Query 013930
Match_columns 433
No_of_seqs 138 out of 1469
Neff 9.8
Searched_HMMs 13730
Date Mon Mar 25 19:45:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013930.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013930hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 97.3 0.069 5.1E-06 50.4 31.3 102 44-146 5-112 (509)
2 d1nekd_ f.21.2.2 (D:) Succinat 5.9 2.9E+02 0.021 18.4 4.0 33 248-280 76-108 (113)
3 d1ppjd2 f.23.11.1 (D:196-241) 5.3 1.3E+02 0.0098 16.8 1.4 7 252-258 2-8 (46)
4 d1x41a1 a.4.1.1 (A:8-54) Trans 5.1 2.8E+02 0.02 15.1 2.9 25 93-118 11-35 (47)
5 d2axti1 f.23.37.1 (I:1-35) Pho 4.3 2.9E+02 0.021 14.1 2.5 20 403-422 5-24 (35)
6 d1q90g_ f.23.26.1 (G:) PetG su 3.2 3.5E+02 0.025 13.2 2.6 15 72-86 7-22 (30)
7 d1mv8a2 c.2.1.6 (A:1-202) GDP- 3.1 1.4E+02 0.01 22.5 0.3 14 56-69 4-17 (202)
8 d1rkla_ f.23.30.1 (A:) Oligosa 3.0 3.8E+02 0.028 13.4 2.3 17 406-422 8-24 (36)
9 d1ofcx1 a.4.1.3 (X:799-850) SA 2.8 2.5E+02 0.019 16.1 1.2 26 93-119 9-34 (52)
10 d1rh5b_ f.23.28.1 (B:) Preprot 2.7 4.9E+02 0.036 15.0 2.4 16 270-285 30-45 (56)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=97.33 E-value=0.069 Score=50.42 Aligned_cols=102 Identities=18% Similarity=0.167 Sum_probs=61.6
Q ss_pred CchhHHHHHHHHhhhhhhh-chhHHHHHh-hhHH----HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCc
Q 013930 44 TSVFKTCFNGVNALSGVGI-LSTPYALAS-GGWL----SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQ 117 (433)
Q Consensus 44 ~s~~~~~~~li~~~iG~Gi-L~lP~a~~~-~G~~----g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 117 (433)
.|..+-++..++..+|.|- .-.|+-..+ .|.. -.+.+++.++=..+.=..+.+..+ ..+...+..+.....+.
T Consensus 5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~-~g~i~~~~~i~~~~~~~ 83 (509)
T d2a65a1 5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGG-AQGHGTTPAIFYLLWRN 83 (509)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTTCCSHHHHHHHHSCS
T ss_pred CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCcccHHHHHHHHhccC
Confidence 5678889999999999986 568998765 4533 333334444433444445555434 34678888888877665
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013930 118 KGRLIVSVFMNIELYLVATGFLILEGDNL 146 (433)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l 146 (433)
+......+...+..+..++-|.+..+-.+
T Consensus 84 ~~~~giG~~~~~~~~~i~~yy~vi~~w~l 112 (509)
T d2a65a1 84 RFAKILGVFGLWIPLVVAIYYVYIESWTL 112 (509)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 43334444444444555555555555433
No 2
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=5.87 E-value=2.9e+02 Score=18.45 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=17.4
Q ss_pred hHHhhccccccchhHHHHHHHHHHHHHHHHHhH
Q 013930 248 TLYTSMKKKHQFSYVLLVCFFLCTFIYASMAIF 280 (433)
Q Consensus 248 ~i~~~m~~p~~~~~~~~~~~~i~~i~y~~~~~~ 280 (433)
.+.++-=++++.++..........+.+.+.|+.
T Consensus 76 ~IieDYi~~~~~r~~~~~~~~~~~~~~~~~~i~ 108 (113)
T d1nekd_ 76 QVLTDYVKPLALRLMLQLVIVVALVVYVIYGFV 108 (113)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333345555666665555555555555543
No 3
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.34 E-value=1.3e+02 Score=16.84 Aligned_cols=7 Identities=0% Similarity=0.230 Sum_probs=3.2
Q ss_pred hcccccc
Q 013930 252 SMKKKHQ 258 (433)
Q Consensus 252 ~m~~p~~ 258 (433)
||.++++
T Consensus 2 e~d~RK~ 8 (46)
T d1ppjd2 2 EHDHRKR 8 (46)
T ss_dssp THHHHHH
T ss_pred chHHHHH
Confidence 4444443
No 4
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.09 E-value=2.8e+02 Score=15.12 Aligned_cols=25 Identities=4% Similarity=0.123 Sum_probs=17.9
Q ss_pred HHHHchhhCCCCCCHHHHHHHhcCcc
Q 013930 93 LIKRCMDVDSNIRSYPDIGDRAFGQK 118 (433)
Q Consensus 93 ~l~~~~~~~~~~~~y~~l~~~~~G~~ 118 (433)
.|.++.+.+ +..++..+++.+-||.
T Consensus 11 ~L~~~v~~~-G~~nW~~Ia~~~~~Rt 35 (47)
T d1x41a1 11 ALLEAVMDC-GFGNWQDVANQMCTKT 35 (47)
T ss_dssp HHHHHHHHT-CTTCHHHHHHHHTTSC
T ss_pred HHHHHHHHH-CCccHHHHHHHcCCCC
Confidence 355555665 6678999999887764
No 5
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.28 E-value=2.9e+02 Score=14.13 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 013930 403 MIAILGIVSIGFIVAAIGTY 422 (433)
Q Consensus 403 ~~~~~~~~~~g~~~~~~g~~ 422 (433)
|+..+.++++.+.+.++|..
T Consensus 5 Ki~Vy~vV~fFv~lFiFGFL 24 (35)
T d2axti1 5 KITVYIVVTFFVLLFVFGFL 24 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred EEehhhHHHHHHHHHHHhhc
Confidence 45566666677777776654
No 6
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.16 E-value=3.5e+02 Score=13.17 Aligned_cols=15 Identities=13% Similarity=0.202 Sum_probs=10.0
Q ss_pred hhHH-HHHHHHHHHHH
Q 013930 72 GGWL-SLILLFFIAAV 86 (433)
Q Consensus 72 ~G~~-g~i~l~~~~~~ 86 (433)
+|.+ |.+-..+.|.+
T Consensus 7 ~GivlGlipiTl~Glf 22 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGLF 22 (30)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHH
Confidence 5777 77777666644
No 7
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.15 E-value=1.4e+02 Score=22.52 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=10.5
Q ss_pred hhhhhhhchhHHHH
Q 013930 56 ALSGVGILSTPYAL 69 (433)
Q Consensus 56 ~~iG~GiL~lP~a~ 69 (433)
+++|.|-+++|.|.
T Consensus 4 ~ViGlG~vGl~~a~ 17 (202)
T d1mv8a2 4 SIFGLGYVGAVCAG 17 (202)
T ss_dssp EEECCSTTHHHHHH
T ss_pred EEECCCHhHHHHHH
Confidence 46788888888764
No 8
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.04 E-value=3.8e+02 Score=13.44 Aligned_cols=17 Identities=6% Similarity=0.106 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhHHHH
Q 013930 406 ILGIVSIGFIVAAIGTY 422 (433)
Q Consensus 406 ~~~~~~~g~~~~~~g~~ 422 (433)
+-+.+.||+.++..-+.
T Consensus 8 n~~~i~fgi~mmtlivi 24 (36)
T d1rkla_ 8 NSLAITFGIVMMTLIVI 24 (36)
T ss_dssp GHHHHHHHHHHHHHHHH
T ss_pred CcEEeehhHHHHHHHHH
Confidence 45567778777655443
No 9
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=2.81 E-value=2.5e+02 Score=16.07 Aligned_cols=26 Identities=8% Similarity=0.041 Sum_probs=18.6
Q ss_pred HHHHchhhCCCCCCHHHHHHHhcCccc
Q 013930 93 LIKRCMDVDSNIRSYPDIGDRAFGQKG 119 (433)
Q Consensus 93 ~l~~~~~~~~~~~~y~~l~~~~~G~~~ 119 (433)
..+++..++ +..++..++..+-||..
T Consensus 9 ~Fi~a~eky-GR~d~~~Ia~e~~~Kt~ 34 (52)
T d1ofcx1 9 QFIKANEKY-GRDDIDNIAKDVEGKTP 34 (52)
T ss_dssp HHHHHHHHH-CTTCHHHHTTSSTTCCH
T ss_pred HHHHHHHHH-HHhhHHHHHHHhcCCCH
Confidence 345666666 67899999988877643
No 10
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.66 E-value=4.9e+02 Score=15.02 Aligned_cols=16 Identities=19% Similarity=0.490 Sum_probs=8.9
Q ss_pred HHHHHHHHHhHHHhhc
Q 013930 270 CTFIYASMAIFGYMMF 285 (433)
Q Consensus 270 ~~i~y~~~~~~gy~~f 285 (433)
+.+=.+++|++||..+
T Consensus 30 ~~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 30 TALGISLLGIIGYIIH 45 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344456677776654
Done!