~~~~~~~ 265 (433)
++..+.+++....++.+.+ +.. ..++ ..+.+.++++.+|||.||.+++++++||||| +|+.++...
T Consensus 217 ~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~ 296 (467)
T PTZ00206 217 VYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTI 296 (467)
T ss_pred HHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHH
Confidence 8777666655443222111 000 1122 1357889999999999999999999999985 789999999
Q ss_pred HHHHHHHHHHHHHhHHHhhccccchhHhhhcC-CCCchhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcccCCC--CCC
Q 013930 266 CFFLCTFIYASMAIFGYMMFGSEVQSQITLNL-PTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYS--KRP 342 (433)
Q Consensus 266 ~~~i~~i~y~~~~~~gy~~fg~~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~--~~~ 342 (433)
++.+++++|.++|++||+.||+++++++++|+ |.++....++++..++.++.+||++.+|+|+.+++.+.++.+ +.+
T Consensus 297 s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~~~~~~ 376 (467)
T PTZ00206 297 AMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDARKVAFW 376 (467)
T ss_pred HHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcccCchh
Confidence 99999999999999999999999999999999 567777778888888899999999999999999998743322 334
Q ss_pred ceehhhHHHHHHHHHHHhhccchHHHHHHHhhhhhhhhhhhhhhHHHHHHhcc--cccchhHHHHHHHHHHHHHHHHhHH
Q 013930 343 YSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGA--YRRYGIEMIAILGIVSIGFIVAAIG 420 (433)
Q Consensus 343 ~~~~~~~~~~~~~~~ia~~~~~~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~g 420 (433)
++...+..+.+.+.++|+.+|+++.+++++|+++++.++|++|+++|++.... ++..+++++.+++++++|++..+.|
T Consensus 377 ~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~G 456 (467)
T PTZ00206 377 KHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFG 456 (467)
T ss_pred hHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEec
Confidence 55566777777889999999999999999999999999999999999984211 1123345688999999999999999
Q ss_pred HHHHHHHHH
Q 013930 421 TYVSLVQII 429 (433)
Q Consensus 421 ~~~~i~~l~ 429 (433)
||+++++.+
T Consensus 457 t~~si~~~~ 465 (467)
T PTZ00206 457 TGATIWGVT 465 (467)
T ss_pred chhHhhHHh
Confidence 999999876
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-53 Score=404.33 Aligned_cols=391 Identities=34% Similarity=0.610 Sum_probs=346.6
Q ss_pred CCCCCCCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCC-----HHHH
Q 013930 37 DDSRTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRS-----YPDI 110 (433)
Q Consensus 37 ~~~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~-----y~~l 110 (433)
+...+|+.|++++.++.++.++|.|+|+||+|+++.||. |++.+++.++++.||..+|.+|.+.++...+ |.|+
T Consensus 31 ~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl 110 (437)
T KOG1303|consen 31 PITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDL 110 (437)
T ss_pred ccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHH
Confidence 334577799999999999999999999999999999999 8999999999999999999999887655554 9999
Q ss_pred HHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHH
Q 013930 111 GDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSY 190 (433)
Q Consensus 111 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 190 (433)
++++||+++++++.+.+.+.+++.|+.|.+..++.++.+++....+.. ..+ .+.+++++.++.+|++++||++.+++
T Consensus 111 ~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~--~l~-~~~f~iif~~i~~~~s~lp~~~~l~~ 187 (437)
T KOG1303|consen 111 GQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN--SLD-KQYFIIIFGLIVLPLSQLPNFHSLSY 187 (437)
T ss_pred HHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--ccc-ceehhhhHHHHHHHHHHCCCcchhHH
Confidence 999999999999999999999999999999999999999988765532 233 55888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccccccC-cccccC--Cch-hHhHhHhhhccccccchhhHHhhccccccchhHHHHH
Q 013930 191 VSASGVLASVITLGSIVWTGAFDGVGFHQK-GTLVNW--KGI-PSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLLVC 266 (433)
Q Consensus 191 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~--~~~-~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~ 266 (433)
+|..+.+..+......++.+..++.+...+ ....++ ... +++++++.|+|.||..+|+++.+||+|++++|++..+
T Consensus 188 ~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis 267 (437)
T KOG1303|consen 188 LSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLIS 267 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHH
Confidence 999999999888888888877766544222 222222 222 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHhhccccchhHhhhcCCCCchhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcccCCC-----CC
Q 013930 267 FFLCTFIYASMAIFGYMMFGSEVQSQITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYS-----KR 341 (433)
Q Consensus 267 ~~i~~i~y~~~~~~gy~~fg~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~-----~~ 341 (433)
+.+++.+|+..++.||++|||+.+|+++.|+++..+....+++++.++.+.++.....|+.+.+|++...+.+ ..
T Consensus 268 ~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~ 347 (437)
T KOG1303|consen 268 YIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSL 347 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcccccccc
Confidence 9999999999999999999999999999999766677788999999999999999999999999999875544 44
Q ss_pred CceehhhHHHHHHHHHHHhhccchHHHHHHHhhhhhhhhhhhhhhHHHHHHhcccccchhHHHHHHHH-HHHHHHHHhHH
Q 013930 342 PYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGAYRRYGIEMIAILGI-VSIGFIVAAIG 420 (433)
Q Consensus 342 ~~~~~~~~~~~~~~~~ia~~~~~~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~g 420 (433)
..|.+.|..+++.+.++|+.+|.|+++++++|+.....+.+++|+++|++.+|.+ +...+++.++.. +++|+++++.+
T Consensus 348 ~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~-~~s~~~~~~~~~~~~~~~~~~v~~ 426 (437)
T KOG1303|consen 348 VLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPK-RFSPKWLLNWVIILVVGLLLSVLA 426 (437)
T ss_pred ceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHhhhhhhhhHHHHH
Confidence 5899999999999999999999999999999999999999999999999998877 566667777777 79999999999
Q ss_pred HHHHHHHHHHh
Q 013930 421 TYVSLVQIIQH 431 (433)
Q Consensus 421 ~~~~i~~l~~~ 431 (433)
...+++.++.+
T Consensus 427 ~~~~~~~li~~ 437 (437)
T KOG1303|consen 427 AVGGVRSLIID 437 (437)
T ss_pred HHHHHHHHhhC
Confidence 99999888753
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=2e-48 Score=382.53 Aligned_cols=383 Identities=17% Similarity=0.198 Sum_probs=310.9
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhh----CCC-C-------C
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDV----DSN-I-------R 105 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~----~~~-~-------~ 105 (433)
...++.+..++.+++++..+|.|+|+||+||+++||+ |++.+++.+.++.|+.+++.++..+ +++ . .
T Consensus 41 ~~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~ 120 (473)
T PLN03074 41 LLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVI 120 (473)
T ss_pred cccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHH
Confidence 3466889999999999999999999999999999999 9999999999999999998876432 221 1 2
Q ss_pred CHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCC
Q 013930 106 SYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNL 185 (433)
Q Consensus 106 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 185 (433)
+|.|+++..+||+++.+..+...+++++.|+.|.+..++.+..+-+.. +.+.|.+++.++.+|++++|++
T Consensus 121 ~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~----------~~~~~~~i~~~v~~~~~~i~sl 190 (473)
T PLN03074 121 QWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNL----------DKRTWTYIFGACCATTVFIPSF 190 (473)
T ss_pred HHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCc----------CCCeEEeehHHHHHHHHHccCH
Confidence 678999999999999999999999999999999998888777653221 1336677788888889999999
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhcccccccccccC-cccccCCchhHhHhHhhhccccccchhhHHhhccccccchhHHH
Q 013930 186 SLLSYVSASGVLASVITLGSIVWTGAFDGVGFHQK-GTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLL 264 (433)
Q Consensus 186 ~~l~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~ 264 (433)
+.++++|.+++.+.++..+.++......+...+.+ ..+.++..++.++++++|+|+||..+|++++|||||+|+++...
T Consensus 191 ~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~ 270 (473)
T PLN03074 191 HNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYL 270 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccchHH
Confidence 99999999998876654333333322221111111 11223445667778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHhhccccchh--HhhhcCCCCchhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcccC-CCCC
Q 013930 265 VCFFLCTFIYASMAIFGYMMFGSEVQS--QITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQ-YSKR 341 (433)
Q Consensus 265 ~~~~i~~i~y~~~~~~gy~~fg~~~~~--~~l~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~-~~~~ 341 (433)
.+...++..|+.+++.||+.|||++.+ +.+.|.|++.+ ..+++.+.+++.+.+||+++.|+.+..|+....+ .++.
T Consensus 271 l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~ 349 (473)
T PLN03074 271 AATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHDTKSI 349 (473)
T ss_pred HHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccccccH
Confidence 999999999999999999999998764 55667886654 4678888999999999999999999999887543 2334
Q ss_pred CceehhhHHHHHHHHHHHhhccchHHHHHHHhhhhhhhhhhhhhhHHHHHHhccc--------------ccchhHHHHHH
Q 013930 342 PYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGAY--------------RRYGIEMIAIL 407 (433)
Q Consensus 342 ~~~~~~~~~~~~~~~~ia~~~~~~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~~--------------~~~~~~~~~~~ 407 (433)
..|...|..++++++++|..+|+|+.+++++||++++.+++++|+++|++.++++ ++++++.++|+
T Consensus 350 ~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 429 (473)
T PLN03074 350 CLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNA 429 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhh
Confidence 5588899999999999999999999999999999999999999999999866542 12233568999
Q ss_pred HHHHHHHH-HHhHHHHHHHHHHHHhh
Q 013930 408 GIVSIGFI-VAAIGTYVSLVQIIQHY 432 (433)
Q Consensus 408 ~~~~~g~~-~~~~g~~~~i~~l~~~~ 432 (433)
++++++.+ ..+.|+|++++++++++
T Consensus 430 ~iiv~~~~~g~~~G~~asi~~ii~~~ 455 (473)
T PLN03074 430 FVVVWVLVVGFGFGGWASMTNFVRQI 455 (473)
T ss_pred HHHHhhhhHhhccchHHHHHHHHHhh
Confidence 99986444 47899999999999875
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.2e-51 Score=406.08 Aligned_cols=380 Identities=33% Similarity=0.551 Sum_probs=329.1
Q ss_pred CCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhh---CCCCCCHHHHHHHhcCc
Q 013930 42 TKTSVFKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDV---DSNIRSYPDIGDRAFGQ 117 (433)
Q Consensus 42 ~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~---~~~~~~y~~l~~~~~G~ 117 (433)
||.|+++++++++|+++|+|+|++|++++++||+ |++++++.+.++.++.+++.++.++ +++..+|+|++++.+||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 6899999999999999999999999999999999 9999999999999999999999875 35899999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHH
Q 013930 118 KGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVL 197 (433)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 197 (433)
++++++++.+.+.++|.+++|.+..+|.+.++++....+ ...++..+.++..++++|+++.|+++.+++.+.++.+
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~----~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~ 156 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD----LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLF 156 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccccccccc----ccccccccccccccccccccccchhhHHHHHhhhhhh
Confidence 999999999999999999999999999999999875432 1123556677788899999999999999999999999
Q ss_pred HHHHHHHhhhhccccccc----ccccC--cccccCCchhHhHhHhhhccccccchhhHHhhccccccch---hHHHHHHH
Q 013930 198 ASVITLGSIVWTGAFDGV----GFHQK--GTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFS---YVLLVCFF 268 (433)
Q Consensus 198 ~~~~~~~~~i~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~---~~~~~~~~ 268 (433)
+.++.+...++....... +...+ ....++.++++++++.+|||.||+++|++++|||+|+|++ ++...++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~ 236 (409)
T PF01490_consen 157 SIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMI 236 (409)
T ss_pred ccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhh
Confidence 888642222222221111 11111 1234557899999999999999999999999999997766 99999999
Q ss_pred HHHHHHHHHHhHHHhhccccchhHhhhcCCCCchhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcccC-----------
Q 013930 269 LCTFIYASMAIFGYMMFGSEVQSQITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQ----------- 337 (433)
Q Consensus 269 i~~i~y~~~~~~gy~~fg~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~----------- 337 (433)
+++++|..+|..||++||++++++++.|++++++...+++.+..++.+.+||++.+|.++.+++.+.++
T Consensus 237 ~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~ 316 (409)
T PF01490_consen 237 ICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNT 316 (409)
T ss_pred hhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccc
Confidence 999999999999999999999999999999988777899999999999999999999999999988642
Q ss_pred CCCCCceehhhHHHHHHHHHHHhhccchHHHHHHHhhhhhhhhhhhhhhHHHHHHhcccccch-h---HHHHHHHHHHHH
Q 013930 338 YSKRPYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGAYRRYG-I---EMIAILGIVSIG 413 (433)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~~~~~~-~---~~~~~~~~~~~g 413 (433)
+.++++|...|+.+++.++++|..+|+++++++++|++++..++|++|+++|+|.+++++++. + +...+++.+++|
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 396 (409)
T PF01490_consen 317 PSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFG 396 (409)
T ss_pred cccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEe
Confidence 234567899999999999999999999999999999999999999999999999988874222 1 125578889999
Q ss_pred HHHHhHHHHHHH
Q 013930 414 FIVAAIGTYVSL 425 (433)
Q Consensus 414 ~~~~~~g~~~~i 425 (433)
++.++.|+|+++
T Consensus 397 ~~~~~~~~~~~i 408 (409)
T PF01490_consen 397 VVLMVFGTYQSI 408 (409)
T ss_pred eehhHHhHHHHc
Confidence 999999999876
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-43 Score=336.99 Aligned_cols=387 Identities=25% Similarity=0.391 Sum_probs=328.9
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCcc
Q 013930 40 RTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQK 118 (433)
Q Consensus 40 ~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~ 118 (433)
.+++.|...+++++.|+++|+|++++|++|++.|.+ |++++.+.+.++.++.+++.++.++. ++.+|++++++.+|+.
T Consensus 2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~-~~~ty~~l~~~~~g~~ 80 (411)
T KOG1305|consen 2 MSGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKS-GERTYSSLGDLIFGKL 80 (411)
T ss_pred CCCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhc-CCCCHHHHHHHHcCCC
Confidence 456789999999999999999999999999999998 99999999999999999999998876 4559999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccccc--ccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHH
Q 013930 119 GRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELG--GFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGV 196 (433)
Q Consensus 119 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 196 (433)
++........+...| |++|.+.++|.+..+........+ .++.+++..+.+....++.|+++.|+++.+++.|.++.
T Consensus 81 g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~ 159 (411)
T KOG1305|consen 81 GKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSL 159 (411)
T ss_pred ceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 977777777777777 799999999999966544332111 11234444467788899999999999999999999999
Q ss_pred HHHHHHHHhhhhccccccc--c--cccCcccccCCchhHhHhHhhhccccccchhhHHhhcccc--ccchhHHHHHHHHH
Q 013930 197 LASVITLGSIVWTGAFDGV--G--FHQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK--HQFSYVLLVCFFLC 270 (433)
Q Consensus 197 ~~~~~~~~~~i~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p--~~~~~~~~~~~~i~ 270 (433)
.+.++..+.+++....... . ....+....+++++.++++++|+|.||+++.++++|||+| +|+.++...+...+
T Consensus 160 ~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~ 239 (411)
T KOG1305|consen 160 ASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILA 239 (411)
T ss_pred HHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHH
Confidence 9999988888887765322 1 1111222233689999999999999999999999999999 57999999999999
Q ss_pred HHHHHHHHhHHHhhccccchhHhhhcCCCCchh------HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcccCC-----C
Q 013930 271 TFIYASMAIFGYMMFGSEVQSQITLNLPTSKLS------SRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQY-----S 339 (433)
Q Consensus 271 ~i~y~~~~~~gy~~fg~~~~~~~l~~~~~~~~~------~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~-----~ 339 (433)
..+|..+|..||+.||+++.+|++.++++.+.. ....+....+..+.++|+..+|+|.+++....+.+ .
T Consensus 240 ~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~ 319 (411)
T KOG1305|consen 240 TLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSF 319 (411)
T ss_pred HHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCc
Confidence 999999999999999999999999999876443 35777888889999999999999999888765433 3
Q ss_pred CCCceehhhHHHHHHHHHHHhhccchHHHHHHHhhhhhhhhhhhhhhHHHHHHhcccccchhHHHHHHHHHHHHHHHHhH
Q 013930 340 KRPYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGAYRRYGIEMIAILGIVSIGFIVAAI 419 (433)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (433)
++.++.+.+..++....+.|+.+|+++.+++++||+++..++|++|+++|++.+|+ ..+++...++...+++...+.
T Consensus 320 s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~---~~~~~~~~~~~~~~~~~~~i~ 396 (411)
T KOG1305|consen 320 SGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK---KSREPLGALIFLILGVLLSII 396 (411)
T ss_pred cceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc---ccccchHHHHHHHHHHHHHHH
Confidence 45667888999999999999999999999999999999999999999999988886 345677788889999999999
Q ss_pred HHHHHHHHHHHh
Q 013930 420 GTYVSLVQIIQH 431 (433)
Q Consensus 420 g~~~~i~~l~~~ 431 (433)
|+...+.++..+
T Consensus 397 ~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 397 GVAVMIYDLLAK 408 (411)
T ss_pred HHHHHHHHHHhc
Confidence 999999888753
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-44 Score=320.52 Aligned_cols=385 Identities=25% Similarity=0.373 Sum_probs=337.8
Q ss_pred CCCCCCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCC-------CCCCHHHH
Q 013930 38 DSRTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDS-------NIRSYPDI 110 (433)
Q Consensus 38 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~-------~~~~y~~l 110 (433)
.+.+.+++.+|+..|+.|++-|.=+++||+|....||.++..++.++.+++|+..++++|..... .+++|-++
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaI 190 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAI 190 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHH
Confidence 35668999999999999999999999999999999999999999999999999999999976532 35799999
Q ss_pred HHHhcCcc-chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchH
Q 013930 111 GDRAFGQK-GRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLS 189 (433)
Q Consensus 111 ~~~~~G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 189 (433)
+..+++++ |++.+.+.+.+.+..+|+.|.+..+|.+.+.+|..+.+ ++-|+++..+..+|.+++|++|..+
T Consensus 191 A~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd--------~~sWm~i~~a~LLpc~FLk~Lk~VS 262 (524)
T KOG4303|consen 191 ADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVD--------KASWMMITSASLLPCSFLKDLKIVS 262 (524)
T ss_pred HHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCcc--------ccchhhhhhHHHhhhHHHHHHHHHH
Confidence 99999876 55888999999999999999999999999999977644 3367788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccccc--ccccccCcccccCCchhHhHhHhhhccccccchhhHHhhccccccchhHHHHHH
Q 013930 190 YVSASGVLASVITLGSIVWTGAFD--GVGFHQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLLVCF 267 (433)
Q Consensus 190 ~~s~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~ 267 (433)
.+|.+..+.-+.+=++++.++... ++.+..-....+..+++..+++++|+|..|..+|++...|++|+++.-.+-++-
T Consensus 263 ~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsH 342 (524)
T KOG4303|consen 263 RLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSH 342 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHH
Confidence 999998888877766666665433 344443344567788999999999999999999999999999999988888999
Q ss_pred HHHHHHHHHHHhHHHhhccccchhHhhhcCCCCchhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcccCCC--------
Q 013930 268 FLCTFIYASMAIFGYMMFGSEVQSQITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYS-------- 339 (433)
Q Consensus 268 ~i~~i~y~~~~~~gy~~fg~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~-------- 339 (433)
+-..++-.++|+++|+.|++.+++.+.+|+|+..+. .+.+++.++..+.+||+.++...+.+|+-+....+
T Consensus 343 IAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsfk-~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscy 421 (524)
T KOG4303|consen 343 IAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSFK-ILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCY 421 (524)
T ss_pred HHHHHHHHHHHHheeeeechhhHHHHhcCCCccchh-hhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceee
Confidence 999999999999999999999999999999976665 46778888899999999999999999986653221
Q ss_pred ---C--CCceehhhHHHHHHHHHHHhhccchHHHHHHHhhhhhhhhhhhhhhHHHHHHhcccccchhHHHHHHHHHHHHH
Q 013930 340 ---K--RPYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGAYRRYGIEMIAILGIVSIGF 414 (433)
Q Consensus 340 ---~--~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~~~~~~~~~~~~~~~~~~g~ 414 (433)
. +.+-...|+++++.+.+.|+.+|.+..+++++|++.+.+++|+.|+++|++++.+. ....++.++..++.+|.
T Consensus 422 s~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~-L~~~e~~fD~~Ii~~G~ 500 (524)
T KOG4303|consen 422 SPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKT-LNNFEKRFDQGIIIMGC 500 (524)
T ss_pred CCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh-hhhHHHhhheeEEEEee
Confidence 1 23356789999999999999999999999999999999999999999999998887 55678899999999999
Q ss_pred HHHhHHHHHHHHHHHHhh
Q 013930 415 IVAAIGTYVSLVQIIQHY 432 (433)
Q Consensus 415 ~~~~~g~~~~i~~l~~~~ 432 (433)
.+++.|.|-+..+++++|
T Consensus 501 ~~~vsG~y~S~~~Li~A~ 518 (524)
T KOG4303|consen 501 SVCVSGVYFSSMELIRAI 518 (524)
T ss_pred eEEEEeEehhhHHHHHHH
Confidence 999999999999999876
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-32 Score=264.99 Aligned_cols=380 Identities=19% Similarity=0.223 Sum_probs=285.9
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCC-CCHHHHHHHhcC
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNI-RSYPDIGDRAFG 116 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~-~~y~~l~~~~~G 116 (433)
..+.+.+..++++++.++++|+|+|++|++++..|+. +++++++.+.+++++++++.|+..+.++. .++.+++++.+|
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G 83 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLG 83 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhC
Confidence 4667889999999999999999999999999999998 99999999999999999999999988766 499999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHH
Q 013930 117 QKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGV 196 (433)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 196 (433)
|+++++.++.+.+.+++.+.+|.+..++.+.++++......+ ..|....+++..++.++++.++...++..+.+..
T Consensus 84 ~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~----~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~ 159 (415)
T COG0814 84 KKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNP----LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVF 159 (415)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCC----cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999986332211 2355777777788888998999999999999888
Q ss_pred HHHHHHHHhhhhcccccccccc--cCcc-cccCCchhHhHhHhhhccccccchhhHHhhcccc-cc-chhHHHHHHHHHH
Q 013930 197 LASVITLGSIVWTGAFDGVGFH--QKGT-LVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQ-FSYVLLVCFFLCT 271 (433)
Q Consensus 197 ~~~~~~~~~~i~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~-~~~~~~~~~~i~~ 271 (433)
..+.+.++...+.....+...- .+.. +.++.++..++|+++|||.||+++|++.+|||++ +| .+|+...+..+..
T Consensus 160 ~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~ 239 (415)
T COG0814 160 GKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIAL 239 (415)
T ss_pred HHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 8888777766666543322111 1111 3667789999999999999999999999999987 44 9999999999999
Q ss_pred HHHHHHHhHHHhhccccchhHhhhcCCCCchhHHHHHHHHHHHHhhhhhhhhhhH--------------HHHHHHHcccC
Q 013930 272 FIYASMAIFGYMMFGSEVQSQITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPI--------------VNSIKMRASTQ 337 (433)
Q Consensus 272 i~y~~~~~~gy~~fg~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~--------------~~~~~~~~~~~ 337 (433)
++|..+++.+|..+|+++.++++.+.++++..... ..........+++...++. +|.+++.+.++
T Consensus 240 vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~-~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~ 318 (415)
T COG0814 240 VLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSA-LAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKS 318 (415)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHH-HHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhc
Confidence 99999999999999999999999999876443211 1111112223333333333 34444444331
Q ss_pred C--CCCCc-----eehhhHHHHHHHHHHHhhccchHHHHHHHhhhhhhhhhhhhhhHHHHHHhcccccchhHHHHHHHHH
Q 013930 338 Y--SKRPY-----SLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGAYRRYGIEMIAILGIV 410 (433)
Q Consensus 338 ~--~~~~~-----~~~~~~~~~~~~~~ia~~~~~~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~~~~~~~~~~~~~~~~ 410 (433)
+ ++|.+ ........+..+..++...+..+.+++.+|+.....+.++.|...+.|....+ +.+.++....+++
T Consensus 319 ~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~-~~~g~~~~~~~v~ 397 (415)
T COG0814 319 NSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALK-VYGGNFLLLLLVL 397 (415)
T ss_pred cCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcee-ecCCCchhHHHHH
Confidence 1 11111 12223333345555555567777777777777777777777777776555444 2333235788888
Q ss_pred HHHHHHHhHHHHHH
Q 013930 411 SIGFIVAAIGTYVS 424 (433)
Q Consensus 411 ~~g~~~~~~g~~~~ 424 (433)
++|+..+....++.
T Consensus 398 ~~Gi~~~~~~~~~~ 411 (415)
T COG0814 398 LFGILVILSPFLAT 411 (415)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877766654
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.96 E-value=2.5e-26 Score=221.65 Aligned_cols=367 Identities=17% Similarity=0.204 Sum_probs=275.0
Q ss_pred CCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCccch
Q 013930 42 TKTSVFKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGR 120 (433)
Q Consensus 42 ~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~ 120 (433)
++.+..++++.+.++++|+|+|+||.+.+..|.. +.+.+++.+...++++.++.|+..+.++..++.+++++.+||+++
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~ 80 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGG 80 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHH
Confidence 3567889999999999999999999999999998 999999999999999999999988888899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHHHH
Q 013930 121 LIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASV 200 (433)
Q Consensus 121 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 200 (433)
++..+.+.+..+..+.+|....++.++++++...... . +++....++.++...+. ..+-+...+++...+...+
T Consensus 81 ~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~----~-~~~~~~~~f~~i~~~iv-~~g~~~v~~~n~~lv~~~i 154 (394)
T PF03222_consen 81 IVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTD----L-SPWLSSLLFTIIFGGIV-YFGTKAVDRINRVLVFGMI 154 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCC----C-cHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987654210 1 12233333333322222 1233456666665555555
Q ss_pred HHHHhhhhcccccccccc----cCcccccCCchhHhHhHhhhccccccchhhHHhhccc-cccchhHHHHHHHHHHHHHH
Q 013930 201 ITLGSIVWTGAFDGVGFH----QKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKK-KHQFSYVLLVCFFLCTFIYA 275 (433)
Q Consensus 201 ~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~-p~~~~~~~~~~~~i~~i~y~ 275 (433)
..++..+....-+ .+.+ .+....++...+.++|+.++||..|+.+|++.+.+++ +||.+|++..+..+..++|+
T Consensus 155 ~~~~~l~~~~~p~-~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl 233 (394)
T PF03222_consen 155 ISFIILVVYLIPH-WNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYL 233 (394)
T ss_pred HHHHHHHHHHhhh-cCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333211 1111 1223457778899999999999999999999999995 58999999999999999998
Q ss_pred HHHhHHHhhc-----------cccchh--HhhhcCCCCchhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcccCCCCCC
Q 013930 276 SMAIFGYMMF-----------GSEVQS--QITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYSKRP 342 (433)
Q Consensus 276 ~~~~~gy~~f-----------g~~~~~--~~l~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~ 342 (433)
+.-...-..- +++..+ ..+.+..++++...+...+..+.+.+||-=.....+|.+++.++. ++++.
T Consensus 234 ~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~-~~~~~ 312 (394)
T PF03222_consen 234 LWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL-KNNSS 312 (394)
T ss_pred HHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Ccccc
Confidence 8644443211 111111 223344555666667788888888999999999999999999865 44445
Q ss_pred ceehhhHHHHHHHHHHHhhccc-hHHHHHHHhhhhhhhhhhhhhhHHHHHHhcccccchh----HHHHHHHHHHHHHHHH
Q 013930 343 YSLLISTPLVISTVIVALVVPF-FGYLMTLVGAFLSVTASVILPCLCYLKISGAYRRYGI----EMIAILGIVSIGFIVA 417 (433)
Q Consensus 343 ~~~~~~~~~~~~~~~ia~~~~~-~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~~~~~~~----~~~~~~~~~~~g~~~~ 417 (433)
.|........+++.++|...|+ +...+++.| .....+..++|+++.+|.|+++++..+ .+.....++.+|+...
T Consensus 313 ~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~i~ii 391 (394)
T PF03222_consen 313 GRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFGILII 391 (394)
T ss_pred chHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHHHHHH
Confidence 5666677788899999999986 889999999 888899999999999999877643322 2444455555555443
No 10
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.95 E-value=6.2e-26 Score=220.85 Aligned_cols=339 Identities=14% Similarity=0.152 Sum_probs=258.0
Q ss_pred HHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCccchhHHHHHHH
Q 013930 50 CFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRLIVSVFMN 128 (433)
Q Consensus 50 ~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~ 128 (433)
....+++++|+|++++|.++++.|.. +++.+++.+.++.++..++.|...+.|+..++.+++++.+||+++++..+..+
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 44578999999999999999999887 99999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHHhhhh
Q 013930 129 IELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVITLGSIVW 208 (433)
Q Consensus 129 ~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~ 208 (433)
+.++..+.+|.+..++.+.++++..... . . .++...+++.+++.++. .++.+...+++.+.+...+..++.++.
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~~--~--~-~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~l~~~ii 156 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFGF--P--W-SARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIAFALVFS 156 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCC--C--c-cHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987642211 0 1 12233333444444444 567888888888887777665555444
Q ss_pred ccccc-ccccccCc--ccccCCchhHhHhHhhhccccccchhhHHhhcc-ccccchhHHHHHHHHHHHHHHHHHhHHHhh
Q 013930 209 TGAFD-GVGFHQKG--TLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMK-KKHQFSYVLLVCFFLCTFIYASMAIFGYMM 284 (433)
Q Consensus 209 ~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~~~~i~~i~y~~~~~~gy~~ 284 (433)
.+..+ +.+...+. .+.++.++..+++...++|.+|+.++++.+|++ ++||.+|++..+..+++++|+++.......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~ 236 (381)
T TIGR00837 157 GLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGN 236 (381)
T ss_pred HHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33221 11111111 123456788999999999988888999999997 458999999999999999999998877776
Q ss_pred ccccchhHhhh-------------cCCCCchhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcccCCCCCCceehhhHHH
Q 013930 285 FGSEVQSQITL-------------NLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYSKRPYSLLISTPL 351 (433)
Q Consensus 285 fg~~~~~~~l~-------------~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (433)
.+.+.-++... +..+..+...+...+..+...+++.-...+.++.+.+.++++++ +.+|.....+.
T Consensus 237 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~-~~~~~~~~~~~ 315 (381)
T TIGR00837 237 LPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS-KKGRFKTGLLT 315 (381)
T ss_pred CCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-cCCCchhhhhh
Confidence 65433222111 11122334455667777788899998899999999888876433 33466677888
Q ss_pred HHHHHHHHhhccchH-HHHHHHhhhhhhhhhhhhhhHHHHHHhccc
Q 013930 352 VISTVIVALVVPFFG-YLMTLVGAFLSVTASVILPCLCYLKISGAY 396 (433)
Q Consensus 352 ~~~~~~ia~~~~~~~-~v~~l~G~~~~~~~~~ilP~~~~l~~~~~~ 396 (433)
.+++.++|.+.|+.. ..++.+| +.+..+.+++|+++++|.||++
T Consensus 316 ~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 316 FLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred HHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 889999999998755 8999999 7888899999999999988764
No 11
>PRK10483 tryptophan permease; Provisional
Probab=99.95 E-value=4.8e-25 Score=210.46 Aligned_cols=371 Identities=15% Similarity=0.121 Sum_probs=274.5
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCc
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQ 117 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 117 (433)
.++++.+..++.+.+.+++||+|+|++|.+-++.|+. +.+++++.+....+++.++.|+..+.++..++..++|+.+||
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~ 85 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGK 85 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCh
Confidence 4667899999999999999999999999999999999 999999999999999999999987778889999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHH
Q 013930 118 KGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVL 197 (433)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 197 (433)
+++.+..+.+.+..+..+.+|+.-.++.+++.++....+.+ ++.-.+++.++...+.. ...+...+++..-+.
T Consensus 86 ~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~------~~~~~llF~~~~~~iv~-~gt~~vd~~n~~l~~ 158 (414)
T PRK10483 86 GWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVP------ARAAGFGFALLVAFVVW-LSTKAVSRMTAIVLG 158 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCc------HHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999875321111 22444455554444443 245666677666555
Q ss_pred HHHHHHHhhhhccccccccc----ccC-cccccCCchhHhHhHhhhccccccchhhHHhhccc-cccchhHHHHHHHHHH
Q 013930 198 ASVITLGSIVWTGAFDGVGF----HQK-GTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKK-KHQFSYVLLVCFFLCT 271 (433)
Q Consensus 198 ~~~~~~~~~i~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~-p~~~~~~~~~~~~i~~ 271 (433)
..+..++..+.... .+.+. +.+ ....++..++.++|+.++||..|+++|++.+.+++ +||.+|++..+..+..
T Consensus 159 ~~i~~f~~~~~~l~-~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Ipl 237 (414)
T PRK10483 159 AKVITFFLTFGSLL-GHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMAL 237 (414)
T ss_pred HHHHHHHHHHHHHH-hhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 55544444333321 11211 111 11122345789999999999999999999999986 4899999999999999
Q ss_pred HHHHHHHhHHHhhcc-----------ccchh--HhhhcCCCCchhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcccCC
Q 013930 272 FIYASMAIFGYMMFG-----------SEVQS--QITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQY 338 (433)
Q Consensus 272 i~y~~~~~~gy~~fg-----------~~~~~--~~l~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~ 338 (433)
++|++.-......-+ ++.+. ..+.+..+++....+..++..+.+.+||-=.....+|.+++.++.++
T Consensus 238 v~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~ 317 (414)
T PRK10483 238 ALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDD 317 (414)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999986555444333 21111 11122233344445667777778889998888999999999986554
Q ss_pred CCCCceehhhHHHHHHHHHHHhhccc-hHHHHHHHhhhhhhhhhhhhhhHHHHHHhcccccc----hhHHHHHHHHHHHH
Q 013930 339 SKRPYSLLISTPLVISTVIVALVVPF-FGYLMTLVGAFLSVTASVILPCLCYLKISGAYRRY----GIEMIAILGIVSIG 413 (433)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~ia~~~~~-~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~~~~~----~~~~~~~~~~~~~g 413 (433)
+ +..|........+++.++|...|+ |-..++..|.. ..++.-++|+++.++.||+..+. ..-+.....++.+|
T Consensus 318 ~-~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~~~~g 395 (414)
T PRK10483 318 S-AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIVLILLFG 395 (414)
T ss_pred c-cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecCCHHHHHHHHHHH
Confidence 3 345666677888999999999997 89999999976 55777899999999999762121 12234445556666
Q ss_pred HHHHhH
Q 013930 414 FIVAAI 419 (433)
Q Consensus 414 ~~~~~~ 419 (433)
+...+.
T Consensus 396 ~~~i~~ 401 (414)
T PRK10483 396 VGNALV 401 (414)
T ss_pred HHHHHH
Confidence 655443
No 12
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.95 E-value=1.3e-24 Score=207.20 Aligned_cols=368 Identities=13% Similarity=0.138 Sum_probs=268.3
Q ss_pred CCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCccch
Q 013930 42 TKTSVFKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGR 120 (433)
Q Consensus 42 ~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~ 120 (433)
+|.+.+.+.+.+.+++||+|+|++|.+-++.|+. +.+++++.+....+|+.++.|+..+.++..++..++|+.+||+++
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~ 86 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWN 86 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHH
Confidence 3448888999999999999999999999999999 999999999999999999999988888889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCC-cccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHHH
Q 013930 121 LIVSVFMNIELYLVATGFLILEGDNLENLFPNT-AIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLAS 199 (433)
Q Consensus 121 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 199 (433)
.+..+.+.+..+..+.+|+...++.+++.++.. ..+ . +++...++++++..++... +-+...+.+..-+...
T Consensus 87 ~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~-----i-~~~~~~llF~~~~~~~v~~-gt~~vd~~nr~l~~~~ 159 (415)
T PRK09664 87 IISGITVAFVLYILTYAYISANGAIISETISMNLGYH-----A-NPRIVGICTAIFVASVLWI-SSLAASRITSLFLGLK 159 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCC-----C-cHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence 999999999999999999999999999998642 111 1 1223334455544444432 3466666666555444
Q ss_pred HHHHHhhhhcccccccccc---cCcccc----cCCchhHhHhHhhhccccccchhhHHhhcccc-ccchhHHHHHHHHHH
Q 013930 200 VITLGSIVWTGAFDGVGFH---QKGTLV----NWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSYVLLVCFFLCT 271 (433)
Q Consensus 200 ~~~~~~~i~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~i~~ 271 (433)
++.++..+.... ...+.+ +..... .+..++.++|++++||..|+++|++.+.+++. ||.+|++..+..+..
T Consensus 160 ii~f~~~~~~l~-~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpL 238 (415)
T PRK09664 160 IISFVIVFGSFF-FQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLAL 238 (415)
T ss_pred HHHHHHHHHHHh-hcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 444433332221 111111 111111 12347889999999999999999999999865 788999999999999
Q ss_pred HHHHHHHhHHHh-----------hccccchhHhh--hcCCCCchhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcccCC
Q 013930 272 FIYASMAIFGYM-----------MFGSEVQSQIT--LNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQY 338 (433)
Q Consensus 272 i~y~~~~~~gy~-----------~fg~~~~~~~l--~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~ 338 (433)
++|++.=.+... .-|++.++.+. ..-.+..+...+..++..+.+.+||-=.....+|.+.+.+..++
T Consensus 239 viY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~ 318 (415)
T PRK09664 239 VIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDN 318 (415)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999764332222 22323332111 11133445555677777778889998888999999999986543
Q ss_pred CCCCceehhhHHHHHHHHHHHhhccc-hHHHHHHHhhhhhhhhhhhhhhHHHHHHhcccccc----hhHHHHHHHHHHHH
Q 013930 339 SKRPYSLLISTPLVISTVIVALVVPF-FGYLMTLVGAFLSVTASVILPCLCYLKISGAYRRY----GIEMIAILGIVSIG 413 (433)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~ia~~~~~-~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~~~~~----~~~~~~~~~~~~~g 413 (433)
+ +..|.....+..+++.++|...|+ |-..++..|.. ...+.-++|+++.+|.||+.... +.-+......+.+|
T Consensus 319 ~-~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g 396 (415)
T PRK09664 319 S-HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFG 396 (415)
T ss_pred c-cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHH
Confidence 3 445666777889999999999997 99999999986 55788899999999999762111 23355566666677
Q ss_pred HHHHhH
Q 013930 414 FIVAAI 419 (433)
Q Consensus 414 ~~~~~~ 419 (433)
++..+.
T Consensus 397 ~~ii~~ 402 (415)
T PRK09664 397 ITVILC 402 (415)
T ss_pred HHHHHH
Confidence 665543
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.95 E-value=1e-24 Score=209.35 Aligned_cols=366 Identities=14% Similarity=0.121 Sum_probs=266.7
Q ss_pred chhHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCccchhHH
Q 013930 45 SVFKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRLIV 123 (433)
Q Consensus 45 s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~ 123 (433)
+...+.+.+.++++|+|+|+||.+.+..|.. +.+.+++.+.+..++++++.|+..++++..++.+++++.+||+++++.
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~ 83 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLT 83 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHH
Confidence 7789999999999999999999999999998 999999999989999999999877777778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHH
Q 013930 124 SVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVITL 203 (433)
Q Consensus 124 ~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 203 (433)
.+.+.+..+..+.+|....++.+.+.++..... ..+.+ ...+++.++..... ..+-+...+++..-+...++.+
T Consensus 84 ~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~----~i~~~-~~~l~F~~~~~~iv-~~g~~~v~~~n~~L~~~~ii~~ 157 (403)
T PRK15132 84 GFSMMFLMYALTAAYISGAGELLASSISDWTGI----SMSPT-AGVLLFTLVAGGVV-CVGTSSVDLFNRFLFSAKIIFL 157 (403)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC----CCChH-HHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888777542110 01112 23333333322222 2244556666555544444333
Q ss_pred HhhhhcccccccccccCc-ccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccchhHHHHHHHHHHHHHHHHHhHH
Q 013930 204 GSIVWTGAFDGVGFHQKG-TLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSYVLLVCFFLCTFIYASMAIFG 281 (433)
Q Consensus 204 ~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~i~~i~y~~~~~~g 281 (433)
+....... .+.+.+.-. .+.+...++.++|++.+||..|+++|++.+.+++. ||.+|++..+..+..++|++.-...
T Consensus 158 ~~~~~~l~-p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~ 236 (403)
T PRK15132 158 VVMLALMM-PHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLAT 236 (403)
T ss_pred HHHHHHHH-HhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222221 112111000 01122248899999999999999999999999865 8999999999999999999887776
Q ss_pred Hhhccccch----------hHhhh---cCCCCchhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcccCCCCCCceehhh
Q 013930 282 YMMFGSEVQ----------SQITL---NLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYSKRPYSLLIS 348 (433)
Q Consensus 282 y~~fg~~~~----------~~~l~---~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (433)
...-+.+.- ++.+. +..+.++...+...+..+...+||-=.....+|.+.+.+.++++ +..|....
T Consensus 237 lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~-~~~r~~~~ 315 (403)
T PRK15132 237 LGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT-VGGRLQTG 315 (403)
T ss_pred HhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc-ccCCchhe
Confidence 665543321 11222 22344555566777777788899988889999999998865433 34477777
Q ss_pred HHHHHHHHHHHhhccc-hHHHHHHHhhhhhhhhhhhhhhHHHHHHhccc-c-cc--hhHHHHHHHHHHHHHHHHhH
Q 013930 349 TPLVISTVIVALVVPF-FGYLMTLVGAFLSVTASVILPCLCYLKISGAY-R-RY--GIEMIAILGIVSIGFIVAAI 419 (433)
Q Consensus 349 ~~~~~~~~~ia~~~~~-~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~~-~-~~--~~~~~~~~~~~~~g~~~~~~ 419 (433)
.+..++++++|...|+ +...+++.|.. ...+.+++|+++.+|.|+++ . +. ...+..++++..+|++..+.
T Consensus 316 ~l~flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~ 390 (403)
T PRK15132 316 LITFLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGI 390 (403)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHH
Confidence 8889999999999987 88899999865 67899999999999998654 1 11 12466677777777776643
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.89 E-value=2.6e-20 Score=177.84 Aligned_cols=368 Identities=14% Similarity=0.145 Sum_probs=256.4
Q ss_pred hHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhC-CCCCCHHHHHHHhcCccchhHHH
Q 013930 47 FKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVD-SNIRSYPDIGDRAFGQKGRLIVS 124 (433)
Q Consensus 47 ~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~-~~~~~y~~l~~~~~G~~~~~~~~ 124 (433)
..-+..+.++.+|+|+|+||-..+..|.. .+++++++..++++++..+.|...+. ++..++.+++++.+||+++.+..
T Consensus 22 ~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ 101 (443)
T PRK13629 22 TTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVIT 101 (443)
T ss_pred chHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHH
Confidence 34458999999999999999999999987 99999999999999999999986665 67789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHH
Q 013930 125 VFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVITLG 204 (433)
Q Consensus 125 ~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~ 204 (433)
+.+.+..+..+.+|...+.+.+++++.++-+ .. .. ++....+++.++..... ..+-+...+++..-+...+..++
T Consensus 102 ilYff~ly~ll~aY~~~itn~l~sfl~~ql~-~~--~~-~r~l~slifv~~l~~iv-~~G~~~v~kv~~~Lv~~~i~~l~ 176 (443)
T PRK13629 102 FLYFFAICPLLWIYGVTITNTFMTFWENQLG-FA--PL-NRGFVALFLLLLMAFVI-WFGKDLMVKVMSYLVWPFIASLV 176 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cC--Cc-cHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887544321 00 01 13344444444333333 33446666666655555554444
Q ss_pred hhhhcccccccc---cc-cCc---ccc-c---CCchhHhHhHhhhccccccchhhHHhh----cc-----c--cccchhH
Q 013930 205 SIVWTGAFDGVG---FH-QKG---TLV-N---WKGIPSSISLYAFCYCAHPVFPTLYTS----MK-----K--KHQFSYV 262 (433)
Q Consensus 205 ~~i~~~~~~~~~---~~-~~~---~~~-~---~~~~~~~~~~~~faf~~~~~i~~i~~~----m~-----~--p~~~~~~ 262 (433)
......+-+ ++ .. .+. +.. + ...++.++|+++|||..|+++|++... .+ | +||.+|+
T Consensus 177 ~l~~~LiP~-w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~ri 255 (443)
T PRK13629 177 LISLSLIPY-WNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQI 255 (443)
T ss_pred HHHHHHHHH-cCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHH
Confidence 443332211 11 11 110 000 1 123788999999999999999999998 53 3 4678899
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhccccchh-------Hhh---hc-CCC---C-----chhHHHHHHHHHHHHhhhhhhhh
Q 013930 263 LLVCFFLCTFIYASMAIFGYMMFGSEVQS-------QIT---LN-LPT---S-----KLSSRLAIYTTLVNPIAKYALMV 323 (433)
Q Consensus 263 ~~~~~~i~~i~y~~~~~~gy~~fg~~~~~-------~~l---~~-~~~---~-----~~~~~i~~~~~~~~~~~s~p~~~ 323 (433)
+..+..+..++|+..-+.+-..-+++.-. +++ .| +++ . +....+..++..+.+.+||-=..
T Consensus 256 i~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~ 335 (443)
T PRK13629 256 ISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHY 335 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888877776643311 111 11 222 1 33444556666667788888888
Q ss_pred hhHHHHHHHHccc----C-CCC---CCceehhhHHHHHHHHHHHhhccchHHHHHHHhhhhhhhhhhhhhhHHHHHHhcc
Q 013930 324 TPIVNSIKMRAST----Q-YSK---RPYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGA 395 (433)
Q Consensus 324 ~~~~~~~~~~~~~----~-~~~---~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~ 395 (433)
...+|.++..+.+ . +++ +..+.....++.+.++.++..-|+.-.+++-.|+-...++.|++|...-.|...-
T Consensus 336 LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l 415 (443)
T PRK13629 336 LGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSL 415 (443)
T ss_pred HHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHH
Confidence 8899998887731 1 111 1124555667777888888888999999997777777789999999888876544
Q ss_pred cccchhHHHHHHHHHHHHHHHHhHHHH
Q 013930 396 YRRYGIEMIAILGIVSIGFIVAAIGTY 422 (433)
Q Consensus 396 ~~~~~~~~~~~~~~~~~g~~~~~~g~~ 422 (433)
+ +.+ .+..|+++.+.|++......|
T Consensus 416 ~-~yr-~~~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 416 A-KYR-GRLDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred H-HhC-CCchhHHHHHHHHHHHHHHHH
Confidence 3 222 233578888888776544433
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.88 E-value=7.3e-21 Score=183.32 Aligned_cols=361 Identities=12% Similarity=0.117 Sum_probs=249.7
Q ss_pred hHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCC-CCCCHHHHHHHhcCccchhHHH
Q 013930 47 FKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDS-NIRSYPDIGDRAFGQKGRLIVS 124 (433)
Q Consensus 47 ~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~-~~~~y~~l~~~~~G~~~~~~~~ 124 (433)
..-++.+.++++|+|+|.+|...++.||. .++..++...+.+++...+.|.....+ +..++.|++++.+||+++.+..
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~ 85 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILIT 85 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHH
Confidence 45678899999999999999999999998 777777777888888888888744433 4799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHH
Q 013930 125 VFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVITLG 204 (433)
Q Consensus 125 ~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~ 204 (433)
+.++++.+..+.+|....++.+.+++....... .+ .+....+..++++......+.+.+.+++.+.+...+..++
T Consensus 86 ~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~----~p-~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~ 160 (397)
T TIGR00814 86 LLYFFAIYPILLIYSVAITNDSASFLVNQLGTA----PP-LRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILV 160 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----Cc-HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888875432110 01 1222222222332233345778888888777655554444
Q ss_pred hhhhccccc-ccc-cc-cCcccccCCchhHhHhHhhhccccccchhhHH----hhcc--c--cccchhHHHHHHHHHHHH
Q 013930 205 SIVWTGAFD-GVG-FH-QKGTLVNWKGIPSSISLYAFCYCAHPVFPTLY----TSMK--K--KHQFSYVLLVCFFLCTFI 273 (433)
Q Consensus 205 ~~i~~~~~~-~~~-~~-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~----~~m~--~--p~~~~~~~~~~~~i~~i~ 273 (433)
.+.....-+ +.+ .. .+.....+.++..+++..++||.+|+.++++. +|.+ | +||.+|+...+..+..++
T Consensus 161 ~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~ 240 (397)
T TIGR00814 161 LLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVAT 240 (397)
T ss_pred HHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 443332211 111 11 11111234578999999999999999999998 3343 2 357889999999999999
Q ss_pred HHHHHhHHHhhccccchhH-------hhh---cCCCCchhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcc----cCCC
Q 013930 274 YASMAIFGYMMFGSEVQSQ-------ITL---NLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRAS----TQYS 339 (433)
Q Consensus 274 y~~~~~~gy~~fg~~~~~~-------~l~---~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~----~~~~ 339 (433)
|+..-+.+....+++.-.. .+. |..+.++...+...+..+...+|+--.....+|.+++.+. .+++
T Consensus 241 y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~ 320 (397)
T TIGR00814 241 VMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGK 320 (397)
T ss_pred HHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Confidence 9999888888877544221 111 2223345555666666778888888888899999998772 1111
Q ss_pred C---CCceehhhHHHHHHHHHHHhhccchHHHHHHHhhhhhhhhhhhhhhHHHHHHhcccccchhHHHHHHHHHHHHH
Q 013930 340 K---RPYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGAYRRYGIEMIAILGIVSIGF 414 (433)
Q Consensus 340 ~---~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~~~~~~~~~~~~~~~~~~g~ 414 (433)
+ +..+.....+..+.++.++..-|+.-.+++-.|+-...++.|++|...-.|...-+ +.+ .+..++++.+.|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~-~~~-~~~~~~fv~~~g~ 396 (397)
T TIGR00814 321 KINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALK-KYR-GRISNVFVTVIGL 396 (397)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHH-HhC-CCcchheeEeeec
Confidence 1 11234555666778888888889999999966666667899999998888765433 111 1234666555553
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.81 E-value=1.1e-16 Score=158.90 Aligned_cols=238 Identities=15% Similarity=0.163 Sum_probs=164.8
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCcc
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQK 118 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~ 118 (433)
+++|+.+.++.+...+++++|+|++.+|..+++.|..+++..++.++........+.|...+.|+........++.+||+
T Consensus 3 ~~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~ 82 (438)
T PRK10655 3 AKSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKS 82 (438)
T ss_pred CccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcc
Confidence 35778999999999999999999999999888888778888888899989889999998888888888899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHH-HHHhhcccccCCCchHHHHHHHHH
Q 013930 119 GRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIA-LIILPTVWLDNLSLLSYVSASGVL 197 (433)
Q Consensus 119 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~pl~~~~~l~~l~~~s~~~~~ 197 (433)
.+++..+..++........+.....+++..+++.... ....+.+... +...-..-.++.+...+++.+...
T Consensus 83 ~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~--------~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~ 154 (438)
T PRK10655 83 GNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLS--------PVQICLATIGVLWLCTVANFGGARITGQISSVTVW 154 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--------hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 9999999887776666666555566777766653211 1111211111 111111113455556665555444
Q ss_pred HHHHHHHhhhhccc--ccccccccCccccc---CCchhHhHhHhhhccccccchhhHHhhcccc-ccchhHHHHHHHHHH
Q 013930 198 ASVITLGSIVWTGA--FDGVGFHQKGTLVN---WKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSYVLLVCFFLCT 271 (433)
Q Consensus 198 ~~~~~~~~~i~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~i~~ 271 (433)
..+..++.++..+. .+..+..+...+.+ +.++..++....|+|.|.+.+..+.+|+||| |+.+|++..+..++.
T Consensus 155 ~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~ 234 (438)
T PRK10655 155 GVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAA 234 (438)
T ss_pred HHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHH
Confidence 33332222222111 11111111101111 2356677888999999999999999999999 689999999999999
Q ss_pred HHHHHHHhHHHhh
Q 013930 272 FIYASMAIFGYMM 284 (433)
Q Consensus 272 i~y~~~~~~gy~~ 284 (433)
++|++........
T Consensus 235 ~~Y~l~~~~~~~~ 247 (438)
T PRK10655 235 VIYIVSTNVIAGI 247 (438)
T ss_pred HHHHHHHHHHHhC
Confidence 9999877655433
No 17
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.79 E-value=6.8e-16 Score=152.72 Aligned_cols=240 Identities=14% Similarity=0.091 Sum_probs=167.8
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCcc
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQK 118 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~ 118 (433)
+++|+.+.++.+...+++++|+|++.+|...++.|...++..++.++..........|...+.|......+.+++ +|++
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~ 80 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPA 80 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcH
Confidence 467899999999999999999999999999988887677777777888888889999998888888888888889 8999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHH
Q 013930 119 GRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLA 198 (433)
Q Consensus 119 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 198 (433)
.+++..+..+........++.....+++..+++....+. ......+..+...-+.-.++.|....++.+..+.
T Consensus 81 ~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~-------~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~ 153 (435)
T PRK10435 81 FGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPI-------PAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVL 153 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999987765555555666666677777766432110 0111111111111122245556666666555544
Q ss_pred HHHHHHhhhhccccc-ccc-c--c-cCcccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccchhHHHHHHHHHHH
Q 013930 199 SVITLGSIVWTGAFD-GVG-F--H-QKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSYVLLVCFFLCTF 272 (433)
Q Consensus 199 ~~~~~~~~i~~~~~~-~~~-~--~-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~i~~i 272 (433)
.++.++..+..+... +.+ . + .+..+.++.++..++....|+|.|.+.+....+|+||| |+.+|++..+..++.+
T Consensus 154 ~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~i 233 (435)
T PRK10435 154 VLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGI 233 (435)
T ss_pred HHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHH
Confidence 433332222221111 110 0 0 01112234578889999999999999999999999999 6899999999999999
Q ss_pred HHHHHHhHHHhhcc
Q 013930 273 IYASMAIFGYMMFG 286 (433)
Q Consensus 273 ~y~~~~~~gy~~fg 286 (433)
+|++..........
T Consensus 234 lYil~~~~~~~~~p 247 (435)
T PRK10435 234 IYIAATQVISGMFP 247 (435)
T ss_pred HHHHHHHHHHhcCC
Confidence 99998877655443
No 18
>PRK10249 phenylalanine transporter; Provisional
Probab=99.76 E-value=8.9e-16 Score=152.73 Aligned_cols=235 Identities=12% Similarity=0.131 Sum_probs=162.8
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhchhHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCc
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGILSTPYA-LASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQ 117 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~a-~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 117 (433)
+.+|+.+.++..+..++.++|+|++..|.. .+++|...++..++.+++....+..+.|...+.|......+.+++.+|+
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~ 97 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGP 97 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCh
Confidence 567899999999999999999999999965 5567766777788889999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHH
Q 013930 118 KGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVL 197 (433)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 197 (433)
..+++..+..++.............+.++..+.+..+ ...+.+.+..+...+. .++.+..+++.....+
T Consensus 98 ~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~l~~~lN-~~gv~~~~~i~~~~~~ 166 (458)
T PRK10249 98 FAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVP----------TWIWAAAFFIIINAVN-LVNVRLYGETEFWFAL 166 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCc----------HHHHHHHHHHHHHHHH-HhcchhhhhHHHHHHH
Confidence 9999999998887766666666667777776654321 1122222222222222 3455555554433322
Q ss_pred HHH---HHHHhh-hh--ccccccc--ccc----cC-cccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccchhHH
Q 013930 198 ASV---ITLGSI-VW--TGAFDGV--GFH----QK-GTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSYVL 263 (433)
Q Consensus 198 ~~~---~~~~~~-i~--~~~~~~~--~~~----~~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~ 263 (433)
..+ +.++.+ ++ ....... +.+ .+ ..+.++.++..++....|+|.|.+.+....+|+||| |+.+|++
T Consensus 167 ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai 246 (458)
T PRK10249 167 IKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAV 246 (458)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHH
Confidence 211 111111 11 1110000 000 00 012345567889999999999999999999999999 5789999
Q ss_pred HHHHHHHHHHHHHHHhHHHhh
Q 013930 264 LVCFFLCTFIYASMAIFGYMM 284 (433)
Q Consensus 264 ~~~~~i~~i~y~~~~~~gy~~ 284 (433)
..+...+.++|+.........
T Consensus 247 ~~~~~~~~~~y~~~~~~~~~~ 267 (458)
T PRK10249 247 NQVVYRILLFYIGSLVVLLAL 267 (458)
T ss_pred HHHHHHHHHHHHHHHHHHhee
Confidence 999999999998755544333
No 19
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.76 E-value=2.4e-15 Score=149.42 Aligned_cols=240 Identities=13% Similarity=0.168 Sum_probs=160.9
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCcc
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQK 118 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~ 118 (433)
+++|+.+.++++...+++++|+|++.+|...++.|...+...++.++........+.|..+..|+.....+.+++.+||+
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~~ 84 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPF 84 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCch
Confidence 46789999999999999999999999999888777555555666677777778888998888888888888899999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHH
Q 013930 119 GRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLA 198 (433)
Q Consensus 119 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 198 (433)
.++++.+..++.......+......++...+.+....+ + ......+..+..+-..-.+..|...+++.+....
T Consensus 85 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~ 157 (445)
T PRK10644 85 LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDP---L----VLTITCVVVLWIFVLLNIVGPKMITRVQAVATVL 157 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc---H----HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 99999988887665555555555556666655432211 0 0011111111111111134556666666655444
Q ss_pred HHHHHHhhhhccc--ccccccccC---cccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccchhHHHHHHHHHHH
Q 013930 199 SVITLGSIVWTGA--FDGVGFHQK---GTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSYVLLVCFFLCTF 272 (433)
Q Consensus 199 ~~~~~~~~i~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~i~~i 272 (433)
.++.++.++.... .+....... ....++.++..++....|+|.|.+....+.+|+||| |+.+|++..+..++.+
T Consensus 158 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v 237 (445)
T PRK10644 158 ALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAV 237 (445)
T ss_pred HHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHH
Confidence 3332222222111 111111100 001123455667889999999999999999999999 6799999999999999
Q ss_pred HHHHHHhHHHhhc
Q 013930 273 IYASMAIFGYMMF 285 (433)
Q Consensus 273 ~y~~~~~~gy~~f 285 (433)
+|++.........
T Consensus 238 ~Y~l~~~~~~~~~ 250 (445)
T PRK10644 238 CYVLSSTAIMGMI 250 (445)
T ss_pred HHHHHHHHHHhCC
Confidence 9999887754433
No 20
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.76 E-value=6.3e-16 Score=149.36 Aligned_cols=337 Identities=11% Similarity=0.166 Sum_probs=222.1
Q ss_pred CCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCccch
Q 013930 42 TKTSVFKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGR 120 (433)
Q Consensus 42 ~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~ 120 (433)
+|.|.+|.++.++++++|+|++.+|...++.+-. +++..++.++........+.+..+++|+ .+..|+.++.+||+.+
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~-~~~~~~~~~~~Gk~~g 79 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE-KNFSEILSKYLGKILG 79 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHhhHHHH
Confidence 3689999999999999999999999987764444 8888899999999999999999888865 5899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHHHH
Q 013930 121 LIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASV 200 (433)
Q Consensus 121 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 200 (433)
++..+....+............++.++.......+ . ....+..++.......++.+...+++.+.....+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp---------~-~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i 149 (359)
T TIGR00912 80 RLLSILFILYFFLIAAYLIRIFADFIKTYLLPRTP---------I-IVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFL 149 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---------H-HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99999988888888777777888887765422111 1 2222222222223335688888888887766555
Q ss_pred HHH-Hhhhhccccc-ccccccCcccccCCchhHhHh-HhhhccccccchhhHHhhccccccchhHHHHHHHHHHHHHHHH
Q 013930 201 ITL-GSIVWTGAFD-GVGFHQKGTLVNWKGIPSSIS-LYAFCYCAHPVFPTLYTSMKKKHQFSYVLLVCFFLCTFIYASM 277 (433)
Q Consensus 201 ~~~-~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~i~~i~y~~~ 277 (433)
... +.+....... +.+.-.|..+.++.+...+.. ...++|.+.+.+....+++|||||.+|+...+..++.++|...
T Consensus 150 ~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly~~~ 229 (359)
T TIGR00912 150 ILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLYILT 229 (359)
T ss_pred HHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHH
Confidence 442 2222222111 122222333445666666554 8889999999999999999999999999999999999999999
Q ss_pred HhHHHhhccccchhHhh-------hcCCCCchhH---HHHHHHHHHHHhhhhhhhhhhHHHHHHHHcccCCCCCCceehh
Q 013930 278 AIFGYMMFGSEVQSQIT-------LNLPTSKLSS---RLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYSKRPYSLLI 347 (433)
Q Consensus 278 ~~~gy~~fg~~~~~~~l-------~~~~~~~~~~---~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (433)
.......+|.+..++.. ....-.+... .+...........+.....+.....+++.++.++.+ ....
T Consensus 230 ~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 306 (359)
T TIGR00912 230 TFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKYS---ILIL 306 (359)
T ss_pred HHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc---hhHH
Confidence 99999999865443211 1111111211 122233444555666677777788888877444321 1222
Q ss_pred hHHHHHHHHHHHhhccc-hHH---HHHHHhhhhhhhhhhhhhhHHHHHHhccc
Q 013930 348 STPLVISTVIVALVVPF-FGY---LMTLVGAFLSVTASVILPCLCYLKISGAY 396 (433)
Q Consensus 348 ~~~~~~~~~~ia~~~~~-~~~---v~~l~G~~~~~~~~~ilP~~~~l~~~~~~ 396 (433)
..+. ..+.++.. |+ ... .....+ ..+....+++|.++.+...-||
T Consensus 307 ~~~~--~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~i~~ik~ 355 (359)
T TIGR00912 307 PVLM--VIFSISFF-PDSSNQLFDYLEFLP-IIAIVFFLLLPLILFIIVKIKN 355 (359)
T ss_pred HHHH--HHHHHHHc-cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 2222 23333333 43 322 222222 2334566788998877665443
No 21
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.76 E-value=1.9e-15 Score=151.25 Aligned_cols=241 Identities=12% Similarity=0.125 Sum_probs=166.3
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhchhHHHHHh-hhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCC-CCCHHHHHHHhc
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGILSTPYALAS-GGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSN-IRSYPDIGDRAF 115 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~-~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~-~~~y~~l~~~~~ 115 (433)
+++|+.|.++++...+++++|+|++.+|....+ .|.. .++..++.++........+.|..++.|+ .....+..++.+
T Consensus 4 ~~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 4 AKSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred ccCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 457889999999999999999999999998775 4443 4566777788888888889999888888 788888999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHH-HHHHHHHhhcccccCCCchHHHHHH
Q 013930 116 GQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFV-VIIALIILPTVWLDNLSLLSYVSAS 194 (433)
Q Consensus 116 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~pl~~~~~l~~l~~~s~~ 194 (433)
||+.+++..+..++........+.....+++..+++..... . ...... .+...+..-..-.++.+...+++..
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~-~-----~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~ 157 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG-N-----PVPSILGASVLLWVFTFLVLRGVRQAAFINTI 157 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-C-----cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 99999999999887766666777777777777777632211 0 011111 1111111122224567777777666
Q ss_pred HHHHHHHHHHhhhhccc--cccccc--c--cC---cccccCCchhHhHhHhhhccccccchhhHHhhccccccchhHHHH
Q 013930 195 GVLASVITLGSIVWTGA--FDGVGF--H--QK---GTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLLV 265 (433)
Q Consensus 195 ~~~~~~~~~~~~i~~~~--~~~~~~--~--~~---~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~ 265 (433)
.....+..++.++..+. .+..+. + +. ....++.++..++....|+|.|.+....+.+|+||+|+.+|++..
T Consensus 158 ~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPrai~~ 237 (473)
T TIGR00905 158 TTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKATVL 237 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchHHHHH
Confidence 55443333222222111 111111 1 11 001123456678888999999999999999999997789999999
Q ss_pred HHHHHHHHHHHHHhHHHhhc
Q 013930 266 CFFLCTFIYASMAIFGYMMF 285 (433)
Q Consensus 266 ~~~i~~i~y~~~~~~gy~~f 285 (433)
+..++.++|++.........
T Consensus 238 ~~~i~~~~Yil~~~~~~~~~ 257 (473)
T TIGR00905 238 GTLGALVIYILITLLSLGVL 257 (473)
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 99999999998877655443
No 22
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.75 E-value=1.6e-15 Score=151.03 Aligned_cols=237 Identities=13% Similarity=0.131 Sum_probs=167.2
Q ss_pred CCCCCCCCchhHHHHHHHHhhhhhhhchhH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhc
Q 013930 37 DDSRTTKTSVFKTCFNGVNALSGVGILSTP-YALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAF 115 (433)
Q Consensus 37 ~~~~~~~~s~~~~~~~li~~~iG~GiL~lP-~a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~ 115 (433)
+.+.+|+.+.++..+..+++++|+|++.+| .+.++.|..+++..++.+++....+..+.|..++.|......+.+++.+
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~ 86 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAI 86 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 335788999999999999999999999999 5567788768888888999999999999999988888899999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHH
Q 013930 116 GQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASG 195 (433)
Q Consensus 116 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 195 (433)
||+.+++..+..++.....+.+.....+++++.+.+..+ .+.+.+.+.++...+. .+..+....++...
T Consensus 87 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~~~~~~~~~~~~n-~~gv~~~~~~~~~~ 155 (452)
T TIGR01773 87 GRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDIP----------LWLFSLILTIVLTLTN-LYSVKSYGEFEFWF 155 (452)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCc----------HHHHHHHHHHHHHHHH-HHhcchhhHHHHHH
Confidence 999999999999888877787787888888887765321 1122222222222222 34555555555443
Q ss_pred HHHHHHHHHhh----hh--cccccccc---c---cc-Cc-ccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccch
Q 013930 196 VLASVITLGSI----VW--TGAFDGVG---F---HQ-KG-TLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFS 260 (433)
Q Consensus 196 ~~~~~~~~~~~----i~--~~~~~~~~---~---~~-~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~ 260 (433)
.+..+..++.+ ++ .......+ . .+ .. .+.++.++..++....|+|.|.+.+..+.+|+||| |+.+
T Consensus 156 ~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iP 235 (452)
T TIGR01773 156 ALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSIT 235 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHH
Confidence 33222211111 11 11000000 0 00 01 12233468889999999999999999999999999 5799
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHhh
Q 013930 261 YVLLVCFFLCTFIYASMAIFGYMM 284 (433)
Q Consensus 261 ~~~~~~~~i~~i~y~~~~~~gy~~ 284 (433)
|++..+...+.++|++........
T Consensus 236 rAi~~~~~~~~~~y~l~~~~~~~~ 259 (452)
T TIGR01773 236 RATNSVIWRIIVFYLGSIFIVVAL 259 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHeeE
Confidence 999888888899998865544433
No 23
>PRK15049 L-asparagine permease; Provisional
Probab=99.75 E-value=1.6e-15 Score=152.09 Aligned_cols=346 Identities=10% Similarity=0.082 Sum_probs=196.9
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhchhHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCc
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGILSTPY-ALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQ 117 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~-a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 117 (433)
+.+|+++.++..+..++.+||+|++..|. +.+++|..+++..++.+++....+..+.|.....|......+.+++.+|+
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~ 104 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGE 104 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCc
Confidence 46788999999999999999999999986 56678876777888888999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHH
Q 013930 118 KGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVL 197 (433)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 197 (433)
+.++++.+..++.............+.+...+ +... .. ..+.+.+.+.++...+. .++.|....++.....
T Consensus 105 ~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~-~~------~~~~~~~~~~~l~~~iN-~~gvk~~~~i~~~~~~ 175 (499)
T PRK15049 105 KAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAFG-GV------PQWVFALAALTIVGTMN-MIGVKWFAEMEFWFAL 175 (499)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC-CC------cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 99999999888765544444444444444322 1111 00 11122222222222222 3455555555544332
Q ss_pred HHHHHHHhhh---hccccccccc--cc-------C-c--ccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccchh
Q 013930 198 ASVITLGSIV---WTGAFDGVGF--HQ-------K-G--TLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSY 261 (433)
Q Consensus 198 ~~~~~~~~~i---~~~~~~~~~~--~~-------~-~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~ 261 (433)
..+..++.++ ......+.+. +. + . .+.++.++..++...+|+|.|.+.+....+|.||| |+.+|
T Consensus 176 iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPr 255 (499)
T PRK15049 176 IKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPK 255 (499)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHH
Confidence 2221111111 1110111100 00 0 0 01112234455667999999999999999999999 56999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhccccch----hHhhh--cCCCCchhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--
Q 013930 262 VLLVCFFLCTFIYASMAIFGYMMFGSEVQ----SQITL--NLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMR-- 333 (433)
Q Consensus 262 ~~~~~~~i~~i~y~~~~~~gy~~fg~~~~----~~~l~--~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~-- 333 (433)
++..+...+.++|+............+.. ++... +....+....+.....++..+.+..-..+...+.+...
T Consensus 256 Ai~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ar 335 (499)
T PRK15049 256 AINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAM 335 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998876655444332111 11111 11111222223333333333333322233332222221
Q ss_pred ---cc----cCC-CCCCceeh-hhHHHHHHHHHHHhhcc--chHHHHHHHhhhhhhhhhhhhhhHHHHHHhcc
Q 013930 334 ---AS----TQY-SKRPYSLL-ISTPLVISTVIVALVVP--FFGYLMTLVGAFLSVTASVILPCLCYLKISGA 395 (433)
Q Consensus 334 ---~~----~~~-~~~~~~~~-~~~~~~~~~~~ia~~~~--~~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~ 395 (433)
++ +.+ ++.+.+.+ ...++.++..++....| .++.++++.+ .+..+.|++|++.+++.||+
T Consensus 336 dg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 336 GGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred cCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 11 111 12222222 22222222222222223 2666677654 45578999999999988764
No 24
>TIGR00909 2A0306 amino acid transporter.
Probab=99.75 E-value=2e-15 Score=149.57 Aligned_cols=243 Identities=14% Similarity=0.198 Sum_probs=173.4
Q ss_pred CCCCchhHHHHHHHHhhhhhhhchhHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCccc
Q 013930 41 TTKTSVFKTCFNGVNALSGVGILSTPYALA-SGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKG 119 (433)
Q Consensus 41 ~~~~s~~~~~~~li~~~iG~GiL~lP~a~~-~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 119 (433)
+|+.+.++.+...++.++|+|++.+|.... ..|...++..++.++........+.|..++.|+.....+..++.+||+.
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~ 81 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGELT 81 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcHH
Confidence 578999999999999999999999997655 4555566667777888888888999998888887888899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccccccccc----CCc-hhHHHHHHHHHhhcccccCCCchHHHHHH
Q 013930 120 RLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTL----GGK-QCFVVIIALIILPTVWLDNLSLLSYVSAS 194 (433)
Q Consensus 120 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~----~~~-~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 194 (433)
+++..+..++.....+..+....++++..+++....+.+.+.. +.. ..+..+...+..-....++.+...+++.+
T Consensus 82 g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~v 161 (429)
T TIGR00909 82 AFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDI 161 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 9999999988888888888888889888877632111111100 001 01111222222222225677888887777
Q ss_pred HHHHHHHHHHhhhhccccc-c-cccccCcccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccchhHHHHHHHHHH
Q 013930 195 GVLASVITLGSIVWTGAFD-G-VGFHQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSYVLLVCFFLCT 271 (433)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~i~~ 271 (433)
.....+..++.++..+... + .+.. +..+.++.++..++....|+|.|.+....+.+|+||| |+.+|++..+..++.
T Consensus 162 ~~~~~i~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~ 240 (429)
T TIGR00909 162 LVVLKVAALLLFAALGAIHFASNNYT-PFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVT 240 (429)
T ss_pred HHHHHHHHHHHhhhHHHhhCcHHhcC-CCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHH
Confidence 6665555443333222211 1 1111 1122344567889999999999999999999999999 678999999999999
Q ss_pred HHHHHHHhHHHhh
Q 013930 272 FIYASMAIFGYMM 284 (433)
Q Consensus 272 i~y~~~~~~gy~~ 284 (433)
++|++........
T Consensus 241 v~Yil~~~~~~~~ 253 (429)
T TIGR00909 241 LLYVLVAAVILGA 253 (429)
T ss_pred HHHHHHHHHHhcC
Confidence 9999987665543
No 25
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.75 E-value=3.7e-15 Score=148.89 Aligned_cols=239 Identities=13% Similarity=0.141 Sum_probs=163.3
Q ss_pred CCCchhHHHHHHHHhhhhhhhchhHHHHH-hhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCC-CHHHHHHHhcCcc
Q 013930 42 TKTSVFKTCFNGVNALSGVGILSTPYALA-SGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIR-SYPDIGDRAFGQK 118 (433)
Q Consensus 42 ~~~s~~~~~~~li~~~iG~GiL~lP~a~~-~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~-~y~~l~~~~~G~~ 118 (433)
|+.+.++.+...+++++|+|++.+|.... .+|.. .++..++.++.....+..+.|...+.|+.. ...+.+++.+||+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 57899999999999999999999998765 46655 556677888888888899999888887654 7888899999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHH-HHHHHHHhhcccccCCCchHHHHHHHHH
Q 013930 119 GRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFV-VIIALIILPTVWLDNLSLLSYVSASGVL 197 (433)
Q Consensus 119 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 197 (433)
.+++..+..++........+.......+..+++...... ....+. .+..+..+-..-.+..+...+++.+..+
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~ 154 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGN------NPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTI 154 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC------cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 999999998887666666777766677766665432110 011111 1111111222224566666666666554
Q ss_pred HHHHHHHhhhhccc--cccccccc----C-ccccc----CCchhHhHhHhhhccccccchhhHHhhccccccchhHHHHH
Q 013930 198 ASVITLGSIVWTGA--FDGVGFHQ----K-GTLVN----WKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLLVC 266 (433)
Q Consensus 198 ~~~~~~~~~i~~~~--~~~~~~~~----~-~~~~~----~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~ 266 (433)
..+..++.++..+. .+...... . .+... +.++..++....|+|.|.+....+.+|.||+|+.+|++..+
T Consensus 155 ~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ai~~~ 234 (468)
T TIGR03810 155 AKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATVIG 234 (468)
T ss_pred HHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHHHHHH
Confidence 44332222221111 11111110 0 00111 23455788899999999999999999999989999999999
Q ss_pred HHHHHHHHHHHHhHHHhhcc
Q 013930 267 FFLCTFIYASMAIFGYMMFG 286 (433)
Q Consensus 267 ~~i~~i~y~~~~~~gy~~fg 286 (433)
...+.++|.+..+..+...+
T Consensus 235 ~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 235 LIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHHHhCcC
Confidence 99999999998887765544
No 26
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.74 E-value=2.4e-15 Score=152.40 Aligned_cols=353 Identities=11% Similarity=0.066 Sum_probs=212.8
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhchhHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcC
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGILSTPYAL--ASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFG 116 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~--~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G 116 (433)
+.+|+.+.++.+...++.++|+|++.+|... ...|...++..++.++.+...+....|...+.|+..+.....++.+|
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G 104 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVG 104 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhC
Confidence 5688999999999999999999999999654 34776666677788888888999999998888888888888889999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCC----cccc---cccccCCchhHHHHHHHHHhhcccccCCCchH
Q 013930 117 QKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNT----AIEL---GGFTLGGKQCFVVIIALIILPTVWLDNLSLLS 189 (433)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~----~~~~---~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 189 (433)
+...+++.+..++.......+.....++++.+++... .... .............+..+++.-....++.|..+
T Consensus 105 ~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~ 184 (557)
T TIGR00906 105 ELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESA 184 (557)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchhHHH
Confidence 9999999998888777666666666677776655321 0000 00000011111111111222222356778888
Q ss_pred HHHHHHHHHHHHHHHhhhhccccc-cc-ccc-----c--CcccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccc
Q 013930 190 YVSASGVLASVITLGSIVWTGAFD-GV-GFH-----Q--KGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQF 259 (433)
Q Consensus 190 ~~s~~~~~~~~~~~~~~i~~~~~~-~~-~~~-----~--~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~ 259 (433)
+++.+.....+..++.++..+... +. ++. . +..+.++.++..+.....|+|.|.+.+....+|.||| |+.
T Consensus 185 ~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~i 264 (557)
T TIGR00906 185 WVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAI 264 (557)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccc
Confidence 877766655554444333333221 11 111 0 1113344568889999999999999999999999999 569
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHhhccccc---hhH---hhhcCCCCchhHHHHHHHHHHHHhhhhhhhhhhHHHHHHH-
Q 013930 260 SYVLLVCFFLCTFIYASMAIFGYMMFGSEV---QSQ---ITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKM- 332 (433)
Q Consensus 260 ~~~~~~~~~i~~i~y~~~~~~gy~~fg~~~---~~~---~l~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~- 332 (433)
+|++..+..+++++|.++...-...-..+. ++. ...... .++...+.....+.....+..-.++..-+.+..
T Consensus 265 P~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g-~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~am 343 (557)
T TIGR00906 265 PIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVG-WGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAM 343 (557)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998766544332211 111 111111 122222222333333333322222322222222
Q ss_pred ----Hcc----cCCCCCCceehhhHHHHHHHHHHHhhccchHHHHHHHhhhhhhhhhhhhhhHHHHHHhcc
Q 013930 333 ----RAS----TQYSKRPYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGA 395 (433)
Q Consensus 333 ----~~~----~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~ 395 (433)
.++ +.++++...........+++.+++... +++.+.++.. .+..+.|.+++...+.+|++
T Consensus 344 arDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~-~~~~l~~l~s--ig~ll~y~lv~~~~l~lR~~ 411 (557)
T TIGR00906 344 ARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLF-DLKALVDLLS--IGTLLAYSLVAACVLILRYQ 411 (557)
T ss_pred HcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHc-CHHHHHHHHH--HHHHHHHHHHHHHHHHhhcc
Confidence 111 111111222222233333334444433 4666666643 33468899998888877743
No 27
>PRK10746 putative transport protein YifK; Provisional
Probab=99.74 E-value=6.9e-15 Score=146.34 Aligned_cols=237 Identities=12% Similarity=0.122 Sum_probs=163.6
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhchhHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCc
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGILSTPY-ALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQ 117 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~-a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 117 (433)
+.+|+.+.++..+..++++||+|++..|. +.+.+|...++..++.+++....+..+.|.....|....+.+.+++.+|+
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~ 86 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSP 86 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCc
Confidence 46789999999999999999999999885 56678875566777788888889999999988889999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHH
Q 013930 118 KGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVL 197 (433)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 197 (433)
+.++++.+..++.............+.+++.+.+..+ ...+..+..++...+. .++.+....+......
T Consensus 87 ~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~----------~~~~~~~~~~~~~~lN-~~gv~~~~~~e~~~~~ 155 (461)
T PRK10746 87 FFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMA----------QWIPALIAVALVALAN-LAAVRLYGEIEFWFAM 155 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc----------hHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH
Confidence 9999999999888777777777778888877765422 1122222222222222 3344444444332221
Q ss_pred HH----HHHHHhh---hhcccccc-c--ccc---cCc--ccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccchh
Q 013930 198 AS----VITLGSI---VWTGAFDG-V--GFH---QKG--TLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSY 261 (433)
Q Consensus 198 ~~----~~~~~~~---i~~~~~~~-~--~~~---~~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~ 261 (433)
.. +..++.. ........ . ..+ ++. .+.++.++..++....|+|.|.+.+....+|.||| |+++|
T Consensus 156 ~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~ 235 (461)
T PRK10746 156 IKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRS 235 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHH
Confidence 11 1111111 11111100 0 011 011 12235567899999999999999999999999999 68999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcc
Q 013930 262 VLLVCFFLCTFIYASMAIFGYMMFG 286 (433)
Q Consensus 262 ~~~~~~~i~~i~y~~~~~~gy~~fg 286 (433)
++..+...+.++|............
T Consensus 236 Ai~~~~~~i~~~yv~~~~~~~~~~p 260 (461)
T PRK10746 236 AVGKVLWRILIFYVGAIFVIVTIFP 260 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHeeeeC
Confidence 9999999999999886555444433
No 28
>PRK11021 putative transporter; Provisional
Probab=99.74 E-value=1.6e-14 Score=141.97 Aligned_cols=229 Identities=15% Similarity=0.219 Sum_probs=156.3
Q ss_pred CchhHHHHHHHHhhhhhhhchhHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCccchhH
Q 013930 44 TSVFKTCFNGVNALSGVGILSTPYALA-SGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRLI 122 (433)
Q Consensus 44 ~s~~~~~~~li~~~iG~GiL~lP~a~~-~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 122 (433)
.+.++++...+++++|+|++.+|.... .+|...++..++.++........+.|..++.|+........++.+||+.+++
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRV 80 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHH
Confidence 367899999999999999999997654 5675577778888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHH
Q 013930 123 VSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVIT 202 (433)
Q Consensus 123 ~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 202 (433)
..+..+........+.......++..+++... + ......+...+..-+.-.++.|...+++....+..+..
T Consensus 81 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i 151 (410)
T PRK11021 81 TGWLFLSVIPVGLPAALQIAAGFGQALFGWSS-----W----QLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVAL 151 (410)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCC-----c----hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99987765444344444444556655554211 0 11111111111122222456666666655444332222
Q ss_pred HHhhhhcccccccccc-cCcccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccchhHHHHHHHHHHHHHHHHHhH
Q 013930 203 LGSIVWTGAFDGVGFH-QKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSYVLLVCFFLCTFIYASMAIF 280 (433)
Q Consensus 203 ~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~i~~i~y~~~~~~ 280 (433)
+.........+..+.. .+....++.++..++....|+|.|.+.+....+|+||| |+++|++..+..++.++|++....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 152 VVAIWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 2221111111111111 11123355678889999999999999999999999999 679999999999999999998765
Q ss_pred H
Q 013930 281 G 281 (433)
Q Consensus 281 g 281 (433)
-
T Consensus 232 ~ 232 (410)
T PRK11021 232 V 232 (410)
T ss_pred H
Confidence 3
No 29
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.73 E-value=8e-15 Score=146.62 Aligned_cols=237 Identities=9% Similarity=0.072 Sum_probs=157.3
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhchhHHH-HHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcC
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGILSTPYA-LASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFG 116 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~a-~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G 116 (433)
+.+|+.+.++.....++.++|+|++..|.. .+.+|.. .++..++.+++.......+.|...+.|+...+....++.+|
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g 90 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLG 90 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcC
Confidence 467889999999999999999999988865 5667865 66677788888888999999999999888999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHH
Q 013930 117 QKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGV 196 (433)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 196 (433)
++.+++..+..++.....+.......+..+..+.+..+ ...+.++..++...+. .++.|.....+....
T Consensus 91 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~~~~~~~~~~~in-~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 91 PATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQVP----------VWPWCLLFCALIFGLN-VVSTRFFAEGEFWFS 159 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCc----------HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence 99999999988877666665555555555544443211 1122222222222222 345555554443322
Q ss_pred HHHHHHHHhhhhc------c--ccccccc----c---cCcc-cccCCchhHhHhHhhhccccccchhhHHhhcccc-ccc
Q 013930 197 LASVITLGSIVWT------G--AFDGVGF----H---QKGT-LVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQF 259 (433)
Q Consensus 197 ~~~~~~~~~~i~~------~--~~~~~~~----~---~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~ 259 (433)
...+..++.++.. . ...+.+. + .+.+ +.+..++..++....|+|.|.+.+....+|+||| |++
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~i 239 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVI 239 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHH
Confidence 2211111111110 0 0000000 0 0000 1111246678888999999999999999999999 579
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHhhcc
Q 013930 260 SYVLLVCFFLCTFIYASMAIFGYMMFG 286 (433)
Q Consensus 260 ~~~~~~~~~i~~i~y~~~~~~gy~~fg 286 (433)
+|++..+..++.++|+...........
T Consensus 240 PrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 240 PVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 999999999999999988765544433
No 30
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.72 E-value=6.9e-15 Score=146.93 Aligned_cols=235 Identities=10% Similarity=0.138 Sum_probs=157.2
Q ss_pred CCCCCCCchhHHHHHHHHhhhhhhhchhHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcC
Q 013930 38 DSRTTKTSVFKTCFNGVNALSGVGILSTPY-ALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFG 116 (433)
Q Consensus 38 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP~-a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G 116 (433)
++.+|+.+.++.....++++||+|++..|. +.+++|...++..++.+++.......+.|.....+...++.+.+++.+|
T Consensus 16 ~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g 95 (469)
T PRK11049 16 QSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLG 95 (469)
T ss_pred hhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhC
Confidence 458889999999999999999999999885 6667887555666677777777777888877665666778899999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHH
Q 013930 117 QKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGV 196 (433)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 196 (433)
|..+++..+..++.......+.....+.++..+.+... .+.+.+++..+...+. ..+.+....++.+..
T Consensus 96 ~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~~----------~~~~~~~~~~~~~~iN-~~g~~~~~~i~~~~~ 164 (469)
T PRK11049 96 PWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDLS----------DWVASLAVVLLLLSLN-LATVKMFGEMEFWFA 164 (469)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence 99999999998877655555566667777766655321 1122222222222222 345555555554443
Q ss_pred HHHHHHHHhhhhccc------ccccc-----c----ccCc-ccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccc
Q 013930 197 LASVITLGSIVWTGA------FDGVG-----F----HQKG-TLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQF 259 (433)
Q Consensus 197 ~~~~~~~~~~i~~~~------~~~~~-----~----~~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~ 259 (433)
...+..++.+++.+. .+..+ . +... .+.++.++..++....|+|.|.+.+....+|+||| |++
T Consensus 165 ~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~i 244 (469)
T PRK11049 165 MIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSL 244 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHH
Confidence 332222222111111 10000 0 0001 12234468899999999999999999999999999 568
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHh
Q 013930 260 SYVLLVCFFLCTFIYASMAIFGYM 283 (433)
Q Consensus 260 ~~~~~~~~~i~~i~y~~~~~~gy~ 283 (433)
+|++..+...+.++|.+.......
T Consensus 245 Prai~~~~~~~~~~y~l~~~~~~~ 268 (469)
T PRK11049 245 PRAINSIPIRIIMFYVFALIVIMS 268 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHee
Confidence 999987777788888876665543
No 31
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.72 E-value=1.1e-15 Score=144.04 Aligned_cols=345 Identities=14% Similarity=0.178 Sum_probs=229.6
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhh-chhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCc
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGI-LSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQ 117 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~Gi-L~lP~a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 117 (433)
+.+|+++.++--+.-++..||+|. ++-..+.+.+|.--+...++.|++.+.-++.+.|...++|..+++.+.+++.+|+
T Consensus 10 ~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~ 89 (462)
T COG1113 10 GLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGP 89 (462)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcc
Confidence 467899999999999999999998 5777888999988788888999999999999999998889999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHH--HhhcccccCCCchHHHHHHH
Q 013930 118 KGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALI--ILPTVWLDNLSLLSYVSASG 195 (433)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pl~~~~~l~~l~~~s~~~ 195 (433)
+.+++..+.++......+.+-...++.+++.++|+.+ .+.+.+...++ ..-+...|.+.++.++-.+-
T Consensus 90 ~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP----------~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlI 159 (462)
T COG1113 90 WAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVP----------QWVFALAAVVLLLAVNLISVKVFGELEFWFALI 159 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999874 12333333332 33344466666766654433
Q ss_pred HHHHHHHHHhh-hhccc--ccccc----c----ccC-cccccCCchhHhHhHhhhccccccchhhHHhhccccc-cchhH
Q 013930 196 VLASVITLGSI-VWTGA--FDGVG----F----HQK-GTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKH-QFSYV 262 (433)
Q Consensus 196 ~~~~~~~~~~~-i~~~~--~~~~~----~----~~~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~ 262 (433)
-+..++.++++ ++... ....+ . +.. -.+.++.++..++.+.+|||.|.|.+-....|-|||+ ..+|+
T Consensus 160 KV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkA 239 (462)
T COG1113 160 KVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKA 239 (462)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHH
Confidence 32222222222 21111 11111 0 011 1255667889999999999999999999999999995 56787
Q ss_pred HHHHHHHHHHHHH-----HHHhHHHhhccccchhHhh-hcCCCCchhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHccc
Q 013930 263 LLVCFFLCTFIYA-----SMAIFGYMMFGSEVQSQIT-LNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRAST 336 (433)
Q Consensus 263 ~~~~~~i~~i~y~-----~~~~~gy~~fg~~~~~~~l-~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~ 336 (433)
+..-..-+.++|+ ++.+..+-.++++...-+. ...-+-+....+.++..+.....+.---++...+.+.++-.+
T Consensus 240 in~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~ 319 (462)
T COG1113 240 INSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQ 319 (462)
T ss_pred HhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhc
Confidence 7655555555554 4555555555553333222 111111122223333333333344444445555555554321
Q ss_pred CC---------CC-CC-ceehhhHHHHHHHHHHHhhccc--hHHHHHHHhhhhhhhhhhhhhhHHHHHHhcc
Q 013930 337 QY---------SK-RP-YSLLISTPLVISTVIVALVVPF--FGYLMTLVGAFLSVTASVILPCLCYLKISGA 395 (433)
Q Consensus 337 ~~---------~~-~~-~~~~~~~~~~~~~~~ia~~~~~--~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~ 395 (433)
.+ ++ -+ .-.+.+.+...+..++....|+ ++.+.+..+.. ....+.+=.+.|+|.||.
T Consensus 320 g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~--~l~vW~~I~~s~l~~rk~ 389 (462)
T COG1113 320 GDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLG--LLFVWLMILLSQLKLRKA 389 (462)
T ss_pred CcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhc
Confidence 11 11 11 1345566667777788888884 66666665543 356667778889998884
No 32
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.72 E-value=9.6e-15 Score=154.71 Aligned_cols=242 Identities=9% Similarity=0.079 Sum_probs=170.9
Q ss_pred CCCCCCchhHHHHHH-HHhhhhhhhchhH-HHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhh-CCCCCCHHHHHHHh
Q 013930 39 SRTTKTSVFKTCFNG-VNALSGVGILSTP-YALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDV-DSNIRSYPDIGDRA 114 (433)
Q Consensus 39 ~~~~~~s~~~~~~~l-i~~~iG~GiL~lP-~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~~y~~l~~~~ 114 (433)
.+.++.+++++++.- +.+++|+|++.-| +...++|.. +++.+++.++++..+...+.+.+.. .++...-..+.++.
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisra 152 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRS 152 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 456799999999998 9999999996555 677799987 8888999999999999999998776 56666777778899
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHH
Q 013930 115 FGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSAS 194 (433)
Q Consensus 115 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 194 (433)
+|+..+..+.+..++.....+..|.+.+++++..+++...........+..+.+.+++.+++..+. ..+.+...+++.+
T Consensus 153 lGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In-~~Gvk~~ak~q~v 231 (953)
T TIGR00930 153 LGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGIS-FAGMEWENKAQVL 231 (953)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence 999999999999998888889999999999999987542211000001112223222333333333 4566666776666
Q ss_pred HHHHHHHHHHhhhhcccccccc--------cc-----c---CcccccCCchhHhHhHhhhccccccchhhHHhhcccc-c
Q 013930 195 GVLASVITLGSIVWTGAFDGVG--------FH-----Q---KGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-H 257 (433)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~--------~~-----~---~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~ 257 (433)
.++..++.++.+++.++....+ .+ . +.......++...++++++||.|......+.+|+||| |
T Consensus 232 l~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP~r 311 (953)
T TIGR00930 232 FLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQK 311 (953)
T ss_pred HHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccChhh
Confidence 6555444443333332211100 00 0 0001111237778888888999999999999999999 6
Q ss_pred cchhHHHHHHHHHHHHHHHHHhHH
Q 013930 258 QFSYVLLVCFFLCTFIYASMAIFG 281 (433)
Q Consensus 258 ~~~~~~~~~~~i~~i~y~~~~~~g 281 (433)
++++++..++.+++++|+++.+..
T Consensus 312 ~IPratl~ai~i~~vlYllv~~~~ 335 (953)
T TIGR00930 312 AIPKGTLLAILTTTVVYLGSVVLF 335 (953)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999997643
No 33
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.71 E-value=2.7e-15 Score=143.74 Aligned_cols=352 Identities=13% Similarity=0.103 Sum_probs=217.4
Q ss_pred cCCCCCCCCchhHHHHHHHHhhhhhhhchhHHHHH-hhhHH--HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHH
Q 013930 36 YDDSRTTKTSVFKTCFNGVNALSGVGILSTPYALA-SGGWL--SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGD 112 (433)
Q Consensus 36 ~~~~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~-~~G~~--g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~ 112 (433)
+....+|+.+.+.++..++++++|+|++..|.... ++|.+ +++..++.++++...+.+.+|.....|+..-+.....
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~ 85 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYIS 85 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHH
Confidence 34457889999999999999999999999998876 57766 6666678999999999999998766666666666667
Q ss_pred HhcCccchhHHHHHHHHHHHHHH-HHHHHHhhhh-hhhhccCCcccccccccCCchhHHHHHHHHHhhccc--ccCCCch
Q 013930 113 RAFGQKGRLIVSVFMNIELYLVA-TGFLILEGDN-LENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVW--LDNLSLL 188 (433)
Q Consensus 113 ~~~G~~~~~~~~~~~~~~~~g~~-~~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~--~~~l~~l 188 (433)
++||+.......+.-.+...... ..+.+.++++ ++++++. ++. .+.....+..+++..+.. .-++|.-
T Consensus 86 ~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~-c~~-------p~~~~~lla~~~l~~lt~~n~~~V~~a 157 (479)
T KOG1287|consen 86 EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL-CDV-------PRVASKLLAAALLVLLTLINSFSVKWA 157 (479)
T ss_pred HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC-CCC-------chHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 89999888888876655555554 8888889998 8888873 221 011222222222222221 1234444
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccc----cccc---c-cCcccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccc
Q 013930 189 SYVSASGVLASVITLGSIVWTGAFD----GVGF---H-QKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQF 259 (433)
Q Consensus 189 ~~~s~~~~~~~~~~~~~~i~~~~~~----~~~~---~-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~ 259 (433)
.+++-+..++-+..+..++..+.+. ..+. + .+.+..+..++..++-...|+|.|+..+..+.+|+||| |.+
T Consensus 158 ~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktL 237 (479)
T KOG1287|consen 158 TRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTL 237 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccc
Confidence 4445455555555555555444331 1111 1 22334555679999999999999999999999999999 689
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHhhccccch--hHhh-hcCCC---CchhHHHHHHHHHHHHhhhhhhhhhhHHHHHH--
Q 013930 260 SYVLLVCFFLCTFIYASMAIFGYMMFGSEVQ--SQIT-LNLPT---SKLSSRLAIYTTLVNPIAKYALMVTPIVNSIK-- 331 (433)
Q Consensus 260 ~~~~~~~~~i~~i~y~~~~~~gy~~fg~~~~--~~~l-~~~~~---~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~-- 331 (433)
++++.+++.+++++|+++-+..+..-..+.. ++.. .-+.+ .++. .+.-+...++.+.+.--.++...+.+.
T Consensus 238 P~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~ 316 (479)
T KOG1287|consen 238 PRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAG 316 (479)
T ss_pred hHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999998876665432211 1110 00111 1122 111222222223332222222211111
Q ss_pred ---HHcccCCC-CCCcee--hhhHHHHHHHHHHHhhccchHHHHHHHhhhhhhhhhhhhhhHHHHHHhccc
Q 013930 332 ---MRASTQYS-KRPYSL--LISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGAY 396 (433)
Q Consensus 332 ---~~~~~~~~-~~~~~~--~~~~~~~~~~~~ia~~~~~~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~~ 396 (433)
...++.-. .+.++. ...........++....+|+..+++..+-.-.....+.+=+++++|.+++.
T Consensus 317 areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 317 AREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPP 387 (479)
T ss_pred HHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 11111000 001111 111222223333444446889999988877777788888899999888877
No 34
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.71 E-value=1.6e-14 Score=143.77 Aligned_cols=230 Identities=10% Similarity=0.098 Sum_probs=160.1
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhchhHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCc
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGILSTPYALA-SGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQ 117 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~-~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 117 (433)
+.+|+.+.++..+..++++||+|++..|.... ++|...++..++.++.....+..+.|...+.|....+.+.+++.+||
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~ 88 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGS 88 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCc
Confidence 57899999999999999999999999997654 56654666777888888888999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHH
Q 013930 118 KGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVL 197 (433)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 197 (433)
..++++.+..++.....+.+.....+++++.+.++.+ .+.+.++...+...+. ..+.|....++.....
T Consensus 89 ~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~~~i~~~~~~~lN-~~gv~~~~~~~~~~~~ 157 (456)
T PRK10238 89 FAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIP----------TWVSAAVFFVVINAIN-LTNVKVFGEMEFWFAI 157 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCc----------HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH
Confidence 9999999999988888888888888888877765321 1122222222222222 2344555555544333
Q ss_pred HHHHHHHhhh-----h-cccccccc--cc----cCcc-cccCCchhHhHhHhhhccccccchhhHHhhcccc-ccchhHH
Q 013930 198 ASVITLGSIV-----W-TGAFDGVG--FH----QKGT-LVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSYVL 263 (433)
Q Consensus 198 ~~~~~~~~~i-----~-~~~~~~~~--~~----~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~ 263 (433)
..+..++.++ . ........ .. .... +..+.++..++....|+|.|.+.+....+|+||| |+.+|++
T Consensus 158 iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi 237 (456)
T PRK10238 158 IKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKAT 237 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHH
Confidence 3222211111 1 11000000 00 0011 1223355677888999999999999999999999 5799999
Q ss_pred HHHHHHHHHHHHHHHh
Q 013930 264 LVCFFLCTFIYASMAI 279 (433)
Q Consensus 264 ~~~~~i~~i~y~~~~~ 279 (433)
..+.....+.|+..-.
T Consensus 238 ~~~~~~i~~~y~~~~~ 253 (456)
T PRK10238 238 NQVIYRILIFYIGSLA 253 (456)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888876433
No 35
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.70 E-value=8.2e-14 Score=138.87 Aligned_cols=233 Identities=13% Similarity=0.126 Sum_probs=160.8
Q ss_pred CCCCCCCchhHHHHHHHHhhhhhhhchhHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcC
Q 013930 38 DSRTTKTSVFKTCFNGVNALSGVGILSTPYA-LASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFG 116 (433)
Q Consensus 38 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP~a-~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G 116 (433)
++.+|+.+.++.+...++.++|+|++.+|.. .+.+|...++..++.++.....+..+.|...+.|......+.+++.+|
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G 84 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLG 84 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcC
Confidence 3567889999999999999999999999975 556776678888888999999999999999888888999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHH
Q 013930 117 QKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGV 196 (433)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 196 (433)
|..++++.+..++.............+.++..+.+..+ ...+.+.+.++...+. .++.|....++....
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~ln-~~gv~~~~~~~~~~~ 153 (457)
T PRK10580 85 PLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVP----------HWIWVLSVVLIICAVN-LMSVKVFGELEFWFS 153 (457)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----------hHHHHHHHHHHHHHHH-HccchhHHHHHHHHH
Confidence 99999999988877766666656666777766654322 1122222222222222 345566665554332
Q ss_pred HHHHHHHHhh-------hhccccc-ccc------cccC-cccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccch
Q 013930 197 LASVITLGSI-------VWTGAFD-GVG------FHQK-GTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFS 260 (433)
Q Consensus 197 ~~~~~~~~~~-------i~~~~~~-~~~------~~~~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~ 260 (433)
...+..++.+ ....... +.. ++.+ ..+.++.++..++....|+|.|.+......+|+||| |+.+
T Consensus 154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iP 233 (457)
T PRK10580 154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIP 233 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHH
Confidence 2222211111 1111111 000 0100 112233467788899999999999999999999999 4689
Q ss_pred hHHHHHHHHHHHHHHHHHhHH
Q 013930 261 YVLLVCFFLCTFIYASMAIFG 281 (433)
Q Consensus 261 ~~~~~~~~i~~i~y~~~~~~g 281 (433)
|++..+...+.++|.......
T Consensus 234 rAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 234 RAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888888775544
No 36
>PRK10836 lysine transporter; Provisional
Probab=99.70 E-value=3.9e-14 Score=142.27 Aligned_cols=237 Identities=8% Similarity=0.077 Sum_probs=151.5
Q ss_pred CCCCCCCchhHHHHHHHHhhhhhhhchhHH-HHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhc
Q 013930 38 DSRTTKTSVFKTCFNGVNALSGVGILSTPY-ALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAF 115 (433)
Q Consensus 38 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP~-a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~ 115 (433)
++.+|+.+.++.++..++++||+|++.+|. +.+++|.. .++..++.+++....+..+.|...+.|........+++.+
T Consensus 11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~ 90 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYV 90 (489)
T ss_pred ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHc
Confidence 356789999999999999999999999996 56678876 6788889999999999999999999999999999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHH
Q 013930 116 GQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASG 195 (433)
Q Consensus 116 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 195 (433)
|+..+++..+..+.................+..+.+..+ ...+..++.++...+. ..+.+..+..+...
T Consensus 91 g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~~lN-~~gv~~~~~~~~~~ 159 (489)
T PRK10836 91 EEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTP----------GWIWSALFLGVIFLLN-YISVRGFGEAEYWF 159 (489)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc----------hHHHHHHHHHHHHHHH-HHcchhhhhhHHHH
Confidence 999999999887765433333222223333433333211 1112222222222122 23444333332221
Q ss_pred H---HHHHHHHH---hhhhccccccc------ccccCc--ccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccch
Q 013930 196 V---LASVITLG---SIVWTGAFDGV------GFHQKG--TLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFS 260 (433)
Q Consensus 196 ~---~~~~~~~~---~~i~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~ 260 (433)
. +..+..++ .+...+...+. +++.+. ...++.++..+.....|+|.|.+.+....+|+||| |+.+
T Consensus 160 ~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iP 239 (489)
T PRK10836 160 SLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIP 239 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHH
Confidence 1 11111111 11111111110 111000 01122334455556779999999999999999999 6799
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHhhc
Q 013930 261 YVLLVCFFLCTFIYASMAIFGYMMF 285 (433)
Q Consensus 261 ~~~~~~~~i~~i~y~~~~~~gy~~f 285 (433)
|++..+...+.++|++.........
T Consensus 240 rAi~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 240 RAVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheec
Confidence 9999999999999998876554443
No 37
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.68 E-value=1e-13 Score=137.72 Aligned_cols=231 Identities=13% Similarity=0.161 Sum_probs=160.9
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCc
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQ 117 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 117 (433)
+.+|+.+.++.+...++.++|......+.+.++.|+. -.+..++.++.....+..+.|...+.|.........++.+||
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G~ 83 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFGP 83 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCc
Confidence 4678999999999999999995556667888889987 455556667777777888999988888889999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHH
Q 013930 118 KGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVL 197 (433)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 197 (433)
+.+++..+..++........+....++++..+++..+ .+...+++..+...+. .+..|...+++....+
T Consensus 84 ~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~----------~~~~~~~~~~~~~~ln-~~g~~~~~~i~~~~~~ 152 (442)
T TIGR00908 84 WGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGP----------GWLAALVFYIVFIGIN-ILGVGEAAKLEFVVTA 152 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----------hhHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHH
Confidence 9999999999888888888888888999888776432 1122222222222222 3455555555554433
Q ss_pred HHHHHHHhhhhcccc--ccccc-cc---Ccc---cccCCchhHhHhHhhhccccccchhhHHhhcccc-ccchhHHHHHH
Q 013930 198 ASVITLGSIVWTGAF--DGVGF-HQ---KGT---LVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSYVLLVCF 267 (433)
Q Consensus 198 ~~~~~~~~~i~~~~~--~~~~~-~~---~~~---~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~ 267 (433)
..+..+++.+..... +..+. +. +.. +..+.++..++...+|+|.|++.+..+.+|+||| |+.+|++..+.
T Consensus 153 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~ 232 (442)
T TIGR00908 153 VAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAI 232 (442)
T ss_pred HHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHH
Confidence 333222222211111 10010 00 000 1122356778888999999999999999999999 67999999999
Q ss_pred HHHHHHHHHHHhH
Q 013930 268 FLCTFIYASMAIF 280 (433)
Q Consensus 268 ~i~~i~y~~~~~~ 280 (433)
.++.++|.....+
T Consensus 233 ~~~~~~~~~~~~~ 245 (442)
T TIGR00908 233 LTLLALAAGILVV 245 (442)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877554
No 38
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.66 E-value=2.5e-13 Score=136.43 Aligned_cols=229 Identities=12% Similarity=0.079 Sum_probs=157.8
Q ss_pred CCCCchhHHHHHHHHhhhhhhhchhHH-HHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCC-CCCCHHHHHHHhcCc
Q 013930 41 TTKTSVFKTCFNGVNALSGVGILSTPY-ALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDS-NIRSYPDIGDRAFGQ 117 (433)
Q Consensus 41 ~~~~s~~~~~~~li~~~iG~GiL~lP~-a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~-~~~~y~~l~~~~~G~ 117 (433)
+|+++.++.....++.++|+|++..|. +.+++|.. .++..++.+++.......+.|..+..| ....|.+.+++.+||
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 468999999999999999999998885 56678866 466677888888888999999988887 455899999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHH
Q 013930 118 KGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVL 197 (433)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 197 (433)
+.++++.+..++.....+.+.....+..+..+.+... ...+..+..++...+ -.++.|...+++.....
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~i-n~~gv~~~~~~~~~~~~ 149 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVN----------PAVWIAIFYVFIVII-NLFGVKGYGEAEFWFSS 149 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHHHH-HHhcchHHHHHHHHHHH
Confidence 9999999999888877777777777777765543211 112222222222222 24556666666544432
Q ss_pred HHHHHHH---h-hhhcccccc--cc------cccC-cccc-----cCCchhHhHhHhhhccccccchhhHHhhcccc-cc
Q 013930 198 ASVITLG---S-IVWTGAFDG--VG------FHQK-GTLV-----NWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQ 258 (433)
Q Consensus 198 ~~~~~~~---~-~i~~~~~~~--~~------~~~~-~~~~-----~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~ 258 (433)
..+..++ + .+.....+. .. +..+ .... .+.++..++....|+|.|.+....+.+|+||| |+
T Consensus 150 ~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~ 229 (478)
T TIGR00913 150 IKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKS 229 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhH
Confidence 2221111 1 111110000 00 0000 1111 13457788889999999999999999999999 67
Q ss_pred chhHHHHHHHHHHHHHHHHHhH
Q 013930 259 FSYVLLVCFFLCTFIYASMAIF 280 (433)
Q Consensus 259 ~~~~~~~~~~i~~i~y~~~~~~ 280 (433)
.+|++..+..++.++|.+....
T Consensus 230 iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 230 IPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987544
No 39
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.65 E-value=2.2e-13 Score=134.98 Aligned_cols=236 Identities=16% Similarity=0.158 Sum_probs=164.1
Q ss_pred CchhHHHHHHHHhhhhhhhchhHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHchhhCCCCCCHHHHHHHhcCccchhH
Q 013930 44 TSVFKTCFNGVNALSGVGILSTPYALASGGWLSLILLFFIAAVT-FYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRLI 122 (433)
Q Consensus 44 ~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~g~i~l~~~~~~~-~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 122 (433)
+|+++++...++.++|+|++..| ...+.|...+...++.+.+. ........|..++.|+.....+..++.+||+.+++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~ 79 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFI 79 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhc
Confidence 47889999999999999999999 66677766555555555555 56777778887778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccC-CcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHHHH-
Q 013930 123 VSVFMNIELYLVATGFLILEGDNLENLFPN-TAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASV- 200 (433)
Q Consensus 123 ~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~- 200 (433)
..+..++........+....++++.+.+.. ..++ . .......+..++.......++.|..++++.......+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~ 153 (426)
T PF13520_consen 80 VGWLYWVAYILSLASVASSFASYLLSLFGPDLNPS----P--WPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIV 153 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCS----H--HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEeeccccccccchhhhhhhccccccccc----c--chheeeeecccccceEeeechhhhhhhhhhhhhhhhhh
Confidence 999999988888888888888888887643 1110 0 0111211222222222224566666776665554444
Q ss_pred HHHHhhhhcccc---ccccc-----ccCcccccCCchhHhHhHhhhccccccchhhHHhhccccccchhHHHHHHHHHHH
Q 013930 201 ITLGSIVWTGAF---DGVGF-----HQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLLVCFFLCTF 272 (433)
Q Consensus 201 ~~~~~~i~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~i~~i 272 (433)
..++.++..+.. .+... .....+..+..+..++...+|+|.|.+....+.+|+|| |+.+|++..+..++.+
T Consensus 154 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~~~~~~i 232 (426)
T PF13520_consen 154 IPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIISIIIVAI 232 (426)
T ss_dssp HHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHHHHHHHH
T ss_pred hhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeecccchhHHHH
Confidence 232222222211 11111 01122334556889999999999999999999999998 8999999999999999
Q ss_pred HHHHHHhHHHhhccc
Q 013930 273 IYASMAIFGYMMFGS 287 (433)
Q Consensus 273 ~y~~~~~~gy~~fg~ 287 (433)
+|.+....-....++
T Consensus 233 ~y~l~~~~~~~~~~~ 247 (426)
T PF13520_consen 233 IYILFSIALLGALPD 247 (426)
T ss_dssp HHHHHHHHHHTTSTH
T ss_pred HHhhhhheeeecccc
Confidence 999998777766654
No 40
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.64 E-value=2e-13 Score=137.67 Aligned_cols=243 Identities=14% Similarity=0.115 Sum_probs=159.0
Q ss_pred CCCCCCCCchhHHHHHHHHhhhhhhhchhHHHH-HhhhHHHH--HHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHH
Q 013930 37 DDSRTTKTSVFKTCFNGVNALSGVGILSTPYAL-ASGGWLSL--ILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDR 113 (433)
Q Consensus 37 ~~~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~-~~~G~~g~--i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~ 113 (433)
+++.+|+.+.++.+...+++++|+|++..|... .++|..|. +..++.++.....+..+.|.....|+........++
T Consensus 37 ~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~ 116 (501)
T TIGR00911 37 AVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILE 116 (501)
T ss_pred ccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHh
Confidence 345788999999999999999999999999764 45675443 455677778888889999998888888888888999
Q ss_pred hcCccchhHHHHHHHH-HHHHHHHHHHHHhhhhhhh-hccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHH
Q 013930 114 AFGQKGRLIVSVFMNI-ELYLVATGFLILEGDNLEN-LFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYV 191 (433)
Q Consensus 114 ~~G~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 191 (433)
.+||+.+++..+..+. ...+.+..+....++++.+ +.+....+ .+. ...+.+....+...+ -.++.|...++
T Consensus 117 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~--~~~---~~~i~~~~i~~~~~l-n~~Gvk~~~~~ 190 (501)
T TIGR00911 117 VFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVP--EWA---IRLVAVLCVLLLTLV-NCLSVKWATRV 190 (501)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--hHH---HHHHHHHHHHHHHHH-HHhhhHHHHHH
Confidence 9999998888876543 2234455555556666432 33322111 000 011111111122222 24566677777
Q ss_pred HHHHHHHHHHHHHhhhhccc---cccc--ccccC----cccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccchh
Q 013930 192 SASGVLASVITLGSIVWTGA---FDGV--GFHQK----GTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSY 261 (433)
Q Consensus 192 s~~~~~~~~~~~~~~i~~~~---~~~~--~~~~~----~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~ 261 (433)
+.......+..++.++..+. ..+. ..+.+ ....++.++..++....|+|.|.+.+..+.+|+||| |+.+|
T Consensus 191 ~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPr 270 (501)
T TIGR00911 191 QDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPI 270 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHH
Confidence 66655544433332222211 1111 01111 001233467788999999999999999999999999 67999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhc
Q 013930 262 VLLVCFFLCTFIYASMAIFGYMMF 285 (433)
Q Consensus 262 ~~~~~~~i~~i~y~~~~~~gy~~f 285 (433)
++..+..++.++|++.........
T Consensus 271 Ai~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 271 AIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999876554444
No 41
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.64 E-value=2.8e-13 Score=134.47 Aligned_cols=329 Identities=13% Similarity=0.139 Sum_probs=193.6
Q ss_pred HHHhhhhhhhchhHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCccchhHHHHHHHHHH
Q 013930 53 GVNALSGVGILSTPY-ALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRLIVSVFMNIEL 131 (433)
Q Consensus 53 li~~~iG~GiL~lP~-a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~ 131 (433)
.++++||+|++..|. +.++.|...++..++.+++....+..+.|...+.|......+.+++.+||+.+++..+..++..
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~ 82 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW 82 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 467899999999996 6778887688888899999999999999999989899999999999999999999999998877
Q ss_pred HHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHHhhhhccc
Q 013930 132 YLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVITLGSIVWTGA 211 (433)
Q Consensus 132 ~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~~ 211 (433)
...........+..+..+.+..+ ...+.+.+.++...+. ..+.|..+.++.......+..++.++..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~lN-~~gv~~~~~i~~~~~~~ki~~li~~ii~~~ 151 (446)
T PRK10197 83 VLVIPLEANIAAMILHSWVPGIP----------IWLFSLVITLALTGSN-LLSVKNYGEFEFWLALCKVIAILAFIFLGA 151 (446)
T ss_pred HHHHHHHHHHHHHHHHhccccCc----------HHHHHHHHHHHHHHHH-HHhhHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 66666666556655555443211 1122222222222222 345555555554443322222222211111
Q ss_pred ---cccc------c----cccC-cccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccchhHHHHHHHHHHHHHHH
Q 013930 212 ---FDGV------G----FHQK-GTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSYVLLVCFFLCTFIYAS 276 (433)
Q Consensus 212 ---~~~~------~----~~~~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~i~~i~y~~ 276 (433)
.... + ++.. ..+..+.++..++....|+|.|.+.+....+|+||| |+.+|++..+...+.++|++
T Consensus 152 ~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil 231 (446)
T PRK10197 152 VAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLC 231 (446)
T ss_pred HHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 0000 0 0000 012234578899999999999999999999999999 56999999999999999998
Q ss_pred HHhHHHhhccccchh--------HhhhcCCCCchhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH-----cc----cCC-
Q 013930 277 MAIFGYMMFGSEVQS--------QITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMR-----AS----TQY- 338 (433)
Q Consensus 277 ~~~~gy~~fg~~~~~--------~~l~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~-----~~----~~~- 338 (433)
..+........+..+ ........ +....+.....++..+.+..-.++...+.+... ++ +.+
T Consensus 232 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~-~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~ 310 (446)
T PRK10197 232 SIFVVVALIPWNMPGLKAVGSYRSVLELLNI-PHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINR 310 (446)
T ss_pred HHHHHheecCcCcccccccCcHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCc
Confidence 766643332221111 11222221 222233333333333333333333333333221 11 111
Q ss_pred CCCCceehhhH-HHHHHHHHHHhhcc--chHHHHHHHhhhhhhhhhhhhhhHHHHHHhcc
Q 013930 339 SKRPYSLLIST-PLVISTVIVALVVP--FFGYLMTLVGAFLSVTASVILPCLCYLKISGA 395 (433)
Q Consensus 339 ~~~~~~~~~~~-~~~~~~~~ia~~~~--~~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~ 395 (433)
++.+.+.+.-. +..++..+.....| .++.++++++... .+.|.++++.+++.||+
T Consensus 311 ~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~~ 368 (446)
T PRK10197 311 SKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRKI 368 (446)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 12222222222 22222222222222 4677777766444 48888899888888764
No 42
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.61 E-value=8e-13 Score=131.46 Aligned_cols=235 Identities=11% Similarity=0.047 Sum_probs=155.8
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhchhHHHH-HhhhHH--HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhc
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGILSTPYAL-ASGGWL--SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAF 115 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~-~~~G~~--g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~ 115 (433)
+.+|+.+.++.+...++.++|+|++..|... .+.|.. .+...++.+++....+....|.....|+........++.+
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~~ 84 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAG 84 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHhc
Confidence 5778999999999999999999999999764 455643 5566677788888888899998888877777777788999
Q ss_pred CccchhHHHHHHH-HHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHH
Q 013930 116 GQKGRLIVSVFMN-IELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSAS 194 (433)
Q Consensus 116 G~~~~~~~~~~~~-~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 194 (433)
||..+++..+..+ .........+....++++..+.+... . ......+ ..++.+-..-.++.+...+++..
T Consensus 85 g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~------~--~~~~~~~-~~~~~~~~ln~~gv~~~~~v~~~ 155 (445)
T PRK11357 85 SRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDP------L--LGKFIAA-GLIIAFMLLHLRSVEGGAAFQTL 155 (445)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch------H--HHHHHHH-HHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999888644 33334455566677777665443211 0 0111111 11111111224566666666665
Q ss_pred HHHHHHHHHHhhhhccc--ccccccccCcc-----cccCCchhHhHhHhhhccccccchhhHHhhcccc-ccchhHHHHH
Q 013930 195 GVLASVITLGSIVWTGA--FDGVGFHQKGT-----LVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSYVLLVC 266 (433)
Q Consensus 195 ~~~~~~~~~~~~i~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~ 266 (433)
.....+..++.++..+. ..+.+...+.+ ..++.++..++....|+|.|.+....+.+|+||| |+.+|++..+
T Consensus 156 ~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~ 235 (445)
T PRK11357 156 ITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGS 235 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHH
Confidence 55444333222221111 11111111111 1123456778889999999999999999999999 5789999999
Q ss_pred HHHHHHHHHHHHhHHH
Q 013930 267 FFLCTFIYASMAIFGY 282 (433)
Q Consensus 267 ~~i~~i~y~~~~~~gy 282 (433)
..++.++|.+......
T Consensus 236 ~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 236 CLLVLVLYTLLALVIS 251 (445)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998776544
No 43
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.60 E-value=1.3e-12 Score=126.02 Aligned_cols=346 Identities=12% Similarity=0.121 Sum_probs=233.0
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhh-chhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcC
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGI-LSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFG 116 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~Gi-L~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G 116 (433)
+.+|++..++..+.-++.+||+|. ++.-.+.+++|.. -++..++.+.+.+..+..+.|.+...|...+|..++.+..+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvd 120 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVD 120 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcC
Confidence 477899999999999999999999 5888999999999 77788899999999999999999999877789999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcc--cccCCCchHHH-HH
Q 013930 117 QKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTV--WLDNLSLLSYV-SA 193 (433)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~--~~~~l~~l~~~-s~ 193 (433)
+-.++.+.+.+++....++..-++..+..++.+.+..- + ...|..++.++++.+. -.|.+....++ |.
T Consensus 121 pa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v-~--------~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~ 191 (541)
T COG0833 121 PAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTV-P--------PWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS 191 (541)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCC-C--------hHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence 99999999999999999999999999999999986551 1 2366666665554443 25666666555 33
Q ss_pred HHHHHHHHHHHh--hhhcccccccc------cccC-cccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccchhHH
Q 013930 194 SGVLASVITLGS--IVWTGAFDGVG------FHQK-GTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSYVL 263 (433)
Q Consensus 194 ~~~~~~~~~~~~--~i~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~ 263 (433)
+-+++++..++. ++..+...+.+ +.++ ....++.++...+-...|||.|.|.+--...|-+|| |.++|++
T Consensus 192 iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAi 271 (541)
T COG0833 192 IKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAI 271 (541)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHH
Confidence 333333322222 12222222111 1112 224557788899999999999999999999999999 5689999
Q ss_pred HHHHHHHHHHHHHHHhHHHhh--cccc----------chhHhhhcCCC--CchhHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 013930 264 LVCFFLCTFIYASMAIFGYMM--FGSE----------VQSQITLNLPT--SKLSSRLAIYTTLVNPIAKYALMVTPIVNS 329 (433)
Q Consensus 264 ~~~~~i~~i~y~~~~~~gy~~--fg~~----------~~~~~l~~~~~--~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~ 329 (433)
.-.+.-+.++|++.-++--+. |.|. ..++....+.+ -.....+.+..+++..+..----++..-+.
T Consensus 272 k~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~ 351 (541)
T COG0833 272 KQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRM 351 (541)
T ss_pred HHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHH
Confidence 999999999998654432221 2220 00111111111 122334555555555555444455666666
Q ss_pred HHHHcccCC----------CCCCc-eehhhHHHHHHHHHHHhhcc--chHHHHHHHhhhhhhhhhhhhhhHHHHHHhcc
Q 013930 330 IKMRASTQY----------SKRPY-SLLISTPLVISTVIVALVVP--FFGYLMTLVGAFLSVTASVILPCLCYLKISGA 395 (433)
Q Consensus 330 ~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~ia~~~~--~~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~ 395 (433)
+.++-.+.. +.++. ..+.+.++.+++++.+.... -++-++++.|... .++.+-=++.|++.||.
T Consensus 352 L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~--~i~W~~I~~shirFR~A 428 (541)
T COG0833 352 LYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSG--FIAWGSICLSHIRFRRA 428 (541)
T ss_pred HHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 665443211 12222 23445555555555555532 3677777777443 46666677888876654
No 44
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.59 E-value=4.8e-13 Score=127.02 Aligned_cols=285 Identities=14% Similarity=0.158 Sum_probs=206.5
Q ss_pred CCchhHHHHHHHHhhhhhhhchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCccchhH
Q 013930 43 KTSVFKTCFNGVNALSGVGILSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRLI 122 (433)
Q Consensus 43 ~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 122 (433)
|.|..|....+...++|+|++.+|....+.+-.|++..++.+.......+++.+..+++ +.+|..|+.++.+||+.+++
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~~ll~~~~~l~~~~l~~~l~~~~-p~~~l~~~~~~~~Gk~lg~i 79 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWISVLLGGLIGLLLALLIYYLLKRF-PGKTLVEISEKLFGKWLGKI 79 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHhCcHHHHH
Confidence 57899999999999999999999998765431477777777777777777777777776 66999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHH
Q 013930 123 VSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVIT 202 (433)
Q Consensus 123 ~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 202 (433)
.......+.+..........++.++..+-...+. .......++.......++++.+.+.+.+.....+..
T Consensus 80 i~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP~----------~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~ 149 (320)
T PF03845_consen 80 INLLYILYFLLISALVLREFSEFIKTYLLPETPI----------WVIILLFLLVAAYAARKGIEVIARVAEILFPIFLIL 149 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCH----------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998865333211 233333333333444778888888766665555554
Q ss_pred HHhhhhccccccccc--ccCcccccCCchhHhHhHhhhccccccchhhHHhhccccccchhHHHHHHHHHHHHHHHHHhH
Q 013930 203 LGSIVWTGAFDGVGF--HQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLLVCFFLCTFIYASMAIF 280 (433)
Q Consensus 203 ~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~i~~i~y~~~~~~ 280 (433)
.+.+..... .+.++ -.|....++.++.++.....+.|.+...+..+.+.+|+|||.+|....+..++.++|...-+.
T Consensus 150 ~~~i~~~~~-~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 228 (320)
T PF03845_consen 150 LLLILLLSI-PNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLFIIFI 228 (320)
T ss_pred HHHHHHHhc-ccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333322 22222 234446677889999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccchhHhh-------hcCCCCchhH---HHHHHHHHHHHhhhhhhhhhhHHHHHHHHcccCCC
Q 013930 281 GYMMFGSEVQSQIT-------LNLPTSKLSS---RLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYS 339 (433)
Q Consensus 281 gy~~fg~~~~~~~l-------~~~~~~~~~~---~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~ 339 (433)
....||++..++.. ...+-.+... .+...........+.....+...+.+.+.++.+++
T Consensus 229 ~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 297 (320)
T PF03845_consen 229 TIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLKDY 297 (320)
T ss_pred HHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99999975444221 1111011111 12223344455667777778888888888854433
No 45
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.53 E-value=6.6e-13 Score=132.27 Aligned_cols=351 Identities=13% Similarity=0.114 Sum_probs=228.4
Q ss_pred CCCCCCCchhHHHHHHHHhhhhhhhc-hhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCC-CCHHHHHHHh
Q 013930 38 DSRTTKTSVFKTCFNGVNALSGVGIL-STPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNI-RSYPDIGDRA 114 (433)
Q Consensus 38 ~~~~~~~s~~~~~~~li~~~iG~GiL-~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~-~~y~~l~~~~ 114 (433)
++.+|+++.++..+.-+++++|+|++ ....+.++.|.. -++..++.+.....++.++.|...+.|.. .++...+++.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 46789999999999999999999995 555778888887 77777888899999999999999888884 8899999999
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhc---------cCCcccccccccCCchhHHHHHHHHHhhcccccCC
Q 013930 115 FGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLF---------PNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNL 185 (433)
Q Consensus 115 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 185 (433)
.|+-..+.+.+.+++.....+.+.....+.+++.+. +..+. ..|. .-.+..+..+.+...-..-+.
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~--~~~~---~~fla~~v~in~~gv~~~ge~ 180 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNP--GGWI---PDFLAFILIINLFGVLAYGEV 180 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCC--CccH---HHHHHHHHHHHHHHHhhccce
Confidence 999999999999999999999999999999999986 11110 0110 001111111222222222344
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhccccccc--cc------ccCc--ccccCCchhHhHhHhhhccccccchhhHHhhccc
Q 013930 186 SLLSYVSASGVLASVITLGSIVWTGAFDGV--GF------HQKG--TLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKK 255 (433)
Q Consensus 186 ~~l~~~s~~~~~~~~~~~~~~i~~~~~~~~--~~------~~~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~ 255 (433)
+.....+.+-...-++++.+++..+..... ++ ++++ .+..++++.+++....|+|.|.+.+-...+|-||
T Consensus 181 ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kN 260 (554)
T KOG1286|consen 181 EFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKN 260 (554)
T ss_pred eehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 444444444333333333334444332211 11 1121 1445789999999999999999999999999999
Q ss_pred c-ccchhHHHHHHHHHHHHHHHHHhHHHhhcccc---chhHh--------hhcCCCCchhHHHHHHHHHHHHhhhhhhhh
Q 013930 256 K-HQFSYVLLVCFFLCTFIYASMAIFGYMMFGSE---VQSQI--------TLNLPTSKLSSRLAIYTTLVNPIAKYALMV 323 (433)
Q Consensus 256 p-~~~~~~~~~~~~i~~i~y~~~~~~gy~~fg~~---~~~~~--------l~~~~~~~~~~~i~~~~~~~~~~~s~p~~~ 323 (433)
| |+.++++..++..++++|++..+.--+.-..+ ..++. -.+.+.-.....+.+...++..+.+---.+
T Consensus 261 P~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~ 340 (554)
T KOG1286|consen 261 PRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSL 340 (554)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHh
Confidence 9 67999999999999999999877554432211 11111 111122122223555555556666655566
Q ss_pred hhHHHHHHHHcccC--------CCCCCceehhhHHHHHHHHHHHhhccc-----hHHHHHHHhhhhhhhhhhhhhhHHHH
Q 013930 324 TPIVNSIKMRASTQ--------YSKRPYSLLISTPLVISTVIVALVVPF-----FGYLMTLVGAFLSVTASVILPCLCYL 390 (433)
Q Consensus 324 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ia~~~~~-----~~~v~~l~G~~~~~~~~~ilP~~~~l 390 (433)
++.-+.+..+-... -+++...+.......+...+.++.... ++.++++.|. +..+++.+=+++|+
T Consensus 341 y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si--~tl~~w~~i~~~~i 418 (554)
T KOG1286|consen 341 YAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSI--GTLFAWTLVALSHL 418 (554)
T ss_pred HHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhH--HHHHHHHHHHHHHe
Confidence 77766666553211 112222344444444455555555432 5788888763 33567777777777
Q ss_pred HHhcc
Q 013930 391 KISGA 395 (433)
Q Consensus 391 ~~~~~ 395 (433)
+.|+.
T Consensus 419 ~~R~a 423 (554)
T KOG1286|consen 419 RFRYA 423 (554)
T ss_pred eeeec
Confidence 76654
No 46
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.53 E-value=2.1e-11 Score=122.19 Aligned_cols=248 Identities=14% Similarity=0.160 Sum_probs=170.5
Q ss_pred CCCCCCCCchhH-HHHHHHHhhhhhhhchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhc
Q 013930 37 DDSRTTKTSVFK-TCFNGVNALSGVGILSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAF 115 (433)
Q Consensus 37 ~~~~~~~~s~~~-~~~~li~~~iG~GiL~lP~a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~ 115 (433)
+++++++.+.++ .....++.++|.|++.+|......+....+..++.++..........|..++.|+...+.+..++.+
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~ 86 (466)
T COG0531 7 SSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRAL 86 (466)
T ss_pred chhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhc
Confidence 345677888888 8889999999999999999887665222222455556666667778888777888888999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHH
Q 013930 116 GQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASG 195 (433)
Q Consensus 116 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 195 (433)
||+.+++..+..++.......+.....+..+..+++......... .......+......-+.-.++.+...++....
T Consensus 87 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~ 163 (466)
T COG0531 87 GPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGP---LLIILIALALIALLTLLNLRGIKASAKINSII 163 (466)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCc---hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999999999999988888887532000000 01111111111122222245666666666666
Q ss_pred HHHHHHHHHhhhhcccccccc--cc--cCc--ccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccchhHHHHHHH
Q 013930 196 VLASVITLGSIVWTGAFDGVG--FH--QKG--TLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSYVLLVCFF 268 (433)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~~--~~--~~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~ 268 (433)
.+..+...+.+.......... .+ .+. ....+..+..++....++|.|.+...+..+|+||| |+.+|++..+..
T Consensus 164 ~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~ 243 (466)
T COG0531 164 TILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLL 243 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHH
Confidence 555554444433332221111 11 111 11122357788999999999999999999999999 678999999999
Q ss_pred HHHHHHHHHHhHHHhhccc
Q 013930 269 LCTFIYASMAIFGYMMFGS 287 (433)
Q Consensus 269 i~~i~y~~~~~~gy~~fg~ 287 (433)
.+.++|+..........++
T Consensus 244 ~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 244 IVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHhCccH
Confidence 9999999998888777664
No 47
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.50 E-value=1.3e-10 Score=116.92 Aligned_cols=239 Identities=10% Similarity=-0.008 Sum_probs=140.5
Q ss_pred CCCCCCchhHHHHHHHHhhhh--hhhch-hHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHh
Q 013930 39 SRTTKTSVFKTCFNGVNALSG--VGILS-TPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRA 114 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG--~GiL~-lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~ 114 (433)
+.+|+.+.++.+...++. +| .|+.. .+.+.++.|.. .++..++.+++....+..+.|...+.|........+++.
T Consensus 9 ~l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~ 87 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKL 87 (482)
T ss_pred eeecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHh
Confidence 467789999988888884 44 66643 44567778886 567788888888889999999999998889999999999
Q ss_pred cCc----cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHH--HHHhhcccccCCCch
Q 013930 115 FGQ----KGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIA--LIILPTVWLDNLSLL 188 (433)
Q Consensus 115 ~G~----~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~pl~~~~~l~~l 188 (433)
+|+ ...+++.+..++.....+.+.....++++........+. +.+.. .++....+.. ....-..-.+..|..
T Consensus 88 ~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~~~~~~~~~~in~~g~k~~ 165 (482)
T TIGR00907 88 APPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPG-REYIP-TRWHIFGIMIGIHLIHALINSLPTKWL 165 (482)
T ss_pred cccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCccc-cCchhhhhHHHHHHHHHHHHHhhHhHH
Confidence 875 456666777766666666655556666665543221110 00000 1111111111 111111113344555
Q ss_pred HHHHHHHHHHHHHHHH-hhhhcccccccccc-------cCcccc-cC--C--chhHhHhHhhhccccccchhhHHhhccc
Q 013930 189 SYVSASGVLASVITLG-SIVWTGAFDGVGFH-------QKGTLV-NW--K--GIPSSISLYAFCYCAHPVFPTLYTSMKK 255 (433)
Q Consensus 189 ~~~s~~~~~~~~~~~~-~~i~~~~~~~~~~~-------~~~~~~-~~--~--~~~~~~~~~~faf~~~~~i~~i~~~m~~ 255 (433)
..++....+..++..+ .++........+.+ ...+.. .+ . ++..++....|+|.|.+......+|+||
T Consensus 166 ~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~kn 245 (482)
T TIGR00907 166 PRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIEN 245 (482)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcCC
Confidence 5555443332222222 11111111100000 000000 11 1 3445566678999999999999999999
Q ss_pred c-ccchhHHHHHHHHHHHHHHHHHhH
Q 013930 256 K-HQFSYVLLVCFFLCTFIYASMAIF 280 (433)
Q Consensus 256 p-~~~~~~~~~~~~i~~i~y~~~~~~ 280 (433)
| |+.+|++..+..+..+++.+..+.
T Consensus 246 P~r~iP~Ai~~s~~i~~~~~~~~~l~ 271 (482)
T TIGR00907 246 PEVVGPRAIIGAVAIGIVTGFCFNIV 271 (482)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 9 679999999988877655544443
No 48
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.47 E-value=3.3e-10 Score=113.54 Aligned_cols=249 Identities=14% Similarity=0.052 Sum_probs=152.6
Q ss_pred CCCCCCCchhHHHHHHHHhh-hhhhhchhHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhc
Q 013930 38 DSRTTKTSVFKTCFNGVNAL-SGVGILSTPYA-LASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAF 115 (433)
Q Consensus 38 ~~~~~~~s~~~~~~~li~~~-iG~GiL~lP~a-~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~ 115 (433)
++.+|+.+.++.+..-++.+ +|+|+..++.. ..+.|...+...++.++.....+..+.|..+++|.........++.+
T Consensus 9 ~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~ 88 (475)
T TIGR03428 9 PQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMG 88 (475)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHc
Confidence 35778999999999999875 99999888865 55666645556677777888888899999999998899999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcc--cccccc-cCC--chhHHHHHHHHHhhcccccCCCchHH
Q 013930 116 GQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAI--ELGGFT-LGG--KQCFVVIIALIILPTVWLDNLSLLSY 190 (433)
Q Consensus 116 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~--~~~~~~-~~~--~~~~~~i~~~~~~pl~~~~~l~~l~~ 190 (433)
||+..+++.+..++................+..+.+.... ..+.+. ... +.....+..++..-+.-.+..|...+
T Consensus 89 g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~~ 168 (475)
T TIGR03428 89 GEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSR 168 (475)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 9999999999888766554444444444444333211100 000000 000 11111111111111112345566666
Q ss_pred HHHHHHHHHHHHHHhhhhccccc-ccc----cccC--cccccC-CchhHhHhHhhhccccccchhhHHhhcccc-ccchh
Q 013930 191 VSASGVLASVITLGSIVWTGAFD-GVG----FHQK--GTLVNW-KGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSY 261 (433)
Q Consensus 191 ~s~~~~~~~~~~~~~~i~~~~~~-~~~----~~~~--~~~~~~-~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~ 261 (433)
++....+..+..++.++...... +.+ .+.. ....++ ..+..+.....|+|.|.+....+.+|+||| |+.+|
T Consensus 169 i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPr 248 (475)
T TIGR03428 169 VNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPR 248 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhH
Confidence 66555443333222222221111 110 0000 000111 134456667789999999999999999999 67899
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcc
Q 013930 262 VLLVCFFLCTFIYASMAIFGYMMFG 286 (433)
Q Consensus 262 ~~~~~~~i~~i~y~~~~~~gy~~fg 286 (433)
++..+..++.++|.++-+......+
T Consensus 249 ai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 249 TILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999988877766555444333
No 49
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.42 E-value=4.2e-10 Score=113.41 Aligned_cols=241 Identities=12% Similarity=0.072 Sum_probs=140.2
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHchhhCCC-CCCHHHHHHHhcCc
Q 013930 40 RTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWLSLILLFFIAAVT-FYSGLLIKRCMDVDSN-IRSYPDIGDRAFGQ 117 (433)
Q Consensus 40 ~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~g~i~l~~~~~~~-~~s~~~l~~~~~~~~~-~~~y~~l~~~~~G~ 117 (433)
++|+.+.++.+...+++++|.+ .+|.++++.|..+++..++.+++. ........|....+|. ........++.+||
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~ 82 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGP 82 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCc
Confidence 4678999999999999999976 678888888887666666666554 4466778898888876 68899999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhh-hhhhhccCCccc-ccccccCCchhHHHHHHHH--HhhcccccCCCchHHHHH
Q 013930 118 KGRLIVSVFMNIELYLVATGFLILEGD-NLENLFPNTAIE-LGGFTLGGKQCFVVIIALI--ILPTVWLDNLSLLSYVSA 193 (433)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~-~l~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~--~~pl~~~~~l~~l~~~s~ 193 (433)
+.+++..+..+................ .....+...... .+....+......++..+. ..-..-.|..+..++++.
T Consensus 83 ~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i~~ 162 (496)
T PRK15238 83 KFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAKVTS 162 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 999887765444333222111100000 000011110000 0000001111111111111 222222567777777775
Q ss_pred HHHHHHHH----HH-Hhhhhccccccc---cccc----CcccccC---CchhHhHhHhhhccccccchhhHHhhcccc-c
Q 013930 194 SGVLASVI----TL-GSIVWTGAFDGV---GFHQ----KGTLVNW---KGIPSSISLYAFCYCAHPVFPTLYTSMKKK-H 257 (433)
Q Consensus 194 ~~~~~~~~----~~-~~~i~~~~~~~~---~~~~----~~~~~~~---~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~ 257 (433)
++....+. .+ +..+........ +... +....++ .++..++....|+|.|.+.+....+|+||| |
T Consensus 163 ~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~ 242 (496)
T PRK15238 163 IGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENPEK 242 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccCCCc
Confidence 54322221 11 111111111100 0000 0001122 246677888899999999999999999999 5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhHHH
Q 013930 258 QFSYVLLVCFFLCTFIYASMAIFGY 282 (433)
Q Consensus 258 ~~~~~~~~~~~i~~i~y~~~~~~gy 282 (433)
+.+|++..+...+.++|.+..+...
T Consensus 243 ~~p~ai~~~~~~~~~~y~l~~~~~~ 267 (496)
T PRK15238 243 NFPKGIIIAAIVISIGYSLAIFLWG 267 (496)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999998655443
No 50
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.39 E-value=1e-09 Score=110.05 Aligned_cols=239 Identities=12% Similarity=0.139 Sum_probs=133.9
Q ss_pred CCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHchhhCCCCCCHHHHHHHhcCccch
Q 013930 42 TKTSVFKTCFNGVNALSGVGILSTPYALASGGWLSLILLFFIAAVTF-YSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGR 120 (433)
Q Consensus 42 ~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~g~i~l~~~~~~~~-~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~ 120 (433)
+|++.+..++..+.++++.. .+|.+ ++.|...++..++.+++.. -.+....|.....|+........++.+|++.+
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~--~~~~~-a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~g 77 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLR--GLPAE-AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWG 77 (474)
T ss_pred CcccHHHHHHHHHHHHHHhh--cchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHH
Confidence 35777777777777777754 55755 6788776666666666554 46777888888888888888999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHH--HHhhcccccCCCchHHHHHHH-HH
Q 013930 121 LIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIAL--IILPTVWLDNLSLLSYVSASG-VL 197 (433)
Q Consensus 121 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~pl~~~~~l~~l~~~s~~~-~~ 197 (433)
++..+..+........+-....+..+..+.+..... +.. ..++.....+..+ ...-..-.++.|..+.++... .+
T Consensus 78 f~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~ 155 (474)
T TIGR03813 78 FLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVD-ESL-AGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIV 155 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-ccc-ccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 999988777653322211111122211111111000 000 0011111111111 111222255666666665443 11
Q ss_pred HHHHHHHhhh----hcccccccc-ccc--C--ccc-ccCCchhHhHhHhhhccccccchhhHHhhcccc-ccchhHHHHH
Q 013930 198 ASVITLGSIV----WTGAFDGVG-FHQ--K--GTL-VNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSYVLLVC 266 (433)
Q Consensus 198 ~~~~~~~~~i----~~~~~~~~~-~~~--~--~~~-~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~ 266 (433)
..++..+.++ ......+.. .+. . .+. .++.+...+. ...|+|.|.+.+....+|+||| |+.+|++..+
T Consensus 156 ~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~ 234 (474)
T TIGR03813 156 GTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIA 234 (474)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhccCcccchhHHHHHH
Confidence 1111111111 110011110 000 0 011 1233333333 4578999999999999999999 6799999999
Q ss_pred HHHHHHHHHHHHhHHHhhcc
Q 013930 267 FFLCTFIYASMAIFGYMMFG 286 (433)
Q Consensus 267 ~~i~~i~y~~~~~~gy~~fg 286 (433)
..++.++|++..+.-....+
T Consensus 235 ~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 235 ALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 99999999887665544443
No 51
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.31 E-value=4.1e-09 Score=106.22 Aligned_cols=232 Identities=10% Similarity=0.110 Sum_probs=130.1
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHchhhCC-CCCCHHHHHHHhcCc
Q 013930 40 RTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWLSLILLFFIAAV-TFYSGLLIKRCMDVDS-NIRSYPDIGDRAFGQ 117 (433)
Q Consensus 40 ~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~g~i~l~~~~~~-~~~s~~~l~~~~~~~~-~~~~y~~l~~~~~G~ 117 (433)
+++|++.++.++..+..+.+ +..+| .+++.|+-.+...++.+++ ..-.+....|.....+ +........++.+|+
T Consensus 2 ~~~~l~~~~~~~~~~~~v~~--~~~~~-~~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G~ 78 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVLA--VYEYP-TFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGE 78 (507)
T ss_pred CCcEeeHHHHHHHHHHHHHH--HHhhH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccCc
Confidence 35679999999888888865 56888 5778886655555554444 3446677788777654 567788888899999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHH-HHHHHhhcccccCCCchHHHHHHHH
Q 013930 118 KGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVI-IALIILPTVWLDNLSLLSYVSASGV 196 (433)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~pl~~~~~l~~l~~~s~~~~ 196 (433)
+.+++..+..++................+.......... .+....+.+. ..+....+...+..+...+++..+.
T Consensus 79 ~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~~~-----~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~ 153 (507)
T TIGR00910 79 RFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFPALN-----EDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGF 153 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhc-----cCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999988777776554322222211122122222111100 0011111111 1111222222455566666554432
Q ss_pred HHH-HHHHHhhh---hccccccccccc----CcccccCC--chhHhHhHhhhccccccchhhHHhhcccc-ccchhHHHH
Q 013930 197 LAS-VITLGSIV---WTGAFDGVGFHQ----KGTLVNWK--GIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSYVLLV 265 (433)
Q Consensus 197 ~~~-~~~~~~~i---~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~ 265 (433)
+.. ++..++++ ......+.+... .....++. +....+...+|+|.|.+......+|+||| |+++|++..
T Consensus 154 ~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~ 233 (507)
T TIGR00910 154 FAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMIL 233 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHH
Confidence 211 11111111 111111111110 11111222 23345556789999999999999999999 679999999
Q ss_pred HHHHHHHHHHHHHh
Q 013930 266 CFFLCTFIYASMAI 279 (433)
Q Consensus 266 ~~~i~~i~y~~~~~ 279 (433)
+..++.++|.+..+
T Consensus 234 ~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 234 LMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999976544
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.24 E-value=8.6e-11 Score=118.04 Aligned_cols=232 Identities=12% Similarity=0.147 Sum_probs=156.6
Q ss_pred HHHHhhhhhhhc-hhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCccchhHHHHHHHH
Q 013930 52 NGVNALSGVGIL-STPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRLIVSVFMNI 129 (433)
Q Consensus 52 ~li~~~iG~GiL-~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~ 129 (433)
..+++++|+|.+ ..+.+..+.|.. .++..++.+++....+..+.|..++.|+...+....++.+|+..+....+..++
T Consensus 5 ~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~ 84 (478)
T PF00324_consen 5 ISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWL 84 (478)
T ss_pred eeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHH
Confidence 346788999984 566788889987 778888999999999999999999988999999999999999999999999888
Q ss_pred HHHHHHHHHHHHhhhhhhhh--ccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHHhhh
Q 013930 130 ELYLVATGFLILEGDNLENL--FPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVITLGSIV 207 (433)
Q Consensus 130 ~~~g~~~~y~i~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i 207 (433)
.............+..++.+ .++... .+.+. . .+..++.+++..+. ..+.|....+........+...+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~-~~~~i~~~~~~~l~-~~gv~~~~~~~~~~~~i~~~~li~~i 158 (478)
T PF00324_consen 85 SYIAAIAAEATAAGSFLQFWGYFPGLPS---TWVWG-I-LIAIIFILLITLLN-LFGVRVSGKIEFILTIIKLIALIAFI 158 (478)
T ss_pred HHHHHHHhhhhhhhhhhccccccccccc---ccccc-c-hhhhhhhhhhhhhh-hhhhhccchHHHHHHHHhhhHhhhhh
Confidence 88777777777777766665 333221 11110 0 12222333322222 23444444333222222222111111
Q ss_pred hcc----ccccccccc-----C-------------cccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccchhHHH
Q 013930 208 WTG----AFDGVGFHQ-----K-------------GTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSYVLL 264 (433)
Q Consensus 208 ~~~----~~~~~~~~~-----~-------------~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~ 264 (433)
... ..++.+.+. + +...++.++..++...+++|.|.+......+|.||| |+++|++.
T Consensus 159 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~ 238 (478)
T PF00324_consen 159 IVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATL 238 (478)
T ss_pred hhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhh
Confidence 111 111111100 0 112236789999999999999999999999999999 57899999
Q ss_pred HHHHHHHHHHHHHHhHHHhhccccc
Q 013930 265 VCFFLCTFIYASMAIFGYMMFGSEV 289 (433)
Q Consensus 265 ~~~~i~~i~y~~~~~~gy~~fg~~~ 289 (433)
.+...+.++|.+.....-...+.+.
T Consensus 239 ~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 239 LSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hhhhhhhhhhhhhhhhcccccCccc
Confidence 9999999999988877666665443
No 53
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.15 E-value=7e-08 Score=93.61 Aligned_cols=251 Identities=11% Similarity=0.031 Sum_probs=142.4
Q ss_pred cCCCCCCCCchhHHHHHHHH---hhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHH
Q 013930 36 YDDSRTTKTSVFKTCFNGVN---ALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIG 111 (433)
Q Consensus 36 ~~~~~~~~~s~~~~~~~li~---~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~ 111 (433)
.+++-+|..+.++.+..-.+ ..-|. .-++.+....+|.. -.-..++++........-|.|.++..|......--+
T Consensus 42 Ykqef~R~fs~~s~fg~sFs~~g~~~~i-~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGgLy~wa 120 (550)
T KOG1289|consen 42 YKQELKREFSLFSIFGISFSLMGLLPGI-ATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGGLYFWA 120 (550)
T ss_pred CchhhhhhhhHHHHHHHHHHHhcchhhh-hhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCcHHHHH
Confidence 45566777776665544332 22221 13455556656655 333467778888888999999999888777777666
Q ss_pred HHhcCccchhHHHHHHH----HHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccc--cCC
Q 013930 112 DRAFGQKGRLIVSVFMN----IELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWL--DNL 185 (433)
Q Consensus 112 ~~~~G~~~~~~~~~~~~----~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~--~~l 185 (433)
.+.-+|+.+.++.+..- +.+.....+-....++.+.......+++ ....+. ....+..++.+..++. ..-
T Consensus 121 a~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~---y~~~~~-~~~~v~~ai~~v~~lln~~p~ 196 (550)
T KOG1289|consen 121 AVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPN---YEPTNY-HQFGVFEAILFVHGLLNSLPT 196 (550)
T ss_pred HHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCC---Ccccce-EeehHHHHHHHHHHHHhcCCc
Confidence 67767776666555433 2222222222223333333333333222 111112 2222232322222222 223
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhccc-cc--ccccccC-------cccccCC----chhHhHhHhhhccccccchhhHHh
Q 013930 186 SLLSYVSASGVLASVITLGSIVWTGA-FD--GVGFHQK-------GTLVNWK----GIPSSISLYAFCYCAHPVFPTLYT 251 (433)
Q Consensus 186 ~~l~~~s~~~~~~~~~~~~~~i~~~~-~~--~~~~~~~-------~~~~~~~----~~~~~~~~~~faf~~~~~i~~i~~ 251 (433)
|.+.+++..++...++.+++..+... .. +.+++.. ....+|+ .+..++-...+.+.|.+...++.+
T Consensus 197 r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aE 276 (550)
T KOG1289|consen 197 RVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAE 276 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHH
Confidence 56777777776665554444333222 11 1112211 1123343 355677888999999999999999
Q ss_pred hcccc-ccchhHHHHHHHHHHHHHHHHHhHHHhhccccchh
Q 013930 252 SMKKK-HQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQS 291 (433)
Q Consensus 252 ~m~~p-~~~~~~~~~~~~i~~i~y~~~~~~gy~~fg~~~~~ 291 (433)
|.||+ ++.+|++..+..+..++=..+-+.-...-+++.+.
T Consensus 277 E~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~ 317 (550)
T KOG1289|consen 277 ETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDA 317 (550)
T ss_pred HhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 99998 67899999999888888777766666666654433
No 54
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.06 E-value=2.6e-09 Score=89.59 Aligned_cols=216 Identities=16% Similarity=0.160 Sum_probs=150.1
Q ss_pred CCCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhh------------CC-----
Q 013930 41 TTKTSVFKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDV------------DS----- 102 (433)
Q Consensus 41 ~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~------------~~----- 102 (433)
.+..|-.-....+.|.++|+|-|++|.+|+.+||. ++.++.+.+++++.+...++++... ..
T Consensus 9 gelysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeedd 88 (319)
T KOG3832|consen 9 GELYSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDD 88 (319)
T ss_pred cchhhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccc
Confidence 33455666778889999999999999999999999 9999999999999999988886321 00
Q ss_pred ---------------------------------------CCCCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhh
Q 013930 103 ---------------------------------------NIRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEG 143 (433)
Q Consensus 103 ---------------------------------------~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~ 143 (433)
.....+|++...|.|.+-.+..+.++++++|-...|.....
T Consensus 89 d~stasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavp 168 (319)
T KOG3832|consen 89 DESTASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVP 168 (319)
T ss_pred cccccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 01145778888899999999999999999999999988776
Q ss_pred hhhhhhccCCcc------------ccccccc-------CCchhHHHHHH-HHHhhcccccCCCchHHHHHHHHHHHHHHH
Q 013930 144 DNLENLFPNTAI------------ELGGFTL-------GGKQCFVVIIA-LIILPTVWLDNLSLLSYVSASGVLASVITL 203 (433)
Q Consensus 144 ~~l~~~~~~~~~------------~~~~~~~-------~~~~~~~~i~~-~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 203 (433)
....+....... +.....+ +..+++++++. ++.+|+.+ -+++..+.+..+....-+...
T Consensus 169 fs~m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf-~diqktk~iqiltslmrw~~~ 247 (319)
T KOG3832|consen 169 FSAMNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTF-ADIQKTKHIQILTSLMRWAAF 247 (319)
T ss_pred hHhhhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeE-eccccchhHHHHHHHHHHHhc
Confidence 665554322111 0000011 11345555554 45678874 477778888887777777665
Q ss_pred Hhhhhcccccccc--cccCcccccCCchhHhHhHhhhccccccchhhHHhhccccc
Q 013930 204 GSIVWTGAFDGVG--FHQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKH 257 (433)
Q Consensus 204 ~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~ 257 (433)
+..+..+..+... ....++...+-++-+.++...|+|.+|++.|.....++.+.
T Consensus 248 ~~g~~l~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 248 ILGISLATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred cchhhhhhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 5544443222111 01112233455677888999999999999999988888663
No 55
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.95 E-value=4.4e-07 Score=82.63 Aligned_cols=218 Identities=20% Similarity=0.191 Sum_probs=136.0
Q ss_pred hHHHHHHHHhhhhhhhchhHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCccchhHH
Q 013930 47 FKTCFNGVNALSGVGILSTPYA---LASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRLIV 123 (433)
Q Consensus 47 ~~~~~~li~~~iG~GiL~lP~a---~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~ 123 (433)
.+..+..+.+++|+|.-+=--. |..-|+-|....++.+++-..++..+.+..++. +..+|.|.-++.+||+..++.
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f-~a~~y~~~~~~v~~~~~~ki~ 84 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKF-NATSYREILKYVSGPKFAKII 84 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-cccchHHHHHHHhhHHHHHHH
Confidence 4556777889999996543333 345666688888889999999999899887765 889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHH-HHHHHHHhhcccccCCCchHHHHHHHHHHHHHH
Q 013930 124 SVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFV-VIIALIILPTVWLDNLSLLSYVSASGVLASVIT 202 (433)
Q Consensus 124 ~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 202 (433)
|..+.++.++.+...+...++.+.+.+... .++- ++....+..+.+.++.+.+..++.+-+-.....
T Consensus 85 d~~iif~lf~~~vVM~AGags~~~e~~~lP------------~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~ 152 (349)
T COG3949 85 DIIIIFFLFSTAVVMLAGAGSLLEEMFGLP------------YWIGALIIILLVLILLFLGRVEGIITVNGIITPFLIII 152 (349)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHhCcc------------HHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHH
Confidence 999999999999998888887887766431 1333 333444444444666776665554433322222
Q ss_pred HHhhhhcccc-c-ccccccC-cccccCCchhHhHhHhhhcc-ccccchhhHHhhccccccchhHHHHHHHHHHHHHHHHH
Q 013930 203 LGSIVWTGAF-D-GVGFHQK-GTLVNWKGIPSSISLYAFCY-CAHPVFPTLYTSMKKKHQFSYVLLVCFFLCTFIYASMA 278 (433)
Q Consensus 203 ~~~~i~~~~~-~-~~~~~~~-~~~~~~~~~~~~~~~~~faf-~~~~~i~~i~~~m~~p~~~~~~~~~~~~i~~i~y~~~~ 278 (433)
...+...... + +...+.. ....+|.. .+.+-..+.. .+...+.++-++|+++|...+....+-.+.+++..+.-
T Consensus 153 l~~v~~~~~f~~~~~~a~~~~~~~~~W~~--~~~~Y~alNi~~~~avLv~lg~~~~~~~~~~~g~l~gglIlgvl~~l~n 230 (349)
T COG3949 153 LVLVTLSFQFTNLGNAAQIVLTKQGNWKA--SAVGYGALNILVAVAVLVPLGGRMESRKVSGIGGLIGGLILGVLLFLIN 230 (349)
T ss_pred HHHHHHHHHHhhccchhhhcCCcCCChHH--HHHhhhhHHHHhHhHhhhhhcccccccchhhhhhhhhhHHHHHHHHHHH
Confidence 1111111111 1 1111111 11223322 2222222222 24455577779999998777766666666555555444
Q ss_pred h
Q 013930 279 I 279 (433)
Q Consensus 279 ~ 279 (433)
.
T Consensus 231 l 231 (349)
T COG3949 231 L 231 (349)
T ss_pred H
Confidence 4
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.61 E-value=2.7e-05 Score=77.41 Aligned_cols=337 Identities=12% Similarity=0.028 Sum_probs=177.0
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhchhHHHHHh--hhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhc
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGILSTPYALAS--GGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAF 115 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~--~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~ 115 (433)
+++|+.++++-+..-.+..+...-+.+...... .++. +++..++...+...-.........| ..-++.-+.|..|
T Consensus 9 ~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r--~Gl~~~v~sR~~F 86 (442)
T TIGR00800 9 EEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAK--YGLPFPVLSRASF 86 (442)
T ss_pred cccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHH--hCCCcchhhhhhh
Confidence 344455777666666666665555554444333 3344 5555555444444444444444343 3367788899999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccc--cC-CchhHHHHHHHHHhhcccccCCCchHHHH
Q 013930 116 GQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFT--LG-GKQCFVVIIALIILPTVWLDNLSLLSYVS 192 (433)
Q Consensus 116 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~--~~-~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 192 (433)
|+++..+..++..+...|.........++.+..+++...+...... .+ ......+++..+.+++......+......
T Consensus 87 G~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~~ 166 (442)
T TIGR00800 87 GIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLFE 166 (442)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999999999988888888877776654322100000 00 01223334445555544455555555555
Q ss_pred HHHHHHHHHHHHhhhhcccccc-c-ccc-cC---cccccCCchhHhHhHhhhcc-ccccchhhHHhhccccccchhHHHH
Q 013930 193 ASGVLASVITLGSIVWTGAFDG-V-GFH-QK---GTLVNWKGIPSSISLYAFCY-CAHPVFPTLYTSMKKKHQFSYVLLV 265 (433)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~-~-~~~-~~---~~~~~~~~~~~~~~~~~faf-~~~~~i~~i~~~m~~p~~~~~~~~~ 265 (433)
..+....+..+...++.....+ . +.. .+ ........+..++...+=.+ ..-.+.+.+.+..|++|+-.+....
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~~~~~~~~ 246 (442)
T TIGR00800 167 WLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKTAIWGQFL 246 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccchHHHHHH
Confidence 5555444444333333322111 1 111 11 11112234445555433222 4445779999999998877777888
Q ss_pred HHHHHHHHHHHHHhHHHhh----ccccchh--HhhhcCCCCchhH--H---HHHHHHHHHHh-hhhhhhhhhHHHHHHHH
Q 013930 266 CFFLCTFIYASMAIFGYMM----FGSEVQS--QITLNLPTSKLSS--R---LAIYTTLVNPI-AKYALMVTPIVNSIKMR 333 (433)
Q Consensus 266 ~~~i~~i~y~~~~~~gy~~----fg~~~~~--~~l~~~~~~~~~~--~---i~~~~~~~~~~-~s~p~~~~~~~~~~~~~ 333 (433)
++.........+|..+-.. +|+...+ +....+....... . ...+..++..+ .+--...++....+.+.
T Consensus 247 ~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ys~~l~l~~l 326 (442)
T TIGR00800 247 ALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNISANSYSAGLDIAAL 326 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHh
Confidence 8888888888888877765 7654322 3333333221110 0 11112212222 34445667777777777
Q ss_pred cccCCCCCCceehhhHHHHHHHHHHHhh-----ccchHHHHHHHhhhhhhhhh
Q 013930 334 ASTQYSKRPYSLLISTPLVISTVIVALV-----VPFFGYLMTLVGAFLSVTAS 381 (433)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~-----~~~~~~v~~l~G~~~~~~~~ 381 (433)
+++..+ .+|. ..+..++..+++.. .+.+.+++++.|...+....
T Consensus 327 ~~~~~~--~~r~--~~i~~ii~~~~~~~~~~~~~~~~~~FL~~lg~~~~P~~g 375 (442)
T TIGR00800 327 LPKYIK--IKRG--SLICAIIALLICPWNLYNSSSKFTTFLSSIGGFLSPIAG 375 (442)
T ss_pred CcCccc--cchH--HHHHHHHHHHhccHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 754322 2231 11222222222211 22456677777776665443
No 57
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.61 E-value=6.6e-05 Score=72.71 Aligned_cols=266 Identities=14% Similarity=0.069 Sum_probs=153.9
Q ss_pred CCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccC
Q 013930 105 RSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDN 184 (433)
Q Consensus 105 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 184 (433)
.+-..+++..||.++.++..+.+.+.+.|......+..++-..+. +..+ ...+.++..+++...+.. .
T Consensus 81 lpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~~~~----------~~~~ili~g~l~~l~~if-G 148 (442)
T COG1457 81 LPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-TGLP----------VWAGILIIGVLMTLVTIF-G 148 (442)
T ss_pred CChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-CCCc----------HHHHHHHHHHHHHHHHHH-h
Confidence 344556789999999999999999999999999988888862222 1111 224444444444444422 4
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhcccccc--cccccCcccccCCchhHhHhHhhhccccc-cchhhHHhhccccc--cc
Q 013930 185 LSLLSYVSASGVLASVITLGSIVWTGAFDG--VGFHQKGTLVNWKGIPSSISLYAFCYCAH-PVFPTLYTSMKKKH--QF 259 (433)
Q Consensus 185 l~~l~~~s~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~faf~~~-~~i~~i~~~m~~p~--~~ 259 (433)
.+.+..++..+.....+.+...++....+. .+......+.++.++..+++...=.+... +....+.+.+|+|+ |.
T Consensus 149 ~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~ 228 (442)
T COG1457 149 YRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKA 228 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHH
Confidence 445555555554444444444443332211 11112222455566666666655555443 44578888888887 66
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHhhccccc-hhHhhhcCCCCchhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcccCC
Q 013930 260 SYVLLVCFFLCTFIYASMAIFGYMMFGSEV-QSQITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQY 338 (433)
Q Consensus 260 ~~~~~~~~~i~~i~y~~~~~~gy~~fg~~~-~~~~l~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~ 338 (433)
-.....+......+-...|...-.+-|+.. ..+....+.. ....+.+...+..+.+--..+|+..-.+.+..++
T Consensus 229 ~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~-- 303 (442)
T COG1457 229 FLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFANIIPK-- 303 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhh--
Confidence 667777778888888888888888888766 3333333332 2234555566666666666777776666666533
Q ss_pred CCCCceehhhHHHHHHHHHHHh----hccchHHHHHHHhhhhhhhhhhhhhhHHHH
Q 013930 339 SKRPYSLLISTPLVISTVIVAL----VVPFFGYLMTLVGAFLSVTASVILPCLCYL 390 (433)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~ia~----~~~~~~~v~~l~G~~~~~~~~~ilP~~~~l 390 (433)
-+|..+.+...+. ..+++|. +..+++..+.+.|+.... ..-++-+=.++
T Consensus 304 l~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P-~~~I~iad~~~ 356 (442)
T COG1457 304 LSKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPP-WGGVMIADYFI 356 (442)
T ss_pred hhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 1222232222221 2233333 345688888888776654 33344443443
No 58
>PRK11375 allantoin permease; Provisional
Probab=98.48 E-value=0.00019 Score=71.94 Aligned_cols=335 Identities=11% Similarity=0.033 Sum_probs=162.3
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhchhHHHHHh--hhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhc
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGILSTPYALAS--GGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAF 115 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~--~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~ 115 (433)
+++|+-++++-+..-.+..+..+.+.+-.+.-. .++. +++..++...+...-+........+ ..-++.-+.|..|
T Consensus 22 ~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~--~Gl~~~v~sR~sF 99 (484)
T PRK11375 22 QSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSK--YGVPFAMILRASY 99 (484)
T ss_pred ccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHhcccccc--cCCChhHhHHHHH
Confidence 345556666655555544444333222211111 2333 5555554444444444444444333 3468899999999
Q ss_pred CccchhHHHHHHH-HHHHHHHHHHHHHhhhhhhhhc----cCCcc---cccccccCCc-hhHHHHHHHHHhhcccccCCC
Q 013930 116 GQKGRLIVSVFMN-IELYLVATGFLILEGDNLENLF----PNTAI---ELGGFTLGGK-QCFVVIIALIILPTVWLDNLS 186 (433)
Q Consensus 116 G~~~~~~~~~~~~-~~~~g~~~~y~i~~~~~l~~~~----~~~~~---~~~~~~~~~~-~~~~~i~~~~~~pl~~~~~l~ 186 (433)
|++|.++..+... +...+.........++.+..++ +.... +.+....+.. .....++.++..++. ....+
T Consensus 100 G~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~-~~g~~ 178 (484)
T PRK11375 100 GVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIG-FGGGK 178 (484)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHH-HcCHH
Confidence 9999888888764 4555555555555666655433 22111 1110111111 122234445555555 45566
Q ss_pred chHHHHHHHHHHHHHHHHhhhhccccc-ccc--cccCc--ccc---cCCchhHhHhHhhhccc-cccchhhHHhhccccc
Q 013930 187 LLSYVSASGVLASVITLGSIVWTGAFD-GVG--FHQKG--TLV---NWKGIPSSISLYAFCYC-AHPVFPTLYTSMKKKH 257 (433)
Q Consensus 187 ~l~~~s~~~~~~~~~~~~~~i~~~~~~-~~~--~~~~~--~~~---~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~p~ 257 (433)
.++++...+........+.+.+..... +.+ .+..+ ... ....+..++...+=++. ...+.|.+.+..|++|
T Consensus 179 ~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~~ 258 (484)
T PRK11375 179 VLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFR 258 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCChh
Confidence 666666655444433322222111111 111 11101 100 01123344433333443 4457789999999888
Q ss_pred cchhHHHHHHHHHHHHHHHHHhHH----Hhhccccch--hHhhhcCCCCchhHHHHHHHHHHHHhhh-hhhhhhhHHHHH
Q 013930 258 QFSYVLLVCFFLCTFIYASMAIFG----YMMFGSEVQ--SQITLNLPTSKLSSRLAIYTTLVNPIAK-YALMVTPIVNSI 330 (433)
Q Consensus 258 ~~~~~~~~~~~i~~i~y~~~~~~g----y~~fg~~~~--~~~l~~~~~~~~~~~i~~~~~~~~~~~s-~p~~~~~~~~~~ 330 (433)
+..+....++.+...+...+|+.. ...+|+... .+++..+... ....++.+..++..+.+ .....++.-..+
T Consensus 259 ~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~~-~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l 337 (484)
T PRK11375 259 AQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDSL-FASFFAVLVILMTTISTNATGNIIPAGYQI 337 (484)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHhhcccHHHHH
Confidence 777776667777666655555443 345554332 3333443221 22223333444444444 335777888888
Q ss_pred HHHcccCCCCCCceehhhHHHHHHHHHHHhh--c---cchHHHHHHHhhhhhhhhh
Q 013930 331 KMRASTQYSKRPYSLLISTPLVISTVIVALV--V---PFFGYLMTLVGAFLSVTAS 381 (433)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~--~---~~~~~v~~l~G~~~~~~~~ 381 (433)
.+.+++.-+. +|. ..+..++..+++.. . ..+..++++.|++.++...
T Consensus 338 ~~l~pk~i~~--~~~--~~i~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~g 389 (484)
T PRK11375 338 AALAPTKLTY--KNG--VLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIG 389 (484)
T ss_pred HHhCcCccch--hhH--HHHHHHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 8888644222 121 11111222222222 1 2277888888877766544
No 59
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.47 E-value=0.00024 Score=69.22 Aligned_cols=286 Identities=10% Similarity=0.031 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcc
Q 013930 76 SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAI 155 (433)
Q Consensus 76 g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~ 155 (433)
.+...++...+...-.-.......+ ..-++.-+.|..||++|.++..+...+...|.-.......++.+..+.+...+
T Consensus 31 ai~aiilG~~i~~~~~~l~~~~G~~--~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~ 108 (386)
T TIGR02358 31 GLLAILLGHLVGVLLLSAAGVIGAD--TGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFG 108 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc--cCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444333333333333333332 34688999999999999999999988888888888888888888887754211
Q ss_pred cccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHHhhhhccccc-ccccccCcccccCCchhHhHh
Q 013930 156 ELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVITLGSIVWTGAFD-GVGFHQKGTLVNWKGIPSSIS 234 (433)
Q Consensus 156 ~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 234 (433)
. ++...+..+..++..+.+ ....+.++++............+...+..... +.+.... ++.+ ..+..++.
T Consensus 109 ~------~~~~~~~~i~~~l~~~~~-~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~~~ 179 (386)
T TIGR02358 109 E------ESPMLWILIVGILVTLWL-LSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWN-RAGD-MSFAVAVE 179 (386)
T ss_pred C------CchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcC-CCCC-ccHHHHHH
Confidence 1 011233334444444444 34566677777666665555444433221111 1110000 1111 23333332
Q ss_pred Hhhhc-cccccchhhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHhhccccchhHhhhcCCCCchhHHHHHHHHHH
Q 013930 235 LYAFC-YCAHPVFPTLYTSMKKKHQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQITLNLPTSKLSSRLAIYTTLV 313 (433)
Q Consensus 235 ~~~fa-f~~~~~i~~i~~~m~~p~~~~~~~~~~~~i~~i~y~~~~~~gy~~fg~~~~~~~l~~~~~~~~~~~i~~~~~~~ 313 (433)
...-. -......+.+.+..|+|||..+....+..+...+..++|.....+.++....+...... .. ....+...+
T Consensus 180 ~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~g---~~-~~~~~~~~l 255 (386)
T TIGR02358 180 LVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGAG---LG-IPALLIILL 255 (386)
T ss_pred HHHHHHHHHHHHccchhhhcCCCcceehHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcc---HH-HHHHHHHHH
Confidence 22211 12233468888888888888888888999999999999988877777643333333221 11 123334444
Q ss_pred HHhhhhhhhhhhHHHHHHHHcccCCCCCCceehhhHHHHHHHHHHHhh--ccchHHHHHHHhhhhhhhhh
Q 013930 314 NPIAKYALMVTPIVNSIKMRASTQYSKRPYSLLISTPLVISTVIVALV--VPFFGYLMTLVGAFLSVTAS 381 (433)
Q Consensus 314 ~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~--~~~~~~v~~l~G~~~~~~~~ 381 (433)
..+.+-....++.-..+.+.+++-. ++++.. +..++...++.. ...+..++++.|....+...
T Consensus 256 ~~~~~n~~N~ys~~l~l~~l~~~~~--~~~~~~---i~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~g 320 (386)
T TIGR02358 256 STVTTTFMDIYSAAISTGNLLPRLK--VKHLAI---GVGVLGTLIALLFPVDKYENFLLLIGSVFAPLYA 320 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhc--chHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556677777777777764322 122211 122222333322 24577777777776665443
No 60
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.44 E-value=0.0012 Score=66.30 Aligned_cols=234 Identities=12% Similarity=0.026 Sum_probs=131.0
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhh-chhHHHHHhhhHH-HHHHHH--HHHHHH-HHHHHHHHHchhhCCCCCCHHHHHHH
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGI-LSTPYALASGGWL-SLILLF--FIAAVT-FYSGLLIKRCMDVDSNIRSYPDIGDR 113 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~Gi-L~lP~a~~~~G~~-g~i~l~--~~~~~~-~~s~~~l~~~~~~~~~~~~y~~l~~~ 113 (433)
...|+.+++.....+..+.+|++. ++.|....+.|+. ...... ..+.+. ..-...+.+..++ .+..|.+|+-++
T Consensus 37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~T~~e~l~~ 115 (471)
T TIGR02119 37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRK-YNAITINDVLKA 115 (471)
T ss_pred EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCccHHHHHHH
Confidence 467889999999999999998876 6788777777753 111110 111111 1112223333344 478999999999
Q ss_pred hcCccc-hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHH
Q 013930 114 AFGQKG-RLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVS 192 (433)
Q Consensus 114 ~~G~~~-~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 192 (433)
-||++. +.+..+...+..++...+.+...+..++.+++. + ....+++..+++........++...+..
T Consensus 116 Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi-~----------~~~~iii~~~iv~iYt~~GG~~av~~td 184 (471)
T TIGR02119 116 RYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL-S----------YLTALFIFSSSVLIYTTFGGFRAVALTD 184 (471)
T ss_pred HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C----------HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999664 667777777777777777777777777777642 1 1233444445555566677888888887
Q ss_pred HHHHHHHHHHHHhhhhccccc--ccc-------cccCc--ccc---cC--CchhHhHh-HhhhccccccchhhHHhhccc
Q 013930 193 ASGVLASVITLGSIVWTGAFD--GVG-------FHQKG--TLV---NW--KGIPSSIS-LYAFCYCAHPVFPTLYTSMKK 255 (433)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~--~~~-------~~~~~--~~~---~~--~~~~~~~~-~~~faf~~~~~i~~i~~~m~~ 255 (433)
.+-.+..+...+.+.+..... +.+ ...+. .+. ++ ..+...+. ...++..+.+....-.-..|+
T Consensus 185 ~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~aak~ 264 (471)
T TIGR02119 185 AIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRCMSYKD 264 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHHHhcCC
Confidence 776655544333322221111 110 00000 011 11 01111111 122233344433333345566
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhHHHhh
Q 013930 256 KHQFSYVLLVCFFLCTFIYASMAIFGYMM 284 (433)
Q Consensus 256 p~~~~~~~~~~~~i~~i~y~~~~~~gy~~ 284 (433)
+|+.+|....+..+...++....+.|..+
T Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~G~~a 293 (471)
T TIGR02119 265 SKAMHRAMIIGTIVVGIIMLGMHLAGVLG 293 (471)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHHHHHHhh
Confidence 67788888887777666666666666444
No 61
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.41 E-value=0.00048 Score=66.26 Aligned_cols=217 Identities=15% Similarity=0.183 Sum_probs=119.8
Q ss_pred HHHHHhhhhhhhchhHHHHH-hhh--HH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCccchhHHHHH
Q 013930 51 FNGVNALSGVGILSTPYALA-SGG--WL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRLIVSVF 126 (433)
Q Consensus 51 ~~li~~~iG~GiL~lP~a~~-~~G--~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~ 126 (433)
+.+...-+|+|.|-.|-... ++| |. +.+..++.++..-....+ +..+ ...+|.++.++ +||+...+..+.
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~--~gG~~~~l~~~-~g~~f~~lf~~~ 75 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALAL--VGGGYDSLSAR-IGKVFGILFTVI 75 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeee--cCCCHHHHHHH-hChHHHHHHHHH
Confidence 35677889999999997765 466 44 666666666655544443 2222 22688888876 567777777666
Q ss_pred HHHHHHHH-------HHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHHH
Q 013930 127 MNIELYLV-------ATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLAS 199 (433)
Q Consensus 127 ~~~~~~g~-------~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 199 (433)
+++..--. .++|-.. +..+++..... . ......+++..+.+.++ .|.-|...++..+.+...
T Consensus 76 ~~l~iGP~~aiPRtaa~s~e~~----i~p~~~~~~~~---~---~l~i~siiff~i~~~l~-~~~~k~~~~iGk~LTP~l 144 (378)
T TIGR00796 76 LYLTIGPLFAIPRTATVSFEMG----IAPLLHSPTSL---L---ALFIFSLIFFAVVLLLS-LNPSKLIDRVGKFLTPAL 144 (378)
T ss_pred HHHHHHhchhhhHHHHHHHHHH----HHhccCcccch---H---HHHHHHHHHHHHHHHHH-cCcccHHHHhHHHHHHHH
Confidence 55433211 2223222 34444331100 0 01123333334444444 556666666666666666
Q ss_pred HHHHHhhhhcccccccc-cccCcccccC-CchhHhHhHhhhccc-------cccchhhHHh-hccccccc-hhHHHH---
Q 013930 200 VITLGSIVWTGAFDGVG-FHQKGTLVNW-KGIPSSISLYAFCYC-------AHPVFPTLYT-SMKKKHQF-SYVLLV--- 265 (433)
Q Consensus 200 ~~~~~~~i~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~faf~-------~~~~i~~i~~-~m~~p~~~-~~~~~~--- 265 (433)
++.+..++..++....+ ...+..+..- ..+.+++-...+++. |...+..+.+ |+||||+. ++....
T Consensus 145 Li~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~i 224 (378)
T TIGR00796 145 LVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLI 224 (378)
T ss_pred HHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 66666666665543222 1111111111 346677777777777 7777888888 99998544 434333
Q ss_pred HHHHHHHHHHHHHhHHHhh
Q 013930 266 CFFLCTFIYASMAIFGYMM 284 (433)
Q Consensus 266 ~~~i~~i~y~~~~~~gy~~ 284 (433)
+......+|.-.+.+|...
T Consensus 225 a~i~l~~vY~~L~~lGa~~ 243 (378)
T TIGR00796 225 AAVLLAFIYLSLFYLGATS 243 (378)
T ss_pred HHHHHHHHHHHHHHHhcCc
Confidence 4445556666666666543
No 62
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=98.38 E-value=0.00063 Score=66.10 Aligned_cols=147 Identities=17% Similarity=0.144 Sum_probs=87.8
Q ss_pred CCCCchhHHHHHHHHhhhhhh-hchhHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHchhhCCCCCCH-----HHH
Q 013930 41 TTKTSVFKTCFNGVNALSGVG-ILSTPYALASGGWLS----LILLFFIAAVTFYSGLLIKRCMDVDSNIRSY-----PDI 110 (433)
Q Consensus 41 ~~~~s~~~~~~~li~~~iG~G-iL~lP~a~~~~G~~g----~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y-----~~l 110 (433)
+++.|.+|+.+..+.+++|+| ++++|.+.+..|.-+ ++..++.+...+.-..+..+. ++++++.+| ..+
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~y-r~~~~~g~~~GGP~yyi 122 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKY-RERDADGVFRGGPMYYI 122 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHe-eeeCCCCCEecChHHHH
Confidence 356999999999999999998 999999977777435 333344333333333333443 323344557 888
Q ss_pred HHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHH
Q 013930 111 GDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSY 190 (433)
Q Consensus 111 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 190 (433)
-+...|||...+..+.+..++...+.......++.+++.++ .+ .+...++..++.... ....+|.+..
T Consensus 123 ~~gl~~k~lg~lfa~~~i~~f~~~~~~Q~nsi~~~~~~~~~-~~----------~~v~~i~l~~l~~~v-i~GGik~Ia~ 190 (425)
T TIGR00835 123 KKGLGMRWLAVLFAVFLIASFGIGNMVQANAIASALSNAFN-VP----------KLVTGIVLTVLTALI-IFGGLKRIAK 190 (425)
T ss_pred HHHhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcC-Cc----------HHHHHHHHHHHHHHH-HhcCchHHHH
Confidence 88888888777777763333333345555555566653321 10 112222223333322 3567888888
Q ss_pred HHHHHHHHHH
Q 013930 191 VSASGVLASV 200 (433)
Q Consensus 191 ~s~~~~~~~~ 200 (433)
++...+....
T Consensus 191 v~~~lvP~m~ 200 (425)
T TIGR00835 191 ISSVVVPFMA 200 (425)
T ss_pred HHHHHHHHHH
Confidence 8776655443
No 63
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.36 E-value=0.00097 Score=67.07 Aligned_cols=145 Identities=15% Similarity=0.104 Sum_probs=104.8
Q ss_pred CCCCCCchhHHHHHHHHhhhh-hhhchhHHHHHhhhHH-HHHHHH---HHHHHHHHHHHHHHHchhhCCCCCCHHHHHHH
Q 013930 39 SRTTKTSVFKTCFNGVNALSG-VGILSTPYALASGGWL-SLILLF---FIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDR 113 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG-~GiL~lP~a~~~~G~~-g~i~l~---~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~ 113 (433)
...|+.+.+-..+....+.++ ..++++|....+.|+. .++... ...+...+....+.+.. ++++..|..|+-++
T Consensus 35 ~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~~ 113 (493)
T COG0591 35 LGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLEA 113 (493)
T ss_pred ccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHHH
Confidence 467778888777777888887 7889999999988976 444333 34444455566666666 55688999999999
Q ss_pred hcC-ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHH
Q 013930 114 AFG-QKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVS 192 (433)
Q Consensus 114 ~~G-~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 192 (433)
=|| |+.+.+..+...+...+.+...+...+..++..+. .+.. ....+...++......-.++...+..
T Consensus 114 Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~~~----------~~~~~~~~~v~~Yt~~gG~~av~~Td 182 (493)
T COG0591 114 RFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-ISYV----------TGILIGALIVALYTFLGGLRAVVWTD 182 (493)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCHH----------HHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 999 88999999999999999999999999999966665 3311 23333344444444455666666655
Q ss_pred HHH
Q 013930 193 ASG 195 (433)
Q Consensus 193 ~~~ 195 (433)
.+-
T Consensus 183 ~iq 185 (493)
T COG0591 183 FIQ 185 (493)
T ss_pred HHH
Confidence 544
No 64
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.34 E-value=0.00043 Score=68.14 Aligned_cols=149 Identities=10% Similarity=0.068 Sum_probs=100.2
Q ss_pred CCCCchhHHHHHHHHhhhhhhh-chhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCcc-
Q 013930 41 TTKTSVFKTCFNGVNALSGVGI-LSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQK- 118 (433)
Q Consensus 41 ~~~~s~~~~~~~li~~~iG~Gi-L~lP~a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~- 118 (433)
.|+.+++...+.+..+.+|++. ++.|....+.|+.++...+..........+...+..++ .+..|..|+.++-||++
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFIN-NGAYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCchhHHHHHHhCchH
Confidence 5788888888888888887765 78888777778653322222222333344445554444 47899999999999984
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHH
Q 013930 119 GRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLA 198 (433)
Q Consensus 119 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 198 (433)
.+.+..+...+..+......+...+..++.+.+. + .....++..+++........++...+...+-.+.
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi-~----------~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIELITGL-D----------LYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-h----------HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 6666667777777788888888888888877642 1 1233444455555566677888888877776555
Q ss_pred HHH
Q 013930 199 SVI 201 (433)
Q Consensus 199 ~~~ 201 (433)
.+.
T Consensus 150 ~~~ 152 (407)
T TIGR00813 150 MIL 152 (407)
T ss_pred HHH
Confidence 443
No 65
>PRK12488 acetate permease; Provisional
Probab=98.32 E-value=0.0034 Score=64.11 Aligned_cols=151 Identities=11% Similarity=0.080 Sum_probs=100.2
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhh-chhHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHchhhCCCCCCHHHHHHHhcC
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGI-LSTPYALASGGWLSLILLFFIAAVTFY-SGLLIKRCMDVDSNIRSYPDIGDRAFG 116 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~Gi-L~lP~a~~~~G~~g~i~l~~~~~~~~~-s~~~l~~~~~~~~~~~~y~~l~~~~~G 116 (433)
-..|+.+++...+.+..+.++++. ++.|....+.|+.+....+.. .+.+. ....+.+-.++. +..|.+|.-++=||
T Consensus 64 laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~g~-~~g~~~~~~~~a~~lr~~-g~~T~~d~l~~Rf~ 141 (549)
T PRK12488 64 TAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLYALGV-LAGWPIILFLIAERLRNL-GKYTFADVVSYRLA 141 (549)
T ss_pred eeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHH-HHHHHHHHHHHHHHHHHC-CCcchHHHHHHHcC
Confidence 347789999999999998888776 789988778887643322211 11211 223344444443 67899999988887
Q ss_pred -ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHH
Q 013930 117 -QKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASG 195 (433)
Q Consensus 117 -~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 195 (433)
|+.|.+..+...+.............+..++.+++. + ....+++..+++...+..-.++...+...+-
T Consensus 142 s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi-~----------~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ 210 (549)
T PRK12488 142 QGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI-S----------YLYAVVIVGALMVLYVTFGGMLATTWVQIIK 210 (549)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C----------HHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 568888887777777777777777788777777532 1 1233444555555666677888888877776
Q ss_pred HHHHHHH
Q 013930 196 VLASVIT 202 (433)
Q Consensus 196 ~~~~~~~ 202 (433)
.+..+..
T Consensus 211 ~~im~~~ 217 (549)
T PRK12488 211 AVLLLSG 217 (549)
T ss_pred HHHHHHH
Confidence 5555443
No 66
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.27 E-value=0.00063 Score=66.94 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=86.8
Q ss_pred CCCCchhHHHHHHHHhhhhhhh-chhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCccc
Q 013930 41 TTKTSVFKTCFNGVNALSGVGI-LSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKG 119 (433)
Q Consensus 41 ~~~~s~~~~~~~li~~~iG~Gi-L~lP~a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 119 (433)
.|+.+++...+.+..+.+|++. ++.|....+.|+.+....+............+.+-.++ .+..|..|+-++-||++.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~T~~e~~~~Ryg~~~ 83 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRR-SGAVTIPEYLEKRYGSKA 83 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHH-TT--SHHHHHHHHT-HHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcc-cchhhhhhhhhhhcCCch
Confidence 5788899999999998888754 78888888888653222222222223333444544444 488999999999999988
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHH
Q 013930 120 --RLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVL 197 (433)
Q Consensus 120 --~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 197 (433)
+.+..+...+.........+...+..++.+.+. + .....++..+++......-.++...+...+-.+
T Consensus 84 ~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi-~----------~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 84 LLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI-P----------YNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp -HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred hhhhhcccccchhhhhhhhccccccccchhhccch-h----------hhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 666655566666677778888888888877642 2 124444555566666667777777766665554
Q ss_pred HHHH
Q 013930 198 ASVI 201 (433)
Q Consensus 198 ~~~~ 201 (433)
..++
T Consensus 153 i~~~ 156 (406)
T PF00474_consen 153 IMII 156 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 67
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.21 E-value=0.006 Score=61.49 Aligned_cols=233 Identities=11% Similarity=0.027 Sum_probs=126.4
Q ss_pred CCCCCCchhHHHHHHHHhhhhhh-hchhHHHHHhhhHHH-HHHH--HHHHH-HHHHHHHHHHHchhhCCCCCCHHHHHHH
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVG-ILSTPYALASGGWLS-LILL--FFIAA-VTFYSGLLIKRCMDVDSNIRSYPDIGDR 113 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~G-iL~lP~a~~~~G~~g-~i~l--~~~~~-~~~~s~~~l~~~~~~~~~~~~y~~l~~~ 113 (433)
...|+.+++...+.+..+.+|++ .++.|....+.|+.. +... ...+. ...+....+.+..++. +..|..|+-++
T Consensus 38 ~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~l~~ 116 (483)
T PRK09442 38 LGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY-NAVTLNDMLRA 116 (483)
T ss_pred eeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHH
Confidence 45778899988888888887774 478887666677541 1111 11111 1112233334444544 88999999999
Q ss_pred hcCccc-hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHH
Q 013930 114 AFGQKG-RLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVS 192 (433)
Q Consensus 114 ~~G~~~-~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 192 (433)
-||++. +.+..+...+..+......+...+..++.+++. + ....+++..+++...+....++...+..
T Consensus 117 Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi-~----------~~~~iii~~~iv~iYt~~GGl~av~~TD 185 (483)
T PRK09442 117 RYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGI-S----------YETGLLIFGITVALYTAFGGFRAVVLTD 185 (483)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C----------HHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 998664 555555555555666666777777777776642 1 1233444455556666678888888777
Q ss_pred HHHHHHHHHHHHhhhhcccc--ccc-------cccc-----CcccccCCchhHhH---hHhhhccccccchhhHHhhccc
Q 013930 193 ASGVLASVITLGSIVWTGAF--DGV-------GFHQ-----KGTLVNWKGIPSSI---SLYAFCYCAHPVFPTLYTSMKK 255 (433)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~--~~~-------~~~~-----~~~~~~~~~~~~~~---~~~~faf~~~~~i~~i~~~m~~ 255 (433)
.+-.+..+...+++.+.... ++. +... +....++.+..... -...+...+++....=.-..|+
T Consensus 186 ~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks 265 (483)
T PRK09442 186 ALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRCMSYKD 265 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHHHHcCC
Confidence 76655544433332221111 111 0000 00011111111111 1122233344433222224566
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhHHHh
Q 013930 256 KHQFSYVLLVCFFLCTFIYASMAIFGYM 283 (433)
Q Consensus 256 p~~~~~~~~~~~~i~~i~y~~~~~~gy~ 283 (433)
+|+.+|....+......++....+.|..
T Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~G~~ 293 (483)
T PRK09442 266 SKALHRGIIIGTIVVGFLMFGMHLAGAL 293 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888877777777766666543
No 68
>PRK11017 codB cytosine permease; Provisional
Probab=98.20 E-value=0.0034 Score=61.57 Aligned_cols=282 Identities=14% Similarity=0.073 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcc
Q 013930 76 SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAI 155 (433)
Q Consensus 76 g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~ 155 (433)
.++..++...+...-.........+ ..-++.-+.|..||.+|..+..+...+...+.........+..+++..+. +.
T Consensus 44 ai~aiilG~~i~~~~~~l~~~~G~k--~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~-~~ 120 (404)
T PRK11017 44 FLLAVLIGNLLLGIYTAALGYIGAK--TGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL-DI 120 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--cCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-CH
Confidence 4444444333333333333333333 34789999999999999999988887777777666666666666654431 11
Q ss_pred cccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHHhhhhccccc--ccccccCcccccCCchhHhH
Q 013930 156 ELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVITLGSIVWTGAFD--GVGFHQKGTLVNWKGIPSSI 233 (433)
Q Consensus 156 ~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~ 233 (433)
. ...+++.++..+.... ..+.+.+++..+........+...+....+ +.+.....++.+...+..++
T Consensus 121 ---------~-~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~ 189 (404)
T PRK11017 121 ---------N-LLIVLSGLLMTVTAYF-GISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAAL 189 (404)
T ss_pred ---------H-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHH
Confidence 1 2334444444444422 334444444444333333222222211111 11100001111223455555
Q ss_pred hHhhhcc-ccccchhhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHhhccccchhHhhhcCCCCchhHHHHHHHHH
Q 013930 234 SLYAFCY-CAHPVFPTLYTSMKKKHQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQITLNLPTSKLSSRLAIYTTL 312 (433)
Q Consensus 234 ~~~~faf-~~~~~i~~i~~~m~~p~~~~~~~~~~~~i~~i~y~~~~~~gy~~fg~~~~~~~l~~~~~~~~~~~i~~~~~~ 312 (433)
...+=.+ ....+.+.+.+..|++|+.......+..+...+...+|...-...|+....+.... .... ........
T Consensus 190 ~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~~d~~~~~~~---~~~~-~~~l~~~~ 265 (404)
T PRK11017 190 TLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGNSLMFIFGAAGAAVYGQADISDVMIA---QGLL-IPAIVMLG 265 (404)
T ss_pred HHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHH---hchH-HHHHHHHH
Confidence 5443333 34567788888888887655666666667777777777766666665322222211 1111 12222233
Q ss_pred HHHhhhhhhhhhhHHHHHHHHcccCCCCCCceehhhHHHHHHHHHHHhh-ccchHHHHHHHhhhhhhhhh
Q 013930 313 VNPIAKYALMVTPIVNSIKMRASTQYSKRPYSLLISTPLVISTVIVALV-VPFFGYLMTLVGAFLSVTAS 381 (433)
Q Consensus 313 ~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~-~~~~~~v~~l~G~~~~~~~~ 381 (433)
+...++-....+...-.+.+... .+ +++ ...+..++...++.. ..++..++++.|...++...
T Consensus 266 l~~~t~n~~~~ys~~l~~~~l~~---~~-~~~--~~ii~~vi~~~i~~~~~~~~~~FL~~lg~~l~P~~g 329 (404)
T PRK11017 266 LNIWTTNDNALYASGLGFCNITR---LS-SRT--LTVVNGIIGTVLALWLYNNFVGWLTLLGSAIPPVGG 329 (404)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhc---Cc-chH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence 33333333334433334444431 11 111 122222333333332 35677788877766655443
No 69
>PRK09395 actP acetate permease; Provisional
Probab=98.10 E-value=0.015 Score=59.60 Aligned_cols=150 Identities=12% Similarity=0.091 Sum_probs=93.7
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhh-chhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCc
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGI-LSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQ 117 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~Gi-L~lP~a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 117 (433)
...|+.+++...+.+..+.+|++. ++.|-...+.|+.+....+...+........+.+-.++. +..|+.|+-++=||+
T Consensus 66 ~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~~~~g~~~~~~~~~~~~r~~-g~~T~~d~l~~Rygs 144 (551)
T PRK09395 66 TAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNL-GKYTFADVASYRLKQ 144 (551)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCccHHHHHHHHcCC
Confidence 457788888888888888887665 789987777887643222221111122233344434443 679999999988884
Q ss_pred -cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHH
Q 013930 118 -KGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGV 196 (433)
Q Consensus 118 -~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 196 (433)
+.+.+..+...+.............+..++.+++ .+ ....+++..+++...+..-.++...+...+-.
T Consensus 145 ~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g-i~----------~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~ 213 (551)
T PRK09395 145 GPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG-LN----------YHVAVVLVGVLMMVYVLFGGMLATTWVQIIKA 213 (551)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 5777777666655555556666666776666653 11 22334445555555666778888777777654
Q ss_pred HHHH
Q 013930 197 LASV 200 (433)
Q Consensus 197 ~~~~ 200 (433)
+..+
T Consensus 214 iim~ 217 (551)
T PRK09395 214 VLLL 217 (551)
T ss_pred HHHH
Confidence 4443
No 70
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.02 E-value=0.024 Score=58.03 Aligned_cols=149 Identities=12% Similarity=0.106 Sum_probs=93.6
Q ss_pred CCCCCchhHHHHHHHHhhhhh-hhchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcC-c
Q 013930 40 RTTKTSVFKTCFNGVNALSGV-GILSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFG-Q 117 (433)
Q Consensus 40 ~~~~~s~~~~~~~li~~~iG~-GiL~lP~a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G-~ 117 (433)
..|+.+++...+.+..+.+++ ..++.|-...+.|+.+....+..........+.+.+-.++. +..|..|..++=|| |
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~~~g~~~~~~i~~~~~a~~lrr~-g~~T~~d~l~~Rf~s~ 143 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYSLGFLVGWPIILFLIAERLRNL-GRYTFADVASYRLKQR 143 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcCCc
Confidence 577888888888888876665 56899987777887644333221111112334455544544 67999999888787 4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHH
Q 013930 118 KGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVL 197 (433)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 197 (433)
..+.+..+...+.........+...+..++.+++. + ....+++..+++........++...+...+-.+
T Consensus 144 ~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi-~----------~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~ 212 (549)
T TIGR02711 144 PIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL-N----------YHVAVVLVGILMVMYVLFGGMLATTWVQIIKAV 212 (549)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C----------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 46777666666665666666777777777776542 1 123344455555556667778777777776654
Q ss_pred HHH
Q 013930 198 ASV 200 (433)
Q Consensus 198 ~~~ 200 (433)
..+
T Consensus 213 im~ 215 (549)
T TIGR02711 213 LLL 215 (549)
T ss_pred HHH
Confidence 443
No 71
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.96 E-value=0.012 Score=58.10 Aligned_cols=47 Identities=11% Similarity=0.050 Sum_probs=33.0
Q ss_pred CCCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 013930 104 IRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLF 150 (433)
Q Consensus 104 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 150 (433)
.++..|+.++-+||+..++..+...+...+.........+.-++.++
T Consensus 93 G~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 93 GRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred CCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999887777666666666666666665555555443
No 72
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.94 E-value=0.027 Score=57.09 Aligned_cols=152 Identities=11% Similarity=0.088 Sum_probs=89.9
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhh-chhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HchhhCCCCCCHHHHHHH
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGI-LSTPYALASGGWLSLILLFFIAAVTFYSGLLIK----RCMDVDSNIRSYPDIGDR 113 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~Gi-L~lP~a~~~~G~~g~i~l~~~~~~~~~s~~~l~----~~~~~~~~~~~y~~l~~~ 113 (433)
-..|+.+++...+.+..+.+++.. ++.|....+.|+.+....+...+........+. .-.+++.+..|.+|.-++
T Consensus 37 lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~ 116 (502)
T PRK15419 37 LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTG 116 (502)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHH
Confidence 457889999999998888888777 678987778887532111111111111111211 111224477899999999
Q ss_pred hcCccchh---HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHH
Q 013930 114 AFGQKGRL---IVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSY 190 (433)
Q Consensus 114 ~~G~~~~~---~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 190 (433)
=||++.+. +..+...+.....+..-+...+..++.+++. + ....+++..+++......-.++...+
T Consensus 117 Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi-~----------~~~~iii~~~iv~iYt~~GGl~aV~~ 185 (502)
T PRK15419 117 RFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGM-S----------YETALWAGAAATILYTFIGGFLAVSW 185 (502)
T ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C----------HHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99865433 3444444444444555555566666665531 1 22344455566666666778888888
Q ss_pred HHHHHHHHHHH
Q 013930 191 VSASGVLASVI 201 (433)
Q Consensus 191 ~s~~~~~~~~~ 201 (433)
...+-.+..+.
T Consensus 186 TD~iQ~~imi~ 196 (502)
T PRK15419 186 TDTVQASLMIF 196 (502)
T ss_pred HHHHHHHHHHH
Confidence 77766554443
No 73
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.88 E-value=0.03 Score=54.47 Aligned_cols=360 Identities=11% Similarity=0.016 Sum_probs=176.7
Q ss_pred CCCchhHHHHHHHHhhhhhhhchhHHHHH-hhhHH-HHHHHH--HHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCc
Q 013930 42 TKTSVFKTCFNGVNALSGVGILSTPYALA-SGGWL-SLILLF--FIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQ 117 (433)
Q Consensus 42 ~~~s~~~~~~~li~~~iG~GiL~lP~a~~-~~G~~-g~i~l~--~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 117 (433)
++.......+....+-+|.|-++--.... +-|+- .++.++ +.......-...+.-. ..++..|..++-++|
T Consensus 15 ~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgiv-----TG~~laq~ir~~y~~ 89 (416)
T COG1914 15 KLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGIV-----TGKGLAEAIRERYLP 89 (416)
T ss_pred HHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCcHHHHHHHHccc
Confidence 34556666677777777777766654443 46664 333332 2222221111112211 246788888888999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHH
Q 013930 118 KGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVL 197 (433)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 197 (433)
+..++..+...+....++++..+..+--++-++.... .+-.++..+..+.+...++.+.+..+...-..
T Consensus 90 ~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~-----------~~g~iItav~~~iil~~~~~r~~E~~v~~l~~ 158 (416)
T COG1914 90 GLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPL-----------IIGAVITAVDVLIILLLKGYRLLERVVLILGL 158 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH-----------HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999988888888888888888877776663321 12233333333333334456666655544333
Q ss_pred HHHHHHHhhhhcccccccccc----c-CcccccC-CchhHhHhHhhh------ccccccchhh-HHhhccccccch---h
Q 013930 198 ASVITLGSIVWTGAFDGVGFH----Q-KGTLVNW-KGIPSSISLYAF------CYCAHPVFPT-LYTSMKKKHQFS---Y 261 (433)
Q Consensus 198 ~~~~~~~~~i~~~~~~~~~~~----~-~~~~~~~-~~~~~~~~~~~f------af~~~~~i~~-i~~~m~~p~~~~---~ 261 (433)
...+.++... ....+++. . ..+...+ .......+++-- .|.+.+.+-+ ..++-+++++.+ .
T Consensus 159 ~~~i~~~~~~---~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~~~~~~~~~~~~~~~ 235 (416)
T COG1914 159 VLVILFVYVA---FVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGIKGEENLRALRYSRI 235 (416)
T ss_pred HHHHHHHHHH---hhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccccchhHHHHHHHHHH
Confidence 3333222222 22222211 0 0111111 112222222111 1111221111 000000111222 2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhccccch-h---HhhhcC----C-CCchhHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 013930 262 VLLVCFFLCTFIYASMAIFGYMMFGSEVQ-S---QITLNL----P-TSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKM 332 (433)
Q Consensus 262 ~~~~~~~i~~i~y~~~~~~gy~~fg~~~~-~---~~l~~~----~-~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~ 332 (433)
-...+.....++...+-.+....|..+.+ + +....+ | -.+....+-....+.....+-....+.-...++.
T Consensus 236 d~~i~~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~~~~~a~~~~~~g 315 (416)
T COG1914 236 DTIIGMIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTVVATYAGQIVMEG 315 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHh
Confidence 33344444444554444444444432221 1 111111 1 0122221222222223333333334444455666
Q ss_pred HcccCCCCCCceehhhHHHHHHHHHHHhhccchHHHHHHHhhhhhhhhhhhhhhHHHHHHhcc---c-ccchhHHHHHHH
Q 013930 333 RASTQYSKRPYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGA---Y-RRYGIEMIAILG 408 (433)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~---~-~~~~~~~~~~~~ 408 (433)
...++.+++.+|...|....+++..+.....+...++.+++.+.+..+-+..+++..+..+|+ + +..+|.+...|.
T Consensus 316 ~~~~~~~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~ 395 (416)
T COG1914 316 FLNWRIPLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWI 395 (416)
T ss_pred hhcccCchHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHH
Confidence 665555666778888877777766666666689999999998888777777777777766664 2 334455555555
Q ss_pred HHHHHHHHHhHH
Q 013930 409 IVSIGFIVAAIG 420 (433)
Q Consensus 409 ~~~~g~~~~~~g 420 (433)
+..+=..+.+.-
T Consensus 396 v~~~i~~L~i~l 407 (416)
T COG1914 396 VVILIVALNIIL 407 (416)
T ss_pred HHHHHHHHHHHH
Confidence 544444444333
No 74
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.87 E-value=0.045 Score=56.11 Aligned_cols=150 Identities=11% Similarity=0.062 Sum_probs=96.1
Q ss_pred CCCCCCchhHHHHHHHHhhhhhh-hchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCc
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVG-ILSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQ 117 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~G-iL~lP~a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 117 (433)
...|+.+++...+.+..+.++++ .++.|....+.|+.+.................+.+-.++. +..|..|+-++=||+
T Consensus 29 laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~-~~~T~~e~l~~Rf~s 107 (552)
T TIGR03648 29 VAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKF-GKYTVPDFIGDRYYS 107 (552)
T ss_pred eeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCccHHHHHHHHhCC
Confidence 46789999999999998888665 5788877777776533222211111122335555555554 778999999888985
Q ss_pred c-chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHH
Q 013930 118 K-GRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGV 196 (433)
Q Consensus 118 ~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 196 (433)
+ .+.+..+...+.........+...+..++.+.+. + ....+++..+++...+..-.++...+...+-.
T Consensus 108 ~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi-~----------~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~ 176 (552)
T TIGR03648 108 NTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV-D----------FETGVFIGMAIVFFYAVLGGMKGVTWTQVAQY 176 (552)
T ss_pred CceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5 5777666666666666666667777777766542 1 12334444555555666778888877776664
Q ss_pred HHHH
Q 013930 197 LASV 200 (433)
Q Consensus 197 ~~~~ 200 (433)
+..+
T Consensus 177 iim~ 180 (552)
T TIGR03648 177 IVLI 180 (552)
T ss_pred HHHH
Confidence 4443
No 75
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.86 E-value=0.015 Score=56.96 Aligned_cols=343 Identities=13% Similarity=0.034 Sum_probs=157.7
Q ss_pred CCCCCCCchhHHHHHHHHhhhhhhhchhHHHHHhhh--HH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHh
Q 013930 38 DSRTTKTSVFKTCFNGVNALSGVGILSTPYALASGG--WL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRA 114 (433)
Q Consensus 38 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G--~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~ 114 (433)
++++|+=++++-+..=.+...-.+-..+-...-+.| +. .++.+++.-.+....+.+-.+...+ ..-+|+.+.+..
T Consensus 35 ~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~--~gIpFpv~~RaS 112 (497)
T COG1953 35 PAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSK--YGIPFPVLSRAS 112 (497)
T ss_pred ccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccc--cCCCchHHHHHH
Confidence 356667777766665555544444333333333333 33 5555555445555555544444443 347999999999
Q ss_pred cCccchhH---HHHHHHHHHHHHHHHHHHH-hhhhhhhhccCCcccccccccCC--ch--hHHHHHHHHHhhcccccCCC
Q 013930 115 FGQKGRLI---VSVFMNIELYLVATGFLIL-EGDNLENLFPNTAIELGGFTLGG--KQ--CFVVIIALIILPTVWLDNLS 186 (433)
Q Consensus 115 ~G~~~~~~---~~~~~~~~~~g~~~~y~i~-~~~~l~~~~~~~~~~~~~~~~~~--~~--~~~~i~~~~~~pl~~~~~l~ 186 (433)
||-++..+ ......+..+|..+-.--. +--.+....+............+ .. ....++-++.++. ..+..+
T Consensus 113 FGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~-~~~g~~ 191 (497)
T COG1953 113 FGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLV-LFKGME 191 (497)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHH-HhcCHH
Confidence 99876544 4445555555553321111 11122233333111111000001 11 1112222333333 356777
Q ss_pred chHHHHHHHHHHHHHHHHhhhhcccccccc----cccCcccccCCc---hhHhHhHhhhcc--ccccchhhHHhhccccc
Q 013930 187 LLSYVSASGVLASVITLGSIVWTGAFDGVG----FHQKGTLVNWKG---IPSSISLYAFCY--CAHPVFPTLYTSMKKKH 257 (433)
Q Consensus 187 ~l~~~s~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~faf--~~~~~i~~i~~~m~~p~ 257 (433)
.++++....-..+.+....+.+........ .+.+....+..+ .+...-..+.++ ...-|.|...++-|+||
T Consensus 192 ~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s~~ 271 (497)
T COG1953 192 SIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKSQK 271 (497)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCChh
Confidence 777776666555554444443332222111 111211111111 122222222222 34567788888888876
Q ss_pred cchhHHHHHHHHHHHHHH----HHHhHHHhhcccc--chhHhhhcCCCCchhHHHHHH-HHHHHHhhhhhhhhhhHHHHH
Q 013930 258 QFSYVLLVCFFLCTFIYA----SMAIFGYMMFGSE--VQSQITLNLPTSKLSSRLAIY-TTLVNPIAKYALMVTPIVNSI 330 (433)
Q Consensus 258 ~~~~~~~~~~~i~~i~y~----~~~~~gy~~fg~~--~~~~~l~~~~~~~~~~~i~~~-~~~~~~~~s~p~~~~~~~~~~ 330 (433)
+-..--.++..+.+.+.- +.+..++..||+. .+.++..++++......++-+ +.+.++-+...-...+.-..+
T Consensus 272 ~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vsp~~D~ 351 (497)
T COG1953 272 AQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATISTNIAANIVSPGYDL 351 (497)
T ss_pred hhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCChHHHH
Confidence 544333344444444444 4445567889987 566778888766444312222 222233333333444444555
Q ss_pred HHHcccCCCCCCcee-hhhHHHHHHHHHHHhhccchHHHHHHHhhhhhhhhhhh
Q 013930 331 KMRASTQYSKRPYSL-LISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVI 383 (433)
Q Consensus 331 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~v~~l~G~~~~~~~~~i 383 (433)
...+++.-+-|+..+ .....+.+.++-+=..-..+...++..|++-+++..-+
T Consensus 352 s~l~Pk~in~krg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVm 405 (497)
T COG1953 352 SALFPKYINIKRGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVM 405 (497)
T ss_pred HHhcccccchhhhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHH
Confidence 566654433111111 11122222222222222357777776667666644433
No 76
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.85 E-value=0.017 Score=55.79 Aligned_cols=236 Identities=14% Similarity=0.132 Sum_probs=127.7
Q ss_pred CCCCCchhHHHHHHHHhhhhhhh-chhHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHH
Q 013930 40 RTTKTSVFKTCFNGVNALSGVGI-LSTPYALASGGWL-----SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDR 113 (433)
Q Consensus 40 ~~~~~s~~~~~~~li~~~iG~Gi-L~lP~a~~~~G~~-----g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~ 113 (433)
++.-.|...-++..+++.+|-|- --.||-.++.|-. -++.+++.++--...=+.+.|..++ ...++|..+..
T Consensus 5 re~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~-~~~~a~~~l~~- 82 (439)
T COG0733 5 REQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRK-NAVGAFRKLAP- 82 (439)
T ss_pred ccchhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCC-ChhHHHHHhcc-
Confidence 44466777888889999999985 6889988876633 2233333333222222333443332 24556666654
Q ss_pred hcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccc----c------ccccCCch---hHHHHHHHHHhhcc
Q 013930 114 AFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIEL----G------GFTLGGKQ---CFVVIIALIILPTV 180 (433)
Q Consensus 114 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~----~------~~~~~~~~---~~~~i~~~~~~pl~ 180 (433)
+|++ ....+......+..+.-|.++.|=.+..+........ + .....+.. .+.+++ .++..+.
T Consensus 83 --~~~~-~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~lt~~i 158 (439)
T COG0733 83 --KKKW-EWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLF-LVLTALI 158 (439)
T ss_pred --Cccc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHH-HHHHHHH
Confidence 3333 3333444444555555566665554444432221110 0 00001011 111111 1222222
Q ss_pred cccCCCc-hHHHHHHHHHHHHHHHHhhhhccccccccc-------ccCcc-cccCCchhHhHhHhhhcc-ccccchhhHH
Q 013930 181 WLDNLSL-LSYVSASGVLASVITLGSIVWTGAFDGVGF-------HQKGT-LVNWKGIPSSISLYAFCY-CAHPVFPTLY 250 (433)
Q Consensus 181 ~~~~l~~-l~~~s~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~faf-~~~~~i~~i~ 250 (433)
..|.+++ +.+.+.+.+-..++.++.++.+....+... .++.+ ..|++.+..+++...|+. .|........
T Consensus 159 v~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYs 238 (439)
T COG0733 159 VSRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYS 238 (439)
T ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2566544 888888887777776666666554322211 11112 234677889999999999 5677778888
Q ss_pred hhccccccchhHHHHHHHHHHHHHHHHHhHH
Q 013930 251 TSMKKKHQFSYVLLVCFFLCTFIYASMAIFG 281 (433)
Q Consensus 251 ~~m~~p~~~~~~~~~~~~i~~i~y~~~~~~g 281 (433)
+.++|+++..+........-+.+=++.|+.-
T Consensus 239 SYL~k~~~l~~sa~~v~~~n~~~s~lAGl~I 269 (439)
T COG0733 239 SYLSKKSDLVSSALSIVLLNTLISLLAGLVI 269 (439)
T ss_pred hhcCcccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 8999888887765555555555555444443
No 77
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.75 E-value=0.00053 Score=68.24 Aligned_cols=241 Identities=12% Similarity=0.049 Sum_probs=123.5
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhchhHHHHHh--hhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcC
Q 013930 40 RTTKTSVFKTCFNGVNALSGVGILSTPYALAS--GGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFG 116 (433)
Q Consensus 40 ~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~--~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G 116 (433)
++|+.+.++.+..-.+..+....+.+-..... .++. +++.+++..++...-.........| ...++..+.|..||
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r--~Gl~~~v~sR~~FG 82 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPR--TGLPTMVLSRASFG 82 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHC--C---HHHHTTTTS-
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccc--cCCCchhcchhccC
Confidence 55566677777777776666665555544432 3444 5555555555444444444444333 34688888999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccc---cc----ccccCCchhHHHHHHHHHhhcccccCCCchH
Q 013930 117 QKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIE---LG----GFTLGGKQCFVVIIALIILPTVWLDNLSLLS 189 (433)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~---~~----~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 189 (433)
++|.++..+...+...|.........++.+..+.+..... .+ .... ......++..++..+.. ....+.++
T Consensus 83 ~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~-~~g~~~l~ 160 (440)
T PF02133_consen 83 YRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIAL-PLWVCFFIFWLIQTLFA-IYGMKALR 160 (440)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH------------HHHHHHHHHHHHHH-CTHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchh-hHHHHHHHHHHHHHHHH-hcCHHHHH
Confidence 9999999999999999988888888999998877654220 00 0000 01111122222332222 33445555
Q ss_pred HHHHHHHHHHHHHHHhhh-hcccccccc--cccCcccccCCchhHhHhHhhhccc-cccchhhHHhhccccccchhHHHH
Q 013930 190 YVSASGVLASVITLGSIV-WTGAFDGVG--FHQKGTLVNWKGIPSSISLYAFCYC-AHPVFPTLYTSMKKKHQFSYVLLV 265 (433)
Q Consensus 190 ~~s~~~~~~~~~~~~~~i-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~p~~~~~~~~~ 265 (433)
.+............+... +.....+.+ .+.+........+..++...+-.+. ...+.+.+.+.+|++++-.+....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~ 240 (440)
T PF02133_consen 161 RLAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSDTSAWWGFWL 240 (440)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--HHHHHHHHHH
T ss_pred hHHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCCCCcEEEEee
Confidence 555544433333322222 221111111 1111111111134455544443433 334557889999988777777778
Q ss_pred HHHHHHHHHHHHHhHHHhh
Q 013930 266 CFFLCTFIYASMAIFGYMM 284 (433)
Q Consensus 266 ~~~i~~i~y~~~~~~gy~~ 284 (433)
+..........++..+...
T Consensus 241 ~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 241 GFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 8877777777777766554
No 78
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.74 E-value=0.064 Score=54.13 Aligned_cols=152 Identities=17% Similarity=0.175 Sum_probs=88.0
Q ss_pred CCCCCCchhHHHHHHHHhhhhhh-hchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhh----CCCCCCHHHHHHH
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVG-ILSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDV----DSNIRSYPDIGDR 113 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~G-iL~lP~a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~----~~~~~~y~~l~~~ 113 (433)
-..|+.+++-..+.+..+.+++. +++.|....+.|+.+........+........+.+-.++ +.+..|..|+-++
T Consensus 33 lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 33 LGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred eeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 35778899988888888877765 477887777778763222221111112222333332221 3467899999999
Q ss_pred hcCccchhH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHH
Q 013930 114 AFGQKGRLI---VSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSY 190 (433)
Q Consensus 114 ~~G~~~~~~---~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 190 (433)
=||++.+.+ ..+...+.........+...+..++.+++. + ....+++..+++........++...+
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi-~----------~~~~iii~~~i~~~Yt~~GGl~av~~ 181 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL-D----------YKTGLLIGALIIVIYTFFGGFLAVSW 181 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-c----------HHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999654433 333343344444455555666666666531 1 12334444555555666777888877
Q ss_pred HHHHHHHHHHH
Q 013930 191 VSASGVLASVI 201 (433)
Q Consensus 191 ~s~~~~~~~~~ 201 (433)
...+-.+..+.
T Consensus 182 TD~iQ~~i~~~ 192 (487)
T TIGR02121 182 TDFVQGLLMFF 192 (487)
T ss_pred HHHHHHHHHHH
Confidence 77766554443
No 79
>PRK10484 putative transporter; Provisional
Probab=97.71 E-value=0.075 Score=54.12 Aligned_cols=158 Identities=14% Similarity=0.051 Sum_probs=84.4
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhh-chhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCc
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGI-LSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQ 117 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~Gi-L~lP~a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 117 (433)
-..|+.+++-..+.+..+.++++. ++.|....+.|+.................+.+.+-.++ .+..|.+|+-++-||+
T Consensus 35 lagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r-~~~~T~~e~l~~Ryg~ 113 (523)
T PRK10484 35 LAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYLK-SGITTIPDFLEERYDK 113 (523)
T ss_pred ecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHhcCc
Confidence 467899999888888888777765 68887776777652211111111111223333333333 3788999999999999
Q ss_pred cchhHHHHHHHHHHHHH-HHHHHHHhhhhhhhhccCCcccccccccCCch-hH--HHHHHHHHhhcccccCCCchHHHHH
Q 013930 118 KGRLIVSVFMNIELYLV-ATGFLILEGDNLENLFPNTAIELGGFTLGGKQ-CF--VVIIALIILPTVWLDNLSLLSYVSA 193 (433)
Q Consensus 118 ~~~~~~~~~~~~~~~g~-~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~-~~--~~i~~~~~~pl~~~~~l~~l~~~s~ 193 (433)
+.+.+......+..... +...+...+..+.+++..... .+. +... .+ .++..++....+..-.++...+...
T Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~--~gi--~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD~ 189 (523)
T PRK10484 114 TTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSEL--LGI--SYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVSDT 189 (523)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh--cCC--cHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 88777666544433332 222222223333333211000 000 0010 11 1122334455566778888888777
Q ss_pred HHHHHHHH
Q 013930 194 SGVLASVI 201 (433)
Q Consensus 194 ~~~~~~~~ 201 (433)
+-.+..+.
T Consensus 190 iQ~vim~i 197 (523)
T PRK10484 190 INGIGLLI 197 (523)
T ss_pred HHHHHHHH
Confidence 76554443
No 80
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.54 E-value=0.0083 Score=56.46 Aligned_cols=192 Identities=16% Similarity=0.212 Sum_probs=124.2
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCcc
Q 013930 40 RTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQK 118 (433)
Q Consensus 40 ~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~ 118 (433)
+.-..+.+..+.+=..++-|+|...=|..-.+-||+ +.+.+++-+++.--...+..-..+-+++-+|..|++++..||+
T Consensus 48 DYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~ 127 (376)
T PF02554_consen 48 DYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKR 127 (376)
T ss_pred CCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHH
Confidence 334677788899999999999999999888999999 8888887776666666555555554457899999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhccc-ccCCCchHHHHHHHHH
Q 013930 119 GRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVW-LDNLSLLSYVSASGVL 197 (433)
Q Consensus 119 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~-~~~l~~l~~~s~~~~~ 197 (433)
++.+..+..++.+......+....++.+.+.-... ...+..+...+.+-... .|+.+ +...+.+++.
T Consensus 128 ~~~lf~~f~~~~lilV~avF~~v~a~~~~~~p~~~-----------~~~~~~I~~Ai~~G~~~y~~~~~-~~~~t~i~vv 195 (376)
T PF02554_consen 128 AKKLFLIFIFFLLILVIAVFADVVANTFVNSPWAA-----------TSSLLFIPIAILFGLLVYKRGGN-LGPATIIGVV 195 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHH-----------HHHHHHHHHHHHHhHhheecCCc-hHhhHHHHHH
Confidence 99999999999998888888887777775521110 11223333333333333 33444 5555555544
Q ss_pred HHHHHHHhhhhcccccccccccCcccccCCchhHhHhHhhhccccccchhhHHhhcccccc
Q 013930 198 ASVITLGSIVWTGAFDGVGFHQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQ 258 (433)
Q Consensus 198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~ 258 (433)
.....+ +.+... +.. .. -.+..-.+++.|.....+.|+-.-+. ||+
T Consensus 196 ll~~~v----~~G~~~--p~~----~~----~~~~W~~ii~~Y~~iAs~lPVw~Llq-prd 241 (376)
T PF02554_consen 196 LLLLAV----WLGMYF--PIS----LL----SVTTWIIIIFIYYFIASVLPVWKLLQ-PRD 241 (376)
T ss_pred HHHHHH----Hhhhhc--ccc----cC----cHHHHHHHHHHHHHHHHHhhHHHHhC-chH
Confidence 443322 222111 100 01 12233446777777777778766655 444
No 81
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.32 E-value=0.045 Score=55.13 Aligned_cols=239 Identities=14% Similarity=0.104 Sum_probs=117.2
Q ss_pred CCchhHHHHHHHH-hhhhhh-hchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhh--CCCCCCHHHHHHHhcCc
Q 013930 43 KTSVFKTCFNGVN-ALSGVG-ILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDV--DSNIRSYPDIGDRAFGQ 117 (433)
Q Consensus 43 ~~s~~~~~~~li~-~~iG~G-iL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~--~~~~~~y~~l~~~~~G~ 117 (433)
|++.+..++.=+. ++..+= .|=.++...|+|.. .+..++++-.+...+..-+...+.. -.+..-|.-+.+ .+|+
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISR-sLGp 144 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISR-SLGP 144 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEc-ccCc
Confidence 7777766554332 222222 24567778889988 6666666555555554434332221 123455655543 4555
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccc-ccccccCC----chhHHHHHHHHHhhcccccCCCchHHHH
Q 013930 118 KGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIE-LGGFTLGG----KQCFVVIIALIILPTVWLDNLSLLSYVS 192 (433)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~-~~~~~~~~----~~~~~~i~~~~~~pl~~~~~l~~l~~~s 192 (433)
-.+--+....++.+...|..++.-+.|-+-+-+...... ..+-.++. +..+..++..+...+|+.. -.-.++.+
T Consensus 145 EfGGSIGllFf~anV~~~am~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lG-salfAkas 223 (945)
T KOG1288|consen 145 EFGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLG-SALFAKAS 223 (945)
T ss_pred ccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhh-HHHHHhhh
Confidence 444444555555666667777766666555544321110 00001111 2222222333333344332 12233333
Q ss_pred HHHHHHHHHHHHhhhhccccccc---cc---ccCc----c------ccc--------------------CCchhHhHhHh
Q 013930 193 ASGVLASVITLGSIVWTGAFDGV---GF---HQKG----T------LVN--------------------WKGIPSSISLY 236 (433)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~---~~---~~~~----~------~~~--------------------~~~~~~~~~~~ 236 (433)
.+.+..+....+.+.+..+..++ .. +.+. + -.+ ..++...++++
T Consensus 224 ~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~ 303 (945)
T KOG1288|consen 224 NILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVF 303 (945)
T ss_pred hhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheee
Confidence 33333332222222222211111 00 0000 0 001 11334455555
Q ss_pred hhccccccchhhHHhhcccc-ccchhHHHHHHHHHHHHHHHHHhHHHh
Q 013930 237 AFCYCAHPVFPTLYTSMKKK-HQFSYVLLVCFFLCTFIYASMAIFGYM 283 (433)
Q Consensus 237 ~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~i~~i~y~~~~~~gy~ 283 (433)
.=+-.|.-.=-.+..|+|+| |.++|-...+....+++|.+..+.--.
T Consensus 304 F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~ 351 (945)
T KOG1288|consen 304 FPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGC 351 (945)
T ss_pred eccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhcc
Confidence 55555555556788899999 678999999999999999988765433
No 82
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.15 Score=52.02 Aligned_cols=107 Identities=12% Similarity=0.161 Sum_probs=75.4
Q ss_pred CCCCchhHHHHHHHHhhhhhhh-chhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhh--CCCCCCHHHHHHHhcC
Q 013930 41 TTKTSVFKTCFNGVNALSGVGI-LSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDV--DSNIRSYPDIGDRAFG 116 (433)
Q Consensus 41 ~~~~s~~~~~~~li~~~iG~Gi-L~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~--~~~~~~y~~l~~~~~G 116 (433)
.+-.+......-.+..+.|.-. +=|-|....+|.. +..++++.+..+..++.-+...+.. -+...+|.-+. +.+|
T Consensus 112 ~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmIS-RsLG 190 (1075)
T KOG2082|consen 112 ARMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMIS-RSLG 190 (1075)
T ss_pred cccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEe-cccC
Confidence 3345555666677888888765 5677888889998 8888888887777776666554433 24557777666 4567
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 013930 117 QKGRLIVSVFMNIELYLVATGFLILEGDNLEN 148 (433)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 148 (433)
+-.+..+.++.++..-.+-..|+.-.-|.+-.
T Consensus 191 PEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~ 222 (1075)
T KOG2082|consen 191 PEFGGAVGLCFYLGTTVAAAMYILGAVEIFLT 222 (1075)
T ss_pred ccccceeeehhhhhhHHHHHHHHHhHHHHHHH
Confidence 76667777777777777777888877776665
No 83
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=97.21 E-value=0.15 Score=51.88 Aligned_cols=50 Identities=14% Similarity=0.051 Sum_probs=33.6
Q ss_pred chhHhHhHhhhcc-ccccchhhHHhhccccccchhHHHHHHHHHHHHHHHH
Q 013930 228 GIPSSISLYAFCY-CAHPVFPTLYTSMKKKHQFSYVLLVCFFLCTFIYASM 277 (433)
Q Consensus 228 ~~~~~~~~~~faf-~~~~~i~~i~~~m~~p~~~~~~~~~~~~i~~i~y~~~ 277 (433)
-+..+++..+|+. .|........+.+|++++..|........-....++.
T Consensus 250 vW~~A~~Q~ffsl~ig~G~~it~~Sy~~~~~n~~~~a~~v~~~~~~~slla 300 (523)
T PF00209_consen 250 VWIAALGQVFFSLSIGFGIMITYGSYNKFKNNIFRDALIVAFINTLVSLLA 300 (523)
T ss_dssp HHHHHHHHHHHHTTTTSSHHHHHHTTS-TTS-SHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhccCCCcceEEEEcCcCCCCccccccceEEEcCchhhhHhH
Confidence 3678999999999 4677778888888887888775555555554444433
No 84
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=97.18 E-value=0.26 Score=47.93 Aligned_cols=54 Identities=17% Similarity=0.229 Sum_probs=38.3
Q ss_pred CCCCCCCCchhHHHHHHHHhhhhhhh-chhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 013930 37 DDSRTTKTSVFKTCFNGVNALSGVGI-LSTPYALASGGWLSLILLFFIAAVTFYS 90 (433)
Q Consensus 37 ~~~~~~~~s~~~~~~~li~~~iG~Gi-L~lP~a~~~~G~~g~i~l~~~~~~~~~s 90 (433)
+++++++.|.+|+++..+.+.+|+|= .+...|....|.-.+..+-+.+++..-+
T Consensus 12 ~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmat 66 (416)
T PF01235_consen 12 KKEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMAT 66 (416)
T ss_pred CCCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Confidence 34566689999999999999999996 5777788777754444444444444333
No 85
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.14 E-value=0.25 Score=47.65 Aligned_cols=86 Identities=14% Similarity=0.138 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhccc-
Q 013930 103 NIRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVW- 181 (433)
Q Consensus 103 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~- 181 (433)
..++..|..++-+||+..+...+...+.......+.....+.-++-++ ..+ ...+.++..+....+..
T Consensus 40 Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~-g~~----------~~~~~~~~~~~~~~ll~~ 108 (358)
T PF01566_consen 40 TGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF-GIP----------LWIWVLLVAVIAILLLWL 108 (358)
T ss_pred cCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC----------cHHHHHHHHHHHHHHHHH
Confidence 346888888888999988888888888787777777777777776655 222 12444444433333333
Q ss_pred -ccCCCchHHHHHHHHHHH
Q 013930 182 -LDNLSLLSYVSASGVLAS 199 (433)
Q Consensus 182 -~~~l~~l~~~s~~~~~~~ 199 (433)
.++++.+.++........
T Consensus 109 ~~~~y~~~E~~~~~lv~~m 127 (358)
T PF01566_consen 109 SSGGYRRLERILKVLVAVM 127 (358)
T ss_pred HhccchHHHHHHHHHHHHH
Confidence 667888877766544444
No 86
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.01 E-value=0.36 Score=48.22 Aligned_cols=27 Identities=22% Similarity=0.033 Sum_probs=20.1
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhchh
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGILST 65 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~GiL~l 65 (433)
+.+++-|.++-...+.++-+|+|++.-
T Consensus 70 d~kPefS~~sW~aMlf~aGig~Givfw 96 (485)
T PF02028_consen 70 DAKPEFSTFSWFAMLFCAGIGAGIVFW 96 (485)
T ss_dssp SS--SS-HHHHHHHHHHHCSSHHHHHH
T ss_pred CCCCCCCchHHHHHHHHHHhcchhhcc
Confidence 456678888899999999999999743
No 87
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=96.92 E-value=0.23 Score=48.57 Aligned_cols=320 Identities=15% Similarity=0.163 Sum_probs=152.0
Q ss_pred CCchhHHHHHHHHhhhhhhhchhHHHHHh-hh--HH-HHHHHHHHHHHHHHHH-HHHHHchhhCCCCCCHHHHHHHhcCc
Q 013930 43 KTSVFKTCFNGVNALSGVGILSTPYALAS-GG--WL-SLILLFFIAAVTFYSG-LLIKRCMDVDSNIRSYPDIGDRAFGQ 117 (433)
Q Consensus 43 ~~s~~~~~~~li~~~iG~GiL~lP~a~~~-~G--~~-g~i~l~~~~~~~~~s~-~~l~~~~~~~~~~~~y~~l~~~~~G~ 117 (433)
|......-+.+...-.|+|=|-.|-...+ +| |. +.+..++.++.--.-. ..+.+ ...++.+++++.- |
T Consensus 2 ~k~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~------~~~~~~~l~~~v~-~ 74 (427)
T PF05525_consen 2 KKDILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAK------SGGGIEDLASRVG-P 74 (427)
T ss_pred cchhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhh------cCCCHHHHhcccC-c
Confidence 34456677888999999999999987764 66 55 7777766664433322 22222 1238999887754 4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHh----hhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHH
Q 013930 118 KGRLIVSVFMNIELYLVATGFLILE----GDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSA 193 (433)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 193 (433)
+...+.....++. .|-..+-=... .-.+..+++. + .........+++..+.+.++ .|.=|-+.++..
T Consensus 75 ~f~~if~~~i~l~-IGP~~aiPRtaa~sfe~~i~p~~~~-~------~~~~~~ifs~iFF~i~~~l~-~~p~kivd~iGk 145 (427)
T PF05525_consen 75 KFALIFTILIYLS-IGPLFAIPRTAAVSFEMGIAPFFPE-N------SNISLLIFSIIFFAITYLLS-LNPSKIVDRIGK 145 (427)
T ss_pred HHHHHHHHHHHHH-HHhcccCcchhhhhHHHhhhccCCc-c------cccchhhhhHHHHHHHHHHH-hchhhHHHHHHH
Confidence 4444443333221 12111100000 0112222222 0 01123355566666666666 444455555555
Q ss_pred HHHHHHHHHHHhhhhcccccccccc-cCcccccC----Cc------hhHhHhHhhhccccccchhhHHh-hcccccc---
Q 013930 194 SGVLASVITLGSIVWTGAFDGVGFH-QKGTLVNW----KG------IPSSISLYAFCYCAHPVFPTLYT-SMKKKHQ--- 258 (433)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~----~~------~~~~~~~~~faf~~~~~i~~i~~-~m~~p~~--- 258 (433)
.-+-..+..+.++++.++....+.. ++...... ++ -..++....|+-.... .+.+ ..+|+|+
T Consensus 146 ~LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~---~i~~~g~~~~k~~~~ 222 (427)
T PF05525_consen 146 FLTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIIN---AIRQKGYKDKKEIKK 222 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHH---HHHHhCCCCHHHHHH
Confidence 5555555555555555544322211 11111111 11 1234444444442111 1111 1222333
Q ss_pred -chhHHHHHHHHHHHHHHHHHhHHHhhcc---ccch-hHhhhcCCCC---chhHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 013930 259 -FSYVLLVCFFLCTFIYASMAIFGYMMFG---SEVQ-SQITLNLPTS---KLSSRLAIYTTLVNPIAKYALMVTPIVNSI 330 (433)
Q Consensus 259 -~~~~~~~~~~i~~i~y~~~~~~gy~~fg---~~~~-~~~l~~~~~~---~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~ 330 (433)
..++..++.....++|...+..|...-+ ++.+ +.++....+. +.-..+....+.+..+++--=....+.|.+
T Consensus 223 ~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf 302 (427)
T PF05525_consen 223 YTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYF 302 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356667777778888888888876544 2333 3344332111 111111112222222222222333444555
Q ss_pred HHHcccCCCCCCceehhhHHHHHHHHHHHhhccchHHHHHHHhhhhhhhhhhhhhhHHHHHH
Q 013930 331 KMRASTQYSKRPYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKI 392 (433)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~l~G~~~~~~~~~ilP~~~~l~~ 392 (433)
++.++ |........+..+.++++|.. .++.++++ +...+.++.|....+..
T Consensus 303 ~~~~~-----kisY~~~v~i~~i~S~~ian~--Gl~~Ii~~----s~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 303 SELFP-----KISYKVWVIIFTIFSFIIANL--GLDQIIKI----SVPILMFIYPVAIVLIL 353 (427)
T ss_pred HHHhc-----ccChHHHHHHHHHHHHHHHHh--CHHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 55552 222222333333455555542 46677765 45678889998887755
No 88
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=96.61 E-value=0.058 Score=53.24 Aligned_cols=105 Identities=17% Similarity=0.236 Sum_probs=82.7
Q ss_pred CCchhHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCccchh
Q 013930 43 KTSVFKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRL 121 (433)
Q Consensus 43 ~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~ 121 (433)
..+.+..+-+=..++-|+|.+.=|.--+|.||. +.+.+++-.++.---..+++-..+...+.+|..|++++..|++.+.
T Consensus 51 Ptnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~ 130 (575)
T COG1966 51 PTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKV 130 (575)
T ss_pred cCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHH
Confidence 567778888889999999999999999999998 8888887777666556555554444447799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 013930 122 IVSVFMNIELYLVATGFLILEGDNLE 147 (433)
Q Consensus 122 ~~~~~~~~~~~g~~~~y~i~~~~~l~ 147 (433)
+..+...+........+.....+.+.
T Consensus 131 ~~~~~~l~iliiv~Avfa~vv~~~l~ 156 (575)
T COG1966 131 FFLLLALILLILVGAVFAAVIAKLLA 156 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988877776666666555554443
No 89
>PRK15015 carbon starvation protein A; Provisional
Probab=96.55 E-value=0.033 Score=56.16 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=83.1
Q ss_pred CCchhHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCccchh
Q 013930 43 KTSVFKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRL 121 (433)
Q Consensus 43 ~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~ 121 (433)
..+.+-.+-+=..++-|+|.+.=|..-.+.||. +.+.+++-.++.---..+..-..+.+++.+|..|++++..||+++.
T Consensus 82 Pt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~ 161 (701)
T PRK15015 82 PTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGV 161 (701)
T ss_pred cCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHH
Confidence 455667788889999999999999988899999 8888887666655555444444443447799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 013930 122 IVSVFMNIELYLVATGFLILEGDNLE 147 (433)
Q Consensus 122 ~~~~~~~~~~~g~~~~y~i~~~~~l~ 147 (433)
+..+.+++.+......+...+.+.+.
T Consensus 162 lfli~i~~iliiviAvfalvvv~al~ 187 (701)
T PRK15015 162 IALVACFMIMVIILAVLAMIVVKALT 187 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998888887777777777666663
No 90
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=95.85 E-value=0.045 Score=54.40 Aligned_cols=228 Identities=13% Similarity=0.138 Sum_probs=129.7
Q ss_pred CCCCchhHHHHHH-HHhhhhhhh-chhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhC--CCCCCHHHHHHHhc
Q 013930 41 TTKTSVFKTCFNG-VNALSGVGI-LSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVD--SNIRSYPDIGDRAF 115 (433)
Q Consensus 41 ~~~~s~~~~~~~l-i~~~iG~Gi-L~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~--~~~~~y~~l~~~~~ 115 (433)
.-+-+|++.++.- .-.+.|.=. |=++|...|+|.. +++++.+...++..+..-.....++. +....|.-++ +.+
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis-~sl 105 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLIS-RSL 105 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEE-ecc
Confidence 3355666555542 234445433 6789999999998 99888887777766655433333321 1233444333 556
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHH
Q 013930 116 GQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASG 195 (433)
Q Consensus 116 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 195 (433)
|+..+--+.+.+.+.+.-.+..|.+-++|.+.+++...+.. ..++ +..+..++.+-++.. ..+.-.+...+.
T Consensus 106 g~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~~----~i~g---i~~vt~~ill~i~~a-g~~w~~k~q~~l 177 (643)
T KOG2083|consen 106 GPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETESKE----MIDG---IGSVTVLILLAINVA-GVEWEAKLQIVL 177 (643)
T ss_pred cccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccHH----Hhcc---hhHHHHHHHHHhhhc-cchhHHHHHHHH
Confidence 77777777888888888889999999999999998765421 2222 112222223223322 233333333222
Q ss_pred HHHHHHHHHhhhhccccccc-------ccc----cCcccccC---CchhHhHhHhhhccccccchhhHHhhcccc-ccch
Q 013930 196 VLASVITLGSIVWTGAFDGV-------GFH----QKGTLVNW---KGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFS 260 (433)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~-------~~~----~~~~~~~~---~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~ 260 (433)
+..+++.+.--++....... .++ .+....++ ..+++.++++.=+..|.-.=..+.+++|+| +..+
T Consensus 178 l~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP 257 (643)
T KOG2083|consen 178 LLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIP 257 (643)
T ss_pred HHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhhcc
Confidence 22222111111111111100 000 01111112 256666677766776666667888999999 6788
Q ss_pred hHHHHHHHHHHHHHHHH
Q 013930 261 YVLLVCFFLCTFIYASM 277 (433)
Q Consensus 261 ~~~~~~~~i~~i~y~~~ 277 (433)
+....+..+...+|..+
T Consensus 258 ~GaL~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 258 LGALLAIGVSTLLYLIF 274 (643)
T ss_pred cchhhhhhhhhhhhhhh
Confidence 99999999999999655
No 91
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=95.84 E-value=2.1 Score=42.00 Aligned_cols=213 Identities=14% Similarity=0.051 Sum_probs=122.6
Q ss_pred hhhchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHH-hcCccchhHHHHHHHHHHHHHHHHH
Q 013930 60 VGILSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDR-AFGQKGRLIVSVFMNIELYLVATGF 138 (433)
Q Consensus 60 ~GiL~lP~a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~-~~G~~~~~~~~~~~~~~~~g~~~~y 138 (433)
+..|+++....-.|+.|++.....-.--.....++.+-.++. +..|+.|...+ .--++.|.+..+.-.+..+...++.
T Consensus 60 ASflGiag~I~~~GYdG~~Y~iG~~~Gy~i~~fL~A~~LRk~-GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQ 138 (529)
T COG4147 60 ASFLGIAGLIFISGYDGLIYSIGWTGGYPILLFLIAEYLRKL-GKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQ 138 (529)
T ss_pred HhhhchhHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Confidence 445666666666665555544432222222334556666665 78999997654 4445677777777666667777788
Q ss_pred HHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHH----hhhhcccccc
Q 013930 139 LILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVITLG----SIVWTGAFDG 214 (433)
Q Consensus 139 ~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~----~~i~~~~~~~ 214 (433)
++-.+..+..++.... ..-+++..+++........++...+.+.+--+..+.... .+.+....+.
T Consensus 139 mvGaG~li~~l~gv~~-----------~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~ 207 (529)
T COG4147 139 MVGAGLLISLLLGVPY-----------HVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNP 207 (529)
T ss_pred HHhhHHHHHHHhCCCc-----------eeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 8888888888776321 133444455555556677888888887765443332222 2222211110
Q ss_pred cc----------c----ccCcccccCCchhHhHhHhhhccccccchhhHHhhcc-cc--ccchhHHHHHHHHHHHHHHHH
Q 013930 215 VG----------F----HQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMK-KK--HQFSYVLLVCFFLCTFIYASM 277 (433)
Q Consensus 215 ~~----------~----~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p--~~~~~~~~~~~~i~~i~y~~~ 277 (433)
.+ . +...+....++..+.++...--..|...+|++.-..- -| |+-++.+..+...+.++|+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~ 287 (529)
T COG4147 208 NPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILT 287 (529)
T ss_pred chHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 0001111224455555554444456666666654332 23 677899999999999999988
Q ss_pred HhHHHhh
Q 013930 278 AIFGYMM 284 (433)
Q Consensus 278 ~~~gy~~ 284 (433)
-..|+.+
T Consensus 288 ~~ig~~A 294 (529)
T COG4147 288 PIIGAGA 294 (529)
T ss_pred HHHHHHH
Confidence 7777653
No 92
>PRK09928 choline transport protein BetT; Provisional
Probab=95.42 E-value=3.9 Score=42.41 Aligned_cols=26 Identities=12% Similarity=0.028 Sum_probs=21.0
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhch
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGILS 64 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~GiL~ 64 (433)
+.++.-|.++-+..+.++-+|+|++.
T Consensus 88 d~kPefS~~sW~aMLFaAGmGigLmf 113 (679)
T PRK09928 88 QSKPEFSLLSWAAMLFAAGIGIDLMF 113 (679)
T ss_pred CCCCCCCcchHHHHHHHHhhhhhhee
Confidence 34567788888889999999999873
No 93
>PHA02764 hypothetical protein; Provisional
Probab=95.09 E-value=0.68 Score=42.76 Aligned_cols=93 Identities=15% Similarity=-0.027 Sum_probs=61.6
Q ss_pred CCCCCchhHHHH-HHHHhhhhhhhchhHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcC
Q 013930 40 RTTKTSVFKTCF-NGVNALSGVGILSTPYALAS--GGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFG 116 (433)
Q Consensus 40 ~~~~~s~~~~~~-~li~~~iG~GiL~lP~a~~~--~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G 116 (433)
.-|..|..++++ ++-....|.++ +.|+-++. -|...+...++.++++...+.+..+...+.|+...-....++++|
T Consensus 10 LVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYISRAFG 88 (399)
T PHA02764 10 IIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIRTAFS 88 (399)
T ss_pred ceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhHHhhC
Confidence 456778888888 55555555544 55653333 243344555566666666677777777777777766777779999
Q ss_pred ccchhHHHHHHHHHHHH
Q 013930 117 QKGRLIVSVFMNIELYL 133 (433)
Q Consensus 117 ~~~~~~~~~~~~~~~~g 133 (433)
++.+.+..+..+.....
T Consensus 89 P~~GFLvG~a~WLtl~~ 105 (399)
T PHA02764 89 SKFYTIFGISLWLTYVL 105 (399)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 99988888877655433
No 94
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=94.43 E-value=1.1 Score=45.36 Aligned_cols=234 Identities=11% Similarity=0.067 Sum_probs=120.0
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhh-chhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcC
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGI-LSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFG 116 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~Gi-L~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G 116 (433)
...|+..++.....++.+.+|++- +++|....+.|.. ....+.... ......+.......+ .+..+-.|.-++-||
T Consensus 42 l~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~-~~~~~~~~f~Pvf~~-~~v~~~~eYl~~Rf~ 119 (585)
T KOG2349|consen 42 LGGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNALL-SVLLLGWIFIPVFYR-LGVTTMYEYLEKRFG 119 (585)
T ss_pred hcCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHHHH-HHHhhheEEEEEEEe-cCeeehhHHHHHHhc
Confidence 356788888888888888888765 8999888877764 332222111 111122222222222 366777888888888
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHH
Q 013930 117 QKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGV 196 (433)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 196 (433)
+..+.+..+...++.+.-...+...=+-.+.+.... +......+..++.........+|..-+.-.+-.
T Consensus 120 ~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~-----------~~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~ 188 (585)
T KOG2349|consen 120 GRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGI-----------NLYLIVVILGLICVFYTALGGLKAVIWTDVVQT 188 (585)
T ss_pred ccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhcc-----------CceeehHHHHHHHHHHHHhcCeeEEEEhhHHHH
Confidence 886666555555444332222221111111111110 011222223333333344566766666666655
Q ss_pred HHHHHHHHhhhhccccccc---------------------ccccCcccccCCchhHhHhHhhhccccccchhhHHhhccc
Q 013930 197 LASVITLGSIVWTGAFDGV---------------------GFHQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKK 255 (433)
Q Consensus 197 ~~~~~~~~~~i~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~ 255 (433)
...+.....+.+.+..... ..++...+.-|.-++.........|..+++...=+-.+|+
T Consensus 189 ~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~lsl~s 268 (585)
T KOG2349|consen 189 VIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQRYLSLPS 268 (585)
T ss_pred HHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhHHhcccc
Confidence 5555555454444322100 0011111222333344455555666777766555555565
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhHHHhhc
Q 013930 256 KHQFSYVLLVCFFLCTFIYASMAIFGYMMF 285 (433)
Q Consensus 256 p~~~~~~~~~~~~i~~i~y~~~~~~gy~~f 285 (433)
-|+.++..........+......+.|...|
T Consensus 269 lk~ak~~~~~~~~~~~l~~~~~~~~G~i~~ 298 (585)
T KOG2349|consen 269 LKHAKPSLLLFGYGVLLIMFIMVFVGMIIY 298 (585)
T ss_pred HHHhhhhhhhhhhHHHHHHHhhcccceeEe
Confidence 577777777766666666666655555444
No 95
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=94.19 E-value=6.5 Score=39.01 Aligned_cols=24 Identities=17% Similarity=0.073 Sum_probs=18.9
Q ss_pred CCCCchhHHHHHHHHhhhhhhhch
Q 013930 41 TTKTSVFKTCFNGVNALSGVGILS 64 (433)
Q Consensus 41 ~~~~s~~~~~~~li~~~iG~GiL~ 64 (433)
+++-|.++-+..+.++-+|+|++.
T Consensus 34 kPefS~~sW~aMlf~aG~G~gllf 57 (453)
T TIGR00842 34 KPEFSTLSWLAMLFAAGMGIGLMF 57 (453)
T ss_pred CCCCcchHHHHHHHHHhhhhhhhh
Confidence 456677777888889999999874
No 96
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.14 E-value=0.45 Score=46.01 Aligned_cols=50 Identities=14% Similarity=0.352 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 013930 103 NIRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPN 152 (433)
Q Consensus 103 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 152 (433)
+..-..+++++.+|+.|+.+..+.+.+.|+.++++.....+|+++++.+.
T Consensus 253 ~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k 302 (378)
T TIGR00796 253 GAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK 302 (378)
T ss_pred cHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45566788999999999999999999999999999999999999998764
No 97
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=93.84 E-value=7.3 Score=38.37 Aligned_cols=320 Identities=10% Similarity=0.011 Sum_probs=147.9
Q ss_pred chhHHHHHHHHhhhhhhhchhHHHHH-hhh--HH-HHHHHHHHHHHH-HHHHHHHHHchhhCCCCCCHHHHHHHhcCccc
Q 013930 45 SVFKTCFNGVNALSGVGILSTPYALA-SGG--WL-SLILLFFIAAVT-FYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKG 119 (433)
Q Consensus 45 s~~~~~~~li~~~iG~GiL~lP~a~~-~~G--~~-g~i~l~~~~~~~-~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 119 (433)
.....-+.+...-.|+|=|-.|-... ++| |. +.+...+.++.- ..+...+.+ . + .++.|++++.- |+.
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~----~-~-g~~~~l~~rv~-~~f 81 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAK----V-G-GGVDSLSTPIG-KVA 81 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhh----c-C-CCHHHHhhhcc-hHH
Confidence 56777888999999999999998776 477 44 666655555332 222222222 1 2 58899887754 444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHHH
Q 013930 120 RLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLAS 199 (433)
Q Consensus 120 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 199 (433)
..+....+++. .|- +..+-+.-..-++..-.+..+.+......+.+++..+.+.+++ |.=|-+.++....+-..
T Consensus 82 ~~~f~~~i~l~-IGP----~~aiPRtaavsfEm~i~p~~~~~~~~~~ifs~iFF~i~~~l~l-~p~klvd~iGK~LTP~L 155 (439)
T PRK15433 82 GVLLATVCYLA-VGP----LFATPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSL-YPGKLLDTVGNFLAPLK 155 (439)
T ss_pred HHHHHHHHHHH-Hhh----ccccCCccccchhheeeccCCcccHHHHHHHHHHHHHHHHHHc-ChhhHHHHhHHHHHHHH
Confidence 44443333321 221 1111111111111100000000000122455566666666664 34444555555544444
Q ss_pred HHHHHhhhhcccccccccc-cCcccc--c-C-C------chhHhHhHhhhccccccchhhHHh-hccccccc----hhHH
Q 013930 200 VITLGSIVWTGAFDGVGFH-QKGTLV--N-W-K------GIPSSISLYAFCYCAHPVFPTLYT-SMKKKHQF----SYVL 263 (433)
Q Consensus 200 ~~~~~~~i~~~~~~~~~~~-~~~~~~--~-~-~------~~~~~~~~~~faf~~~~~i~~i~~-~m~~p~~~----~~~~ 263 (433)
+..+..++..++....+.. .+.... + + + +-..+++...|+-.... .+.+ ..+++|+. .++.
T Consensus 156 L~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~---~i~~~G~~~~~~~~k~t~~ag 232 (439)
T PRK15433 156 IIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVN---AARSRGVTEARLLTRYTVWAG 232 (439)
T ss_pred HHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHH
Confidence 4444445544444322211 110111 0 1 1 22345666666643222 2232 24455433 3566
Q ss_pred HHHHHHHHHHHHHHHhHHHhh---cccc-chhHhhhcCCC---CchhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHccc
Q 013930 264 LVCFFLCTFIYASMAIFGYMM---FGSE-VQSQITLNLPT---SKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRAST 336 (433)
Q Consensus 264 ~~~~~i~~i~y~~~~~~gy~~---fg~~-~~~~~l~~~~~---~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~ 336 (433)
.++.....++|...+..|... +++. ..+.++..... .++...+......+..+++--=....+-+.+++.++
T Consensus 233 ~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~- 311 (439)
T PRK15433 233 LMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP- 311 (439)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-
Confidence 677777788888888888654 2222 22333333211 111111111222222222222233444444444431
Q ss_pred CCCCCCceehhhHHHHHHHHHHHhhccchHHHHHHHhhhhhhhhhhhhhhHHHHHH
Q 013930 337 QYSKRPYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKI 392 (433)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~l~G~~~~~~~~~ilP~~~~l~~ 392 (433)
.+......+..+.++.+|.. .++.++++ ....+.++.|....+..
T Consensus 312 -----isY~~~v~i~~l~S~~lSn~--G~~~II~~----s~PiL~~iYP~~IvLil 356 (439)
T PRK15433 312 -----LSYRTLVFILGGFSMVVSNL--GLSQLIQI----SVPVLTAIYPPCIALVV 356 (439)
T ss_pred -----CcHHHHHHHHHHHHHHHHHh--HHHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 22222233333444444432 35666654 55678888888777654
No 98
>PRK09950 putative transporter; Provisional
Probab=93.72 E-value=8.6 Score=38.75 Aligned_cols=24 Identities=21% Similarity=0.045 Sum_probs=20.1
Q ss_pred CCCCchhHHHHHHHHhhhhhhhch
Q 013930 41 TTKTSVFKTCFNGVNALSGVGILS 64 (433)
Q Consensus 41 ~~~~s~~~~~~~li~~~iG~GiL~ 64 (433)
+++-|.++-+..+.++-+|+|++.
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllf 104 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLY 104 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHH
Confidence 567788888889999999999874
No 99
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=92.80 E-value=0.58 Score=45.83 Aligned_cols=68 Identities=16% Similarity=0.419 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcc
Q 013930 103 NIRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTV 180 (433)
Q Consensus 103 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~ 180 (433)
+.+=..+++++.+|+.|..+..+.+.+.|+-++++.....+|+.++..+..+ ++.|.++++++...++
T Consensus 259 g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kis----------Y~~~v~i~~i~S~~ia 326 (427)
T PF05525_consen 259 GAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKIS----------YKVWVIIFTIFSFIIA 326 (427)
T ss_pred HHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----------hHHHHHHHHHHHHHHH
Confidence 3345677888999999999999999999999999999999999999998332 4466666666666555
No 100
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=91.72 E-value=13 Score=35.58 Aligned_cols=238 Identities=9% Similarity=0.023 Sum_probs=126.0
Q ss_pred CCCCCchhHHHHHHHHhhhhhhh-chhHHHHHhhh--HH-HHHHHHHHHHHHHH-HHHHHHHchhhCCCCCCHHHHHHHh
Q 013930 40 RTTKTSVFKTCFNGVNALSGVGI-LSTPYALASGG--WL-SLILLFFIAAVTFY-SGLLIKRCMDVDSNIRSYPDIGDRA 114 (433)
Q Consensus 40 ~~~~~s~~~~~~~li~~~iG~Gi-L~lP~a~~~~G--~~-g~i~l~~~~~~~~~-s~~~l~~~~~~~~~~~~y~~l~~~~ 114 (433)
.+|+.+-+-..+....+-+|+.- ++=|.+-.+.| |+ =...-+-...+++. -..-+.+-++++ +.-|..|+-++=
T Consensus 37 gnRsmgg~VlAmt~~aTYisaSSFigGpgaayk~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~-nAltI~D~l~~R 115 (473)
T COG4145 37 GNRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILAREY-NALTINDLLFAR 115 (473)
T ss_pred ccCcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-CCeeHHHHHHHH
Confidence 45667777777777777666554 45566555543 54 11111222222211 122333334444 677888887664
Q ss_pred c-CccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHH
Q 013930 115 F-GQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSA 193 (433)
Q Consensus 115 ~-G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 193 (433)
+ ++...++..+...+.+.+..++.++-.++.++...... +..-.+++...+.........+.....-.
T Consensus 116 Y~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gid-----------Y~tgL~ifa~~V~iYt~fGGFRAvvltD~ 184 (473)
T COG4145 116 YQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGID-----------YTTGLLIFAVSVAIYTAFGGFRAVVLTDT 184 (473)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCC-----------chhhHHHHHHHHHHHHhhcceeeeehHHH
Confidence 3 55677788888888888999999999988888876432 22344556666666666666766554443
Q ss_pred HH----HHHHHHHHHhhhhcccc--cc----ccccc----Ccc-cc--cCCchhHhHhHhhhccccccchhhHHhhcccc
Q 013930 194 SG----VLASVITLGSIVWTGAF--DG----VGFHQ----KGT-LV--NWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK 256 (433)
Q Consensus 194 ~~----~~~~~~~~~~~i~~~~~--~~----~~~~~----~~~-~~--~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 256 (433)
+. .+..+..++.+++.+.- +. .+.|+ |.. .. +..-+.+..-.++++-.|++....=.-..||.
T Consensus 185 IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kDs 264 (473)
T COG4145 185 IQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHTAVRCIAFKDS 264 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcHHHHHHHhccch
Confidence 32 33333344444544321 00 01111 111 11 11112233334455555555443333345565
Q ss_pred ccchhHHHHHHHHHHHHHHH---HHhHHHhhccccc
Q 013930 257 HQFSYVLLVCFFLCTFIYAS---MAIFGYMMFGSEV 289 (433)
Q Consensus 257 ~~~~~~~~~~~~i~~i~y~~---~~~~gy~~fg~~~ 289 (433)
|-.++...++..++.++-+. .|..|...+.|-+
T Consensus 265 kaih~gmiigt~vi~il~~gmhl~G~~graViPdlt 300 (473)
T COG4145 265 KAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLT 300 (473)
T ss_pred hHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCC
Confidence 66666666666666665554 4555566665543
No 101
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=90.71 E-value=3.6 Score=39.70 Aligned_cols=68 Identities=16% Similarity=0.352 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcc
Q 013930 103 NIRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTV 180 (433)
Q Consensus 103 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~ 180 (433)
+.+=..+..++.||+.|..+....+.+.|.-++++....++|+.++.+|..+ +..|..++.+..+.++
T Consensus 261 G~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~S----------Y~~~v~if~i~sflva 328 (431)
T COG1114 261 GGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKLS----------YKTWVIIFTLISFLVA 328 (431)
T ss_pred hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----------HHHHHHHHHHHHHHHH
Confidence 4455677888999999999999999999999999999999999999998554 3466666666665554
No 102
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=90.08 E-value=26 Score=36.41 Aligned_cols=115 Identities=15% Similarity=0.084 Sum_probs=59.5
Q ss_pred HHhhcccccCCCchHHHHHHHHHHHHHHHHhhhhccccc-----cccc-ccC--cccccCCchhHhHhHhhhcc-ccccc
Q 013930 175 IILPTVWLDNLSLLSYVSASGVLASVITLGSIVWTGAFD-----GVGF-HQK--GTLVNWKGIPSSISLYAFCY-CAHPV 245 (433)
Q Consensus 175 ~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~~~~-----~~~~-~~~--~~~~~~~~~~~~~~~~~faf-~~~~~ 245 (433)
++..+++.|.+|....+..+....--.+++++.+++..- +... ..+ ....+.+-+-.+...++|++ .|+..
T Consensus 225 liv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvTL~Ga~~Gi~~~l~~~~~kL~~~~vW~dA~~QiffSlsi~~G~ 304 (629)
T KOG3660|consen 225 LIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVTLPGAGDGINFYLTPDWTKLLDPQVWGDAATQIFFSLSIGFGG 304 (629)
T ss_pred HHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHccCCCHHHHHHHHHhhhhHhhcChhhHHHHHHhHHHhHHHHHhh
Confidence 455666678888777776655444444444444443321 1110 011 11334445667788888888 45555
Q ss_pred hhhHHhhcccc----cc-chhHHHHHHHHHHHHHHHHHhHHHhhccccc
Q 013930 246 FPTLYTSMKKK----HQ-FSYVLLVCFFLCTFIYASMAIFGYMMFGSEV 289 (433)
Q Consensus 246 i~~i~~~m~~p----~~-~~~~~~~~~~i~~i~y~~~~~~gy~~fg~~~ 289 (433)
+..+.+..|.. || .-....-+......-...+++.|+++.-..+
T Consensus 305 li~laSynk~~nN~yrDa~lv~~~~~~tS~~~g~~iFsilGfla~~~~v 353 (629)
T KOG3660|consen 305 LIALASYNKFNNNCYRDAILVVLLDTITSLLAGFAIFSILGFLAHEQGV 353 (629)
T ss_pred hheeeeeeccCCcceeeeeeeeecccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55555554433 22 1223333334444555667778888765444
No 103
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=89.92 E-value=21 Score=35.06 Aligned_cols=315 Identities=14% Similarity=0.112 Sum_probs=147.9
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhh-chhHHHHHhhhHHHHHHHH---HHHHHHHHHHHHHHHchhhCCCCCCHH----HH
Q 013930 39 SRTTKTSVFKTCFNGVNALSGVGI-LSTPYALASGGWLSLILLF---FIAAVTFYSGLLIKRCMDVDSNIRSYP----DI 110 (433)
Q Consensus 39 ~~~~~~s~~~~~~~li~~~iG~Gi-L~lP~a~~~~G~~g~i~l~---~~~~~~~~s~~~l~~~~~~~~~~~~y~----~l 110 (433)
++++..|.+|+++.-+.+.+|+|= -+...|.+..|.-.+..+= +.|..+-|.=..|..-.+++.+...|. -.
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 567789999999999999999996 4677777777753222222 344445554444444333332233331 12
Q ss_pred HHHhcC-ccchhHHHHHHHHHHH-HHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCch
Q 013930 111 GDRAFG-QKGRLIVSVFMNIELY-LVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLL 188 (433)
Q Consensus 111 ~~~~~G-~~~~~~~~~~~~~~~~-g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 188 (433)
.++-+| ||...+..+...+.+. ..+......+++.+++-++.. ....-+...++.-+.....+|.+
T Consensus 138 i~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~~~------------~~~~gi~la~l~~~VI~GGi~rI 205 (452)
T COG1115 138 IEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFGIP------------PLVTGIVLALLVALVIFGGIKRI 205 (452)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcCCc------------HHHHHHHHHHHHHHHHHcchHHH
Confidence 233333 4444444433333322 245666666666666655432 13333333333333336788888
Q ss_pred HHHHHHHHHHHHH--HHHhhhhccc-ccccc----------cccCcccccCC------chhHhHhHhhhcc-ccccchhh
Q 013930 189 SYVSASGVLASVI--TLGSIVWTGA-FDGVG----------FHQKGTLVNWK------GIPSSISLYAFCY-CAHPVFPT 248 (433)
Q Consensus 189 ~~~s~~~~~~~~~--~~~~~i~~~~-~~~~~----------~~~~~~~~~~~------~~~~~~~~~~faf-~~~~~i~~ 248 (433)
..++..-+-...+ ....+++... .+..+ ...+....... .+.+.+.--+||- .|....|.
T Consensus 206 a~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~ 285 (452)
T COG1115 206 AKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPI 285 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchh
Confidence 8877765443332 2222211111 01110 00000011111 2345666778888 56777777
Q ss_pred HHhhcc--ccccchhHHHHHHHH-----HHHHHHHHHhHHHhhccccchhHhh-----h-cCCCCchhHHHHHHHHHHHH
Q 013930 249 LYTSMK--KKHQFSYVLLVCFFL-----CTFIYASMAIFGYMMFGSEVQSQIT-----L-NLPTSKLSSRLAIYTTLVNP 315 (433)
Q Consensus 249 i~~~m~--~p~~~~~~~~~~~~i-----~~i~y~~~~~~gy~~fg~~~~~~~l-----~-~~~~~~~~~~i~~~~~~~~~ 315 (433)
.+.+-+ +|-|=..+-..+..+ |+.--+.+=+.|-+..++..++..+ . .+++ +...+..+.+.+..
T Consensus 286 aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~--~G~~fv~i~l~lFa 363 (452)
T COG1115 286 AAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGS--WGSYFVAIALFLFA 363 (452)
T ss_pred HHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCc--cHHHHHHHHHHHHH
Confidence 776555 452212222333333 3333223323333323332122222 1 1222 33333333333333
Q ss_pred hhhhhhhhhhHHHHHHHHcccCCCCCCceehhhHHHHHHHHHHHhhc-cchHHHHHH
Q 013930 316 IAKYALMVTPIVNSIKMRASTQYSKRPYSLLISTPLVISTVIVALVV-PFFGYLMTL 371 (433)
Q Consensus 316 ~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~-~~~~~v~~l 371 (433)
.++.--..+-...+++-+. ++|..-...|...+....+-+..- +....+.++
T Consensus 364 fTTIlg~yyyge~~~~fl~----~~k~~~~~~r~~~l~~v~~Ga~~~l~~vW~laD~ 416 (452)
T COG1115 364 FTTILGWYYYGEKNIEFLF----GSKKAILLYRLIVLAMVFLGAVLSLDLVWNLADL 416 (452)
T ss_pred HHHHHHHHHHHHHHHHHHh----CCchHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 4444444455555666554 222334566766666655555442 334444444
No 104
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=89.83 E-value=24 Score=35.62 Aligned_cols=25 Identities=12% Similarity=-0.016 Sum_probs=20.7
Q ss_pred CCCCchhHHHHHHHHhhhhhhhchh
Q 013930 41 TTKTSVFKTCFNGVNALSGVGILST 65 (433)
Q Consensus 41 ~~~~s~~~~~~~li~~~iG~GiL~l 65 (433)
++.-|.++-+..+.++-+|+|++.-
T Consensus 83 kPefs~~sW~aMlf~aG~G~gllfw 107 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVLFW 107 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhhhh
Confidence 5677888888899999999998743
No 105
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=86.83 E-value=32 Score=33.54 Aligned_cols=82 Identities=11% Similarity=0.033 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHH--HHHHHhhcc
Q 013930 103 NIRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVI--IALIILPTV 180 (433)
Q Consensus 103 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~pl~ 180 (433)
..++..|.+++.++|+.++...+...+...+.......-.+.-++-+++. + .+....+ ...+.+.+.
T Consensus 62 Tg~~l~~~~r~~~~~~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~g~-p----------~~~~v~~~~~~~~~~~~~ 130 (390)
T TIGR01197 62 TGLDLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLLSHI-P----------LWGGVLITIVDVFLFLFL 130 (390)
T ss_pred cCCCHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-c----------HHHHHHHHHHHHHHHHHH
Confidence 34789999999999877666555444444555555555555555544431 1 1122222 222333333
Q ss_pred cccCCCchHHHHHHH
Q 013930 181 WLDNLSLLSYVSASG 195 (433)
Q Consensus 181 ~~~~l~~l~~~s~~~ 195 (433)
..++.+.+..+-...
T Consensus 131 ~~~~yr~~E~~~~~l 145 (390)
T TIGR01197 131 DKPGLRILEAFVALL 145 (390)
T ss_pred HhCCceeHHHHHHHH
Confidence 456777777764443
No 106
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=85.91 E-value=4.4 Score=39.89 Aligned_cols=64 Identities=14% Similarity=0.245 Sum_probs=52.6
Q ss_pred CHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcc
Q 013930 106 SYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTV 180 (433)
Q Consensus 106 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~ 180 (433)
=.....++.+|++++.+..+.+++.|+-++++.....+|++++.++ . +++.+.++..++..+++
T Consensus 266 il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-i----------sY~~~v~i~~l~S~~lS 329 (439)
T PRK15433 266 ILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-L----------SYRTLVFILGGFSMVVS 329 (439)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C----------cHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999999999999999999999999875 2 24466667777777766
No 107
>PLN02680 carbon-monoxide oxygenase
Probab=83.40 E-value=11 Score=33.48 Aligned_cols=98 Identities=9% Similarity=0.153 Sum_probs=59.9
Q ss_pred ccccCCchhHhHhHhhhccccccchhhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHhhccccchhHhhhcCCCCc
Q 013930 222 TLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQITLNLPTSK 301 (433)
Q Consensus 222 ~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~i~~i~y~~~~~~gy~~fg~~~~~~~l~~~~~~~ 301 (433)
..+||..+....+.+.. .+...+ . ++..+.+|+.+|.+....-...++..++|+.....+.++..-+-+ +.-..
T Consensus 45 ~~Fn~HPlLM~~Gfi~l--~geAIL-~-yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nf--ySlHS 118 (232)
T PLN02680 45 LIFNVHPVLMVIGLVLL--NGEAML-A-YKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNF--YSLHS 118 (232)
T ss_pred ceEechHHHHHHHHHHH--HHHHHh-c-cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccc--ccHHH
Confidence 36777777776666552 232222 2 344555678889999999999999999999765555554322222 22234
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhh
Q 013930 302 LSSRLAIYTTLVNPIAKYALMVTP 325 (433)
Q Consensus 302 ~~~~i~~~~~~~~~~~s~p~~~~~ 325 (433)
|....+..+..++-+..+....+|
T Consensus 119 WlGl~t~iL~~lQ~~~Gf~~f~~P 142 (232)
T PLN02680 119 WLGLACLFLFSLQWAAGFVTFWYP 142 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 555555666666666666555555
No 108
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=73.16 E-value=23 Score=30.13 Aligned_cols=107 Identities=8% Similarity=0.080 Sum_probs=57.8
Q ss_pred ccccccCcccccCCchhHhHhHhhhccccccchhhHHh--hccccccchhHHHHHHHHHHHHHHHHHhHHHhhccccchh
Q 013930 214 GVGFHQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYT--SMKKKHQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQS 291 (433)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~--~m~~p~~~~~~~~~~~~i~~i~y~~~~~~gy~~fg~~~~~ 291 (433)
+..++.+...+||..+....+.+.. .-+.+..... .-+.+|+.+|.+....-...++..++|+.....+.++..
T Consensus 25 G~~w~~~~~~Fn~HP~lMv~Gfi~L---~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~- 100 (179)
T cd08762 25 GFAWDGSSKNFNWHPVLMVTGMVVL---YGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHH- 100 (179)
T ss_pred ccCCCCCCCceeehHHHHHHHHHHH---HHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-
Confidence 3444433335666655554444333 2333332221 112356777889999999999999999977776665432
Q ss_pred HhhhcCCCCchhHHHHHHHHHHHHhhhhhhhhhh
Q 013930 292 QITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTP 325 (433)
Q Consensus 292 ~~l~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~ 325 (433)
.-+.+.-.+|....+..+..++-+..+.....|
T Consensus 101 -~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p 133 (179)
T cd08762 101 -TANLYSLHSWVGICTVALFTCQWVMGFTSFLLP 133 (179)
T ss_pred -ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 222222223554445555555655555544444
No 109
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=70.87 E-value=1.2e+02 Score=30.37 Aligned_cols=257 Identities=16% Similarity=0.108 Sum_probs=122.1
Q ss_pred ccCCCCCCCCchhHHHHHHHHhhhhhhhchhHHHHHhhh--HH-HHHHHHHHHHHHHHHHHHHHHchhh-CCCCCCHHHH
Q 013930 35 HYDDSRTTKTSVFKTCFNGVNALSGVGILSTPYALASGG--WL-SLILLFFIAAVTFYSGLLIKRCMDV-DSNIRSYPDI 110 (433)
Q Consensus 35 ~~~~~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G--~~-g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~~y~~l 110 (433)
.+.++.+|.=|+++-...=....++.+..-....--+.| |- +++.+.+.-.+...- ++-..+- ..-.-+++-.
T Consensus 47 ~Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~f---~~lns~~G~~yhIsFpv~ 123 (572)
T KOG2466|consen 47 KPVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAIF---LVLNSRPGSDYHISFPVL 123 (572)
T ss_pred CcCCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHHH---HHHccCCCcccccceeee
Confidence 334456778899998888888888888887777777777 44 666655433322221 1211110 1112466666
Q ss_pred HHHhcCccc---hhHHHHHHHHHHHHHHHHHHHHhhh----hhhhhccCCcccccccc---cC-CchhHHHHHHHHHhhc
Q 013930 111 GDRAFGQKG---RLIVSVFMNIELYLVATGFLILEGD----NLENLFPNTAIELGGFT---LG-GKQCFVVIIALIILPT 179 (433)
Q Consensus 111 ~~~~~G~~~---~~~~~~~~~~~~~g~~~~y~i~~~~----~l~~~~~~~~~~~~~~~---~~-~~~~~~~i~~~~~~pl 179 (433)
.+..||-++ ..+..+...+..+|..+ -+-++ .++...+...+-.+... .. .......++-++.+|.
T Consensus 124 sR~sFGiygS~~pIi~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~ 200 (572)
T KOG2466|consen 124 SRSSFGIYGSLWPIINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPF 200 (572)
T ss_pred eeeehhhhHhHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhe
Confidence 667777554 34444455555554432 11222 22333332221111111 11 1223334555667777
Q ss_pred ccccC--CCchHHHHHHHHHHHHHHHHhhhhccccc-c--cccccCcccccCC---chhHhHhHhhhcc-ccccchhhHH
Q 013930 180 VWLDN--LSLLSYVSASGVLASVITLGSIVWTGAFD-G--VGFHQKGTLVNWK---GIPSSISLYAFCY-CAHPVFPTLY 250 (433)
Q Consensus 180 ~~~~~--l~~l~~~s~~~~~~~~~~~~~~i~~~~~~-~--~~~~~~~~~~~~~---~~~~~~~~~~faf-~~~~~i~~i~ 250 (433)
.+.|- ++++-.++...... ..+..+++..... + .-.+.+....+.. .+..++...+=.| ....|.|...
T Consensus 201 ~~~~p~~ir~lf~~ka~~t~f--A~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFs 278 (572)
T KOG2466|consen 201 YWFPPYKIRHLFTWKAVLTPF--AAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFS 278 (572)
T ss_pred eeccHHHhhhHHHHHHhhhHH--HHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhH
Confidence 65543 34444444433333 3333344433221 1 1112122222222 2233333332223 3455667888
Q ss_pred hhccccccchhHHHH----HHHHHHHHHHHHHhHHHhhcccc--chhHhhhcCCC
Q 013930 251 TSMKKKHQFSYVLLV----CFFLCTFIYASMAIFGYMMFGSE--VQSQITLNLPT 299 (433)
Q Consensus 251 ~~m~~p~~~~~~~~~----~~~i~~i~y~~~~~~gy~~fg~~--~~~~~l~~~~~ 299 (433)
+.-|+|.+..-.-.+ .+.+..++=++.+..++-.||.+ .+-+++.++.+
T Consensus 279 RF~ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~ 333 (572)
T KOG2466|consen 279 RFAKSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLD 333 (572)
T ss_pred hhcCCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhc
Confidence 888888554333333 33333333444455667889965 34456666643
No 110
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=67.70 E-value=1.3e+02 Score=29.65 Aligned_cols=53 Identities=19% Similarity=0.381 Sum_probs=43.5
Q ss_pred eehhhHHHHHHHHHHHhhccc-hHHHHHHHhhhhhhhhhhhhhhHHHHHHhccc
Q 013930 344 SLLISTPLVISTVIVALVVPF-FGYLMTLVGAFLSVTASVILPCLCYLKISGAY 396 (433)
Q Consensus 344 ~~~~~~~~~~~~~~ia~~~~~-~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~~ 396 (433)
|..........+.+.++..|. +....+.+|.+...+.+-++|.+++++-++..
T Consensus 324 r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~ 377 (415)
T COG0814 324 RKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLI 377 (415)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556777788888888888875 77888888888888889999999999886655
No 111
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=65.54 E-value=1e+02 Score=31.28 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCC
Q 013930 103 NIRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNT 153 (433)
Q Consensus 103 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~ 153 (433)
......++-....||++...+..++++..+..+++-.+..+...-.+-.+.
T Consensus 323 ~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg 373 (550)
T KOG1289|consen 323 LGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDG 373 (550)
T ss_pred CCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccC
Confidence 356788888899999999989999999999999999998888887776543
No 112
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=65.14 E-value=1.6e+02 Score=29.81 Aligned_cols=28 Identities=21% Similarity=0.102 Sum_probs=21.2
Q ss_pred CCCCCCCchhHHHHHHHHhhhhhhhchh
Q 013930 38 DSRTTKTSVFKTCFNGVNALSGVGILST 65 (433)
Q Consensus 38 ~~~~~~~s~~~~~~~li~~~iG~GiL~l 65 (433)
+++++.-|.++-...+.++.+|+|++..
T Consensus 82 ~~~~PEfs~~SW~aMLFaAGmGigl~fw 109 (537)
T COG1292 82 DDEKPEFSTLSWLAMLFAAGMGIGLLFW 109 (537)
T ss_pred CCCCCCcchhHHHHHHHHcccCceeeEe
Confidence 3455567777788889999999998743
No 113
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=62.08 E-value=1.6e+02 Score=28.80 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=45.5
Q ss_pred CCchhHHHHHHHHhhhhhhhchhHHHHHh-hh---HHHHHHHHHHHHHH-HHHHHHHHHchhhCCCCCCHHHHHHHhcCc
Q 013930 43 KTSVFKTCFNGVNALSGVGILSTPYALAS-GG---WLSLILLFFIAAVT-FYSGLLIKRCMDVDSNIRSYPDIGDRAFGQ 117 (433)
Q Consensus 43 ~~s~~~~~~~li~~~iG~GiL~lP~a~~~-~G---~~g~i~l~~~~~~~-~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 117 (433)
+.+.+..-+.+...-.|+|=+-.|-...+ .| |......++.++.- ..+...+.+ . + +++.++.++. ||
T Consensus 4 ~k~~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~----~-g-~~~~~l~~~i-~~ 76 (431)
T COG1114 4 KKDIIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVAL----Y-G-GGVESLATRI-GP 76 (431)
T ss_pred chhHHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhc----c-C-CCHHHHhhhc-cc
Confidence 44556677888999999999999987654 66 33444444444322 112111111 2 2 3899988875 45
Q ss_pred cchhHHHHH
Q 013930 118 KGRLIVSVF 126 (433)
Q Consensus 118 ~~~~~~~~~ 126 (433)
|.+.+....
T Consensus 77 ~fg~~f~~~ 85 (431)
T COG1114 77 WFGVLFAIA 85 (431)
T ss_pred hHHHHHHHH
Confidence 555544443
No 114
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=54.06 E-value=39 Score=28.06 Aligned_cols=100 Identities=11% Similarity=0.148 Sum_probs=58.8
Q ss_pred ccccCCchhHhHhHhhhccccccchhhHHhh--ccccccchhHHHHHHHHHHHHHHHHHhHHHhhccccchhHhhhcCCC
Q 013930 222 TLVNWKGIPSSISLYAFCYCAHPVFPTLYTS--MKKKHQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQITLNLPT 299 (433)
Q Consensus 222 ~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~--m~~p~~~~~~~~~~~~i~~i~y~~~~~~gy~~fg~~~~~~~l~~~~~ 299 (433)
..+||..+....+.+. . .-+.+...... .+.+|+.+|.+....-...++..++|+.....+.++...+-+.++
T Consensus 10 ~~Fn~HPlLm~~Gfi~--l-~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fySl-- 84 (153)
T cd08765 10 AEFNWHPVLMVIGFIF--I-QGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMYSL-- 84 (153)
T ss_pred CeeechHHHHHHHHHH--H-HHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccH--
Confidence 3566666666555443 1 22222222211 122367788889999888888888898777766554332222222
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhhhhH
Q 013930 300 SKLSSRLAIYTTLVNPIAKYALMVTPI 326 (433)
Q Consensus 300 ~~~~~~i~~~~~~~~~~~s~p~~~~~~ 326 (433)
..|...+...+..++-+..+....+|.
T Consensus 85 HSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 85 HSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 245555666677777777777666664
No 115
>TIGR00909 2A0306 amino acid transporter.
Probab=53.12 E-value=1.9e+02 Score=28.44 Aligned_cols=48 Identities=13% Similarity=-0.038 Sum_probs=40.1
Q ss_pred CCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 013930 105 RSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPN 152 (433)
Q Consensus 105 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 152 (433)
....+..++..|+++..+..+...+..++...+.....++.+..+..+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 264 APLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456677788888888899999999999999999999888888877644
No 116
>PLN02810 carbon-monoxide oxygenase
Probab=52.21 E-value=1.4e+02 Score=26.55 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=56.6
Q ss_pred cccCCchhHhHhHhhhccccccchhhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHhhccccchhHhhhcCCCCch
Q 013930 223 LVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQITLNLPTSKL 302 (433)
Q Consensus 223 ~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~i~~i~y~~~~~~gy~~fg~~~~~~~l~~~~~~~~ 302 (433)
.+||..+....+ |.|..-+.+... +..+.+|+.+|.+....-...++..++|+.....+.++..-+-+.++ .+|
T Consensus 46 ~FN~HPvlMv~G---fi~l~geAIL~Y-r~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySL--HSW 119 (231)
T PLN02810 46 IFNLHPVLMLIG---LIIIGGEAIMSY-KSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSL--HSW 119 (231)
T ss_pred eeeehHHHHHHH---HHHHhhHHHHHh-hccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeH--HHH
Confidence 567766655444 334333333333 44555677789999999999999999999777666654332222222 245
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhh
Q 013930 303 SSRLAIYTTLVNPIAKYALMVTP 325 (433)
Q Consensus 303 ~~~i~~~~~~~~~~~s~p~~~~~ 325 (433)
....+..+..++-+..+-...+|
T Consensus 120 lGl~tv~Lf~lQw~~Gf~~Fl~P 142 (231)
T PLN02810 120 LGIGIISLYGIQWIYGFIVFFFP 142 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 55455555555655555444444
No 117
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.75 E-value=2.5e+02 Score=27.82 Aligned_cols=11 Identities=27% Similarity=0.217 Sum_probs=8.1
Q ss_pred HHHHhhhhhhh
Q 013930 52 NGVNALSGVGI 62 (433)
Q Consensus 52 ~li~~~iG~Gi 62 (433)
.+.++.+|+|.
T Consensus 293 ~Lfsa~lGsG~ 303 (593)
T KOG1277|consen 293 LLFSAVLGSGA 303 (593)
T ss_pred HHHHHHhcccc
Confidence 46677888884
No 118
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=50.02 E-value=1.1e+02 Score=27.36 Aligned_cols=105 Identities=7% Similarity=0.014 Sum_probs=58.7
Q ss_pred cccccCc-ccccCCchhHhHhHhhhccccccchhhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHhhccccchhHh
Q 013930 215 VGFHQKG-TLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQI 293 (433)
Q Consensus 215 ~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~i~~i~y~~~~~~gy~~fg~~~~~~~ 293 (433)
..++.++ ..+|+..+..-++ |-|..=+.+....-.-...|+.+|.+....=.+.+...++|+.....+.+...-+-
T Consensus 45 law~~~~~~~fnlHP~lMviG---fI~l~GeAiL~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~N 121 (245)
T KOG1619|consen 45 LAWSSSPNKEFNLHPVLMVIG---FIYLQGEAILIYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIAN 121 (245)
T ss_pred cCCCCCcchhcCcchHHHHHH---HHHhccceeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence 4444333 3555555544444 44433333333333233458899999999999999999999988887765544211
Q ss_pred hhcCCCCchhHHHHHHHHHHHHhhhhhhhhh
Q 013930 294 TLNLPTSKLSSRLAIYTTLVNPIAKYALMVT 324 (433)
Q Consensus 294 l~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~ 324 (433)
.. .-.+|..........++-+..+-...+
T Consensus 122 fy--SLHSWlGl~~v~ly~~Q~v~GF~tfl~ 150 (245)
T KOG1619|consen 122 FY--SLHSWLGLCVVILYSLQWVFGFFTFLF 150 (245)
T ss_pred ee--eHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12 223455444445555555544443333
No 119
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=49.79 E-value=74 Score=24.99 Aligned_cols=66 Identities=18% Similarity=0.131 Sum_probs=34.9
Q ss_pred CCchhHHHHHHHHhhhhhhhchhHHHHHhh---h-HH-HHHHHHHHHHHH----HHHHHHHHHchhhCCCCCCHHHH
Q 013930 43 KTSVFKTCFNGVNALSGVGILSTPYALASG---G-WL-SLILLFFIAAVT----FYSGLLIKRCMDVDSNIRSYPDI 110 (433)
Q Consensus 43 ~~s~~~~~~~li~~~iG~GiL~lP~a~~~~---G-~~-g~i~l~~~~~~~----~~s~~~l~~~~~~~~~~~~y~~l 110 (433)
+.+|......+.-..+|+..+.+....... | .. ++.++ +.|+++ .|-..++..+.+.+ +..+|.++
T Consensus 38 k~pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~ll-ilG~L~fIPG~Y~~~i~y~a~rg~-~Gysf~~I 112 (115)
T PF05915_consen 38 KIPWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALL-ILGILCFIPGFYHTRIAYYAWRGY-KGYSFDDI 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHH-HHHHHHHhccHHHHHHHHHHHcCC-CCCCHhhC
Confidence 445777777777777887777777544321 2 23 33333 334443 33344444444433 45666654
No 120
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=42.85 E-value=2.2e+02 Score=24.46 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=24.2
Q ss_pred HHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhhC
Q 013930 69 LASGGWL-SLILLFFIAAVTFYSGLLIKRCMDVD 101 (433)
Q Consensus 69 ~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~ 101 (433)
|+.-..+ |+|.+++.++..-++++++.+-..++
T Consensus 118 f~~nA~~~GlItlll~a~vgGfamy~my~y~yr~ 151 (226)
T COG4858 118 FQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRM 151 (226)
T ss_pred HhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444566 88888888888888888877765543
No 121
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=40.52 E-value=1.2e+02 Score=24.91 Aligned_cols=99 Identities=10% Similarity=0.085 Sum_probs=55.8
Q ss_pred ccccCCchhHhHhHhhhccccccchhhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHhhccccchhHhhhcCCCCc
Q 013930 222 TLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQITLNLPTSK 301 (433)
Q Consensus 222 ~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~i~~i~y~~~~~~gy~~fg~~~~~~~l~~~~~~~ 301 (433)
..++|..+....+.+... -+.+... +..+.+||.+|.+....-....+..++|+.....+.++...+-+.++ ..
T Consensus 6 ~~Fn~HP~lM~~gfi~l~---~eAiL~~-r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~Sl--HS 79 (144)
T cd08766 6 LIFNVHPVLMVIGFIFLA---GEAILAY-KTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSL--HS 79 (144)
T ss_pred ceeeccHHHHHHHHHHHH---HHHHHHh-hccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccH--HH
Confidence 355665555554432221 2222222 23455677788899999999999999999666655554332222222 23
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhH
Q 013930 302 LSSRLAIYTTLVNPIAKYALMVTPI 326 (433)
Q Consensus 302 ~~~~i~~~~~~~~~~~s~p~~~~~~ 326 (433)
|...++..+..++.+..+....+|-
T Consensus 80 wlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 80 WLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5555555566666666655455553
No 122
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=39.20 E-value=3.3e+02 Score=25.45 Aligned_cols=39 Identities=8% Similarity=0.169 Sum_probs=20.8
Q ss_pred cchhhHHhhc--cccccchhHHHHHHHHHHHHHHHHHhHHH
Q 013930 244 PVFPTLYTSM--KKKHQFSYVLLVCFFLCTFIYASMAIFGY 282 (433)
Q Consensus 244 ~~i~~i~~~m--~~p~~~~~~~~~~~~i~~i~y~~~~~~gy 282 (433)
...+.+.+.. +|+++.++....+.....++-..++...+
T Consensus 51 ~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (342)
T TIGR00797 51 ATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGY 91 (342)
T ss_pred hHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444 33456666666666666655555544443
No 123
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=37.68 E-value=4.3e+02 Score=26.43 Aligned_cols=48 Identities=10% Similarity=0.203 Sum_probs=34.6
Q ss_pred CCHHHHHHHhcCc-cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 013930 105 RSYPDIGDRAFGQ-KGRLIVSVFMNIELYLVATGFLILEGDNLENLFPN 152 (433)
Q Consensus 105 ~~y~~l~~~~~G~-~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 152 (433)
..+.++.+..+|. ++..+......+..++...+.....++.+..+-.+
T Consensus 289 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ard 337 (482)
T TIGR00907 289 QPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRD 337 (482)
T ss_pred ChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777787887 56666677777777787778888777777766543
No 124
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=36.39 E-value=41 Score=21.40 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHhhcccc
Q 013930 260 SYVLLVCFFLCTFIYASMAIFGYMMFGSE 288 (433)
Q Consensus 260 ~~~~~~~~~i~~i~y~~~~~~gy~~fg~~ 288 (433)
..+...++.+..++..+.|..-|.+||+.
T Consensus 5 e~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 5 SPALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred chhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 34566677777777777777778889864
No 125
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=35.80 E-value=2.7e+02 Score=23.55 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=10.7
Q ss_pred hhhhhhhchhHHHHH
Q 013930 56 ALSGVGILSTPYALA 70 (433)
Q Consensus 56 ~~iG~GiL~lP~a~~ 70 (433)
+-+|.+++..|++..
T Consensus 47 T~v~P~~ll~Pf~~g 61 (173)
T PF11085_consen 47 TEVGPNFLLEPFALG 61 (173)
T ss_pred cccccChhhhhhhcc
Confidence 556778888887754
No 126
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=35.27 E-value=3.1e+02 Score=24.09 Aligned_cols=37 Identities=8% Similarity=-0.023 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcccCCCC
Q 013930 304 SRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYSK 340 (433)
Q Consensus 304 ~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~ 340 (433)
..-.+....+..+.+.|...+-....+..-+.+++++
T Consensus 62 ~~~lk~s~~~~~~~~~P~~~yq~w~Fi~PgL~~~Er~ 98 (215)
T PF00902_consen 62 FTYLKLSFFLGLIISLPYILYQIWAFIAPGLYKHERR 98 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHH
Confidence 3345566677888999999887777776655444443
No 127
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=35.13 E-value=74 Score=28.35 Aligned_cols=76 Identities=17% Similarity=0.252 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHHHHhhccchHHHHHHH---------hhhhhhhhhhhhhhHHHHHHhccc----ccchhHHHHHHHHHHH
Q 013930 346 LISTPLVISTVIVALVVPFFGYLMTLV---------GAFLSVTASVILPCLCYLKISGAY----RRYGIEMIAILGIVSI 412 (433)
Q Consensus 346 ~~~~~~~~~~~~ia~~~~~~~~v~~l~---------G~~~~~~~~~ilP~~~~l~~~~~~----~~~~~~~~~~~~~~~~ 412 (433)
+-+-+.++.++++|..++.++.++... |+.+|..+.++= |....+.. .-....+|+-|+++++
T Consensus 157 vGnd~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vl 232 (262)
T KOG4812|consen 157 VGNDGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVL 232 (262)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHH
Confidence 344556667777888777777666553 556655555442 32222211 0112247888899999
Q ss_pred HHHHHhHHHHHHH
Q 013930 413 GFIVAAIGTYVSL 425 (433)
Q Consensus 413 g~~~~~~g~~~~i 425 (433)
|+++..-|++.=+
T Consensus 233 G~ll~lr~~i~Yi 245 (262)
T KOG4812|consen 233 GLLLFLRGFINYI 245 (262)
T ss_pred HHHHHHHHHHhHH
Confidence 9999988886543
No 128
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=33.43 E-value=41 Score=21.14 Aligned_cols=27 Identities=15% Similarity=0.355 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcccc
Q 013930 262 VLLVCFFLCTFIYASMAIFGYMMFGSE 288 (433)
Q Consensus 262 ~~~~~~~i~~i~y~~~~~~gy~~fg~~ 288 (433)
+...++.+..++..+.|...|.+||+.
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 345566677777777777788899853
No 129
>PRK11403 hypothetical protein; Provisional
Probab=32.43 E-value=2.2e+02 Score=22.06 Aligned_cols=62 Identities=15% Similarity=0.105 Sum_probs=43.4
Q ss_pred HHHHhhhhhhhhhhhhhhHHHHHHhcccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 013930 369 MTLVGAFLSVTASVILPCLCYLKISGAYRRYGIEMIAILGIVSIGFIVAAIGTYVSLVQIIQ 430 (433)
Q Consensus 369 ~~l~G~~~~~~~~~ilP~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~i~~l~~ 430 (433)
+|==|-..+..+.-.+|+.-+.|.-|.+.....-.-.++...+.++.+..+|.+++=...-|
T Consensus 30 LneKGYyf~vL~~GlF~~vs~qk~vrd~~~~~~y~~~cw~~~llsi~LL~vGl~NA~l~lsE 91 (113)
T PRK11403 30 LSGKGYFLGVLMTATFGNYAYLRAEKLGQLDDFFIHICQLVALITIGLLFIGVLNAPINAYE 91 (113)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 33345555556666788888888877663334456778888899999999999887555444
No 130
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=32.01 E-value=2.6e+02 Score=25.69 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=23.7
Q ss_pred CchhHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHH-HHHHHHHHHc
Q 013930 44 TSVFKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVT-FYSGLLIKRC 97 (433)
Q Consensus 44 ~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~-~~s~~~l~~~ 97 (433)
.|.+++.+.-+...+| ..++..|.+ |.++.++...+. ....+...+.
T Consensus 108 Dslf~~tl~pI~~~i~-------~~la~~Gn~lGpil~~~~~~~~~~~~r~~~~~~ 156 (264)
T PF03613_consen 108 DSLFWGTLRPILASIA-------ASLALQGNILGPILFLLLYNIIHFFIRYFGFFL 156 (264)
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544444443 345666765 777665544333 4444444443
No 131
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=31.51 E-value=4e+02 Score=24.18 Aligned_cols=36 Identities=8% Similarity=-0.002 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHcccCCCC
Q 013930 305 RLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYSK 340 (433)
Q Consensus 305 ~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~ 340 (433)
.-.+....+....+.|...+.+...+.--+.+++++
T Consensus 80 ~~ikls~~~g~~~a~P~i~yqiw~Fi~PgLy~~Er~ 115 (249)
T CHL00182 80 SSIKISFYTGLLISSPFIIYQIILFILPGLTKKERK 115 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 344566677888999999887777766555444443
No 132
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=30.88 E-value=1.2e+02 Score=21.99 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=12.9
Q ss_pred CCchhHHHHHHHHhhhhhhhchhHHHHH
Q 013930 43 KTSVFKTCFNGVNALSGVGILSTPYALA 70 (433)
Q Consensus 43 ~~s~~~~~~~li~~~iG~GiL~lP~a~~ 70 (433)
+.+............+|...+.......
T Consensus 36 ~~~~r~~~~~~~~~v~gl~llv~G~~~~ 63 (82)
T PF11239_consen 36 RPSRRRRVLGVLLVVVGLALLVAGVVLS 63 (82)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444555555554444443
No 133
>PRK11281 hypothetical protein; Provisional
Probab=30.84 E-value=6.6e+02 Score=28.53 Aligned_cols=29 Identities=10% Similarity=0.234 Sum_probs=22.6
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHhhccc
Q 013930 259 FSYVLLVCFFLCTFIYASMAIFGYMMFGS 287 (433)
Q Consensus 259 ~~~~~~~~~~i~~i~y~~~~~~gy~~fg~ 287 (433)
-++++..+...+.-..+.+..+||+.+..
T Consensus 542 T~~al~~t~l~alp~~l~~~~~g~~~~~~ 570 (1113)
T PRK11281 542 TPKAILITLLLALPVTLIFLAVGLILLTD 570 (1113)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45788888888888888888889877653
No 134
>CHL00020 psbN photosystem II protein N
Probab=30.80 E-value=41 Score=21.09 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcccc
Q 013930 262 VLLVCFFLCTFIYASMAIFGYMMFGSE 288 (433)
Q Consensus 262 ~~~~~~~i~~i~y~~~~~~gy~~fg~~ 288 (433)
+...++.+..++..+.|..-|.+||+.
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 455666667777777777778888864
No 135
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=30.37 E-value=1.3e+02 Score=24.92 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=34.4
Q ss_pred HhhhhhhhhhhhhhhHHHHHHhcccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 013930 372 VGAFLSVTASVILPCLCYLKISGAYRRYGIEMIAILGIVSIGFIVAAIGTYVSLVQIIQ 430 (433)
Q Consensus 372 ~G~~~~~~~~~ilP~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~i~~l~~ 430 (433)
.|+..+....|..|.+.+.--.+..+.-+..+....+.+++|+..++.++..+-....+
T Consensus 35 ~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k~~y~ 93 (152)
T PF07954_consen 35 LGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGKYQYN 93 (152)
T ss_pred HHHHHHHHHHHhhHHHHHHHhcccccCCcCCccCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567888999876653111111111111445567788888888888777666553
No 136
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=29.21 E-value=4.6e+02 Score=26.13 Aligned_cols=29 Identities=10% Similarity=0.066 Sum_probs=21.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhHHHh
Q 013930 255 KKHQFSYVLLVCFFLCTFIYASMAIFGYM 283 (433)
Q Consensus 255 ~p~~~~~~~~~~~~i~~i~y~~~~~~gy~ 283 (433)
|+++.++....+......+-..++.+-+.
T Consensus 312 ~~~~a~~~~~~~~~~~~~~~~~~~~i~~~ 340 (455)
T COG0534 312 NYKRARRAARLALKLSLLIALLIALLLLL 340 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44778888888888888777776665554
No 137
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=29.10 E-value=1.1e+02 Score=26.49 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=43.4
Q ss_pred hHHHHHHHhhhhhhhhhhhhhhHHHHHHhccc-------c--cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 013930 365 FGYLMTLVGAFLSVTASVILPCLCYLKISGAY-------R--RYGIEMIAILGIVSIGFIVAAIGTYVSLVQIIQ 430 (433)
Q Consensus 365 ~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~~-------~--~~~~~~~~~~~~~~~g~~~~~~g~~~~i~~l~~ 430 (433)
+..-.=..|++.+.-+..++|+...+..+++. + ..+..-....+...+|++.+..+..-+...+.+
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344445666777788899999999887763 0 123344556666777777777777777666654
No 138
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=29.06 E-value=5.9e+02 Score=25.39 Aligned_cols=129 Identities=12% Similarity=0.102 Sum_probs=63.7
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHhHHHhhccccchhHhhhcCCC-CchhHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 013930 253 MKKKHQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQITLNLPT-SKLSSRLAIYTTLVNPIAKYALMVTPIVNSIK 331 (433)
Q Consensus 253 m~~p~~~~~~~~~~~~i~~i~y~~~~~~gy~~fg~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~ 331 (433)
-||+++.+++...+..+..++-+.++...+.. .++.+.-+.. ++.......++-. ..+...+..+ ...++
T Consensus 86 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~ll~~l~~~~~v~~~a~~Yl~i-~~~~~~~~~~---~~~~~ 156 (455)
T COG0534 86 AGDRKKAKRVLGQGLLLALLLGLLLAILLLFF-----AEPLLRLLGAPAEVLELAAEYLRI-ILLGAPFALL---SFVLS 156 (455)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHcCCCHhHHHHHHHHHHH-HHHHHHHHHH---HHHHH
Confidence 34557888888888888888888887777662 3344444432 2222222222222 2222222222 23333
Q ss_pred HHcccCCCCCCceehhhHHHHHHHHHHHhhc--cchHHHHHHHhhhhhhhhhhhhhhHHHHHH
Q 013930 332 MRASTQYSKRPYSLLISTPLVISTVIVALVV--PFFGYLMTLVGAFLSVTASVILPCLCYLKI 392 (433)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~--~~~~~v~~l~G~~~~~~~~~ilP~~~~l~~ 392 (433)
..+ +...+.........+..++-.++.... -.++. +++.|+--.+.++..+.++..+..
T Consensus 157 ~~l-r~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~-lGv~GAA~AT~ia~~~~~~~~~~~ 217 (455)
T COG0534 157 GIL-RGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGG-LGVAGAALATVIARWIGALLLLIY 217 (455)
T ss_pred HHH-HhcCCCchhHHHHHHHHHHHHHhhHHHHHhcccc-ccchhHHHHHHHHHHHHHHHHHHH
Confidence 333 222222222333333333333332221 11233 788888777778877776665543
No 139
>PLN02351 cytochromes b561 family protein
Probab=28.42 E-value=2.8e+02 Score=24.99 Aligned_cols=72 Identities=6% Similarity=-0.018 Sum_probs=41.2
Q ss_pred HhhccccccchhHHHHHHHHHHHHHHHHHhHHHhhccccchhHhhhcC-CCCchhHHHHHHHHHHHHhhhhhhhhhh
Q 013930 250 YTSMKKKHQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQITLNL-PTSKLSSRLAIYTTLVNPIAKYALMVTP 325 (433)
Q Consensus 250 ~~~m~~p~~~~~~~~~~~~i~~i~y~~~~~~gy~~fg~~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~s~p~~~~~ 325 (433)
++..|.+|+.+|.+....-...++..++|+.. .|.++. ....|+ .-..|....+..+..++-+..+.....|
T Consensus 73 YR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~~--~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P 145 (242)
T PLN02351 73 HRWLPGSRKTKKSVHLWLQGLALASGVFGIWT--KFHGQD--GIVANFYSLHSWMGLICVSLFGAQWLTGFMSFWHR 145 (242)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHHHHHHHH--HHhccc--CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556666678999988888888888888866 444322 111121 1234554455555555655555444333
No 140
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=28.32 E-value=5.9e+02 Score=25.12 Aligned_cols=249 Identities=15% Similarity=0.056 Sum_probs=116.8
Q ss_pred HHHHHHhhcccccCCCchHHHHHHHHHHHHHHHHhhhhc----ccccccccccCcc-cccCCchhHhHhHhhhccccccc
Q 013930 171 IIALIILPTVWLDNLSLLSYVSASGVLASVITLGSIVWT----GAFDGVGFHQKGT-LVNWKGIPSSISLYAFCYCAHPV 245 (433)
Q Consensus 171 i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~ 245 (433)
++..+.+.- -..+++..+..+..+....+..++.--.. .........+... ..-...++...-....-..+++.
T Consensus 138 ~i~pLsl~k-~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i 216 (411)
T KOG1305|consen 138 IILPLSLLK-NLDSLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPI 216 (411)
T ss_pred HHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceee
Confidence 333344433 35677777777777765555444443322 1111111111110 11112344333344444445555
Q ss_pred hhhHHh-hccccccchhH-----HHHHHHHHHHHHHHHHhHHHhhc--c-ccchhHhhhcCCCCchhHHHHHHHHHHHHh
Q 013930 246 FPTLYT-SMKKKHQFSYV-----LLVCFFLCTFIYASMAIFGYMMF--G-SEVQSQITLNLPTSKLSSRLAIYTTLVNPI 316 (433)
Q Consensus 246 i~~i~~-~m~~p~~~~~~-----~~~~~~i~~i~y~~~~~~gy~~f--g-~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~ 316 (433)
..+..+ +.++=++..+. ..+.......-|+.+|-..-..+ . ++..+..+.+++.......++.......++
T Consensus 217 ~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi 296 (411)
T KOG1305|consen 217 YNELKDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPI 296 (411)
T ss_pred eeeeeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHH
Confidence 555443 45543333222 23333334444444443222211 1 233344555677777888888888888999
Q ss_pred hhhhhhhhhHHHHHHHHcc----cCCCCCCceehhhHHHHHHHHHHHhhccchHHHHHHHhhhhhhhhhhhhhhHHHHHH
Q 013930 317 AKYALMVTPIVNSIKMRAS----TQYSKRPYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKI 392 (433)
Q Consensus 317 ~s~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~l~G~~~~~~~~~ilP~~~~l~~ 392 (433)
..+|+... +++.+....+ .+..++..-.+.-........+.-..+..+-.+++.+++.+.+.+.-.+=-+.-.+.
T Consensus 297 ~~fPlr~~-l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~ 375 (411)
T KOG1305|consen 297 VLFPLRMN-LDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK 375 (411)
T ss_pred HhchHHHH-HHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc
Confidence 99999888 5555544443 555544332222111111112222223444455555554444433322222222221
Q ss_pred hccc-ccchhHHHHHHHHHHHHHHHHhHHH
Q 013930 393 SGAY-RRYGIEMIAILGIVSIGFIVAAIGT 421 (433)
Q Consensus 393 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~ 421 (433)
++++ +.-+..+.......++|+...+...
T Consensus 376 ~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~ 405 (411)
T KOG1305|consen 376 KSREPLGALIFLILGVLLSIIGVAVMIYDL 405 (411)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 2334556677777777777665543
No 141
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=28.14 E-value=2.6e+02 Score=24.69 Aligned_cols=108 Identities=12% Similarity=0.141 Sum_probs=58.0
Q ss_pred cccccCcccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccchhHHHHHHHHHHHHHHHHHhHHHhhccccchhHh
Q 013930 215 VGFHQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQI 293 (433)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~i~~i~y~~~~~~gy~~fg~~~~~~~ 293 (433)
..++.+...++|..+....+.+.+ .-+.+. +++..+++ |+..|.+....-....+..++|+.....+.++.+...
T Consensus 15 ~~~~~~~~~Fn~HP~lM~~Gfi~l---~geAiL-vyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~ 90 (214)
T cd08764 15 FSWTGPGLQFNWHPLLMVLGLIFL---YGNSIL-VYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPI 90 (214)
T ss_pred cccCCCCceEeecHHHHHHHHHHH---HHHHHH-HhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 344443335677666555554322 122222 22233333 4456888888888888888888766555544432222
Q ss_pred hhcCCCCchhHHHHHHHHHHHHhhhhhhhhhhH
Q 013930 294 TLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPI 326 (433)
Q Consensus 294 l~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~ 326 (433)
-+-+.-..+....+..+..++.+..+....+|-
T Consensus 91 ~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~ 123 (214)
T cd08764 91 PNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPG 123 (214)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 222233345555666666677777766555553
No 142
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=27.66 E-value=3.5e+02 Score=28.38 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=36.7
Q ss_pred hhhhhhhchhHHHHH--hhhHH-HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCc
Q 013930 56 ALSGVGILSTPYALA--SGGWL-SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQ 117 (433)
Q Consensus 56 ~~iG~GiL~lP~a~~--~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 117 (433)
.....++......+. +..+. .++.+++..+++..+.+...++-. ++......+.+.+.|-
T Consensus 365 ~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~--~P~~~~~~~sqli~g~ 427 (624)
T PF03169_consen 365 VSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGI--NPVSGLNILSQLIFGL 427 (624)
T ss_pred HHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCC--CcchhhhHHHHHHHHH
Confidence 344445667777773 44555 566666777777777777776533 2455666666666653
No 143
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=26.34 E-value=1.5e+02 Score=19.59 Aligned_cols=29 Identities=7% Similarity=0.173 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhccccch
Q 013930 262 VLLVCFFLCTFIYASMAIFGYMMFGSEVQ 290 (433)
Q Consensus 262 ~~~~~~~i~~i~y~~~~~~gy~~fg~~~~ 290 (433)
-+..-..+..++|+++|+.-+..+.+++.
T Consensus 24 fViik~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 24 FVIIKSVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCccc
Confidence 34555678899999999987777665443
No 144
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=26.04 E-value=7.4e+02 Score=25.52 Aligned_cols=45 Identities=11% Similarity=-0.063 Sum_probs=26.2
Q ss_pred CHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 013930 106 SYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLF 150 (433)
Q Consensus 106 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 150 (433)
.+.+..+...+++.+.++.+......++...+.+...+..+..+-
T Consensus 300 p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~ama 344 (557)
T TIGR00906 300 PFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMA 344 (557)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443345566666666666666666666666666665554
No 145
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=26.00 E-value=4.6e+02 Score=23.10 Aligned_cols=37 Identities=11% Similarity=-0.014 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcccCCCC
Q 013930 304 SRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYSK 340 (433)
Q Consensus 304 ~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~ 340 (433)
..-.+....+....++|...+-....+..-+.++|++
T Consensus 58 ~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgLy~~Er~ 94 (215)
T TIGR00945 58 FTYIKLSLIVGIILSSPVILYQIWAFILPGLYEHERR 94 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 3345566677888999999887777766555444443
No 146
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=25.91 E-value=5.9e+02 Score=24.31 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHhhccccchhH
Q 013930 259 FSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQ 292 (433)
Q Consensus 259 ~~~~~~~~~~i~~i~y~~~~~~gy~~fg~~~~~~ 292 (433)
-.+++..+...+.-.-..+..+||........++
T Consensus 46 T~~al~~tll~alp~pl~~~~~g~~L~~~~~~~~ 79 (340)
T PF12794_consen 46 TPRALLLTLLLALPLPLLLLAIGYLLQFAAWSSP 79 (340)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc
Confidence 4688888888888888999999998775544443
No 147
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=25.30 E-value=1.4e+02 Score=21.99 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=28.9
Q ss_pred hHhhhccccccchhhHHhhcccc-ccchhHHHHHHHHHHHHHHHHHhHHHhhccccchh
Q 013930 234 SLYAFCYCAHPVFPTLYTSMKKK-HQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQS 291 (433)
Q Consensus 234 ~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~i~~i~y~~~~~~gy~~fg~~~~~ 291 (433)
|+...+-.|.....+..+.-.+| .+..|++.+..+ +..+-+++|++.|-+||...++
T Consensus 18 GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSii~F-IlG~vl~lGilifs~y~~C~~~ 75 (91)
T PHA02680 18 GVLLLTAACVFAFVDFSKNTSNVTDYVWRALSVTCF-IVGAVLLLGLFVFSMYRKCSGS 75 (91)
T ss_pred HHHHHHHHHHHhhhhhhccCCCCcchhHHHHHHHHH-HHHHHHHHHHHHHHHhcccCCC
Confidence 33333333444445665555455 344454443333 2334456778888888844433
No 148
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=24.76 E-value=5.9e+02 Score=25.43 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=38.6
Q ss_pred HHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 013930 107 YPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPN 152 (433)
Q Consensus 107 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 152 (433)
..++.++.+|+++..++.+...+..+++..++....++.+..+-.+
T Consensus 270 ~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amard 315 (473)
T TIGR00905 270 MAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKD 315 (473)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6788889999998888998888899999998888888877776543
No 149
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=21.03 E-value=6.4e+02 Score=22.99 Aligned_cols=34 Identities=12% Similarity=-0.015 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHcccCCC
Q 013930 306 LAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYS 339 (433)
Q Consensus 306 i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~ 339 (433)
-.+....+....+.|...+-+...+.--+.++++
T Consensus 71 ~lk~sl~~g~~la~P~ilyqiw~Fi~PgLy~~Er 104 (258)
T PRK10921 71 PIKLTFMVSLILSAPVILYQVWAFIAPALYKHER 104 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 3455666778899999988777766654444443
Done!