Query 013931
Match_columns 433
No_of_seqs 544 out of 4372
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:49:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013931.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013931hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 2.2E-25 4.7E-30 245.3 19.9 116 73-189 452-567 (968)
2 PLN00113 leucine-rich repeat r 99.8 1.5E-20 3.3E-25 207.0 16.4 165 23-191 22-210 (968)
3 PLN03150 hypothetical protein; 99.8 3E-20 6.6E-25 192.9 17.4 149 25-181 367-527 (623)
4 KOG1187 Serine/threonine prote 99.4 2.1E-13 4.5E-18 132.5 6.9 70 358-432 61-132 (361)
5 KOG0617 Ras suppressor protein 99.4 8.2E-15 1.8E-19 121.9 -4.2 114 72-189 32-146 (264)
6 KOG0617 Ras suppressor protein 99.4 3.2E-14 6.9E-19 118.5 -2.6 115 73-191 56-171 (264)
7 PLN03150 hypothetical protein; 99.3 4.2E-12 9.2E-17 132.3 9.5 93 98-190 419-511 (623)
8 KOG0472 Leucine-rich repeat pr 99.1 1.7E-11 3.6E-16 115.0 1.8 108 72-182 434-541 (565)
9 PF14580 LRR_9: Leucine-rich r 99.1 1E-10 2.2E-15 101.1 4.4 105 74-183 20-127 (175)
10 KOG4194 Membrane glycoprotein 99.1 1.2E-11 2.6E-16 120.9 -2.0 113 74-186 270-382 (873)
11 KOG4194 Membrane glycoprotein 99.1 2.1E-11 4.5E-16 119.2 -0.9 116 74-190 318-437 (873)
12 KOG0444 Cytoskeletal regulator 99.0 3.1E-11 6.6E-16 118.9 0.0 106 74-182 127-258 (1255)
13 KOG0472 Leucine-rich repeat pr 98.9 9E-11 2E-15 110.1 -2.3 112 75-192 185-297 (565)
14 KOG0196 Tyrosine kinase, EPH ( 98.9 1.6E-09 3.4E-14 109.6 5.4 73 356-432 604-691 (996)
15 PF13855 LRR_8: Leucine rich r 98.9 2E-09 4.3E-14 76.5 3.5 57 99-155 3-59 (61)
16 PF13855 LRR_8: Leucine rich r 98.8 3.1E-09 6.7E-14 75.5 3.8 61 73-133 1-61 (61)
17 KOG0444 Cytoskeletal regulator 98.8 3.9E-10 8.3E-15 111.3 -1.4 106 74-182 269-375 (1255)
18 PF08263 LRRNT_2: Leucine rich 98.8 5.3E-09 1.1E-13 68.4 4.4 41 29-71 2-43 (43)
19 KOG0618 Serine/threonine phosp 98.8 7.6E-10 1.6E-14 113.8 0.5 105 74-182 360-465 (1081)
20 PF14580 LRR_9: Leucine-rich r 98.8 3.8E-09 8.3E-14 91.3 4.5 99 73-176 42-147 (175)
21 PRK15387 E3 ubiquitin-protein 98.8 7.4E-09 1.6E-13 108.7 6.8 80 99-187 384-463 (788)
22 KOG0618 Serine/threonine phosp 98.8 4.8E-10 1E-14 115.2 -2.5 104 73-181 383-488 (1081)
23 KOG4237 Extracellular matrix p 98.8 1.2E-09 2.6E-14 102.5 -0.1 108 74-182 68-177 (498)
24 PRK15370 E3 ubiquitin-protein 98.8 1.1E-07 2.3E-12 100.5 14.2 100 75-187 180-279 (754)
25 KOG1259 Nischarin, modulator o 98.7 1.9E-09 4.1E-14 97.8 -0.1 103 74-182 285-387 (490)
26 KOG3653 Transforming growth fa 98.7 2.3E-07 5E-12 89.3 12.5 46 376-430 216-263 (534)
27 KOG1026 Nerve growth factor re 98.7 6.1E-08 1.3E-12 99.5 8.2 53 375-431 491-549 (774)
28 KOG1259 Nischarin, modulator o 98.6 4.3E-09 9.2E-14 95.6 -0.5 114 65-184 293-414 (490)
29 KOG0532 Leucine-rich repeat (L 98.6 8E-09 1.7E-13 101.2 0.9 115 75-196 145-259 (722)
30 PRK15370 E3 ubiquitin-protein 98.6 7.6E-08 1.7E-12 101.5 7.9 102 73-187 199-300 (754)
31 PLN03210 Resistant to P. syrin 98.6 1.1E-07 2.4E-12 106.4 9.2 111 73-186 611-721 (1153)
32 cd00116 LRR_RI Leucine-rich re 98.6 2.8E-08 6.1E-13 95.5 3.2 113 72-184 80-208 (319)
33 KOG0193 Serine/threonine prote 98.6 9.8E-08 2.1E-12 94.4 6.8 61 361-431 388-448 (678)
34 cd00116 LRR_RI Leucine-rich re 98.6 3.3E-08 7.2E-13 94.9 3.2 110 74-183 52-179 (319)
35 KOG4579 Leucine-rich repeat (L 98.5 3.5E-09 7.7E-14 85.4 -3.3 106 73-182 27-136 (177)
36 PLN03210 Resistant to P. syrin 98.5 4.2E-07 9.1E-12 101.8 10.0 113 73-189 589-701 (1153)
37 KOG0532 Leucine-rich repeat (L 98.5 1.3E-08 2.8E-13 99.8 -1.9 111 72-189 120-230 (722)
38 KOG4237 Extracellular matrix p 98.5 5.8E-08 1.3E-12 91.4 1.6 98 85-182 261-359 (498)
39 PRK15387 E3 ubiquitin-protein 98.4 6.8E-07 1.5E-11 94.2 8.6 54 73-134 222-275 (788)
40 KOG1025 Epidermal growth facto 98.4 1.4E-06 2.9E-11 89.3 9.7 52 376-431 702-758 (1177)
41 KOG1094 Discoidin domain recep 98.4 1.3E-06 2.8E-11 86.2 9.3 54 374-431 542-595 (807)
42 KOG4579 Leucine-rich repeat (L 98.3 5.7E-08 1.2E-12 78.5 -1.4 110 73-186 53-163 (177)
43 COG4886 Leucine-rich repeat (L 98.3 3.1E-07 6.7E-12 91.2 2.9 103 74-180 117-220 (394)
44 KOG4658 Apoptotic ATPase [Sign 98.3 4.4E-07 9.5E-12 97.4 3.1 107 73-180 545-653 (889)
45 KOG0192 Tyrosine kinase specif 98.2 1.9E-06 4.2E-11 83.6 6.6 53 376-432 47-100 (362)
46 COG4886 Leucine-rich repeat (L 98.2 4.3E-07 9.3E-12 90.2 1.0 106 74-183 141-246 (394)
47 KOG1859 Leucine-rich repeat pr 98.2 1.3E-07 2.8E-12 95.3 -3.6 103 74-182 188-292 (1096)
48 PF12799 LRR_4: Leucine Rich r 98.1 1.8E-06 3.9E-11 56.5 3.0 36 98-134 2-37 (44)
49 PF12799 LRR_4: Leucine Rich r 98.1 2.7E-06 5.8E-11 55.7 3.3 36 122-158 2-37 (44)
50 KOG0595 Serine/threonine-prote 98.1 4.3E-06 9.2E-11 79.4 5.5 53 376-431 16-69 (429)
51 KOG2052 Activin A type IB rece 98.1 4.2E-06 9.1E-11 80.3 5.4 47 376-431 217-265 (513)
52 KOG0659 Cdk activating kinase 98.0 1.4E-05 3.1E-10 71.9 5.8 53 376-431 8-61 (318)
53 KOG1859 Leucine-rich repeat pr 98.0 2.7E-07 5.8E-12 93.2 -5.7 103 74-183 165-268 (1096)
54 KOG0197 Tyrosine kinases [Sign 97.9 1.1E-05 2.3E-10 79.2 5.4 53 374-432 210-262 (468)
55 PLN00034 mitogen-activated pro 97.9 0.00037 8.1E-09 68.0 16.0 53 376-432 80-133 (353)
56 KOG1644 U2-associated snRNP A' 97.9 1.3E-05 2.8E-10 69.4 4.4 102 74-179 43-150 (233)
57 cd06624 STKc_ASK Catalytic dom 97.9 9E-06 1.9E-10 75.9 3.4 61 366-431 2-65 (268)
58 PRK09188 serine/threonine prot 97.9 2.1E-05 4.5E-10 76.5 5.8 61 372-432 18-82 (365)
59 KOG0531 Protein phosphatase 1, 97.8 5.5E-06 1.2E-10 82.7 1.5 105 72-182 94-199 (414)
60 KOG4658 Apoptotic ATPase [Sign 97.8 1.8E-05 3.9E-10 85.3 4.8 111 74-187 524-636 (889)
61 KOG0531 Protein phosphatase 1, 97.8 4.8E-06 1E-10 83.1 0.3 107 74-186 73-179 (414)
62 KOG0597 Serine-threonine prote 97.8 3E-05 6.4E-10 76.7 5.5 54 376-432 8-62 (808)
63 KOG0593 Predicted protein kina 97.8 4.2E-05 9.1E-10 70.2 5.9 54 376-432 8-62 (396)
64 KOG4236 Serine/threonine prote 97.8 4.4E-05 9.5E-10 74.9 6.3 55 374-431 567-623 (888)
65 cd05067 PTKc_Lck_Blk Catalytic 97.8 3.3E-05 7.1E-10 71.7 5.4 51 376-432 12-62 (260)
66 KOG0600 Cdc2-related protein k 97.8 4E-05 8.6E-10 74.8 5.9 54 376-432 123-177 (560)
67 KOG0194 Protein tyrosine kinas 97.8 3.1E-05 6.7E-10 76.9 5.2 54 376-431 163-221 (474)
68 KOG1035 eIF-2alpha kinase GCN2 97.7 2.4E-05 5.2E-10 83.7 4.4 58 370-431 477-537 (1351)
69 cd05064 PTKc_EphR_A10 Catalyti 97.7 4.7E-05 1E-09 71.0 5.6 53 376-432 11-67 (266)
70 PHA02988 hypothetical protein; 97.7 4.2E-05 9E-10 72.3 4.9 68 358-431 11-78 (283)
71 PLN03224 probable serine/threo 97.7 3.5E-05 7.5E-10 78.3 4.4 61 371-431 144-232 (507)
72 KOG0199 ACK and related non-re 97.7 5E-05 1.1E-09 76.9 5.2 53 376-432 116-172 (1039)
73 cd05631 STKc_GRK4 Catalytic do 97.7 4.5E-05 9.9E-10 72.0 4.8 54 376-431 6-60 (285)
74 cd05072 PTKc_Lyn Catalytic dom 97.7 5.6E-05 1.2E-09 70.1 5.0 51 376-432 12-62 (261)
75 cd05033 PTKc_EphR Catalytic do 97.6 8.6E-05 1.9E-09 69.1 6.2 57 372-432 4-66 (266)
76 cd05068 PTKc_Frk_like Catalyti 97.6 4.7E-05 1E-09 70.7 4.2 50 376-431 12-61 (261)
77 cd05102 PTKc_VEGFR3 Catalytic 97.6 4.4E-05 9.6E-10 73.9 4.2 53 376-432 13-72 (338)
78 KOG1644 U2-associated snRNP A' 97.6 7.5E-05 1.6E-09 64.7 5.0 103 76-183 22-127 (233)
79 KOG0594 Protein kinase PCTAIRE 97.6 0.00011 2.4E-09 68.8 6.5 54 376-432 17-71 (323)
80 KOG3207 Beta-tubulin folding c 97.6 1.6E-05 3.4E-10 76.3 0.7 61 120-181 245-313 (505)
81 cd05096 PTKc_DDR1 Catalytic do 97.6 0.0001 2.2E-09 70.2 6.2 53 376-432 11-80 (304)
82 KOG1095 Protein tyrosine kinas 97.6 6.1E-05 1.3E-09 80.7 5.0 54 374-431 696-755 (1025)
83 KOG0615 Serine/threonine prote 97.6 7.9E-05 1.7E-09 71.1 5.1 57 376-432 178-237 (475)
84 cd06632 STKc_MEKK1_plant Catal 97.6 0.00014 3.1E-09 67.0 6.8 57 376-432 6-63 (258)
85 cd05114 PTKc_Tec_Rlk Catalytic 97.6 8.7E-05 1.9E-09 68.7 5.1 50 376-431 10-59 (256)
86 cd05104 PTKc_Kit Catalytic dom 97.6 8.7E-05 1.9E-09 73.1 5.4 53 376-432 41-100 (375)
87 cd05108 PTKc_EGFR Catalytic do 97.6 0.0001 2.2E-09 70.8 5.5 53 376-432 13-70 (316)
88 cd05070 PTKc_Fyn_Yrk Catalytic 97.6 0.00013 2.8E-09 67.7 6.1 51 376-432 12-62 (260)
89 cd05103 PTKc_VEGFR2 Catalytic 97.6 9.2E-05 2E-09 72.0 5.2 52 376-431 13-71 (343)
90 cd05090 PTKc_Ror1 Catalytic do 97.6 0.00012 2.7E-09 68.8 5.9 53 376-432 11-68 (283)
91 PF07714 Pkinase_Tyr: Protein 97.6 7.8E-05 1.7E-09 69.3 4.4 52 376-431 5-61 (259)
92 KOG0658 Glycogen synthase kina 97.5 0.0001 2.2E-09 69.3 4.7 48 376-432 30-78 (364)
93 cd05147 RIO1_euk RIO kinase fa 97.5 0.00018 3.9E-09 63.7 6.1 30 376-405 3-32 (190)
94 cd08228 STKc_Nek6 Catalytic do 97.5 0.00017 3.8E-09 67.0 6.2 55 376-432 8-63 (267)
95 cd05626 STKc_LATS2 Catalytic d 97.5 0.00012 2.5E-09 72.4 5.0 55 376-432 7-62 (381)
96 cd08224 STKc_Nek6_Nek7 Catalyt 97.5 0.00015 3.4E-09 67.2 5.7 54 376-431 8-62 (267)
97 cd05049 PTKc_Trk Catalytic dom 97.5 0.0002 4.4E-09 67.0 6.5 52 376-431 11-68 (280)
98 cd05034 PTKc_Src_like Catalyti 97.5 0.00014 3E-09 67.4 5.3 50 376-431 12-61 (261)
99 KOG0591 NIMA (never in mitosis 97.5 0.00011 2.3E-09 66.9 4.0 53 376-431 25-78 (375)
100 cd07853 STKc_NLK Catalytic dom 97.5 0.00016 3.5E-09 71.1 5.7 53 376-431 6-59 (372)
101 cd05612 STKc_PRKX_like Catalyt 97.5 0.00014 2.9E-09 69.0 5.0 55 376-432 7-62 (291)
102 cd05105 PTKc_PDGFR_alpha Catal 97.5 0.00019 4.1E-09 71.3 6.3 53 376-432 43-102 (400)
103 cd07879 STKc_p38delta_MAPK13 C 97.5 0.00018 3.8E-09 69.9 5.9 67 363-432 2-75 (342)
104 cd05081 PTKc_Jak2_Jak3_rpt2 Ca 97.5 0.00023 5E-09 66.9 6.4 52 376-432 10-66 (284)
105 cd05599 STKc_NDR_like Catalyti 97.5 0.00012 2.6E-09 71.8 4.5 55 376-432 7-62 (364)
106 cd06637 STKc_TNIK Catalytic do 97.5 0.00019 4.1E-09 67.0 5.7 58 369-432 3-64 (272)
107 cd07877 STKc_p38alpha_MAPK14 C 97.5 0.00015 3.3E-09 70.5 5.1 67 362-431 7-76 (345)
108 KOG0201 Serine/threonine prote 97.5 0.00017 3.6E-09 69.4 5.2 51 376-430 19-70 (467)
109 cd05148 PTKc_Srm_Brk Catalytic 97.4 0.00016 3.5E-09 67.0 5.1 57 370-431 4-62 (261)
110 KOG0663 Protein kinase PITSLRE 97.4 0.00017 3.7E-09 67.1 4.9 54 376-432 82-136 (419)
111 cd05605 STKc_GRK4_like Catalyt 97.4 0.00016 3.4E-09 68.3 4.8 54 376-431 6-60 (285)
112 cd05632 STKc_GRK5 Catalytic do 97.4 0.0002 4.2E-09 67.6 5.5 54 376-431 6-60 (285)
113 cd05050 PTKc_Musk Catalytic do 97.4 0.00022 4.8E-09 67.2 5.8 56 372-431 5-68 (288)
114 KOG3207 Beta-tubulin folding c 97.4 4.2E-05 9.2E-10 73.4 0.8 110 73-184 222-341 (505)
115 cd06652 STKc_MEKK2 Catalytic d 97.4 0.00026 5.7E-09 65.8 6.1 56 376-431 8-64 (265)
116 cd05106 PTKc_CSF-1R Catalytic 97.4 0.00017 3.6E-09 71.1 4.9 52 376-431 44-102 (374)
117 cd06651 STKc_MEKK3 Catalytic d 97.4 0.0003 6.5E-09 65.5 6.4 57 376-432 8-65 (266)
118 cd05043 PTK_Ryk Pseudokinase d 97.4 0.00024 5.1E-09 66.7 5.7 53 376-432 12-69 (280)
119 cd07878 STKc_p38beta_MAPK11 Ca 97.4 0.00032 7E-09 68.1 6.7 59 371-432 14-75 (343)
120 cd05074 PTKc_Tyro3 Catalytic d 97.4 0.00026 5.6E-09 66.0 5.9 53 376-431 5-61 (273)
121 cd07871 STKc_PCTAIRE3 Catalyti 97.4 0.00026 5.5E-09 66.9 5.8 53 376-432 11-64 (288)
122 cd05091 PTKc_Ror2 Catalytic do 97.4 0.0003 6.4E-09 66.1 6.2 53 376-432 11-69 (283)
123 KOG0575 Polo-like serine/threo 97.4 0.00024 5.1E-09 71.1 5.5 55 376-432 24-79 (592)
124 cd08229 STKc_Nek7 Catalytic do 97.4 0.00038 8.2E-09 64.7 6.7 55 376-432 8-63 (267)
125 cd07872 STKc_PCTAIRE2 Catalyti 97.4 0.00027 5.9E-09 67.5 5.9 53 376-432 12-65 (309)
126 cd06620 PKc_MAPKK_Byr1_like Ca 97.4 0.00042 9.2E-09 65.2 7.1 52 376-431 11-63 (284)
127 KOG0580 Serine/threonine prote 97.4 6.3E-05 1.4E-09 66.8 1.3 58 372-431 22-82 (281)
128 KOG0577 Serine/threonine prote 97.4 0.0003 6.6E-09 70.1 6.1 54 376-431 32-86 (948)
129 cd07848 STKc_CDKL5 Catalytic d 97.4 0.00025 5.3E-09 66.8 5.4 54 376-432 7-61 (287)
130 PTZ00263 protein kinase A cata 97.4 0.00018 3.9E-09 69.5 4.6 55 376-432 24-79 (329)
131 cd07869 STKc_PFTAIRE1 Catalyti 97.4 0.00022 4.7E-09 68.0 5.0 52 376-431 11-63 (303)
132 PTZ00284 protein kinase; Provi 97.4 9E-05 2E-09 75.3 2.5 60 366-431 123-185 (467)
133 cd05112 PTKc_Itk Catalytic dom 97.4 0.00025 5.5E-09 65.4 5.3 51 376-432 10-60 (256)
134 cd07868 STKc_CDK8 Catalytic do 97.4 0.00028 6.1E-09 67.5 5.7 50 376-432 7-59 (317)
135 cd05071 PTKc_Src Catalytic dom 97.4 0.00026 5.6E-09 65.8 5.3 51 376-432 12-62 (262)
136 cd06646 STKc_MAP4K5 Catalytic 97.4 0.00036 7.8E-09 64.9 6.2 52 376-432 15-67 (267)
137 cd05036 PTKc_ALK_LTK Catalytic 97.3 0.00023 4.9E-09 66.8 4.8 58 370-431 4-69 (277)
138 cd07864 STKc_CDK12 Catalytic d 97.3 0.0004 8.7E-09 65.9 6.5 59 370-431 5-66 (302)
139 cd05063 PTKc_EphR_A2 Catalytic 97.3 0.00034 7.3E-09 65.1 5.8 57 372-432 5-67 (268)
140 cd05035 PTKc_Axl_like Catalyti 97.3 0.0004 8.6E-09 64.7 6.2 53 376-431 5-61 (273)
141 cd05629 STKc_NDR_like_fungal C 97.3 0.00021 4.4E-09 70.5 4.5 55 376-432 7-62 (377)
142 cd07867 STKc_CDC2L6 Catalytic 97.3 0.00031 6.7E-09 67.2 5.5 50 376-432 7-59 (317)
143 cd05107 PTKc_PDGFR_beta Cataly 97.3 0.00032 6.9E-09 69.8 5.7 52 376-431 43-101 (401)
144 cd05600 STKc_Sid2p_Dbf2p Catal 97.3 0.00022 4.8E-09 69.0 4.4 55 376-432 7-62 (333)
145 cd05073 PTKc_Hck Catalytic dom 97.3 0.00022 4.7E-09 66.2 4.2 50 376-431 12-61 (260)
146 cd06631 STKc_YSK4 Catalytic do 97.3 0.0004 8.6E-09 64.5 5.9 56 376-431 6-62 (265)
147 cd05630 STKc_GRK6 Catalytic do 97.3 0.00037 8E-09 65.8 5.8 55 376-432 6-61 (285)
148 cd05039 PTKc_Csk_like Catalyti 97.3 0.00034 7.3E-09 64.7 5.4 50 376-432 12-61 (256)
149 cd06619 PKc_MKK5 Catalytic dom 97.3 0.00046 9.9E-09 64.8 6.3 52 376-431 7-59 (279)
150 cd05075 PTKc_Axl Catalytic dom 97.3 0.00046 9.9E-09 64.3 6.2 54 376-432 5-61 (272)
151 cd05596 STKc_ROCK Catalytic do 97.3 0.00018 3.9E-09 70.8 3.6 61 370-432 41-104 (370)
152 cd05145 RIO1_like RIO kinase f 97.3 0.00048 1E-08 61.0 5.9 30 376-405 3-32 (190)
153 cd06650 PKc_MEK1 Catalytic dom 97.3 0.00059 1.3E-08 66.0 6.9 56 372-431 5-63 (333)
154 cd07859 STKc_TDY_MAPK_plant Ca 97.3 0.00037 8E-09 67.3 5.4 53 376-431 6-59 (338)
155 cd05113 PTKc_Btk_Bmx Catalytic 97.3 0.00033 7.2E-09 64.8 4.9 51 376-432 10-60 (256)
156 cd05109 PTKc_HER2 Catalytic do 97.3 0.00048 1E-08 64.6 6.0 52 376-431 13-69 (279)
157 PTZ00283 serine/threonine prot 97.3 0.00024 5.1E-09 72.8 4.1 57 372-431 32-91 (496)
158 cd06653 STKc_MEKK3_like_1 Cata 97.3 0.0005 1.1E-08 63.9 6.0 56 376-431 8-64 (264)
159 cd05573 STKc_ROCK_NDR_like Cat 97.3 0.00027 5.8E-09 68.8 4.3 54 376-431 7-61 (350)
160 cd06642 STKc_STK25-YSK1 Cataly 97.3 0.0007 1.5E-08 63.4 7.0 52 376-431 10-62 (277)
161 cd05059 PTKc_Tec_like Catalyti 97.3 0.00051 1.1E-08 63.5 5.9 50 376-431 10-59 (256)
162 cd06649 PKc_MEK2 Catalytic dom 97.2 0.00052 1.1E-08 66.4 6.1 53 376-432 11-64 (331)
163 cd07846 STKc_CDKL2_3 Catalytic 97.2 0.00037 8E-09 65.5 5.0 54 376-432 7-61 (286)
164 PRK13184 pknD serine/threonine 97.2 0.00041 8.9E-09 74.7 5.8 55 376-432 8-63 (932)
165 cd05048 PTKc_Ror Catalytic Dom 97.2 0.00062 1.4E-08 63.9 6.5 52 376-431 11-68 (283)
166 cd05061 PTKc_InsR Catalytic do 97.2 0.0004 8.6E-09 65.6 5.2 58 371-432 5-70 (288)
167 cd05079 PTKc_Jak1_rpt2 Catalyt 97.2 0.00047 1E-08 64.9 5.6 53 376-432 10-67 (284)
168 cd07849 STKc_ERK1_2_like Catal 97.2 0.00034 7.4E-09 67.7 4.6 56 372-431 5-63 (336)
169 cd05097 PTKc_DDR_like Catalyti 97.2 0.00045 9.8E-09 65.4 5.4 53 376-432 11-78 (295)
170 cd05062 PTKc_IGF-1R Catalytic 97.2 0.00049 1.1E-08 64.5 5.5 59 370-432 4-70 (277)
171 cd06611 STKc_SLK_like Catalyti 97.2 0.00063 1.4E-08 63.8 6.3 55 372-431 5-62 (280)
172 KOG0662 Cyclin-dependent kinas 97.2 0.00053 1.1E-08 58.4 4.9 54 376-432 8-62 (292)
173 cd05625 STKc_LATS1 Catalytic d 97.2 0.00032 7E-09 69.2 4.4 54 376-431 7-61 (382)
174 cd06607 STKc_TAO Catalytic dom 97.2 0.0008 1.7E-08 64.2 6.9 55 376-432 21-76 (307)
175 PTZ00426 cAMP-dependent protei 97.2 0.00037 8E-09 67.7 4.7 55 376-432 36-92 (340)
176 cd05069 PTKc_Yes Catalytic dom 97.2 0.00051 1.1E-08 63.7 5.4 51 376-432 12-62 (260)
177 cd06609 STKc_MST3_like Catalyt 97.2 0.00074 1.6E-08 63.1 6.5 53 376-432 7-60 (274)
178 cd05080 PTKc_Tyk2_rpt2 Catalyt 97.2 0.00068 1.5E-08 63.7 6.3 53 376-432 10-67 (283)
179 cd06625 STKc_MEKK3_like Cataly 97.2 0.00059 1.3E-08 63.2 5.8 57 376-432 8-65 (263)
180 cd05038 PTKc_Jak_rpt2 Catalyti 97.2 0.00058 1.3E-08 64.0 5.8 52 376-431 10-66 (284)
181 cd07841 STKc_CDK7 Catalytic do 97.2 0.00059 1.3E-08 64.6 5.8 57 376-432 6-63 (298)
182 KOG4257 Focal adhesion tyrosin 97.2 0.00042 9.2E-09 69.6 4.8 54 374-431 393-451 (974)
183 cd06605 PKc_MAPKK Catalytic do 97.2 0.00069 1.5E-08 62.8 6.1 52 376-431 7-59 (265)
184 cd06638 STKc_myosinIIIA Cataly 97.2 0.00019 4.1E-09 67.5 2.3 64 362-431 8-75 (286)
185 cd07870 STKc_PFTAIRE2 Catalyti 97.2 0.00039 8.5E-09 65.6 4.4 57 371-431 4-63 (291)
186 KOG2739 Leucine-rich acidic nu 97.2 0.00017 3.7E-09 65.0 1.8 98 74-175 44-149 (260)
187 KOG0581 Mitogen-activated prot 97.2 0.0012 2.6E-08 62.4 7.3 62 361-431 75-137 (364)
188 cd06622 PKc_MAPKK_PBS2_like Ca 97.2 0.00093 2E-08 62.8 6.9 52 376-431 7-59 (286)
189 cd06616 PKc_MKK4 Catalytic dom 97.2 0.00091 2E-08 63.0 6.8 52 376-431 10-63 (288)
190 KOG2739 Leucine-rich acidic nu 97.2 0.00028 6.1E-09 63.6 3.0 92 89-183 35-130 (260)
191 cd08529 STKc_FA2-like Catalyti 97.2 0.00075 1.6E-08 62.2 6.0 54 376-432 6-60 (256)
192 cd07860 STKc_CDK2_3 Catalytic 97.2 0.00056 1.2E-08 64.2 5.2 54 376-432 6-60 (284)
193 cd05601 STKc_CRIK Catalytic do 97.2 0.00044 9.5E-09 66.8 4.6 55 376-432 7-62 (330)
194 cd07836 STKc_Pho85 Catalytic d 97.1 0.00065 1.4E-08 63.7 5.6 52 376-431 6-58 (284)
195 cd05054 PTKc_VEGFR Catalytic d 97.1 0.00044 9.6E-09 67.1 4.5 52 376-431 13-71 (337)
196 cd06610 STKc_OSR1_SPAK Catalyt 97.1 0.00065 1.4E-08 63.0 5.4 53 376-432 7-60 (267)
197 cd06644 STKc_STK10_LOK Catalyt 97.1 0.00071 1.5E-08 64.0 5.8 51 376-431 18-69 (292)
198 cd05065 PTKc_EphR_B Catalytic 97.1 0.00064 1.4E-08 63.3 5.4 52 376-431 10-65 (269)
199 KOG1909 Ran GTPase-activating 97.1 0.00012 2.7E-09 68.4 0.5 108 74-181 186-310 (382)
200 KOG2123 Uncharacterized conser 97.1 3.4E-05 7.3E-10 70.0 -3.1 97 74-175 20-123 (388)
201 cd05621 STKc_ROCK2 Catalytic d 97.1 0.00045 9.7E-09 68.0 4.4 60 371-432 42-104 (370)
202 cd06641 STKc_MST3 Catalytic do 97.1 0.00085 1.8E-08 62.9 6.1 52 376-431 10-62 (277)
203 cd05045 PTKc_RET Catalytic dom 97.1 0.00079 1.7E-08 63.6 5.9 53 376-432 6-64 (290)
204 cd06615 PKc_MEK Catalytic doma 97.1 0.00083 1.8E-08 64.1 6.1 53 376-432 7-60 (308)
205 cd05622 STKc_ROCK1 Catalytic d 97.1 0.00043 9.4E-09 68.1 4.3 67 364-432 35-104 (371)
206 cd07844 STKc_PCTAIRE_like Cata 97.1 0.00059 1.3E-08 64.4 5.0 53 376-432 11-64 (291)
207 cd07880 STKc_p38gamma_MAPK12 C 97.1 0.00067 1.5E-08 65.9 5.5 59 371-432 14-75 (343)
208 cd06639 STKc_myosinIIIB Cataly 97.1 0.00028 6E-09 66.7 2.6 65 361-431 11-79 (291)
209 cd05066 PTKc_EphR_A Catalytic 97.1 0.00077 1.7E-08 62.8 5.6 52 376-431 10-65 (267)
210 KOG4250 TANK binding protein k 97.1 0.00027 5.8E-09 71.9 2.5 52 376-431 19-71 (732)
211 cd06645 STKc_MAP4K3 Catalytic 97.1 0.0014 2.9E-08 61.0 7.2 52 376-432 15-67 (267)
212 cd05597 STKc_DMPK_like Catalyt 97.1 0.00049 1.1E-08 66.5 4.3 54 376-431 7-61 (331)
213 PTZ00036 glycogen synthase kin 97.1 0.00061 1.3E-08 68.7 5.1 48 376-432 72-120 (440)
214 cd06656 STKc_PAK3 Catalytic do 97.1 0.00092 2E-08 63.5 6.1 52 376-432 25-77 (297)
215 cd07856 STKc_Sty1_Hog1 Catalyt 97.1 0.00046 9.9E-09 66.7 4.0 62 367-431 5-69 (328)
216 cd05628 STKc_NDR1 Catalytic do 97.1 0.0005 1.1E-08 67.4 4.4 54 376-431 7-61 (363)
217 cd05578 STKc_Yank1 Catalytic d 97.1 0.00078 1.7E-08 62.3 5.5 54 376-431 6-60 (258)
218 cd05598 STKc_LATS Catalytic do 97.1 0.00047 1E-08 67.9 4.2 55 376-432 7-62 (376)
219 cd05088 PTKc_Tie2 Catalytic do 97.1 0.00098 2.1E-08 63.5 6.2 53 376-432 13-69 (303)
220 cd07843 STKc_CDC2L1 Catalytic 97.1 0.0012 2.5E-08 62.5 6.6 54 376-432 11-65 (293)
221 cd05083 PTKc_Chk Catalytic dom 97.1 0.00059 1.3E-08 63.0 4.5 49 376-432 12-60 (254)
222 cd05627 STKc_NDR2 Catalytic do 97.1 0.00056 1.2E-08 66.9 4.5 55 376-432 7-62 (360)
223 cd05056 PTKc_FAK Catalytic dom 97.1 0.00085 1.8E-08 62.5 5.6 53 376-432 12-68 (270)
224 PRK15386 type III secretion pr 97.1 0.0016 3.4E-08 63.7 7.4 97 73-182 52-169 (426)
225 cd06636 STKc_MAP4K4_6 Catalyti 97.1 0.00077 1.7E-08 63.2 5.2 65 362-432 6-74 (282)
226 cd05051 PTKc_DDR Catalytic dom 97.1 0.00097 2.1E-08 63.0 5.9 52 376-431 11-79 (296)
227 cd05082 PTKc_Csk Catalytic dom 97.0 0.00091 2E-08 61.8 5.4 48 376-431 12-59 (256)
228 cd05095 PTKc_DDR2 Catalytic do 97.0 0.00085 1.9E-08 63.6 5.3 53 376-432 11-80 (296)
229 cd07847 STKc_CDKL1_4 Catalytic 97.0 0.00093 2E-08 62.7 5.4 54 376-432 7-61 (286)
230 cd07840 STKc_CDK9_like Catalyt 97.0 0.0011 2.4E-08 62.1 5.9 54 376-432 5-59 (287)
231 cd05624 STKc_MRCK_beta Catalyt 97.0 0.00066 1.4E-08 65.6 4.4 55 376-432 7-62 (331)
232 cd06635 STKc_TAO1 Catalytic do 97.0 0.0017 3.6E-08 62.3 7.2 54 376-431 31-85 (317)
233 cd07873 STKc_PCTAIRE1 Catalyti 97.0 0.0012 2.7E-08 62.6 6.2 53 376-432 12-65 (301)
234 KOG1909 Ran GTPase-activating 97.0 0.00031 6.7E-09 65.8 1.8 111 73-183 92-227 (382)
235 cd06657 STKc_PAK4 Catalytic do 97.0 0.0012 2.6E-08 62.6 5.9 51 376-431 26-77 (292)
236 cd06659 STKc_PAK6 Catalytic do 97.0 0.0018 3.8E-08 61.5 7.0 51 376-431 27-78 (297)
237 PF00069 Pkinase: Protein kina 97.0 0.00092 2E-08 61.7 5.0 54 376-432 5-59 (260)
238 cd05052 PTKc_Abl Catalytic dom 97.0 0.00085 1.8E-08 62.3 4.7 50 376-431 12-62 (263)
239 cd07876 STKc_JNK2 Catalytic do 97.0 0.0012 2.6E-08 64.5 6.0 54 376-432 27-81 (359)
240 cd06626 STKc_MEKK4 Catalytic d 97.0 0.0015 3.3E-08 60.4 6.4 53 376-431 6-59 (264)
241 cd05587 STKc_cPKC Catalytic do 97.0 0.00088 1.9E-08 64.5 4.9 54 376-431 6-60 (324)
242 KOG0661 MAPK related serine/th 97.0 0.00047 1E-08 67.1 2.8 53 376-432 16-70 (538)
243 cd07854 STKc_MAPK4_6 Catalytic 97.0 0.0012 2.5E-08 64.2 5.7 51 376-431 11-62 (342)
244 PHA03211 serine/threonine kina 97.0 0.00089 1.9E-08 67.7 4.9 46 376-432 175-221 (461)
245 cd05046 PTK_CCK4 Pseudokinase 97.0 0.00089 1.9E-08 62.5 4.6 53 376-432 11-69 (275)
246 PHA03212 serine/threonine kina 97.0 0.00075 1.6E-08 66.9 4.3 46 376-432 98-144 (391)
247 cd05093 PTKc_TrkB Catalytic do 97.0 0.00085 1.8E-08 63.3 4.5 51 376-431 11-67 (288)
248 TIGR01982 UbiB 2-polyprenylphe 97.0 0.0015 3.4E-08 65.5 6.4 64 356-427 90-166 (437)
249 cd08225 STKc_Nek5 Catalytic do 97.0 0.0011 2.4E-08 61.1 5.1 54 376-432 6-60 (257)
250 cd06647 STKc_PAK_I Catalytic d 96.9 0.0013 2.9E-08 62.2 5.7 52 376-432 25-77 (293)
251 smart00219 TyrKc Tyrosine kina 96.9 0.0012 2.5E-08 60.8 5.2 53 376-432 5-62 (258)
252 cd06621 PKc_MAPKK_Pek1_like Ca 96.9 0.0013 2.8E-08 62.0 5.6 52 376-431 7-59 (287)
253 cd07845 STKc_CDK10 Catalytic d 96.9 0.00097 2.1E-08 63.6 4.7 54 376-432 13-67 (309)
254 cd07835 STKc_CDK1_like Catalyt 96.9 0.0014 3.1E-08 61.4 5.7 53 376-431 5-58 (283)
255 cd08217 STKc_Nek2 Catalytic do 96.9 0.0018 3.8E-08 59.8 6.2 54 376-432 6-60 (265)
256 KOG0198 MEKK and related serin 96.9 0.0014 3.1E-08 62.1 5.6 51 376-431 23-74 (313)
257 cd06630 STKc_MEKK1 Catalytic d 96.9 0.0019 4E-08 60.0 6.4 56 376-431 6-63 (268)
258 cd06643 STKc_SLK Catalytic dom 96.9 0.0014 2.9E-08 61.6 5.5 52 376-432 11-63 (282)
259 cd05055 PTKc_PDGFR Catalytic d 96.9 0.0013 2.9E-08 62.6 5.4 56 372-431 35-99 (302)
260 cd05615 STKc_cPKC_alpha Cataly 96.9 0.00093 2E-08 64.3 4.4 54 376-431 6-60 (323)
261 cd05623 STKc_MRCK_alpha Cataly 96.9 0.00082 1.8E-08 65.0 4.0 54 376-431 7-61 (332)
262 cd05032 PTKc_InsR_like Catalyt 96.9 0.0015 3.3E-08 61.0 5.7 53 376-432 12-70 (277)
263 cd06640 STKc_MST4 Catalytic do 96.9 0.0023 5E-08 59.9 6.9 53 376-432 10-63 (277)
264 cd07832 STKc_CCRK Catalytic do 96.9 0.0019 4.2E-08 60.5 6.4 54 376-432 6-60 (286)
265 cd07874 STKc_JNK3 Catalytic do 96.9 0.0014 3.1E-08 63.9 5.6 58 372-432 17-77 (355)
266 cd06623 PKc_MAPKK_plant_like C 96.9 0.0013 2.9E-08 60.7 5.1 52 376-431 7-59 (264)
267 KOG0032 Ca2+/calmodulin-depend 96.9 0.0018 3.9E-08 63.6 6.2 54 376-431 41-96 (382)
268 cd05092 PTKc_TrkA Catalytic do 96.9 0.0015 3.2E-08 61.3 5.5 51 376-431 11-67 (280)
269 cd06606 STKc_MAPKKK Catalytic 96.9 0.0017 3.7E-08 59.5 5.8 53 376-431 6-59 (260)
270 cd05610 STKc_MASTL Catalytic d 96.9 0.0013 2.9E-08 69.8 5.7 55 376-432 10-65 (669)
271 cd07875 STKc_JNK1 Catalytic do 96.9 0.0015 3.2E-08 64.0 5.6 58 372-432 24-84 (364)
272 cd07837 STKc_CdkB_plant Cataly 96.9 0.0011 2.3E-08 62.7 4.4 52 376-430 7-59 (295)
273 PLN00009 cyclin-dependent kina 96.9 0.0012 2.7E-08 62.3 4.8 53 376-431 8-61 (294)
274 cd07862 STKc_CDK6 Catalytic do 96.9 0.0022 4.7E-08 60.4 6.4 54 376-432 7-65 (290)
275 cd05057 PTKc_EGFR_like Catalyt 96.9 0.0016 3.5E-08 61.0 5.5 52 376-431 13-69 (279)
276 cd05053 PTKc_FGFR Catalytic do 96.9 0.0012 2.5E-08 62.4 4.6 56 372-431 12-76 (293)
277 cd05144 RIO2_C RIO kinase fami 96.9 0.0025 5.5E-08 56.6 6.5 56 376-431 21-93 (198)
278 cd07833 STKc_CDKL Catalytic do 96.9 0.00098 2.1E-08 62.6 4.0 54 376-432 7-61 (288)
279 cd07852 STKc_MAPK15 Catalytic 96.9 0.0023 4.9E-08 62.0 6.6 57 372-431 7-67 (337)
280 cd07861 STKc_CDK1_euk Catalyti 96.9 0.0015 3.2E-08 61.4 5.2 53 376-431 6-59 (285)
281 cd05580 STKc_PKA Catalytic dom 96.9 0.0014 2.9E-08 62.0 4.9 55 376-432 7-62 (290)
282 KOG4278 Protein tyrosine kinas 96.9 0.00079 1.7E-08 67.6 3.3 51 376-432 273-324 (1157)
283 cd06614 STKc_PAK Catalytic dom 96.9 0.002 4.2E-08 60.7 6.0 56 370-431 17-75 (286)
284 cd06917 STKc_NAK1_like Catalyt 96.9 0.0023 5E-08 59.8 6.4 50 376-429 7-57 (277)
285 cd06612 STKc_MST1_2 Catalytic 96.9 0.002 4.2E-08 59.4 5.8 49 376-431 9-58 (256)
286 cd05089 PTKc_Tie1 Catalytic do 96.8 0.0017 3.6E-08 61.6 5.5 52 376-431 8-63 (297)
287 cd05574 STKc_phototropin_like 96.8 0.0019 4.2E-08 61.7 5.8 55 376-432 7-62 (316)
288 cd06633 STKc_TAO3 Catalytic do 96.8 0.0026 5.7E-08 60.9 6.7 54 376-431 27-81 (313)
289 cd06629 STKc_MAPKKK_Bck1_like 96.8 0.0018 4E-08 60.3 5.5 56 376-431 7-68 (272)
290 cd05110 PTKc_HER4 Catalytic do 96.8 0.0019 4.1E-08 61.5 5.6 53 376-432 13-70 (303)
291 cd05094 PTKc_TrkC Catalytic do 96.8 0.0012 2.6E-08 62.4 4.2 52 376-432 11-68 (291)
292 KOG0574 STE20-like serine/thre 96.8 0.00049 1.1E-08 63.2 1.4 47 376-429 39-86 (502)
293 PTZ00024 cyclin-dependent prot 96.8 0.0021 4.5E-08 62.1 5.8 57 376-432 15-81 (335)
294 cd07865 STKc_CDK9 Catalytic do 96.8 0.0019 4.1E-08 61.4 5.5 54 376-432 18-72 (310)
295 cd05111 PTK_HER3 Pseudokinase 96.8 0.0025 5.4E-08 59.8 6.2 52 376-431 13-69 (279)
296 cd06634 STKc_TAO2 Catalytic do 96.8 0.0036 7.8E-08 59.7 7.3 54 376-431 21-75 (308)
297 PLN03225 Serine/threonine-prot 96.8 0.0011 2.4E-08 68.8 4.0 35 370-404 130-171 (566)
298 cd08218 STKc_Nek1 Catalytic do 96.8 0.0024 5.1E-08 58.9 5.9 54 376-432 6-60 (256)
299 KOG0611 Predicted serine/threo 96.8 0.0012 2.5E-08 63.2 3.7 54 376-431 59-113 (668)
300 cd07866 STKc_BUR1 Catalytic do 96.8 0.0017 3.6E-08 61.8 4.9 58 372-432 8-68 (311)
301 cd08227 PK_STRAD_alpha Pseudok 96.8 0.0026 5.6E-08 61.3 6.2 53 376-431 4-59 (327)
302 cd07855 STKc_ERK5 Catalytic do 96.8 0.002 4.4E-08 62.3 5.3 58 372-432 5-65 (334)
303 cd06654 STKc_PAK1 Catalytic do 96.8 0.0027 5.9E-08 60.2 6.1 52 376-432 26-78 (296)
304 cd06655 STKc_PAK2 Catalytic do 96.7 0.0025 5.4E-08 60.5 5.8 52 376-432 25-77 (296)
305 cd05581 STKc_PDK1 Catalytic do 96.7 0.0021 4.6E-08 59.9 5.3 54 376-431 7-62 (280)
306 cd06608 STKc_myosinIII_like Ca 96.7 0.0015 3.4E-08 60.6 4.2 57 370-432 4-64 (275)
307 cd05616 STKc_cPKC_beta Catalyt 96.7 0.002 4.2E-08 62.0 5.0 53 376-430 6-59 (323)
308 cd07839 STKc_CDK5 Catalytic do 96.7 0.0019 4E-08 60.7 4.8 54 376-432 6-60 (284)
309 KOG1006 Mitogen-activated prot 96.7 0.0015 3.2E-08 59.2 3.7 60 359-427 58-118 (361)
310 KOG1989 ARK protein kinase fam 96.7 0.0022 4.8E-08 66.8 5.5 51 376-431 43-95 (738)
311 KOG0598 Ribosomal protein S6 k 96.7 0.0011 2.4E-08 62.6 3.0 58 372-431 25-85 (357)
312 cd05101 PTKc_FGFR2 Catalytic d 96.7 0.0024 5.2E-08 60.7 5.4 53 376-432 21-82 (304)
313 cd08528 STKc_Nek10 Catalytic d 96.7 0.0038 8.2E-08 58.0 6.6 57 376-432 6-70 (269)
314 cd06617 PKc_MKK3_6 Catalytic d 96.7 0.0024 5.2E-08 59.8 5.3 52 376-431 7-60 (283)
315 smart00090 RIO RIO-like kinase 96.7 0.003 6.4E-08 58.0 5.7 55 376-430 34-109 (237)
316 cd08220 STKc_Nek8 Catalytic do 96.7 0.0035 7.5E-08 57.7 6.2 53 376-431 6-59 (256)
317 cd07842 STKc_CDK8_like Catalyt 96.7 0.0024 5.2E-08 60.9 5.1 55 376-432 6-63 (316)
318 cd05119 RIO RIO kinase family, 96.7 0.0034 7.5E-08 55.0 5.8 30 376-405 3-32 (187)
319 cd05098 PTKc_FGFR1 Catalytic d 96.7 0.003 6.4E-08 60.2 5.7 52 376-431 24-84 (307)
320 cd06658 STKc_PAK5 Catalytic do 96.7 0.0031 6.6E-08 59.7 5.7 51 376-431 28-79 (292)
321 cd05614 STKc_MSK2_N N-terminal 96.7 0.0019 4.1E-08 62.3 4.3 55 376-431 6-65 (332)
322 cd07850 STKc_JNK Catalytic dom 96.7 0.003 6.4E-08 61.6 5.7 58 372-432 16-76 (353)
323 KOG3665 ZYG-1-like serine/thre 96.7 0.0013 2.8E-08 69.4 3.3 111 72-184 147-265 (699)
324 cd08223 STKc_Nek4 Catalytic do 96.6 0.0039 8.4E-08 57.4 6.2 54 376-432 6-60 (257)
325 cd05609 STKc_MAST Catalytic do 96.6 0.0026 5.6E-08 60.6 5.1 55 376-432 7-62 (305)
326 cd06628 STKc_MAPKKK_Byr2_like 96.6 0.0042 9.1E-08 57.6 6.3 56 376-431 6-66 (267)
327 cd08221 STKc_Nek9 Catalytic do 96.6 0.0045 9.7E-08 57.0 6.4 53 376-431 6-59 (256)
328 cd07858 STKc_TEY_MAPK_plant Ca 96.6 0.0025 5.3E-08 61.7 4.8 53 376-431 11-64 (337)
329 cd07851 STKc_p38 Catalytic dom 96.6 0.0028 6E-08 61.6 5.1 59 371-432 14-75 (343)
330 cd08215 STKc_Nek Catalytic dom 96.6 0.0043 9.3E-08 56.9 6.1 54 376-432 6-60 (258)
331 PRK15386 type III secretion pr 96.6 0.0045 9.7E-08 60.6 6.4 97 72-180 71-188 (426)
332 KOG4721 Serine/threonine prote 96.6 0.0017 3.8E-08 64.6 3.5 56 358-431 117-172 (904)
333 KOG0660 Mitogen-activated prot 96.6 0.0024 5.1E-08 60.2 4.2 53 376-431 28-81 (359)
334 PF03109 ABC1: ABC1 family; I 96.5 0.0016 3.5E-08 52.7 2.6 48 372-427 12-60 (119)
335 KOG2982 Uncharacterized conser 96.5 0.00061 1.3E-08 62.6 0.1 87 95-181 69-158 (418)
336 KOG0582 Ste20-like serine/thre 96.5 0.0029 6.2E-08 61.3 4.6 53 376-432 32-85 (516)
337 cd06618 PKc_MKK7 Catalytic dom 96.5 0.004 8.7E-08 58.9 5.6 52 376-431 21-74 (296)
338 cd05613 STKc_MSK1_N N-terminal 96.5 0.0034 7.4E-08 59.2 4.9 53 376-429 6-62 (290)
339 cd06627 STKc_Cdc7_like Catalyt 96.5 0.0057 1.2E-07 56.0 6.3 54 376-432 6-60 (254)
340 cd05589 STKc_PKN Catalytic dom 96.5 0.0034 7.4E-08 60.4 4.9 55 376-432 5-63 (324)
341 cd07834 STKc_MAPK Catalytic do 96.5 0.0047 1E-07 59.4 5.8 54 376-432 6-60 (330)
342 cd07829 STKc_CDK_like Catalyti 96.5 0.0048 1E-07 57.6 5.7 54 376-432 5-59 (282)
343 cd08219 STKc_Nek3 Catalytic do 96.5 0.0043 9.4E-08 57.1 5.3 53 376-432 6-59 (255)
344 cd08226 PK_STRAD_beta Pseudoki 96.4 0.0077 1.7E-07 58.0 7.0 54 376-432 4-60 (328)
345 cd06648 STKc_PAK_II Catalytic 96.4 0.0055 1.2E-07 57.7 5.6 51 376-431 25-76 (285)
346 cd07863 STKc_CDK4 Catalytic do 96.4 0.0063 1.4E-07 57.2 6.1 53 376-431 6-62 (288)
347 KOG3665 ZYG-1-like serine/thre 96.4 0.0015 3.2E-08 68.9 1.8 108 73-182 122-233 (699)
348 PTZ00266 NIMA-related protein 96.4 0.0034 7.3E-08 68.2 4.5 58 372-432 13-73 (1021)
349 cd05118 STKc_CMGC Catalytic do 96.4 0.0068 1.5E-07 56.6 6.0 54 376-432 5-59 (283)
350 cd07838 STKc_CDK4_6_like Catal 96.4 0.0061 1.3E-07 57.1 5.7 54 376-432 5-62 (287)
351 cd06613 STKc_MAP4K3_like Catal 96.3 0.006 1.3E-07 56.3 5.5 51 376-431 9-60 (262)
352 cd05583 STKc_MSK_N N-terminal 96.3 0.0044 9.5E-08 58.3 4.6 55 376-431 6-65 (288)
353 KOG0605 NDR and related serine 96.3 0.0039 8.5E-08 61.7 4.2 60 371-432 140-202 (550)
354 cd08530 STKc_CNK2-like Catalyt 96.3 0.0073 1.6E-07 55.5 5.9 54 376-432 6-60 (256)
355 cd05099 PTKc_FGFR4 Catalytic d 96.3 0.0065 1.4E-07 58.1 5.7 52 376-431 18-78 (314)
356 KOG2982 Uncharacterized conser 96.3 0.00096 2.1E-08 61.3 -0.2 86 73-158 71-159 (418)
357 cd05100 PTKc_FGFR3 Catalytic d 96.3 0.0071 1.5E-07 58.4 5.6 52 376-431 18-78 (334)
358 PHA03209 serine/threonine kina 96.3 0.0037 8E-08 61.1 3.6 50 372-432 66-118 (357)
359 cd07857 STKc_MPK1 Catalytic do 96.2 0.0071 1.5E-07 58.4 5.4 53 376-431 6-62 (332)
360 KOG1024 Receptor-like protein 96.2 0.004 8.7E-08 59.4 3.4 53 376-432 290-348 (563)
361 cd08222 STKc_Nek11 Catalytic d 96.2 0.009 2E-07 55.2 5.7 57 376-432 6-63 (260)
362 KOG0473 Leucine-rich repeat pr 96.2 0.00016 3.4E-09 64.1 -5.8 81 74-157 43-123 (326)
363 PHA03207 serine/threonine kina 96.2 0.0056 1.2E-07 60.7 4.4 47 376-432 98-147 (392)
364 KOG0473 Leucine-rich repeat pr 96.1 0.00011 2.4E-09 65.0 -6.8 90 92-184 37-126 (326)
365 KOG0667 Dual-specificity tyros 96.1 0.0057 1.2E-07 61.9 4.2 48 376-429 192-240 (586)
366 KOG2123 Uncharacterized conser 96.0 0.00055 1.2E-08 62.3 -3.0 79 70-151 37-123 (388)
367 PF00560 LRR_1: Leucine Rich R 96.0 0.003 6.5E-08 34.4 1.0 18 99-117 2-19 (22)
368 PF00560 LRR_1: Leucine Rich R 96.0 0.0025 5.5E-08 34.7 0.6 20 122-142 1-20 (22)
369 KOG0583 Serine/threonine prote 96.0 0.01 2.2E-07 58.1 5.2 56 376-431 23-80 (370)
370 PTZ00267 NIMA-related protein 95.9 0.0088 1.9E-07 61.0 4.6 52 376-432 73-126 (478)
371 PRK04750 ubiB putative ubiquin 95.8 0.021 4.5E-07 58.5 6.8 29 376-404 125-154 (537)
372 COG5238 RNA1 Ran GTPase-activa 95.7 0.0089 1.9E-07 54.5 3.3 110 73-182 30-170 (388)
373 KOG0694 Serine/threonine prote 95.7 0.018 3.9E-07 58.8 5.5 58 372-431 368-429 (694)
374 PRK10359 lipopolysaccharide co 95.6 0.021 4.4E-07 51.9 5.4 67 362-431 19-95 (232)
375 KOG0579 Ste20-like serine/thre 95.6 0.0025 5.4E-08 64.3 -0.8 51 376-431 38-89 (1187)
376 COG5238 RNA1 Ran GTPase-activa 95.5 0.027 5.8E-07 51.5 5.5 109 73-182 92-227 (388)
377 PHA02882 putative serine/threo 95.3 0.027 5.9E-07 53.3 5.4 26 376-401 18-47 (294)
378 PHA03210 serine/threonine kina 95.3 0.0049 1.1E-07 63.2 0.2 61 372-432 148-224 (501)
379 PRK09605 bifunctional UGMP fam 95.3 0.025 5.3E-07 58.6 5.3 55 376-431 339-396 (535)
380 KOG0200 Fibroblast/platelet-de 95.2 0.019 4.2E-07 60.2 4.3 51 375-429 301-359 (609)
381 KOG0585 Ca2+/calmodulin-depend 95.2 0.032 7E-07 54.7 5.4 56 376-431 103-168 (576)
382 cd08216 PK_STRAD Pseudokinase 95.2 0.042 9E-07 52.3 6.3 53 376-432 8-60 (314)
383 KOG2120 SCF ubiquitin ligase, 95.1 0.0042 9E-08 57.3 -0.8 38 143-180 311-349 (419)
384 KOG0596 Dual specificity; seri 95.0 0.016 3.5E-07 57.8 2.8 52 376-430 367-418 (677)
385 KOG0578 p21-activated serine/t 94.9 0.045 9.8E-07 54.7 5.6 51 376-431 279-330 (550)
386 KOG0666 Cyclin C-dependent kin 94.8 0.018 4E-07 53.5 2.3 54 376-432 30-88 (438)
387 PF13306 LRR_5: Leucine rich r 94.8 0.086 1.9E-06 42.9 6.2 99 74-178 13-112 (129)
388 KOG0607 MAP kinase-interacting 94.7 0.056 1.2E-06 50.6 5.3 59 363-429 74-133 (463)
389 KOG1167 Serine/threonine prote 94.6 0.023 5.1E-07 54.7 2.6 49 376-431 42-94 (418)
390 cd05120 APH_ChoK_like Aminogly 94.5 0.056 1.2E-06 44.7 4.6 48 376-431 4-51 (155)
391 KOG0610 Putative serine/threon 94.4 0.084 1.8E-06 51.0 5.8 54 376-431 83-137 (459)
392 KOG2120 SCF ubiquitin ligase, 94.3 0.0029 6.2E-08 58.3 -4.1 84 74-157 186-272 (419)
393 KOG0589 Serine/threonine prote 94.2 0.054 1.2E-06 53.3 4.3 52 376-431 10-63 (426)
394 KOG2345 Serine/threonine prote 93.9 0.05 1.1E-06 49.1 3.0 51 376-431 27-78 (302)
395 KOG1027 Serine/threonine prote 93.8 0.032 6.9E-07 58.3 1.9 43 376-427 515-558 (903)
396 PF08693 SKG6: Transmembrane a 93.8 0.062 1.3E-06 33.7 2.5 12 325-336 28-39 (40)
397 PF14575 EphA2_TM: Ephrin type 93.8 0.023 5E-07 41.7 0.6 22 357-378 52-73 (75)
398 KOG0664 Nemo-like MAPK-related 93.8 0.037 8E-07 50.5 2.0 53 376-431 59-112 (449)
399 KOG4279 Serine/threonine prote 93.7 0.057 1.2E-06 55.6 3.4 52 376-432 581-633 (1226)
400 PF13504 LRR_7: Leucine rich r 93.6 0.036 7.7E-07 28.0 1.0 7 101-107 5-11 (17)
401 PF04478 Mid2: Mid2 like cell 93.5 0.091 2E-06 43.5 3.7 10 328-337 70-79 (154)
402 KOG0586 Serine/threonine prote 93.5 0.13 2.8E-06 52.0 5.5 54 376-432 62-116 (596)
403 COG0661 AarF Predicted unusual 93.2 0.11 2.3E-06 53.1 4.5 63 356-426 98-173 (517)
404 cd07831 STKc_MOK Catalytic dom 93.0 0.19 4.1E-06 46.8 5.7 29 376-404 5-34 (282)
405 cd07830 STKc_MAK_like Catalyti 92.8 0.16 3.5E-06 47.4 4.9 29 376-404 5-34 (283)
406 COG2112 Predicted Ser/Thr prot 92.7 0.26 5.6E-06 42.6 5.4 45 376-428 28-72 (201)
407 PF02439 Adeno_E3_CR2: Adenovi 92.6 0.12 2.6E-06 31.8 2.3 28 310-337 6-33 (38)
408 PF13306 LRR_5: Leucine rich r 92.3 0.26 5.7E-06 40.0 5.0 95 73-172 35-129 (129)
409 KOG1163 Casein kinase (serine/ 92.2 0.2 4.3E-06 45.2 4.2 28 376-403 21-49 (341)
410 KOG1164 Casein kinase (serine/ 92.0 0.22 4.7E-06 47.9 4.8 49 376-429 24-74 (322)
411 KOG0984 Mitogen-activated prot 91.4 0.24 5.3E-06 43.6 3.9 47 376-426 52-99 (282)
412 KOG0986 G protein-coupled rece 91.4 0.032 7E-07 54.4 -1.6 56 373-430 186-244 (591)
413 KOG0669 Cyclin T-dependent kin 91.3 0.016 3.5E-07 52.3 -3.5 52 376-431 23-76 (376)
414 smart00370 LRR Leucine-rich re 91.0 0.18 3.9E-06 28.4 1.9 13 122-134 3-15 (26)
415 smart00369 LRR_TYP Leucine-ric 91.0 0.18 3.9E-06 28.4 1.9 13 122-134 3-15 (26)
416 KOG0668 Casein kinase II, alph 90.7 0.2 4.2E-06 44.9 2.6 46 376-429 44-90 (338)
417 KOG1166 Mitotic checkpoint ser 90.5 0.2 4.4E-06 54.4 3.1 31 376-406 704-734 (974)
418 KOG0616 cAMP-dependent protein 90.4 0.26 5.6E-06 45.8 3.3 54 376-431 50-104 (355)
419 KOG0584 Serine/threonine prote 90.4 0.081 1.7E-06 53.7 0.0 56 374-432 44-102 (632)
420 PRK01723 3-deoxy-D-manno-octul 90.4 0.48 1E-05 43.5 5.1 55 376-431 37-100 (239)
421 PF01102 Glycophorin_A: Glycop 90.3 0.15 3.2E-06 41.0 1.4 26 312-337 69-94 (122)
422 smart00370 LRR Leucine-rich re 90.1 0.3 6.5E-06 27.5 2.3 20 144-164 1-20 (26)
423 smart00369 LRR_TYP Leucine-ric 90.1 0.3 6.5E-06 27.5 2.3 20 144-164 1-20 (26)
424 KOG4258 Insulin/growth factor 89.7 0.33 7.2E-06 51.0 3.7 29 362-391 985-1015(1025)
425 PRK12274 serine/threonine prot 89.6 0.56 1.2E-05 42.0 4.6 53 376-430 8-60 (218)
426 KOG0592 3-phosphoinositide-dep 89.5 0.17 3.6E-06 50.7 1.4 54 375-430 78-133 (604)
427 PHA03390 pk1 serine/threonine- 89.3 1 2.2E-05 41.8 6.5 39 366-404 8-51 (267)
428 KOG0587 Traf2- and Nck-interac 88.9 0.32 6.9E-06 51.5 2.9 61 363-429 10-73 (953)
429 KOG1235 Predicted unusual prot 88.6 1.1 2.4E-05 45.8 6.6 49 356-404 134-195 (538)
430 KOG1151 Tousled-like protein k 88.6 0.16 3.4E-06 49.7 0.5 53 376-430 469-526 (775)
431 KOG4717 Serine/threonine prote 87.9 0.52 1.1E-05 47.1 3.5 54 376-432 24-78 (864)
432 KOG0690 Serine/threonine prote 87.8 0.6 1.3E-05 44.0 3.7 58 372-431 168-228 (516)
433 smart00221 STYKc Protein kinas 87.2 0.6 1.3E-05 41.4 3.4 31 376-406 5-36 (225)
434 KOG0983 Mitogen-activated prot 87.1 1.7 3.7E-05 40.1 6.1 58 361-427 88-146 (391)
435 KOG0033 Ca2+/calmodulin-depend 87.1 0.037 8E-07 49.8 -4.4 53 376-431 17-70 (355)
436 cd05122 PKc_STE Catalytic doma 87.0 0.65 1.4E-05 42.0 3.6 31 376-406 6-37 (253)
437 KOG1165 Casein kinase (serine/ 86.5 0.43 9.2E-06 45.2 2.0 26 376-401 34-60 (449)
438 PF04478 Mid2: Mid2 like cell 85.1 1.1 2.4E-05 37.3 3.5 36 309-344 48-83 (154)
439 KOG1152 Signal transduction se 84.2 0.65 1.4E-05 47.1 2.2 54 376-429 567-624 (772)
440 KOG0588 Serine/threonine prote 83.6 0.97 2.1E-05 46.6 3.2 54 376-431 18-72 (786)
441 PF15102 TMEM154: TMEM154 prot 82.5 1.6 3.5E-05 36.0 3.5 6 363-368 126-131 (146)
442 PF01034 Syndecan: Syndecan do 81.7 0.46 1E-05 33.1 0.1 16 322-337 24-39 (64)
443 KOG0612 Rho-associated, coiled 81.7 0.96 2.1E-05 49.5 2.4 60 366-427 69-131 (1317)
444 KOG4645 MAPKKK (MAP kinase kin 81.7 0.74 1.6E-05 51.0 1.6 54 376-432 1241-1295(1509)
445 PF15345 TMEM51: Transmembrane 81.4 7 0.00015 35.0 7.2 27 312-338 61-87 (233)
446 KOG0671 LAMMER dual specificit 81.1 0.72 1.6E-05 44.3 1.1 49 376-430 95-144 (415)
447 PF14531 Kinase-like: Kinase-l 80.8 3 6.5E-05 39.2 5.2 53 376-430 18-71 (288)
448 PF13516 LRR_6: Leucine Rich r 80.7 0.45 9.7E-06 26.2 -0.2 12 146-157 3-14 (24)
449 smart00364 LRR_BAC Leucine-ric 80.5 1 2.2E-05 25.4 1.2 16 122-138 3-18 (26)
450 KOG0696 Serine/threonine prote 80.5 0.47 1E-05 46.1 -0.3 39 366-404 344-384 (683)
451 KOG0576 Mitogen-activated prot 79.7 0.43 9.4E-06 49.1 -0.9 51 376-431 21-72 (829)
452 smart00365 LRR_SD22 Leucine-ri 79.6 1.4 3E-05 25.0 1.5 14 121-134 2-15 (26)
453 KOG1290 Serine/threonine prote 79.6 2.3 5E-05 42.4 4.0 48 376-429 84-132 (590)
454 KOG0670 U4/U6-associated splic 79.3 2 4.4E-05 43.2 3.6 47 377-429 439-486 (752)
455 KOG1924 RhoA GTPase effector D 75.4 18 0.0004 38.2 9.1 10 359-368 710-719 (1102)
456 KOG1345 Serine/threonine kinas 72.9 8.8 0.00019 35.6 5.6 42 376-423 30-72 (378)
457 KOG1033 eIF-2alpha kinase PEK/ 70.8 0.68 1.5E-05 46.3 -2.1 56 372-431 49-107 (516)
458 KOG3864 Uncharacterized conser 70.6 0.71 1.5E-05 40.6 -1.8 34 75-108 103-136 (221)
459 KOG4308 LRR-containing protein 70.3 0.17 3.7E-06 51.2 -6.5 60 75-134 146-217 (478)
460 smart00368 LRR_RI Leucine rich 69.7 3.2 7E-05 23.8 1.4 13 98-110 3-15 (28)
461 KOG1924 RhoA GTPase effector D 68.9 29 0.00064 36.8 8.9 11 147-157 408-418 (1102)
462 PRK10345 hypothetical protein; 68.9 4.2 9.1E-05 36.4 2.8 28 376-405 8-35 (210)
463 PTZ00382 Variant-specific surf 68.6 5.4 0.00012 30.8 2.9 10 311-320 67-76 (96)
464 PF01102 Glycophorin_A: Glycop 68.1 2.8 6.1E-05 33.8 1.3 32 311-342 65-96 (122)
465 KOG1947 Leucine rich repeat pr 67.8 2.3 5.1E-05 42.9 1.0 109 74-182 189-308 (482)
466 PF06697 DUF1191: Protein of u 67.2 5.5 0.00012 36.9 3.1 6 64-69 42-47 (278)
467 PF08374 Protocadherin: Protoc 66.9 8.6 0.00019 34.0 4.1 6 313-318 41-46 (221)
468 PF12273 RCR: Chitin synthesis 66.1 3.8 8.2E-05 33.6 1.7 10 331-340 19-28 (130)
469 PF06679 DUF1180: Protein of u 64.8 71 0.0015 27.3 9.1 6 328-333 116-121 (163)
470 KOG3864 Uncharacterized conser 62.6 1.6 3.4E-05 38.5 -1.2 84 97-180 101-187 (221)
471 KOG4308 LRR-containing protein 61.9 0.27 5.9E-06 49.8 -7.0 108 75-182 89-217 (478)
472 PF02009 Rifin_STEVOR: Rifin/s 61.7 3.2 6.9E-05 39.2 0.5 15 322-336 269-283 (299)
473 PF13095 FTA2: Kinetochore Sim 61.4 13 0.00027 33.1 4.2 53 376-429 43-112 (207)
474 PF08374 Protocadherin: Protoc 61.3 8.7 0.00019 34.0 3.1 28 306-333 37-64 (221)
475 PF15069 FAM163: FAM163 family 60.8 19 0.00041 29.7 4.8 25 309-333 5-29 (143)
476 KOG0599 Phosphorylase kinase g 59.8 13 0.00028 34.6 4.0 53 376-428 23-79 (411)
477 PF12191 stn_TNFRSF12A: Tumour 56.2 6.6 0.00014 31.5 1.4 25 310-334 78-103 (129)
478 PF02480 Herpes_gE: Alphaherpe 55.7 3.8 8.3E-05 41.0 0.0 17 309-325 354-370 (439)
479 KOG0195 Integrin-linked kinase 54.9 2.8 6.1E-05 38.6 -1.0 61 362-431 187-247 (448)
480 cd05584 STKc_p70S6K Catalytic 54.9 13 0.00027 35.5 3.5 40 392-432 22-61 (323)
481 cd05151 ChoK Choline Kinase (C 54.5 24 0.00053 29.6 4.9 27 377-404 5-31 (170)
482 cd05154 ACAD10_11_like Acyl-Co 54.1 26 0.00055 30.9 5.2 29 376-404 4-32 (223)
483 PF05454 DAG1: Dystroglycan (D 53.6 4.3 9.4E-05 38.0 0.0 13 312-324 150-162 (290)
484 KOG3763 mRNA export factor TAP 52.4 7.6 0.00017 39.4 1.5 63 96-161 217-286 (585)
485 PF06365 CD34_antigen: CD34/Po 52.1 42 0.0009 29.7 5.8 15 310-324 101-115 (202)
486 cd05582 STKc_RSK_N N-terminal 51.4 17 0.00037 34.5 3.7 45 385-432 14-59 (318)
487 COG0478 RIO-like serine/threon 51.4 17 0.00038 33.9 3.5 29 374-402 95-123 (304)
488 PF06809 NPDC1: Neural prolife 50.9 53 0.0011 31.0 6.5 19 380-400 298-318 (341)
489 KOG1947 Leucine rich repeat pr 50.7 5.1 0.00011 40.4 -0.0 105 72-176 213-328 (482)
490 PF01299 Lamp: Lysosome-associ 50.4 7.2 0.00016 37.2 0.9 9 328-336 291-299 (306)
491 PF13908 Shisa: Wnt and FGF in 50.2 18 0.00039 31.4 3.3 14 311-324 79-92 (179)
492 KOG3763 mRNA export factor TAP 49.9 8.8 0.00019 39.0 1.5 63 72-136 217-285 (585)
493 PF15330 SIT: SHP2-interacting 48.4 17 0.00037 28.6 2.6 15 325-339 15-29 (107)
494 PF12877 DUF3827: Domain of un 48.4 35 0.00076 35.4 5.4 9 395-403 468-476 (684)
495 PF05393 Hum_adeno_E3A: Human 48.2 22 0.00048 26.5 2.9 8 329-336 52-59 (94)
496 TIGR01478 STEVOR variant surfa 47.7 16 0.00036 33.8 2.7 8 329-336 278-285 (295)
497 PHA03265 envelope glycoprotein 47.1 22 0.00049 33.8 3.5 15 325-339 365-379 (402)
498 PF14610 DUF4448: Protein of u 43.9 33 0.00072 30.0 4.1 49 290-338 130-187 (189)
499 PTZ00046 rifin; Provisional 43.0 12 0.00027 35.9 1.3 31 311-341 317-347 (358)
500 PTZ00370 STEVOR; Provisional 41.5 21 0.00046 33.1 2.4 27 313-339 259-285 (296)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=2.2e-25 Score=245.30 Aligned_cols=116 Identities=28% Similarity=0.436 Sum_probs=86.1
Q ss_pred CCEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEc
Q 013931 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (433)
Q Consensus 73 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l 152 (433)
.+++.|+|++|.+.+.+|..+ .+++|++|+|++|++++.+|..+..+++|+.|+|++|++.+.+|..+..+++|++|+|
T Consensus 452 ~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 530 (968)
T PLN00113 452 PSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530 (968)
T ss_pred CCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEEC
Confidence 467777777777777766644 3567777777777777777777777777777777777777777777777777777777
Q ss_pred cCCCCcccCchhhhCCCCCCEEEccCCCCCCCCCccc
Q 013931 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQ 189 (433)
Q Consensus 153 ~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~ 189 (433)
++|.+++.+|..+..+++|+.|++++|+++|.+|..+
T Consensus 531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 567 (968)
T PLN00113 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567 (968)
T ss_pred CCCcccccCChhHhCcccCCEEECCCCcccccCChhH
Confidence 7777777777777777777777777777777777543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=1.5e-20 Score=207.00 Aligned_cols=165 Identities=28% Similarity=0.488 Sum_probs=132.3
Q ss_pred hhccCcHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCccceeeC-CCCEEEEEecCCCCcccCcccccCCCCCcE
Q 013931 23 CLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECS-DGKVVNLNLKDLCLEGTLAPEIQSLTHIKS 101 (433)
Q Consensus 23 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~W~~~~~~~~~C~w~gv~C~-~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~ 101 (433)
..+...+.|+.+|++||+.+. +|...+.+|. ...++|.|.||.|+ .++|+.|+|++|.+.+.++..+..+++|++
T Consensus 22 ~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~w~---~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~ 97 (968)
T PLN00113 22 NFSMLHAEELELLLSFKSSIN-DPLKYLSNWN---SSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQT 97 (968)
T ss_pred HccCCCHHHHHHHHHHHHhCC-CCcccCCCCC---CCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCE
Confidence 334456789999999999995 6777788997 56789999999998 678999999999999888888888888888
Q ss_pred EEeeCCcccccCccccC-CCCcCceeecccc----------------------cCCCCCchhccCCCCCcEEEccCCCCc
Q 013931 102 IILRNNSFSGIIPEGFG-ELEELEVLDFGHN----------------------NFSGPLPNDLGINHSLTILLLDNNDFV 158 (433)
Q Consensus 102 L~L~~N~l~~~~p~~~~-~l~~L~~L~ls~N----------------------~l~~~~p~~~~~l~~L~~L~l~~N~l~ 158 (433)
|+|++|++++.+|..+. .+++|++|+|++| .+.+.+|..++.+++|++|+|++|.+.
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence 88888888877776544 5555555555554 555566777788888888888888888
Q ss_pred ccCchhhhCCCCCCEEEccCCCCCCCCCccccc
Q 013931 159 GSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSC 191 (433)
Q Consensus 159 ~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~ 191 (433)
+.+|..+.++++|++|++++|.+++.+|..+..
T Consensus 178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 210 (968)
T PLN00113 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ 210 (968)
T ss_pred ccCChhhhhCcCCCeeeccCCCCcCcCChHHcC
Confidence 888888888888888888888888888875543
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.84 E-value=3e-20 Score=192.94 Aligned_cols=149 Identities=32% Similarity=0.523 Sum_probs=120.1
Q ss_pred ccCcHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCC-----CccceeeC-C-----CCEEEEEecCCCCcccCcccc
Q 013931 25 CWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPC-----SWFGVECS-D-----GKVVNLNLKDLCLEGTLAPEI 93 (433)
Q Consensus 25 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~W~~~~~~~~~C-----~w~gv~C~-~-----~~l~~L~L~~n~l~~~~p~~l 93 (433)
..+...|..+|+++|..+. ++. ..+|. ++|| .|.||.|. . ..|+.|+|++|.+.|.+|..+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~-~~~--~~~W~-----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i 438 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLG-LPL--RFGWN-----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDI 438 (623)
T ss_pred cccCchHHHHHHHHHHhcC-Ccc--cCCCC-----CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHH
Confidence 3456789999999999885 332 24786 3455 79999995 1 138889999999998999889
Q ss_pred cCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEccCCCCcccCchhhhCC-CCCC
Q 013931 94 QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKL-QVLS 172 (433)
Q Consensus 94 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l-~~L~ 172 (433)
..|++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|+|++|.++|.+|..+..+ .++.
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~ 518 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence 999999999999999988888888889999999999999988888888888888888888888888888877653 3555
Q ss_pred EEEccCCCC
Q 013931 173 ESQVDEGQL 181 (433)
Q Consensus 173 ~L~l~~n~l 181 (433)
.+++.+|..
T Consensus 519 ~l~~~~N~~ 527 (623)
T PLN03150 519 SFNFTDNAG 527 (623)
T ss_pred eEEecCCcc
Confidence 666666643
No 4
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.42 E-value=2.1e-13 Score=132.50 Aligned_cols=70 Identities=36% Similarity=0.489 Sum_probs=62.0
Q ss_pred CCCCCCHHHHHHHHhhhh--hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 358 GVPKLKRSELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 358 ~~~~~~~~el~~at~~f~--~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
....|+|+||.+||++|+ ++||+||||.||||.++||+.||||++.....+ . .++|.+||++|++++|+.
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~----~-~~eF~~Ei~~ls~l~H~N 132 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQ----G-EREFLNEVEILSRLRHPN 132 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCc----c-hhHHHHHHHHHhcCCCcC
Confidence 556799999999999999 899999999999999999999999999754432 1 477999999999999984
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=8.2e-15 Score=121.94 Aligned_cols=114 Identities=22% Similarity=0.389 Sum_probs=86.7
Q ss_pred CCCEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEE
Q 013931 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (433)
Q Consensus 72 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ 151 (433)
..+++.|.|++|.++ .+|+.+..|.+|+.|++.+|+|. .+|..++.|++|+.|+++-|++. .+|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 457788888888888 67777888888888888888887 78888888888888888888887 7888888888888888
Q ss_pred ccCCCCc-ccCchhhhCCCCCCEEEccCCCCCCCCCccc
Q 013931 152 LDNNDFV-GSLSPEIYKLQVLSESQVDEGQLSSAAKKEQ 189 (433)
Q Consensus 152 l~~N~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~ 189 (433)
|.+|++. ..+|..|..+..|+.|++++|.|. .+|+..
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dv 146 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDV 146 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhh
Confidence 8888775 346666666666666666666665 344433
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.36 E-value=3.2e-14 Score=118.46 Aligned_cols=115 Identities=32% Similarity=0.479 Sum_probs=94.6
Q ss_pred CCEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCC-CCCchhccCCCCCcEEE
Q 013931 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS-GPLPNDLGINHSLTILL 151 (433)
Q Consensus 73 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~~~~~l~~L~~L~ 151 (433)
.+++.|++.+|+|+ .+|.+++.|++|+.|+++-|++. .+|..|+.++.|+.|||.+|++. ..+|..|..+..|+.|+
T Consensus 56 ~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 47889999999998 88889999999999999999998 89999999999999999999886 35777777777788888
Q ss_pred ccCCCCcccCchhhhCCCCCCEEEccCCCCCCCCCccccc
Q 013931 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSC 191 (433)
Q Consensus 152 l~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~ 191 (433)
|++|.|. .+|..++++++|+.|.+.+|.+- ++|.+++-
T Consensus 134 l~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~ 171 (264)
T KOG0617|consen 134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD 171 (264)
T ss_pred hcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH
Confidence 8888887 77777888888888888887766 45554443
No 7
>PLN03150 hypothetical protein; Provisional
Probab=99.32 E-value=4.2e-12 Score=132.30 Aligned_cols=93 Identities=27% Similarity=0.440 Sum_probs=89.1
Q ss_pred CCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEccCCCCcccCchhhhCCCCCCEEEcc
Q 013931 98 HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVD 177 (433)
Q Consensus 98 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~ 177 (433)
.++.|+|++|.+.|.+|..+..|++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..+.++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccc
Q 013931 178 EGQLSSAAKKEQS 190 (433)
Q Consensus 178 ~n~l~~~~p~~~~ 190 (433)
+|+++|.+|..+.
T Consensus 499 ~N~l~g~iP~~l~ 511 (623)
T PLN03150 499 GNSLSGRVPAALG 511 (623)
T ss_pred CCcccccCChHHh
Confidence 9999999997543
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.12 E-value=1.7e-11 Score=114.99 Aligned_cols=108 Identities=29% Similarity=0.381 Sum_probs=85.4
Q ss_pred CCCEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEE
Q 013931 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (433)
Q Consensus 72 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ 151 (433)
..+++.|+|++|-+. .+|.+++.+..|+.||+++|+|. .+|..+..+..|+++-.++|++...-|+.+.+|.+|.+||
T Consensus 434 l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLD 511 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLD 511 (565)
T ss_pred hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceec
Confidence 446677777777766 66777777777777777777776 6777666666677766677777744445589999999999
Q ss_pred ccCCCCcccCchhhhCCCCCCEEEccCCCCC
Q 013931 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (433)
Q Consensus 152 l~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 182 (433)
|.+|.+. .+|..++++.+|++|++.+|.|.
T Consensus 512 L~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 512 LQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9999999 89999999999999999999998
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1e-10 Score=101.10 Aligned_cols=105 Identities=23% Similarity=0.325 Sum_probs=43.4
Q ss_pred CEEEEEecCCCCcccCccccc-CCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhc-cCCCCCcEEE
Q 013931 74 KVVNLNLKDLCLEGTLAPEIQ-SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDL-GINHSLTILL 151 (433)
Q Consensus 74 ~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~-~~l~~L~~L~ 151 (433)
++++|+|++|.|+ .+. .++ .+.+|+.|+|++|.|+ .++ .+..+++|++|++++|+|+ .+.+.+ ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 5799999999998 343 465 5889999999999998 454 5888999999999999999 565555 4689999999
Q ss_pred ccCCCCcccC-chhhhCCCCCCEEEccCCCCCC
Q 013931 152 LDNNDFVGSL-SPEIYKLQVLSESQVDEGQLSS 183 (433)
Q Consensus 152 l~~N~l~~~~-p~~l~~l~~L~~L~l~~n~l~~ 183 (433)
+++|+|...- -..+..+++|+.|++.+|.++.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 9999997321 1357789999999999999874
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.06 E-value=1.2e-11 Score=120.90 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=66.1
Q ss_pred CEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEcc
Q 013931 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (433)
Q Consensus 74 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~ 153 (433)
++++|+|+.|++...-...+.+|++|+.|+|++|.|...-++.+...++|++|+|++|+|+..-+..|..|..|++|+|+
T Consensus 270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS 349 (873)
T ss_pred ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence 56666666666664444456666666666666666666666666666666666666666663333445555556666666
Q ss_pred CCCCcccCchhhhCCCCCCEEEccCCCCCCCCC
Q 013931 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (433)
Q Consensus 154 ~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 186 (433)
+|.+.-.-...|..+.+|+.|||++|.+++.|-
T Consensus 350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence 665553333345555555555555555554443
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.05 E-value=2.1e-11 Score=119.22 Aligned_cols=116 Identities=20% Similarity=0.241 Sum_probs=73.2
Q ss_pred CEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCch---hccCCCCCcEE
Q 013931 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN---DLGINHSLTIL 150 (433)
Q Consensus 74 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~---~~~~l~~L~~L 150 (433)
+|.+|+|++|+|+..-+.+|..|..|++|+|++|.+...-...|..+.+|+.|||++|.+++.+-+ .|..|++|+.|
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 455566666666544444455556666666666665544444556666777777777776654443 35667777777
Q ss_pred EccCCCCcccCc-hhhhCCCCCCEEEccCCCCCCCCCcccc
Q 013931 151 LLDNNDFVGSLS-PEIYKLQVLSESQVDEGQLSSAAKKEQS 190 (433)
Q Consensus 151 ~l~~N~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 190 (433)
+|.+|++. .+| .+|..+.+|++|+|.+|.+...-|+.+.
T Consensus 398 ~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 398 RLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred eecCceee-ecchhhhccCcccceecCCCCcceeecccccc
Confidence 77777777 444 3677778888888888877766555443
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.05 E-value=3.1e-11 Score=118.90 Aligned_cols=106 Identities=24% Similarity=0.361 Sum_probs=73.8
Q ss_pred CEEEEEecCCCCcccCccc-ccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCC-----------------
Q 013931 74 KVVNLNLKDLCLEGTLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG----------------- 135 (433)
Q Consensus 74 ~l~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~----------------- 135 (433)
+...|+||+|+|. .||.. +.+|+-|-.|||++|++. .+|+.+..|.+|++|+|++|.+..
T Consensus 127 n~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred CcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 4566666666666 44443 556666667777777766 566667777777777777764421
Q ss_pred --------CCchhccCCCCCcEEEccCCCCcccCchhhhCCCCCCEEEccCCCCC
Q 013931 136 --------PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (433)
Q Consensus 136 --------~~p~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 182 (433)
.+|.++..+.+|..+|||.|++. .+|+.+.++.+|+.|+|++|+++
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence 26666677777777778888777 77888888888888888888776
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.91 E-value=9e-11 Score=110.14 Aligned_cols=112 Identities=27% Similarity=0.370 Sum_probs=73.6
Q ss_pred EEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhcc-CCCCCcEEEcc
Q 013931 75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLG-INHSLTILLLD 153 (433)
Q Consensus 75 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~-~l~~L~~L~l~ 153 (433)
+.+||.-.|.++ .+|+.++.|.+|..|+|.+|+|. .+| +|.++..|..|+++.|.|. .+|.+.. ++.+|.+|||.
T Consensus 185 L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 185 LKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred HHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecc
Confidence 444555555444 55666666666666666666665 455 5666666666666666666 5665544 67788888888
Q ss_pred CCCCcccCchhhhCCCCCCEEEccCCCCCCCCCcccccc
Q 013931 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCY 192 (433)
Q Consensus 154 ~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~ 192 (433)
.|++. ..|.++..+.+|.+||+++|.+++-.+ +.+.+
T Consensus 261 dNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~-sLgnl 297 (565)
T KOG0472|consen 261 DNKLK-EVPDEICLLRSLERLDLSNNDISSLPY-SLGNL 297 (565)
T ss_pred ccccc-cCchHHHHhhhhhhhcccCCccccCCc-ccccc
Confidence 88887 788888888888888888888875433 44433
No 14
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=98.89 E-value=1.6e-09 Score=109.58 Aligned_cols=73 Identities=16% Similarity=0.278 Sum_probs=60.9
Q ss_pred ccCCCCCCHHHHHHHHhhhh-----------hhhcCCCCcEEEEEEeC----CCCEEEEEEeeecCCCCCchhHHHHHHH
Q 013931 356 VTGVPKLKRSELEAACEDFS-----------NVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRK 420 (433)
Q Consensus 356 ~~~~~~~~~~el~~at~~f~-----------~~iG~G~fG~VYkg~l~----~g~~VAVK~l~~~~~~~~~~~~~~~F~~ 420 (433)
......++|+|-..|...|. ++||.|.||.||+|.|. ....||||.|+. +.+..+.++|+.
T Consensus 604 k~YiDP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~----GytekqrrdFL~ 679 (996)
T KOG0196|consen 604 KTYIDPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKA----GYTEKQRRDFLS 679 (996)
T ss_pred eeecCCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeecc----CccHHHHhhhhh
Confidence 34556789999888888885 68999999999999994 345699999984 455667899999
Q ss_pred HHHHhhhcccCC
Q 013931 421 KVIYQQLLISKC 432 (433)
Q Consensus 421 Ev~~L~~l~H~~ 432 (433)
|..+|+++.|..
T Consensus 680 EAsIMGQFdHPN 691 (996)
T KOG0196|consen 680 EASIMGQFDHPN 691 (996)
T ss_pred hhhhcccCCCCc
Confidence 999999999963
No 15
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=2e-09 Score=76.50 Aligned_cols=57 Identities=35% Similarity=0.538 Sum_probs=22.8
Q ss_pred CcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEccCC
Q 013931 99 IKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 155 (433)
Q Consensus 99 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N 155 (433)
|++|+|++|+++...+..|..+++|++|++++|.+....|..|.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444444222233344444444444444444222233444444444444444
No 16
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=3.1e-09 Score=75.51 Aligned_cols=61 Identities=26% Similarity=0.465 Sum_probs=55.2
Q ss_pred CCEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccC
Q 013931 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133 (433)
Q Consensus 73 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l 133 (433)
++|++|++++|+|....+..|..+++|++|+|++|.++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3689999999999966666799999999999999999977778999999999999999985
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.83 E-value=3.9e-10 Score=111.32 Aligned_cols=106 Identities=28% Similarity=0.367 Sum_probs=66.1
Q ss_pred CEEEEEecCCCCcccCcccccCCCCCcEEEeeCCccc-ccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEc
Q 013931 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFS-GIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (433)
Q Consensus 74 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l 152 (433)
+|++|+||.|+++ .+|+.+.+|+.|+.|++.+|+++ ..||..+++|.+|+.+.+++|.+. ..|+++.++..|+.|.|
T Consensus 269 ~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L 346 (1255)
T KOG0444|consen 269 NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKL 346 (1255)
T ss_pred hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcc
Confidence 3444555555555 55666666666666666666554 235666666666666666666665 56666666666777777
Q ss_pred cCCCCcccCchhhhCCCCCCEEEccCCCCC
Q 013931 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (433)
Q Consensus 153 ~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 182 (433)
+.|.+. .+|+.+.-|+.|+.||+..|.-.
T Consensus 347 ~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 347 DHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ccccee-echhhhhhcCCcceeeccCCcCc
Confidence 777666 66776666677777777666533
No 18
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.82 E-value=5.3e-09 Score=68.36 Aligned_cols=41 Identities=41% Similarity=0.981 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCC-CCCCCCccceeeC
Q 013931 29 NDEGLALLRLRERVVRDPYGALTSWRSCDT-ENNPCSWFGVECS 71 (433)
Q Consensus 29 ~~~~~~L~~~~~~~~~~~~~~~~~W~~~~~-~~~~C~w~gv~C~ 71 (433)
++|+++|++||+++..++...+.+|+ .. ..+||.|.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~--~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWN--PSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT----TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCC--CcCCCCCeeeccEEeC
Confidence 68999999999999877778999998 44 2899999999995
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.82 E-value=7.6e-10 Score=113.81 Aligned_cols=105 Identities=26% Similarity=0.381 Sum_probs=56.4
Q ss_pred CEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCcc-ccCCCCcCceeecccccCCCCCchhccCCCCCcEEEc
Q 013931 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPE-GFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (433)
Q Consensus 74 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l 152 (433)
.|+.|+|.+|.++...-+.|.++++|++|+|++|++. .+|. .+.++..|+.|+||+|+++ .+|+.+..+..|++|..
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 3455555555555444444555555555555555554 3332 3445555555555555555 55555555555555555
Q ss_pred cCCCCcccCchhhhCCCCCCEEEccCCCCC
Q 013931 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (433)
Q Consensus 153 ~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 182 (433)
.+|.+. .+| ++..++.|+.+|++.|+|+
T Consensus 438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred cCCcee-ech-hhhhcCcceEEecccchhh
Confidence 555555 455 4555555555555555554
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.81 E-value=3.8e-09 Score=91.29 Aligned_cols=99 Identities=29% Similarity=0.369 Sum_probs=51.3
Q ss_pred CCEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCcccc-CCCCcCceeecccccCCCCCc--hhccCCCCCcE
Q 013931 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGF-GELEELEVLDFGHNNFSGPLP--NDLGINHSLTI 149 (433)
Q Consensus 73 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p--~~~~~l~~L~~ 149 (433)
.+++.|+|++|.|+ .+. .+..++.|++|++++|.|+ .+.+.+ ..+++|+.|+|++|+|.. +- ..+..+++|+.
T Consensus 42 ~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~-l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 42 DKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISD-LNELEPLSSLPKLRV 117 (175)
T ss_dssp TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---S-CCCCGGGGG-TT--E
T ss_pred cCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCC-hHHhHHHHcCCCcce
Confidence 57999999999998 443 4888999999999999999 565545 468999999999999973 22 45778899999
Q ss_pred EEccCCCCcccCch----hhhCCCCCCEEEc
Q 013931 150 LLLDNNDFVGSLSP----EIYKLQVLSESQV 176 (433)
Q Consensus 150 L~l~~N~l~~~~p~----~l~~l~~L~~L~l 176 (433)
|+|.+|.++. .+. .+..+++|+.||-
T Consensus 118 L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 118 LSLEGNPVCE-KKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TT-GGGG-STTHHHHHHHH-TT-SEETT
T ss_pred eeccCCcccc-hhhHHHHHHHHcChhheeCC
Confidence 9999999984 333 5778999999874
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.79 E-value=7.4e-09 Score=108.71 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=47.7
Q ss_pred CcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEccCCCCcccCchhhhCCCCCCEEEccC
Q 013931 99 IKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDE 178 (433)
Q Consensus 99 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~ 178 (433)
|+.|+|++|.|+ .+|.. .++|+.|++++|+|+ .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++
T Consensus 384 L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 384 LKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 454 (788)
T ss_pred cceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence 444444444444 23322 234555555555555 34432 234666777777776 6777777777888888888
Q ss_pred CCCCCCCCc
Q 013931 179 GQLSSAAKK 187 (433)
Q Consensus 179 n~l~~~~p~ 187 (433)
|+|++.+|.
T Consensus 455 N~Ls~~~~~ 463 (788)
T PRK15387 455 NPLSERTLQ 463 (788)
T ss_pred CCCCchHHH
Confidence 888777664
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.78 E-value=4.8e-10 Score=115.20 Aligned_cols=104 Identities=18% Similarity=0.267 Sum_probs=91.6
Q ss_pred CCEEEEEecCCCCcccCccc-ccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEE
Q 013931 73 GKVVNLNLKDLCLEGTLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (433)
Q Consensus 73 ~~l~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ 151 (433)
.+|+.|+|++|+|. .+|+. +.++..|+.|+|++|+++ .+|..+..+..|++|...+|++. .+| ++..++.|+.+|
T Consensus 383 ~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred cceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 57999999999998 56664 899999999999999999 89999999999999999999999 888 899999999999
Q ss_pred ccCCCCccc-CchhhhCCCCCCEEEccCCCC
Q 013931 152 LDNNDFVGS-LSPEIYKLQVLSESQVDEGQL 181 (433)
Q Consensus 152 l~~N~l~~~-~p~~l~~l~~L~~L~l~~n~l 181 (433)
++.|+++.. +|.. ...++|++||+++|.-
T Consensus 459 lS~N~L~~~~l~~~-~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEA-LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cccchhhhhhhhhh-CCCcccceeeccCCcc
Confidence 999999743 3433 2338999999999973
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.77 E-value=1.2e-09 Score=102.55 Aligned_cols=108 Identities=23% Similarity=0.293 Sum_probs=95.7
Q ss_pred CEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeeccc-ccCCCCCc-hhccCCCCCcEEE
Q 013931 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH-NNFSGPLP-NDLGINHSLTILL 151 (433)
Q Consensus 74 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~-N~l~~~~p-~~~~~l~~L~~L~ 151 (433)
..+.|+|..|+|+...+.+|..+++|+.|||++|.|+..-|+.|.+|.+|..|-+-+ |+|+ .+| ..|++|.+|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 578999999999976677899999999999999999988999999999998776655 9999 566 4699999999999
Q ss_pred ccCCCCcccCchhhhCCCCCCEEEccCCCCC
Q 013931 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (433)
Q Consensus 152 l~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 182 (433)
+.-|++.-.....|..+++|..|.+.+|.+.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence 9999998777788999999999999999875
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.76 E-value=1.1e-07 Score=100.48 Aligned_cols=100 Identities=23% Similarity=0.350 Sum_probs=64.1
Q ss_pred EEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEccC
Q 013931 75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN 154 (433)
Q Consensus 75 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~ 154 (433)
.+.|+|+++.++ .+|..+. ++|+.|+|++|+|+ .+|..+. .+|++|++++|+|+ .+|..+. .+|+.|+|++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 467788877777 4665543 46778888888877 5666543 47777777777777 5665443 3566666666
Q ss_pred CCCcccCchhhhCCCCCCEEEccCCCCCCCCCc
Q 013931 155 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (433)
Q Consensus 155 N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 187 (433)
|.+. .+|..+. .+|+.|++++|+|+ .+|.
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~ 279 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPE 279 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccC-cccc
Confidence 6666 5555443 35666666666665 3443
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.73 E-value=1.9e-09 Score=97.82 Aligned_cols=103 Identities=18% Similarity=0.281 Sum_probs=76.2
Q ss_pred CEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEcc
Q 013931 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (433)
Q Consensus 74 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~ 153 (433)
-+++|||++|.|+ .+.++..-++.++.|++++|.|. .+. .+..|.+|+.||||+|.++ .+-..-..+.++++|.|+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 4678888888887 77777777888888888888887 343 3777888888888888877 444444566777888888
Q ss_pred CCCCcccCchhhhCCCCCCEEEccCCCCC
Q 013931 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (433)
Q Consensus 154 ~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 182 (433)
.|.+. .+ ..+.++-+|..||+.+|++.
T Consensus 361 ~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 361 QNKIE-TL-SGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred hhhHh-hh-hhhHhhhhheeccccccchh
Confidence 88776 22 34667777888888888775
No 26
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=98.68 E-value=2.3e-07 Score=89.29 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=36.6
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhh--ccc
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQL--LIS 430 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~--l~H 430 (433)
.+||+|+||.||||+| +++.||||.+.. +..+.|++|=++-+. ++|
T Consensus 216 eli~~Grfg~V~KaqL-~~~~VAVKifp~--------~~kqs~~~Ek~Iy~lp~m~h 263 (534)
T KOG3653|consen 216 ELIGRGRFGCVWKAQL-DNRLVAVKIFPE--------QEKQSFQNEKNIYSLPGMKH 263 (534)
T ss_pred HHhhcCccceeehhhc-cCceeEEEecCH--------HHHHHHHhHHHHHhccCccc
Confidence 7899999999999999 779999999953 234678888777654 444
No 27
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=6.1e-08 Score=99.53 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=44.7
Q ss_pred hhhhcCCCCcEEEEEEeC------CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 375 SNVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 375 ~~~iG~G~fG~VYkg~l~------~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
.+.||+|+||+||+|++. +.+.||||.|++.. +.+..+||++|+++|++++|.
T Consensus 491 ~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a----~~~~~~dF~REaeLla~l~H~ 549 (774)
T KOG1026|consen 491 KEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKA----ENQARQDFRREAELLAELQHP 549 (774)
T ss_pred hhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccc----cHHHHHHHHHHHHHHHhccCC
Confidence 388999999999999984 45679999997433 244678999999999999997
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=4.3e-09 Score=95.57 Aligned_cols=114 Identities=19% Similarity=0.167 Sum_probs=94.5
Q ss_pred ccceeeC------CCCEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCc
Q 013931 65 WFGVECS------DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP 138 (433)
Q Consensus 65 w~gv~C~------~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 138 (433)
.+-|.|- .+.++.|++++|.|. .+.. +..|.+|+.|||++|.++ .+...-.+|-++++|.|+.|.+. .+
T Consensus 293 ~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L- 367 (490)
T KOG1259|consen 293 GNLITQIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL- 367 (490)
T ss_pred ccchhhhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-
Confidence 4556674 368999999999998 4443 889999999999999998 56666668899999999999987 33
Q ss_pred hhccCCCCCcEEEccCCCCcccCc--hhhhCCCCCCEEEccCCCCCCC
Q 013931 139 NDLGINHSLTILLLDNNDFVGSLS--PEIYKLQVLSESQVDEGQLSSA 184 (433)
Q Consensus 139 ~~~~~l~~L~~L~l~~N~l~~~~p--~~l~~l~~L~~L~l~~n~l~~~ 184 (433)
..++.+.+|..||+++|+|. .+. ..+++++-|++|.+.+|.+.+.
T Consensus 368 SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 368 SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCcccc
Confidence 46788899999999999997 333 3588999999999999999865
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.63 E-value=8e-09 Score=101.25 Aligned_cols=115 Identities=23% Similarity=0.320 Sum_probs=91.4
Q ss_pred EEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEccC
Q 013931 75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN 154 (433)
Q Consensus 75 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~ 154 (433)
|..|-+++|+++ .+|+.++.+..|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|.++..| .|..||++.
T Consensus 145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfSc 220 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSC 220 (722)
T ss_pred ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeeccc
Confidence 677777777777 67777777777778888888777 67777888888888888888887 678877744 489999999
Q ss_pred CCCcccCchhhhCCCCCCEEEccCCCCCCCCCcccccccccc
Q 013931 155 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSI 196 (433)
Q Consensus 155 N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~ 196 (433)
|++. .+|-.|.+|..|++|-|.+|.|... +..-|...+.
T Consensus 221 Nkis-~iPv~fr~m~~Lq~l~LenNPLqSP--PAqIC~kGkV 259 (722)
T KOG0532|consen 221 NKIS-YLPVDFRKMRHLQVLQLENNPLQSP--PAQICEKGKV 259 (722)
T ss_pred Ccee-ecchhhhhhhhheeeeeccCCCCCC--hHHHHhccce
Confidence 9999 8999999999999999999999853 3445655443
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.61 E-value=7.6e-08 Score=101.55 Aligned_cols=102 Identities=21% Similarity=0.327 Sum_probs=83.1
Q ss_pred CCEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEc
Q 013931 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (433)
Q Consensus 73 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l 152 (433)
.+++.|+|++|.|+ .+|..+. .+|++|+|++|+|+ .+|..+. .+|+.|+|++|.+. .+|..+. .+|+.|++
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 47899999999999 6776654 58999999999998 6787654 47999999999998 7887664 57999999
Q ss_pred cCCCCcccCchhhhCCCCCCEEEccCCCCCCCCCc
Q 013931 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (433)
Q Consensus 153 ~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 187 (433)
++|+++ .+|..+. .+|+.|++++|+|++ +|.
T Consensus 270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~ 300 (754)
T PRK15370 270 FHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPA 300 (754)
T ss_pred cCCccC-ccccccC--CCCcEEECCCCcccc-Ccc
Confidence 999998 6787654 589999999999885 453
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.60 E-value=1.1e-07 Score=106.36 Aligned_cols=111 Identities=22% Similarity=0.232 Sum_probs=69.5
Q ss_pred CCEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEc
Q 013931 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (433)
Q Consensus 73 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l 152 (433)
.+|+.|+|++|.+. .++..+..+++|++|+|++|...+.+|. +..+++|++|+|++|.....+|..+..+++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 35666666666665 4555666677777777766554445553 666677777777766555566777777777777777
Q ss_pred cCCCCcccCchhhhCCCCCCEEEccCCCCCCCCC
Q 013931 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (433)
Q Consensus 153 ~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 186 (433)
++|...+.+|..+ ++++|+.|++++|...+.+|
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence 7654444666544 56666666666665444444
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.58 E-value=2.8e-08 Score=95.46 Aligned_cols=113 Identities=25% Similarity=0.348 Sum_probs=79.9
Q ss_pred CCCEEEEEecCCCCcccCcccccCCCC---CcEEEeeCCcccc----cCccccCCC-CcCceeecccccCCCC----Cch
Q 013931 72 DGKVVNLNLKDLCLEGTLAPEIQSLTH---IKSIILRNNSFSG----IIPEGFGEL-EELEVLDFGHNNFSGP----LPN 139 (433)
Q Consensus 72 ~~~l~~L~L~~n~l~~~~p~~l~~l~~---L~~L~L~~N~l~~----~~p~~~~~l-~~L~~L~ls~N~l~~~----~p~ 139 (433)
..+++.|+|++|.+.+..+..+..+.+ |++|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 357888888888887656655555555 8888888888873 233445566 7888888888888742 334
Q ss_pred hccCCCCCcEEEccCCCCccc----CchhhhCCCCCCEEEccCCCCCCC
Q 013931 140 DLGINHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSSA 184 (433)
Q Consensus 140 ~~~~l~~L~~L~l~~N~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~ 184 (433)
.+..+.+|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 208 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE 208 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence 456667888888888888742 334455667888888888887643
No 33
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=98.57 E-value=9.8e-08 Score=94.43 Aligned_cols=61 Identities=26% Similarity=0.398 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHhhhhhhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 361 KLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 361 ~~~~~el~~at~~f~~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
.+.++|++.. ..||+|.||+||||.+ .| .||||+|+. .+.++.+.++|.+||.++.+-||.
T Consensus 388 eIp~~ev~l~-----~rIGsGsFGtV~Rg~w-hG-dVAVK~Lnv---~~pt~~qlqaFKnEVa~lkkTRH~ 448 (678)
T KOG0193|consen 388 EIPPEEVLLG-----ERIGSGSFGTVYRGRW-HG-DVAVKLLNV---DDPTPEQLQAFKNEVAVLKKTRHE 448 (678)
T ss_pred ccCHHHhhcc-----ceeccccccceeeccc-cc-ceEEEEEec---CCCCHHHHHHHHHHHHHHhhcchh
Confidence 3455555554 7899999999999999 55 499999986 444566788999999999999995
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.56 E-value=3.3e-08 Score=94.94 Aligned_cols=110 Identities=17% Similarity=0.154 Sum_probs=57.1
Q ss_pred CEEEEEecCCCCcc------cCcccccCCCCCcEEEeeCCcccccCccccCCCCc---CceeecccccCCC----CCchh
Q 013931 74 KVVNLNLKDLCLEG------TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEE---LEVLDFGHNNFSG----PLPND 140 (433)
Q Consensus 74 ~l~~L~L~~n~l~~------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~---L~~L~ls~N~l~~----~~p~~ 140 (433)
+++.|+++++.+.+ .++..+..+++|++|+|++|.+.+..+..+..+.+ |++|++++|++.+ .+...
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 35566665555541 22334555566666666666665444444444433 6666666666552 12223
Q ss_pred ccCC-CCCcEEEccCCCCccc----CchhhhCCCCCCEEEccCCCCCC
Q 013931 141 LGIN-HSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSS 183 (433)
Q Consensus 141 ~~~l-~~L~~L~l~~N~l~~~----~p~~l~~l~~L~~L~l~~n~l~~ 183 (433)
+..+ ++|+.|++++|.+++. ++..+..+.+|++|++++|.+++
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 4444 5566666666666532 22334455566666666666653
No 35
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.55 E-value=3.5e-09 Score=85.37 Aligned_cols=106 Identities=22% Similarity=0.240 Sum_probs=86.8
Q ss_pred CCEEEEEecCCCCcccCccc---ccCCCCCcEEEeeCCcccccCccccCC-CCcCceeecccccCCCCCchhccCCCCCc
Q 013931 73 GKVVNLNLKDLCLEGTLAPE---IQSLTHIKSIILRNNSFSGIIPEGFGE-LEELEVLDFGHNNFSGPLPNDLGINHSLT 148 (433)
Q Consensus 73 ~~l~~L~L~~n~l~~~~p~~---l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 148 (433)
..+..++|+++.|- .+++. +....+|+..+|++|.+. .+|+.|.. .+.+++|+|++|.|+ .+|.++..++.|+
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr 103 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR 103 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence 35677888888875 45554 555667777899999998 67776664 458999999999999 8999999999999
Q ss_pred EEEccCCCCcccCchhhhCCCCCCEEEccCCCCC
Q 013931 149 ILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (433)
Q Consensus 149 ~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 182 (433)
.|+++.|.+. ..|..+..|.+|..|+..+|.+.
T Consensus 104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 9999999998 78888888999999998888765
No 36
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.49 E-value=4.2e-07 Score=101.83 Aligned_cols=113 Identities=14% Similarity=0.183 Sum_probs=97.7
Q ss_pred CCEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEc
Q 013931 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (433)
Q Consensus 73 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l 152 (433)
.+++.|++.++.+. .+|..+ .+.+|++|+|++|++. .++..+..+++|+.|+|++|.....+|. +..+++|+.|+|
T Consensus 589 ~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L 664 (1153)
T PLN03210 589 PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL 664 (1153)
T ss_pred cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence 46888888888876 777766 5789999999999998 6888899999999999998876557874 888999999999
Q ss_pred cCCCCcccCchhhhCCCCCCEEEccCCCCCCCCCccc
Q 013931 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQ 189 (433)
Q Consensus 153 ~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~ 189 (433)
++|.....+|..+..+++|+.|++++|...+.+|...
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence 9987777999999999999999999987777888643
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.49 E-value=1.3e-08 Score=99.79 Aligned_cols=111 Identities=27% Similarity=0.347 Sum_probs=94.1
Q ss_pred CCCEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEE
Q 013931 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (433)
Q Consensus 72 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ 151 (433)
...++.|||+.|++. .+|..++.|+ |+.|-+++|+++ .+|+.++.+..|..||.+.|.+. .+|..++.+.+|+.|+
T Consensus 120 L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN 195 (722)
T ss_pred hhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence 346788899999988 7888888776 889999999998 78988998899999999999998 7888899999999999
Q ss_pred ccCCCCcccCchhhhCCCCCCEEEccCCCCCCCCCccc
Q 013931 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQ 189 (433)
Q Consensus 152 l~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~ 189 (433)
+..|++. .+|.++..| .|..||++.|+++ .||-.+
T Consensus 196 vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~f 230 (722)
T KOG0532|consen 196 VRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDF 230 (722)
T ss_pred Hhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhh
Confidence 9999998 788888855 5888999999988 667443
No 38
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.45 E-value=5.8e-08 Score=91.41 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=86.8
Q ss_pred CcccCcc-cccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEccCCCCcccCch
Q 013931 85 LEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSP 163 (433)
Q Consensus 85 l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 163 (433)
..+..|. .|..|++|+.|+|++|+|++.-+..|.++.+|+.|.|..|++...--..|.++..|+.|+|.+|+|+...|.
T Consensus 261 ~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 261 PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence 3445554 499999999999999999988889999999999999999999854445688999999999999999988899
Q ss_pred hhhCCCCCCEEEccCCCCC
Q 013931 164 EIYKLQVLSESQVDEGQLS 182 (433)
Q Consensus 164 ~l~~l~~L~~L~l~~n~l~ 182 (433)
.|..+.+|..|++-.|.+.
T Consensus 341 aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cccccceeeeeehccCccc
Confidence 9999999999999999875
No 39
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.41 E-value=6.8e-07 Score=94.15 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=36.3
Q ss_pred CCEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCC
Q 013931 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134 (433)
Q Consensus 73 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 134 (433)
.+++.|++.+|+|+ .+|. .+++|++|+|++|+|+ .+|.. .++|+.|+|++|.+.
T Consensus 222 ~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 222 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh
Confidence 36788888888887 4554 2577888888888887 46643 245556666665555
No 40
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=98.39 E-value=1.4e-06 Score=89.32 Aligned_cols=52 Identities=23% Similarity=0.386 Sum_probs=43.3
Q ss_pred hhhcCCCCcEEEEEEe-CCCC----EEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGV----EIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~----~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
.+||.|+||+||||.+ |.|. +||||.+..... ++...+|..|+-.|++++|.
T Consensus 702 kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~----~~~s~e~LdeAl~masldHp 758 (1177)
T KOG1025|consen 702 KVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTS----PKASIELLDEALRMASLDHP 758 (1177)
T ss_pred ceeccccceeEEeeeEecCCceecceeEEEEeeccCC----chhhHHHHHHHHHHhcCCCc
Confidence 7899999999999887 6665 489999975444 44478999999999999996
No 41
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=98.39 E-value=1.3e-06 Score=86.25 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=47.1
Q ss_pred hhhhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 374 f~~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
|.++||+|-||.|...+...+..||||+++..... ...++|.+||++|++++|.
T Consensus 542 ~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~----~~r~~F~kEIkiLsqLkhP 595 (807)
T KOG1094|consen 542 FKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATK----NARNDFLKEIKILSRLKHP 595 (807)
T ss_pred hhhhhcCcccceeEEEEecCceEEEEeecCcccch----hHHHHHHHHHHHHhccCCC
Confidence 34899999999999999988899999999865543 3468999999999999997
No 42
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.33 E-value=5.7e-08 Score=78.50 Aligned_cols=110 Identities=15% Similarity=0.250 Sum_probs=90.1
Q ss_pred CCEEEEEecCCCCcccCccccc-CCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEE
Q 013931 73 GKVVNLNLKDLCLEGTLAPEIQ-SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (433)
Q Consensus 73 ~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ 151 (433)
.+++.++|++|.+. .+|..|. .++.++.|+|++|.|+ .+|.++..++.|+.|++++|.|. ..|..+..|.+|-.|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 46889999999998 6666654 4568999999999999 79999999999999999999999 7888888899999999
Q ss_pred ccCCCCcccCchhhhCCCCCCEEEccCCCCCCCCC
Q 013931 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (433)
Q Consensus 152 l~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 186 (433)
..+|.+. .+|..+..-..+-..++.++.+.+.-|
T Consensus 130 s~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 130 SPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred CCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 9999988 777765443444444566677766655
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.31 E-value=3.1e-07 Score=91.16 Aligned_cols=103 Identities=28% Similarity=0.423 Sum_probs=66.2
Q ss_pred CEEEEEecCCCCcccCcccccCCC-CCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEc
Q 013931 74 KVVNLNLKDLCLEGTLAPEIQSLT-HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (433)
Q Consensus 74 ~l~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l 152 (433)
.++.|++.+|.++ .++.....++ +|++|++++|.+. .+|..+..+++|+.|++++|++. .+|...+.++.|+.|++
T Consensus 117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 4666666666666 4555555553 6777777777766 55555666677777777777766 55555556666677777
Q ss_pred cCCCCcccCchhhhCCCCCCEEEccCCC
Q 013931 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQ 180 (433)
Q Consensus 153 ~~N~l~~~~p~~l~~l~~L~~L~l~~n~ 180 (433)
++|++. .+|.....+..|+.|.+++|.
T Consensus 194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 194 SGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred cCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 777666 666655555556666666664
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.26 E-value=4.4e-07 Score=97.42 Aligned_cols=107 Identities=26% Similarity=0.294 Sum_probs=90.6
Q ss_pred CCEEEEEecCCC--CcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEE
Q 013931 73 GKVVNLNLKDLC--LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTIL 150 (433)
Q Consensus 73 ~~l~~L~L~~n~--l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L 150 (433)
+.+++|-+..|. +.......|..|+.|++|||++|.=.+.+|..+++|.+|++|+|++..+. .+|..+++|..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 368888888886 44333444888999999999998877789999999999999999999999 899999999999999
Q ss_pred EccCCCCcccCchhhhCCCCCCEEEccCCC
Q 013931 151 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQ 180 (433)
Q Consensus 151 ~l~~N~l~~~~p~~l~~l~~L~~L~l~~n~ 180 (433)
++..+.....+|..+..|.+|++|.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 999988766777777889999999887655
No 45
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=98.24 E-value=1.9e-06 Score=83.62 Aligned_cols=53 Identities=32% Similarity=0.480 Sum_probs=43.8
Q ss_pred hhhcCCCCcEEEEEEeCCCCE-EEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVE-IAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~-VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||+||+|.+ .|+. ||||++......+ ...++|.+|+.+|.+++|+.
T Consensus 47 ~~iG~G~~g~V~~~~~-~g~~~vavK~~~~~~~~~---~~~~~f~~E~~il~~l~HpN 100 (362)
T KOG0192|consen 47 EVLGSGSFGTVYKGKW-RGTDVVAVKIISDPDFDD---ESRKAFRREASLLSRLRHPN 100 (362)
T ss_pred hhcccCCceeEEEEEe-CCceeEEEEEecchhcCh---HHHHHHHHHHHHHHhCCCCC
Confidence 5699999999999999 6666 9999997544332 22679999999999999984
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.19 E-value=4.3e-07 Score=90.16 Aligned_cols=106 Identities=27% Similarity=0.430 Sum_probs=91.7
Q ss_pred CEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEcc
Q 013931 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (433)
Q Consensus 74 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~ 153 (433)
+++.|++++|.+. .+|..+..+++|+.|++++|++. .+|.....++.|+.|++++|++. .+|..+..+..|++|.++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 7999999999998 67777999999999999999999 78877778999999999999999 888877777789999999
Q ss_pred CCCCcccCchhhhCCCCCCEEEccCCCCCC
Q 013931 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (433)
Q Consensus 154 ~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 183 (433)
+|.+. .++..+.++.++..|.+.+|++..
T Consensus 218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~ 246 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLSGLELSNNKLED 246 (394)
T ss_pred CCcce-ecchhhhhcccccccccCCceeee
Confidence 99655 566677888888888888887764
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.15 E-value=1.3e-07 Score=95.34 Aligned_cols=103 Identities=19% Similarity=0.252 Sum_probs=62.0
Q ss_pred CEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCcc-ccCCCCcCceeecccccCCCCCchhccCCCCCcEEEc
Q 013931 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPE-GFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (433)
Q Consensus 74 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l 152 (433)
.++.|||++|++.. .. .+..|++|+.|||++|.+. .+|. ....+. |+.|.|++|.++ .+ ..+.+|.+|+.||+
T Consensus 188 ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TL-RGIENLKSLYGLDL 261 (1096)
T ss_pred Hhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-hh-hhHHhhhhhhccch
Confidence 56677777777662 22 5666777777777777776 4553 222233 777777777766 22 34666777777777
Q ss_pred cCCCCcccCc-hhhhCCCCCCEEEccCCCCC
Q 013931 153 DNNDFVGSLS-PEIYKLQVLSESQVDEGQLS 182 (433)
Q Consensus 153 ~~N~l~~~~p-~~l~~l~~L~~L~l~~n~l~ 182 (433)
++|-+.+.-. ..+..|..|+.|+|.+|.+.
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7776654211 12445566677777777664
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=1.8e-06 Score=56.46 Aligned_cols=36 Identities=28% Similarity=0.510 Sum_probs=14.7
Q ss_pred CCcEEEeeCCcccccCccccCCCCcCceeecccccCC
Q 013931 98 HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134 (433)
Q Consensus 98 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 134 (433)
+|++|+|++|+|+ .+|..+.+|++|++|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 33333444444444444444443
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.12 E-value=2.7e-06 Score=55.66 Aligned_cols=36 Identities=36% Similarity=0.489 Sum_probs=22.0
Q ss_pred cCceeecccccCCCCCchhccCCCCCcEEEccCCCCc
Q 013931 122 ELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFV 158 (433)
Q Consensus 122 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 158 (433)
+|++|++++|+|+ .+|..+.+|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666666666666 55555666666666666666665
No 50
>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.09 E-value=4.3e-06 Score=79.43 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=43.5
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
..||+|+||+||||+.. +|+.||||++.... ..+....-...||++|.+++|.
T Consensus 16 ~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~---l~~k~~e~L~~Ei~iLkel~H~ 69 (429)
T KOG0595|consen 16 REIGSGSFAVVYKGRHKKSGTEVAIKCIAKKK---LNKKLVELLLSEIKILKELKHP 69 (429)
T ss_pred hhccCcceEEEEEeEeccCCceEEeeeehhhc---cCHHHHHHHHHHHHHHHhcCCc
Confidence 56999999999999994 68999999996432 1244456689999999999997
No 51
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.09 E-value=4.2e-06 Score=80.25 Aligned_cols=47 Identities=28% Similarity=0.467 Sum_probs=38.6
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhh--cccC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQL--LISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~--l~H~ 431 (433)
+.||+|.||.||+|.+ .|+.||||.+.. .+ ++.+.+|.|+-.. +||+
T Consensus 217 e~IGkGRyGEVwrG~w-rGe~VAVKiF~s---rd-----E~SWfrEtEIYqTvmLRHE 265 (513)
T KOG2052|consen 217 EIIGKGRFGEVWRGRW-RGEDVAVKIFSS---RD-----ERSWFRETEIYQTVMLRHE 265 (513)
T ss_pred EEecCccccceeeccc-cCCceEEEEecc---cc-----hhhhhhHHHHHHHHHhccc
Confidence 7899999999999999 899999999963 22 5778888887654 6775
No 52
>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=97.96 E-value=1.4e-05 Score=71.92 Aligned_cols=53 Identities=23% Similarity=0.371 Sum_probs=43.3
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|.||.||||.- ..|+.|||||++.....+ .-...-.+||+.|.+++|+
T Consensus 8 ~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kd---Gi~~talREIK~Lqel~h~ 61 (318)
T KOG0659|consen 8 EKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKD---GINRTALREIKLLQELKHP 61 (318)
T ss_pred hhhcCcceEEEEEEEecCCCcEEEEEEeecccccc---CccHHHHHHHHHHHHccCc
Confidence 5799999999999984 579999999998654332 1246789999999999997
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.95 E-value=2.7e-07 Score=93.15 Aligned_cols=103 Identities=24% Similarity=0.297 Sum_probs=86.7
Q ss_pred CEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchh-ccCCCCCcEEEc
Q 013931 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTILLL 152 (433)
Q Consensus 74 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~l~~L~~L~l 152 (433)
.|...+.++|.+. .+..++.-++.|+.|||++|++.. .. .+..|++|++|||++|.+. .+|.- ...+. |+.|.|
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 5677888899987 677789999999999999999983 44 7899999999999999999 67752 33444 999999
Q ss_pred cCCCCcccCchhhhCCCCCCEEEccCCCCCC
Q 013931 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (433)
Q Consensus 153 ~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 183 (433)
.+|.++ .+ ..+.+|.+|+.||++.|-|.+
T Consensus 240 rnN~l~-tL-~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 240 RNNALT-TL-RGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred cccHHH-hh-hhHHhhhhhhccchhHhhhhc
Confidence 999998 43 357899999999999998875
No 54
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=97.95 E-value=1.1e-05 Score=79.19 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=45.6
Q ss_pred hhhhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 374 FSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 374 f~~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
|.+.||+|-||.||.|.+.+...||||.++... +...+|.+|+++|.+++|.+
T Consensus 210 l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~------m~~~~f~~Ea~iMk~L~H~~ 262 (468)
T KOG0197|consen 210 LIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGS------MSPEAFLREAQIMKKLRHEK 262 (468)
T ss_pred HHHHhcCCccceEEEEEEcCCCcccceEEeccc------cChhHHHHHHHHHHhCcccC
Confidence 348899999999999999767799999997543 23588999999999999986
No 55
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=97.93 E-value=0.00037 Score=68.00 Aligned_cols=53 Identities=23% Similarity=0.179 Sum_probs=43.3
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +|+.||||.+.... ......+|.+|+++|.+++|..
T Consensus 80 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~h~~ 133 (353)
T PLN00034 80 NRIGSGAGGTVYKVIHRPTGRLYALKVIYGNH----EDTVRRQICREIEILRDVNHPN 133 (353)
T ss_pred hhccCCCCeEEEEEEECCCCCEEEEEEEecCC----cHHHHHHHHHHHHHHHhCCCCC
Confidence 78999999999999874 68999999995322 1233578999999999999973
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.90 E-value=1.3e-05 Score=69.36 Aligned_cols=102 Identities=24% Similarity=0.275 Sum_probs=71.9
Q ss_pred CEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCc--hhccCCCCCcEEE
Q 013931 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP--NDLGINHSLTILL 151 (433)
Q Consensus 74 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p--~~~~~l~~L~~L~ 151 (433)
+...+||++|.+. .+ ..|..++.|.+|.|++|.|+..-|.--.-+++|..|.|.+|.|. .+- +.+..++.|++|.
T Consensus 43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence 5577888888876 22 23777888888889999888544443345677888888888886 332 2356778888888
Q ss_pred ccCCCCcccCch----hhhCCCCCCEEEccCC
Q 013931 152 LDNNDFVGSLSP----EIYKLQVLSESQVDEG 179 (433)
Q Consensus 152 l~~N~l~~~~p~----~l~~l~~L~~L~l~~n 179 (433)
+-+|..+ .... .+..+++|++||+.+=
T Consensus 120 ll~Npv~-~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVE-HKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchh-cccCceeEEEEecCcceEeehhhh
Confidence 8888876 2222 4667888888887543
No 57
>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase. Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina
Probab=97.87 E-value=9e-06 Score=75.87 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=48.9
Q ss_pred HHHHHHhhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 366 ELEAACEDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 366 el~~at~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
|++.+|+++. ..||+|+||.||+|... +++.||||.+.... ....++|.+|++++.+++|.
T Consensus 2 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~-----~~~~~~~~~e~~~l~~l~h~ 65 (268)
T cd06624 2 EYEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERD-----SRYVQPLHEEIALHSYLKHR 65 (268)
T ss_pred CcccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCC-----HHHHHHHHHHHHHHHhcCCC
Confidence 4556778876 78999999999999864 67889999986432 22357899999999999997
No 58
>PRK09188 serine/threonine protein kinase; Provisional
Probab=97.87 E-value=2.1e-05 Score=76.51 Aligned_cols=61 Identities=13% Similarity=0.007 Sum_probs=44.6
Q ss_pred hhhh--hhhcCCCCcEEEEEEeC--CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTLS--NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l~--~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
.+|. +.||+|+||+||+|... +|+.||||++.............+.|.+|+++|.+++|..
T Consensus 18 ~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~ 82 (365)
T PRK09188 18 ARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIG 82 (365)
T ss_pred CCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCC
Confidence 4454 78999999999999874 6888999997532110011233567999999999999863
No 59
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.85 E-value=5.5e-06 Score=82.75 Aligned_cols=105 Identities=23% Similarity=0.290 Sum_probs=75.6
Q ss_pred CCCEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEE
Q 013931 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (433)
Q Consensus 72 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ 151 (433)
..+++.|++.+|.|.. +...+..+++|++|+|++|.|+... .+..++.|+.|++++|.+. .+ ..+..+..|+.++
T Consensus 94 ~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLD 168 (414)
T ss_pred ccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hc-cCCccchhhhccc
Confidence 3568888888888873 3333677888888888888887432 3666777888888888887 33 3455678888888
Q ss_pred ccCCCCcccCchh-hhCCCCCCEEEccCCCCC
Q 013931 152 LDNNDFVGSLSPE-IYKLQVLSESQVDEGQLS 182 (433)
Q Consensus 152 l~~N~l~~~~p~~-l~~l~~L~~L~l~~n~l~ 182 (433)
+++|.+. .+... +..+.+|+.+++.+|.+.
T Consensus 169 l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 169 LSYNRIV-DIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred CCcchhh-hhhhhhhhhccchHHHhccCCchh
Confidence 8888887 33332 467778888888888776
No 60
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.81 E-value=1.8e-05 Score=85.27 Aligned_cols=111 Identities=23% Similarity=0.253 Sum_probs=91.5
Q ss_pred CEEEEEecCCCCcccCcccccCCCCCcEEEeeCCc--ccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEE
Q 013931 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNS--FSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (433)
Q Consensus 74 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~--l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ 151 (433)
.++.+.+-+|.+. .++.... .+.|++|-+..|. +.....+.|..++.|++|||++|.=-+.+|..++.|-+|++|+
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 5677777788776 4444333 3479999999996 5533445588899999999999887789999999999999999
Q ss_pred ccCCCCcccCchhhhCCCCCCEEEccCCCCCCCCCc
Q 013931 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (433)
Q Consensus 152 l~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 187 (433)
+++..+. .+|..+.+|..|.+|++..+.....+|.
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~ 636 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG 636 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheeccccccccccccc
Confidence 9999999 9999999999999999999887666654
No 61
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.81 E-value=4.8e-06 Score=83.14 Aligned_cols=107 Identities=21% Similarity=0.278 Sum_probs=86.0
Q ss_pred CEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEcc
Q 013931 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (433)
Q Consensus 74 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~ 153 (433)
.+..+++..|.+.. +-..+..+++|+.|++.+|+|. .+...+..+++|++|+|++|.|+. + ..+..+..|+.|+++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~-i-~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK-L-EGLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccc-c-cchhhccchhhheec
Confidence 45666688888773 3344888999999999999998 455447889999999999999984 3 356778889999999
Q ss_pred CCCCcccCchhhhCCCCCCEEEccCCCCCCCCC
Q 013931 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (433)
Q Consensus 154 ~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 186 (433)
+|.+. .+. .+..+..|+.+++++|.++..-+
T Consensus 149 ~N~i~-~~~-~~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 149 GNLIS-DIS-GLESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred cCcch-hcc-CCccchhhhcccCCcchhhhhhh
Confidence 99998 443 35568999999999999986655
No 62
>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]
Probab=97.80 E-value=3e-05 Score=76.71 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=43.7
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|.||.||||.-. +++.||+|.+... +......+...+||+++.+++|+.
T Consensus 8 e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~---gr~~k~l~~l~~ev~i~r~lkHpn 62 (808)
T KOG0597|consen 8 EMIGEGSFGRVYKGRRKYTIQVVAIKFIDKS---GRNEKELKNLRQEVRILRSLKHPN 62 (808)
T ss_pred HHhcCCccceeeecccccceeEEEEEEehhc---CCchHHHHHHHHHHHHHHhcCCcc
Confidence 67999999999999874 5788999999642 223344577999999999999973
No 63
>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]
Probab=97.78 E-value=4.2e-05 Score=70.19 Aligned_cols=54 Identities=13% Similarity=0.133 Sum_probs=42.2
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
-++|+|+||+|||..-. .|+.||||++-++.. ++.-.+--++||++|.+++|..
T Consensus 8 gkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esed---d~~VkKIAlREIrmLKqLkH~N 62 (396)
T KOG0593|consen 8 GKVGEGSYGVVMKCRNKDTGQIVAIKKFVESED---DPVVKKIALREIRMLKQLKHEN 62 (396)
T ss_pred hccccCcceEEEEeccCCcccEEEEEeeccCCc---cHHHHHHHHHHHHHHHhcccch
Confidence 46899999999998875 599999999964332 1333445789999999999974
No 64
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=97.78 E-value=4.4e-05 Score=74.89 Aligned_cols=55 Identities=35% Similarity=0.548 Sum_probs=46.1
Q ss_pred hh-hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 374 FS-NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 374 f~-~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
|. ++||.|-||+||-|.-+ .|+.||||.+.... ....++.+..+||.+|.+++|.
T Consensus 567 f~devLGSGQFG~VYgg~hRktGrdVAvKvIdKlr---Fp~kqesqlR~EVaILq~l~HP 623 (888)
T KOG4236|consen 567 FADEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLR---FPTKQESQLRNEVAILQNLHHP 623 (888)
T ss_pred hhHhhccCCcceeeecceecccCceeeeeeeeccc---CCCchHHHHHHHHHHHHhcCCC
Confidence 44 89999999999999884 79999999996533 2244578999999999999996
No 65
>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk. Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr
Probab=97.78 E-value=3.3e-05 Score=71.70 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=43.6
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
++||+|+||.||+|...+++.||||++..... ...+|.+|++++.+++|..
T Consensus 12 ~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~------~~~~~~~E~~~l~~l~h~~ 62 (260)
T cd05067 12 KKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSM------SPEAFLAEANLMKQLQHPR 62 (260)
T ss_pred eeeccCccceEEeeecCCCceEEEEEecCCCC------cHHHHHHHHHHHHhcCCcC
Confidence 78999999999999999999999999863221 2468999999999999964
No 66
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=4e-05 Score=74.85 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=44.1
Q ss_pred hhhcCCCCcEEEEEE-eCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~-l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
++||+|.||.||||. +.+|..||.||+.-...+ +....-..+||.+|.++.|+.
T Consensus 123 ~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~---~~~~~t~~REI~ILr~l~HpN 177 (560)
T KOG0600|consen 123 EKIGEGTYGQVYKARDLETGKIVALKKVRFDNEK---EGFPITAIREIKILRRLDHPN 177 (560)
T ss_pred HHhcCcchhheeEeeecccCcEEEEEEeecccCC---CcchHHHHHHHHHHHhcCCCc
Confidence 679999999999987 468999999999754422 233567899999999999974
No 67
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=97.76 E-value=3.1e-05 Score=76.92 Aligned_cols=54 Identities=28% Similarity=0.385 Sum_probs=43.4
Q ss_pred hhhcCCCCcEEEEEEeCC--C--CE-EEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLSN--G--VE-IAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~--g--~~-VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++||+|+||.||+|.|.. + .. ||||+.+... ..+.....+|.+|.++|.+++|+
T Consensus 163 kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~--~~~~~~~~e~m~EArvMr~l~H~ 221 (474)
T KOG0194|consen 163 KKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSS--ELTKEQIKEFMKEARVMRQLNHP 221 (474)
T ss_pred ceeecccccEEEEEEEEecCCceeeeeEEEeecccc--cccHHHHHHHHHHHHHHHhCCCC
Confidence 789999999999999953 3 23 8999986411 13356688999999999999997
No 68
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=2.4e-05 Score=83.65 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=46.1
Q ss_pred HHhhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 370 ACEDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 370 at~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
-..+|. ..||+||||.|||..=. ||+..|||||.... +...-+...+||++|++++|.
T Consensus 477 Y~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~----s~~~~skI~rEVk~LArLnHp 537 (1351)
T KOG1035|consen 477 YLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKA----SDKLYSKILREVKLLARLNHP 537 (1351)
T ss_pred HhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCch----HHHHHHHHHHHHHHHhhcCCc
Confidence 445666 78999999999998743 99999999996433 133356788999999999995
No 69
>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor
Probab=97.72 E-value=4.7e-05 Score=71.02 Aligned_cols=53 Identities=11% Similarity=0.283 Sum_probs=42.8
Q ss_pred hhhcCCCCcEEEEEEeC----CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~----~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|.+. .+..||+|+++.... ....+.|.+|+.+|.+++|..
T Consensus 11 ~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~----~~~~~~~~~e~~~l~~l~h~~ 67 (266)
T cd05064 11 RILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCS----DKQRRGFLAEALTLGQFDHSN 67 (266)
T ss_pred eeecccCCCeEEEEEEecCCCceeeEEEEecCCCCC----HHHHHHHHHHHHHHhcCCCCC
Confidence 78999999999999873 467899999964322 233578999999999999974
No 70
>PHA02988 hypothetical protein; Provisional
Probab=97.70 E-value=4.2e-05 Score=72.26 Aligned_cols=68 Identities=13% Similarity=0.192 Sum_probs=50.9
Q ss_pred CCCCCCHHHHHHHHhhhhhhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 358 GVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 358 ~~~~~~~~el~~at~~f~~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
..+.+++++++..+. ..||+|++|.||+|.+ +|+.||||+++...... ....+.|.+|+++|.+++|.
T Consensus 11 ~~~~i~~~~i~~~~~---~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~--~~~~~~~~~E~~~l~~l~h~ 78 (283)
T PHA02988 11 DIKCIESDDIDKYTS---VLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGH--KVLIDITENEIKNLRRIDSN 78 (283)
T ss_pred cceecCHHHcCCCCC---eEEeeCCceEEEEEEE-CCEEEEEEecccccccc--HHHHHHHHHHHHHHHhcCCC
Confidence 445667777744311 6799999999999999 89999999996432211 22246799999999999997
No 71
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=97.69 E-value=3.5e-05 Score=78.27 Aligned_cols=61 Identities=11% Similarity=0.171 Sum_probs=39.6
Q ss_pred Hhhhh--hhhcCCCCcEEEEEEe-----------------CCCCEEEEEEeeecCCCCCc---------hhHHHHHHHHH
Q 013931 371 CEDFS--NVIGSSPIGTVYKGTL-----------------SNGVEIAVASVSVASAKDWP---------KNLEVQFRKKV 422 (433)
Q Consensus 371 t~~f~--~~iG~G~fG~VYkg~l-----------------~~g~~VAVK~l~~~~~~~~~---------~~~~~~F~~Ev 422 (433)
+++|. ++||+|+||.||+|.+ .+++.||||++......... ......+..|+
T Consensus 144 ~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~ 223 (507)
T PLN03224 144 SDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEA 223 (507)
T ss_pred ccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHH
Confidence 55677 8999999999999975 35678999999643221100 00112344577
Q ss_pred HHhhhcccC
Q 013931 423 IYQQLLISK 431 (433)
Q Consensus 423 ~~L~~l~H~ 431 (433)
.++.+++|.
T Consensus 224 ~~l~~l~~~ 232 (507)
T PLN03224 224 YMCAKIKRN 232 (507)
T ss_pred HHHHHhhcc
Confidence 777777664
No 72
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=97.68 E-value=5e-05 Score=76.89 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=43.3
Q ss_pred hhhcCCCCcEEEEEEeC--CCCE--EEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS--NGVE--IAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~--~g~~--VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
++||+|.||.|++|.+. +|.. ||||.|+...-. ....+|++|+.+|-+++|+-
T Consensus 116 e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~----~~mddflrEas~M~~L~H~h 172 (1039)
T KOG0199|consen 116 ELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLN----AIMDDFLREASHMLKLQHPH 172 (1039)
T ss_pred HHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccc----hhHHHHHHHHHHHHhccCcc
Confidence 78999999999999984 5654 799999754432 23689999999999999973
No 73
>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i
Probab=97.67 E-value=4.5e-05 Score=71.98 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=42.4
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||++.. .+|+.||||++....... ......|.+|+++|.+++|+
T Consensus 6 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~E~~il~~l~~~ 60 (285)
T cd05631 6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK--RKGEAMALNEKRILEKVNSR 60 (285)
T ss_pred EEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhh--hhhHHHHHHHHHHHHhcCCC
Confidence 6799999999999987 579999999986432211 22245689999999999986
No 74
>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa
Probab=97.66 E-value=5.6e-05 Score=70.11 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=43.4
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
++||+|+||.||+|...+++.||||++.... ....+|.+|+.++.+++|.+
T Consensus 12 ~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~------~~~~~~~~e~~~l~~l~h~~ 62 (261)
T cd05072 12 KKLGAGQFGEVWMGYYNNSTKVAVKTLKPGT------MSVQAFLEEANLMKTLQHDK 62 (261)
T ss_pred eecCCcCCceEEEEEecCCceEEEEEccCCc------hhHHHHHHHHHHHHhCCCCC
Confidence 7899999999999999899999999985321 12468999999999999974
No 75
>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment
Probab=97.65 E-value=8.6e-05 Score=69.14 Aligned_cols=57 Identities=18% Similarity=0.311 Sum_probs=44.0
Q ss_pred hhhh--hhhcCCCCcEEEEEEeCC----CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l~~----g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
++|. +.||+|+||.||+|+... ...||||++.... ......+|.+|+.++.+++|..
T Consensus 4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~----~~~~~~~~~~e~~~l~~l~h~~ 66 (266)
T cd05033 4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGS----SDKQRLDFLTEASIMGQFDHPN 66 (266)
T ss_pred HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCC----ChHHHHHHHHHHHHHHhCCCCC
Confidence 3444 889999999999999842 4579999986432 2334578999999999999974
No 76
>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a
Probab=97.64 E-value=4.7e-05 Score=70.69 Aligned_cols=50 Identities=18% Similarity=0.269 Sum_probs=42.8
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|...+++.||||+++... ...++|.+|++++.+++|.
T Consensus 12 ~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~------~~~~~~~~e~~~l~~l~h~ 61 (261)
T cd05068 12 RKLGAGQFGEVWEGLWNNTTPVAVKTLKPGT------MDPKDFLAEAQIMKKLRHP 61 (261)
T ss_pred EEecccCCccEEEEEecCCeEEEEEeeCCCc------ccHHHHHHHHHHHHHCCCC
Confidence 8899999999999999888899999986422 1257899999999999996
No 77
>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V
Probab=97.64 E-value=4.4e-05 Score=73.93 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=41.2
Q ss_pred hhhcCCCCcEEEEEEe------CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc-ccCC
Q 013931 376 NVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL-ISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l------~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l-~H~~ 432 (433)
++||+|+||.||+|.. .+++.||||++..... ....+.|.+|+++|.++ +|++
T Consensus 13 ~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~~E~~~l~~l~~h~n 72 (338)
T cd05102 13 KVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGAT----ASEHKALMSELKILIHIGNHLN 72 (338)
T ss_pred eEeccCCcceEEEEEEeccCCcccchhhheeccccccc----hHHHHHHHHHHHHHHHhccCcc
Confidence 7899999999999974 2457899999963222 22356799999999999 7863
No 78
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.63 E-value=7.5e-05 Score=64.69 Aligned_cols=103 Identities=18% Similarity=0.247 Sum_probs=74.5
Q ss_pred EEEEecCCCCcccCccccc-CCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEccC
Q 013931 76 VNLNLKDLCLEGTLAPEIQ-SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN 154 (433)
Q Consensus 76 ~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~ 154 (433)
++++|.+.++. .+-. ++ -+.+...+||++|.+. .+ +.|..++.|.+|.|++|+|+..-|.--.-+++|+.|.|.+
T Consensus 22 ~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccc-chhh-ccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 45666666554 1111 22 2356788999999996 33 4688999999999999999954444334457899999999
Q ss_pred CCCcccCch--hhhCCCCCCEEEccCCCCCC
Q 013931 155 NDFVGSLSP--EIYKLQVLSESQVDEGQLSS 183 (433)
Q Consensus 155 N~l~~~~p~--~l~~l~~L~~L~l~~n~l~~ 183 (433)
|++. .+-+ .+..++.|++|.+-+|..+.
T Consensus 98 Nsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 98 NSIQ-ELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred cchh-hhhhcchhccCCccceeeecCCchhc
Confidence 9997 3322 36678899999999998874
No 79
>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]
Probab=97.63 E-value=0.00011 Score=68.79 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=43.4
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
++||+|.||+||||+- .+|+.||+|++.....++. ....-.+||.+|.+++|.|
T Consensus 17 eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG---~P~taiREisllk~L~~~~ 71 (323)
T KOG0594|consen 17 EKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEG---VPSTAIREISLLKRLSHAN 71 (323)
T ss_pred HHhCCCCceEEEEEEEecCCCEEEEEEEeccccccC---CCchhhHHHHHHHHhCCCc
Confidence 6799999999999987 4789999999976554211 1244689999999999998
No 80
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=1.6e-05 Score=76.29 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=26.9
Q ss_pred CCcCceeecccccCCCCCc--hhccCCCCCcEEEccCCCCccc-Cchh-----hhCCCCCCEEEccCCCC
Q 013931 120 LEELEVLDFGHNNFSGPLP--NDLGINHSLTILLLDNNDFVGS-LSPE-----IYKLQVLSESQVDEGQL 181 (433)
Q Consensus 120 l~~L~~L~ls~N~l~~~~p--~~~~~l~~L~~L~l~~N~l~~~-~p~~-----l~~l~~L~~L~l~~n~l 181 (433)
+..|+.|||++|.+. ..+ ...+.++.|+.|+++.+.+... +|+. ...+++|++|++..|++
T Consensus 245 ~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 444555555555544 222 1234445555555555544321 1211 22344555555555554
No 81
>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k
Probab=97.61 E-value=0.0001 Score=70.19 Aligned_cols=53 Identities=23% Similarity=0.209 Sum_probs=41.5
Q ss_pred hhhcCCCCcEEEEEEeCC-----------------CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSN-----------------GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~-----------------g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
++||+|+||.||++..++ +..||||.+.... ......+|.+|+++|.+++|++
T Consensus 11 ~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~h~n 80 (304)
T cd05096 11 EKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDA----NKNARNDFLKEVKILSRLKDPN 80 (304)
T ss_pred eEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCC----CHHHHHHHHHHHHHHhhcCCCC
Confidence 789999999999998643 3469999986422 1333578999999999999974
No 82
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=97.61 E-value=6.1e-05 Score=80.70 Aligned_cols=54 Identities=28% Similarity=0.439 Sum_probs=44.5
Q ss_pred hhhhhcCCCCcEEEEEEeCC--CC----EEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 374 FSNVIGSSPIGTVYKGTLSN--GV----EIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 374 f~~~iG~G~fG~VYkg~l~~--g~----~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
|.+.||+|+||.||+|++.+ |. .||||+++.... .+...+|..|..+|+++.|.
T Consensus 696 l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~----~~~~~~Fl~Ea~~m~~f~Hp 755 (1025)
T KOG1095|consen 696 LLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSS----EQEVSDFLKEALLMSKFDHP 755 (1025)
T ss_pred eeeeeccccccceEEEEEecCCCCccceEEEEEeccccCC----HHHHHHHHHHHHHHhcCCCc
Confidence 34889999999999999953 43 489999975443 55588999999999999997
No 83
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.60 E-value=7.9e-05 Score=71.07 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=45.2
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCch--hHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPK--NLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~--~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.|-+|.= .+|+.||||.++.....+.++ ......++|+++|.+++|.|
T Consensus 178 ~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~ 237 (475)
T KOG0615|consen 178 KTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPN 237 (475)
T ss_pred eeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCC
Confidence 7899999999999875 479999999997655444221 22445689999999999998
No 84
>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1. Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops
Probab=97.59 E-value=0.00014 Score=67.02 Aligned_cols=57 Identities=25% Similarity=0.316 Sum_probs=46.3
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|+.. +++.||||.+.........+...++|.+|++++.+++|..
T Consensus 6 ~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~ 63 (258)
T cd06632 6 ELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPN 63 (258)
T ss_pred ceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCC
Confidence 67999999999999986 7999999998654433333445678999999999999974
No 85
>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h
Probab=97.58 E-value=8.7e-05 Score=68.67 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=42.4
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||++.+.++..+|||++.... ....+|.+|+++|.+++|.
T Consensus 10 ~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~------~~~~~~~~e~~~l~~l~h~ 59 (256)
T cd05114 10 KELGSGQFGVVHLGKWRAQIKVAIKAINEGA------MSEEDFIEEAKVMMKLSHP 59 (256)
T ss_pred eEecCCcCceEEEEEeccCceEEEEecccCC------ccHHHHHHHHHHHHHCCCC
Confidence 7799999999999999888899999985322 1257899999999999996
No 86
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=97.58 E-value=8.7e-05 Score=73.14 Aligned_cols=53 Identities=13% Similarity=0.163 Sum_probs=41.0
Q ss_pred hhhcCCCCcEEEEEEe------CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc-ccCC
Q 013931 376 NVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL-ISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l------~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l-~H~~ 432 (433)
+.||+|+||.||+|.. +.+..||||+++.... ......|.+|+++|..+ +|+.
T Consensus 41 ~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~----~~~~~~~~~Ei~il~~l~~Hpn 100 (375)
T cd05104 41 KTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAH----LTEREALMSELKVLSYLGNHIN 100 (375)
T ss_pred heecCCccceEEEEEEeccccCccceeEEEEeccCCcC----cHHHHHHHHHHHHHHHhcCCcc
Confidence 8899999999999973 3466899999964322 22246799999999999 7863
No 87
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=97.57 E-value=0.0001 Score=70.75 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=41.5
Q ss_pred hhhcCCCCcEEEEEEeC-CCCE----EEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVE----IAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~----VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|+.. +|+. ||||+++.... ....++|.+|+.++..++|+.
T Consensus 13 ~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~e~~~l~~l~h~n 70 (316)
T cd05108 13 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS----PKANKEILDEAYVMASVDNPH 70 (316)
T ss_pred eeeecCCCceEEEEEEecCCCccceeEEEEeccccCC----HHHHHHHHHHHHHHHhCCCCC
Confidence 78999999999999863 4443 89999863221 334678999999999999974
No 88
>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=97.57 E-value=0.00013 Score=67.66 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=43.3
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|..+++..||+|.+..... ...+|.+|++++.+++|..
T Consensus 12 ~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~------~~~~~~~E~~~l~~l~~~~ 62 (260)
T cd05070 12 KKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM------SPESFLEEAQIMKKLRHDK 62 (260)
T ss_pred heeccccCceEEEEEecCCceeEEEEecCCCC------CHHHHHHHHHHHHhcCCCc
Confidence 78999999999999998899999999864222 1467999999999999974
No 89
>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp
Probab=97.56 E-value=9.2e-05 Score=71.99 Aligned_cols=52 Identities=10% Similarity=0.111 Sum_probs=40.5
Q ss_pred hhhcCCCCcEEEEEEe------CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc-ccC
Q 013931 376 NVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL-ISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l------~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l-~H~ 431 (433)
+.||+|+||.||+|.. .+++.||||+++.... ....+.+.+|+++|.++ +|.
T Consensus 13 ~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~~E~~~l~~l~~h~ 71 (343)
T cd05103 13 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT----HSEHRALMSELKILIHIGHHL 71 (343)
T ss_pred ccccCCccceEEEEeeccCCccccceeEEEEEeccCCC----hHHHHHHHHHHHHHHhccCCc
Confidence 7899999999999963 4678999999964322 22356799999999999 454
No 90
>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=97.56 E-value=0.00012 Score=68.78 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=42.6
Q ss_pred hhhcCCCCcEEEEEEe-----CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-----SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-----~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|.. +++..||||++..... .....+|.+|++++.+++|..
T Consensus 11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~----~~~~~~~~~E~~~l~~l~h~n 68 (283)
T cd05090 11 EELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINN----PQQWGEFQQEASLMAELHHPN 68 (283)
T ss_pred eeccccCCcceEEEEEecCCCCCcceEEEEeccCCCC----HHHHHHHHHHHHHHhhCCCCC
Confidence 7899999999999985 3668899999963221 333578999999999999974
No 91
>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity. Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....
Probab=97.55 E-value=7.8e-05 Score=69.33 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=42.8
Q ss_pred hhhcCCCCcEEEEEEeC-----CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-----NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-----~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||.|.||.||+|.+. .++.|+||+++.. .+.....+|.+|++.|.+++|.
T Consensus 5 ~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~----~~~~~~~~~~~e~~~l~~l~h~ 61 (259)
T PF07714_consen 5 KQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPS----SSEEEEEEFLNEIQILRKLRHP 61 (259)
T ss_dssp EEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTT----SSHHHHHHHHHHHHHHHTHSBT
T ss_pred eEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccc----cccccceeeeeccccccccccc
Confidence 57999999999999996 3678999999532 2233468999999999999997
No 92
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.0001 Score=69.34 Aligned_cols=48 Identities=23% Similarity=0.294 Sum_probs=38.0
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+++|.|+||.||+|++. .++.|||||.-... +-=-+|+++|.++.|+.
T Consensus 30 ~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~---------r~knrEl~im~~l~HpN 78 (364)
T KOG0658|consen 30 RLIGSGSFGVVYQAKLRETEEEVAIKKVLQDK---------RYKNRELQIMRKLDHPN 78 (364)
T ss_pred EEEeecccceEEEEEEcCCCceeEEEEecCCC---------CcCcHHHHHHHhcCCcC
Confidence 78999999999999994 57899999985222 22346888999999973
No 93
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=97.52 E-value=0.00018 Score=63.67 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=27.3
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeec
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVA 405 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~ 405 (433)
..||+|+||.||+|..++|+.||||+++..
T Consensus 3 ~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~ 32 (190)
T cd05147 3 GCISTGKEANVYHATTANGEERAIKIYKTS 32 (190)
T ss_pred CccccccceEEEEEECCCCCEEEEEEEEec
Confidence 469999999999999989999999999754
No 94
>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase
Probab=97.51 E-value=0.00017 Score=66.99 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=44.0
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +|+.||||++...... ......+|.+|++++.+++|.+
T Consensus 8 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~ 63 (267)
T cd08228 8 KKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMM--DAKARQDCVKEIDLLKQLNHPN 63 (267)
T ss_pred eeeccCCCeeEEEEEEeCCCCEEEEEEeeccccC--CHHHHHHHHHHHHHHHhCCCcc
Confidence 78999999999999864 7899999988643221 1334567999999999999975
No 95
>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po
Probab=97.50 E-value=0.00012 Score=72.41 Aligned_cols=55 Identities=9% Similarity=0.061 Sum_probs=42.9
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||+||+|.. .+|+.||||++....... ......|.+|+++|.+++|..
T Consensus 7 ~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~--~~~~~~~~~E~~il~~l~h~~ 62 (381)
T cd05626 7 KTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLN--RNQVAHVKAERDILAEADNEW 62 (381)
T ss_pred EEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhh--hHHHHHHHHHHHHHHhcCCCC
Confidence 6799999999999986 468899999996422111 223467999999999999974
No 96
>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a
Probab=97.50 E-value=0.00015 Score=67.24 Aligned_cols=54 Identities=20% Similarity=0.240 Sum_probs=43.9
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|... +|+.||||.++.....+ .....++.+|++++.+++|.
T Consensus 8 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~~~ei~~l~~~~~~ 62 (267)
T cd08224 8 KKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMD--AKARQDCLKEIDLLKQLDHP 62 (267)
T ss_pred eeeccCCceEEEEEEEcCCCCEEEEEEeecccccc--hhhHHHHHHHHHHHHhCCCC
Confidence 78999999999999986 89999999986432222 23357899999999999996
No 97
>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt
Probab=97.50 E-value=0.0002 Score=67.04 Aligned_cols=52 Identities=13% Similarity=0.263 Sum_probs=42.2
Q ss_pred hhhcCCCCcEEEEEEeCC------CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~------g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|...+ ++.||||.++.... .....+|.+|+++|.+++|.
T Consensus 11 ~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~e~~~l~~l~~~ 68 (280)
T cd05049 11 RELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETAS----NDARKDFEREAELLTNFQHE 68 (280)
T ss_pred hhccccCCceEeeeeeccccCcCCcceEEEEeecccCC----HHHHHHHHHHHHHHHhcCCC
Confidence 789999999999998743 47899999864322 22357899999999999996
No 98
>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=97.49 E-value=0.00014 Score=67.38 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=42.8
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++||+|+||.||+|...+++.||||.+..... ...+|.+|++++.+++|.
T Consensus 12 ~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~------~~~~~~~e~~~l~~l~h~ 61 (261)
T cd05034 12 RKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTM------SPEAFLQEAQIMKKLRHD 61 (261)
T ss_pred eeeccCcceEEEEEEEcCCceEEEEEecCCcc------CHHHHHHHHHHHhhCCCC
Confidence 78999999999999998889999999863221 247899999999999996
No 99
>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=0.00011 Score=66.92 Aligned_cols=53 Identities=21% Similarity=0.255 Sum_probs=44.1
Q ss_pred hhhcCCCCcEEEEEE-eCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~-l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++||+|.||.|||+. +.+|..||-|+++- ...+.+..++...||.+|.+++|.
T Consensus 25 ~~IG~GsFg~vykv~~~~~g~l~a~K~i~f---~~md~k~rq~~v~Ei~lLkQL~Hp 78 (375)
T KOG0591|consen 25 KKIGRGSFGEVYKVQCLLDGKLVALKKIQF---GMMDAKARQDCVKEISLLKQLNHP 78 (375)
T ss_pred HHHcCCcchheEEeeeccCcchhhhhhcch---hhccHHHHHHHHHHHHHHHhcCCc
Confidence 789999999999965 68999999999962 122355567899999999999996
No 100
>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase. Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription
Probab=97.48 E-value=0.00016 Score=71.09 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=42.6
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||++.- .+|+.||||++..... .....+++.+|+++|..++|+
T Consensus 6 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~ 59 (372)
T cd07853 6 RPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQ---NLVSCKRVFRELKMLCFFKHD 59 (372)
T ss_pred ceeeeCCCEEEEEEEECCCCCEEEEEecccccc---chHHHHHHHHHHHHHHhCCCC
Confidence 7899999999999986 4799999999853221 122356799999999999996
No 101
>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt
Probab=97.48 E-value=0.00014 Score=68.98 Aligned_cols=55 Identities=9% Similarity=0.040 Sum_probs=43.0
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++.-. +|+.||||++....... ......|.+|+++|.+++|+.
T Consensus 7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~ 62 (291)
T cd05612 7 KTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIR--LKQEQHVHNEKRVLKEVSHPF 62 (291)
T ss_pred eeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhh--hHHHHHHHHHHHHHHhCCCCc
Confidence 68999999999999975 68999999996322111 223467999999999999974
No 102
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=97.48 E-value=0.00019 Score=71.34 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=40.8
Q ss_pred hhhcCCCCcEEEEEEeC------CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc-cCC
Q 013931 376 NVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI-SKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~------~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~-H~~ 432 (433)
+.||+|+||.||+|+.. .+..||||++..... ......|.+|+++|.++. |++
T Consensus 43 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~----~~~~~~~~~Ei~~l~~l~~Hpn 102 (400)
T cd05105 43 RILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTAR----SSEKQALMSELKIMTHLGPHLN 102 (400)
T ss_pred heecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCC----hHHHHHHHHHHHHHHhcCCCCC
Confidence 78999999999999852 234699999964322 223467999999999996 874
No 103
>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13
Probab=97.47 E-value=0.00018 Score=69.93 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=49.0
Q ss_pred CHHHHHHHH----hhhh--hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 363 KRSELEAAC----EDFS--NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 363 ~~~el~~at----~~f~--~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
..+|+.+++ ++|. +.||+|+||.||+|+. .+|+.||||++...... ......+.+|++++.+++|..
T Consensus 2 ~~~~~~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~n 75 (342)
T cd07879 2 YREEVNKTVWELPERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQS---EIFAKRAYRELTLLKHMQHEN 75 (342)
T ss_pred chhhhhhhhhccccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCcccc---ccchhHHHHHHHHHHhcCCCC
Confidence 344555554 4554 8899999999999986 47999999998632211 122457899999999999973
No 104
>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th
Probab=97.46 E-value=0.00023 Score=66.90 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=42.6
Q ss_pred hhhcCCCCcEEEEEEeC-----CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-----NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-----~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++.++ +|..||||++.... ....++|.+|+++|.+++|.+
T Consensus 10 ~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~-----~~~~~~~~~e~~~l~~l~h~~ 66 (284)
T cd05081 10 QQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHST-----AEHLRDFEREIEILKSLQHDN 66 (284)
T ss_pred eeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCC-----HHHHHHHHHHHHHHHhCCCCC
Confidence 67999999999999863 58899999986422 233578999999999999974
No 105
>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica
Probab=97.46 E-value=0.00012 Score=71.76 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=42.9
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||+||++.-. +|+.||||++....... ......|.+|+++|..++|.+
T Consensus 7 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~E~~il~~l~h~~ 62 (364)
T cd05599 7 KVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLE--KEQVAHVRAERDILAEADNPW 62 (364)
T ss_pred EEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhCCCCC
Confidence 78999999999999874 68999999996422111 223466899999999999974
No 106
>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase. Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ
Probab=97.46 E-value=0.00019 Score=66.96 Aligned_cols=58 Identities=19% Similarity=0.326 Sum_probs=45.2
Q ss_pred HHHhhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc-ccCC
Q 013931 369 AACEDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL-ISKC 432 (433)
Q Consensus 369 ~at~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l-~H~~ 432 (433)
.+++.|. +.||+|+||.||+|... +++.||||++..... ...++.+|++++.++ +|++
T Consensus 3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~------~~~~~~~e~~~l~~~~~h~~ 64 (272)
T cd06637 3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD------EEEEIKQEINMLKKYSHHRN 64 (272)
T ss_pred ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCc------cHHHHHHHHHHHHHhcCCCC
Confidence 3556666 78999999999999874 688899999864221 246899999999998 6864
No 107
>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14
Probab=97.45 E-value=0.00015 Score=70.55 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=51.9
Q ss_pred CCHHHHHHHHhhhh--hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 362 LKRSELEAACEDFS--NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 362 ~~~~el~~at~~f~--~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
....++..++++|. ..||+|+||.||+|.. .+|+.||||++..... .......+.+|++++.+++|+
T Consensus 7 ~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~Ei~~l~~l~h~ 76 (345)
T cd07877 7 ELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ---SIIHAKRTYRELRLLKHMKHE 76 (345)
T ss_pred hHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcch---hhHHHHHHHHHHHHHHHcCCC
Confidence 34456677788887 7899999999999985 5799999999963221 122346788999999999996
No 108
>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.45 E-value=0.00017 Score=69.41 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=42.4
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhccc
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLIS 430 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H 430 (433)
+.||+|.||.||||.-. .++.||+|.+......+. ..+.++||.+|+.++|
T Consensus 19 ~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~de----Iediqqei~~Ls~~~~ 70 (467)
T KOG0201|consen 19 ELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDE----IEDIQQEISVLSQCDS 70 (467)
T ss_pred hhccccccceeeeeeeccccceEEEEEechhhcchh----hHHHHHHHHHHHhcCc
Confidence 67999999999999963 477899999976555442 5789999999999887
No 109
>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom
Probab=97.45 E-value=0.00016 Score=66.95 Aligned_cols=57 Identities=26% Similarity=0.380 Sum_probs=46.3
Q ss_pred HHhhhh--hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 370 ACEDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 370 at~~f~--~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+..+|. +.||+|+||.||+|...+++.||+|.+..... ....++..|+.++.+++|.
T Consensus 4 ~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~-----~~~~~~~~e~~~l~~l~~~ 62 (261)
T cd05148 4 PREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDL-----LKQQDFQKEVQALKRLRHK 62 (261)
T ss_pred cHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccch-----hhHHHHHHHHHHHhcCCCc
Confidence 344555 88999999999999998899999999864322 2256799999999999986
No 110
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=97.44 E-value=0.00017 Score=67.15 Aligned_cols=54 Identities=13% Similarity=0.165 Sum_probs=42.4
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
|.|++|.||.||||.-. +++.||.||++.....+ ...-.-.+||.+|.+++|+.
T Consensus 82 nrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~---GFPItsLREIniLl~~~H~N 136 (419)
T KOG0663|consen 82 NRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKE---GFPITSLREINILLKARHPN 136 (419)
T ss_pred hhcccCcceeEEEeccCCcceeEEeeecccccccC---CCcchhHHHHHHHHhcCCCC
Confidence 88999999999999863 67889999997543221 11244689999999999974
No 111
>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,
Probab=97.43 E-value=0.00016 Score=68.31 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=42.0
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||++.. .+|+.||||++....... ......|.+|++++.+++|.
T Consensus 6 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~E~~~l~~l~h~ 60 (285)
T cd05605 6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK--RKGEAMALNEKQILEKVNSR 60 (285)
T ss_pred EEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhh--hhhHHHHHHHHHHHHhcCCC
Confidence 6799999999999986 468999999996432211 22246688999999999986
No 112
>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with
Probab=97.43 E-value=0.0002 Score=67.63 Aligned_cols=54 Identities=17% Similarity=0.154 Sum_probs=41.9
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||+||+|.. .+|+.||||.+....... ......+.+|+++|.+++|.
T Consensus 6 ~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~il~~l~~~ 60 (285)
T cd05632 6 RVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKK--RKGESMALNEKQILEKVNSQ 60 (285)
T ss_pred EEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhh--hhHHHHHHHHHHHHHHcCCc
Confidence 6799999999999987 468999999996432211 12245688999999999986
No 113
>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase. Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M
Probab=97.43 E-value=0.00022 Score=67.24 Aligned_cols=56 Identities=13% Similarity=0.258 Sum_probs=43.9
Q ss_pred hhhh--hhhcCCCCcEEEEEEeC------CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l~------~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++|. ..||+|+||.||++... ++..||||++.... .....++|.+|++++.+++|+
T Consensus 5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~----~~~~~~~~~~ei~~l~~l~h~ 68 (288)
T cd05050 5 NNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA----SADMQADFQREAALMAEFDHP 68 (288)
T ss_pred HhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCc----CHHHHHHHHHHHHHHHhcCCC
Confidence 4455 78999999999999863 46789999986322 233457899999999999996
No 114
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=4.2e-05 Score=73.40 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=80.7
Q ss_pred CCEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCc--cccCCCCcCceeecccccCCC-CCchh-----ccCC
Q 013931 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIP--EGFGELEELEVLDFGHNNFSG-PLPND-----LGIN 144 (433)
Q Consensus 73 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~ls~N~l~~-~~p~~-----~~~l 144 (433)
+++..|+|..|............+..|+.|||++|++. ..+ ...+.++.|+.|+++.+.+.. .+|+. ...+
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 56777777777533233334556788999999999987 444 456789999999999998862 23332 3567
Q ss_pred CCCcEEEccCCCCcccCc--hhhhCCCCCCEEEccCCCCCCC
Q 013931 145 HSLTILLLDNNDFVGSLS--PEIYKLQVLSESQVDEGQLSSA 184 (433)
Q Consensus 145 ~~L~~L~l~~N~l~~~~p--~~l~~l~~L~~L~l~~n~l~~~ 184 (433)
++|++|+++.|++. ..+ ..+..+.+|++|.+..|.|+-+
T Consensus 301 ~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 301 PKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccceeeecccCccc-cccccchhhccchhhhhhccccccccc
Confidence 89999999999996 333 3466788999999999998744
No 115
>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re
Probab=97.42 E-value=0.00026 Score=65.77 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=43.3
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|... +|..||||++.............+.|.+|+.++.+++|.
T Consensus 8 ~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ 64 (265)
T cd06652 8 KLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHE 64 (265)
T ss_pred eEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCC
Confidence 78999999999999874 589999999854322222233356799999999999996
No 116
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=97.41 E-value=0.00017 Score=71.14 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=40.2
Q ss_pred hhhcCCCCcEEEEEEe------CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc-ccC
Q 013931 376 NVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL-ISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l------~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l-~H~ 431 (433)
+.||+|+||.||+|.. +++..||||++..... ......|.+|+++|..+ +|+
T Consensus 44 ~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~~E~~il~~l~~h~ 102 (374)
T cd05106 44 KTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAH----TDEREALMSELKILSHLGQHK 102 (374)
T ss_pred heecCCCcccEEEEEEecCCcccccceeEEEeccCCCC----HHHHHHHHHHHHHHHhhccCC
Confidence 8899999999999873 3456899999964322 22245799999999998 786
No 117
>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development
Probab=97.41 E-value=0.0003 Score=65.48 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=44.2
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... .|..||+|++...............|.+|+.++.+++|+.
T Consensus 8 ~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~ 65 (266)
T cd06651 8 KLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHER 65 (266)
T ss_pred ceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCC
Confidence 78999999999999874 6899999998643322222333567999999999999973
No 118
>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase). Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It
Probab=97.41 E-value=0.00024 Score=66.71 Aligned_cols=53 Identities=13% Similarity=0.163 Sum_probs=43.3
Q ss_pred hhhcCCCCcEEEEEEeCC-----CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSN-----GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~-----g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
++||+|+||.||+|...+ +..||+|++.... .......|.+|+.+|.++.|..
T Consensus 12 ~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~----~~~~~~~~~~e~~~l~~l~h~n 69 (280)
T cd05043 12 DLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHA----SEIQVTLLLQESCLLYGLSHQN 69 (280)
T ss_pred eeecccCCceEEEEEEecCCCCceeEEEEEEccCCC----CHHHHHHHHHHHHHHHhCCCCC
Confidence 789999999999999866 7889999986322 2334677999999999999973
No 119
>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is
Probab=97.40 E-value=0.00032 Score=68.07 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=44.6
Q ss_pred Hhhhh--hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 371 CEDFS--NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 371 t~~f~--~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
.+.|. +.||+|+||.||+|.. .+++.||||++..... .....+++.+|+++|.+++|+.
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~~ 75 (343)
T cd07878 14 PERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQ---SLIHARRTYRELRLLKHMKHEN 75 (343)
T ss_pred hhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhh---hhHHHHHHHHHHHHHHhcCCCc
Confidence 34454 7899999999999986 4788999999863221 1223467889999999999974
No 120
>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac
Probab=97.40 E-value=0.00026 Score=66.05 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=42.1
Q ss_pred hhhcCCCCcEEEEEEeC----CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~----~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|.+. .|+.||||++..... .....++|.+|+++|.+++|.
T Consensus 5 ~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~ 61 (273)
T cd05074 5 RMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIF---SSSDIEEFLREAACMKEFDHP 61 (273)
T ss_pred hcccCCCCCCEEeeEeeccCCCceEEEEEEeccccC---ChHHHHHHHHHHHHHhcCCCC
Confidence 67999999999999873 368899999864221 233467899999999999986
No 121
>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament
Probab=97.40 E-value=0.00026 Score=66.95 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=42.4
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|.-. +++.||||+++...... ....+.+|++++.+++|+.
T Consensus 11 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~----~~~~~~~E~~~l~~l~h~n 64 (288)
T cd07871 11 DKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEG----APCTAIREVSLLKNLKHAN 64 (288)
T ss_pred eEEecCCCEEEEEEEECCCCCEEEEEEecccccCC----cchhHHHHHHHHHhCCCCC
Confidence 67999999999999874 68899999986432221 2457889999999999974
No 122
>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=97.39 E-value=0.0003 Score=66.13 Aligned_cols=53 Identities=21% Similarity=0.381 Sum_probs=41.9
Q ss_pred hhhcCCCCcEEEEEEeC------CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~------~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +++.||||+++.... ....++|..|++++.+++|..
T Consensus 11 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~e~~~~~~l~h~~ 69 (283)
T cd05091 11 EELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAE----GPLREEFKHEAMMRSRLQHPN 69 (283)
T ss_pred HHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCC----HHHHHHHHHHHHHHhcCCCCC
Confidence 78999999999999873 357899999964321 223567999999999999963
No 123
>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=97.39 E-value=0.00024 Score=71.08 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=45.2
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|||..||+++- +.|+.||||++....-.. +.+.....+||++-+.+.|+.
T Consensus 24 ~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k--~~~reKv~~EIeIHr~L~Hpn 79 (592)
T KOG0575|consen 24 RFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKK--PKQREKVLNEIEIHRSLKHPN 79 (592)
T ss_pred eeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcC--cchHHHHHHHHHHHHhcCCCc
Confidence 7899999999999997 889999999996433222 334567999999999999973
No 124
>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.
Probab=97.38 E-value=0.00038 Score=64.69 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=43.7
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|.. .+|..+|||++......+ .....+|.+|++++..++|..
T Consensus 8 ~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~--~~~~~~~~~e~~~l~~~~h~~ 63 (267)
T cd08229 8 KKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMD--AKARADCIKEIDLLKQLNHPN 63 (267)
T ss_pred hhhcccCCeEEEEEeecCCCceEEEEeeeehhhhh--HHHHHHHHHHHHHHHHccCCc
Confidence 7899999999999996 589999999986432211 233568999999999999963
No 125
>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play
Probab=97.38 E-value=0.00027 Score=67.46 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=42.4
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +++.||||+++...... ....+.+|++++.+++|+.
T Consensus 12 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~----~~~~~~~E~~~l~~l~h~~ 65 (309)
T cd07872 12 EKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEG----APCTAIREVSLLKDLKHAN 65 (309)
T ss_pred EEecccCCEEEEEEEecCCCCeEEEEEeeccccCC----cchhHHHHHHHHHhCCCCC
Confidence 67999999999999874 67889999996433222 2456889999999999974
No 126
>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=97.38 E-value=0.00042 Score=65.21 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=42.7
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||+||++... +|+.||+|.+..... ....++|.+|++++..++|.
T Consensus 11 ~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~----~~~~~~~~~E~~~l~~l~h~ 63 (284)
T cd06620 11 SDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAK----SSVRKQILRELQIMHECRSP 63 (284)
T ss_pred HHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCc----chHHHHHHHHHHHHHHcCCC
Confidence 78999999999998864 689999999864322 33367899999999999986
No 127
>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=6.3e-05 Score=66.82 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=45.6
Q ss_pred hhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++|. +.||+|.||.||.|..+ ++-.||+|++....-. ...-++++.+||++-+.++|+
T Consensus 22 ~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~--~~~v~~qlrREiEIqs~L~hp 82 (281)
T KOG0580|consen 22 DDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQIL--KTQVEHQLRREIEIQSHLRHP 82 (281)
T ss_pred hhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHH--HhcchhhhhheeEeecccCCc
Confidence 4455 89999999999999985 5678999999543311 123368999999999999997
No 128
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.38 E-value=0.0003 Score=70.11 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=44.0
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||.|+||.||-+.- .+.++||||+++-...+ +.....++..||..|.+++|.
T Consensus 32 rEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQ--s~EKWqDIlKEVrFL~~l~HP 86 (948)
T KOG0577|consen 32 REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQ--SNEKWQDILKEVRFLRQLRHP 86 (948)
T ss_pred HHhcCCccceeEEeeccCccceeeeeeccccccc--cHHHHHHHHHHHHHHHhccCC
Confidence 7899999999999875 46788999999643332 245578999999999999997
No 129
>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes
Probab=97.38 E-value=0.00025 Score=66.85 Aligned_cols=54 Identities=13% Similarity=0.173 Sum_probs=43.1
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+++.. +++.||||++...... ......+.+|++++.+++|..
T Consensus 7 ~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~ 61 (287)
T cd07848 7 GVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEEN---EEVKETTLRELKMLRTLKQEN 61 (287)
T ss_pred EEecccCCEEEEEEEECCCCcEEEEEEEeccccc---ccchhhHHHHHHHHHhCCCcc
Confidence 67999999999999985 6789999999643221 223467899999999999974
No 130
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=97.38 E-value=0.00018 Score=69.48 Aligned_cols=55 Identities=11% Similarity=0.072 Sum_probs=43.5
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +|+.||||.+....... ....+.|.+|+++|.+++|+.
T Consensus 24 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~ 79 (329)
T PTZ00263 24 ETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILK--MKQVQHVAQEKSILMELSHPF 79 (329)
T ss_pred EEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhh--hhhHHHHHHHHHHHHhCCCCC
Confidence 78999999999999985 68899999996432111 223467999999999999974
No 131
>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an
Probab=97.37 E-value=0.00022 Score=67.97 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=42.0
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|... +|+.||||++....... ....+.+|+++|.+++|.
T Consensus 11 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~----~~~~~~~E~~~l~~l~h~ 63 (303)
T cd07869 11 EKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEG----TPFTAIREASLLKGLKHA 63 (303)
T ss_pred eeEEecCCEEEEEEEECCCCCEEEEEEeccccccc----cchhHHHHHHHHhhCCCC
Confidence 78999999999999975 78999999986433211 235688999999999996
No 132
>PTZ00284 protein kinase; Provisional
Probab=97.37 E-value=9e-05 Score=75.32 Aligned_cols=60 Identities=12% Similarity=0.202 Sum_probs=43.7
Q ss_pred HHHHHHhhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 366 ELEAACEDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 366 el~~at~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++...+++|. ++||+|+||+||+|... .++.||||+++... ...+++..|++++.+++|.
T Consensus 123 ~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~------~~~~~~~~e~~~l~~l~~~ 185 (467)
T PTZ00284 123 DIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP------KYTRDAKIEIQFMEKVRQA 185 (467)
T ss_pred ccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch------hhHHHHHHHHHHHHHHhhc
Confidence 3344556676 78999999999999874 57889999996321 1245677788888777663
No 133
>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase. Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ
Probab=97.37 E-value=0.00025 Score=65.42 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=42.6
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|...+++.+|||.+..... ...+|.+|++++.++.|+.
T Consensus 10 ~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~------~~~~~~~e~~~l~~l~~~~ 60 (256)
T cd05112 10 QEIGSGQFGLVWLGYWLEKRKVAIKTIREGAM------SEEDFIEEAQVMMKLSHPK 60 (256)
T ss_pred eeecCcccceEEEEEEeCCCeEEEEECCCCCC------CHHHHHHHHHHHHhCCCCC
Confidence 78999999999999987789999999853221 2468999999999999964
No 134
>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p
Probab=97.36 E-value=0.00028 Score=67.55 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=40.3
Q ss_pred hhhcCCCCcEEEEEEeC---CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~---~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
.+||+|+||.||+|... +++.||||++.... ...++.+|+++|.+++|..
T Consensus 7 ~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~-------~~~~~~~E~~~l~~l~h~n 59 (317)
T cd07868 7 CKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG-------ISMSACREIALLRELKHPN 59 (317)
T ss_pred cccccCCCeEEEEEEEccCCCCceEEEEEECCCC-------CcHHHHHHHHHHHhcCCCC
Confidence 67999999999999864 46789999985321 1356889999999999973
No 135
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=97.36 E-value=0.00026 Score=65.83 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=42.3
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
.+||+|+||.||+|...+...||||++..... ...+|.+|++++.+++|..
T Consensus 12 ~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~------~~~~~~~E~~~l~~l~~~~ 62 (262)
T cd05071 12 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM------SPEAFLQEAQVMKKLRHEK 62 (262)
T ss_pred eecCCCCCCcEEEEEecCCceEEEEecccCcc------CHHHHHHHHHHHHhCCCCC
Confidence 67999999999999988778899999963221 2467999999999999963
No 136
>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=97.36 E-value=0.00036 Score=64.89 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=42.4
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|+. .+|+.||||++...... ....+.+|+.++.+++|..
T Consensus 15 ~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~-----~~~~~~~e~~~l~~~~h~~ 67 (267)
T cd06646 15 QRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGD-----DFSLIQQEIFMVKECKHCN 67 (267)
T ss_pred heeecCCCeEEEEEEECCCCeEEEEEEEecCccc-----hHHHHHHHHHHHHhcCCCC
Confidence 7899999999999996 57899999999643222 2467899999999999974
No 137
>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well
Probab=97.35 E-value=0.00023 Score=66.77 Aligned_cols=58 Identities=16% Similarity=0.346 Sum_probs=45.0
Q ss_pred HHhhhh--hhhcCCCCcEEEEEEeCC------CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 370 ACEDFS--NVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 370 at~~f~--~~iG~G~fG~VYkg~l~~------g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++++|. +.||+|+||.||+|...+ +..||+|.+.... ....+.+|..|+.++.+++|.
T Consensus 4 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~----~~~~~~~~~~e~~~l~~l~~~ 69 (277)
T cd05036 4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESC----SEQDESDFLMEALIMSKFNHQ 69 (277)
T ss_pred CHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCC----CHHHHHHHHHHHHHHHhCCCC
Confidence 345666 889999999999999854 5678999875322 233457899999999999996
No 138
>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely
Probab=97.34 E-value=0.0004 Score=65.88 Aligned_cols=59 Identities=20% Similarity=0.363 Sum_probs=46.4
Q ss_pred HHhhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 370 ACEDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 370 at~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.++|. +.||+|+||.||+|... +|+.||||+++..... ......+.+|++++.+++|.
T Consensus 5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~---~~~~~~~~~e~~~~~~l~h~ 66 (302)
T cd07864 5 CVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEK---EGFPITAIREIKILRQLNHR 66 (302)
T ss_pred hhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccc---cCchHHHHHHHHHHHhCCCC
Confidence 455665 88999999999999985 6899999999653321 12246788999999999996
No 139
>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored
Probab=97.34 E-value=0.00034 Score=65.14 Aligned_cols=57 Identities=18% Similarity=0.349 Sum_probs=43.6
Q ss_pred hhhh--hhhcCCCCcEEEEEEeC-CCC---EEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTLS-NGV---EIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l~-~g~---~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
++|. +.||+|+||.||+|... +++ .||||++..... ....++|.+|++++.+++|..
T Consensus 5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~----~~~~~~~~~e~~~l~~l~h~~ 67 (268)
T cd05063 5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYT----EKQRQDFLSEASIMGQFSHHN 67 (268)
T ss_pred HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCC----HHHHHHHHHHHHHHhcCCCCC
Confidence 4555 88999999999999985 333 799999864221 233578999999999999873
No 140
>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu
Probab=97.33 E-value=0.0004 Score=64.69 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=41.5
Q ss_pred hhhcCCCCcEEEEEEeCC----CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLSN----GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~----g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|.+.+ +..||||+++... .......+|.+|++.|.+++|.
T Consensus 5 ~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~~e~~~l~~l~h~ 61 (273)
T cd05035 5 KILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDI---HTYSEIEEFLSEAACMKDFDHP 61 (273)
T ss_pred cccCcCCCceEEEEEEecCCCCcceEEEEEeccCc---CCHHHHHHHHHHHHHHHhCCCC
Confidence 679999999999999842 3679999986422 1233356899999999999986
No 141
>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of
Probab=97.33 E-value=0.00021 Score=70.50 Aligned_cols=55 Identities=16% Similarity=0.054 Sum_probs=42.7
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++.- .+|+.||||++...... .....+.|.+|+++|.+++|.+
T Consensus 7 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~~~E~~il~~l~hp~ 62 (377)
T cd05629 7 KVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMF--KKDQLAHVKAERDVLAESDSPW 62 (377)
T ss_pred EEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHH--HhHHHHHHHHHHHHHHhCCCCC
Confidence 6899999999999876 47899999998542211 1223467999999999999974
No 142
>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as
Probab=97.32 E-value=0.00031 Score=67.21 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=40.2
Q ss_pred hhhcCCCCcEEEEEEeC---CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~---~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
.+||+|+||.||+|... ++..||||++..... ..++.+|+++|.+++|..
T Consensus 7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~-------~~~~~~E~~~l~~l~h~n 59 (317)
T cd07867 7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGI-------SMSACREIALLRELKHPN 59 (317)
T ss_pred eEeccCCCeeEEEEEecCCCccceEEEEEecCCCC-------cHHHHHHHHHHHhCCCCC
Confidence 57999999999999975 346899999853221 357889999999999963
No 143
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=97.32 E-value=0.00032 Score=69.79 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=40.6
Q ss_pred hhhcCCCCcEEEEEEeC------CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc-cC
Q 013931 376 NVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI-SK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~------~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~-H~ 431 (433)
+.||+|+||.||+|... .+..||||+++.... ....+.|.+|+++|.++. |+
T Consensus 43 ~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~----~~~~~~~~~E~~~l~~l~~H~ 101 (401)
T cd05107 43 RTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTAR----SSEKQALMSELKIMSHLGPHL 101 (401)
T ss_pred hhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCC----hhHHHHHHHHHHHHHhcCCCC
Confidence 78999999999999863 346799999964322 222457999999999997 86
No 144
>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.
Probab=97.32 E-value=0.00022 Score=68.95 Aligned_cols=55 Identities=13% Similarity=0.050 Sum_probs=43.2
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +|+.||||++....... ....++|.+|+++|..++|+.
T Consensus 7 ~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~h~~ 62 (333)
T cd05600 7 TQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFK--LNEVRHVLTERDILTTTKSEW 62 (333)
T ss_pred EEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhh--hhHHHHHHHHHHHHHhCCCCC
Confidence 67999999999999985 58999999996432211 123567999999999999863
No 145
>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa
Probab=97.32 E-value=0.00022 Score=66.21 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=42.2
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|...++..+|||.+... .....+|.+|++++.+++|.
T Consensus 12 ~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~------~~~~~~~~~e~~~l~~l~~~ 61 (260)
T cd05073 12 KKLGAGQFGEVWMATYNKHTKVAVKTMKPG------SMSVEAFLAEANVMKTLQHD 61 (260)
T ss_pred eEecCccceEEEEEEecCCccEEEEecCCC------hhHHHHHHHHHHHHHhcCCC
Confidence 789999999999999888889999988532 12246899999999999986
No 146
>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4. Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.
Probab=97.31 E-value=0.0004 Score=64.54 Aligned_cols=56 Identities=25% Similarity=0.302 Sum_probs=44.1
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCC-CchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKD-WPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~-~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|...+|+.+|||.+....... ........|.+|+++|.+++|.
T Consensus 6 ~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~ 62 (265)
T cd06631 6 EVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHV 62 (265)
T ss_pred ceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCC
Confidence 5799999999999998899999999986433221 1123346799999999999996
No 147
>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as
Probab=97.31 E-value=0.00037 Score=65.78 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=42.6
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++... +++.||||++....... ....+.+.+|+.++.+++|++
T Consensus 6 ~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~E~~il~~l~~~~ 61 (285)
T cd05630 6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK--RKGESMALNEKQILEKVNSRF 61 (285)
T ss_pred EEeecCCCeEEEEEEEcCCCceEEEEEEehhhccc--hHHHHHHHHHHHHHHhCCCCC
Confidence 67999999999998874 68899999986432221 223456889999999999864
No 148
>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk
Probab=97.31 E-value=0.00034 Score=64.66 Aligned_cols=50 Identities=22% Similarity=0.261 Sum_probs=42.5
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|.. .|+.||||++..... ..++|.+|+.++.+++|.+
T Consensus 12 ~~ig~g~~g~v~~~~~-~~~~v~iK~~~~~~~------~~~~~~~e~~~l~~l~~~~ 61 (256)
T cd05039 12 ATIGKGEFGDVMLGDY-RGQKVAVKCLKDDST------AAQAFLAEASVMTTLRHPN 61 (256)
T ss_pred eeeecCCCceEEEEEe-cCcEEEEEEeccchh------HHHHHHHHHHHHHhcCCcc
Confidence 7899999999999997 689999999963221 3578999999999999975
No 149
>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p
Probab=97.30 E-value=0.00046 Score=64.83 Aligned_cols=52 Identities=21% Similarity=0.178 Sum_probs=42.5
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|.. .+++.||||++.... .....++|.+|+++|.+++|.
T Consensus 7 ~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~----~~~~~~~~~~E~~~l~~l~h~ 59 (279)
T cd06619 7 EILGHGNGGTVYKAYHLLTRRILAVKVIPLDI----TVELQKQIMSELEILYKCDSP 59 (279)
T ss_pred eeeccCCCeEEEEEEEcCCCcEEEEEEEecCC----ChHHHHHHHHHHHHHHhCCCC
Confidence 6799999999999985 578999999986422 233457899999999999986
No 150
>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl. Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor
Probab=97.30 E-value=0.00046 Score=64.34 Aligned_cols=54 Identities=17% Similarity=0.324 Sum_probs=41.8
Q ss_pred hhhcCCCCcEEEEEEeCCC-C--EEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSNG-V--EIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g-~--~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|+..+. + .||||.++.... +.....+|..|+++|..++|.+
T Consensus 5 ~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~---~~~~~~~~~~E~~~l~~l~h~~ 61 (272)
T cd05075 5 KTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAIC---TRSEMEDFLSEAVCMKEFDHPN 61 (272)
T ss_pred cccCcccCceEEEeEEccCCCeeeEEEEecccCcC---CHHHHHHHHHHHHHHHhCCCCC
Confidence 6799999999999998543 3 589998864321 2333578999999999999974
No 151
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=97.30 E-value=0.00018 Score=70.81 Aligned_cols=61 Identities=20% Similarity=0.122 Sum_probs=45.5
Q ss_pred HHhhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 370 ACEDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 370 at~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
..++|. +.||+|+||.||++... +|+.||||++....... ......|.+|+++|..++|.+
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~il~~~~h~~ 104 (370)
T cd05596 41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIK--RSDSAFFWEERDIMAHANSEW 104 (370)
T ss_pred CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh--hhhHHHHHHHHHHHHhCCCCC
Confidence 345565 78999999999999874 68899999996322111 122456889999999999974
No 152
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=97.29 E-value=0.00048 Score=60.95 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=27.1
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeec
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVA 405 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~ 405 (433)
..||+|+||.||+|...+|+.||||.++..
T Consensus 3 ~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~ 32 (190)
T cd05145 3 GCISTGKEANVYHARTGDGEELAVKIYKTS 32 (190)
T ss_pred ceeecCCCcEEEEEEcCCCCEEEEEEEEcC
Confidence 468999999999999888999999999754
No 153
>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1. Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst
Probab=97.27 E-value=0.00059 Score=66.04 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=44.2
Q ss_pred hhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++|. +.||+|+||.||++... +|+.+|+|.+..... .....+|.+|+++|.+++|.
T Consensus 5 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~----~~~~~~~~~E~~~l~~l~h~ 63 (333)
T cd06650 5 DDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIK----PAIRNQIIRELQVLHECNSP 63 (333)
T ss_pred hhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccC----HHHHHHHHHHHHHHHHCCCC
Confidence 3444 78999999999999885 688899998864321 23356799999999999996
No 154
>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos
Probab=97.27 E-value=0.00037 Score=67.33 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=42.3
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|.- .+|+.||||++...... .....+|.+|+++|.+++|+
T Consensus 6 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~hp 59 (338)
T cd07859 6 EVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEH---VSDATRILREIKLLRLLRHP 59 (338)
T ss_pred EEEeecCCeEEEEEEECCCCCEEEEEEechhhcc---chhHHHHHHHHHHHHhCCCC
Confidence 6799999999999986 47899999999642211 22246799999999999997
No 155
>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome. Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds
Probab=97.27 E-value=0.00033 Score=64.84 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=42.4
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
..||+|+||.||+|...++..||||.+..... ...+|.+|+.++.+++|+.
T Consensus 10 ~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~------~~~~~~~e~~~l~~l~h~~ 60 (256)
T cd05113 10 KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM------SEDEFIEEAKVMMKLSHEK 60 (256)
T ss_pred eEecCcccceEEEEEecCCCcEEEEEcCCCcc------cHHHHHHHHHHHhcCCCCC
Confidence 67999999999999987777899999863221 2467999999999999973
No 156
>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2. Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve
Probab=97.26 E-value=0.00048 Score=64.59 Aligned_cols=52 Identities=23% Similarity=0.345 Sum_probs=41.0
Q ss_pred hhhcCCCCcEEEEEEe-CCCC----EEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGV----EIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~----~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++||+|+||+||+|.. ++|+ .||||+++... .....++|.+|+.++..+.|.
T Consensus 13 ~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~----~~~~~~~~~~e~~~l~~~~~~ 69 (279)
T cd05109 13 KVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENT----SPKANKEILDEAYVMAGVGSP 69 (279)
T ss_pred eecCCCCCceEEEEEEecCCCccceEEEEEEecCCC----CHHHHHHHHHHHHHHHhcCCC
Confidence 7899999999999985 4665 37999986322 234467899999999999885
No 157
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=97.26 E-value=0.00024 Score=72.76 Aligned_cols=57 Identities=21% Similarity=0.167 Sum_probs=44.3
Q ss_pred hhhh--hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++|. +.||+|+||+||+|.. .+|+.||||++..... +......+.+|+..|..++|.
T Consensus 32 ~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~---~~~~~~~~~~Ei~~l~~~~h~ 91 (496)
T PTZ00283 32 KKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGM---SEADKNRAQAEVCCLLNCDFF 91 (496)
T ss_pred CCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccC---CHHHHHHHHHHHHHHhcCCCC
Confidence 3444 7899999999999975 5799999999964321 233456799999999988875
No 158
>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho
Probab=97.26 E-value=0.0005 Score=63.88 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=43.5
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|.. .+|..||+|.+...............|.+|++++.+++|.
T Consensus 8 ~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~ 64 (264)
T cd06653 8 KLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHD 64 (264)
T ss_pred eeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCC
Confidence 7899999999999986 4689999999853221112233457899999999999996
No 159
>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the
Probab=97.26 E-value=0.00027 Score=68.77 Aligned_cols=54 Identities=19% Similarity=0.119 Sum_probs=42.9
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||+||++... +|+.||||++....... ......|.+|+++|..++|+
T Consensus 7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~ 61 (350)
T cd05573 7 KVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIK--RNQIAHVRAERDILADADSP 61 (350)
T ss_pred EEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhh--ccHHHHHHHHHHHHHhcCCC
Confidence 67999999999999975 68999999996432111 12356799999999999986
No 160
>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1. Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25
Probab=97.25 E-value=0.0007 Score=63.40 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=41.9
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|... +|+.||||.+..... .....+|.+|++++.+++|+
T Consensus 10 ~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~e~~~l~~l~h~ 62 (277)
T cd06642 10 ERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEA----EDEIEDIQQEITVLSQCDSP 62 (277)
T ss_pred HHhcCCCCeeEEEEEEcCCCeEEEEEEeccccc----hHHHHHHHHHHHHHHcCCCC
Confidence 77999999999999864 578899998853221 22356899999999999996
No 161
>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows
Probab=97.25 E-value=0.00051 Score=63.53 Aligned_cols=50 Identities=18% Similarity=0.253 Sum_probs=41.8
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|...++..+|||.+..... ...+|.+|++++.+++|.
T Consensus 10 ~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~------~~~~~~~e~~~l~~l~~~ 59 (256)
T cd05059 10 KELGSGQFGVVHLGKWRGKIDVAIKMIREGAM------SEDDFIEEAKVMMKLSHP 59 (256)
T ss_pred hhhccCCCceEEEeEecCCccEEEEEeccCCC------CHHHHHHHHHHHHhCCCC
Confidence 78999999999999988778899999853221 146799999999999996
No 162
>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2. Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst
Probab=97.25 E-value=0.00052 Score=66.35 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=43.1
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++... +|..||+|.+.... ......+|.+|+++|.+++|..
T Consensus 11 ~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~----~~~~~~~~~~E~~~l~~l~h~~ 64 (331)
T cd06649 11 SELGAGNGGVVTKVQHKPSGLIMARKLIHLEI----KPAIRNQIIRELQVLHECNSPY 64 (331)
T ss_pred EeecCCCCEEEEEEEECCCCcEEEEEEeeccc----CHHHHHHHHHHHHHHHHCCCCC
Confidence 68999999999999975 68889999986422 1333568999999999999974
No 163
>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI
Probab=97.25 E-value=0.00037 Score=65.52 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=43.1
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +|+.||||++...... ....+.|.+|+++|.+++|.+
T Consensus 7 ~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~ 61 (286)
T cd07846 7 GLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDD---KMVKKIAMREIRMLKQLRHEN 61 (286)
T ss_pred eeeccCCCeEEEEEEECCCCCEEEEEeHhhccCc---chhhHHHHHHHHHHHhcCCcc
Confidence 78999999999999985 5899999998542221 223567999999999999974
No 164
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.24 E-value=0.00041 Score=74.66 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=43.9
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
++||+|+||.||+|.-. .|+.||||++...... .....+.|.+|++++++++|+.
T Consensus 8 ~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~--~e~~~~rflrEi~ILs~L~HPN 63 (932)
T PRK13184 8 RLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSE--NPLLKKRFLREAKIAADLIHPG 63 (932)
T ss_pred EEEecCCCEEEEEEEECCCCcEEEEEEECccccc--CHHHHHHHHHHHHHHHhCCCcC
Confidence 68999999999999864 5899999999643222 1334567999999999999973
No 165
>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer
Probab=97.24 E-value=0.00062 Score=63.88 Aligned_cols=52 Identities=21% Similarity=0.429 Sum_probs=41.1
Q ss_pred hhhcCCCCcEEEEEEeCC------CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~------g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|.... +..||||++.... ......+|.+|+++|.+++|.
T Consensus 11 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~----~~~~~~~~~~ei~~l~~l~h~ 68 (283)
T cd05048 11 EELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENA----EPKVQQEFRQEAELMSDLQHP 68 (283)
T ss_pred hcccCccCCcEEEEEEecCCCCcceeeEEEEecccCC----CHHHHHHHHHHHHHHHhcCCc
Confidence 789999999999998743 2579999986322 133456799999999999986
No 166
>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta
Probab=97.24 E-value=0.0004 Score=65.56 Aligned_cols=58 Identities=17% Similarity=0.312 Sum_probs=43.0
Q ss_pred Hhhhh--hhhcCCCCcEEEEEEeC------CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 371 CEDFS--NVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 371 t~~f~--~~iG~G~fG~VYkg~l~------~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
++.|. +.||+|+||.||+|... .+..||||.+.... ......+|.+|+.++..++|..
T Consensus 5 ~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~~e~~~l~~l~~~~ 70 (288)
T cd05061 5 REKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESA----SLRERIEFLNEASVMKGFTCHH 70 (288)
T ss_pred HHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcC----CHHHHHHHHHHHHHHHhCCCCC
Confidence 34555 78999999999999763 24579999885322 1223457999999999999863
No 167
>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a
Probab=97.24 E-value=0.00047 Score=64.92 Aligned_cols=53 Identities=21% Similarity=0.247 Sum_probs=42.8
Q ss_pred hhhcCCCCcEEEEEEe-----CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-----SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-----~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||.+.+ .++..||||+++.... .....+|.+|++++.+++|.+
T Consensus 10 ~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~----~~~~~~~~~e~~~l~~l~h~~ 67 (284)
T cd05079 10 RDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESG----GNHIADLKKEIEILRNLYHEN 67 (284)
T ss_pred eecCCCCceeEEEEEEccCCCCccceEEEEEcCcccc----HHHHHHHHHHHHHHHhCCCCC
Confidence 6799999999999985 3578899999864322 233568999999999999975
No 168
>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase
Probab=97.23 E-value=0.00034 Score=67.71 Aligned_cols=56 Identities=16% Similarity=0.273 Sum_probs=44.1
Q ss_pred hhhh--hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++|. +.||+|+||.||+|.- .+|+.||||+++.... ......+..|+.++.+++|+
T Consensus 5 ~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~E~~~l~~l~h~ 63 (336)
T cd07849 5 PRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEH----QTFCQRTLREIKILRRFKHE 63 (336)
T ss_pred cceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEeccccc----chhHHHHHHHHHHHHhCCCC
Confidence 4455 7899999999999985 5789999999964222 22356789999999999986
No 169
>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including
Probab=97.22 E-value=0.00045 Score=65.42 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=40.8
Q ss_pred hhhcCCCCcEEEEEEeCC-------------C--CEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSN-------------G--VEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~-------------g--~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++...+ + ..||||++..... .....+|.+|+++|.+++|.+
T Consensus 11 ~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~~ei~~l~~l~h~~ 78 (295)
T cd05097 11 EKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVT----KTARNDFLKEIKIMSRLKNPN 78 (295)
T ss_pred hccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCC----HHHHHHHHHHHHHHHhCCCCC
Confidence 789999999999987642 2 2489999864322 333567999999999999985
No 170
>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh
Probab=97.22 E-value=0.00049 Score=64.46 Aligned_cols=59 Identities=19% Similarity=0.323 Sum_probs=44.4
Q ss_pred HHhhhh--hhhcCCCCcEEEEEEeC------CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 370 ACEDFS--NVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 370 at~~f~--~~iG~G~fG~VYkg~l~------~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
++++|. +.||+|+||.||+|... .+..||||++..... .....+|.+|+.++.+++|..
T Consensus 4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~----~~~~~~~~~e~~~l~~l~~~~ 70 (277)
T cd05062 4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAAS----MRERIEFLNEASVMKEFNCHH 70 (277)
T ss_pred cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCC----HHHHHHHHHHHHHHHhCCCCC
Confidence 345666 88999999999998753 356799999853221 223567999999999999873
No 171
>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti
Probab=97.22 E-value=0.00063 Score=63.77 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=44.2
Q ss_pred hhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++|. ..||+|+||.||+|... +++.||+|.+.... .....+|.+|++++.+++|+
T Consensus 5 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~-----~~~~~~~~~e~~~l~~l~h~ 62 (280)
T cd06611 5 DIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIES-----EEELEDFMVEIDILSECKHP 62 (280)
T ss_pred hHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCC-----HHHHHHHHHHHHHHHhCCCC
Confidence 3454 77999999999999984 68899999986322 22356899999999999996
No 172
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.21 E-value=0.00053 Score=58.36 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=41.8
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
++||+|.||+||||.-. .++.||.|+++.....+ .-...-.+||-+|.++.|+.
T Consensus 8 ekigegtygtvfkarn~~t~eivalkrvrldddde---gvpssalreicllkelkhkn 62 (292)
T KOG0662|consen 8 EKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDE---GVPSSALREICLLKELKHKN 62 (292)
T ss_pred HhhcCCcceeeEecccCCccceEEEEEEeccCCCC---CCcHHHHHHHHHHHHhhhcc
Confidence 67999999999999864 57889999997543322 11356789999999999984
No 173
>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an
Probab=97.21 E-value=0.00032 Score=69.22 Aligned_cols=54 Identities=9% Similarity=0.044 Sum_probs=42.2
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++||+|+||.||+|.- .+++.||||++...... .......+.+|+++|.+++|+
T Consensus 7 ~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~--~~~~~~~~~~E~~il~~~~h~ 61 (382)
T cd05625 7 KTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVL--LRNQVAHVKAERDILAEADNE 61 (382)
T ss_pred EEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhh--hHHHHHHHHHHHHHHHhCCCC
Confidence 7899999999999986 46889999999632211 122356799999999999996
No 174
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=97.21 E-value=0.0008 Score=64.18 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=43.7
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +|+.||||++...... .....++|.+|++++.+++|+.
T Consensus 21 ~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~--~~~~~~~~~~Ei~~l~~l~h~n 76 (307)
T cd06607 21 REIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQ--SNEKWQDIIKEVRFLQQLRHPN 76 (307)
T ss_pred eeecCCCCeEEEEEEEcCCCcEEEEEEEeccccC--cHHHHHHHHHHHHHHHhCCCCC
Confidence 77999999999999874 6899999998543222 1333567999999999999973
No 175
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=97.21 E-value=0.00037 Score=67.72 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=42.0
Q ss_pred hhhcCCCCcEEEEEEeCC--CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSN--GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~--g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|...+ +..||||++....... ......|.+|+++|..++|+.
T Consensus 36 ~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~ 92 (340)
T PTZ00426 36 RTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIK--QKQVDHVFSERKILNYINHPF 92 (340)
T ss_pred EEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhh--hhhHHHHHHHHHHHHhCCCCC
Confidence 789999999999998643 3689999986432111 223567999999999999974
No 176
>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=97.20 E-value=0.00051 Score=63.66 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=42.3
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
..||+|+||.||+|...++..||+|++..... ..+.|.+|++++.+++|..
T Consensus 12 ~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~------~~~~~~~E~~~l~~l~h~~ 62 (260)
T cd05069 12 VKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTM------MPEAFLQEAQIMKKLRHDK 62 (260)
T ss_pred eeecCcCCCeEEEEEEcCCceEEEEEcccCCc------cHHHHHHHHHHHHhCCCCC
Confidence 67999999999999998888899999853221 2467999999999999963
No 177
>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)
Probab=97.20 E-value=0.00074 Score=63.09 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=43.1
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||.|+||.||+|... +|+.||||++..... .....+|.+|++++.+++|.+
T Consensus 7 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~----~~~~~~~~~e~~~l~~l~h~~ 60 (274)
T cd06609 7 ECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEA----EDEIEDIQQEIQFLSQCRSPY 60 (274)
T ss_pred hhhcCCCCeEEEEEEECCCCeEEEEEEeecccc----chHHHHHHHHHHHHHHcCCCC
Confidence 67999999999999975 688999999864321 223567999999999999975
No 178
>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign
Probab=97.20 E-value=0.00068 Score=63.69 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=41.7
Q ss_pred hhhcCCCCcEEEEEEe-----CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-----SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-----~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||+||.+.+ .+++.||||.+..... ......|.+|+++|.+++|..
T Consensus 10 ~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~E~~~l~~l~h~~ 67 (283)
T cd05080 10 RVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECG----QQNTSGWKKEINILKTLYHEN 67 (283)
T ss_pred eecccCCCcEEEEeeEccccCCCCceEEEEEeccccC----hHHHHHHHHHHHHHHhCCCCC
Confidence 6799999999987654 4688999999864321 233578999999999999974
No 179
>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t
Probab=97.20 E-value=0.00059 Score=63.21 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=44.3
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++.. .+|+.||||.+.............+.|.+|++++.+++|..
T Consensus 8 ~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~ 65 (263)
T cd06625 8 KLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHER 65 (263)
T ss_pred ceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCC
Confidence 7899999999999986 46899999998644322222233467999999999999963
No 180
>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut
Probab=97.20 E-value=0.00058 Score=63.98 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=42.3
Q ss_pred hhhcCCCCcEEEEEEeC-----CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-----NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-----~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|++. ++..||||.+...... ....+|.+|++++.++.|+
T Consensus 10 ~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~----~~~~~~~~ei~~l~~l~~~ 66 (284)
T cd05038 10 KQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE----QHRSDFEREIEILRTLDHE 66 (284)
T ss_pred eeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccch----HHHHHHHHHHHHHHhCCCC
Confidence 67999999999999974 3688999999643221 2367899999999999986
No 181
>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is
Probab=97.19 E-value=0.00059 Score=64.62 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=44.2
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +|+.||||++...............+..|++++.+++|..
T Consensus 6 ~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~ 63 (298)
T cd07841 6 KKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPN 63 (298)
T ss_pred eeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCC
Confidence 67999999999999974 6899999999754433211223567889999999999973
No 182
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=97.19 E-value=0.00042 Score=69.55 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=42.2
Q ss_pred hhhhhcCCCCcEEEEEEeC---CCC--EEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 374 FSNVIGSSPIGTVYKGTLS---NGV--EIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 374 f~~~iG~G~fG~VYkg~l~---~g~--~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
..++||+|-||.||+|++- .|. .||||.-+... ++.....|.+|.-+|.+++|.
T Consensus 393 l~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~----t~d~tekflqEa~iMrnfdHp 451 (974)
T KOG4257|consen 393 LKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDC----TPDDTEKFLQEASIMRNFDHP 451 (974)
T ss_pred HHHhhcCCcccceeeeEecccccCcceeeeeehhccCC----ChhhHHHHHHHHHHHHhCCCc
Confidence 3489999999999999994 344 37888876433 344467799999999999996
No 183
>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity
Probab=97.19 E-value=0.00069 Score=62.80 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=43.3
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||++... +++.||||++..... ....++|.+|++++.+++|.
T Consensus 7 ~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~----~~~~~~~~~e~~~l~~~~~~ 59 (265)
T cd06605 7 GELGAGNSGVVSKVLHRPTGKIMAVKTIRLEIN----EAIQKQILRELDILHKCNSP 59 (265)
T ss_pred HHhcCCCCeEEEEEEEcCCCcEEEEEEEecccC----hHHHHHHHHHHHHHHHCCCC
Confidence 78999999999999985 689999999865332 23467899999999999886
No 184
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=97.18 E-value=0.00019 Score=67.54 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=49.4
Q ss_pred CCHHHHHHHHhhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc-ccC
Q 013931 362 LKRSELEAACEDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL-ISK 431 (433)
Q Consensus 362 ~~~~el~~at~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l-~H~ 431 (433)
+.++++..++++|. ..||+|+||.||++... +|+.+|||.++.... ...++.+|++++.++ +|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~------~~~~~~~e~~~l~~l~~h~ 75 (286)
T cd06638 8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHD------IDEEIEAEYNILKALSDHP 75 (286)
T ss_pred EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccc------hHHHHHHHHHHHHHHhcCC
Confidence 44556666777777 88999999999999874 688999998853211 146789999999998 586
No 185
>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess
Probab=97.18 E-value=0.00039 Score=65.65 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=44.1
Q ss_pred Hhhhh--hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 371 CEDFS--NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 371 t~~f~--~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.+|. +.||+|+||.||+|.. .+|+.||||++......+ ....+.+|+++|..++|+
T Consensus 4 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~----~~~~~~~e~~~l~~l~h~ 63 (291)
T cd07870 4 ATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEG----VPFTAIREASLLKGLKHA 63 (291)
T ss_pred cceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCC----CcHHHHHHHHHHHhcCCC
Confidence 34554 7899999999999986 468999999986433222 135788999999999996
No 186
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.18 E-value=0.00017 Score=65.01 Aligned_cols=98 Identities=19% Similarity=0.136 Sum_probs=61.3
Q ss_pred CEEEEEecCCCCcccCcccccCCCCCcEEEeeCC--cccccCccccCCCCcCceeecccccCCCCCchh---ccCCCCCc
Q 013931 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNN--SFSGIIPEGFGELEELEVLDFGHNNFSGPLPND---LGINHSLT 148 (433)
Q Consensus 74 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N--~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~---~~~l~~L~ 148 (433)
.++.|++.+..++.. ..+..|++|++|.++.| .+.+.++.....+++|++|+|++|++. ++.. +..+.+|.
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLK 119 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcchh
Confidence 456666666665521 23566778888888888 666666666666788888888888876 2333 34455677
Q ss_pred EEEccCCCCcccCc---hhhhCCCCCCEEE
Q 013931 149 ILLLDNNDFVGSLS---PEIYKLQVLSESQ 175 (433)
Q Consensus 149 ~L~l~~N~l~~~~p---~~l~~l~~L~~L~ 175 (433)
.|++.+|..+..-- ..|.-+++|++|+
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 77777776654111 1344566666654
No 187
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=97.17 E-value=0.0012 Score=62.44 Aligned_cols=62 Identities=26% Similarity=0.252 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHhhhhhhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 361 KLKRSELEAACEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 361 ~~~~~el~~at~~f~~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
.++..||+.. +.||+|..|+|||+... .++.+|.|.+... ..+...+|..+|++++.+++|.
T Consensus 75 ~i~~~dle~~-----~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~----~~~~~~~Qi~rEl~il~~~~sp 137 (364)
T KOG0581|consen 75 GISLSDLERL-----GVLGSGNGGTVYKVRHKPTGKIYALKVILLN----IDPALQKQILRELEILRSCQSP 137 (364)
T ss_pred ccCHHHhhhh-----hhcccCCCcEEEEEEEcCCCeEEEEEeeccc----CCHHHHHHHHHHHHHHhhCCCC
Confidence 4777888877 88999999999999984 6788899999532 2245578999999999988764
No 188
>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=97.17 E-value=0.00093 Score=62.84 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=42.4
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||++... +|+.||+|.+.... ......+|.+|++++.+++|.
T Consensus 7 ~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~----~~~~~~~~~~e~~~l~~~~~~ 59 (286)
T cd06622 7 DELGKGNYGSVYKVLHRPTGVTMAMKEIRLEL----DESKFNQIIMELDILHKAVSP 59 (286)
T ss_pred hhhcccCCeEEEEEEEcCCCcEEEEEEeeccc----CHHHHHHHHHHHHHHHhcCCC
Confidence 78999999999999985 78999999986321 122346899999999999986
No 189
>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates
Probab=97.17 E-value=0.00091 Score=62.99 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=41.6
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc-cC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI-SK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~-H~ 431 (433)
..||+|+||.||++... +|+.||||++..... .....+|.+|+.++.++. |.
T Consensus 10 ~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~----~~~~~~~~~e~~~l~~~~~~~ 63 (288)
T cd06616 10 GEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVD----EKEQKRLLMDLDVVMRSSDCP 63 (288)
T ss_pred HHhCCCCceEEEEEEECCCCCEEEEEEehhccC----hHHHHHHHHHHHHHHHhcCCC
Confidence 78999999999998874 689999999864322 233578999999999986 75
No 190
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.16 E-value=0.00028 Score=63.63 Aligned_cols=92 Identities=20% Similarity=0.264 Sum_probs=68.9
Q ss_pred CcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccc--cCCCCCchhccCCCCCcEEEccCCCCcccCc--hh
Q 013931 89 LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN--NFSGPLPNDLGINHSLTILLLDNNDFVGSLS--PE 164 (433)
Q Consensus 89 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N--~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~ 164 (433)
+....-.+..|+.|.+.+..++. + ..+..|++|+.|+++.| ++.+.++-....+++|++|++++|++. .+- ..
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-DLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-cccccch
Confidence 44445556677777777777762 2 24678899999999999 667777766677799999999999987 221 13
Q ss_pred hhCCCCCCEEEccCCCCCC
Q 013931 165 IYKLQVLSESQVDEGQLSS 183 (433)
Q Consensus 165 l~~l~~L~~L~l~~n~l~~ 183 (433)
+..+.+|..|++.+|..+.
T Consensus 112 l~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhcchhhhhcccCCccc
Confidence 5677888899999988775
No 191
>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains. Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc
Probab=97.16 E-value=0.00075 Score=62.17 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=43.9
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +|+.||+|.+..... ......+|.+|++++.+++|+.
T Consensus 6 ~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~~~e~~~l~~l~h~~ 60 (256)
T cd08529 6 NKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKM---NRREREEAIDEARVLAKLDSSY 60 (256)
T ss_pred EEecCCCCeEEEEEEEcCCCcEEEEEEeehhhC---CHHHHHHHHHHHHHHHhcCCCC
Confidence 68999999999999874 689999999864221 1334678999999999999974
No 192
>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex
Probab=97.16 E-value=0.00056 Score=64.24 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=42.8
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +|+.||||++...... ......|.+|++++.+++|..
T Consensus 6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~E~~~l~~l~h~~ 60 (284)
T cd07860 6 EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTET---EGVPSTAIREISLLKELNHPN 60 (284)
T ss_pred eeecCCCceEEEEEEECCCCCEEEEEEccccccc---cccchHHHHHHHHHHhcCCCC
Confidence 67999999999999874 6899999998643221 222467999999999999973
No 193
>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase. Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor
Probab=97.16 E-value=0.00044 Score=66.75 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=43.1
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++... +|+.||||+++..... .....+.|..|++++..++|..
T Consensus 7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~~~e~~i~~~~~~~~ 62 (330)
T cd05601 7 SLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLL--AQETVSFFEEERDILSISNSPW 62 (330)
T ss_pred EEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhh--hhhHHHHHHHHHHHHHhCCCCC
Confidence 78999999999999874 7899999999743221 1233567999999999998863
No 194
>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85. Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.
Probab=97.15 E-value=0.00065 Score=63.73 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=42.3
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|+.. +|+.||||++....... ....+.+|++++.+++|+
T Consensus 6 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~----~~~~~~~E~~~l~~l~h~ 58 (284)
T cd07836 6 EKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEG----TPSTAIREISLMKELKHE 58 (284)
T ss_pred eeeccCCceEEEEEEECCCCeEEEEEEeccccccc----chHHHHHHHHHHHhhcCC
Confidence 68999999999999985 68999999996433221 246788999999999996
No 195
>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto
Probab=97.14 E-value=0.00044 Score=67.07 Aligned_cols=52 Identities=10% Similarity=0.076 Sum_probs=39.9
Q ss_pred hhhcCCCCcEEEEEEeC------CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc-ccC
Q 013931 376 NVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL-ISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~------~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l-~H~ 431 (433)
+.||+|+||.||+|... .++.||||++..... ......+..|++++.++ +|+
T Consensus 13 ~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~----~~~~~~~~~E~~~~~~l~~h~ 71 (337)
T cd05054 13 KPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGAT----ASEYKALMTELKILIHIGHHL 71 (337)
T ss_pred cccccCcCceEEeccccccccccccceeeeeeccCCCC----HHHHHHHHHHHHHHHhhccCc
Confidence 78999999999999752 347899999964322 22346788999999999 675
No 196
>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase. Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1
Probab=97.14 E-value=0.00065 Score=62.97 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=42.7
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||.|+||.||+|.. .++..+|||++..... ....++|.+|+++|..++|..
T Consensus 7 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~----~~~~~~~~~e~~~l~~l~~~~ 60 (267)
T cd06610 7 EVIGVGATAVVYAAICLPNNEKVAIKRIDLEKC----QTSVDELRKEVQAMSQCNHPN 60 (267)
T ss_pred eeecCCCCeEEEEEEEcCCCcEEEEEEeccCCc----chHHHHHHHHHHHHHhcCCCC
Confidence 7799999999999996 4688999999863222 123678999999999999873
No 197
>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase. Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.
Probab=97.14 E-value=0.00071 Score=63.96 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=42.2
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||.|+||.||+|+.. +|+.||+|++.... ....++|.+|++++.++.|+
T Consensus 18 ~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~-----~~~~~~~~~e~~~l~~l~h~ 69 (292)
T cd06644 18 GELGDGAFGKVYKAKNKETGALAAAKVIETKS-----EEELEDYMVEIEILATCNHP 69 (292)
T ss_pred heecCCCCeEEEEEEECCCCceEEEEEeccCC-----HHHHHHHHHHHHHHHhCCCC
Confidence 67999999999999985 48899999985322 33467899999999999996
No 198
>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr
Probab=97.14 E-value=0.00064 Score=63.33 Aligned_cols=52 Identities=19% Similarity=0.353 Sum_probs=41.3
Q ss_pred hhhcCCCCcEEEEEEeCC-C---CEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLSN-G---VEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~-g---~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|+... | ..||||++... .+.....+|..|++++.+++|.
T Consensus 10 ~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~----~~~~~~~~~~~e~~~l~~l~h~ 65 (269)
T cd05065 10 EVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSG----YTEKQRRDFLSEASIMGQFDHP 65 (269)
T ss_pred eEecCCCCCeEEEEEEecCCCCceeEEEEEcCCC----CCHHHHHHHHHHHHHHHhCCCc
Confidence 789999999999999853 3 36999998632 1233457899999999999987
No 199
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.14 E-value=0.00012 Score=68.39 Aligned_cols=108 Identities=18% Similarity=0.265 Sum_probs=49.7
Q ss_pred CEEEEEecCCCCcc----cCcccccCCCCCcEEEeeCCccccc----CccccCCCCcCceeecccccCCCCCchhc----
Q 013931 74 KVVNLNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGPLPNDL---- 141 (433)
Q Consensus 74 ~l~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~p~~~---- 141 (433)
.+..+.++.|.|.. .+...+..+++|++|||+.|.|+.. +...+..+++|+.|+++++.+...-...|
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 34455555554431 1122345555555555555555421 22334445555555555555542211111
Q ss_pred -cCCCCCcEEEccCCCCccc----CchhhhCCCCCCEEEccCCCC
Q 013931 142 -GINHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQL 181 (433)
Q Consensus 142 -~~l~~L~~L~l~~N~l~~~----~p~~l~~l~~L~~L~l~~n~l 181 (433)
...++|+.|.|.+|.++.. +-..+...+.|..|++++|.+
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1234555555555555421 112233455555566666655
No 200
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=3.4e-05 Score=69.96 Aligned_cols=97 Identities=22% Similarity=0.203 Sum_probs=63.9
Q ss_pred CEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCch--hccCCCCCcEEE
Q 013931 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN--DLGINHSLTILL 151 (433)
Q Consensus 74 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~--~~~~l~~L~~L~ 151 (433)
++..|++-++.|..+ ....+|+.|++|.|+-|+|+..- .+..+++|+.|+|..|.|. .+-+ -+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence 455566666665522 12456777888888888887333 3667788888888888776 3332 356778888888
Q ss_pred ccCCCCcccCch-----hhhCCCCCCEEE
Q 013931 152 LDNNDFVGSLSP-----EIYKLQVLSESQ 175 (433)
Q Consensus 152 l~~N~l~~~~p~-----~l~~l~~L~~L~ 175 (433)
|..|.-.|.-+. .+.-|++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 888887765543 355677777665
No 201
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=97.13 E-value=0.00045 Score=67.97 Aligned_cols=60 Identities=18% Similarity=0.127 Sum_probs=44.8
Q ss_pred Hhhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 371 CEDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 371 t~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
.++|. +.||+|+||.||++... +++.+|+|.+....... ......|.+|++++..++|+.
T Consensus 42 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~i~~~~~hp~ 104 (370)
T cd05621 42 AEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIK--RSDSAFFWEERDIMAFANSPW 104 (370)
T ss_pred HHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhhHHHHHHHHHHHHhCCCCC
Confidence 44555 78999999999999975 57899999986322111 122456899999999999974
No 202
>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int
Probab=97.13 E-value=0.00085 Score=62.88 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=41.8
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|.. .+++.||||.+..... ....++|.+|++++.+++|.
T Consensus 10 ~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~----~~~~~~~~~e~~~l~~l~h~ 62 (277)
T cd06641 10 EKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEA----EDEIEDIQQEITVLSQCDSP 62 (277)
T ss_pred eeEeecCCeEEEEEEECCCCcEEEEEEeccccc----hHHHHHHHHHHHHHHhcCCC
Confidence 6799999999999986 4788999998753221 23357899999999999986
No 203
>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein. Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi
Probab=97.12 E-value=0.00079 Score=63.56 Aligned_cols=53 Identities=13% Similarity=0.101 Sum_probs=40.8
Q ss_pred hhhcCCCCcEEEEEEeC------CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~------~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|+.. ....||+|.+..... .....+|.+|++++..++|..
T Consensus 6 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~----~~~~~~~~~E~~~l~~l~h~~ 64 (290)
T cd05045 6 KTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENAS----SSELRDLLSEFNLLKQVNHPH 64 (290)
T ss_pred ccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCC----HHHHHHHHHHHHHHhhCCCCC
Confidence 67999999999999862 335789998853221 233568999999999999973
No 204
>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase. Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down
Probab=97.12 E-value=0.00083 Score=64.13 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=42.1
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++... +|..+|+|.+.... ......++.+|++++.+++|.+
T Consensus 7 ~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~----~~~~~~~~~~E~~~l~~l~h~~ 60 (308)
T cd06615 7 GELGAGNGGVVTKVLHRPSGLIMARKLIHLEI----KPAIRNQIIRELKVLHECNSPY 60 (308)
T ss_pred eeccCCCCeEEEEEEEcCCCeEEEEEEecccc----CHHHHHHHHHHHHHHHhCCCCC
Confidence 78999999999999864 67889999886321 1233567999999999999974
No 205
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=97.12 E-value=0.00043 Score=68.09 Aligned_cols=67 Identities=18% Similarity=0.127 Sum_probs=49.0
Q ss_pred HHHHHHHHhhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 364 RSELEAACEDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 364 ~~el~~at~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
..++....++|. +.||+|+||.||++... +++.+|+|.+....... ....+.|.+|++++..++|.+
T Consensus 35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~--~~~~~~~~~e~~i~~~~~hp~ 104 (371)
T cd05622 35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIK--RSDSAFFWEERDIMAFANSPW 104 (371)
T ss_pred HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhh--hHHHHHHHHHHHHHHhCCCCC
Confidence 344445556776 88999999999999875 67889999985322111 122456899999999999974
No 206
>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the
Probab=97.12 E-value=0.00059 Score=64.39 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=42.2
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +|+.||||.+....... ....+.+|++++.+++|..
T Consensus 11 ~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~----~~~~~~~E~~~l~~l~h~~ 64 (291)
T cd07844 11 DKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEG----APFTAIREASLLKDLKHAN 64 (291)
T ss_pred EEEeecCCeEEEEEEEcCCCcEEEEEEEecccccC----CchhHHHHHHHHhhCCCcc
Confidence 68999999999999975 68999999986433221 1356889999999999973
No 207
>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12
Probab=97.12 E-value=0.00067 Score=65.93 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=44.8
Q ss_pred Hhhhh--hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 371 CEDFS--NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 371 t~~f~--~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
.+.|. +.||+|+||.||+|.. .+|+.||||++..... .......+.+|+++|.+++|+.
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~~ 75 (343)
T cd07880 14 PDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQ---SELFAKRAYRELRLLKHMKHEN 75 (343)
T ss_pred ccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEeccccc---chHHHHHHHHHHHHHHhcCCCC
Confidence 44454 7899999999999985 4799999999853221 1223457889999999999973
No 208
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=97.11 E-value=0.00028 Score=66.68 Aligned_cols=65 Identities=23% Similarity=0.263 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHhhhh--hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc-ccC
Q 013931 361 KLKRSELEAACEDFS--NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL-ISK 431 (433)
Q Consensus 361 ~~~~~el~~at~~f~--~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l-~H~ 431 (433)
.+++.++..++++|. +.||+|+||.||++.. .+|+.+|||.+.... ....++.+|+.++.++ +|.
T Consensus 11 ~~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~------~~~~~~~~e~~~l~~l~~h~ 79 (291)
T cd06639 11 MLGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS------DVDEEIEAEYNILQSLPNHP 79 (291)
T ss_pred hhhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc------cHHHHHHHHHHHHHHhcCCC
Confidence 356677778888887 8899999999999987 478899999985321 1246788999999988 675
No 209
>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul
Probab=97.11 E-value=0.00077 Score=62.76 Aligned_cols=52 Identities=17% Similarity=0.300 Sum_probs=40.9
Q ss_pred hhhcCCCCcEEEEEEeC----CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~----~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|+.. .+..+|||.++... .....++|.+|+.++.+++|+
T Consensus 10 ~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~----~~~~~~~~~~e~~~l~~l~h~ 65 (267)
T cd05066 10 KVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGY----TEKQRRDFLSEASIMGQFDHP 65 (267)
T ss_pred eeecccCCCceEEEEEecCCCCceEEEEEECCCCC----CHHHHHHHHHHHHHHHhCCCC
Confidence 78999999999999863 23479999986422 133357899999999999997
No 210
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=97.11 E-value=0.00027 Score=71.92 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=43.3
Q ss_pred hhhcCCCCcEEEEEE-eCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~-l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+||||.||+|+ =..|+.||||..+..+... ....-..|+++|.++.|.
T Consensus 19 e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r----~~e~~~~EieilkKLnh~ 71 (732)
T KOG4250|consen 19 ERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLR----PRERWCREIEILKKLNHP 71 (732)
T ss_pred hhhcCCccceeeeecccccccchhHHhhhhhcccc----hHHHHHHHHHHHHHcCch
Confidence 679999999999999 4689999999997655322 256688999999999996
No 211
>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=97.10 E-value=0.0014 Score=61.00 Aligned_cols=52 Identities=19% Similarity=0.232 Sum_probs=42.0
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|+. .+++.||||.++.... .....+.+|+.++..++|..
T Consensus 15 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-----~~~~~~~~e~~~~~~l~h~~ 67 (267)
T cd06645 15 QRIGSGTYGDVYKARNVNTGELAAIKVIKLEPG-----EDFAVVQQEIIMMKDCKHSN 67 (267)
T ss_pred HHhCCCCCeEEEEEEEcCCCcEEEEEEEecCch-----hHHHHHHHHHHHHHhCCCCC
Confidence 7899999999999986 4688999999864322 12456899999999999974
No 212
>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,
Probab=97.10 E-value=0.00049 Score=66.53 Aligned_cols=54 Identities=17% Similarity=0.093 Sum_probs=41.7
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||++... +++.||||.+....... ......|.+|+.++..++|+
T Consensus 7 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~ 61 (331)
T cd05597 7 KVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLK--RAETACFREERDVLVNGDRR 61 (331)
T ss_pred EEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhh--hhhHHHHHHHHHHHHhCCCC
Confidence 67999999999999974 58999999996321111 22245699999999999886
No 213
>PTZ00036 glycogen synthase kinase; Provisional
Probab=97.10 E-value=0.00061 Score=68.68 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=39.1
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
++||+|+||.||+|.. ..|+.||||++... .....+|+.+|.+++|..
T Consensus 72 ~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~---------~~~~~~Ei~il~~l~h~n 120 (440)
T PTZ00036 72 NIIGNGSFGVVYEAICIDTSEKVAIKKVLQD---------PQYKNRELLIMKNLNHIN 120 (440)
T ss_pred EEEEeCCCEEEEEEEECCCCCEEEEEEEecC---------cchHHHHHHHHHhcCCCC
Confidence 7899999999999987 46889999998521 133557999999999974
No 214
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=97.10 E-value=0.00092 Score=63.48 Aligned_cols=52 Identities=17% Similarity=0.255 Sum_probs=42.6
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|.- .+|+.||||.+...... ....|.+|+.++..++|.+
T Consensus 25 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~-----~~~~~~~e~~~l~~~~h~~ 77 (297)
T cd06656 25 EKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQP-----KKELIINEILVMRENKNPN 77 (297)
T ss_pred eeeccCCCeEEEEEEECCCCCEEEEEEEecCccc-----hHHHHHHHHHHHHhCCCCC
Confidence 6799999999999985 57999999999643222 2467999999999999974
No 215
>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U
Probab=97.10 E-value=0.00046 Score=66.68 Aligned_cols=62 Identities=11% Similarity=0.149 Sum_probs=47.6
Q ss_pred HHHHHhhhh--hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 367 LEAACEDFS--NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 367 l~~at~~f~--~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+...+++|. +.||+|+||.||++.- .+|+.||||++...... ....+.+..|++++.+++|.
T Consensus 5 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~hp 69 (328)
T cd07856 5 VFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFST---PVLAKRTYRELKLLKHLRHE 69 (328)
T ss_pred eeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccc---cchhHHHHHHHHHHHhcCCC
Confidence 344667776 8999999999999975 47999999998532211 22356788999999999996
No 216
>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus
Probab=97.10 E-value=0.0005 Score=67.38 Aligned_cols=54 Identities=20% Similarity=0.075 Sum_probs=41.7
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||+||++... +|+.||||.+....... ......+.+|++++.+++|.
T Consensus 7 ~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~E~~il~~~~~~ 61 (363)
T cd05628 7 KVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLE--KEQVGHIRAERDILVEADSL 61 (363)
T ss_pred EEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHH--hhHHHHHHHHHHHHHhCCCC
Confidence 78999999999999764 68999999996422111 22246789999999999886
No 217
>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1. Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.
Probab=97.10 E-value=0.00078 Score=62.28 Aligned_cols=54 Identities=17% Similarity=0.047 Sum_probs=43.4
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||.|+||.||++... +|+.||+|.+...... .....+.+.+|++++.+++|.
T Consensus 6 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~~e~~~l~~l~h~ 60 (258)
T cd05578 6 RVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCV--EKGSVRNVLNERRILQELNHP 60 (258)
T ss_pred EEeccCCCceEEEEEEccCCcEEEEEEEehhhhc--chhHHHHHHHHHHHHHhCCCC
Confidence 68999999999999985 5899999999643221 123467899999999999996
No 218
>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.
Probab=97.09 E-value=0.00047 Score=67.88 Aligned_cols=55 Identities=13% Similarity=0.046 Sum_probs=42.0
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++.-. +|+.||||.+....... ......+.+|+++|.+++|..
T Consensus 7 ~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~E~~il~~l~h~~ 62 (376)
T cd05598 7 KTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLM--RNQAAHVKAERDILAEADNEW 62 (376)
T ss_pred EEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHh--hhhHHHHHHHHHHHHhCCCCC
Confidence 67999999999999864 68899999985322111 122466899999999999963
No 219
>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=97.09 E-value=0.00098 Score=63.47 Aligned_cols=53 Identities=21% Similarity=0.304 Sum_probs=40.4
Q ss_pred hhhcCCCCcEEEEEEeC-CCC--EEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc-ccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGV--EIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL-ISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~--~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l-~H~~ 432 (433)
+.||+|+||.||+|... +|. .+|||++.... +....++|.+|++++.++ +|+.
T Consensus 13 ~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~----~~~~~~~~~~Ei~~l~~l~~h~~ 69 (303)
T cd05088 13 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA----SKDDHRDFAGELEVLCKLGHHPN 69 (303)
T ss_pred eeecCCCCceEEEEEEccCCceeeEEEEEecccC----CHHHHHHHHHHHHHHHHhcCCCC
Confidence 78999999999999974 454 46888875322 233467899999999999 7863
No 220
>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the
Probab=97.08 E-value=0.0012 Score=62.46 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=43.1
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +|+.||||+++..... ......+.+|++++.+++|..
T Consensus 11 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~h~n 65 (293)
T cd07843 11 NRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEK---EGFPITSLREINILLKLQHPN 65 (293)
T ss_pred hhhcCCCCeEEEEEEECCCCcEEEEEEEeecccc---ccchhhHHHHHHHHHhcCCCC
Confidence 78999999999999985 5889999999643321 222456889999999999973
No 221
>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki
Probab=97.08 E-value=0.00059 Score=62.99 Aligned_cols=49 Identities=22% Similarity=0.373 Sum_probs=41.1
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|.. .++.||||++.... ....|.+|+.++.+++|..
T Consensus 12 ~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~-------~~~~~~~e~~~l~~~~~~~ 60 (254)
T cd05083 12 EIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV-------TAQAFLEETAVMTKLHHKN 60 (254)
T ss_pred eeeccCCCCceEeccc-CCCceEEEeecCcc-------hHHHHHHHHHHHHhCCCCC
Confidence 7899999999999986 78889999985311 2467999999999999973
No 222
>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul
Probab=97.08 E-value=0.00056 Score=66.92 Aligned_cols=55 Identities=18% Similarity=0.082 Sum_probs=42.5
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++... +|+.||||++....... ......+..|++++.+++|.+
T Consensus 7 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~ 62 (360)
T cd05627 7 KVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLE--KEQVAHIRAERDILVEADGAW 62 (360)
T ss_pred EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhh--hhhHHHHHHHHHHHHhCCCCC
Confidence 78999999999999875 68999999996322111 223567899999999998863
No 223
>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions
Probab=97.08 E-value=0.00085 Score=62.53 Aligned_cols=53 Identities=17% Similarity=0.338 Sum_probs=41.6
Q ss_pred hhhcCCCCcEEEEEEeCCC----CEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSNG----VEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g----~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|...+. ..||||+...... ....++|.+|+.++.++.|++
T Consensus 12 ~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~----~~~~~~~~~e~~~l~~~~h~~ 68 (270)
T cd05056 12 RCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTS----PSVREKFLQEAYIMRQFDHPH 68 (270)
T ss_pred eeeCCccceeEEEEEEecCCCCCcceEEEecCCcCC----HHHHHHHHHHHHHHHhCCCCc
Confidence 7899999999999987443 4689998853221 334568999999999999986
No 224
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.07 E-value=0.0016 Score=63.72 Aligned_cols=97 Identities=20% Similarity=0.231 Sum_probs=55.3
Q ss_pred CCEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccc-cCCCCCchhccCCCCCcEEE
Q 013931 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN-NFSGPLPNDLGINHSLTILL 151 (433)
Q Consensus 73 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N-~l~~~~p~~~~~l~~L~~L~ 151 (433)
.+++.|++++|.|+ .+|. + -.+|+.|+++++.-...+|..+ ..+|+.|++++| .+. .+|.. |+.|+
T Consensus 52 ~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~s------Le~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPES------VRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccccc------cceEE
Confidence 45778888888776 4552 1 2357888887643323566544 247777888777 443 45533 44555
Q ss_pred ccCCCC--cccCchhhhCC------------------CCCCEEEccCCCCC
Q 013931 152 LDNNDF--VGSLSPEIYKL------------------QVLSESQVDEGQLS 182 (433)
Q Consensus 152 l~~N~l--~~~~p~~l~~l------------------~~L~~L~l~~n~l~ 182 (433)
++.|.. -+.+|..+..| ++|++|++.+|...
T Consensus 119 L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 119 IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred eCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence 554432 12445443322 36777777776644
No 225
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=97.07 E-value=0.00077 Score=63.25 Aligned_cols=65 Identities=22% Similarity=0.337 Sum_probs=50.3
Q ss_pred CCHHHHHHHHhhhh--hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc-ccCC
Q 013931 362 LKRSELEAACEDFS--NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL-ISKC 432 (433)
Q Consensus 362 ~~~~el~~at~~f~--~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l-~H~~ 432 (433)
.++.++..+.+.|. ..||.|+||.||+|.. .+++.+|+|.+.... ....++..|+.++.++ +|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~------~~~~~~~~e~~~l~~~~~h~~ 74 (282)
T cd06636 6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE------DEEEEIKLEINMLKKYSHHRN 74 (282)
T ss_pred hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh------HHHHHHHHHHHHHHHhcCCCc
Confidence 46667767777777 7899999999999998 468899999885321 2246799999999988 5763
No 226
>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke
Probab=97.06 E-value=0.00097 Score=63.02 Aligned_cols=52 Identities=21% Similarity=0.208 Sum_probs=41.0
Q ss_pred hhhcCCCCcEEEEEEeCC-----------------CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLSN-----------------GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~-----------------g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||++...+ +..||+|++..... .....+|.+|+++|.+++|.
T Consensus 11 ~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~----~~~~~~~~~e~~~l~~l~~~ 79 (296)
T cd05051 11 EKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDAS----DNAREDFLKEVKILSRLSDP 79 (296)
T ss_pred ccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccC----HHHHHHHHHHHHHHHhcCCC
Confidence 789999999999988743 24689999864322 33467899999999999986
No 227
>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re
Probab=97.04 E-value=0.00091 Score=61.79 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=40.5
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++||+|+||.||+|.. .|+.||+|.++... ..+.|.+|+.++.+++|.
T Consensus 12 ~~lg~g~~~~v~~~~~-~~~~~~~k~~~~~~-------~~~~~~~e~~~l~~l~~~ 59 (256)
T cd05082 12 QTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA-------TAQAFLAEASVMTQLRHS 59 (256)
T ss_pred eeecccCCCeEEEEEE-cCCcEEEEEeCCCc-------hHHHHHHHHHHHHhCCCC
Confidence 7899999999999988 68889999985321 146799999999999996
No 228
>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit
Probab=97.04 E-value=0.00085 Score=63.56 Aligned_cols=53 Identities=21% Similarity=0.192 Sum_probs=40.6
Q ss_pred hhhcCCCCcEEEEEEeC-----------------CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-----------------NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-----------------~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++... ++..||||++.... ......+|..|+++|.+++|..
T Consensus 11 ~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~----~~~~~~~~~~E~~~l~~l~~~~ 80 (296)
T cd05095 11 EKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDA----NKNARNDFLKEIKIMSRLKDPN 80 (296)
T ss_pred eeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccC----CHHHHHHHHHHHHHHHhCCCCC
Confidence 78999999999997532 34468999986432 1333578999999999999974
No 229
>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio
Probab=97.03 E-value=0.00093 Score=62.72 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=42.8
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
..||+|+||.||+|... +|+.||+|++...... ....+.|.+|++++.+++|..
T Consensus 7 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~~e~~~l~~~~h~~ 61 (286)
T cd07847 7 SKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDD---PVIKKIALREIRMLKQLKHPN 61 (286)
T ss_pred eeecccCCeEEEEEEECCCCcEEEEEEEeecccC---ccccHHHHHHHHHHHhCCCCC
Confidence 67999999999999986 5899999998643211 122467899999999999973
No 230
>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po
Probab=97.02 E-value=0.0011 Score=62.07 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=43.3
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +|+.||||++..... ......+|.+|++++.+++|+.
T Consensus 5 ~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~---~~~~~~~~~~e~~~l~~l~~~~ 59 (287)
T cd07840 5 AQIGEGTYGQVYKARNKKTGELVALKKIRMENE---KEGFPITAIREIKLLQKLRHPN 59 (287)
T ss_pred EEeccCCCeEEEEEEECCCCeEEEEEEEecccc---cccchHHHHHHHHHHHhccCCC
Confidence 57999999999999875 589999999975431 1223567999999999999974
No 231
>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta. Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.
Probab=97.02 E-value=0.00066 Score=65.63 Aligned_cols=55 Identities=15% Similarity=0.027 Sum_probs=41.5
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++... +++.||||.+...... .......|..|+.++..++|..
T Consensus 7 ~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~~~e~~~l~~~~~~~ 62 (331)
T cd05624 7 KVIGRGAFGEVAVVKMKHTERIYAMKILNKWEML--KRAETACFREERNVLVNGDCQW 62 (331)
T ss_pred EEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHH--hhHHHHHHHHHHHHHHhCCCCC
Confidence 67999999999999875 6788999998632111 1222456899999999988863
No 232
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=97.02 E-value=0.0017 Score=62.29 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=42.8
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|.. .+|+.||||++...... ......+|.+|++++.+++|.
T Consensus 31 ~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~--~~~~~~~~~~e~~~l~~l~h~ 85 (317)
T cd06635 31 REIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQ--SNEKWQDIIKEVKFLQRIKHP 85 (317)
T ss_pred heeccCCCeEEEEEEEcCCCcEEEEEEEecCCCC--chHHHHHHHHHHHHHHhCCCC
Confidence 6799999999999986 46889999998643222 123356799999999999996
No 233
>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl
Probab=97.02 E-value=0.0012 Score=62.60 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=42.0
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +++.||+|.+....... ....+.+|++++.+++|..
T Consensus 12 ~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~----~~~~~~~E~~~l~~l~h~n 65 (301)
T cd07873 12 DKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEG----APCTAIREVSLLKDLKHAN 65 (301)
T ss_pred eEeccCcCEEEEEEEEcCCCcEEEEEEEecccccC----chhHHHHHHHHHHhcCCCC
Confidence 67999999999999874 57899999986433221 2356889999999999974
No 234
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.01 E-value=0.00031 Score=65.78 Aligned_cols=111 Identities=16% Similarity=0.192 Sum_probs=83.0
Q ss_pred CCEEEEEecCCCCcccCcc----cccCCCCCcEEEeeCCccccc-------------CccccCCCCcCceeecccccCCC
Q 013931 73 GKVVNLNLKDLCLEGTLAP----EIQSLTHIKSIILRNNSFSGI-------------IPEGFGELEELEVLDFGHNNFSG 135 (433)
Q Consensus 73 ~~l~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~N~l~~~-------------~p~~~~~l~~L~~L~ls~N~l~~ 135 (433)
++++.||||+|-|...-+. -+.++..|+.|.|.+|.+... ...-+..-+.|+++...+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 4899999999998754443 367789999999999988621 11224456789999999999863
Q ss_pred C----CchhccCCCCCcEEEccCCCCcc----cCchhhhCCCCCCEEEccCCCCCC
Q 013931 136 P----LPNDLGINHSLTILLLDNNDFVG----SLSPEIYKLQVLSESQVDEGQLSS 183 (433)
Q Consensus 136 ~----~p~~~~~l~~L~~L~l~~N~l~~----~~p~~l~~l~~L~~L~l~~n~l~~ 183 (433)
. +...|...+.|+.+.+..|.|.- .+-..|..+++|+.|||.+|-|+-
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL 227 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence 2 22346677889999999998752 123467889999999999998873
No 235
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=97.00 E-value=0.0012 Score=62.55 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=41.7
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
..||+|+||.||+|.. .+|+.||||++.... ......|.+|+.++.+++|.
T Consensus 26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~-----~~~~~~~~~e~~~l~~l~h~ 77 (292)
T cd06657 26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRK-----QQRRELLFNEVVIMRDYQHE 77 (292)
T ss_pred HHcCCCCCeEEEEEEEcCCCeEEEEEEecccc-----hhHHHHHHHHHHHHHhcCCc
Confidence 5799999999999988 478999999985322 22356799999999999985
No 236
>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i
Probab=97.00 E-value=0.0018 Score=61.54 Aligned_cols=51 Identities=16% Similarity=0.179 Sum_probs=41.7
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
..||+|+||.||++... +|+.||||++...... ....|.+|+.++..++|.
T Consensus 27 ~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~-----~~~~~~~e~~~l~~l~hp 78 (297)
T cd06659 27 IKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQ-----RRELLFNEVVIMRDYQHQ 78 (297)
T ss_pred hhcCCCCceeEEEEEEcCCCCEEEEEEEEecccc-----hHHHHHHHHHHHHhCCCC
Confidence 57999999999999874 7899999998643222 246799999999999996
No 237
>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity. Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....
Probab=97.00 E-value=0.00092 Score=61.66 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=40.4
Q ss_pred hhhcCCCCcEEEEEEeCC-CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~-g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||+||++.-.+ ++.+|+|.+...... .........|++++.+++|++
T Consensus 5 ~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~---~~~~~~~~~e~~~~~~l~~~~ 59 (260)
T PF00069_consen 5 KKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIE---EEEREENIREIKILRRLRHPN 59 (260)
T ss_dssp EEEEEESSEEEEEEEETTTTEEEEEEEEESTTHH---HHHHHHHHHHHHHHHHHTBTT
T ss_pred EEEEeCCCEEEEEEEECCCCeEEEEEEecccccc---ccccchhhhhhhccccccccc
Confidence 579999999999999864 568999999753321 112234566999999999974
No 238
>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase. Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays
Probab=96.99 E-value=0.00085 Score=62.30 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=41.5
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|... .++.||||++... .....+|.+|+++|.+++|.
T Consensus 12 ~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~------~~~~~~~~~e~~~l~~l~h~ 62 (263)
T cd05052 12 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKED------TMEVEEFLKEAAVMKEIKHP 62 (263)
T ss_pred eecCCcccceEEEEEEecCCceEEEEEecCC------chHHHHHHHHHHHHHhCCCC
Confidence 78999999999999975 5889999998532 12256899999999999996
No 239
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=96.99 E-value=0.0012 Score=64.51 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=42.8
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++.- .+|+.||||++..... ......++.+|+.++..++|+.
T Consensus 27 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~n 81 (359)
T cd07876 27 KPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQ---NQTHAKRAYRELVLLKCVNHKN 81 (359)
T ss_pred EEeecCCCEEEEEEEEcCCCceeEEEEeccccc---chhHHHHHHHHHHHHHhCCCCC
Confidence 7899999999999986 4689999999963221 1233567899999999999973
No 240
>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4
Probab=96.98 E-value=0.0015 Score=60.36 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=43.8
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|... +++.||||.+...... ....++|.+|++++.+++|.
T Consensus 6 ~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~~~~l~~~ 59 (264)
T cd06626 6 NKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDND---PKTIKEIADEMKVLELLKHP 59 (264)
T ss_pred eEeecCCCcEEEEEEECCCCcEEEEEEEECcccc---hHHHHHHHHHHHHHHhCCCC
Confidence 57999999999999874 7889999998643321 34578899999999999996
No 241
>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C. Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory
Probab=96.98 E-value=0.00088 Score=64.50 Aligned_cols=54 Identities=11% Similarity=-0.048 Sum_probs=40.8
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|+.. +++.||||.+....... ......+..|++++..+.|.
T Consensus 6 ~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~ 60 (324)
T cd05587 6 MVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQ--DDDVECTMVEKRVLALPGKP 60 (324)
T ss_pred EEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhcCCC
Confidence 67999999999999875 46789999996432111 22246789999999988764
No 242
>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=96.98 E-value=0.00047 Score=67.08 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=41.8
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc-cCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI-SKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~-H~~ 432 (433)
++||.|.||.||+|+- ..|..||||+++..... + .+--=++||+.|.++. |.|
T Consensus 16 ~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s-~---ee~~nLREvksL~kln~hpn 70 (538)
T KOG0661|consen 16 RKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYS-W---EECMNLREVKSLRKLNPHPN 70 (538)
T ss_pred HHhcCCcceeEEEeeecCCCceeeHHHHHhhhcc-H---HHHHHHHHHHHHHhcCCCCc
Confidence 6799999999999985 57999999999643221 1 1334589999999999 987
No 243
>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi
Probab=96.98 E-value=0.0012 Score=64.22 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=42.2
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|.- .+|+.||||++..... ...+.+.+|+++|.+++|.
T Consensus 11 ~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~-----~~~~~~~~Ei~~l~~l~h~ 62 (342)
T cd07854 11 RPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDP-----QSVKHALREIKIIRRLDHD 62 (342)
T ss_pred EEecCCCCEEEEEEEECCCCcEEEEEEEecCCC-----chHHHHHHHHHHHHhcCCC
Confidence 7899999999999987 4689999999864332 2257799999999999986
No 244
>PHA03211 serine/threonine kinase US3; Provisional
Probab=96.97 E-value=0.00089 Score=67.73 Aligned_cols=46 Identities=9% Similarity=0.041 Sum_probs=38.5
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
..||+|+||.||+++.+ .++.||||+.. ...+.+|+++|.+++|+.
T Consensus 175 ~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~-----------~~~~~~E~~iL~~L~Hpn 221 (461)
T PHA03211 175 RALTPGSEGCVFESSHPDYPQRVVVKAGW-----------YASSVHEARLLRRLSHPA 221 (461)
T ss_pred EEEccCCCeEEEEEEECCCCCEEEEeccc-----------ccCHHHHHHHHHHCCCCC
Confidence 67999999999999985 47889999642 245789999999999974
No 245
>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s
Probab=96.96 E-value=0.00089 Score=62.55 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=41.1
Q ss_pred hhhcCCCCcEEEEEEeC------CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~------~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
..||+|+||.||+|... +.+.||||.+..... .....+|.+|++++.+++|..
T Consensus 11 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~----~~~~~~~~~E~~~l~~l~h~~ 69 (275)
T cd05046 11 TTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKD----ENLQSEFRRELDMFRKLSHKN 69 (275)
T ss_pred eeecccceeEEEEEEeccCCcCCCcceEEEEccCCccc----hHHHHHHHHHHHHHHhcCCcc
Confidence 67999999999999863 356799998853222 123568999999999999963
No 246
>PHA03212 serine/threonine kinase US3; Provisional
Probab=96.96 E-value=0.00075 Score=66.91 Aligned_cols=46 Identities=2% Similarity=-0.051 Sum_probs=39.1
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++.- ..++.||||+.. ...+.+|+++|.+++|..
T Consensus 98 ~~lg~G~~g~V~~~~d~~~~~~vaiK~~~-----------~~~~~~E~~il~~l~Hpn 144 (391)
T PHA03212 98 ETFTPGAEGFAFACIDNKTCEHVVIKAGQ-----------RGGTATEAHILRAINHPS 144 (391)
T ss_pred EEEcCCCCeEEEEEEECCCCCEEEEechh-----------hhhhHHHHHHHHhCCCCC
Confidence 7899999999999986 468899999753 245889999999999974
No 247
>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly
Probab=96.96 E-value=0.00085 Score=63.29 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=40.5
Q ss_pred hhhcCCCCcEEEEEEe------CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l------~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||+||++.. .++..+|||.+.... .....+|.+|+++|.+++|.
T Consensus 11 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~-----~~~~~~~~~e~~~l~~l~h~ 67 (288)
T cd05093 11 RELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS-----DNARKDFHREAELLTNLQHE 67 (288)
T ss_pred cccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcC-----HHHHHHHHHHHHHHHhCCCC
Confidence 7899999999999985 235568999985322 23356899999999999997
No 248
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=96.95 E-value=0.0015 Score=65.46 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=44.7
Q ss_pred ccCCCCCCHHHHHHHHhh---------h---h-hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHH
Q 013931 356 VTGVPKLKRSELEAACED---------F---S-NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKV 422 (433)
Q Consensus 356 ~~~~~~~~~~el~~at~~---------f---~-~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev 422 (433)
+...+.++++++++.-.. | + +.||.|++|.||+|++.+|+.||||...+.. .+.|..++
T Consensus 90 qd~v~p~~~~~~~~~l~~elg~~~~~~F~~fd~~plasaSigQVh~A~l~~G~~VaVKv~rp~i--------~~~i~~Dl 161 (437)
T TIGR01982 90 QDRVPPFDFKVARKVIEAALGGPLEELFAEFEEKPLAAASIAQVHRARLVDGKEVAVKVLRPGI--------EKTIAADI 161 (437)
T ss_pred hcCCCCCCHHHHHHHHHHHhCcCHHHHHhhCCCcceeeeehhheEEEEecCCCEEEEEeeCCCc--------HHHHHHHH
Confidence 345556666665543221 3 3 6799999999999999999999999986422 35566666
Q ss_pred HHhhh
Q 013931 423 IYQQL 427 (433)
Q Consensus 423 ~~L~~ 427 (433)
++|..
T Consensus 162 ~~l~~ 166 (437)
T TIGR01982 162 ALLYR 166 (437)
T ss_pred HHHHH
Confidence 66543
No 249
>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.
Probab=96.95 E-value=0.0011 Score=61.05 Aligned_cols=54 Identities=13% Similarity=0.223 Sum_probs=42.8
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +|..||+|.+...... ....+.+.+|++++.+++|..
T Consensus 6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~E~~~l~~~~h~~ 60 (257)
T cd08225 6 KKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMP---VKEKEASKKEVILLAKMKHPN 60 (257)
T ss_pred EEecCCCcceEEEEEEcCCCceEEEEEeeHhhcc---chhhHHHHHHHHHHHhCCCCC
Confidence 67999999999999985 5889999998643211 123567999999999999973
No 250
>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi
Probab=96.95 E-value=0.0013 Score=62.24 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=41.9
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|.- .+++.||||.+..... ...+.|.+|+.++.+++|.+
T Consensus 25 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~-----~~~~~~~~e~~~l~~l~hp~ 77 (293)
T cd06647 25 EKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQ-----PKKELIINEILVMRENKHPN 77 (293)
T ss_pred eEecCCCCeEEEEEEEcCCCCEEEEEEeccccc-----hHHHHHHHHHHHHhhcCCCC
Confidence 6799999999999985 4788999999853221 22467999999999999974
No 251
>smart00219 TyrKc Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily.
Probab=96.95 E-value=0.0012 Score=60.84 Aligned_cols=53 Identities=26% Similarity=0.383 Sum_probs=42.7
Q ss_pred hhhcCCCCcEEEEEEeCC-----CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSN-----GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~-----g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+++..+ +..||+|++...... ...+.|..|++++.+++|+.
T Consensus 5 ~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~----~~~~~~~~e~~~l~~l~~~~ 62 (258)
T smart00219 5 KKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADE----QQIEEFLREARIMRKLDHPN 62 (258)
T ss_pred ceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCCh----HHHHHHHHHHHHHHhcCCCc
Confidence 679999999999999864 488999999643321 23678999999999999873
No 252
>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=96.95 E-value=0.0013 Score=62.02 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=42.8
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||.|+||.||++... +++.+|+|.+..... .....+|.+|+++|.+++|.
T Consensus 7 ~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~----~~~~~~~~~e~~~l~~l~h~ 59 (287)
T cd06621 7 SRLGEGAGGSVTKCRLKNTGMIFALKTITTDPN----PDLQKQILRELEINKSCKSP 59 (287)
T ss_pred EEeccCCceEEEEEEECCCCeEEEEEEEecCCc----hHHHHHHHHHHHHHHhCCCC
Confidence 68999999999999984 688999999864222 23367899999999999996
No 253
>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10. Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing
Probab=96.94 E-value=0.00097 Score=63.61 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=42.1
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +|+.||+|++....... .....+.+|++++.+++|+.
T Consensus 13 ~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~~~E~~~l~~l~h~~ 67 (309)
T cd07845 13 NRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERD---GIPISSLREITLLLNLRHPN 67 (309)
T ss_pred eeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCC---CCcchhhHHHHHHHhCCCCC
Confidence 78999999999999974 68999999986433211 11346778999999999973
No 254
>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc
Probab=96.93 E-value=0.0014 Score=61.39 Aligned_cols=53 Identities=17% Similarity=0.274 Sum_probs=42.2
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|++|.||+|... +|+.||||++...... ......|.+|++++.+++|.
T Consensus 5 ~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~E~~~l~~l~~~ 58 (283)
T cd07835 5 EKIGEGTYGVVYKARDKLTGEIVALKKIRLETED---EGVPSTAIREISLLKELNHP 58 (283)
T ss_pred eEecCCCCeEEEEEEEcCCCCEEEEEEeeccccc---ccchhHHHHHHHHHHhcCCC
Confidence 57999999999999874 7999999998643211 12246799999999999996
No 255
>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi
Probab=96.92 E-value=0.0018 Score=59.81 Aligned_cols=54 Identities=20% Similarity=0.190 Sum_probs=42.9
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||.|+||.||++.- .+|+.||+|++.... .......+|.+|++++.+++|..
T Consensus 6 ~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~~~e~~~l~~l~~~~ 60 (265)
T cd08217 6 ETIGKGSFGTVRKVRRKSDGKILVWKEIDYGN---MTEKEKQQLVSEVNILRELKHPN 60 (265)
T ss_pred eeeccCCCeEEEEeeecCCCCEEEEEEEeccc---CCHHHHHHHHHHHHHHHhcCCCc
Confidence 6799999999999986 478899999986422 22334567999999999999963
No 256
>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=96.92 E-value=0.0014 Score=62.06 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=42.3
Q ss_pred hhhcCCCCcEEEEEEeCC-CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~-g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|.||.||.+...+ |...|||.+...... ..+...+|+.+|.+++|.
T Consensus 23 ~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~-----~~~~l~~Ei~iL~~l~~p 74 (313)
T KOG0198|consen 23 KLLGRGSFGSVYLATNKKTGELMAVKSVELEDSP-----TSESLEREIRILSRLNHP 74 (313)
T ss_pred ccccCccceEEEEEEecCCCcceeeeeeecccch-----hHHHHHHHHHHHHhCCCC
Confidence 789999999999999865 999999998643211 156799999999999986
No 257
>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their
Probab=96.92 E-value=0.0019 Score=60.00 Aligned_cols=56 Identities=16% Similarity=0.244 Sum_probs=43.2
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCc-hhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWP-KNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~-~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|.- .+|+.||+|.+......... ....++|.+|++++.+++|.
T Consensus 6 ~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~ 63 (268)
T cd06630 6 QQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHP 63 (268)
T ss_pred ceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCC
Confidence 6799999999999885 57899999998643322111 22357899999999999996
No 258
>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase. Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.
Probab=96.92 E-value=0.0014 Score=61.62 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=41.7
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
..||+|+||.||+|... ++..+|+|++.... ......|.+|++++..++|+.
T Consensus 11 ~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~-----~~~~~~~~~e~~~l~~l~h~~ 63 (282)
T cd06643 11 GELGDGAFGKVYKAQNKETGVLAAAKVIDTKS-----EEELEDYMVEIDILASCDHPN 63 (282)
T ss_pred hhcccCCCeEEEEEEECCCCeEEEEEEeCCCC-----HHHHHHHHHHHHHHHHCCCCC
Confidence 67999999999999985 47788999885322 233567999999999999984
No 259
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=96.92 E-value=0.0013 Score=62.59 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=42.1
Q ss_pred hhhh--hhhcCCCCcEEEEEEe------CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc-ccC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL-ISK 431 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l------~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l-~H~ 431 (433)
++|. +.||+|+||.||+|.. .++..||||+++.... ......|.+|++++.++ +|+
T Consensus 35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~~E~~~l~~l~~h~ 99 (302)
T cd05055 35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAH----SSEREALMSELKIMSHLGNHE 99 (302)
T ss_pred HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCC----hHHHHHHHHHHHHHHhccCCC
Confidence 4555 8899999999999874 2355799999863221 22346799999999999 686
No 260
>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a
Probab=96.92 E-value=0.00093 Score=64.33 Aligned_cols=54 Identities=11% Similarity=-0.034 Sum_probs=40.3
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||++... +|+.||||.+....... ......+..|++++..+.|.
T Consensus 6 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~ 60 (323)
T cd05615 6 MVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQ--DDDVECTMVEKRVLALQDKP 60 (323)
T ss_pred EEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhccCC
Confidence 78999999999999864 68999999996432111 12245688899999887653
No 261
>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha. Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw
Probab=96.91 E-value=0.00082 Score=64.95 Aligned_cols=54 Identities=17% Similarity=0.057 Sum_probs=40.7
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++||+|+||.||++... .++.+|||.+...... .......|..|+.++..++|.
T Consensus 7 ~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~~~e~~~l~~~~~~ 61 (332)
T cd05623 7 KVIGRGAFGEVAVVKLKNADKVFAMKILNKWEML--KRAETACFREERDVLVNGDNQ 61 (332)
T ss_pred EEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHH--HhhHHHHHHHHHHHHhhCCCC
Confidence 68999999999999985 4778999998532111 112245699999999998886
No 262
>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological
Probab=96.91 E-value=0.0015 Score=60.99 Aligned_cols=53 Identities=15% Similarity=0.299 Sum_probs=41.6
Q ss_pred hhhcCCCCcEEEEEEeCC------CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSN------GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~------g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|...+ +..||||.+.... ......+|.+|+.+|..++|..
T Consensus 12 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~----~~~~~~~~~~e~~~l~~~~~~~ 70 (277)
T cd05032 12 RELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENA----SMRERIEFLNEASVMKEFNCHH 70 (277)
T ss_pred eEecCCCCceEEEEEEeccCCCCcceeEEEEecCCcc----CHHHHHHHHHHHHHHHhCCCCc
Confidence 789999999999998743 3679999985322 1233568999999999999874
No 263
>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter
Probab=96.91 E-value=0.0023 Score=59.94 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=42.8
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||.|+||.||+|... +++.||||.+..... ......|.+|++++.+++|+.
T Consensus 10 ~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~e~~~l~~l~h~~ 63 (277)
T cd06640 10 ERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEA----EDEIEDIQQEITVLSQCDSPY 63 (277)
T ss_pred hhcccCCCeEEEEEEEccCCEEEEEEEEecccc----HHHHHHHHHHHHHHHhCCCCC
Confidence 67999999999999874 588999999863221 233578999999999999973
No 264
>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase. Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea
Probab=96.90 E-value=0.0019 Score=60.52 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=43.3
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +|+.||||++...... .....+|.+|++++.+++|..
T Consensus 6 ~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~---~~~~~~~~~e~~~l~~~~~~~ 60 (286)
T cd07832 6 GRIGEGAHGIVFKAKDRETGETVALKKVALRRLE---GGIPNQALREIKALQACQHPY 60 (286)
T ss_pred eecccCCCcEEEEEEECCCCceEEEEEEEccccc---chhhHHHHHHHHHHHhCCCCC
Confidence 67999999999999974 7899999999653321 223578999999999999974
No 265
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=96.90 E-value=0.0014 Score=63.86 Aligned_cols=58 Identities=14% Similarity=0.148 Sum_probs=44.5
Q ss_pred hhhh--hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.|. +.||+|+||.||++.- ..++.||||++..... .......+.+|+.++..++|+.
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~n 77 (355)
T cd07874 17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ---NQTHAKRAYRELVLMKCVNHKN 77 (355)
T ss_pred hceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCccc---ChHHHHHHHHHHHHHHHhCCCc
Confidence 4555 7899999999999975 3688999999964221 1223567889999999999974
No 266
>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of
Probab=96.90 E-value=0.0013 Score=60.74 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=43.3
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+++.. +|+.||||++..... .....+|.+|++.+.+++|.
T Consensus 7 ~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~----~~~~~~~~~e~~~l~~l~~~ 59 (264)
T cd06623 7 KVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGD----EEFRKQLLRELKTLRSCESP 59 (264)
T ss_pred eeeeecCCeEEEEEEEcCCCcEEEEEEeccCcc----hHHHHHHHHHHHHHHhcCCC
Confidence 78999999999999986 499999999864322 13367899999999999986
No 267
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=96.90 E-value=0.0018 Score=63.59 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=43.7
Q ss_pred hhhcCCCCcEEEEEEeCC-CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc-cC
Q 013931 376 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI-SK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~-g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~-H~ 431 (433)
++||+|.||.||+++-.. |+.+|+|.+......+ ......+.+||++|.++. |+
T Consensus 41 ~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~--~~~~~~v~~Ev~il~~l~~hp 96 (382)
T KOG0032|consen 41 RELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRG--KEDREDVRREVAILQQLSGHP 96 (382)
T ss_pred hhhCCCCceEEEEEEecCCCceeEEEEeehhhccc--cccHHHHHHHHHHHHhccCCC
Confidence 789999999999999865 9999999996544322 123468999999999997 75
No 268
>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory
Probab=96.89 E-value=0.0015 Score=61.35 Aligned_cols=51 Identities=18% Similarity=0.301 Sum_probs=40.8
Q ss_pred hhhcCCCCcEEEEEEeC------CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~------~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
.+||+||||.||++... ++..||||.+.... .....+|.+|++++..++|.
T Consensus 11 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~-----~~~~~~~~~e~~~l~~l~h~ 67 (280)
T cd05092 11 WELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS-----ESARQDFQREAELLTVLQHQ 67 (280)
T ss_pred cccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCC-----HHHHHHHHHHHHHHhcCCCC
Confidence 78999999999999742 46689999985322 23357899999999999996
No 269
>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK
Probab=96.89 E-value=0.0017 Score=59.55 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=43.6
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|+.. +|+.|+||++...... +.....|.+|++++.++.|.
T Consensus 6 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~~~ 59 (260)
T cd06606 6 ELLGRGSFGSVYLALDKDTGELMAVKSVELSGDS---EEELEALEREIRILSSLQHP 59 (260)
T ss_pred eEeeecCceEEEEEEECCCCcEEEEEEeeccccc---hHHHHHHHHHHHHHHHcCCC
Confidence 67999999999999986 6999999998643321 33467899999999999986
No 270
>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481
Probab=96.89 E-value=0.0013 Score=69.77 Aligned_cols=55 Identities=27% Similarity=0.192 Sum_probs=44.0
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +|+.||||++...... ......+|.+|++++..++|.+
T Consensus 10 ~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~--~~~~~~~~~~E~~~l~~l~hp~ 65 (669)
T cd05610 10 KPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMI--NKNMVHQVQAERDALALSKSPF 65 (669)
T ss_pred EEEecCCCeEEEEEEECCCCcEEEEEEEehhhcc--CHHHHHHHHHHHHHHHhcCCCC
Confidence 78999999999999985 6899999999643221 1333577999999999999975
No 271
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=96.89 E-value=0.0015 Score=64.02 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=44.3
Q ss_pred hhhh--hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
++|. +.||+|+||.||++.- ..++.||||++..... ......++.+|+.++..++|+.
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~~ 84 (364)
T cd07875 24 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ---NQTHAKRAYRELVLMKCVNHKN 84 (364)
T ss_pred cceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCcccc---CchhHHHHHHHHHHHHhcCCCC
Confidence 3444 7899999999999985 3688999999964221 1223567899999999999974
No 272
>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase. Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm
Probab=96.87 E-value=0.0011 Score=62.71 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=40.5
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhccc
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLIS 430 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H 430 (433)
+.||+|+||.||+|... +|+.||||++...... .....++.+|++++..++|
T Consensus 7 ~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~---~~~~~~~~~E~~~l~~l~~ 59 (295)
T cd07837 7 EKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDE---EGIPPTALREISLLQMLSE 59 (295)
T ss_pred eEecccCCeEEEEEEECCCCcEEEEEeehhhccc---cCCchHHHHHHHHHHHccC
Confidence 67999999999999975 6899999998543221 1124678999999999964
No 273
>PLN00009 cyclin-dependent kinase A; Provisional
Probab=96.87 E-value=0.0012 Score=62.34 Aligned_cols=53 Identities=15% Similarity=0.242 Sum_probs=42.2
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|... +|+.||||++...... ....+.|.+|++++.+++|.
T Consensus 8 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~ 61 (294)
T PLN00009 8 EKIGEGTYGVVYKARDRVTNETIALKKIRLEQED---EGVPSTAIREISLLKEMQHG 61 (294)
T ss_pred EEecCCCCEEEEEEEecCCCcEEEEEehhhcccc---ccchHHHHHHHHHHHhccCC
Confidence 67999999999999875 7899999998543211 12246799999999999996
No 274
>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla
Probab=96.87 E-value=0.0022 Score=60.44 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=38.3
Q ss_pred hhhcCCCCcEEEEEEe--CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc---ccCC
Q 013931 376 NVIGSSPIGTVYKGTL--SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL---ISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l--~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l---~H~~ 432 (433)
+.||+|+||.||+|+- .+|+.||||+++...... .....+.+|++++..+ +|+.
T Consensus 7 ~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~---~~~~~~~~e~~~l~~l~~~~hpn 65 (290)
T cd07862 7 AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE---GMPLSTIREVAVLRHLETFEHPN 65 (290)
T ss_pred eEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCC---CchHHHHHHHHHHHhhcccCCCC
Confidence 6799999999999986 357889999986533221 1235677787777665 5763
No 275
>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea
Probab=96.87 E-value=0.0016 Score=60.97 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=41.1
Q ss_pred hhhcCCCCcEEEEEEeC-CCC----EEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGV----EIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~----~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|... +|. .||+|++..... .....+|.+|+++|.+++|.
T Consensus 13 ~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~----~~~~~~~~~e~~~l~~l~h~ 69 (279)
T cd05057 13 KVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETS----PKANKEILDEAYVMASVDHP 69 (279)
T ss_pred ceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCC----HHHHHHHHHHHHHHHhCCCC
Confidence 78999999999999974 343 589998864322 33457899999999999986
No 276
>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,
Probab=96.87 E-value=0.0012 Score=62.41 Aligned_cols=56 Identities=13% Similarity=0.206 Sum_probs=41.9
Q ss_pred hhhh--hhhcCCCCcEEEEEEeC------CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc-ccC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTLS------NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL-ISK 431 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l~------~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l-~H~ 431 (433)
++|. +.||+|+||.||+|... +...||||++.... ......+|.+|++++.++ +|.
T Consensus 12 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~----~~~~~~~~~~E~~~l~~l~~h~ 76 (293)
T cd05053 12 DRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDA----TEKDLSDLVSEMEMMKMIGKHK 76 (293)
T ss_pred hHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCC----CHHHHHHHHHHHHHHHhhcCCC
Confidence 3444 78999999999999874 23679999986322 123356799999999998 675
No 277
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=96.86 E-value=0.0025 Score=56.62 Aligned_cols=56 Identities=16% Similarity=0.088 Sum_probs=39.6
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCC--C---------------chhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKD--W---------------PKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~--~---------------~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||++..++|+.||||++......- . .......+..|..++.++.|.
T Consensus 21 ~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~ 93 (198)
T cd05144 21 NQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEE 93 (198)
T ss_pred CccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHc
Confidence 7899999999999999899999999876432100 0 001122477888888877664
No 278
>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning
Probab=96.86 E-value=0.00098 Score=62.63 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=42.9
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +++.||||+++..... ......|.+|++++.++.|.+
T Consensus 7 ~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~ 61 (288)
T cd07833 7 GVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDD---EDVKKTALREVKVLRQLRHEN 61 (288)
T ss_pred EEecccCCeeEEEEEeCCCCcEEEEehhhhhccc---ccchhHHHHHHHHHHhcCCCC
Confidence 67999999999999985 5889999998643221 223468999999999999874
No 279
>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul
Probab=96.86 E-value=0.0023 Score=61.97 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=43.6
Q ss_pred hhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc-ccC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL-ISK 431 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l-~H~ 431 (433)
++|. +.||+|+||.||+|... +|+.||||++...... ......+..|+.++.++ +|+
T Consensus 7 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~---~~~~~~~~~E~~~l~~l~~h~ 67 (337)
T cd07852 7 RKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRN---ATDAQRTFREIMFLQELGDHP 67 (337)
T ss_pred hHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCc---chhhhhhhHHHHHHHHhcCCC
Confidence 4454 78999999999999975 6889999998532211 12245688999999999 886
No 280
>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2
Probab=96.86 E-value=0.0015 Score=61.37 Aligned_cols=53 Identities=21% Similarity=0.334 Sum_probs=42.2
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|+.. +|+.||||++...... .....++.+|++++.+++|.
T Consensus 6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~h~ 59 (285)
T cd07861 6 EKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEE---EGVPSTAIREISLLKELQHP 59 (285)
T ss_pred eEecccCceEEEEEEECCCCcEEEEEEecccccc---CCchHHHHHHHHHHHhcCCC
Confidence 57999999999999974 6899999998643211 12246789999999999996
No 281
>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi
Probab=96.86 E-value=0.0014 Score=61.99 Aligned_cols=55 Identities=15% Similarity=0.058 Sum_probs=43.0
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++... +++.||||.+...... .......+.+|+++|.++.|..
T Consensus 7 ~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~ 62 (290)
T cd05580 7 KTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIV--KLKQVEHVLNEKRILQSIRHPF 62 (290)
T ss_pred EEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhh--hhhHHHHHHHHHHHHHhCCCCC
Confidence 67999999999999875 6899999998632211 1223567999999999999974
No 282
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=96.86 E-value=0.00079 Score=67.62 Aligned_cols=51 Identities=18% Similarity=0.265 Sum_probs=43.9
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
++||-|-||.||.|++. -.-.||||.|++. .+...||+.|..+|..|+|+.
T Consensus 273 hKLGGGQYGeVYeGvWKkyslTvAVKtLKED------tMeveEFLkEAAvMKeikHpN 324 (1157)
T KOG4278|consen 273 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKED------TMEVEEFLKEAAVMKEIKHPN 324 (1157)
T ss_pred eccCCCcccceeeeeeeccceeeehhhhhhc------chhHHHHHHHHHHHHhhcCcc
Confidence 89999999999999995 4668999999732 445789999999999999974
No 283
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=96.86 E-value=0.002 Score=60.68 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=45.1
Q ss_pred HHhhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 370 ACEDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 370 at~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
.+++|. +.||+|+||.||+|... +++.||||++..... ...+|.+|++++.+++|+
T Consensus 17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~------~~~~~~~e~~~l~~l~~~ 75 (286)
T cd06614 17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ------NKELIINEILIMKDCKHP 75 (286)
T ss_pred ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch------hHHHHHHHHHHHHHCCCC
Confidence 344444 78999999999999986 689999999964322 357899999999999986
No 284
>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent
Probab=96.85 E-value=0.0023 Score=59.80 Aligned_cols=50 Identities=20% Similarity=0.397 Sum_probs=40.3
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI 429 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~ 429 (433)
+.||+|+||.||+|+. .+|+.||||.+..... .....+|.+|++++.+++
T Consensus 7 ~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~----~~~~~~~~~e~~~l~~l~ 57 (277)
T cd06917 7 ELIGRGAYGAVYRGKHVPTGRVVALKIINLDTP----DDDVSDIQREVALLSQLR 57 (277)
T ss_pred hheeccCCceEEEEEEcCCCcEEEEEEecCCCC----chhHHHHHHHHHHHHHhc
Confidence 6799999999999996 5789999999864322 223567999999999987
No 285
>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a
Probab=96.85 E-value=0.002 Score=59.36 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=41.5
Q ss_pred hhhcCCCCcEEEEEEeCC-CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~-g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|...+ ++.+|||.+.... ...+|.+|++++.+++|.
T Consensus 9 ~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~-------~~~~~~~e~~~~~~l~~~ 58 (256)
T cd06612 9 EKLGEGSYGSVYKAIHKETGQVVAIKVVPVEE-------DLQEIIKEISILKQCDSP 58 (256)
T ss_pred hhhcCCCCeEEEEEEEcCCCcEEEEEEeecHH-------HHHHHHHHHHHHHhCCCC
Confidence 789999999999999865 8899999985321 157899999999999886
No 286
>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1. Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.
Probab=96.85 E-value=0.0017 Score=61.62 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=39.5
Q ss_pred hhhcCCCCcEEEEEEeCC-CC--EEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc-ccC
Q 013931 376 NVIGSSPIGTVYKGTLSN-GV--EIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL-ISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~-g~--~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l-~H~ 431 (433)
+.||+|+||.||+|...+ |+ .+|||.++.... ....++|.+|++++.++ +|.
T Consensus 8 ~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~----~~~~~~~~~E~~~l~~l~~hp 63 (297)
T cd05089 8 DVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFAS----ENDHRDFAGELEVLCKLGHHP 63 (297)
T ss_pred eeecCCCcceEEEEEecCCCCcceeEEEEccccCC----HHHHHHHHHHHHHHHhhcCCC
Confidence 689999999999999854 43 478888863221 22356799999999999 675
No 287
>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin
Probab=96.83 E-value=0.0019 Score=61.74 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=43.4
Q ss_pred hhhcCCCCcEEEEEEeCC-CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~-g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++...+ |+.+|||.+....... ....+.|..|++++..+.|..
T Consensus 7 ~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~ 62 (316)
T cd05574 7 KLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIK--RNKVKRVLTEQEILATLDHPF 62 (316)
T ss_pred eeecCCccEEEEEEEEcCCCcEEEEEEEeccccch--HHHHHHHHHHHHHHHhCCCCC
Confidence 679999999999999864 8999999996432211 123567999999999999874
No 288
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=96.83 E-value=0.0026 Score=60.85 Aligned_cols=54 Identities=26% Similarity=0.276 Sum_probs=42.6
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||+||+|... +|+.||||++....... .....++.+|++++.+++|.
T Consensus 27 ~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~--~~~~~~~~~E~~~l~~l~h~ 81 (313)
T cd06633 27 HEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQT--NEKWQDIIKEVKFLQQLKHP 81 (313)
T ss_pred eeeccCCCeEEEEEEECCCCcEEEEEEEeccccCc--hHHHHHHHHHHHHHHhCCCC
Confidence 67999999999999874 68899999986432221 23346799999999999996
No 289
>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte
Probab=96.82 E-value=0.0018 Score=60.27 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=41.5
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCC-----chhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDW-----PKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~-----~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||.|+||.||+|.- .+|+.||||+++....... .....+.|.+|++++.+++|.
T Consensus 7 ~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~ 68 (272)
T cd06629 7 ELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHL 68 (272)
T ss_pred ceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCC
Confidence 6799999999999976 4789999999853221110 011235689999999999996
No 290
>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin
Probab=96.82 E-value=0.0019 Score=61.47 Aligned_cols=53 Identities=25% Similarity=0.438 Sum_probs=40.5
Q ss_pred hhhcCCCCcEEEEEEe-CCCC----EEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGV----EIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~----~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|.. .+|. .||+|++..... .....+|.+|+.++.+++|+.
T Consensus 13 ~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~e~~~~~~l~h~n 70 (303)
T cd05110 13 KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTG----PKANVEFMDEALIMASMDHPH 70 (303)
T ss_pred cccccCCCccEEEEEEecCCCcceeeEEEEeccccCC----HHHHHHHHHHHHHHHhCCCCC
Confidence 7899999999999986 3454 478888853222 233467999999999999974
No 291
>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n
Probab=96.81 E-value=0.0012 Score=62.37 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=41.1
Q ss_pred hhhcCCCCcEEEEEEe------CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l------~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|+. .++..||+|++.... ....++|.+|++++.+++|.+
T Consensus 11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~-----~~~~~~~~~e~~~l~~l~h~~ 68 (291)
T cd05094 11 RELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPT-----LAARKDFQREAELLTNLQHEH 68 (291)
T ss_pred eeecccCCCeEEEeEeeccCCCCcceeeEEEecCCcc-----HHHHHHHHHHHHHHhcCCCCC
Confidence 7899999999999974 245679999985322 233578999999999999974
No 292
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=96.81 E-value=0.00049 Score=63.15 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=39.5
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI 429 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~ 429 (433)
.+||+|+||.|||+.- +.|++||||++-..+. .++...||.+|.++.
T Consensus 39 ~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~sD-------LQEIIKEISIMQQC~ 86 (502)
T KOG0574|consen 39 GKLGEGSYGSVHKAIHRESGHVLAIKKVPVDTD-------LQEIIKEISIMQQCK 86 (502)
T ss_pred HHhcCCcchHHHHHHHhccCcEEEEEecCccch-------HHHHHHHHHHHHHcC
Confidence 7899999999999887 4799999999854332 689999999998754
No 293
>PTZ00024 cyclin-dependent protein kinase; Provisional
Probab=96.80 E-value=0.0021 Score=62.15 Aligned_cols=57 Identities=12% Similarity=0.128 Sum_probs=41.7
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCc---------hhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWP---------KNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~---------~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||+||+|... +|+.||||++......... ......+.+|++++.+++|+.
T Consensus 15 ~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 81 (335)
T PTZ00024 15 AHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHEN 81 (335)
T ss_pred hcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcc
Confidence 67999999999999864 7999999998643221100 001236889999999999963
No 294
>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl
Probab=96.80 E-value=0.0019 Score=61.40 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=42.0
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
..||+|+||.||+|.-. +|+.||||++...... ......+.+|++++.+++|.+
T Consensus 18 ~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~ 72 (310)
T cd07865 18 AKIGQGTFGEVFKARHKKTKQIVALKKVLMENEK---EGFPITALREIKILQLLKHEN 72 (310)
T ss_pred EEeecCCCEEEEEEEECCCCcEEEEEEEeccCCc---CCchhHHHHHHHHHHhCCCCC
Confidence 78999999999999874 6899999998643221 112346778999999999974
No 295
>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r
Probab=96.80 E-value=0.0025 Score=59.84 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=39.2
Q ss_pred hhhcCCCCcEEEEEEe-CCCC----EEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGV----EIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~----~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|.. .+|+ .||+|++..... .....+|..|+..++++.|.
T Consensus 13 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~----~~~~~~~~~~~~~l~~l~h~ 69 (279)
T cd05111 13 KLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSG----RQTFQEITDHMLAMGSLDHA 69 (279)
T ss_pred cccCccCCcceEEEEEcCCCCceeeEEEEeecccccc----hHHHHHHHHHHHHHhcCCCC
Confidence 7899999999999987 3455 377787743221 23357899999999999986
No 296
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=96.79 E-value=0.0036 Score=59.74 Aligned_cols=54 Identities=22% Similarity=0.243 Sum_probs=42.3
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|... +++.||||++...... .....++|.+|++++..++|.
T Consensus 21 ~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~~e~~~l~~l~h~ 75 (308)
T cd06634 21 REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQ--SNEKWQDIIKEVRFLQKLRHP 75 (308)
T ss_pred HheeeCCCEEEEEEEEcCCCcEEEEEEEeccccc--ChHHHHHHHHHHHHHHhCCCC
Confidence 67999999999999964 6888999998642211 123356799999999999997
No 297
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=96.79 E-value=0.0011 Score=68.80 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=28.9
Q ss_pred HHhhhh--hhhcCCCCcEEEEEEeCC-----CCEEEEEEeee
Q 013931 370 ACEDFS--NVIGSSPIGTVYKGTLSN-----GVEIAVASVSV 404 (433)
Q Consensus 370 at~~f~--~~iG~G~fG~VYkg~l~~-----g~~VAVK~l~~ 404 (433)
..++|. +.||+|+||.||+|.+.+ +..||||++..
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~ 171 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATE 171 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecc
Confidence 345666 899999999999999854 68999999853
No 298
>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti
Probab=96.79 E-value=0.0024 Score=58.89 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=43.0
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++.. .+|+.||||++...... .....++.+|++++.+++|+.
T Consensus 6 ~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~ 60 (256)
T cd08218 6 KKIGEGSFGKAILVKSKEDGKQYVIKEINISKMS---PKEREESRKEVAVLSNMKHPN 60 (256)
T ss_pred EEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCC---hHHHHHHHHHHHHHHhCCCCC
Confidence 6799999999999886 47899999998643221 223568999999999999973
No 299
>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]
Probab=96.78 E-value=0.0012 Score=63.16 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=44.3
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|.||+|-+|.= ..|+.||||.++...-++ .+..-...+||++|+.++|.
T Consensus 59 etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkd--eqDlvhIRREIeIMSsLNHP 113 (668)
T KOG0611|consen 59 ETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKD--EQDLVHIRREIEIMSSLNHP 113 (668)
T ss_pred HHhcCCcccceeehhhccCCcEeehhhhhhhhccc--HHHHHHHHHHHHHHhhcCCC
Confidence 6799999999999875 579999999997655444 34455689999999999996
No 300
>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins. Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic
Probab=96.78 E-value=0.0017 Score=61.77 Aligned_cols=58 Identities=19% Similarity=0.350 Sum_probs=44.4
Q ss_pred hhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
++|. +.||+|+||.||+|+.. +|+.||||++......+ .....+.+|++++.+++|..
T Consensus 8 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~---~~~~~~~~e~~~l~~l~h~~ 68 (311)
T cd07866 8 RDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKD---GFPITALREIKILKKLKHPN 68 (311)
T ss_pred ccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCC---CcchhHHHHHHHHHhcCCCC
Confidence 4555 78999999999999874 68999999986433222 11356889999999999973
No 301
>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha. Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype
Probab=96.76 E-value=0.0026 Score=61.29 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=41.5
Q ss_pred hhhcCC--CCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSS--PIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G--~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
.+||+| +||+||++.. ++|+.||||++...... ....+.+.+|++++..++|.
T Consensus 4 ~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~e~~~l~~l~hp 59 (327)
T cd08227 4 TVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACT---NEMVTFLQGELHVSKLFNHP 59 (327)
T ss_pred hhccccccceEEEEEEeecccCcEEEEEEechhhcc---HHHHHHHHHHHHHHHhcCCC
Confidence 679999 7899999987 57899999999643221 22345788899999999996
No 302
>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5. Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the
Probab=96.76 E-value=0.002 Score=62.26 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=44.7
Q ss_pred hhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
++|. +.||+|+||.||+|... +|+.||||++...... ......+.+|+++|.+++|..
T Consensus 5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~ 65 (334)
T cd07855 5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDV---PTLAKRTLRELKILRHFKHDN 65 (334)
T ss_pred hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEecccccc---ccchHHHHHHHHHHHhcCCCC
Confidence 4454 78999999999999864 6999999999643221 123567889999999999974
No 303
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=96.75 E-value=0.0027 Score=60.21 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=42.2
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|+- .+|+.||||.+...... ....|.+|++++..++|..
T Consensus 26 ~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~-----~~~~~~~e~~~l~~~~h~~ 78 (296)
T cd06654 26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP-----KKELIINEILVMRENKNPN 78 (296)
T ss_pred EEecCCCCeEEEEEEECCCCcEEEEEEEecCCcc-----hHHHHHHHHHHHHhCCCCC
Confidence 6799999999999985 57899999998643322 2467999999999999974
No 304
>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=96.75 E-value=0.0025 Score=60.46 Aligned_cols=52 Identities=17% Similarity=0.289 Sum_probs=42.4
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||.|+||.||+|+- .+|+.||||.+..... .....|.+|++++..++|..
T Consensus 25 ~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~-----~~~~~~~~e~~~l~~l~h~~ 77 (296)
T cd06655 25 EKIGQGASGTVFTAIDVATGQEVAIKQINLQKQ-----PKKELIINEILVMKELKNPN 77 (296)
T ss_pred EEEecCCCeEEEEEEEcCCCcEEEEEEEecccC-----chHHHHHHHHHHHHhcCCCc
Confidence 6799999999999984 5799999999964322 12567999999999999973
No 305
>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1. Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto
Probab=96.75 E-value=0.0021 Score=59.93 Aligned_cols=54 Identities=13% Similarity=0.044 Sum_probs=42.5
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc-cC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI-SK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~-H~ 431 (433)
+.||+|+||.||+|+.. +|+.||||.+...... .....+++..|++++.+++ |+
T Consensus 7 ~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~~e~~~~~~l~~~~ 62 (280)
T cd05581 7 KIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLI--KEKKVKYVKIEKEVLTRLNGHP 62 (280)
T ss_pred eeecCCCceEEEEEEEcCCCCEEEEEEechHhcc--chHHHHHHHHHHHHHHhcccCC
Confidence 67999999999999985 7999999998542211 1233578999999999998 75
No 306
>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I
Probab=96.74 E-value=0.0015 Score=60.64 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=45.2
Q ss_pred HHhhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc-ccCC
Q 013931 370 ACEDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL-ISKC 432 (433)
Q Consensus 370 at~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l-~H~~ 432 (433)
++++|. +.||+|+||.||+|... +++.+|+|.+..... ...+|.+|++++.++ .|.+
T Consensus 4 ~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~------~~~~~~~e~~~l~~~~~h~~ 64 (275)
T cd06608 4 PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED------EEEEIKEEYNILRKYSNHPN 64 (275)
T ss_pred chhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch------hHHHHHHHHHHHHHhcCCCC
Confidence 456666 78999999999999985 678899999864222 246799999999998 5864
No 307
>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and
Probab=96.73 E-value=0.002 Score=62.04 Aligned_cols=53 Identities=11% Similarity=-0.038 Sum_probs=38.8
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhccc
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLIS 430 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H 430 (433)
+.||+|+||.||+|... +++.||||.+....... ......+..|.+++..+.|
T Consensus 6 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~~e~~~l~~~~~ 59 (323)
T cd05616 6 MVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQ--DDDVECTMVEKRVLALSGK 59 (323)
T ss_pred EEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhccC
Confidence 68999999999999875 57799999996432111 1224567888888887654
No 308
>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also
Probab=96.73 E-value=0.0019 Score=60.66 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=42.4
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +|+.||+|++...... ......+.+|++++.+++|..
T Consensus 6 ~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~---~~~~~~~~~ei~~l~~l~h~~ 60 (284)
T cd07839 6 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDD---EGVPSSALREICLLKELKHKN 60 (284)
T ss_pred EEecccCCeEEEEEEECCCCcEEEEEEeeccccc---ccCccchhHHHHHHHhcCCCC
Confidence 57999999999999874 6899999999643211 222467889999999999973
No 309
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=96.72 E-value=0.0015 Score=59.22 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHhhhhhhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhh
Q 013931 359 VPKLKRSELEAACEDFSNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQL 427 (433)
Q Consensus 359 ~~~~~~~el~~at~~f~~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~ 427 (433)
...|+-+.|+.. ..||.|.||+|+|-.. +.|+.+|||+++.... ...+++|+.|+++.-+
T Consensus 58 ~~~F~~~~Lqdl-----g~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~----~keq~rll~e~d~~mk 118 (361)
T KOG1006|consen 58 LHTFTSDNLQDL-----GEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNI----EKEQKRLLMEHDTVMK 118 (361)
T ss_pred ccccccchHHHH-----HHhcCCcchhhhhhhcCccCcEEEEEEeeeccc----hHHHHHHHHHHHHHHh
Confidence 345666666665 6799999999999665 5799999999975443 2346789999887643
No 310
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=96.72 E-value=0.0022 Score=66.84 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=43.6
Q ss_pred hhhcCCCCcEEEEEEeCCC-CEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc-cC
Q 013931 376 NVIGSSPIGTVYKGTLSNG-VEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI-SK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g-~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~-H~ 431 (433)
+.|.+|||+.||.+....+ ..+|+||+-.. ++...+...+||++|.+|. |+
T Consensus 43 ~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~-----de~~L~~v~~EI~~MK~L~gh~ 95 (738)
T KOG1989|consen 43 KVLAEGGFAQVYLAQDVKGGKKYALKRMYVN-----DEEALNAVKREIDIMKLLSGHK 95 (738)
T ss_pred EEEccCCcEEEEEEEecCCCceeeeeeeecC-----CHHHHHHHHHHHHHHHHhcCCC
Confidence 6799999999999999776 99999998532 2555789999999999988 76
No 311
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=96.72 E-value=0.0011 Score=62.58 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=45.6
Q ss_pred hhhh--hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++|. ++||+|+||+||...- +.|+..|.|.++....-. ....+...+|..+|.+++|.
T Consensus 25 ~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~--~~e~~~~~~Er~IL~~v~hP 85 (357)
T KOG0598|consen 25 DDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVE--KKEVRHTKAERNILSKIKHP 85 (357)
T ss_pred hheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhh--hhhHHHHHHHHHHHHhCCCC
Confidence 4566 8999999999998776 458889999997544322 22357789999999999996
No 312
>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=96.71 E-value=0.0024 Score=60.74 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=40.4
Q ss_pred hhhcCCCCcEEEEEEe--------CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc-ccCC
Q 013931 376 NVIGSSPIGTVYKGTL--------SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL-ISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l--------~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l-~H~~ 432 (433)
..||+|+||.||++.. .++..||||.+.... .....+++.+|+.++..+ +|..
T Consensus 21 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~----~~~~~~~~~~E~~~l~~l~~h~~ 82 (304)
T cd05101 21 KPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDA----TEKDLSDLVSEMEMMKMIGKHKN 82 (304)
T ss_pred ceeeccCCceEEEEEEeccCCCCCCcceeEEeeeccccc----chHHHHHHHHHHHHHHhhccCCC
Confidence 7899999999999974 235579999986322 123357899999999998 7863
No 313
>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.
Probab=96.71 E-value=0.0038 Score=58.04 Aligned_cols=57 Identities=19% Similarity=0.130 Sum_probs=41.7
Q ss_pred hhhcCCCCcEEEEEEeCC--CCEEEEEEeeecCCCC-----CchhHHHHHHHHHHHhhh-cccCC
Q 013931 376 NVIGSSPIGTVYKGTLSN--GVEIAVASVSVASAKD-----WPKNLEVQFRKKVIYQQL-LISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~--g~~VAVK~l~~~~~~~-----~~~~~~~~F~~Ev~~L~~-l~H~~ 432 (433)
+.||+|+||.||+|...+ ++.+|||.+....... .......++.+|+.++.+ ++|+.
T Consensus 6 ~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~ 70 (269)
T cd08528 6 EHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPN 70 (269)
T ss_pred hhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCC
Confidence 789999999999999865 6889999986432111 112335678899998875 77863
No 314
>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6. Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs
Probab=96.70 E-value=0.0024 Score=59.83 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=37.1
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHh-hhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQ-QLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L-~~l~H~ 431 (433)
+.||+|+||.||+++.. +|+.||||+++.... ...+.++..|++.+ ...+|.
T Consensus 7 ~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~~e~~~~~~~~~~~ 60 (283)
T cd06617 7 EELGRGAYGVVDKMRHVPTGTIMAVKRIRATVN----SQEQKRLLMDLDISMRSVDCP 60 (283)
T ss_pred EEecccCCeEEEEEEEcCCCcEEEEEEEecCCC----cHHHHHHHHHHHHHHHHcCCC
Confidence 67999999999999874 699999999864322 12245677777764 444543
No 315
>smart00090 RIO RIO-like kinase.
Probab=96.70 E-value=0.003 Score=57.98 Aligned_cols=55 Identities=18% Similarity=0.082 Sum_probs=40.1
Q ss_pred hhhcCCCCcEEEEEE--eCCCCEEEEEEeeecCCCCC-----------------ch--hHHHHHHHHHHHhhhccc
Q 013931 376 NVIGSSPIGTVYKGT--LSNGVEIAVASVSVASAKDW-----------------PK--NLEVQFRKKVIYQQLLIS 430 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~--l~~g~~VAVK~l~~~~~~~~-----------------~~--~~~~~F~~Ev~~L~~l~H 430 (433)
..||+|+||.||+|. ..+|+.||||.+........ .. .....+..|++.+.++.|
T Consensus 34 ~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~ 109 (237)
T smart00090 34 GCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYE 109 (237)
T ss_pred CeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999998 67999999999864321100 00 012346789999988875
No 316
>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with
Probab=96.69 E-value=0.0035 Score=57.68 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=42.5
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||++.. .+++.+|||++..... +.....+|.+|+++|.+++|.
T Consensus 6 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~~e~~~l~~~~~~ 59 (256)
T cd08220 6 RVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQM---TKDERLAAQNECQVLKLLSHP 59 (256)
T ss_pred EEecccCceEEEEEEEcCCCcEEEEEEEecccc---ccHHHHHHHHHHHHHhhCCCC
Confidence 6799999999999887 4788999999864321 223357899999999999986
No 317
>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the
Probab=96.67 E-value=0.0024 Score=60.93 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=42.4
Q ss_pred hhhcCCCCcEEEEEEeC---CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~---~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
..||+|+||.||+|... +|+.||||.+....... ......+.+|++++.+++|+.
T Consensus 6 ~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~ 63 (316)
T cd07842 6 GCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQY--TGISQSACREIALLRELKHEN 63 (316)
T ss_pred EEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccc--cCccHHHHHHHHHHHhcCCCC
Confidence 57999999999999985 47899999996432111 112467889999999999974
No 318
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=96.67 E-value=0.0034 Score=55.02 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=26.9
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeec
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVA 405 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~ 405 (433)
+.||+|+||.||+|...+|+.||||++...
T Consensus 3 ~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~ 32 (187)
T cd05119 3 GPIGTGKEADVYLALDGDGEPVAVKIYRTG 32 (187)
T ss_pred cccccccceeEEEEECCCCCEEEEEEEecC
Confidence 579999999999999988999999998643
No 319
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=96.66 E-value=0.003 Score=60.23 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=39.7
Q ss_pred hhhcCCCCcEEEEEEeC--------CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc-ccC
Q 013931 376 NVIGSSPIGTVYKGTLS--------NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL-ISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~--------~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l-~H~ 431 (433)
+.||+|+||.||++... +++.||||.+..... .....+|..|++++.++ +|.
T Consensus 24 ~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~----~~~~~~~~~e~~~l~~l~~h~ 84 (307)
T cd05098 24 KPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDAT----EKDLSDLISEMEMMKMIGKHK 84 (307)
T ss_pred eeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCC----hHHHHHHHHHHHHHHHhcCCC
Confidence 78999999999998752 345799999964321 22356799999999998 675
No 320
>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express
Probab=96.66 E-value=0.0031 Score=59.73 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=41.3
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
..||+|+||.||++... ++..||||++.... ......|.+|+..+.+++|.
T Consensus 28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~h~ 79 (292)
T cd06658 28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLRK-----QQRRELLFNEVVIMRDYHHE 79 (292)
T ss_pred hcccCCCCeEEEEEEECCCCCEEEEEEEecch-----HHHHHHHHHHHHHHHhCCCC
Confidence 56999999999999874 68899999985322 22356799999999999996
No 321
>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph
Probab=96.65 E-value=0.0019 Score=62.34 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=40.3
Q ss_pred hhhcCCCCcEEEEEEe----CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc-cC
Q 013931 376 NVIGSSPIGTVYKGTL----SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI-SK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l----~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~-H~ 431 (433)
+.||+|+||.||++.. .+|+.||||.+....... .......+..|+++|.+++ |.
T Consensus 6 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~ 65 (332)
T cd05614 6 KVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQ-KAKTVEHTRTERNVLEHVRQSP 65 (332)
T ss_pred EEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhh-hhhHHHHHHHHHHHHHhccCCC
Confidence 6799999999999875 368899999986422111 1222456899999999985 54
No 322
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=96.65 E-value=0.003 Score=61.62 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=44.4
Q ss_pred hhhh--hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.|. +.||+|+||.||+|.- .+|+.||||++..... ......++.+|++++.+++|.+
T Consensus 16 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~~ 76 (353)
T cd07850 16 KRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQ---NVTHAKRAYRELVLMKLVNHKN 76 (353)
T ss_pred cceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCcccc---ChhHHHHHHHHHHHHHhcCCCC
Confidence 4455 7899999999999986 4789999999853211 1223467889999999999974
No 323
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.65 E-value=0.0013 Score=69.39 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=68.1
Q ss_pred CCCEEEEEecCCCCc-ccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCC-CCchhccCCCCCcE
Q 013931 72 DGKVVNLNLKDLCLE-GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG-PLPNDLGINHSLTI 149 (433)
Q Consensus 72 ~~~l~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~ 149 (433)
-++|+.|.+.+-.+. ..+-.-..++++|..||+++.+++. + ..++.|++|+.|.+.+=.|.. .--..+.+|++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 356777777776653 2223335567778888888877763 3 567777777777776655541 11124567788888
Q ss_pred EEccCCCCcccC--ch----hhhCCCCCCEEEccCCCCCCC
Q 013931 150 LLLDNNDFVGSL--SP----EIYKLQVLSESQVDEGQLSSA 184 (433)
Q Consensus 150 L~l~~N~l~~~~--p~----~l~~l~~L~~L~l~~n~l~~~ 184 (433)
||+|.......- .. .-..|++|+.||.+++.+...
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 888776554211 11 122477888888887766644
No 324
>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.
Probab=96.64 E-value=0.0039 Score=57.44 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=42.3
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
++||+|+||.||++.-. +++.||||++..... .....+.+.+|++++.+++|..
T Consensus 6 ~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~~~e~~~l~~l~~~~ 60 (257)
T cd08223 6 RVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNA---SRRERKAAEQEAQLLSQLKHPN 60 (257)
T ss_pred EEecCCCCeEEEEEEEcCCCcEEEEEEEehhhc---CHHHHHHHHHHHHHHHhCCCCC
Confidence 67999999999998864 578899999964221 1223567999999999999864
No 325
>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a
Probab=96.64 E-value=0.0026 Score=60.57 Aligned_cols=55 Identities=13% Similarity=0.045 Sum_probs=42.7
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++... .++.||||.+....... ......|.+|++++..++|.+
T Consensus 7 ~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~ 62 (305)
T cd05609 7 KLISNGAYGAVYLVRHKETRQRFAMKKINKQNLIL--RNQIQQVFVERDILTFAENPF 62 (305)
T ss_pred eEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhh--HHHHHHHHHHHHHHHhCCCCC
Confidence 78999999999999874 57899999986432211 223467999999999999974
No 326
>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
Probab=96.62 E-value=0.0042 Score=57.62 Aligned_cols=56 Identities=25% Similarity=0.368 Sum_probs=42.5
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCC----chhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDW----PKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~----~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
..||+|+||.||+|.. .+++.||||.+........ .......|.+|++++.+++|.
T Consensus 6 ~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~ 66 (267)
T cd06628 6 ALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHE 66 (267)
T ss_pred ceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5799999999999986 4688999999864432221 112235799999999999996
No 327
>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa
Probab=96.61 E-value=0.0045 Score=57.02 Aligned_cols=53 Identities=11% Similarity=0.136 Sum_probs=41.9
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++||+|+||.||.+.- .+|+.||+|++..... +....++|.+|+++|.+++|+
T Consensus 6 ~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~~~e~~~l~~~~h~ 59 (256)
T cd08221 6 RVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRL---SEKERRDALNEIVILSLLQHP 59 (256)
T ss_pred eEecccCCceEEEEEEcCCCcEEEEEEEeeccc---chhHHHHHHHHHHHHHhCCCC
Confidence 6899999998887665 4689999999864321 233467899999999999996
No 328
>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati
Probab=96.61 E-value=0.0025 Score=61.74 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=41.9
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|.- .+|+.||||++...... .....++.+|++++..++|.
T Consensus 11 ~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~ 64 (337)
T cd07858 11 KPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDN---RIDAKRTLREIKLLRHLDHE 64 (337)
T ss_pred EEeccCCCeEEEEEEecCCCCeEEEEEecccccc---cchhHHHHHHHHHHHhcCCC
Confidence 6899999999999986 46899999998643211 22246788999999999996
No 329
>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK
Probab=96.60 E-value=0.0028 Score=61.57 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=44.7
Q ss_pred Hhhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 371 CEDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 371 t~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
.++|. ..||+|+||.||+|... +++.||||++..... ......++.+|++++.+++|..
T Consensus 14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~~ 75 (343)
T cd07851 14 PDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQ---SAIHAKRTYRELRLLKHMDHEN 75 (343)
T ss_pred cCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccc---hhhHHHHHHHHHHHHHhccCCC
Confidence 34454 78999999999999985 688999999853211 1223467889999999999873
No 330
>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They
Probab=96.60 E-value=0.0043 Score=56.92 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=43.4
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++... +++.||||++..... ......++.+|++++.+++|..
T Consensus 6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~~e~~~l~~l~~~~ 60 (258)
T cd08215 6 KQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNM---SEKEREDALNEVKILKKLNHPN 60 (258)
T ss_pred eeeccCCCeEEEEEEEcCCCcEEEEEEeecccC---ChHHHHHHHHHHHHHHhcCCCC
Confidence 67999999999999985 588999999964322 1234678999999999999874
No 331
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.60 E-value=0.0045 Score=60.57 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=64.9
Q ss_pred CCCEEEEEecCCCCcccCcccccCCCCCcEEEeeCC-cccccCccccCCCCcCceeecccccCC--CCCchhccCC----
Q 013931 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNN-SFSGIIPEGFGELEELEVLDFGHNNFS--GPLPNDLGIN---- 144 (433)
Q Consensus 72 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~ls~N~l~--~~~p~~~~~l---- 144 (433)
..+|++|+++++.--..+|..+. .+|++|++++| .+. .+|. +|+.|+++.|... +.+|.++..|
T Consensus 71 P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPssLk~L~I~~ 141 (426)
T PRK15386 71 PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPNGLTSLSINS 141 (426)
T ss_pred CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcchHhheeccc
Confidence 35799999988544346666553 58999999988 554 5664 3555666655431 3566555433
Q ss_pred --------------CCCcEEEccCCCCcccCchhhhCCCCCCEEEccCCC
Q 013931 145 --------------HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQ 180 (433)
Q Consensus 145 --------------~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~l~~n~ 180 (433)
.+|++|++++|... .+|..+- .+|+.|+++.|.
T Consensus 142 ~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 142 YNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred cccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 37899999988866 4554433 589999998873
No 332
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=96.59 E-value=0.0017 Score=64.62 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHhhhhhhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 358 GVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 358 ~~~~~~~~el~~at~~f~~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.-.+.|++|.+. +-||.|+.|.||.|.| .++.|||||++ ..=+.+|+.|.+++|.
T Consensus 117 e~WeiPFe~IsEL-----eWlGSGaQGAVF~Grl-~netVAVKKV~------------elkETdIKHLRkLkH~ 172 (904)
T KOG4721|consen 117 ELWEIPFEEISEL-----EWLGSGAQGAVFLGRL-HNETVAVKKVR------------ELKETDIKHLRKLKHP 172 (904)
T ss_pred hhccCCHHHhhhh-----hhhccCcccceeeeec-cCceehhHHHh------------hhhhhhHHHHHhccCc
Confidence 3445677777665 6799999999999999 88899999984 3346789999999996
No 333
>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]
Probab=96.58 E-value=0.0024 Score=60.24 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=42.2
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.|.+++- .+|+.|||||+...-.. ....+.-.+|+++|.+++|.
T Consensus 28 ~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~---~~~akRtlRElklLr~~~He 81 (359)
T KOG0660|consen 28 EPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFEN---QIDAKRTLRELKLLRHLRHE 81 (359)
T ss_pred ccccCcceeeEEEEEEcCCCCEeehhhhhhhhhc---hHHHHHHHHHHHHHHHhcCC
Confidence 5699999999999987 47899999999632221 23356778999999999997
No 334
>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.
Probab=96.55 E-value=0.0016 Score=52.72 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=37.5
Q ss_pred hhhh-hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhh
Q 013931 372 EDFS-NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQL 427 (433)
Q Consensus 372 ~~f~-~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~ 427 (433)
..|+ +-||.|+.|.||+|+|.+|+.||||...+. -...+...+++|..
T Consensus 12 ~~fd~~PlasASiaQVh~a~l~~g~~VaVKV~rP~--------i~~~i~~Dl~~l~~ 60 (119)
T PF03109_consen 12 DEFDPEPLASASIAQVHRARLKDGEEVAVKVQRPG--------IEEQIEADLRILRR 60 (119)
T ss_pred HHCCcchhhheehhhheeeeecccchhhhhhcchH--------HHHHHHHHHHHHHH
Confidence 3455 789999999999999999999999998632 24566666666654
No 335
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.00061 Score=62.59 Aligned_cols=87 Identities=21% Similarity=0.261 Sum_probs=52.6
Q ss_pred CCCCCcEEEeeCCcccc--cCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEccCCCCccc-CchhhhCCCCC
Q 013931 95 SLTHIKSIILRNNSFSG--IIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGS-LSPEIYKLQVL 171 (433)
Q Consensus 95 ~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~l~~l~~L 171 (433)
..+.++.|||.+|.|+. .+-.-+.+|+.|++|+|+.|.+...|-..-..+.+|++|-|.+..+... ....+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34667777777777763 2333455677777778877777632211112445677777777665432 23345667777
Q ss_pred CEEEccCCCC
Q 013931 172 SESQVDEGQL 181 (433)
Q Consensus 172 ~~L~l~~n~l 181 (433)
+.|+++.|.+
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 7777777744
No 336
>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=96.54 E-value=0.0029 Score=61.34 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=45.2
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
.+||.|..++||+|.. +.++.||||++....+.. ..++.++|+.+|+.++|..
T Consensus 32 e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~----~ld~l~kE~~~msl~~HPN 85 (516)
T KOG0582|consen 32 EVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNN----DLDALRKEVQTMSLIDHPN 85 (516)
T ss_pred EEEeccceeEeeeeeecccCCEEEEEEeehhhhhh----hHHHHHHHHHHhhhcCCCC
Confidence 6899999999999986 788999999998655543 2588999999999999973
No 337
>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it
Probab=96.53 E-value=0.004 Score=58.94 Aligned_cols=52 Identities=21% Similarity=0.185 Sum_probs=40.2
Q ss_pred hhhcCCCCcEEEEEEeCC-CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc-cC
Q 013931 376 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI-SK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~-g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~-H~ 431 (433)
+.||+|+||.||+|...+ |+.||||+++.... .....++..|++++.+.+ |+
T Consensus 21 ~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~----~~~~~~~~~e~~~~~~~~~~~ 74 (296)
T cd06618 21 GEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGN----KEENKRILMDLDVVLKSHDCP 74 (296)
T ss_pred eEeeccCCeEEEEEEECCCCeEEEEEEEeccCC----hHHHHHHHHHHHHHHhccCCC
Confidence 789999999999999965 89999999964322 122467888888887765 64
No 338
>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph
Probab=96.51 E-value=0.0034 Score=59.16 Aligned_cols=53 Identities=15% Similarity=0.163 Sum_probs=40.0
Q ss_pred hhhcCCCCcEEEEEEe----CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc
Q 013931 376 NVIGSSPIGTVYKGTL----SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI 429 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l----~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~ 429 (433)
+.||+|+||.||++.. ++|+.||||++....... .....+.+.+|+++|.+++
T Consensus 6 ~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~-~~~~~~~~~~e~~~l~~l~ 62 (290)
T cd05613 6 KVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQ-KAKTTEHTRTERQVLEHIR 62 (290)
T ss_pred eeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhh-cchHHHHHHHHHHHHHhcc
Confidence 6799999999999886 478999999986432111 1223467899999999985
No 339
>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast
Probab=96.50 E-value=0.0057 Score=56.05 Aligned_cols=54 Identities=22% Similarity=0.308 Sum_probs=43.2
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... +++.||||++...... .....+|.+|++++.+++|..
T Consensus 6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~ 60 (254)
T cd06627 6 DLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIK---EEALKSIMQEIDLLKNLKHPN 60 (254)
T ss_pred eEEcccCCeEEEEEEEcCCCcEEEEEEecccccC---HHHHHHHHHHHHHHHhCCCCC
Confidence 67999999999999875 6789999999643321 233578999999999999873
No 340
>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N. Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved
Probab=96.49 E-value=0.0034 Score=60.38 Aligned_cols=55 Identities=11% Similarity=0.054 Sum_probs=37.9
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHh---hhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQ---QLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L---~~l~H~~ 432 (433)
+.||+|+||.||+|... +|+.||||+++...... ....+.+..|++++ .+++|.+
T Consensus 5 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~l~~e~~~~~~~~~l~hp~ 63 (324)
T cd05589 5 AVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIA--RDEVESLMCEKRIFETANSERHPF 63 (324)
T ss_pred EEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHHhccccCCCC
Confidence 57999999999999874 68999999996432111 11234566676554 5677863
No 341
>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and
Probab=96.48 E-value=0.0047 Score=59.41 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=43.3
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|... .|+.||||++..... +....+.|.+|++++..++|.+
T Consensus 6 ~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~---~~~~~~~~~~e~~~l~~l~~~~ 60 (330)
T cd07834 6 KPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFD---DLIDAKRILREIKLLRHLRHEN 60 (330)
T ss_pred eeecCCCCeEEEEEEeCCCCcEEEEEeeccccc---cchhhhhHHHHHHHHHhcCCcc
Confidence 67999999999999975 489999999964321 1223578999999999999874
No 342
>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the
Probab=96.48 E-value=0.0048 Score=57.63 Aligned_cols=54 Identities=15% Similarity=0.261 Sum_probs=43.0
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|+.. +++.||||++...... ......+..|++++.+++|.+
T Consensus 5 ~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~~e~~~l~~~~~~~ 59 (282)
T cd07829 5 EKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEE---EGIPSTALREISLLKELKHPN 59 (282)
T ss_pred hcccccCcceEEEeeecCCCcEEEEEEecccccc---ccccHHHHHHHHHHHhcCCCC
Confidence 57999999999999986 4999999999754311 222467899999999999874
No 343
>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati
Probab=96.47 E-value=0.0043 Score=57.13 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=42.4
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++.-. +|+.+|+|.+..... .....++.+|++++.+++|..
T Consensus 6 ~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~----~~~~~~~~~e~~~l~~l~h~~ 59 (255)
T cd08219 6 RVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKS----SSAVEDSRKEAVLLAKMKHPN 59 (255)
T ss_pred EEeeccCCeEEEEEEEcCCCceEEEEEEEcCcc----hHHHHHHHHHHHHHHhCCCCC
Confidence 67999999999999864 688999999863322 223567999999999999974
No 344
>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta. Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig
Probab=96.44 E-value=0.0077 Score=57.99 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=41.4
Q ss_pred hhhcCC--CCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSS--PIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G--~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
..||+| +||+||++.- .+|+.||||.+..... .....+.|.+|+.++..++|.+
T Consensus 4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~e~~~~~~l~h~n 60 (328)
T cd08226 4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENC---TEEHLKALQNEVVLSHFFRHPN 60 (328)
T ss_pred HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccC---CHHHHHHHHHHHHHHHhCCCCC
Confidence 357777 8999999986 4799999999864322 1233578999999999999975
No 345
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=96.40 E-value=0.0055 Score=57.72 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=41.5
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|.. .+++.||||++.... ....+.|.+|+.++..++|.
T Consensus 25 ~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~-----~~~~~~~~~e~~~l~~~~h~ 76 (285)
T cd06648 25 VKIGEGSTGIVCIATDKSTGRQVAVKKMDLRK-----QQRRELLFNEVVIMRDYQHP 76 (285)
T ss_pred eEeccCCCeEEEEEEECCCCCEEEEEEEeccc-----hhHHHHHHHHHHHHHHcCCC
Confidence 7899999999999986 478999999985322 22256799999999999986
No 346
>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou
Probab=96.40 E-value=0.0063 Score=57.15 Aligned_cols=53 Identities=30% Similarity=0.360 Sum_probs=38.1
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc---ccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL---ISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l---~H~ 431 (433)
+.||+|+||.||+|... +|+.||||.+......+ ....++.+|++++..+ +|.
T Consensus 6 ~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~---~~~~~~~~e~~~l~~l~~~~h~ 62 (288)
T cd07863 6 AEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNED---GLPLSTVREVALLKRLEAFDHP 62 (288)
T ss_pred eEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCC---CCchHHHHHHHHHHHhhhcCCC
Confidence 57999999999999874 68999999986533221 1134567777777665 565
No 347
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.39 E-value=0.0015 Score=68.91 Aligned_cols=108 Identities=16% Similarity=0.252 Sum_probs=80.4
Q ss_pred CCEEEEEecCCCCccc-Cccc-ccCCCCCcEEEeeCCcccc-cCccccCCCCcCceeecccccCCCCCchhccCCCCCcE
Q 013931 73 GKVVNLNLKDLCLEGT-LAPE-IQSLTHIKSIILRNNSFSG-IIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTI 149 (433)
Q Consensus 73 ~~l~~L~L~~n~l~~~-~p~~-l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 149 (433)
.+|++||+++...... =|.. -..|++|+.|.+.+=.+.. .+-.-..++++|..||+|+..++ .+ ..+++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 4789999988765421 1122 2457999999999876642 23344568899999999999998 44 78899999999
Q ss_pred EEccCCCCcc-cCchhhhCCCCCCEEEccCCCCC
Q 013931 150 LLLDNNDFVG-SLSPEIYKLQVLSESQVDEGQLS 182 (433)
Q Consensus 150 L~l~~N~l~~-~~p~~l~~l~~L~~L~l~~n~l~ 182 (433)
|.+.+=.|.. ..=..+.+|++|++||++.....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 9988877762 11236889999999999987665
No 348
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=96.39 E-value=0.0034 Score=68.23 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=44.4
Q ss_pred hhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.|. ..||+|+||+||++... .+..||+|.+..... .......|..|+.+|.+++|..
T Consensus 13 ~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l---~e~~~~~~~~EI~IL~~L~HPN 73 (1021)
T PTZ00266 13 NEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGL---KEREKSQLVIEVNVMRELKHKN 73 (1021)
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEecccc---CHHHHHHHHHHHHHHHHcCCCC
Confidence 4444 78999999999999874 567889998864321 1333577999999999999974
No 349
>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They
Probab=96.36 E-value=0.0068 Score=56.64 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=43.1
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||.|++|.||++... +|+.+|+|++...... ......+..|+++|.+++|.+
T Consensus 5 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~ 59 (283)
T cd05118 5 GKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFES---EGIPKTALREIKLLKELNHPN 59 (283)
T ss_pred eeeecCCCceEEEEEcCCCCcEEEEEEecccccc---chhHHHHHHHHHHHHHhcCCC
Confidence 56999999999999875 7889999998643322 223578999999999999875
No 350
>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both
Probab=96.35 E-value=0.0061 Score=57.10 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=39.6
Q ss_pred hhhcCCCCcEEEEEEeCC-CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc---ccCC
Q 013931 376 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL---ISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~-g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l---~H~~ 432 (433)
+.||+|+||.||+|+..+ |+.||||++...... .....++.+|++++.++ .|.+
T Consensus 5 ~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~~~e~~~l~~l~~~~h~~ 62 (287)
T cd07838 5 AEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSE---EGIPLSTLREIALLKQLESFEHPN 62 (287)
T ss_pred EEecccCceEEEEEEECCCCCEEEEEEecccccc---chhhhhHHHHHHHHHHhhccCCCC
Confidence 679999999999999864 899999999643321 11245677888877665 4763
No 351
>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ
Probab=96.35 E-value=0.006 Score=56.30 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=42.1
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|... +++.+|||.+...... ..+++.+|++++.+++|.
T Consensus 9 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~-----~~~~~~~e~~~l~~~~h~ 60 (262)
T cd06613 9 QRIGSGTYGDVYKARDIATGELVAIKVIKLEPGD-----DFEIIQQEISMLKECRHP 60 (262)
T ss_pred EEecCCCceEEEEeEecCCCCEEEEEEEEcCchh-----hHHHHHHHHHHHHhCCCC
Confidence 67999999999999874 5788999998643322 357899999999999996
No 352
>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines
Probab=96.34 E-value=0.0044 Score=58.34 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=40.2
Q ss_pred hhhcCCCCcEEEEEEe----CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc-cC
Q 013931 376 NVIGSSPIGTVYKGTL----SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI-SK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l----~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~-H~ 431 (433)
+.||+|+||.||++.. .+++.||||.+....... .......|.+|++++.+++ |.
T Consensus 6 ~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~-~~~~~~~~~~E~~~l~~~~~~~ 65 (288)
T cd05583 6 RVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQ-KAKTAEHTRTERQVLEAVRRCP 65 (288)
T ss_pred EEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHh-hhhHHHHHHHHHHHHHhccCCc
Confidence 6799999999999875 367899999986322111 1222467999999999995 54
No 353
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=96.32 E-value=0.0039 Score=61.70 Aligned_cols=60 Identities=22% Similarity=0.184 Sum_probs=43.2
Q ss_pred Hhhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 371 CEDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 371 t~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
.++|. .+||+||||.||.++-. .|...|.|+|+...-.. ..+..-..+|=.+|....+.|
T Consensus 140 ~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~--~~Qv~hV~aERdiL~~~ds~~ 202 (550)
T KOG0605|consen 140 LDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLK--KNQVEHVRAERDILAEVDSPW 202 (550)
T ss_pred cccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHh--hhhHHHHHHHHHHhhhcCCCc
Confidence 45566 88999999999998875 58999999997433211 222455778888887766554
No 354
>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains. Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an
Probab=96.31 E-value=0.0073 Score=55.45 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=42.4
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++.- .+|+.+|||++..... ......++..|++++.+++|+.
T Consensus 6 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~~e~~~l~~l~~~~ 60 (256)
T cd08530 6 KKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSM---SQKEREDAVNEIRILASVNHPN 60 (256)
T ss_pred eeecCCCceeEEEEEECCCCCEEEEEEEehhhc---cHHHHHHHHHHHHHHHhCCCCC
Confidence 6799999999999875 4788999999864322 1233567899999999999973
No 355
>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=96.31 E-value=0.0065 Score=58.08 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=39.4
Q ss_pred hhhcCCCCcEEEEEEe--------CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc-ccC
Q 013931 376 NVIGSSPIGTVYKGTL--------SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL-ISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l--------~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l-~H~ 431 (433)
+.||+|+||.||++.- .+...||||+++.... .....+|.+|++++.++ +|.
T Consensus 18 ~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~----~~~~~~~~~E~~~l~~l~~h~ 78 (314)
T cd05099 18 KPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNAT----DKDLADLISEMELMKLIGKHK 78 (314)
T ss_pred eeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCC----hHHHHHHHHHHHHHHhccCCC
Confidence 7899999999999874 1345799999863221 23356799999999988 476
No 356
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.00096 Score=61.34 Aligned_cols=86 Identities=21% Similarity=0.195 Sum_probs=66.2
Q ss_pred CCEEEEEecCCCCcc--cCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCC-CchhccCCCCCcE
Q 013931 73 GKVVNLNLKDLCLEG--TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP-LPNDLGINHSLTI 149 (433)
Q Consensus 73 ~~l~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~~~~l~~L~~ 149 (433)
.+|..|||..|.|+. .+...+.+|+.|+.|+|+.|.+...|...-..+.+|++|-|.+..+... .-..+..++.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 478999999999984 4555688999999999999999855443224678999999998887643 2234667888899
Q ss_pred EEccCCCCc
Q 013931 150 LLLDNNDFV 158 (433)
Q Consensus 150 L~l~~N~l~ 158 (433)
|.++.|++.
T Consensus 151 lHmS~N~~r 159 (418)
T KOG2982|consen 151 LHMSDNSLR 159 (418)
T ss_pred hhhccchhh
Confidence 999888554
No 357
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=96.25 E-value=0.0071 Score=58.41 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=39.1
Q ss_pred hhhcCCCCcEEEEEEeC--------CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc-ccC
Q 013931 376 NVIGSSPIGTVYKGTLS--------NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL-ISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~--------~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l-~H~ 431 (433)
+.||+|+||.||++... .+..||||.+.... .....++|.+|++++.++ +|.
T Consensus 18 ~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~~E~~~l~~l~~h~ 78 (334)
T cd05100 18 KPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDA----TDKDLSDLVSEMEMMKMIGKHK 78 (334)
T ss_pred ceeccccCCcEEEEEEeccCCccCCcceeEEEEEccccc----CHHHHHHHHHHHHHHHhhcCCC
Confidence 78999999999999742 23468999886322 123357899999999999 685
No 358
>PHA03209 serine/threonine kinase US3; Provisional
Probab=96.25 E-value=0.0037 Score=61.14 Aligned_cols=50 Identities=8% Similarity=0.026 Sum_probs=38.9
Q ss_pred hhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
.+|. +.||+|+||.||+|... .++.||+|.... ..+..|+.+|.+++|.+
T Consensus 66 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~-----------~~~~~E~~~l~~l~h~~ 118 (357)
T PHA03209 66 LGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQK-----------GTTLIEAMLLQNVNHPS 118 (357)
T ss_pred cCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCc-----------cccHHHHHHHHhCCCCC
Confidence 3455 78999999999999985 467899987431 23457999999999974
No 359
>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co
Probab=96.22 E-value=0.0071 Score=58.37 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=40.3
Q ss_pred hhhcCCCCcEEEEEEeC-C--CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc-cC
Q 013931 376 NVIGSSPIGTVYKGTLS-N--GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI-SK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~--g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~-H~ 431 (433)
+.||+|+||.||++... + ++.||||++...... ....+++.+|++++.+++ |+
T Consensus 6 ~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~~~E~~~l~~l~~h~ 62 (332)
T cd07857 6 KELGQGAYGIVCSARNAETSEEETVAIKKITNVFSK---KILAKRALRELKLLRHFRGHK 62 (332)
T ss_pred EEccccCCeEEEEEEeCCCCcCceEEEEEecccccc---chhHHHHHHHHHHHHHhcCCC
Confidence 67999999999999974 3 778999998632211 223567899999999884 64
No 360
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=96.20 E-value=0.004 Score=59.43 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=42.3
Q ss_pred hhhcCCCCcEEEEEEe------CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL------SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l------~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
.++-+|.||.||+|.+ .|-+.|-||.++.. .++.+..-|..|--+|-.+.|+.
T Consensus 290 ~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~----AS~iQv~~~L~es~lly~~sH~n 348 (563)
T KOG1024|consen 290 CLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQH----ASQIQVNLLLQESMLLYGASHPN 348 (563)
T ss_pred hhhhcCchhheeeeeecccCCcchHHHHHHHHHHhc----ccHHHHHHHHHHHHHHhcCcCCC
Confidence 6788999999999965 45567889998743 33566778999999999999973
No 361
>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check
Probab=96.18 E-value=0.009 Score=55.16 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=40.1
Q ss_pred hhhcCCCCcEEEEEEeCC-CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~-g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||++.... +..+++|.++.....+.......++..|+.++.+++|+.
T Consensus 6 ~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~ 63 (260)
T cd08222 6 QRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPA 63 (260)
T ss_pred eeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCc
Confidence 679999999999988643 445666666543322222333567889999999999974
No 362
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.16 E-value=0.00016 Score=64.09 Aligned_cols=81 Identities=20% Similarity=0.197 Sum_probs=40.8
Q ss_pred CEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEcc
Q 013931 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (433)
Q Consensus 74 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~ 153 (433)
+++.||++.|++- .+...|.-++.|..|+++.|.+. .+|..++.+..+..+++.+|..+ ..|.+++.++.++++++.
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 4555555555544 33333444455555555555554 45555555555555555555544 455555555555555555
Q ss_pred CCCC
Q 013931 154 NNDF 157 (433)
Q Consensus 154 ~N~l 157 (433)
.|.|
T Consensus 120 ~~~~ 123 (326)
T KOG0473|consen 120 KTEF 123 (326)
T ss_pred cCcc
Confidence 5443
No 363
>PHA03207 serine/threonine kinase US3; Provisional
Probab=96.15 E-value=0.0056 Score=60.67 Aligned_cols=47 Identities=11% Similarity=0.120 Sum_probs=37.9
Q ss_pred hhhcCCCCcEEEEEEeC---CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS---NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~---~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
..||+|+||.||++... .+..||||.+.. .+.+.+|+++|.+++|+.
T Consensus 98 ~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~----------~~~~~~E~~il~~l~h~~ 147 (392)
T PHA03207 98 SSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTG----------GKTPGREIDILKTISHRA 147 (392)
T ss_pred EeecCCCCeEEEEEEEcCCccceeEEEEeccc----------cccHHHHHHHHHhcCCCC
Confidence 67999999999999763 357799998842 135678999999999974
No 364
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.13 E-value=0.00011 Score=65.04 Aligned_cols=90 Identities=18% Similarity=0.191 Sum_probs=81.2
Q ss_pred cccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEccCCCCcccCchhhhCCCCC
Q 013931 92 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 171 (433)
Q Consensus 92 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L 171 (433)
.+......+.||++.|++- .+-..|..++.|..||++.|.+. .+|..++.+..+..+++.+|..+ ..|..++.++.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4778889999999999987 56678888999999999999998 89999999999999999999998 899999999999
Q ss_pred CEEEccCCCCCCC
Q 013931 172 SESQVDEGQLSSA 184 (433)
Q Consensus 172 ~~L~l~~n~l~~~ 184 (433)
+++++.+|.|+..
T Consensus 114 k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 114 KKNEQKKTEFFRK 126 (326)
T ss_pred chhhhccCcchHH
Confidence 9999999997643
No 365
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=96.12 E-value=0.0057 Score=61.89 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=39.5
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI 429 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~ 429 (433)
+.||+|.||.|-|+.=. .++.||||.++.. +...++=..||.+|..++
T Consensus 192 e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~------k~f~~Q~~~Ei~iL~~ln 240 (586)
T KOG0667|consen 192 EVLGKGSFGQVVKAYDHKTGEIVAIKIIKNK------KRFLRQAQIEIRILELLN 240 (586)
T ss_pred EEecccccceeEEEEecCCCcEEEEEeeccC------hHHHHHHHHHHHHHHHHh
Confidence 78999999999999854 5899999999642 223577889999999987
No 366
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.00055 Score=62.32 Aligned_cols=79 Identities=23% Similarity=0.248 Sum_probs=64.4
Q ss_pred eC-CCCEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCcc--ccCCCCcCceeecccccCCCCCchh-----c
Q 013931 70 CS-DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPE--GFGELEELEVLDFGHNNFSGPLPND-----L 141 (433)
Q Consensus 70 C~-~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~ls~N~l~~~~p~~-----~ 141 (433)
|. ...|+.|.|+-|.|+..-| +..+++|++|+|..|.|. .+.+ -+.++++|+.|.|..|.-.|.-+.. +
T Consensus 37 c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 44 6789999999999985433 889999999999999998 4443 5678999999999999998776653 5
Q ss_pred cCCCCCcEEE
Q 013931 142 GINHSLTILL 151 (433)
Q Consensus 142 ~~l~~L~~L~ 151 (433)
.-|++|+.||
T Consensus 114 R~LPnLkKLD 123 (388)
T KOG2123|consen 114 RVLPNLKKLD 123 (388)
T ss_pred HHcccchhcc
Confidence 5678888875
No 367
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.02 E-value=0.003 Score=34.40 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=8.0
Q ss_pred CcEEEeeCCcccccCcccc
Q 013931 99 IKSIILRNNSFSGIIPEGF 117 (433)
Q Consensus 99 L~~L~L~~N~l~~~~p~~~ 117 (433)
|++|||++|+|+ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444444444444 344433
No 368
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.98 E-value=0.0025 Score=34.70 Aligned_cols=20 Identities=35% Similarity=0.713 Sum_probs=11.3
Q ss_pred cCceeecccccCCCCCchhcc
Q 013931 122 ELEVLDFGHNNFSGPLPNDLG 142 (433)
Q Consensus 122 ~L~~L~ls~N~l~~~~p~~~~ 142 (433)
+|++|||++|+|+ .+|.+|+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3556666666666 5555544
No 369
>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.97 E-value=0.01 Score=58.14 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=40.7
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc-cC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI-SK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~-H~ 431 (433)
+.||+|.||+||.|.- ..|+.||||.+.................+|+.+|.+++ |+
T Consensus 23 ~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~Hp 80 (370)
T KOG0583|consen 23 RTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHP 80 (370)
T ss_pred eeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCC
Confidence 7899999999999965 47899999976543211111122455678999999999 75
No 370
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=95.89 E-value=0.0088 Score=60.98 Aligned_cols=52 Identities=10% Similarity=0.103 Sum_probs=40.0
Q ss_pred hhhcCCCCcEEEEEEeC-C-CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-N-GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~-g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||+|+||.||+|.-. + ++.||+|++.... ......+.+|+++|..++|.+
T Consensus 73 ~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~-----~~~~~~~~~E~~~l~~l~Hpn 126 (478)
T PTZ00267 73 TLVGRNPTTAAFVATRGSDPKEKVVAKFVMLND-----ERQAAYARSELHCLAACDHFG 126 (478)
T ss_pred EEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCC-----HHHHHHHHHHHHHHHhCCCCC
Confidence 78999999999998753 3 6778888764221 223467889999999999974
No 371
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=95.82 E-value=0.021 Score=58.51 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=27.1
Q ss_pred hhhcCCCCcEEEEEEeCC-CCEEEEEEeee
Q 013931 376 NVIGSSPIGTVYKGTLSN-GVEIAVASVSV 404 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~-g~~VAVK~l~~ 404 (433)
+.||.|++|.||+|++.+ |+.||||.+.+
T Consensus 125 ~PlasaSiaQVh~A~l~~~G~~VAVKV~rP 154 (537)
T PRK04750 125 KPLASASIAQVHFARLKDNGREVVVKVLRP 154 (537)
T ss_pred hhhcCCCccEEEEEEECCCCCEEEEEEeCc
Confidence 689999999999999988 99999999974
No 372
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.73 E-value=0.0089 Score=54.48 Aligned_cols=110 Identities=15% Similarity=0.243 Sum_probs=73.9
Q ss_pred CCEEEEEecCCCCccc----CcccccCCCCCcEEEeeCCccc---ccCc-------cccCCCCcCceeecccccCCCCCc
Q 013931 73 GKVVNLNLKDLCLEGT----LAPEIQSLTHIKSIILRNNSFS---GIIP-------EGFGELEELEVLDFGHNNFSGPLP 138 (433)
Q Consensus 73 ~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~---~~~p-------~~~~~l~~L~~L~ls~N~l~~~~p 138 (433)
..++.++||+|.|... +...+.+-.+|+..+++.-... ..++ ..+-++++|+..+||.|.|.-..|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4688999999988743 3444666678888887764322 1122 235568889999999998887777
Q ss_pred hhc----cCCCCCcEEEccCCCCcc----cCchh---------hhCCCCCCEEEccCCCCC
Q 013931 139 NDL----GINHSLTILLLDNNDFVG----SLSPE---------IYKLQVLSESQVDEGQLS 182 (433)
Q Consensus 139 ~~~----~~l~~L~~L~l~~N~l~~----~~p~~---------l~~l~~L~~L~l~~n~l~ 182 (433)
+.+ ..-+.|.+|.|++|.+.- .+-.. ..+-+.|+.+....|++.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 654 455678999999887751 12211 223467888888888775
No 373
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.66 E-value=0.018 Score=58.80 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=40.6
Q ss_pred hhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc-cC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI-SK 431 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~-H~ 431 (433)
++|. .+||+|.||+|+.+++. +++..|||.|+...--. ......-..|-.++.-.. |.
T Consensus 368 ~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~--~d~Ve~~~~EkrI~~la~~HP 429 (694)
T KOG0694|consen 368 DDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQ--RDEVESLMCEKRIFELANRHP 429 (694)
T ss_pred cceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceec--cccHHHHHHHHHHHHHhccCC
Confidence 4565 89999999999999995 57889999997543211 112455667777665544 54
No 374
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=95.64 E-value=0.021 Score=51.89 Aligned_cols=67 Identities=7% Similarity=-0.025 Sum_probs=46.0
Q ss_pred CCHHHHHH--HHhhhh--hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHH------HHHHHHHHhhhcccC
Q 013931 362 LKRSELEA--ACEDFS--NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEV------QFRKKVIYQQLLISK 431 (433)
Q Consensus 362 ~~~~el~~--at~~f~--~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~------~F~~Ev~~L~~l~H~ 431 (433)
..|.++.. ..+.+. +++|.||||.||...- ++..+|||.+.+..... +.... .|++|+..+.+++|.
T Consensus 19 ~~~~~~~~~~l~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~--~~~~~~f~~g~~~e~Ea~~l~rL~~~ 95 (232)
T PRK10359 19 NKYKEIFDDFLSYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRT--ERFLKSFVKGDYYENLIVQTDRVRSE 95 (232)
T ss_pred ccHHHHHHHHhhCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCch--HHHHHhhhhhHHHHHHHHHHHHHHHC
Confidence 34555543 233444 8999999999999766 67789999996544322 11111 278999999999885
No 375
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.59 E-value=0.0025 Score=64.33 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=38.7
Q ss_pred hhhcCCCCcEEEEEEeCCCCE-EEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVE-IAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~-VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
..||.|+||+||||+-.+-.. .|-|.|...+. ....+|+-||++|+.+.|.
T Consensus 38 GELGDGAFGKVyKA~nket~~lAAaKvIetkse-----EELEDylVEIeILa~CdHP 89 (1187)
T KOG0579|consen 38 GELGDGAFGKVYKAVNKETKLLAAAKVIETKSE-----EELEDYLVEIEILAECDHP 89 (1187)
T ss_pred hhhcCccchhhhhhhcccchhhhhhhhhcccch-----hHHhhhhhhhhhhhcCCCh
Confidence 457899999999999764433 46777754333 2357899999999999996
No 376
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.53 E-value=0.027 Score=51.49 Aligned_cols=109 Identities=17% Similarity=0.243 Sum_probs=76.3
Q ss_pred CCEEEEEecCCCCcccCccc----ccCCCCCcEEEeeCCcccccCccc-------------cCCCCcCceeecccccCCC
Q 013931 73 GKVVNLNLKDLCLEGTLAPE----IQSLTHIKSIILRNNSFSGIIPEG-------------FGELEELEVLDFGHNNFSG 135 (433)
Q Consensus 73 ~~l~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L~~N~l~~~~p~~-------------~~~l~~L~~L~ls~N~l~~ 135 (433)
++++..+||.|-+....|+. +++-+.|..|.|++|.+...--.. ..+-+.|++.+...|++.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle- 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE- 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence 58899999999888766654 566788999999999875221111 233567889999999886
Q ss_pred CCchh-----ccCCCCCcEEEccCCCCccc-----CchhhhCCCCCCEEEccCCCCC
Q 013931 136 PLPND-----LGINHSLTILLLDNNDFVGS-----LSPEIYKLQVLSESQVDEGQLS 182 (433)
Q Consensus 136 ~~p~~-----~~~l~~L~~L~l~~N~l~~~-----~p~~l~~l~~L~~L~l~~n~l~ 182 (433)
..|.. +..-..|+.+.+..|.|.-. +-..+..+.+|+.||+.+|-|+
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 33322 22224788899999877621 1123567789999999999887
No 377
>PHA02882 putative serine/threonine kinase; Provisional
Probab=95.34 E-value=0.027 Score=53.29 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=20.3
Q ss_pred hhhcCCCCcEEEEEEeCCC----CEEEEEE
Q 013931 376 NVIGSSPIGTVYKGTLSNG----VEIAVAS 401 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g----~~VAVK~ 401 (433)
++||+|+||+||+|...++ ..+|+|.
T Consensus 18 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~ 47 (294)
T PHA02882 18 KLIGCGGFGCVYETQCASDHCINNQAVAKI 47 (294)
T ss_pred eEEecCCCceEEEEEEcCCcccccceEEEe
Confidence 7899999999999998554 3455554
No 378
>PHA03210 serine/threonine kinase US3; Provisional
Probab=95.33 E-value=0.0049 Score=63.24 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=37.1
Q ss_pred hhhh--hhhcCCCCcEEEEEEeCC--CCEEEEEEeeecCC------------CCCchhHHHHHHHHHHHhhhcccCC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTLSN--GVEIAVASVSVASA------------KDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l~~--g~~VAVK~l~~~~~------------~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
.+|. +.||+|+||+||++.+.. +..+++|.+..... .........+|.+|+++|.+++|..
T Consensus 148 ~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~Hpn 224 (501)
T PHA03210 148 AHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHEN 224 (501)
T ss_pred hccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCC
Confidence 4555 789999999999987642 22223321110000 0011223567999999999999973
No 379
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=95.29 E-value=0.025 Score=58.61 Aligned_cols=55 Identities=9% Similarity=0.072 Sum_probs=36.3
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEe-eecCCC-CC-chhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASV-SVASAK-DW-PKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l-~~~~~~-~~-~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.||+|.+.+. .+++|+. ...... .. .......|.+|+++|.+++|.
T Consensus 339 ~~iG~G~~g~Vy~~~~~~~-~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~ 396 (535)
T PRK09605 339 HLIGKGAEADIKKGEYLGR-DAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRA 396 (535)
T ss_pred ceeccCCcEEEEEEeecCc-cceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhccc
Confidence 7899999999999998544 4444443 211111 10 112235699999999999875
No 380
>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]
Probab=95.23 E-value=0.019 Score=60.24 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=40.7
Q ss_pred hhhhcCCCCcEEEEEEeC----C----CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc
Q 013931 375 SNVIGSSPIGTVYKGTLS----N----GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI 429 (433)
Q Consensus 375 ~~~iG~G~fG~VYkg~l~----~----g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~ 429 (433)
.+.||+|.||.|++|.+. . ...||||+++....+ ...++|..|+++|..+.
T Consensus 301 ~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~----~~~~~~~~El~~m~~~g 359 (609)
T KOG0200|consen 301 GKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASS----SEKKDLMSELNVLKELG 359 (609)
T ss_pred cceeecccccceEeEEEeecccccccceEEEEEEecccccCc----HHHHHHHHHHHHHHHhc
Confidence 368999999999999973 1 457999999754443 33688999999999876
No 381
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=95.21 E-value=0.032 Score=54.73 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=41.1
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCC---C-ch-----hHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKD---W-PK-----NLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~---~-~~-----~~~~~F~~Ev~~L~~l~H~ 431 (433)
..||+|.||.|-+|.- .+|+.||||.|....... . .+ .......+||.+|.+++|.
T Consensus 103 ~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~ 168 (576)
T KOG0585|consen 103 KEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHP 168 (576)
T ss_pred hhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCc
Confidence 6799999999998875 379999999985322110 0 00 1124789999999999996
No 382
>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein. Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc
Probab=95.21 E-value=0.042 Score=52.35 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=40.3
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.+|.|+++.||++.. +|+.||||++.... .+....+.|.+|+++|..++|+.
T Consensus 8 ~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~---~~~~~~~~~~~Ei~~l~~l~h~~ 60 (314)
T cd08216 8 KCFEDLMIVHLAKHKP-TNTLVAVKKINLDS---CSKEDLKLLQQEIITSRQLQHPN 60 (314)
T ss_pred HhhcCCceEEEEEecC-CCCEEEEEEEeccc---cchhHHHHHHHHHHHHHhcCCcc
Confidence 4456777888888876 89999999996431 12334678999999999999973
No 383
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.0042 Score=57.30 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=20.3
Q ss_pred CCCCCcEEEccCCC-CcccCchhhhCCCCCCEEEccCCC
Q 013931 143 INHSLTILLLDNND-FVGSLSPEIYKLQVLSESQVDEGQ 180 (433)
Q Consensus 143 ~l~~L~~L~l~~N~-l~~~~p~~l~~l~~L~~L~l~~n~ 180 (433)
++++|..|||++|. ++...-..|.+++.|++|.++.|.
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 45566666666553 332223345566666666665554
No 384
>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=95.02 E-value=0.016 Score=57.76 Aligned_cols=52 Identities=21% Similarity=0.180 Sum_probs=43.4
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhccc
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLIS 430 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H 430 (433)
+.||+||...|||..-.|.+.+|.||+..... +.+....|.+||++|.+++.
T Consensus 367 k~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~---D~qtl~gy~nEI~lL~KLkg 418 (677)
T KOG0596|consen 367 KQIGSGGSSKVFKVLNSDKQIYALKKVVLLEA---DNQTLDGYRNEIALLNKLKG 418 (677)
T ss_pred HhhcCCCcceeeeeecCCCcchhhhHHHHhhc---CHHHHHHHHHHHHHHHHhcC
Confidence 67999999999999988889999999864332 34556789999999999864
No 385
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=94.94 E-value=0.045 Score=54.75 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=41.3
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
.+||+|+.|.||-+.= .+++.||||++....... .+-..+|+.+|...+|+
T Consensus 279 ~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~-----keLilnEi~Vm~~~~H~ 330 (550)
T KOG0578|consen 279 KKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPK-----KELLLNEILVMRDLHHP 330 (550)
T ss_pred hhhccccccceeeeeeccCCceEEEEEEEeccCCc-----hhhhHHHHHHHHhccch
Confidence 6799999999998764 578999999996543222 34589999999999997
No 386
>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]
Probab=94.79 E-value=0.018 Score=53.47 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=39.7
Q ss_pred hhhcCCCCcEEEEEEeCCC-----CEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSNG-----VEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g-----~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
..||+|-||.||||+-.++ ...|+|+++.....+. -...-.+||.++.+++|+.
T Consensus 30 g~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tG---iS~SAcREiaL~REl~h~n 88 (438)
T KOG0666|consen 30 GKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTG---ISMSACREIALLRELKHPN 88 (438)
T ss_pred ceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCC---cCHHHHHHHHHHHHhcCCc
Confidence 5689999999999976432 2589999975433221 1355789999999999973
No 387
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.77 E-value=0.086 Score=42.87 Aligned_cols=99 Identities=17% Similarity=0.244 Sum_probs=53.4
Q ss_pred CEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEcc
Q 013931 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (433)
Q Consensus 74 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~ 153 (433)
+|+.+.+.. .+...-...|..+++|+.+.+.++ +...-...|.++.+|+.+.+.+ .+...-...|..+.+|+.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 677888874 455444445888888888888775 5534445677777888888865 3331223456678888888887
Q ss_pred CCCCcccCch-hhhCCCCCCEEEccC
Q 013931 154 NNDFVGSLSP-EIYKLQVLSESQVDE 178 (433)
Q Consensus 154 ~N~l~~~~p~-~l~~l~~L~~L~l~~ 178 (433)
.| +. .++. .|.+. +|+.+.+..
T Consensus 90 ~~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 90 SN-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TT--B-EEHTTTTTT--T--EEE-TT
T ss_pred cc-cc-EEchhhhcCC-CceEEEECC
Confidence 65 44 3333 45555 788777664
No 388
>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=94.72 E-value=0.056 Score=50.56 Aligned_cols=59 Identities=14% Similarity=0.132 Sum_probs=45.4
Q ss_pred CHHHHHHHHhhhhhhhcCCCCcEEEEEE-eCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc
Q 013931 363 KRSELEAACEDFSNVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI 429 (433)
Q Consensus 363 ~~~el~~at~~f~~~iG~G~fG~VYkg~-l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~ 429 (433)
+++|+-+.|. ++||+|+|+.|--.+ +..|.+.|||.+....+ .......+||+++-..+
T Consensus 74 ~F~d~YkLt~---e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~g-----HsR~RvfREVe~f~~Cq 133 (463)
T KOG0607|consen 74 KFEDMYKLTS---ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPG-----HSRSRVFREVETFYQCQ 133 (463)
T ss_pred hHHHHHHhHH---HHhcCccceeeeeeeeeccchhhhhhhhhcCCc-----hHHHHHHHHHHHHHHhc
Confidence 5677777776 679999999997644 56899999999975433 23577889999986643
No 389
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=94.57 E-value=0.023 Score=54.70 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=39.8
Q ss_pred hhhcCCCCcEEEEEEeC----CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS----NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~----~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++||+|.|++||++.+. ....||+|.+...+. .....+|+++|..+...
T Consensus 42 ~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~-------p~ri~~El~~L~~~gG~ 94 (418)
T KOG1167|consen 42 NKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSS-------PSRILNELEMLYRLGGS 94 (418)
T ss_pred ccccccchhhhhhhhHhhhccccceEeeeecccccC-------chHHHHHHHHHHHhccc
Confidence 89999999999999984 356799999976554 35689999999886543
No 390
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=94.51 E-value=0.056 Score=44.75 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=38.2
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+++.||++... +..++||....... ..+|..|+..+..++|.
T Consensus 4 ~~i~~g~~~~v~~~~~~-~~~~~iK~~~~~~~-------~~~~~~e~~~~~~l~~~ 51 (155)
T cd05120 4 KLLKGGLTNRVYLLGTK-DEDYVLKINPSREK-------GADREREVAILQLLARK 51 (155)
T ss_pred eecccccccceEEEEec-CCeEEEEecCCCCc-------hhHHHHHHHHHHHHHHc
Confidence 46899999999999984 47899998853221 36799999999998773
No 391
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=94.38 E-value=0.084 Score=51.02 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=41.5
Q ss_pred hhhcCCCCcEEEEEEeCC-CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~-g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|.-|+||.+++.+ +...|+|.+...+-.. .......+.|-++|+.+.|.
T Consensus 83 k~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~--rkKl~Ra~tE~eIL~~lDHP 137 (459)
T KOG0610|consen 83 KRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLAS--RKKLKRAQTEREILSLLDHP 137 (459)
T ss_pred HHcCCCCceeEEEEEecCCCceEEEEEecHHHHhh--hhHHHHHHHHHHHHHhcCCC
Confidence 789999999999999965 3789999996543322 22345677888899999986
No 392
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.0029 Score=58.33 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=52.3
Q ss_pred CEEEEEecCCCCcc-cCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeeccccc-CCC-CCchhccCCCCCcEE
Q 013931 74 KVVNLNLKDLCLEG-TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN-FSG-PLPNDLGINHSLTIL 150 (433)
Q Consensus 74 ~l~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~-l~~-~~p~~~~~l~~L~~L 150 (433)
+|++|||++..|+. .+-.-+..+.+|+.|.|.++.+...+-..+.+-.+|+.|+|+.+. |+. .+---+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 57888888877762 233346667788888888888877776777777777777776643 221 011124455566666
Q ss_pred EccCCCC
Q 013931 151 LLDNNDF 157 (433)
Q Consensus 151 ~l~~N~l 157 (433)
+|+-+.+
T Consensus 266 NlsWc~l 272 (419)
T KOG2120|consen 266 NLSWCFL 272 (419)
T ss_pred CchHhhc
Confidence 6655443
No 393
>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]
Probab=94.25 E-value=0.054 Score=53.33 Aligned_cols=52 Identities=6% Similarity=0.110 Sum_probs=40.2
Q ss_pred hhhcCCCCcEEE--EEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVY--KGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VY--kg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.||+|+||.+| +++. ++..+++|++......+ ...+.-.+|+.++++++|.
T Consensus 10 ~~iG~GafG~a~lvrhk~-~~~~~vlK~I~l~~~t~---~~r~~A~~E~~lis~~~hP 63 (426)
T KOG0589|consen 10 RQVGRGAFGSALLVRHKS-DDKLYVLKKINLEKLTE---PERRSAIQEMDLLSKLLHP 63 (426)
T ss_pred hhcCccccchhhhhhhcc-CCceEEEEEEeccccCc---hhhHHHHHHHHHHHhccCC
Confidence 679999999886 4554 77799999997544322 2245789999999999996
No 394
>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=93.85 E-value=0.05 Score=49.10 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=42.0
Q ss_pred hhhcCCCCcEEEEEE-eCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~-l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+.+|+|||..||.++ +.++...|+||+...+.++ ...-++|++.=.++.|.
T Consensus 27 ~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~-----~e~~~rEid~~rkf~s~ 78 (302)
T KOG2345|consen 27 RLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQED-----IEEALREIDNHRKFNSP 78 (302)
T ss_pred eeecCCCceeeeeecccCcccchhhheeeccchHH-----HHHHHHHHHHHHhhCCc
Confidence 679999999999877 6788999999997554333 67789999998888875
No 395
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=93.83 E-value=0.032 Score=58.33 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=33.4
Q ss_pred hhhcCCCCc-EEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhh
Q 013931 376 NVIGSSPIG-TVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQL 427 (433)
Q Consensus 376 ~~iG~G~fG-~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~ 427 (433)
+++|.|.-| .||+|++ +|+.|||||+-... ..--.+||..|..
T Consensus 515 eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e~--------~~~A~rEi~lL~e 558 (903)
T KOG1027|consen 515 EILGYGSNGTVVFRGVY-EGREVAVKRLLEEF--------FDFAQREIQLLQE 558 (903)
T ss_pred HHcccCCCCcEEEEEee-CCceehHHHHhhHh--------HHHHHHHHHHHHh
Confidence 788999987 5799999 99999999994211 2334789988875
No 396
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=93.82 E-value=0.062 Score=33.69 Aligned_cols=12 Identities=8% Similarity=0.030 Sum_probs=5.1
Q ss_pred HHHHHHhhhhcc
Q 013931 325 ATVGIYLCRCNK 336 (433)
Q Consensus 325 ~~~~~~~~~~r~ 336 (433)
+++++++++||+
T Consensus 28 l~~~l~~~~rR~ 39 (40)
T PF08693_consen 28 LGAFLFFWYRRK 39 (40)
T ss_pred HHHHhheEEecc
Confidence 333444444443
No 397
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=93.78 E-value=0.023 Score=41.69 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=15.1
Q ss_pred cCCCCCCHHHHHHHHhhhhhhh
Q 013931 357 TGVPKLKRSELEAACEDFSNVI 378 (433)
Q Consensus 357 ~~~~~~~~~el~~at~~f~~~i 378 (433)
.....++|+|-..|...|.++|
T Consensus 52 tYIDP~TYEDP~qAV~eFAkEI 73 (75)
T PF14575_consen 52 TYIDPHTYEDPNQAVREFAKEI 73 (75)
T ss_dssp ----GGGSSSHHHHHHHCSSB-
T ss_pred eecCcccccCHHHHHHHHHhhc
Confidence 3445689999999999998655
No 398
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.77 E-value=0.037 Score=50.51 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=41.1
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+-||.|+||.||-..- +||+.||.||+-.... .-...+.|.+|+++|..++|.
T Consensus 59 RPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq---~L~s~krvFre~kmLcfFkHd 112 (449)
T KOG0664|consen 59 RPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQ---NLASCKRVFREIKMLSSFRHD 112 (449)
T ss_pred CcccccceeEEEeccCCCCccchhHhhcchHHH---HHHHHHHHHHHHHHHHhhccc
Confidence 6799999999998665 4899999999843221 012246799999999999996
No 399
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.69 E-value=0.057 Score=55.57 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=40.5
Q ss_pred hhhcCCCCcEEEEEEeCCCC-EEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLSNGV-EIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~-~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
-+||+|-||+||-|.-.+.+ .||||-+.+..++. .+-...||.+=+.++|+.
T Consensus 581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~-----~QPLhEEIaLH~~LrHkN 633 (1226)
T KOG4279|consen 581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSRE-----VQPLHEEIALHSTLRHKN 633 (1226)
T ss_pred EEeecCceeEEEeeccccceeEEEeeecccccchh-----hccHHHHHHHHHHHhhHh
Confidence 57999999999999865544 58999996433332 456889999999999973
No 400
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.62 E-value=0.036 Score=28.00 Aligned_cols=7 Identities=43% Similarity=0.567 Sum_probs=2.5
Q ss_pred EEEeeCC
Q 013931 101 SIILRNN 107 (433)
Q Consensus 101 ~L~L~~N 107 (433)
.|+|++|
T Consensus 5 ~L~l~~n 11 (17)
T PF13504_consen 5 TLDLSNN 11 (17)
T ss_dssp EEEETSS
T ss_pred EEECCCC
Confidence 3333333
No 401
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=93.53 E-value=0.091 Score=43.53 Aligned_cols=10 Identities=20% Similarity=0.258 Sum_probs=4.1
Q ss_pred HHHhhhhccc
Q 013931 328 GIYLCRCNKV 337 (433)
Q Consensus 328 ~~~~~~~r~~ 337 (433)
+|++|+|+|+
T Consensus 70 vf~~c~r~kk 79 (154)
T PF04478_consen 70 VFIFCIRRKK 79 (154)
T ss_pred heeEEEeccc
Confidence 3444444443
No 402
>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]
Probab=93.50 E-value=0.13 Score=52.05 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=43.7
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
..||+|.|++|..|.-. .|+.||||.+...... ....+.+.+||++|-.+.|.|
T Consensus 62 ~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln---~~~~~k~~rev~imk~l~HPn 116 (596)
T KOG0586|consen 62 KTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLN---PSKRQKLGREVDIMKSLNHPN 116 (596)
T ss_pred eeeccceeEEEEeeEecCCCceEEEEEehhcccC---hHHHHHHHHHHHHHHhcCCcc
Confidence 67999999999998864 6999999998654432 233455999999999999987
No 403
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=93.19 E-value=0.11 Score=53.07 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=44.3
Q ss_pred ccCCCCCCHHHHHHHH------------hhhh-hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHH
Q 013931 356 VTGVPKLKRSELEAAC------------EDFS-NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKV 422 (433)
Q Consensus 356 ~~~~~~~~~~el~~at------------~~f~-~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev 422 (433)
+...+.+++++.++.- ..|+ +-|+.++-|.||+|+|.+|+.||||...+.- +..+...+
T Consensus 98 QD~vpp~~~~~~~~iie~eLG~~iee~F~eF~~~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi--------~~~i~~DL 169 (517)
T COG0661 98 QDRVPPFPFEEAERIIEEELGRPIEELFSEFEPEPIASASIAQVHRAVLKSGEEVAVKVQRPGI--------RERIEADL 169 (517)
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCHHHHHHHcCCCchhhhhHhhheeEEecCCCEEEEEecCCCh--------HHHHHHHH
Confidence 3456667776654322 2244 7889999999999999999999999987432 34455555
Q ss_pred HHhh
Q 013931 423 IYQQ 426 (433)
Q Consensus 423 ~~L~ 426 (433)
.+|.
T Consensus 170 ~il~ 173 (517)
T COG0661 170 KLLR 173 (517)
T ss_pred HHHH
Confidence 5554
No 404
>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase. Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.
Probab=93.00 E-value=0.19 Score=46.79 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=25.4
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeee
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSV 404 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~ 404 (433)
+.||+|+||.||+|+.. +++.||||+++.
T Consensus 5 ~~lg~g~~~~v~~~~~~~~~~~~aik~~~~ 34 (282)
T cd07831 5 GKIGEGTFSEVLKAQSRKTGKYYAIKCMKK 34 (282)
T ss_pred eeccccccceEEEEEEcCCCcEEEEEEehh
Confidence 57999999999999864 689999999864
No 405
>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili
Probab=92.81 E-value=0.16 Score=47.36 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=25.5
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeee
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSV 404 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~ 404 (433)
+.||+|+||.||+|... +++.||||++..
T Consensus 5 ~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~ 34 (283)
T cd07830 5 KQLGDGTFGSVYLARNKETGELVAIKKMKK 34 (283)
T ss_pred eeeccCCceEEEEEEECCCCcEEEEEEehh
Confidence 67999999999999986 478899999864
No 406
>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]
Probab=92.66 E-value=0.26 Score=42.57 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=35.1
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL 428 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l 428 (433)
..||+|.+|.||.|.+ .|..||+|.-...+. ...++.|+++|..+
T Consensus 28 ~~L~KG~~s~Vyl~~~-~~~~~a~Kvrr~ds~-------r~~l~kEakiLeil 72 (201)
T COG2112 28 KELAKGTTSVVYLGEW-RGGEVALKVRRRDSP-------RRNLEKEAKILEIL 72 (201)
T ss_pred hhhhcccccEEEEeec-cCceEEEEEecCCcc-------hhhHHHHHHHHHHh
Confidence 6799999999999999 555899988754332 56788888887654
No 407
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=92.60 E-value=0.12 Score=31.83 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=13.8
Q ss_pred EEEEhhHHHHHHHHHHHHHHHhhhhccc
Q 013931 310 IAILGGVIGGAILLVATVGIYLCRCNKV 337 (433)
Q Consensus 310 ~~ii~~v~~~~~~l~~~~~~~~~~~r~~ 337 (433)
+.++++|+.+++++++.++.+.|++||.
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcykk~ 33 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCYKKH 33 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3455555555555555444444444443
No 408
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.34 E-value=0.26 Score=39.95 Aligned_cols=95 Identities=13% Similarity=0.149 Sum_probs=50.5
Q ss_pred CCEEEEEecCCCCcccCcccccCCCCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCCCchhccCCCCCcEEEc
Q 013931 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (433)
Q Consensus 73 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l 152 (433)
.+++.+.+.++ +...-...|.++++|+.+.+.+ .+...-...|..+++|+.+++..+ +...-...|.++ +|+.+.+
T Consensus 35 ~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 35 TSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-
T ss_pred ccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEE
Confidence 36889999885 6644445688888999999976 444234456778999999999776 542223457776 8999998
Q ss_pred cCCCCcccCchhhhCCCCCC
Q 013931 153 DNNDFVGSLSPEIYKLQVLS 172 (433)
Q Consensus 153 ~~N~l~~~~p~~l~~l~~L~ 172 (433)
.. .+...-...|.+.++|+
T Consensus 111 ~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 111 PS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TT-B-SS----GGG------
T ss_pred CC-CccEECCccccccccCC
Confidence 76 34423334566665553
No 409
>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=92.22 E-value=0.2 Score=45.24 Aligned_cols=28 Identities=36% Similarity=0.591 Sum_probs=25.0
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEee
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVS 403 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~ 403 (433)
+.||.|+||.+|.|.- .+|..||||.=+
T Consensus 21 rkiGsGSFGdIy~~~~i~~ge~VAiK~Es 49 (341)
T KOG1163|consen 21 RKIGSGSFGDIYLGISITSGEEVAIKLES 49 (341)
T ss_pred EeecCCchhheeeeeeccCCceEEEEeec
Confidence 7899999999999875 789999999754
No 410
>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=92.00 E-value=0.22 Score=47.93 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=34.1
Q ss_pred hhhcCCCCcEEEEEEeCCC--CEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc
Q 013931 376 NVIGSSPIGTVYKGTLSNG--VEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI 429 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g--~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~ 429 (433)
..||+|+||.||++.-.+. ..+|+|.-....... ...+.-|+.+|..+.
T Consensus 24 ~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~-----~~~l~~E~~vl~~l~ 74 (322)
T KOG1164|consen 24 KKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSK-----PSVLKIEIQVLKKLE 74 (322)
T ss_pred eeccccCCceEEEEEecCCCCeeEEEEEEEecccCC-----CccchhHHHHHHHHh
Confidence 7899999999999986443 367777765433222 125777777777765
No 411
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=91.44 E-value=0.24 Score=43.65 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=34.2
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhh
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQ 426 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~ 426 (433)
..||+|++|.|-|-.+ .+|+.+|||++...-. .+.++....|+.+.-
T Consensus 52 ~elGrGayG~vekmrh~~sg~imAvKri~~tvn----~q~q~r~L~dldi~~ 99 (282)
T KOG0984|consen 52 EELGRGAYGVVEKMRHIQSGTIMAVKRIRATVN----SQEQKRLLMDLDIIM 99 (282)
T ss_pred hhhcCCccchhhheeeccCCeEEEEeeehhhcC----hHHHHHHHHhhhhhc
Confidence 6799999998866444 5899999999974333 333566777777653
No 412
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=91.39 E-value=0.032 Score=54.44 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=40.3
Q ss_pred hhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhccc
Q 013931 373 DFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLIS 430 (433)
Q Consensus 373 ~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H 430 (433)
.|. ++||+||||.||-.+.. .|...|.|+|....-+. ...+.--++|-.+|.++.-
T Consensus 186 ~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKk--r~ge~maLnEk~iL~kV~s 244 (591)
T KOG0986|consen 186 TFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKK--RKGETMALNEKQILEKVSS 244 (591)
T ss_pred ceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHH--hhhhHHhhHHHHHHHHhcc
Confidence 466 89999999999987774 68889999985433221 2335667788888877653
No 413
>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.30 E-value=0.016 Score=52.27 Aligned_cols=52 Identities=21% Similarity=0.373 Sum_probs=38.9
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeee-cCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSV-ASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~-~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
.+||+|.||.||||.-. .|+.||+|++-- ....+. -..-.+||++|..+.|.
T Consensus 23 ~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGf----pitalreikiL~~lkHe 76 (376)
T KOG0669|consen 23 AKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGF----PITALREIKILQLLKHE 76 (376)
T ss_pred HhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCC----cHHHHHHHHHHHHhcch
Confidence 67999999999999875 467789988632 222221 24568999999999996
No 414
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.01 E-value=0.18 Score=28.41 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=5.7
Q ss_pred cCceeecccccCC
Q 013931 122 ELEVLDFGHNNFS 134 (433)
Q Consensus 122 ~L~~L~ls~N~l~ 134 (433)
+|++|+|++|+|.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 415
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.01 E-value=0.18 Score=28.41 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=5.7
Q ss_pred cCceeecccccCC
Q 013931 122 ELEVLDFGHNNFS 134 (433)
Q Consensus 122 ~L~~L~ls~N~l~ 134 (433)
+|++|+|++|+|.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 416
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.70 E-value=0.2 Score=44.87 Aligned_cols=46 Identities=13% Similarity=0.290 Sum_probs=39.4
Q ss_pred hhhcCCCCcEEEEEE-eCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc
Q 013931 376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI 429 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~-l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~ 429 (433)
+.+|+|.+..|+.|. +.+.+.+.||.|++.. .+...+||++|..++
T Consensus 44 rk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk--------kkKIkREikIL~nL~ 90 (338)
T KOG0668|consen 44 RKVGRGKYSEVFEGINITNNEKCVIKILKPVK--------KKKIKREIKILQNLR 90 (338)
T ss_pred HHHcCccHhhHhcccccCCCceEEEeeechHH--------HHHHHHHHHHHHhcc
Confidence 779999999999997 4578889999997533 477999999999887
No 417
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=90.47 E-value=0.2 Score=54.40 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=27.3
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecC
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVAS 406 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~ 406 (433)
..||+|+||+||+|.=.+|+.||+|.=++..
T Consensus 704 ~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~ 734 (974)
T KOG1166|consen 704 KEIGEGSYGSVYVATHSNGKLVALKVEKPPN 734 (974)
T ss_pred eeeccccceEEEEeecCCCcEEEEEeecCCC
Confidence 7899999999999999999999999865433
No 418
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=90.44 E-value=0.26 Score=45.80 Aligned_cols=54 Identities=9% Similarity=0.022 Sum_probs=41.3
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
..||.|+||.|...... .|...|.|+|+...-- ...+...-.+|-.+|..+.|.
T Consensus 50 ~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vV--klKQveH~~nEk~vL~~v~~P 104 (355)
T KOG0616|consen 50 KTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVV--KLKQVEHTHNEKRVLKAVSHP 104 (355)
T ss_pred eeeccCccceEEEEEEccCCceeehhhcCHHHHH--HHHHHHHHhhHHHHHhhccCc
Confidence 77999999999988774 6788999999642221 133455688999999998885
No 419
>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]
Probab=90.43 E-value=0.081 Score=53.69 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=38.2
Q ss_pred hhhhhcCCCCcEEEEEEeC-CCCEEEE--EEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 374 FSNVIGSSPIGTVYKGTLS-NGVEIAV--ASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 374 f~~~iG~G~fG~VYkg~l~-~g~~VAV--K~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
|+.+||+|+|-+||||.=. .|..||= +++.... .++.....|..||++|..|.|..
T Consensus 44 ~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~---q~~~~leR~~~Ev~lLKsL~H~N 102 (632)
T KOG0584|consen 44 FDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVT---QSPEELERLYSEVHLLKSLKHPN 102 (632)
T ss_pred hhhhcccccceeeeeccccccchhhHHHHHhHHHhh---cChHHHHHHHHHHHHHccCCCCc
Confidence 4478999999999999752 3555652 2222111 11333477999999999999973
No 420
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=90.36 E-value=0.48 Score=43.46 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=39.5
Q ss_pred hhhc-CCCCcEEEEEEeCCCCEEEEEEeeecC------CCC--CchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIG-SSPIGTVYKGTLSNGVEIAVASVSVAS------AKD--WPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG-~G~fG~VYkg~l~~g~~VAVK~l~~~~------~~~--~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
.+|| .||.|+||+... +|..++||+..... ..+ .+......+.+|++++.+++|.
T Consensus 37 ~~lg~~~g~gtv~~v~~-~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~ 100 (239)
T PRK01723 37 RVVGSAKGRGTTWFVQT-PGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEA 100 (239)
T ss_pred ceeecCCCCccEEEEEe-CCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhC
Confidence 6798 999999999998 57789999885311 001 1112345689999999998874
No 421
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=90.28 E-value=0.15 Score=41.03 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=10.3
Q ss_pred EEhhHHHHHHHHHHHHHHHhhhhccc
Q 013931 312 ILGGVIGGAILLVATVGIYLCRCNKV 337 (433)
Q Consensus 312 ii~~v~~~~~~l~~~~~~~~~~~r~~ 337 (433)
|+.+|+++++++++++.|+++|+||+
T Consensus 69 Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33334344444444444444444444
No 422
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.14 E-value=0.3 Score=27.46 Aligned_cols=20 Identities=40% Similarity=0.423 Sum_probs=12.7
Q ss_pred CCCCcEEEccCCCCcccCchh
Q 013931 144 NHSLTILLLDNNDFVGSLSPE 164 (433)
Q Consensus 144 l~~L~~L~l~~N~l~~~~p~~ 164 (433)
+++|++|+|++|.+. .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 356677777777776 55543
No 423
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.14 E-value=0.3 Score=27.46 Aligned_cols=20 Identities=40% Similarity=0.423 Sum_probs=12.7
Q ss_pred CCCCcEEEccCCCCcccCchh
Q 013931 144 NHSLTILLLDNNDFVGSLSPE 164 (433)
Q Consensus 144 l~~L~~L~l~~N~l~~~~p~~ 164 (433)
+++|++|+|++|.+. .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 356677777777776 55543
No 424
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=89.68 E-value=0.33 Score=50.99 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=21.6
Q ss_pred CCHHHHHHHHhhhh--hhhcCCCCcEEEEEEe
Q 013931 362 LKRSELEAACEDFS--NVIGSSPIGTVYKGTL 391 (433)
Q Consensus 362 ~~~~el~~at~~f~--~~iG~G~fG~VYkg~l 391 (433)
+.-+|.+.+.+ .. +.||+|+||+||.|.-
T Consensus 985 yv~deWe~~r~-it~~relg~gsfg~Vy~g~~ 1015 (1025)
T KOG4258|consen 985 YVPDEWEVSRE-ITLGRELGQGSFGMVYEGNA 1015 (1025)
T ss_pred CChhHHHHHHH-HhhhhhhccCccceEEEecC
Confidence 45566665544 32 8999999999999975
No 425
>PRK12274 serine/threonine protein kinase; Provisional
Probab=89.57 E-value=0.56 Score=42.00 Aligned_cols=53 Identities=11% Similarity=-0.062 Sum_probs=37.2
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhccc
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLIS 430 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H 430 (433)
..|++|+||+||...= +++.++.+.+.....-- ..-...-|.+|+++|.++.|
T Consensus 8 ~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~-~~~~~~l~~rE~~iL~~L~~ 60 (218)
T PRK12274 8 EPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWL-RGVAWWLARREALALRQLDG 60 (218)
T ss_pred eeecCCCcceEEEeec-CCceeeecccccchhhh-hhHHHHHHHHHHHHHHhcCC
Confidence 5799999999996654 78888888885322200 01112358999999999976
No 426
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=89.52 E-value=0.17 Score=50.71 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=37.3
Q ss_pred hhhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhc-cc
Q 013931 375 SNVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLL-IS 430 (433)
Q Consensus 375 ~~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l-~H 430 (433)
.++||+|+|.+||+|.= ..+.+.|||++...--- .+...+-...|=++|.+| .|
T Consensus 78 g~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Ii--ke~KvkYV~~Ek~~l~~L~~h 133 (604)
T KOG0592|consen 78 GKILGEGSYSTVVLAREKATGKEYAIKVLDKRYII--KEKKVKYVTREKEALTQLSGH 133 (604)
T ss_pred hheeccccceeEEEeeecCCCceeeHhhhhHHHHH--hhcccchhhHHHHHHHHhhCC
Confidence 38999999999999885 46889999998532110 011133466777777777 55
No 427
>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional
Probab=89.30 E-value=1 Score=41.76 Aligned_cols=39 Identities=10% Similarity=-0.001 Sum_probs=28.0
Q ss_pred HHHHHHhhhh--hh--hcCCCCcEEEEEEe-CCCCEEEEEEeee
Q 013931 366 ELEAACEDFS--NV--IGSSPIGTVYKGTL-SNGVEIAVASVSV 404 (433)
Q Consensus 366 el~~at~~f~--~~--iG~G~fG~VYkg~l-~~g~~VAVK~l~~ 404 (433)
++....+++. +. ||+|+||.||++.- .+|..+|+|.+..
T Consensus 8 ~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~ 51 (267)
T PHA03390 8 ELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKA 51 (267)
T ss_pred HHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEeh
Confidence 3333444544 44 49999999999886 4678899998853
No 428
>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]
Probab=88.85 E-value=0.32 Score=51.48 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=43.9
Q ss_pred CHHHHHHHHhhhh--hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc
Q 013931 363 KRSELEAACEDFS--NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI 429 (433)
Q Consensus 363 ~~~el~~at~~f~--~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~ 429 (433)
.++.+...++.|. .+||+|-+|.|||+.= .+|+.+|||.+...... +.|.+.|.++|....
T Consensus 10 ~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~------deEiE~eynil~~~~ 73 (953)
T KOG0587|consen 10 DLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDE------EEEIELEYNMLKKYS 73 (953)
T ss_pred chhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccc------cHHHHHHHHHHHhcc
Confidence 3444444555555 8899999999999874 57999999998654433 467888888876643
No 429
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=88.62 E-value=1.1 Score=45.81 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=38.6
Q ss_pred ccCCCCCCHHHHHHHHhh------------hh-hhhcCCCCcEEEEEEeCCCCEEEEEEeee
Q 013931 356 VTGVPKLKRSELEAACED------------FS-NVIGSSPIGTVYKGTLSNGVEIAVASVSV 404 (433)
Q Consensus 356 ~~~~~~~~~~el~~at~~------------f~-~~iG~G~fG~VYkg~l~~g~~VAVK~l~~ 404 (433)
....+.++++|+.+.-.. |+ .-||.-+.|.||+|+|++|+.||||.-++
T Consensus 134 qD~~Pp~~~ee~~~i~e~ElG~~ie~if~~f~~~piaaASlaQVhrA~L~~G~~VaVKVQ~P 195 (538)
T KOG1235|consen 134 QDQAPPFPWEEAFKIFEEELGAPIEDIFSEFDEEPIAAASLAQVHRARLKNGEDVAVKVQHP 195 (538)
T ss_pred hccCCCCCHHHHHHHHHHHhCCCHHHHHHhcCcchhhhcchhheEEEEecCCCEEEEEecCc
Confidence 356677888877643222 44 78999999999999999999999999764
No 430
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=88.60 E-value=0.16 Score=49.67 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=33.3
Q ss_pred hhhcCCCCcEEEEEE-eCCCCEEEEEEeeecCCCCCchh----HHHHHHHHHHHhhhccc
Q 013931 376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKN----LEVQFRKKVIYQQLLIS 430 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~-l~~g~~VAVK~l~~~~~~~~~~~----~~~~F~~Ev~~L~~l~H 430 (433)
++||+|||..|||+. +...+.||||.-... ++|... -.+--.+|-.+=..+.|
T Consensus 469 hLLGrGGFSEVyKAFDl~EqRYvAvKIHqlN--K~WrdEKKeNYhKHAcREyrIHKeLDH 526 (775)
T KOG1151|consen 469 HLLGRGGFSEVYKAFDLTEQRYVAVKIHQLN--KNWRDEKKENYHKHACREYRIHKELDH 526 (775)
T ss_pred HHhccccHHHHHHhcccchhheeeEeeehhc--cchhhHhhhhHHHHHHHHHhhhhccCc
Confidence 789999999999987 345677999874321 222111 12334556666555655
No 431
>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.85 E-value=0.52 Score=47.12 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=41.0
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+-||+|.|..|-.|.- =.|..||||.+....-. ........+||..|.-++|..
T Consensus 24 kTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD---~~st~hlfqEVRCMKLVQHpN 78 (864)
T KOG4717|consen 24 KTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLD---TLSTGHLFQEVRCMKLVQHPN 78 (864)
T ss_pred hhhcCCceehhhhhhhhcccceeEEEEecccccc---hhhhhHHHHHHHHHHHhcCcC
Confidence 4599999999876542 17999999999654332 233567889999999999963
No 432
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.79 E-value=0.6 Score=43.97 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=40.5
Q ss_pred hhhh--hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++|+ ++||+|-||+|....= ..|...|+|.|+...--. .....-=..|-.+|...+|.
T Consensus 168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviia--kdEVAHTlTE~RVL~~~~HP 228 (516)
T KOG0690|consen 168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIA--KDEVAHTLTENRVLQNCRHP 228 (516)
T ss_pred chhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheee--hHHhhhhhhHHHHHHhccCc
Confidence 4455 8999999999986543 378889999996433211 11234457888888888885
No 433
>smart00221 STYKc Protein kinase; unclassified specificity. Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.
Probab=87.17 E-value=0.6 Score=41.44 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=27.0
Q ss_pred hhhcCCCCcEEEEEEeCC-CCEEEEEEeeecC
Q 013931 376 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVAS 406 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~-g~~VAVK~l~~~~ 406 (433)
+.||+|+||.||++...+ ++.+|||.+....
T Consensus 5 ~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~ 36 (225)
T smart00221 5 KKLGEGAFGKVYLARDKGTGELVAVKVLKKEK 36 (225)
T ss_pred eEeecCCCeEEEEEEEcCCCcEEEEEeecccc
Confidence 678999999999999976 8999999997543
No 434
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=87.12 E-value=1.7 Score=40.10 Aligned_cols=58 Identities=21% Similarity=0.207 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHhhhhhhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhh
Q 013931 361 KLKRSELEAACEDFSNVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQL 427 (433)
Q Consensus 361 ~~~~~el~~at~~f~~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~ 427 (433)
+-+..||+.. ..||.|..|.|+|..+. .|..+|||.+..... .+..+..+..+.++.+
T Consensus 88 ~~dindl~~l-----~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~N----kee~kRILmDldvv~~ 146 (391)
T KOG0983|consen 88 QADINDLENL-----GDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGN----KEENKRILMDLDVVLK 146 (391)
T ss_pred ccChHHhhhH-----HhhcCCCccceEEEEEcccceEEEEEeecccCC----HHHHHHHHHhhhHHhh
Confidence 3455666655 56999999999999985 588999999965443 2335667777777654
No 435
>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=87.05 E-value=0.037 Score=49.83 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=40.3
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++||+|.|..||+..- +.|+..|+|.+.... .+....++..+|+.+-..++|.
T Consensus 17 e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k---~~~~~~e~l~rEarIC~~LqHP 70 (355)
T KOG0033|consen 17 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKK---LSARDFQKLEREARICRKLQHP 70 (355)
T ss_pred HHHccCchHHHHHHHhccchHHHHHHHhhhhh---hccccHHHHHHHHHHHHhcCCC
Confidence 7899999999998543 678888888774321 1122357889999999999996
No 436
>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases. Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core
Probab=86.98 E-value=0.65 Score=41.96 Aligned_cols=31 Identities=32% Similarity=0.565 Sum_probs=27.0
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecC
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVAS 406 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~ 406 (433)
+.||+|+||.||++... +|+.++||++....
T Consensus 6 ~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~ 37 (253)
T cd05122 6 EKIGKGGFGEVYKARHKRTGKEVAIKVIKLES 37 (253)
T ss_pred eeeccCCceEEEEEEECCCCcEEEEEEecccc
Confidence 67999999999999985 68999999996544
No 437
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=86.53 E-value=0.43 Score=45.17 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=23.1
Q ss_pred hhhcCCCCcEEEEEE-eCCCCEEEEEE
Q 013931 376 NVIGSSPIGTVYKGT-LSNGVEIAVAS 401 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~-l~~g~~VAVK~ 401 (433)
++||+|.||..+.|+ |-+++.||||-
T Consensus 34 kKIGeGsFG~lf~G~Nl~nne~VAIKf 60 (449)
T KOG1165|consen 34 KKIGEGSFGVLFLGKNLYNNEPVAIKF 60 (449)
T ss_pred cccccCcceeeecccccccCceEEEEe
Confidence 789999999999987 45899999985
No 438
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=85.05 E-value=1.1 Score=37.29 Aligned_cols=36 Identities=8% Similarity=0.023 Sum_probs=23.2
Q ss_pred cEEEEhhHHHHHHHHHHHHHHHhhhhccccCcCCCC
Q 013931 309 HIAILGGVIGGAILLVATVGIYLCRCNKVSTVKPWA 344 (433)
Q Consensus 309 ~~~ii~~v~~~~~~l~~~~~~~~~~~r~~~~~~~~~ 344 (433)
+-+|||+++|..+.++++++.++++...+++++...
T Consensus 48 knIVIGvVVGVGg~ill~il~lvf~~c~r~kktdfi 83 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPILLGILALVFIFCIRRKKTDFI 83 (154)
T ss_pred ccEEEEEEecccHHHHHHHHHhheeEEEecccCccc
Confidence 335566655544444566778888888888776543
No 439
>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]
Probab=84.22 E-value=0.65 Score=47.09 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=37.4
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCC--C-chhHHHHHHHHHHHhhhcc
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKD--W-PKNLEVQFRKKVIYQQLLI 429 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~--~-~~~~~~~F~~Ev~~L~~l~ 429 (433)
..+|+|+||.|..+... +...|.||++...+--. | ........-.||.+|+.+.
T Consensus 567 q~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~ 624 (772)
T KOG1152|consen 567 QPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLN 624 (772)
T ss_pred eeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhh
Confidence 78999999999999985 45678999986433111 1 0000123678999999988
No 440
>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=83.62 E-value=0.97 Score=46.63 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=42.4
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+-||+|+-|.|-.|+- ..|+.+|||.+...... +.......++||-+|.-|.|.
T Consensus 18 kTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~--s~s~~~~IerEIviMkLi~Hp 72 (786)
T KOG0588|consen 18 KTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSEL--SSSQPAGIEREIVIMKLIEHP 72 (786)
T ss_pred ccccCCCCceehhhhcccccceeEEEeecccccc--ccccccchhhhhHHHHHhcCC
Confidence 5699999999998875 57999999999644321 223356799999999999996
No 441
>PF15102 TMEM154: TMEM154 protein family
Probab=82.53 E-value=1.6 Score=36.02 Aligned_cols=6 Identities=33% Similarity=0.556 Sum_probs=2.3
Q ss_pred CHHHHH
Q 013931 363 KRSELE 368 (433)
Q Consensus 363 ~~~el~ 368 (433)
..+||.
T Consensus 126 Emeeld 131 (146)
T PF15102_consen 126 EMEELD 131 (146)
T ss_pred hHHHHH
Confidence 334433
No 442
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=81.73 E-value=0.46 Score=33.10 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=0.5
Q ss_pred HHHHHHHHHhhhhccc
Q 013931 322 LLVATVGIYLCRCNKV 337 (433)
Q Consensus 322 ~l~~~~~~~~~~~r~~ 337 (433)
+++++++|+++|.|++
T Consensus 24 ~ailLIlf~iyR~rkk 39 (64)
T PF01034_consen 24 FAILLILFLIYRMRKK 39 (64)
T ss_dssp -------------S--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3334444555554443
No 443
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=81.69 E-value=0.96 Score=49.50 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=40.9
Q ss_pred HHHHHHhhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhh
Q 013931 366 ELEAACEDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQL 427 (433)
Q Consensus 366 el~~at~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~ 427 (433)
++.--.++|. ++||+|+||.|...... .+++.|.|+|+...- .......-|..|=.+|..
T Consensus 69 ~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eM--lKr~~tA~F~EERDimv~ 131 (1317)
T KOG0612|consen 69 ELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEM--LKRAETACFREERDIMVF 131 (1317)
T ss_pred HHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHH--hhchhHHHHHHHhHHHHc
Confidence 3443446676 89999999999998875 467789999964110 001124568888888864
No 444
>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=81.65 E-value=0.74 Score=51.04 Aligned_cols=54 Identities=20% Similarity=0.290 Sum_probs=42.5
Q ss_pred hhhcCCCCcEEEEEE-eCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 376 NVIGSSPIGTVYKGT-LSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~-l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
+.||.|-||.||-|+ ++.|...|||-++-.... ........+|+.+|..+.|+.
T Consensus 1241 ~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~---~k~~~~i~eEm~vlE~lnHpN 1295 (1509)
T KOG4645|consen 1241 NFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSD---HKTFKLIAEEMKVLEGLNHPN 1295 (1509)
T ss_pred cccCCcceeeeEEeecCCccchhhhhhhhcCccc---cccCcchHHHHHHHHhccCcc
Confidence 789999999999876 467889999988643322 223567899999999999974
No 445
>PF15345 TMEM51: Transmembrane protein 51
Probab=81.35 E-value=7 Score=34.97 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=13.0
Q ss_pred EEhhHHHHHHHHHHHHHHHhhhhcccc
Q 013931 312 ILGGVIGGAILLVATVGIYLCRCNKVS 338 (433)
Q Consensus 312 ii~~v~~~~~~l~~~~~~~~~~~r~~~ 338 (433)
.++.|.++++++++.+++-++.|||++
T Consensus 61 AyVLVG~Gv~LLLLSICL~IR~KRr~r 87 (233)
T PF15345_consen 61 AYVLVGSGVALLLLSICLSIRDKRRRR 87 (233)
T ss_pred EEehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 333344455555555555554444433
No 446
>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]
Probab=81.07 E-value=0.72 Score=44.32 Aligned_cols=49 Identities=10% Similarity=0.064 Sum_probs=36.6
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhccc
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLIS 430 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H 430 (433)
..+|+|.||.|-+..-. .+..||||.++....- ..+-.-||++|.+|.+
T Consensus 95 ~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kY------reAa~iEi~vLqki~~ 144 (415)
T KOG0671|consen 95 DLLGEGTFGKVVECWDRETKEHVALKIIKNVDKY------REAALIEIEVLQKINE 144 (415)
T ss_pred hhhcCCcccceEEEeecCCCceehHHHHHHHHHH------hhHHHHHHHHHHHHHh
Confidence 67999999999986542 3788999999643321 3557789999988743
No 447
>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A.
Probab=80.81 E-value=3 Score=39.22 Aligned_cols=53 Identities=23% Similarity=0.264 Sum_probs=39.5
Q ss_pred hhhcCCCCcEEEEEEeCC-CCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhccc
Q 013931 376 NVIGSSPIGTVYKGTLSN-GVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLIS 430 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~-g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H 430 (433)
..||.|+|+.||.++-.+ |+.+|||...... +.+....+++.+|.-....+.|
T Consensus 18 ~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~--~~~~~~~~~~~~e~l~~~~~~~ 71 (288)
T PF14531_consen 18 RIIGKGGFSIVFEVTDVETGEEFAVKVFLLPA--DASANEYEQLKEEQLAITLFPG 71 (288)
T ss_dssp EEEEEETTEEEEEEEETTTTEEEEEEEEEESS--TTHTTHHHHHHHHHHGGGGSTT
T ss_pred cccccCCceEEEEEEEccCCceEEEEEEeccc--ccchHHHHHHHHHHHHhhhhcc
Confidence 689999999999999854 8999999985444 3334456788888766655433
No 448
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.75 E-value=0.45 Score=26.17 Aligned_cols=12 Identities=42% Similarity=0.506 Sum_probs=4.3
Q ss_pred CCcEEEccCCCC
Q 013931 146 SLTILLLDNNDF 157 (433)
Q Consensus 146 ~L~~L~l~~N~l 157 (433)
+|++|+|++|.|
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 344444444443
No 449
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.49 E-value=1 Score=25.43 Aligned_cols=16 Identities=31% Similarity=0.654 Sum_probs=8.0
Q ss_pred cCceeecccccCCCCCc
Q 013931 122 ELEVLDFGHNNFSGPLP 138 (433)
Q Consensus 122 ~L~~L~ls~N~l~~~~p 138 (433)
+|+.|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 3455555555554 444
No 450
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=80.46 E-value=0.47 Score=46.05 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=28.0
Q ss_pred HHHHHHh-hhhhhhcCCCCcEEEEEEeCC-CCEEEEEEeee
Q 013931 366 ELEAACE-DFSNVIGSSPIGTVYKGTLSN-GVEIAVASVSV 404 (433)
Q Consensus 366 el~~at~-~f~~~iG~G~fG~VYkg~l~~-g~~VAVK~l~~ 404 (433)
+..+||+ ||-.+||+|+||+|..|+-.+ .+..|||.|+.
T Consensus 344 d~i~~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkK 384 (683)
T KOG0696|consen 344 DRIKATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKK 384 (683)
T ss_pred cceeecccceEEEeccCccceeeeecccCcchhhhhhhhcc
Confidence 3344433 444999999999999998743 34579999864
No 451
>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]
Probab=79.69 E-value=0.43 Score=49.09 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=41.7
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
..+|.|.||.|||+.- ..|...|||.++...+.+ -.-.+.||-++...+|.
T Consensus 21 qrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd-----~~~iqqei~~~~dc~h~ 72 (829)
T KOG0576|consen 21 QRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDD-----FSGIQQEIGMLRDCRHP 72 (829)
T ss_pred eeecCCcccchhhhcccccCchhhheeeeccCCcc-----ccccccceeeeecCCCc
Confidence 5689999999999985 468889999998766655 35678899999888885
No 452
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.61 E-value=1.4 Score=24.97 Aligned_cols=14 Identities=36% Similarity=0.584 Sum_probs=6.7
Q ss_pred CcCceeecccccCC
Q 013931 121 EELEVLDFGHNNFS 134 (433)
Q Consensus 121 ~~L~~L~ls~N~l~ 134 (433)
++|+.|+|++|+|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34455555555443
No 453
>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=79.57 E-value=2.3 Score=42.39 Aligned_cols=48 Identities=17% Similarity=0.092 Sum_probs=37.0
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI 429 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~ 429 (433)
++||=|.|.+||.+.= .+.+.||+|..+.. +.-...-+.||++|.+++
T Consensus 84 rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA------qhYtEaAlDEIklL~~v~ 132 (590)
T KOG1290|consen 84 RKLGWGHFSTVWLAWDTQNKRYVALKVVKSA------QHYTEAALDEIKLLQQVR 132 (590)
T ss_pred EeccccccceeEEEeeccCCeEEEEEEEehh------hHHHHHHHHHHHHHHHHH
Confidence 7899999999999874 35678999998632 222456789999998765
No 454
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=79.27 E-value=2 Score=43.15 Aligned_cols=47 Identities=17% Similarity=0.141 Sum_probs=35.2
Q ss_pred hhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcc
Q 013931 377 VIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLI 429 (433)
Q Consensus 377 ~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~ 429 (433)
-.|+|-|++|.+|.- ..|+.||||.|.... .+.+.=+.|+++|.++.
T Consensus 439 ~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE------~M~KtGl~EleiLkKL~ 486 (752)
T KOG0670|consen 439 YTGKGVFSTVVRARDQARGQEVAIKIIRNNE------VMHKTGLKELEILKKLN 486 (752)
T ss_pred ccccceeeeeeeccccCCCCeeEEEEeecch------HHhhhhhHHHHHHHHhh
Confidence 358999999999874 358899999996322 23456678888888754
No 455
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=75.41 E-value=18 Score=38.19 Aligned_cols=10 Identities=10% Similarity=0.205 Sum_probs=5.4
Q ss_pred CCCCCHHHHH
Q 013931 359 VPKLKRSELE 368 (433)
Q Consensus 359 ~~~~~~~el~ 368 (433)
.-+..|+||.
T Consensus 710 S~rmpyeeik 719 (1102)
T KOG1924|consen 710 SFRMPYEEIK 719 (1102)
T ss_pred hccCCHHHHH
Confidence 3345666654
No 456
>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]
Probab=72.94 E-value=8.8 Score=35.62 Aligned_cols=42 Identities=12% Similarity=0.275 Sum_probs=31.4
Q ss_pred hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHH
Q 013931 376 NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVI 423 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~ 423 (433)
+.+|+|.||.+..++-+ ..+.|++|-+... .-..++|.+|-.
T Consensus 30 k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p------~tt~~dF~rEfh 72 (378)
T KOG1345|consen 30 KQLGEGRFGKILLAEHRQSKTRIVLKAVPRP------QTTQADFVREFH 72 (378)
T ss_pred HHhcccceeeEEeeeccCCceEEEeeccCcc------hhhHHHHHHHhc
Confidence 78999999999998875 4567888877421 222688998864
No 457
>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]
Probab=70.75 E-value=0.68 Score=46.34 Aligned_cols=56 Identities=14% Similarity=0.256 Sum_probs=42.5
Q ss_pred hhhh--hhhcCCCCcEEEEEEeC-CCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 372 EDFS--NVIGSSPIGTVYKGTLS-NGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 372 ~~f~--~~iG~G~fG~VYkg~l~-~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
++|. .++|.||||+|+.+... |+-..|||+|..... ........+|+..++++.|.
T Consensus 49 ~~~e~~~~~~~~g~~~~~~~~n~~d~~~~avkritlkn~----e~s~~rvl~~~~s~a~feh~ 107 (516)
T KOG1033|consen 49 NDFEPGQCLGRGGFGVVFSAQNKADENKYAVKRITLKNR----EESRSRVLREVSSLAEFEHP 107 (516)
T ss_pred ccccccccccccCccccCCccccccchhhHHHHhcccch----hhhhhhhhccccchhhhccc
Confidence 4455 78999999999998875 455789999964333 22356788999999998886
No 458
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.60 E-value=0.71 Score=40.57 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=18.2
Q ss_pred EEEEEecCCCCcccCcccccCCCCCcEEEeeCCc
Q 013931 75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNS 108 (433)
Q Consensus 75 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~ 108 (433)
|+.+|-++..|..+-=+.+.+++.++.|.+.++.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 5666666666554333345555555555555543
No 459
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=70.33 E-value=0.17 Score=51.22 Aligned_cols=60 Identities=20% Similarity=0.313 Sum_probs=27.9
Q ss_pred EEEEEecCCCCcc----cCcccccCCCCCcEEEeeCCcccc----cCccc----cCCCCcCceeecccccCC
Q 013931 75 VVNLNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSG----IIPEG----FGELEELEVLDFGHNNFS 134 (433)
Q Consensus 75 l~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~N~l~~----~~p~~----~~~l~~L~~L~ls~N~l~ 134 (433)
+++|++..|.+++ .+.+.+.....|+.|+++.|.+.. .++.. +....++++|.|++|.++
T Consensus 146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 4445555555542 233344445555566666555521 01112 223455555555555544
No 460
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=69.68 E-value=3.2 Score=23.78 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=6.9
Q ss_pred CCcEEEeeCCccc
Q 013931 98 HIKSIILRNNSFS 110 (433)
Q Consensus 98 ~L~~L~L~~N~l~ 110 (433)
+|++|||++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555553
No 461
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=68.93 E-value=29 Score=36.76 Aligned_cols=11 Identities=55% Similarity=0.724 Sum_probs=4.8
Q ss_pred CcEEEccCCCC
Q 013931 147 LTILLLDNNDF 157 (433)
Q Consensus 147 L~~L~l~~N~l 157 (433)
|++|-|-+|.+
T Consensus 408 LQhlllirnDy 418 (1102)
T KOG1924|consen 408 LQHLLLIRNDY 418 (1102)
T ss_pred HHHHHHHhhhh
Confidence 44444444443
No 462
>PRK10345 hypothetical protein; Provisional
Probab=68.92 E-value=4.2 Score=36.42 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=21.1
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeeec
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSVA 405 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~ 405 (433)
..||+|+||.||+ .-.++.. +||++...
T Consensus 8 ~~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~ 35 (210)
T PRK10345 8 SPLGTGRHRKCYA-HPEDAQR-CIKIVYHR 35 (210)
T ss_pred ceecCCCceEEEE-CCCCcCe-EEEEEecc
Confidence 6799999999997 3335544 79988654
No 463
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=68.62 E-value=5.4 Score=30.75 Aligned_cols=10 Identities=30% Similarity=0.225 Sum_probs=4.2
Q ss_pred EEEhhHHHHH
Q 013931 311 AILGGVIGGA 320 (433)
Q Consensus 311 ~ii~~v~~~~ 320 (433)
+|++++++++
T Consensus 67 aiagi~vg~~ 76 (96)
T PTZ00382 67 AIAGISVAVV 76 (96)
T ss_pred cEEEEEeehh
Confidence 3444444433
No 464
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=68.10 E-value=2.8 Score=33.80 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=22.2
Q ss_pred EEEhhHHHHHHHHHHHHHHHhhhhccccCcCC
Q 013931 311 AILGGVIGGAILLVATVGIYLCRCNKVSTVKP 342 (433)
Q Consensus 311 ~ii~~v~~~~~~l~~~~~~~~~~~r~~~~~~~ 342 (433)
.|+++++++++.+++.++++++..||++++..
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~ 96 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLRKKSS 96 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 56777777777777878888888888876643
No 465
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=67.77 E-value=2.3 Score=42.87 Aligned_cols=109 Identities=14% Similarity=0.034 Sum_probs=59.5
Q ss_pred CEEEEEecCCCCccc--CcccccCCCCCcEEEeeCC-cccccC----ccccCCCCcCceeeccccc-CCCCCchhcc-CC
Q 013931 74 KVVNLNLKDLCLEGT--LAPEIQSLTHIKSIILRNN-SFSGII----PEGFGELEELEVLDFGHNN-FSGPLPNDLG-IN 144 (433)
Q Consensus 74 ~l~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~N-~l~~~~----p~~~~~l~~L~~L~ls~N~-l~~~~p~~~~-~l 144 (433)
.++.|.+.++.-... +-.....++.|+.|+++++ ...... ......+.+|+.|++++.. ++...-..+. .+
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence 455555555532212 2234566778888888763 111111 1233456778888888776 4422222233 26
Q ss_pred CCCcEEEccCCC-Cccc-CchhhhCCCCCCEEEccCCCCC
Q 013931 145 HSLTILLLDNND-FVGS-LSPEIYKLQVLSESQVDEGQLS 182 (433)
Q Consensus 145 ~~L~~L~l~~N~-l~~~-~p~~l~~l~~L~~L~l~~n~l~ 182 (433)
++|+.|.+.++. ++.. +-.....+++|++|+++++...
T Consensus 269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 788888866665 3321 2223445677888888876543
No 466
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=67.20 E-value=5.5 Score=36.90 Aligned_cols=6 Identities=33% Similarity=0.595 Sum_probs=3.4
Q ss_pred Ccccee
Q 013931 64 SWFGVE 69 (433)
Q Consensus 64 ~w~gv~ 69 (433)
...||.
T Consensus 42 nlsGi~ 47 (278)
T PF06697_consen 42 NLSGIE 47 (278)
T ss_pred cccceE
Confidence 446666
No 467
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=66.90 E-value=8.6 Score=33.99 Aligned_cols=6 Identities=33% Similarity=0.445 Sum_probs=2.2
Q ss_pred EhhHHH
Q 013931 313 LGGVIG 318 (433)
Q Consensus 313 i~~v~~ 318 (433)
+++|+|
T Consensus 41 iaiVAG 46 (221)
T PF08374_consen 41 IAIVAG 46 (221)
T ss_pred eeeecc
Confidence 333333
No 468
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=66.13 E-value=3.8 Score=33.59 Aligned_cols=10 Identities=10% Similarity=0.006 Sum_probs=4.5
Q ss_pred hhhhccccCc
Q 013931 331 LCRCNKVSTV 340 (433)
Q Consensus 331 ~~~~r~~~~~ 340 (433)
++++++|+++
T Consensus 19 ~~~~~rRR~r 28 (130)
T PF12273_consen 19 FYCHNRRRRR 28 (130)
T ss_pred HHHHHHHHhh
Confidence 3444555444
No 469
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=64.84 E-value=71 Score=27.28 Aligned_cols=6 Identities=33% Similarity=0.257 Sum_probs=2.8
Q ss_pred HHHhhh
Q 013931 328 GIYLCR 333 (433)
Q Consensus 328 ~~~~~~ 333 (433)
.+...+
T Consensus 116 ~~R~r~ 121 (163)
T PF06679_consen 116 TFRLRR 121 (163)
T ss_pred HHhhcc
Confidence 355544
No 470
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.62 E-value=1.6 Score=38.50 Aligned_cols=84 Identities=17% Similarity=0.138 Sum_probs=56.9
Q ss_pred CCCcEEEeeCCcccccCccccCCCCcCceeecccccCCCC-Cchhcc-CCCCCcEEEccCCC-CcccCchhhhCCCCCCE
Q 013931 97 THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP-LPNDLG-INHSLTILLLDNND-FVGSLSPEIYKLQVLSE 173 (433)
Q Consensus 97 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~~~-~l~~L~~L~l~~N~-l~~~~p~~l~~l~~L~~ 173 (433)
..++.+|-++..|..+--+.+.+++.|+.|.+.++.--+. --+.++ -.++|+.|+|++|. |+..=-..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3478889999988876667788888888888877753211 001122 24689999999884 55322335778889988
Q ss_pred EEccCCC
Q 013931 174 SQVDEGQ 180 (433)
Q Consensus 174 L~l~~n~ 180 (433)
|++.+=.
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 8876643
No 471
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=61.94 E-value=0.27 Score=49.80 Aligned_cols=108 Identities=24% Similarity=0.293 Sum_probs=71.5
Q ss_pred EEEEEecCCCCccc----CcccccCCCCCcEEEeeCCcccccC----ccccCCC-CcCceeecccccCCC----CCchhc
Q 013931 75 VVNLNLKDLCLEGT----LAPEIQSLTHIKSIILRNNSFSGII----PEGFGEL-EELEVLDFGHNNFSG----PLPNDL 141 (433)
Q Consensus 75 l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~----p~~~~~l-~~L~~L~ls~N~l~~----~~p~~~ 141 (433)
+..|.|.+|.+... +-..+..+..|+.|++++|.+.+.- -..+... ..|++|++..|.++. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 67788888888743 2334667788889999999887321 1223333 556778888877764 344556
Q ss_pred cCCCCCcEEEccCCCCc--c--cCchhhh----CCCCCCEEEccCCCCC
Q 013931 142 GINHSLTILLLDNNDFV--G--SLSPEIY----KLQVLSESQVDEGQLS 182 (433)
Q Consensus 142 ~~l~~L~~L~l~~N~l~--~--~~p~~l~----~l~~L~~L~l~~n~l~ 182 (433)
.....|+.++++.|.+. | .++..+. ...++++|++++|.++
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 66677888888888773 1 1223333 4667888888888877
No 472
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=61.68 E-value=3.2 Score=39.18 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhhhcc
Q 013931 322 LLVATVGIYLCRCNK 336 (433)
Q Consensus 322 ~l~~~~~~~~~~~r~ 336 (433)
+++++++++++|+||
T Consensus 269 VLIMvIIYLILRYRR 283 (299)
T PF02009_consen 269 VLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 473
>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2
Probab=61.38 E-value=13 Score=33.15 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=36.6
Q ss_pred hhhcCCCC-cEEEEEEeCCCCEEEEEEeeecCCCC-----------Cc-----hhHHHHHHHHHHHhhhcc
Q 013931 376 NVIGSSPI-GTVYKGTLSNGVEIAVASVSVASAKD-----------WP-----KNLEVQFRKKVIYQQLLI 429 (433)
Q Consensus 376 ~~iG~G~f-G~VYkg~l~~g~~VAVK~l~~~~~~~-----------~~-----~~~~~~F~~Ev~~L~~l~ 429 (433)
+.||.|.- |.|||.++ +|+..|+|..+...-.. .. ......|..|...-+++.
T Consensus 43 efLg~g~~~~~V~kv~I-~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLk 112 (207)
T PF13095_consen 43 EFLGHGSHDGYVFKVEI-DGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLK 112 (207)
T ss_pred eecCCCCceeEEEEEEE-CCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHH
Confidence 78999999 99999999 88899999932211000 00 011245888888888764
No 474
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=61.26 E-value=8.7 Score=33.96 Aligned_cols=28 Identities=25% Similarity=0.460 Sum_probs=19.7
Q ss_pred CCccEEEEhhHHHHHHHHHHHHHHHhhh
Q 013931 306 SSKHIAILGGVIGGAILLVATVGIYLCR 333 (433)
Q Consensus 306 ~~~~~~ii~~v~~~~~~l~~~~~~~~~~ 333 (433)
.+..++|+++++++++++++++++.+||
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 4567888888888777776666655455
No 475
>PF15069 FAM163: FAM163 family
Probab=60.82 E-value=19 Score=29.68 Aligned_cols=25 Identities=32% Similarity=0.668 Sum_probs=14.8
Q ss_pred cEEEEhhHHHHHHHHHHHHHHHhhh
Q 013931 309 HIAILGGVIGGAILLVATVGIYLCR 333 (433)
Q Consensus 309 ~~~ii~~v~~~~~~l~~~~~~~~~~ 333 (433)
.++|.|++.+.++++++++++.+||
T Consensus 5 TvVItGgILAtVILLcIIaVLCYCR 29 (143)
T PF15069_consen 5 TVVITGGILATVILLCIIAVLCYCR 29 (143)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHh
Confidence 4566677666666665555554444
No 476
>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]
Probab=59.77 E-value=13 Score=34.57 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=38.6
Q ss_pred hhhcCCCCcEEEEEEe-CCCCEEEEEEeeecCCCCCc---hhHHHHHHHHHHHhhhc
Q 013931 376 NVIGSSPIGTVYKGTL-SNGVEIAVASVSVASAKDWP---KNLEVQFRKKVIYQQLL 428 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l-~~g~~VAVK~l~~~~~~~~~---~~~~~~F~~Ev~~L~~l 428 (433)
++||+|+..+|-+... +.|.+.|||++......... .....+=.+|+++|.++
T Consensus 23 eilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv 79 (411)
T KOG0599|consen 23 EILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQV 79 (411)
T ss_pred HHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHh
Confidence 7899999999988665 47889999999765533221 22234568899999885
No 477
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=56.19 E-value=6.6 Score=31.50 Aligned_cols=25 Identities=16% Similarity=0.188 Sum_probs=0.4
Q ss_pred EEEEhhHHHHHHHHH-HHHHHHhhhh
Q 013931 310 IAILGGVIGGAILLV-ATVGIYLCRC 334 (433)
Q Consensus 310 ~~ii~~v~~~~~~l~-~~~~~~~~~~ 334 (433)
++.++..+.++++++ ++.+|++|||
T Consensus 78 ~~pi~~sal~v~lVl~llsg~lv~rr 103 (129)
T PF12191_consen 78 LWPILGSALSVVLVLALLSGFLVWRR 103 (129)
T ss_dssp S-------------------------
T ss_pred ehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 344433333333333 3334444433
No 478
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=55.69 E-value=3.8 Score=41.03 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=0.0
Q ss_pred cEEEEhhHHHHHHHHHH
Q 013931 309 HIAILGGVIGGAILLVA 325 (433)
Q Consensus 309 ~~~ii~~v~~~~~~l~~ 325 (433)
.++++++++++++++++
T Consensus 354 ~l~vVlgvavlivVv~v 370 (439)
T PF02480_consen 354 LLGVVLGVAVLIVVVGV 370 (439)
T ss_dssp -----------------
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 479
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=54.94 E-value=2.8 Score=38.64 Aligned_cols=61 Identities=15% Similarity=0.293 Sum_probs=44.8
Q ss_pred CCHHHHHHHHhhhhhhhcCCCCcEEEEEEeCCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccC
Q 013931 362 LKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISK 431 (433)
Q Consensus 362 ~~~~el~~at~~f~~~iG~G~fG~VYkg~l~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~ 431 (433)
+++.+|... .+|.+...|..|||.+ .|..|++|.|+.. +++..-.++|..|...|.-+.|.
T Consensus 187 id~~~lnl~-----tkl~e~hsgelwrgrw-qgndivakil~vr---~~t~risrdfneefp~lrifshp 247 (448)
T KOG0195|consen 187 IDVSSLNLI-----TKLAESHSGELWRGRW-QGNDIVAKILNVR---EVTARISRDFNEEFPALRIFSHP 247 (448)
T ss_pred cchhhhhhh-----hhhccCCCcccccccc-cCcchhhhhhhhh---hcchhhcchhhhhCcceeeecCC
Confidence 444544443 4688899999999999 7778888888653 33444468999999888877775
No 480
>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in
Probab=54.94 E-value=13 Score=35.50 Aligned_cols=40 Identities=8% Similarity=-0.002 Sum_probs=27.8
Q ss_pred CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 392 SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 392 ~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
.+|+.||||.++...... .......+.+|+++|..++|+.
T Consensus 22 ~~~~~~avK~~~~~~~~~-~~~~~~~~~~E~~il~~l~hp~ 61 (323)
T cd05584 22 DTGKIFAMKVLKKATIVR-NQKDTAHTKAERNILEAVKHPF 61 (323)
T ss_pred CCCCEEEEEEEEHHHHHh-hhhhHHHHHHHHHHHHhCCCCc
Confidence 478999999996422111 1222456889999999999974
No 481
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=54.53 E-value=24 Score=29.58 Aligned_cols=27 Identities=7% Similarity=0.019 Sum_probs=22.5
Q ss_pred hhcCCCCcEEEEEEeCCCCEEEEEEeee
Q 013931 377 VIGSSPIGTVYKGTLSNGVEIAVASVSV 404 (433)
Q Consensus 377 ~iG~G~fG~VYkg~l~~g~~VAVK~l~~ 404 (433)
.|+.|.++.||+... +|..++||....
T Consensus 5 ~l~~G~~~~vy~~~~-~~~~~~lK~~~~ 31 (170)
T cd05151 5 PLKGGMTNKNYRVEV-ANKKYVVRIPGN 31 (170)
T ss_pred ecCCcccCceEEEEE-CCeEEEEEeCCC
Confidence 478899999999997 577899998753
No 482
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=54.10 E-value=26 Score=30.88 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=24.7
Q ss_pred hhhcCCCCcEEEEEEeCCCCEEEEEEeee
Q 013931 376 NVIGSSPIGTVYKGTLSNGVEIAVASVSV 404 (433)
Q Consensus 376 ~~iG~G~fG~VYkg~l~~g~~VAVK~l~~ 404 (433)
..|+.|.++.||+.+..+|..++||....
T Consensus 4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~ 32 (223)
T cd05154 4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPP 32 (223)
T ss_pred eecCCCccceEEEEEecCCcceEEEeCCC
Confidence 35889999999999998778999998753
No 483
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=53.61 E-value=4.3 Score=38.03 Aligned_cols=13 Identities=31% Similarity=0.416 Sum_probs=0.0
Q ss_pred EEhhHHHHHHHHH
Q 013931 312 ILGGVIGGAILLV 324 (433)
Q Consensus 312 ii~~v~~~~~~l~ 324 (433)
|.++|++++++++
T Consensus 150 IpaVVI~~iLLIA 162 (290)
T PF05454_consen 150 IPAVVIAAILLIA 162 (290)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3344434333333
No 484
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.36 E-value=7.6 Score=39.43 Aligned_cols=63 Identities=25% Similarity=0.311 Sum_probs=35.4
Q ss_pred CCCCcEEEeeCCcccccCc---cccCCCCcCceeecccc--cCCCCCchhccCC--CCCcEEEccCCCCcccC
Q 013931 96 LTHIKSIILRNNSFSGIIP---EGFGELEELEVLDFGHN--NFSGPLPNDLGIN--HSLTILLLDNNDFVGSL 161 (433)
Q Consensus 96 l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~ls~N--~l~~~~p~~~~~l--~~L~~L~l~~N~l~~~~ 161 (433)
.+.+..++|++|++.. +. .--..-++|.+|+|++| .+. .-.++..+ ..|++|.|.+|.+...+
T Consensus 217 ~p~i~sl~lsnNrL~~-Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYH-LDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred Ccceeeeecccchhhc-hhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccch
Confidence 4566677778887752 21 11123466778888887 332 11223322 34677778888776543
No 485
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=52.07 E-value=42 Score=29.73 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=6.3
Q ss_pred EEEEhhHHHHHHHHH
Q 013931 310 IAILGGVIGGAILLV 324 (433)
Q Consensus 310 ~~ii~~v~~~~~~l~ 324 (433)
++|+.++++++++++
T Consensus 101 ~lI~lv~~g~~lLla 115 (202)
T PF06365_consen 101 TLIALVTSGSFLLLA 115 (202)
T ss_pred EEEehHHhhHHHHHH
Confidence 444444444333333
No 486
>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate
Probab=51.44 E-value=17 Score=34.46 Aligned_cols=45 Identities=18% Similarity=-0.041 Sum_probs=30.2
Q ss_pred EEEEEEe-CCCCEEEEEEeeecCCCCCchhHHHHHHHHHHHhhhcccCC
Q 013931 385 TVYKGTL-SNGVEIAVASVSVASAKDWPKNLEVQFRKKVIYQQLLISKC 432 (433)
Q Consensus 385 ~VYkg~l-~~g~~VAVK~l~~~~~~~~~~~~~~~F~~Ev~~L~~l~H~~ 432 (433)
.|++..- .+|+.||||++...... ......+..|+++|.+++|+.
T Consensus 14 ~~~~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~~~E~~~l~~l~h~n 59 (318)
T cd05582 14 LVRKITGPDAGQLYAMKVLKKATLK---VRDRVRTKMERDILAEVNHPF 59 (318)
T ss_pred EEEEeccCCCCCEEEEEEEEHHHhh---hhhHHHHHHHHHHHHhCCCCC
Confidence 3454332 37899999999643211 122456889999999999973
No 487
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=51.35 E-value=17 Score=33.87 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=25.9
Q ss_pred hhhhhcCCCCcEEEEEEeCCCCEEEEEEe
Q 013931 374 FSNVIGSSPIGTVYKGTLSNGVEIAVASV 402 (433)
Q Consensus 374 f~~~iG~G~fG~VYkg~l~~g~~VAVK~l 402 (433)
+.++||.|.=+.||.|..+.|..+|||-=
T Consensus 95 iG~~IGvGKEsdVY~~~~~~g~~~~vKfH 123 (304)
T COG0478 95 IGTKIGVGKESDVYVAIDPKGRKVAVKFH 123 (304)
T ss_pred hccccccCccceEEEEECCCCCEEEEEEe
Confidence 34899999999999999999999999853
No 488
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=50.91 E-value=53 Score=30.99 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=10.0
Q ss_pred CCCCcEEEE--EEeCCCCEEEEE
Q 013931 380 SSPIGTVYK--GTLSNGVEIAVA 400 (433)
Q Consensus 380 ~G~fG~VYk--g~l~~g~~VAVK 400 (433)
+|.| +||. |--+.|. +-||
T Consensus 298 eGDf-TVYECPGLAPTGe-MEVk 318 (341)
T PF06809_consen 298 EGDF-TVYECPGLAPTGE-MEVK 318 (341)
T ss_pred CCCe-eEEeCCCCCCCCc-eeee
Confidence 3444 7886 5555554 3444
No 489
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=50.69 E-value=5.1 Score=40.39 Aligned_cols=105 Identities=17% Similarity=0.092 Sum_probs=63.9
Q ss_pred CCCEEEEEecCC-CCcccCc----ccccCCCCCcEEEeeCCc-ccccCccccC-CCCcCceeeccccc-CCCC-Cchhcc
Q 013931 72 DGKVVNLNLKDL-CLEGTLA----PEIQSLTHIKSIILRNNS-FSGIIPEGFG-ELEELEVLDFGHNN-FSGP-LPNDLG 142 (433)
Q Consensus 72 ~~~l~~L~L~~n-~l~~~~p----~~l~~l~~L~~L~L~~N~-l~~~~p~~~~-~l~~L~~L~ls~N~-l~~~-~p~~~~ 142 (433)
..+++.|+++++ ......+ .....+.+|+.|+|++.. ++...-..+. .+++|+.|.+.++. ++.. +-....
T Consensus 213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~ 292 (482)
T KOG1947|consen 213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE 292 (482)
T ss_pred CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH
Confidence 357999999873 2111111 234566889999999988 5533323333 27899999977776 4421 112234
Q ss_pred CCCCCcEEEccCCCCcc--cCchhhhCCCCCCEEEc
Q 013931 143 INHSLTILLLDNNDFVG--SLSPEIYKLQVLSESQV 176 (433)
Q Consensus 143 ~l~~L~~L~l~~N~l~~--~~p~~l~~l~~L~~L~l 176 (433)
.+++|++|+++.+.... .+.....++++|+.|.+
T Consensus 293 ~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 293 RCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 67889999999876541 13333445666666544
No 490
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=50.44 E-value=7.2 Score=37.19 Aligned_cols=9 Identities=11% Similarity=0.132 Sum_probs=3.7
Q ss_pred HHHhhhhcc
Q 013931 328 GIYLCRCNK 336 (433)
Q Consensus 328 ~~~~~~~r~ 336 (433)
++++.|||+
T Consensus 291 aYli~Rrr~ 299 (306)
T PF01299_consen 291 AYLIGRRRS 299 (306)
T ss_pred hheeEeccc
Confidence 344444443
No 491
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=50.17 E-value=18 Score=31.41 Aligned_cols=14 Identities=50% Similarity=0.755 Sum_probs=5.4
Q ss_pred EEEhhHHHHHHHHH
Q 013931 311 AILGGVIGGAILLV 324 (433)
Q Consensus 311 ~ii~~v~~~~~~l~ 324 (433)
.|+++|++++++++
T Consensus 79 ~iivgvi~~Vi~Iv 92 (179)
T PF13908_consen 79 GIIVGVICGVIAIV 92 (179)
T ss_pred eeeeehhhHHHHHH
Confidence 34444433333333
No 492
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.94 E-value=8.8 Score=39.00 Aligned_cols=63 Identities=21% Similarity=0.154 Sum_probs=42.5
Q ss_pred CCCEEEEEecCCCCccc--CcccccCCCCCcEEEeeCC--cccccCccccCC--CCcCceeecccccCCCC
Q 013931 72 DGKVVNLNLKDLCLEGT--LAPEIQSLTHIKSIILRNN--SFSGIIPEGFGE--LEELEVLDFGHNNFSGP 136 (433)
Q Consensus 72 ~~~l~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~N--~l~~~~p~~~~~--l~~L~~L~ls~N~l~~~ 136 (433)
.+.|..|+|++|+|... +..--...++|..|+|++| .+. ...++.+ ...|++|-|.+|.+...
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccc
Confidence 35789999999998721 1122234578999999999 443 2223333 34578999999998743
No 493
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=48.41 E-value=17 Score=28.64 Aligned_cols=15 Identities=7% Similarity=0.111 Sum_probs=7.3
Q ss_pred HHHHHHhhhhccccC
Q 013931 325 ATVGIYLCRCNKVST 339 (433)
Q Consensus 325 ~~~~~~~~~~r~~~~ 339 (433)
+++-++.||.++++.
T Consensus 15 l~asl~~wr~~~rq~ 29 (107)
T PF15330_consen 15 LAASLLAWRMKQRQK 29 (107)
T ss_pred HHHHHHHHHHHhhhc
Confidence 444455555554443
No 494
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=48.37 E-value=35 Score=35.42 Aligned_cols=9 Identities=22% Similarity=0.294 Sum_probs=5.3
Q ss_pred CEEEEEEee
Q 013931 395 VEIAVASVS 403 (433)
Q Consensus 395 ~~VAVK~l~ 403 (433)
+.||||=+.
T Consensus 468 qLIaikPm~ 476 (684)
T PF12877_consen 468 QLIAIKPMA 476 (684)
T ss_pred EEEEecCcC
Confidence 456776653
No 495
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=48.23 E-value=22 Score=26.52 Aligned_cols=8 Identities=25% Similarity=0.555 Sum_probs=3.1
Q ss_pred HHhhhhcc
Q 013931 329 IYLCRCNK 336 (433)
Q Consensus 329 ~~~~~~r~ 336 (433)
|.+|.+|+
T Consensus 52 fvCC~kRk 59 (94)
T PF05393_consen 52 FVCCKKRK 59 (94)
T ss_pred HHHHHHhh
Confidence 33343333
No 496
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=47.66 E-value=16 Score=33.77 Aligned_cols=8 Identities=13% Similarity=0.530 Sum_probs=3.1
Q ss_pred HHhhhhcc
Q 013931 329 IYLCRCNK 336 (433)
Q Consensus 329 ~~~~~~r~ 336 (433)
+++|.+||
T Consensus 278 LYiWlyrr 285 (295)
T TIGR01478 278 LYIWLYRR 285 (295)
T ss_pred HHHHHHHh
Confidence 34443333
No 497
>PHA03265 envelope glycoprotein D; Provisional
Probab=47.07 E-value=22 Score=33.83 Aligned_cols=15 Identities=13% Similarity=-0.064 Sum_probs=8.0
Q ss_pred HHHHHHhhhhccccC
Q 013931 325 ATVGIYLCRCNKVST 339 (433)
Q Consensus 325 ~~~~~~~~~~r~~~~ 339 (433)
.++++++|||||..+
T Consensus 365 g~il~~~~rr~k~~~ 379 (402)
T PHA03265 365 GVILYVCLRRKKELK 379 (402)
T ss_pred hHHHHHHhhhhhhhh
Confidence 344456666665443
No 498
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=43.94 E-value=33 Score=30.02 Aligned_cols=49 Identities=10% Similarity=0.120 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCcc---------EEEEhhHHHHHHHHHHHHHHHhhhhcccc
Q 013931 290 IPRPSSSQSHQKSGGSSSKH---------IAILGGVIGGAILLVATVGIYLCRCNKVS 338 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~---------~~ii~~v~~~~~~l~~~~~~~~~~~r~~~ 338 (433)
...+.......+........ .++|++-++.+++++++++++++.||+|+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~laI~lPvvv~~~~~~~~~~~~~~R~~Rr 187 (189)
T PF14610_consen 130 TSKPDLHPQDPPPSPSPNGLDEGGSDGKYALAIALPVVVVVLALIMYGFFFWNRKKRR 187 (189)
T ss_pred ecCCcccccCcccccCCCcccccccccceeEEEEccHHHHHHHHHHHhhheeecccee
No 499
>PTZ00046 rifin; Provisional
Probab=43.01 E-value=12 Score=35.94 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=0.0
Q ss_pred EEEhhHHHHHHHHHHHHHHHhhhhccccCcC
Q 013931 311 AILGGVIGGAILLVATVGIYLCRCNKVSTVK 341 (433)
Q Consensus 311 ~ii~~v~~~~~~l~~~~~~~~~~~r~~~~~~ 341 (433)
+++.+++..++++++++++++.|+||+++.+
T Consensus 317 IiaSiiAIvVIVLIMvIIYLILRYRRKKKMk 347 (358)
T PTZ00046 317 IIASIVAIVVIVLIMVIIYLILRYRRKKKMK 347 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhH
No 500
>PTZ00370 STEVOR; Provisional
Probab=41.54 E-value=21 Score=33.14 Aligned_cols=27 Identities=4% Similarity=-0.011 Sum_probs=0.0
Q ss_pred EhhHHHHHHHHHHHHHHHhhhhccccC
Q 013931 313 LGGVIGGAILLVATVGIYLCRCNKVST 339 (433)
Q Consensus 313 i~~v~~~~~~l~~~~~~~~~~~r~~~~ 339 (433)
|++++..++.++++++.+|.+|||++.
T Consensus 259 iaalvllil~vvliilYiwlyrrRK~s 285 (296)
T PTZ00370 259 IAALVLLILAVVLIILYIWLYRRRKNS 285 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcch
Done!