Query 013932
Match_columns 433
No_of_seqs 155 out of 298
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:50:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2754 Oligosaccharyltransfer 100.0 3E-138 7E-143 1014.9 37.5 416 13-433 11-430 (443)
2 PF03345 DDOST_48kD: Oligosacc 100.0 6E-132 1E-136 1016.6 41.7 395 32-433 1-411 (423)
3 TIGR03521 GldG gliding-associa 99.7 6.2E-16 1.4E-20 166.3 17.4 257 26-293 179-505 (552)
4 PF09822 ABC_transp_aux: ABC-t 98.9 3.9E-09 8.5E-14 103.7 9.8 107 25-144 141-271 (271)
5 KOG3861 Sensory cilia assembly 98.7 1.1E-07 2.3E-12 93.6 11.3 171 80-285 54-243 (438)
6 COG3225 GldG ABC-type uncharac 96.4 0.037 8.1E-07 58.5 12.3 59 236-299 431-489 (538)
7 PF14258 DUF4350: Domain of un 95.4 0.05 1.1E-06 42.3 6.1 65 43-115 5-70 (70)
8 PF09960 DUF2194: Uncharacteri 94.9 0.079 1.7E-06 57.9 7.9 95 31-137 55-155 (585)
9 cd03142 GATase1_ThuA Type 1 gl 93.5 0.25 5.4E-06 47.4 7.4 72 43-115 23-95 (215)
10 PF01835 A2M_N: MG2 domain; I 92.8 1.9 4.2E-05 35.4 10.9 73 304-379 8-87 (99)
11 PF08532 Glyco_hydro_42M: Beta 91.1 0.45 9.7E-06 45.0 5.8 60 45-118 32-94 (207)
12 KOG4266 Subtilisin kexin isozy 89.9 2.8 6.1E-05 45.8 10.9 97 43-149 646-772 (1033)
13 cd03143 A4_beta-galactosidase_ 89.2 0.8 1.7E-05 40.8 5.5 60 43-113 26-85 (154)
14 PF06283 ThuA: Trehalose utili 89.1 1.1 2.4E-05 42.5 6.7 204 31-281 1-216 (217)
15 COG5426 Uncharacterized membra 88.9 0.85 1.8E-05 43.0 5.5 70 47-116 36-118 (254)
16 PRK05568 flavodoxin; Provision 88.6 5.4 0.00012 34.8 10.3 102 30-137 2-116 (142)
17 PF00630 Filamin: Filamin/ABP2 86.2 2.5 5.4E-05 34.6 6.3 68 308-379 18-92 (101)
18 PF07090 DUF1355: Protein of u 81.7 1.1 2.4E-05 41.8 2.6 73 47-119 31-112 (177)
19 PRK05569 flavodoxin; Provision 80.8 16 0.00035 31.7 9.7 101 30-136 2-116 (141)
20 PF13115 YtkA: YtkA-like 79.9 9.5 0.0002 30.4 7.2 62 308-375 18-85 (86)
21 PF10634 Iron_transport: Fe2+ 79.1 6.3 0.00014 35.8 6.4 70 309-381 39-120 (151)
22 TIGR01753 flav_short flavodoxi 79.0 22 0.00049 30.4 9.9 102 32-137 1-116 (140)
23 PRK06756 flavodoxin; Provision 76.3 26 0.00056 30.8 9.7 102 30-137 2-120 (148)
24 PRK06703 flavodoxin; Provision 76.0 31 0.00067 30.5 10.1 101 31-137 3-119 (151)
25 PF13380 CoA_binding_2: CoA bi 75.3 26 0.00056 30.0 9.0 82 47-135 18-106 (116)
26 TIGR01755 flav_wrbA NAD(P)H:qu 74.3 25 0.00055 32.9 9.5 103 31-137 2-142 (197)
27 PRK11780 isoprenoid biosynthes 73.7 15 0.00031 35.3 7.8 37 30-66 2-43 (217)
28 COG2998 TupB ABC-type tungstat 71.1 23 0.0005 34.6 8.3 59 232-293 203-261 (280)
29 cd05879 Ig_P0 Immunoglobulin ( 70.9 7.3 0.00016 33.5 4.6 20 350-369 87-107 (116)
30 smart00557 IG_FLMN Filamin-typ 70.2 25 0.00054 28.6 7.5 63 308-379 15-78 (93)
31 cd03132 GATase1_catalase Type 68.1 49 0.0011 28.7 9.4 105 29-140 1-120 (142)
32 PRK09271 flavodoxin; Provision 65.9 25 0.00053 31.7 7.2 84 31-116 2-93 (160)
33 PF03358 FMN_red: NADPH-depend 64.4 34 0.00073 30.0 7.7 110 31-144 2-148 (152)
34 PRK11070 ssDNA exonuclease Rec 63.5 51 0.0011 36.3 10.3 52 90-149 111-163 (575)
35 PRK07308 flavodoxin; Validated 61.5 61 0.0013 28.4 8.8 101 31-137 3-119 (146)
36 cd01653 GATase1 Type 1 glutami 59.5 37 0.00079 26.2 6.4 56 33-89 2-57 (115)
37 cd03128 GAT_1 Type 1 glutamine 59.4 43 0.00093 24.5 6.6 78 34-112 3-83 (92)
38 PRK03767 NAD(P)H:quinone oxido 58.9 75 0.0016 29.6 9.4 103 31-137 3-143 (200)
39 COG4635 HemG Flavodoxin [Energ 56.5 15 0.00034 33.8 4.0 68 31-107 2-72 (175)
40 PF06051 DUF928: Domain of Unk 51.3 28 0.00061 32.6 5.1 41 327-376 41-81 (189)
41 PF13344 Hydrolase_6: Haloacid 51.1 38 0.00083 28.1 5.4 31 99-133 68-101 (101)
42 PF10354 DUF2431: Domain of un 50.1 93 0.002 28.5 8.2 101 36-137 29-150 (166)
43 TIGR01754 flav_RNR ribonucleot 49.7 1.7E+02 0.0037 25.4 9.6 96 31-131 2-111 (140)
44 cd03134 GATase1_PfpI_like A ty 48.8 51 0.0011 29.2 6.2 96 31-132 1-112 (165)
45 PRK07053 glutamine amidotransf 47.5 1.1E+02 0.0024 29.5 8.7 98 30-137 3-107 (234)
46 PRK06490 glutamine amidotransf 46.6 89 0.0019 30.3 7.9 100 27-136 5-109 (239)
47 cd08374 C2F_Ferlin C2 domain s 46.6 32 0.0007 30.5 4.4 39 340-378 23-63 (133)
48 PRK06242 flavodoxin; Provision 46.0 72 0.0016 27.8 6.6 57 76-136 41-107 (150)
49 PF08468 MTS_N: Methyltransfer 45.8 21 0.00047 32.4 3.2 51 76-131 67-122 (155)
50 PRK06934 flavodoxin; Provision 45.0 1.1E+02 0.0025 29.5 8.2 54 74-131 125-185 (221)
51 PRK10569 NAD(P)H-dependent FMN 45.0 1.4E+02 0.003 27.9 8.6 95 46-144 21-141 (191)
52 cd02071 MM_CoA_mut_B12_BD meth 44.4 62 0.0013 27.7 5.8 84 47-133 18-104 (122)
53 PRK05452 anaerobic nitric oxid 44.3 1.8E+02 0.0039 31.3 10.5 105 28-136 250-369 (479)
54 PRK04165 acetyl-CoA decarbonyl 42.7 50 0.0011 35.3 5.9 82 83-165 264-346 (450)
55 TIGR00566 trpG_papA glutamine 41.6 85 0.0018 29.0 6.7 92 33-136 2-95 (188)
56 PRK11104 hemG protoporphyrinog 41.3 71 0.0015 29.3 6.1 67 31-106 2-70 (177)
57 PF04244 DPRP: Deoxyribodipyri 41.1 46 0.00099 32.2 4.9 39 29-67 21-73 (224)
58 PLN02931 nucleoside diphosphat 40.6 55 0.0012 30.5 5.2 51 11-61 8-62 (177)
59 PLN02335 anthranilate synthase 40.5 43 0.00093 32.1 4.6 60 26-89 14-73 (222)
60 PF03633 Glyco_hydro_65C: Glyc 40.5 27 0.00059 25.5 2.5 34 363-396 2-35 (54)
61 PF05753 TRAP_beta: Translocon 40.3 2.5E+02 0.0054 26.2 9.5 113 306-430 46-169 (181)
62 TIGR00537 hemK_rel_arch HemK-r 39.1 1.5E+02 0.0033 26.7 7.9 37 99-135 124-161 (179)
63 PHA02909 hypothetical protein; 38.6 9.6 0.00021 28.8 -0.2 22 410-431 25-47 (72)
64 PF13709 DUF4159: Domain of un 38.1 72 0.0016 30.3 5.7 52 78-130 53-108 (207)
65 cd03147 GATase1_Ydr533c_like T 37.9 1.2E+02 0.0026 29.2 7.3 69 43-112 25-130 (231)
66 TIGR00644 recJ single-stranded 37.1 2.5E+02 0.0055 30.6 10.4 91 29-148 54-146 (539)
67 COG3019 Predicted metal-bindin 37.0 2.3E+02 0.0049 25.7 8.1 69 47-118 41-113 (149)
68 PRK06774 para-aminobenzoate sy 36.8 1.1E+02 0.0024 28.2 6.6 92 33-136 2-95 (191)
69 PRK07649 para-aminobenzoate/an 36.8 1.2E+02 0.0025 28.5 6.8 94 33-137 2-96 (195)
70 PF15260 FAM219A: Protein fami 36.7 22 0.00047 31.1 1.7 49 23-72 40-104 (125)
71 cd02858 Esterase_N_term Estera 35.4 68 0.0015 25.7 4.4 45 327-375 13-58 (85)
72 cd03169 GATase1_PfpI_1 Type 1 34.9 1.8E+02 0.0039 26.2 7.7 36 31-66 1-36 (180)
73 TIGR02336 1,3-beta-galactosyl- 34.1 86 0.0019 35.2 6.1 95 44-144 469-574 (719)
74 TIGR01467 cobI_cbiL precorrin- 33.6 2E+02 0.0043 27.3 8.0 98 28-132 89-191 (230)
75 PRK11249 katE hydroperoxidase 33.3 1.8E+02 0.0039 33.3 8.6 105 27-137 595-716 (752)
76 cd01750 GATase1_CobQ Type 1 gl 33.1 91 0.002 29.0 5.4 61 42-112 9-76 (194)
77 COG0426 FpaA Uncharacterized f 32.9 3.5E+02 0.0077 28.4 10.1 106 31-137 248-363 (388)
78 PF11896 DUF3416: Domain of un 32.3 54 0.0012 30.8 3.7 65 306-379 22-90 (187)
79 COG2248 Predicted hydrolase (m 32.2 2.6E+02 0.0056 28.0 8.3 96 42-147 117-248 (304)
80 PRK04155 chaperone protein Hch 32.0 1.7E+02 0.0036 29.4 7.4 38 29-66 49-100 (287)
81 PHA03392 egt ecdysteroid UDP-g 32.0 43 0.00093 36.2 3.4 38 28-65 19-58 (507)
82 PRK11921 metallo-beta-lactamas 31.7 3.8E+02 0.0082 27.8 10.3 106 28-137 246-366 (394)
83 TIGR01465 cobM_cbiF precorrin- 31.4 1.9E+02 0.0042 27.1 7.5 102 29-133 71-180 (229)
84 PRK06895 putative anthranilate 31.2 78 0.0017 29.2 4.6 50 31-87 3-52 (190)
85 PRK06015 keto-hydroxyglutarate 31.1 2.1E+02 0.0047 27.1 7.6 100 29-137 3-103 (201)
86 PF15020 CATSPERD: Cation chan 31.0 94 0.002 35.1 5.8 61 361-427 643-703 (733)
87 cd02861 E_set_proteins_like E 31.0 51 0.0011 26.1 2.9 28 349-376 29-56 (82)
88 TIGR03567 FMN_reduc_SsuE FMN r 30.7 4E+02 0.0087 24.0 10.1 88 47-137 21-134 (171)
89 PF03698 UPF0180: Uncharacteri 30.7 68 0.0015 26.1 3.5 41 42-90 7-47 (80)
90 PRK08811 uroporphyrinogen-III 30.7 2.3E+02 0.0049 27.9 8.0 63 23-89 12-80 (266)
91 PRK01077 cobyrinic acid a,c-di 30.6 1.1E+02 0.0024 32.4 6.2 75 30-112 246-326 (451)
92 PRK11574 oxidative-stress-resi 30.6 2.1E+02 0.0046 26.1 7.5 36 29-64 2-37 (196)
93 COG0626 MetC Cystathionine bet 30.4 1.4E+02 0.0031 31.4 6.8 92 25-120 98-189 (396)
94 COG2247 LytB Putative cell wal 30.3 3E+02 0.0066 28.2 8.8 41 96-136 63-105 (337)
95 PF11869 DUF3389: Protein of u 29.8 57 0.0012 26.2 2.8 31 103-134 36-74 (75)
96 PF02922 CBM_48: Carbohydrate- 28.8 1.2E+02 0.0025 23.7 4.7 52 327-379 18-74 (85)
97 PRK00170 azoreductase; Reviewe 28.0 3.6E+02 0.0078 24.6 8.5 102 31-136 3-170 (201)
98 PRK13527 glutamine amidotransf 27.7 89 0.0019 29.1 4.4 90 31-131 2-95 (200)
99 TIGR00768 rimK_fam alpha-L-glu 27.5 1.7E+02 0.0037 27.9 6.5 97 31-136 1-105 (277)
100 PRK08007 para-aminobenzoate sy 27.3 1.8E+02 0.004 26.8 6.4 94 33-136 2-95 (187)
101 PF09419 PGP_phosphatase: Mito 27.1 1.4E+02 0.003 27.6 5.4 67 51-134 35-109 (168)
102 CHL00101 trpG anthranilate syn 27.0 1.5E+02 0.0033 27.3 5.8 93 33-136 2-95 (190)
103 cd02067 B12-binding B12 bindin 26.9 1.4E+02 0.0031 25.0 5.2 83 47-133 18-104 (119)
104 PRK10653 D-ribose transporter 26.9 3.6E+02 0.0078 25.9 8.8 49 13-62 11-62 (295)
105 COG4090 Uncharacterized protei 26.9 85 0.0018 28.0 3.7 49 51-111 69-117 (154)
106 PRK09754 phenylpropionate diox 26.9 1.9E+02 0.0042 29.6 7.1 70 64-133 86-169 (396)
107 COG3470 Tpd Uncharacterized pr 26.5 89 0.0019 28.7 3.8 22 310-331 64-92 (179)
108 COG4567 Response regulator con 26.3 44 0.00096 30.7 1.9 52 29-82 8-59 (182)
109 PRK01372 ddl D-alanine--D-alan 26.2 3.6E+02 0.0078 26.3 8.7 84 46-137 26-116 (304)
110 COG1587 HemD Uroporphyrinogen- 25.9 1.4E+02 0.0031 28.7 5.6 89 29-133 123-224 (248)
111 cd01741 GATase1_1 Subgroup of 25.4 3.3E+02 0.0072 24.6 7.8 43 45-90 13-58 (188)
112 PF06144 DNA_pol3_delta: DNA p 24.9 3.1E+02 0.0068 24.1 7.3 52 81-137 93-147 (172)
113 TIGR00288 conserved hypothetic 24.9 99 0.0022 28.4 4.0 74 47-128 70-150 (160)
114 PF15284 PAGK: Phage-encoded v 24.8 51 0.0011 25.4 1.7 31 1-31 1-33 (61)
115 PRK14582 pgaB outer membrane N 24.5 4.5E+02 0.0097 29.8 9.7 39 96-134 89-135 (671)
116 PRK05752 uroporphyrinogen-III 24.3 2.4E+02 0.0052 27.1 6.9 104 29-136 3-158 (255)
117 PF00919 UPF0004: Uncharacteri 24.2 1.4E+02 0.0029 24.9 4.4 59 44-115 15-76 (98)
118 PF09825 BPL_N: Biotin-protein 23.9 1.8E+02 0.0039 30.3 6.1 156 31-201 2-179 (367)
119 COG0716 FldA Flavodoxins [Ener 23.7 2.6E+02 0.0057 24.6 6.5 74 30-110 2-77 (151)
120 COG2813 RsmC 16S RNA G1207 met 23.6 2E+02 0.0043 29.2 6.1 80 30-117 182-268 (300)
121 TIGR00379 cobB cobyrinic acid 23.6 1.2E+02 0.0026 32.2 5.0 75 30-112 245-325 (449)
122 PF10611 DUF2469: Protein of u 23.5 57 0.0012 27.2 1.9 44 366-411 23-67 (101)
123 PRK08857 para-aminobenzoate sy 23.5 2.7E+02 0.0059 25.7 6.8 94 33-137 2-96 (193)
124 TIGR01382 PfpI intracellular p 23.1 3E+02 0.0065 24.2 6.8 57 31-87 1-69 (166)
125 TIGR00640 acid_CoA_mut_C methy 22.8 1.7E+02 0.0037 25.7 5.0 83 48-133 22-107 (132)
126 TIGR01680 Veg_Stor_Prot vegeta 22.6 2.3E+02 0.0049 28.4 6.3 71 47-117 152-230 (275)
127 PTZ00093 nucleoside diphosphat 22.3 5.2E+02 0.011 23.2 8.1 85 30-131 3-90 (149)
128 PF00072 Response_reg: Respons 22.2 3.6E+02 0.0079 21.2 6.6 79 47-133 13-95 (112)
129 PF05751 FixH: FixH; InterPro 21.8 1.8E+02 0.0038 25.4 5.0 41 347-388 103-143 (146)
130 cd02072 Glm_B12_BD B12 binding 21.8 2.3E+02 0.0051 24.9 5.6 88 47-137 18-116 (128)
131 cd04413 NDPk_I Nucleoside diph 21.6 3.6E+02 0.0079 23.4 6.8 71 30-115 1-74 (130)
132 PHA02127 hypothetical protein 21.4 44 0.00094 24.5 0.7 48 276-323 6-56 (57)
133 PF02310 B12-binding: B12 bind 21.2 2.9E+02 0.0062 22.8 6.0 85 46-133 18-106 (121)
134 PRK08114 cystathionine beta-ly 21.1 2E+02 0.0044 30.1 5.9 90 26-119 98-188 (395)
135 PF00781 DAGK_cat: Diacylglyce 21.1 2E+02 0.0043 24.6 5.0 97 31-137 1-107 (130)
136 PF12724 Flavodoxin_5: Flavodo 21.1 3.3E+02 0.0072 23.7 6.6 65 33-106 1-67 (143)
137 TIGR01675 plant-AP plant acid 20.7 2.6E+02 0.0056 27.1 6.2 70 48-118 128-205 (229)
138 PLN02617 imidazole glycerol ph 20.7 2.3E+02 0.005 31.1 6.4 75 26-112 2-83 (538)
139 TIGR01182 eda Entner-Doudoroff 20.7 3.8E+02 0.0082 25.5 7.2 100 29-137 7-107 (204)
140 cd05803 PGM_like4 This PGM-lik 20.6 3.3E+02 0.0072 28.7 7.5 56 80-137 245-304 (445)
141 cd03084 phosphohexomutase The 20.5 2.9E+02 0.0063 28.0 6.9 55 80-136 186-244 (355)
142 KOG4434 Molecular chaperone SE 20.3 94 0.002 32.4 3.1 77 327-407 414-498 (520)
143 PRK11914 diacylglycerol kinase 20.1 1.5E+02 0.0034 29.3 4.7 95 29-134 8-110 (306)
No 1
>KOG2754 consensus Oligosaccharyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-138 Score=1014.89 Aligned_cols=416 Identities=56% Similarity=0.932 Sum_probs=396.2
Q ss_pred HHhhhhccccccCCCCCCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcC
Q 013932 13 SLIPLFSVAFSPENPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERF 92 (433)
Q Consensus 13 ~~~~~~~~~~~~~s~~~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~ 92 (433)
+||++..+ +...+.|||||+|+..++++||.|+++|++|||+++++.++|+++.|++||+++|||||||+|+++.|
T Consensus 11 llla~~~~----v~~~~~RtLVL~d~~~~~ethSvFl~sLkdRgf~L~~~~a~dssl~L~~Ygq~LyDnlIifap~~e~f 86 (443)
T KOG2754|consen 11 LLLALIGF----VLSQAARTLVLLDNLAVKETHSVFLKSLKDRGFKLTYKLADDSSLALFKYGQRLYDNLIIFAPSVENF 86 (443)
T ss_pred HHHHHHHH----HhcccCcEEEEeeccccccchhhhhhhHHhcCceeEEEecCCchhHHHHhhhHhhccEEEecCchhhc
Confidence 55566653 33445699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecCCCCeEEEeccCccccCCCCCceEEeeccccccceec
Q 013932 93 GGSIDVASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFDEDPAAMVIDHINYAVSNFDGDHTLIASDDFIKADVIL 172 (433)
Q Consensus 93 ~~~ls~~~L~~Fid~GGNlLv~~~~~~~~~lr~ll~elGI~~~p~~~~~VvDhf~~~~~~~~~~~~~i~~~~~i~~~~i~ 172 (433)
|++++++.|.+|+|+|||||+++++..++.||+|++||||+++|+ |+.||||++|+..++.++|+++.++++++++.|+
T Consensus 87 gg~is~k~l~~Fvd~gGnvlv~ass~~~d~iRe~~~E~g~~~~e~-~~~ViDH~~~d~s~~sgdhtli~~~nl~~~~~Iv 165 (443)
T KOG2754|consen 87 GGSISVKSLAKFVDSGGNVLVAASSAIGDAIREFASECGIEFDEE-GAAVIDHHNYDVSSDSGDHTLIVADNLLKAPYIV 165 (443)
T ss_pred CCCCCHHHHHHHHhCCCcEEEEcCCcccHHHHHHHHHhCcccCcc-cceeeeeeeccccCCCCCeEEEeecccccCceee
Confidence 999999999999999999999999999999999999999999999 9999999999988788999999998899999999
Q ss_pred cCCcccCceeeeceeEEecCCCceeEeeeEeCCcceecCCCCCCCCCCCCCCCceeeEEEEEecCCcEEEEEeccccccC
Q 013932 173 GSKKIEAPVLFQGIGHSLNPANSLVLKVLSASSSAYSANPKSKLSNPPSLTGSAISLVSVVQARNNARILITGSLSMFSN 252 (433)
Q Consensus 173 ~~~~~~~~vl~~g~g~~l~~~n~l~~pIL~a~~tsys~~~~~~~~~~~~~~G~~~~Lv~alQ~~nnaRivv~GS~dffSn 252 (433)
++.+...|++|+|+||.++|+||++.|||+|++|||+++|+.+....||++|+|+.||++||+||||||+|+||.|||||
T Consensus 166 g~~~~~~piLfrgig~~l~~~n~lvl~IL~a~~TsYs~np~a~~s~np~a~Gs~~~LV~~lQarNNARvv~sGS~d~fsd 245 (443)
T KOG2754|consen 166 GKSKRAAPILFRGIGHVLGPTNPLVLPILRASPTSYSYNPEAKVSCNPWAAGSQTLLVSGLQARNNARVVFSGSSDFFSD 245 (443)
T ss_pred ccccccCCeeeecchhhcCCCCcceeeeecCCCcceecCcccccccCccccccceEEEEeeeccCCceEEEeccHHhhhc
Confidence 88766689999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred cc---cccccCCcccccccccHHHHHHHhhcccCcCceEEEeeeEEEecCCCCCCc-ceEeCCceEEEEEEEEEeCCeee
Q 013932 253 RS---GVQKAGSSIKHEKSGNEQFLTEISKWVFHERGHLKAVNVRHHKVGESDEPA-IYRINDDLEYSVEIYEWSGTSWE 328 (433)
Q Consensus 253 ~~---~~~~~~~~~~~~~~~N~~f~~~l~~W~F~e~gvLr~~~~~H~~~~~~~~~~-~Y~i~d~v~y~i~i~e~~~~~W~ 328 (433)
++ .++..+++.+..++||++|+.+|.+|+|+|+||||+.++.|||+||+.+|. .|||||+|+|||+|+||++|+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~sgN~~fA~~lskWvF~E~gvLr~~~~~hhkvget~~p~e~Y~IkD~viySI~i~el~~g~w~ 325 (443)
T KOG2754|consen 246 EFFSSQVQSASSSVQYEQSGNQEFATELSKWVFKEKGVLRVGNVVHHKVGETLPPEEAYRIKDDVIYSIGISELSGGEWV 325 (443)
T ss_pred ccccccccccCCcchhhccccHHHHHHHHHhhhcccceEEeeeceecccCCcCCCccceeecccEEEEEEEEEecCCeee
Confidence 93 445556667788999999999999999999999999999999999998776 89999999999999999999999
Q ss_pred eccCCCeEEEEEEeCceEeeccccCCCceEEEEEecCCceeeeEEEEeeeeccceeeeeeeeEeecCCCCCcccccccCC
Q 013932 329 PYVSDDVQVQFYMMSPYVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQRLGYTSLSLSKQIPVRPYRHNEYERFLPAA 408 (433)
Q Consensus 329 P~~~~diQlEf~mldPy~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R~G~t~l~~~~~v~VR~~~hdey~Rfi~~a 408 (433)
||++|||||||+|||||+|++|+|.+.|.|++.||+||+||||||+|||||+|||+|++++|++||||+||||||||++|
T Consensus 326 P~~adDvQlEfv~iDPyvR~tL~~~~~g~~~~~FklPDvyGvFqFkvdY~r~GyT~l~~~~qvsvRpl~h~eYeRfIpsA 405 (443)
T KOG2754|consen 326 PFVADDVQLEFVRIDPYVRTTLKPSGQGYYSAEFKLPDVYGVFQFKVDYRRLGYTHLYDKTQVSVRPLAHTEYERFIPSA 405 (443)
T ss_pred eecccceEEEEEEeCchheeEEecCCCceEEEEEecCCeeceEEEEEecccccceeeeccceEeeeeccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHhhheeeeeccC
Q 013932 409 YPYYGSAFSMMAGFFIFTIVHLYSK 433 (433)
Q Consensus 409 ~pyy~s~~s~~~g~~~F~~~~L~~~ 433 (433)
||||+|||+||+|||+||++||+||
T Consensus 406 ypYyas~fs~m~g~~~Fs~vfL~~k 430 (443)
T KOG2754|consen 406 YPYYASCFSMMAGFFLFSFVFLYHK 430 (443)
T ss_pred chHHHHHHHHHHHHheeeEEEEEec
Confidence 9999999999999999999999997
No 2
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=100.00 E-value=6.2e-132 Score=1016.65 Aligned_cols=395 Identities=53% Similarity=0.921 Sum_probs=372.2
Q ss_pred EEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcE
Q 013932 32 VLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDL 111 (433)
Q Consensus 32 ~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GGNl 111 (433)
||||+|+..++.+||+||++|++|||+|+++.++|++++|+++||++|||||||+|+.+.||++++++.|++|+|+||||
T Consensus 1 ~LVllD~~~~~~~yS~Ff~~L~~rg~~l~~~~~~d~~l~L~~~ge~~YD~LIif~~~~k~~g~~ls~~~ll~Fvd~GgNi 80 (423)
T PF03345_consen 1 TLVLLDNRAIKETYSTFFNSLKERGYELTFKSADDESLSLFKYGERLYDHLIIFPPSVKEFGGSLSPKTLLDFVDNGGNI 80 (423)
T ss_pred CEEEecCccchhhHHHHHHHHHhCCCEEEEecCCCCCcchhhCChhhcceEEEeCCcccccCCCCCHHHHHHHHhCCCcE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCC-CcHHHHHHHHHcCceecCCCCeEEEeccCccccCCCCCceEEe--eccccccceeccCCcccCceeeeceeE
Q 013932 112 IVAADSN-ASDLIREVATECGVDFDEDPAAMVIDHINYAVSNFDGDHTLIA--SDDFIKADVILGSKKIEAPVLFQGIGH 188 (433)
Q Consensus 112 Lv~~~~~-~~~~lr~ll~elGI~~~p~~~~~VvDhf~~~~~~~~~~~~~i~--~~~~i~~~~i~~~~~~~~~vl~~g~g~ 188 (433)
|+++++. .++.+|.||+||||+++|+ |+.|+|||+++..++.++|+.++ .++.+.+..+.+... .|++|+|+||
T Consensus 81 lv~~s~~~~~~~ir~~~~E~gi~~~~~-~~~viDHf~~~~~~~~~~h~~i~~~~~~~i~~~~~~~~~~--~pilf~G~g~ 157 (423)
T PF03345_consen 81 LVAGSSDAIPDSIREFANELGIEFDPK-GSKVIDHFNYDSSSDSEDHTVIVLSSNNLIKSSVIVGFKT--KPILFRGVGH 157 (423)
T ss_pred EEEeCCCcCcHHHHHHHHHCCeEECCC-CCEEEcCCCCcccccccCcceEEecCCccccCcccccCCC--CcEEEEeEEE
Confidence 9999998 9999999999999999998 99999999999776778898888 456777777765533 6899999999
Q ss_pred EecCCCceeEeeeEeCCcceecCCCCCCCC--CCCCCCCceeeEEEEEecCCcEEEEEeccccccCccc---ccccCCcc
Q 013932 189 SLNPANSLVLKVLSASSSAYSANPKSKLSN--PPSLTGSAISLVSVVQARNNARILITGSLSMFSNRSG---VQKAGSSI 263 (433)
Q Consensus 189 ~l~~~n~l~~pIL~a~~tsys~~~~~~~~~--~~~~~G~~~~Lv~alQ~~nnaRivv~GS~dffSn~~~---~~~~~~~~ 263 (433)
+++ +||+++|||+|++|||+++++++... +||++|+|++||+|+|+|||||++|+||.|||||++. ++.. .
T Consensus 158 ~l~-~n~l~~pIL~a~~Tays~~~~~~~~~~~~~~~~G~q~~LVsa~QarNNARv~~~GS~d~fsd~~f~~~v~~~---~ 233 (423)
T PF03345_consen 158 LLD-NNPLVFPILRAPSTAYSYDPKEPIEEYDDPWAAGSQISLVSAFQARNNARVVFSGSLDMFSDEFFDSKVQKA---G 233 (423)
T ss_pred Eec-CCCceeeeeccCCceeccccccccccccchhhccccceEEEEEecccCcEEEEEecHHHhccHHHhhhhhhc---c
Confidence 999 59999999999999999999877664 4999999999999999999999999999999999942 2222 3
Q ss_pred cccccccHHHHHHHhhcccCcCceEEEeeeEEEecCCCC--CCcceEeCCceEEEEEEEEEeCCeeeeccCCCeEEEEEE
Q 013932 264 KHEKSGNEQFLTEISKWVFHERGHLKAVNVRHHKVGESD--EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYM 341 (433)
Q Consensus 264 ~~~~~~N~~f~~~l~~W~F~e~gvLr~~~~~H~~~~~~~--~~~~Y~i~d~v~y~i~i~e~~~~~W~P~~~~diQlEf~m 341 (433)
+..+++|++||++|++|+|||+||||+.+++|||+++++ +|.+|||||+|+|+|+|+||++|+|+||++|||||||+|
T Consensus 234 ~~~~~~N~~f~~~l~~WtF~e~gvLr~~~~~H~~~~~~~~~~p~~Y~I~D~v~ysi~i~e~~~~~WvPf~~dDiQlEf~m 313 (423)
T PF03345_consen 234 KKSKSGNREFAKELSKWTFQEKGVLRVSNVKHHKVGETEYSNPEMYRIKDDVEYSIEISEWNNGKWVPFKADDIQLEFVM 313 (423)
T ss_pred cccchhHHHHHHHHHHhHHhhcCeEeecceEEEeCCCcCcCCCcceEECCcEEEEEEEEEEeCCeEecCCCCcEEEEEEE
Confidence 456899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred eCceEeecccc----CCCceEEEEEecCCceeeeEEEEeeeeccceeeeeeeeEeecCCCCCcccc--cccCCcchhhHH
Q 013932 342 MSPYVLKTLST----DQKGHYSAEFKVPDVYGVFQFKVEYQRLGYTSLSLSKQIPVRPYRHNEYER--FLPAAYPYYGSA 415 (433)
Q Consensus 342 ldPy~R~~l~~----~~~~~y~~~f~~PD~hGvf~f~v~Y~R~G~t~l~~~~~v~VR~~~hdey~R--fi~~a~pyy~s~ 415 (433)
||||+|++|++ .++|+|+++||+|||||||||+|||||+|||+|++++|||||||||||||| ||++|||||+||
T Consensus 314 LDPy~R~~L~~~~~~~~~~~Y~~~FklPD~hGVF~F~vdY~R~G~t~l~~~~~v~VRpl~Hdey~Rs~fI~~A~PYyas~ 393 (423)
T PF03345_consen 314 LDPYVRLTLKPSYSTDDNGTYSTTFKLPDVHGVFTFKVDYKRPGYTFLEEKTQVSVRPLAHDEYPRSWFITNAYPYYASA 393 (423)
T ss_pred cCcEEEcccccccccCCCCEEEEEEECCCccceEEEEEEEecCceeeEEEEEEEeccCCccccCccccccccccHHHHHH
Confidence 99999999998 688999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHhhheeeeeccC
Q 013932 416 FSMMAGFFIFTIVHLYSK 433 (433)
Q Consensus 416 ~s~~~g~~~F~~~~L~~~ 433 (433)
||||+|||+|+++|||++
T Consensus 394 ~s~m~gf~lF~~~fL~~~ 411 (423)
T PF03345_consen 394 FSMMIGFFLFVFVFLYHK 411 (423)
T ss_pred HHHHHHHHhheeeEEEec
Confidence 999999999999999986
No 3
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.68 E-value=6.2e-16 Score=166.28 Aligned_cols=257 Identities=11% Similarity=0.106 Sum_probs=165.1
Q ss_pred CCCCCeEEEEEcCcccccc--hhhHHHHhhcCCcEEEEecCCCCCcccccccc----cccCEEEEeCCCCCcCCCCCCHH
Q 013932 26 NPTDRRVLVLVDDFAIKSS--HSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQ----YLYDALVLFCPSVERFGGSIDVA 99 (433)
Q Consensus 26 s~~~~r~LVl~d~~~~~~~--~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge----~~yd~LII~~p~~~~~~~~ls~~ 99 (433)
+...++++.++.++++... ...|.+.|+ ++|++....++.. ....... ..+|.|||..|+.+ |. .-+..
T Consensus 179 ~~~~~~~V~~l~ghGE~~~~~~~~l~~~L~-~~y~v~~l~l~~~--~~~~~~ip~~l~d~d~LvI~~P~~~-ls-~~e~~ 253 (552)
T TIGR03521 179 INPREKRIAVLKGNGELADLQIADLVSTLK-EYYFIAPFTLDSV--AANPAKTLADLKKFDLIVIAKPTEA-FS-EREKY 253 (552)
T ss_pred hCccCceEEEEeCCCCCChHHHHHHHHHHH-hcCceeeecchhc--ccCcccccccccCcCEEEEeCCCcc-CC-HHHHH
Confidence 3446788888888877533 468899998 8999976533211 0001111 24699999999977 52 24679
Q ss_pred HHHHHHHCCCcEEEEeCCCC------------------cHHHHHHHHHcCceecCCCCeEEEeccCccccCCC---CC--
Q 013932 100 SIVDFVDSGHDLIVAADSNA------------------SDLIREVATECGVDFDEDPAAMVIDHINYAVSNFD---GD-- 156 (433)
Q Consensus 100 ~L~~Fid~GGNlLv~~~~~~------------------~~~lr~ll~elGI~~~p~~~~~VvDhf~~~~~~~~---~~-- 156 (433)
.|.+|+++|||+||+.+|.. ..++..|++++||.+.++ +|+|.......... ++
T Consensus 254 ~Ldqfl~~GG~ll~~~dp~~~~~~~~~~~~g~~~~~~~~~~L~~Ll~~~Gi~~~~~---~V~D~~~~~~~~~~g~~g~~~ 330 (552)
T TIGR03521 254 ILDQYIMNGGKALFLVDAVAMEMDSLYNGDGATFALPRDLNLDDLLFKYGIRINPD---LVEDLNSAPIVLATGNQGNNT 330 (552)
T ss_pred HHHHHHHcCCeEEEEecCcccccccccccCCccccCCCCCCHHHHHHHhCeEeCcC---eEecCcCCceeeecCCcCCcc
Confidence 99999999999999998732 158999999999999997 78995442110000 01
Q ss_pred ----ceEEeec--cccccceeccCCcccCceeeeceeEEecCCCceeEeeeEeCCcceecCCCC-------CCCC--CCC
Q 013932 157 ----HTLIASD--DFIKADVILGSKKIEAPVLFQGIGHSLNPANSLVLKVLSASSSAYSANPKS-------KLSN--PPS 221 (433)
Q Consensus 157 ----~~~i~~~--~~i~~~~i~~~~~~~~~vl~~g~g~~l~~~n~l~~pIL~a~~tsys~~~~~-------~~~~--~~~ 221 (433)
++....+ ..-.+++|+.+ . ...+++.+.++...+++...+|+|++++.||...... +... ...
T Consensus 331 ~~~~~~~~~~p~~~~~~~~piT~~-l-~~v~~~~a~~i~~~~~~~~~tpLL~TS~~s~~~~~~~~i~~~~~~~~~dp~~~ 408 (552)
T TIGR03521 331 QYQPLPWPYYPQVYSFNKHPITKN-L-DAVKFEFASTIDTLKNGIKKTPLLQTSPYSKIEGTPAQISLSEVTEEPDPESY 408 (552)
T ss_pred eecccCcccccccccCCCCccccC-c-ccEEEeccceeEecCCCeEEEEeEEeChhhhccCCCccccHHHhhcCCChhHc
Confidence 1111112 11245677744 2 1234666666655445558999999999998432100 0000 112
Q ss_pred CCCCceeeEEEEEe---------------------cCCcEEEEEeccccccCccccccc----CC-cccccccccHHHHH
Q 013932 222 LTGSAISLVSVVQA---------------------RNNARILITGSLSMFSNRSGVQKA----GS-SIKHEKSGNEQFLT 275 (433)
Q Consensus 222 ~~G~~~~Lv~alQ~---------------------~nnaRivv~GS~dffSn~~~~~~~----~~-~~~~~~~~N~~f~~ 275 (433)
..| ...|++++++ .+++||+|+||.||++|.+.+... |- .......+|.+|++
T Consensus 409 ~~g-~~~la~~l~g~~~s~f~~~~~~~~~~~~~~~~~~~rvvvvgd~d~l~d~~~~~~~~~~~g~~~~~~~~~~N~df~l 487 (552)
T TIGR03521 409 NLG-NLPLAVLLEGSFTSAYKNRILPFEIPFKRDQGKPTKMIVVADGDVIRNQLDNNGKPLELGYDRFTGNLYGNKEFLL 487 (552)
T ss_pred CCC-CeEEEEEEEeccccccCCCCCccccccccccCCCceEEEEechHHhhhhHhhcCCccccccchhccccCccHHHHH
Confidence 224 5667788764 257899999999999999543210 00 00112358999999
Q ss_pred HHhhcccCcCceEEEeee
Q 013932 276 EISKWVFHERGHLKAVNV 293 (433)
Q Consensus 276 ~l~~W~F~e~gvLr~~~~ 293 (433)
+++.|+.++++.|.+.+-
T Consensus 488 N~vd~L~~~~~li~IR~k 505 (552)
T TIGR03521 488 NAVNYLLDDTGLINIRSK 505 (552)
T ss_pred HHHHHhcCCchhhhcccc
Confidence 999999999999866543
No 4
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=98.93 E-value=3.9e-09 Score=103.73 Aligned_cols=107 Identities=14% Similarity=0.234 Sum_probs=86.6
Q ss_pred CCCCCCeEEEEEcCcccc----------cchhhHHHHhhcCCcEEEEecCCCCCccccccc-ccccCEEEEeCCCCCcCC
Q 013932 25 ENPTDRRVLVLVDDFAIK----------SSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYG-QYLYDALVLFCPSVERFG 93 (433)
Q Consensus 25 ~s~~~~r~LVl~d~~~~~----------~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~g-e~~yd~LII~~p~~~~~~ 93 (433)
++....+++.++.+++++ ..++.|.+.|+++ |+|...... ... +...|.|||+.|+.+ |.
T Consensus 141 v~~~~~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~-------~~~IP~~~d~Lvi~~P~~~-ls 211 (271)
T PF09822_consen 141 VTSDEKPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLA-------NEEIPDDADVLVIAGPKTD-LS 211 (271)
T ss_pred HhcccCceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCc-------ccccCCCCCEEEEECCCCC-CC
Confidence 444568889999998888 8999999999999 999875222 111 234499999999987 52
Q ss_pred CCCCHHHHHHHHHCCCcEEEEeCCCCc-------------HHHHHHHHHcCceecCCCCeEEEe
Q 013932 94 GSIDVASIVDFVDSGHDLIVAADSNAS-------------DLIREVATECGVDFDEDPAAMVID 144 (433)
Q Consensus 94 ~~ls~~~L~~Fid~GGNlLv~~~~~~~-------------~~lr~ll~elGI~~~p~~~~~VvD 144 (433)
.-+.+.|.+|+++|||+||++++... .++.+||+++||.+.++ +|+|
T Consensus 212 -~~e~~~l~~yl~~GG~ll~~~d~~~~~~~~~~~~~~~~~~~L~~lL~~~Gi~~~~~---~V~D 271 (271)
T PF09822_consen 212 -EEELYALDQYLMNGGKLLILLDPFSVELQGLWAGGAQRDSNLNDLLEEYGIRINPG---LVVD 271 (271)
T ss_pred -HHHHHHHHHHHHcCCeEEEEECCcccccccccccccccccCHHHHHHHcCCEeCCC---EecC
Confidence 24669999999999999999998743 49999999999999997 7876
No 5
>KOG3861 consensus Sensory cilia assembly protein [Extracellular structures]
Probab=98.71 E-value=1.1e-07 Score=93.62 Aligned_cols=171 Identities=19% Similarity=0.268 Sum_probs=113.6
Q ss_pred CEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeCCCC----cHHHHHHHHHcCceecCCCCeEEEeccC-ccccCCC
Q 013932 80 DALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNA----SDLIREVATECGVDFDEDPAAMVIDHIN-YAVSNFD 154 (433)
Q Consensus 80 d~LII~~p~~~~~~~~ls~~~L~~Fid~GGNlLv~~~~~~----~~~lr~ll~elGI~~~p~~~~~VvDhf~-~~~~~~~ 154 (433)
-.+|+..|+.+ |+ .-+-+.|..|++-||.++|+++.+- ..+++.+++++||.+..+ ++|-.++. |-. +
T Consensus 54 k~~i~agP~~~-Ft-~~Efevlkkyve~GGsl~vllGEGGE~rf~tnvNf~le~YGI~vN~D--tVvR~vy~KyFh--P- 126 (438)
T KOG3861|consen 54 KIFILAGPQDR-FT-EDEFEVLKKYVEVGGSLVVLLGEGGEPRFNTNVNFFLEQYGIYVNGD--TVVRPVYYKYFH--P- 126 (438)
T ss_pred eEEEecCcccc-cc-hhHHHHHHHHHhcCCeEEEEecCCCCccccccHHHHHHHhCeEecCC--ceeehhhhhccC--h-
Confidence 57888888876 84 3677999999999999998876432 379999999999999985 54544432 210 0
Q ss_pred CCceEEeeccccccc--------e--eccCC--cccCce-eeeceeEEecCCCceeEeeeEeCCcceecCCCCCCCCCCC
Q 013932 155 GDHTLIASDDFIKAD--------V--ILGSK--KIEAPV-LFQGIGHSLNPANSLVLKVLSASSSAYSANPKSKLSNPPS 221 (433)
Q Consensus 155 ~~~~~i~~~~~i~~~--------~--i~~~~--~~~~~v-l~~g~g~~l~~~n~l~~pIL~a~~tsys~~~~~~~~~~~~ 221 (433)
...+++...++.+ . ++... ..+..+ +-..-|++++ -+..+.-+|++.+++|..++ |
T Consensus 127 --KEalV~~GVvnr~i~raa~K~v~~~v~~~~~~n~qal~F~YPyGaTL~-V~~panvvLstGsv~fP~nR-------P- 195 (438)
T KOG3861|consen 127 --KEALVGGGVVNRSIWRAALKLVIEKVYYDFSDNKQALHFQYPYGATLN-VSEPANVVLSTGSVVFPFNR-------P- 195 (438)
T ss_pred --HHhhhccceeeHHHHHHHHhhhHHHHHhhcccchheEEEecccCceee-ccccceeEeccCceeccCCC-------c-
Confidence 0233333221110 0 01110 111233 2245566666 56778889999999987664 2
Q ss_pred CCCCceeeEEEEEec-CCcEEEEEeccccccCcccccccCCcccccccccHHHHHHHhhcccCcC
Q 013932 222 LTGSAISLVSVVQAR-NNARILITGSLSMFSNRSGVQKAGSSIKHEKSGNEQFLTEISKWVFHER 285 (433)
Q Consensus 222 ~~G~~~~Lv~alQ~~-nnaRivv~GS~dffSn~~~~~~~~~~~~~~~~~N~~f~~~l~~W~F~e~ 285 (433)
+++-+.+. +++||.++||+.||+|++. .+..|.+...-+++|+-...
T Consensus 196 -------~~af~~~kN~gGki~vvGS~~mfhD~Yl----------dkeeN~kifd~~v~~L~~g~ 243 (438)
T KOG3861|consen 196 -------LVAFFTNKNKGGKILVVGSGYMFHDKYL----------DKEENDKIFDYLVKLLGGGE 243 (438)
T ss_pred -------ceeeeeccCcCceEEEeeeeeeechhhc----------cccccchHHHHHHHHhcCCc
Confidence 23334443 4689999999999999973 47789899999999987654
No 6
>COG3225 GldG ABC-type uncharacterized transport system involved in gliding motility, auxiliary component [Cell motility and secretion]
Probab=96.43 E-value=0.037 Score=58.52 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=45.6
Q ss_pred cCCcEEEEEeccccccCcccccccCCcccccccccHHHHHHHhhcccCcCceEEEeeeEEEecC
Q 013932 236 RNNARILITGSLSMFSNRSGVQKAGSSIKHEKSGNEQFLTEISKWVFHERGHLKAVNVRHHKVG 299 (433)
Q Consensus 236 ~nnaRivv~GS~dffSn~~~~~~~~~~~~~~~~~N~~f~~~l~~W~F~e~gvLr~~~~~H~~~~ 299 (433)
+.|..+.+++|.+++||....+.. ..-.+|.+|+.+.++|..+.++.|-+.+--|.+..
T Consensus 431 ~~ns~~~lv~ds~~~s~~~~~q~~-----~v~~~N~~fv~N~~d~l~g~D~fln~~Sr~~~~~p 489 (538)
T COG3225 431 RENSPAILVADSDLLSAYMANQSQ-----QVVAGNFEFVTNIFDYLSGGDAFLNSKSRLEVRRP 489 (538)
T ss_pred ccCCceeecCcccccchhhhhcCC-----ceeeccHHHHHHHHHHHhCCcceEeeecccccccc
Confidence 346669999999999998432211 23478999999999999999999988877665544
No 7
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=95.39 E-value=0.05 Score=42.34 Aligned_cols=65 Identities=17% Similarity=0.351 Sum_probs=45.2
Q ss_pred cchhhHHHHhhcCCcEEEEe-cCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEe
Q 013932 43 SSHSLYFGSLTSRGFQLEFK-LADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAA 115 (433)
Q Consensus 43 ~~~S~F~~~L~~rGf~v~~~-~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GGNlLv~~ 115 (433)
..+.-|.+.|+++|.+++.. .|.+ .|. ..-..||+.+|... +...-+.+.|.+|+++||+|+|++
T Consensus 5 ~G~~a~~~~L~~~g~~v~~~~~~~~---~l~----~~~~tll~i~~~~~-~~~~~~~~~l~~~v~~G~~lvl~a 70 (70)
T PF14258_consen 5 NGTYALYQLLEEQGVKVERWRKPYE---ALE----ADDGTLLVIGPDLR-LSEPEEAEALLEWVEAGNTLVLAA 70 (70)
T ss_pred hHHHHHHHHHHHCCCeeEEecccHH---HhC----CCCCEEEEEeCCCC-CCchHHHHHHHHHHHcCCEEEEeC
Confidence 34567999999999999843 2211 121 14478888888755 321145589999999999999863
No 8
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein.
Probab=94.87 E-value=0.079 Score=57.91 Aligned_cols=95 Identities=13% Similarity=0.230 Sum_probs=59.5
Q ss_pred eEEEEEcCccc--ccchhhHHHHhhc--CCcEEEE-e-cCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHH
Q 013932 31 RVLVLVDDFAI--KSSHSLYFGSLTS--RGFQLEF-K-LADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDF 104 (433)
Q Consensus 31 r~LVl~d~~~~--~~~~S~F~~~L~~--rGf~v~~-~-~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~F 104 (433)
+.|+++|+.+. ..-.-+|.+.|+. .+|+.-. . ..++...+|. .|+.+||.-+..+.+ ..+.|.+|
T Consensus 55 ~l~~l~d~~~~~s~~~~~n~~kil~~~K~~~~~id~~~~~~~~~p~l~-----~Y~~vII~~~~l~~l----~~~~i~~y 125 (585)
T PF09960_consen 55 KLLILYDSNGELSMDIKENFKKILEYMKIPYDTIDIAEFIKSSIPSLS-----DYRGVIILTTDLDPL----GNEAIMNY 125 (585)
T ss_pred eEEEEECCCChHHHHHHHHHHHHHHHhccccEeeeccccccccCCccc-----ceeEEEEEecccccc----ChHHHHHH
Confidence 44559988654 2223345555543 3454221 1 1112212222 468899988887766 33999999
Q ss_pred HHCCCcEEEEeCCCCcHHHHHHHHHcCceecCC
Q 013932 105 VDSGHDLIVAADSNASDLIREVATECGVDFDED 137 (433)
Q Consensus 105 id~GGNlLv~~~~~~~~~lr~ll~elGI~~~p~ 137 (433)
+++|||++++..+...+.++.+ +||.-..+
T Consensus 126 V~~GG~vif~~~~~~~~~~~~I---lGI~~~~e 155 (585)
T PF09960_consen 126 VENGGTVIFATTPEKTPWLNFI---LGIRSVGE 155 (585)
T ss_pred HHcCCeEEEEeccccCcchhhe---eeeeeccc
Confidence 9999999999887766666666 78876664
No 9
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=93.53 E-value=0.25 Score=47.41 Aligned_cols=72 Identities=22% Similarity=0.227 Sum_probs=50.3
Q ss_pred cchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCC-CcCCCCCCHHHHHHHHHCCCcEEEEe
Q 013932 43 SSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV-ERFGGSIDVASIVDFVDSGHDLIVAA 115 (433)
Q Consensus 43 ~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~-~~~~~~ls~~~L~~Fid~GGNlLv~~ 115 (433)
.-|..|...|+++||+|+....+|+.-.|....=..||.||..+-.. +.+.. -..+.|.+||++||.++..=
T Consensus 23 ~~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~~~~l~~-eq~~~l~~~V~~GgGlv~lH 95 (215)
T cd03142 23 GMHGTIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIAHDEVKD-EIVERVHRRVLDGMGLIVLH 95 (215)
T ss_pred hHHHHHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCCcCcCCH-HHHHHHHHHHHcCCCEEEEC
Confidence 34667899999999999977666654223333344679999875554 43421 23388999999999999653
No 10
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=92.82 E-value=1.9 Score=35.39 Aligned_cols=73 Identities=19% Similarity=0.465 Sum_probs=53.2
Q ss_pred CcceEeCCceEEEEEEEEEeCCeeeeccCCCeEEEEEEeCce----Eeecc-ccCCCceEEEEEecCCc--eeeeEEEEe
Q 013932 304 PAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY----VLKTL-STDQKGHYSAEFKVPDV--YGVFQFKVE 376 (433)
Q Consensus 304 ~~~Y~i~d~v~y~i~i~e~~~~~W~P~~~~diQlEf~mldPy----~R~~l-~~~~~~~y~~~f~~PD~--hGvf~f~v~ 376 (433)
...||=+|.|.+.+-+-..++ +..|. .+..+++...||- .+... ..+..|.|+.+|+||+. .|.|+.++.
T Consensus 8 r~iYrPGetV~~~~~~~~~~~-~~~~~--~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~ 84 (99)
T PF01835_consen 8 RPIYRPGETVHFRAIVRDLDN-DFKPP--ANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVK 84 (99)
T ss_dssp SSEE-TTSEEEEEEEEEEECT-TCSCE--SSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEE
T ss_pred ccCcCCCCEEEEEEEEecccc-ccccc--cCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEE
Confidence 457999999999999998883 23333 4577778888993 33334 44678999999999998 699999999
Q ss_pred eee
Q 013932 377 YQR 379 (433)
Q Consensus 377 Y~R 379 (433)
+..
T Consensus 85 ~~~ 87 (99)
T PF01835_consen 85 TDD 87 (99)
T ss_dssp ETT
T ss_pred Ecc
Confidence 953
No 11
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=91.10 E-value=0.45 Score=45.00 Aligned_cols=60 Identities=25% Similarity=0.457 Sum_probs=33.8
Q ss_pred hhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCH---HHHHHHHHCCCcEEEEeCCC
Q 013932 45 HSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDV---ASIVDFVDSGHDLIVAADSN 118 (433)
Q Consensus 45 ~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~---~~L~~Fid~GGNlLv~~~~~ 118 (433)
-..+.+.|.++|..+++..+++ +|.. |..||+ |.... +++ +.|.+|+++||+|++..-++
T Consensus 32 ~~~~y~al~~~gi~vDvv~~~~---dL~~-----Ykllv~--P~~~~----l~~~~~~~L~~yV~~GG~li~~~~tg 94 (207)
T PF08532_consen 32 VRGWYRALRELGIPVDVVSPDD---DLSG-----YKLLVL--PSLYI----LSPEFAERLRAYVENGGTLILTPRTG 94 (207)
T ss_dssp HHHHHHHHHTTT--EEEE-TTS-----TT------SEEEE--S--SC------HHH---HHHHHT-SS-EEE-TTTT
T ss_pred HHHHHHHHHHcCCceEEecCcC---Cccc-----CcEEEE--eeEEE----EChHHHHHHHHHHHCCCEEEEEcccC
Confidence 3457889999999999997776 3554 576665 54442 345 56999999999998765443
No 12
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=89.93 E-value=2.8 Score=45.78 Aligned_cols=97 Identities=16% Similarity=0.299 Sum_probs=66.3
Q ss_pred cchhhHH---HHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC-CCcEEEEeC--
Q 013932 43 SSHSLYF---GSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS-GHDLIVAAD-- 116 (433)
Q Consensus 43 ~~~S~F~---~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~-GGNlLv~~~-- 116 (433)
..|..|+ +.|++.||-++.... .+.-++...|-.|++.++..+-|+ -+.++|.+=+.+ |=++.|.++
T Consensus 646 HiHTNFrdMY~hLR~~GYyievLg~-----PfTCFdAsqYGtLLmVD~E~~yfp--EEI~kLr~dV~n~GL~lVvF~dWY 718 (1033)
T KOG4266|consen 646 HIHTNFRDMYNHLRDAGYYIEVLGS-----PFTCFDASQYGTLLMVDLEDDYFP--EEIEKLRDDVINTGLGLVVFADWY 718 (1033)
T ss_pred cccccHHHHHHHHHhcceehhhhcC-----CceeccHhHCceEEEEccccccCH--HHHHHHHHHHHhcCceEEEEeccc
Confidence 3455555 568999999986411 122344455678999999877554 367888888877 668887775
Q ss_pred --------------------CCC----cHHHHHHHHHcCceecCCCCeEEEeccCcc
Q 013932 117 --------------------SNA----SDLIREVATECGVDFDEDPAAMVIDHINYA 149 (433)
Q Consensus 117 --------------------~~~----~~~lr~ll~elGI~~~p~~~~~VvDhf~~~ 149 (433)
|.. -++++.||+.+||-|.++ +.--||.-+
T Consensus 719 Nt~vM~K~kFfDeNTRqWWtPdTGGANIPALN~LL~~fgiaFgD~---i~eG~F~l~ 772 (1033)
T KOG4266|consen 719 NTDVMVKMKFFDENTRQWWTPDTGGANIPALNNLLASFGIAFGDK---ILEGDFSLD 772 (1033)
T ss_pred cceeeeeeeeeccCcceeccCCCCCcCcHhHHHHHhhhccccccc---eecceeeec
Confidence 111 268999999999999997 444466544
No 13
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=89.16 E-value=0.8 Score=40.84 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=41.9
Q ss_pred cchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEE
Q 013932 43 SSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIV 113 (433)
Q Consensus 43 ~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GGNlLv 113 (433)
+..-.+.+.|.+.|..+++..+++. |. .|+.||+-.. ..+ +.-..+.|.+|+++||.++.
T Consensus 26 ~~~~~~~~~l~~~gi~~d~v~~~~~---l~-----~y~~vi~P~~--~~~-~~~~~~~l~~~v~~GG~li~ 85 (154)
T cd03143 26 DLALALYRALRELGIPVDVVPPDAD---LS-----GYKLVVLPDL--YLL-SDATAAALRAYVENGGTLVA 85 (154)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCC---cc-----cCCEEEECch--hcC-CHHHHHHHHHHHHCCCEEEE
Confidence 4455688999999999998864432 32 5788888433 322 22346999999999995554
No 14
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=89.10 E-value=1.1 Score=42.46 Aligned_cols=204 Identities=17% Similarity=0.183 Sum_probs=96.9
Q ss_pred eEEEEEcC-cccc-----cchhhHHHHhh-cCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHH
Q 013932 31 RVLVLVDD-FAIK-----SSHSLYFGSLT-SRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVD 103 (433)
Q Consensus 31 r~LVl~d~-~~~~-----~~~S~F~~~L~-~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~ 103 (433)
|+||+..+ ...+ .....|.+.|+ +.||+++... |.+ .+....-..||.||++....+.+. .-..+.|.+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~--~~~-~~~~~~L~~~Dvvv~~~~~~~~l~-~~~~~al~~ 76 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTE--DPD-DLTPENLKGYDVVVFYNTGGDELT-DEQRAALRD 76 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECC--SGG-CTSHHCHCT-SEEEEE-SSCCGS--HHHHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEe--Ccc-cCChhHhcCCCEEEEECCCCCcCC-HHHHHHHHH
Confidence 68888866 2322 23334666777 6899998652 210 111212346699999988743331 123388999
Q ss_pred HHHCCCcEEEEe-CC-CCcHHHHHHHHHcCceecCCCCeEEEeccCccccCCCCCceEEeeccccccceeccCCcccCce
Q 013932 104 FVDSGHDLIVAA-DS-NASDLIREVATECGVDFDEDPAAMVIDHINYAVSNFDGDHTLIASDDFIKADVILGSKKIEAPV 181 (433)
Q Consensus 104 Fid~GGNlLv~~-~~-~~~~~lr~ll~elGI~~~p~~~~~VvDhf~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~~~~~v 181 (433)
|+++||.++.+= .. ........+.+=+|-.+.. |-... +.-+.. .-.++||+..-...-.+
T Consensus 77 ~v~~Ggglv~lH~~~~~~~~~~~~~~~l~Gg~f~~--------h~~~~--------~~~v~~-~~~~HPi~~gl~~~f~~ 139 (217)
T PF06283_consen 77 YVENGGGLVGLHGAATDSFPDWPEYNELLGGYFKG--------HPPPQ--------PFTVRV-EDPDHPITRGLPESFTI 139 (217)
T ss_dssp HHHTT-EEEEEGGGGGCCHTT-HHHHHHHS--SEE--------EECEE--------EEEEEE-SSTTSCCCTTS-SEEEE
T ss_pred HHHcCCCEEEEcccccccchhHHHHHHeeCccccC--------CCCCc--------eEEEEE-cCCCChhhcCCCCCceE
Confidence 999999999664 22 2333456677766744432 11111 111111 11356766331100001
Q ss_pred ---eeeceeEEecCCCceeEeeeEeCCcceecCCCCCCCCCCCCCCCceeeEEEEEecCCcEEEEEeccccccCcccccc
Q 013932 182 ---LFQGIGHSLNPANSLVLKVLSASSSAYSANPKSKLSNPPSLTGSAISLVSVVQARNNARILITGSLSMFSNRSGVQK 258 (433)
Q Consensus 182 ---l~~g~g~~l~~~n~l~~pIL~a~~tsys~~~~~~~~~~~~~~G~~~~Lv~alQ~~nnaRivv~GS~dffSn~~~~~~ 258 (433)
+|...- . ..+.+.+|+++..++|.... ..| ....++=......+|+..+.=+.--++
T Consensus 140 ~DE~Y~~~~---~-~~~~~~vL~~~~~~~~~~~~---------~~~-~~~Pv~W~~~~GkGRvf~~~lGH~~~~------ 199 (217)
T PF06283_consen 140 YDEWYYFLR---D-PRPNVTVLLTADESSYDPEG---------GEG-GDHPVAWTREYGKGRVFYTTLGHDEET------ 199 (217)
T ss_dssp EEEEEES-B---S----CEEEEEEEE--GGG--T---------TTS-SEEEEEEEEECTTEEEEEE----TTSH------
T ss_pred ccccccccc---C-CCCCEEEEEEEEeccccccc---------cCC-CeEEEEEEEEeCCeeEEEECCCCChhh------
Confidence 111110 1 12248888888866554310 011 112334334467799998876552221
Q ss_pred cCCcccccccccHHHHHHHhhcc
Q 013932 259 AGSSIKHEKSGNEQFLTEISKWV 281 (433)
Q Consensus 259 ~~~~~~~~~~~N~~f~~~l~~W~ 281 (433)
.....=++++.+-+.|+
T Consensus 200 ------~~~~~~~~ll~ngi~Wa 216 (217)
T PF06283_consen 200 ------WEDPDFRRLLRNGIRWA 216 (217)
T ss_dssp ------HHBHHHHHHHHHHHHHC
T ss_pred ------cCCHHHHHHHHHHHHhh
Confidence 12344567888999996
No 15
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=88.92 E-value=0.85 Score=42.99 Aligned_cols=70 Identities=21% Similarity=0.275 Sum_probs=48.6
Q ss_pred hHHHHhhcCCcEEEEecCCCCCc--ccccccccccCEEEEeCCCCCcC--------CCCCCH---HHHHHHHHCCCcEEE
Q 013932 47 LYFGSLTSRGFQLEFKLADDPNI--GLQRYGQYLYDALVLFCPSVERF--------GGSIDV---ASIVDFVDSGHDLIV 113 (433)
Q Consensus 47 ~F~~~L~~rGf~v~~~~~~d~~~--~L~~~ge~~yd~LII~~p~~~~~--------~~~ls~---~~L~~Fid~GGNlLv 113 (433)
-+++.|++-+|+|++-.+-+... .....+-..||.+||-+.-+..| ...+.+ +.|++|+++||-+|.
T Consensus 36 ~Ll~~Lr~g~~dv~yMpAH~~q~~FPqtme~L~~YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~likdyV~~GGGLLM 115 (254)
T COG5426 36 PLLKALRGGEYDVTYMPAHDAQEKFPQTMEGLDAYDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKLIKDYVENGGGLLM 115 (254)
T ss_pred HHHHHHhCCCcceEEechHHHHHhcchhhhhhcccceEEEeecCCceeeccccceeecccCccHHHHHHHHHhcCCcEEE
Confidence 37889999999999965544432 23355667789998866544322 122333 789999999999998
Q ss_pred EeC
Q 013932 114 AAD 116 (433)
Q Consensus 114 ~~~ 116 (433)
.++
T Consensus 116 iGG 118 (254)
T COG5426 116 IGG 118 (254)
T ss_pred Ecc
Confidence 776
No 16
>PRK05568 flavodoxin; Provisional
Probab=88.63 E-value=5.4 Score=34.79 Aligned_cols=102 Identities=10% Similarity=0.142 Sum_probs=62.7
Q ss_pred CeEEEEEcCcc--cccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCC---CHHHHHHH
Q 013932 30 RRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSI---DVASIVDF 104 (433)
Q Consensus 30 ~r~LVl~d~~~--~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l---s~~~L~~F 104 (433)
++++|+|.+.. .+.--..+.+.+++.|.+++.....+.+. .....||.||+.+|.-. .+-. ..+.+.+.
T Consensus 2 ~~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~----~~~~~~d~iilgsp~y~--~~~~~~~~~~~f~~~ 75 (142)
T PRK05568 2 KKINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASV----DDVKGADVVALGSPAMG--DEVLEEGEMEPFVES 75 (142)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCH----HHHHhCCEEEEECCccC--cccccchhHHHHHHH
Confidence 36899997742 23333457788888999988765555432 13456799999999753 1211 22333333
Q ss_pred HH---CCCcEEEEeCCC-----CcHHHHHHHHHcCceecCC
Q 013932 105 VD---SGHDLIVAADSN-----ASDLIREVATECGVDFDED 137 (433)
Q Consensus 105 id---~GGNlLv~~~~~-----~~~~lr~ll~elGI~~~p~ 137 (433)
+. +|..+.+.+..+ ..+.+.+.++++|+.....
T Consensus 76 ~~~~~~~k~~~~f~t~G~~~~~~~~~~~~~l~~~g~~~~~~ 116 (142)
T PRK05568 76 ISSLVKGKKLVLFGSYGWGDGEWMRDWVERMEGYGANLVNE 116 (142)
T ss_pred hhhhhCCCEEEEEEccCCCCChHHHHHHHHHHHCCCEEeCC
Confidence 32 456677665432 2355667888899888775
No 17
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=86.19 E-value=2.5 Score=34.59 Aligned_cols=68 Identities=19% Similarity=0.359 Sum_probs=48.0
Q ss_pred EeCCceEEEEEEEEEeCCeeeeccCCCeEEEEEEeCc-------eEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013932 308 RINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSP-------YVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 379 (433)
Q Consensus 308 ~i~d~v~y~i~i~e~~~~~W~P~~~~diQlEf~mldP-------y~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 379 (433)
+++...+|.|+... .+|..+.-..+++|+++ .+| -+...+...++|+|.++|+ |.+.|-|+..|.|..
T Consensus 18 ~~g~~~~F~V~~~d-~~g~~~~~~~~~~~v~i--~~p~~~~~~~~~~~~v~~~~~G~y~v~y~-p~~~G~y~i~V~~~g 92 (101)
T PF00630_consen 18 VVGEPATFTVDTRD-AGGNPVSSGGDEFQVTI--TSPDGKEEPVPVPVEVIDNGDGTYTVSYT-PTEPGKYKISVKING 92 (101)
T ss_dssp ETTSEEEEEEEETT-TTSSBEESTSSEEEEEE--ESSSSESS--EEEEEEEEESSSEEEEEEE-ESSSEEEEEEEEESS
T ss_pred ECCCcEEEEEEEcc-CCCCccccCCceeEEEE--eCCCCCccccccceEEEECCCCEEEEEEE-eCccEeEEEEEEECC
Confidence 77778888887763 22344444446777665 555 3445555668999999999 677899999999865
No 18
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=81.71 E-value=1.1 Score=41.77 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=44.8
Q ss_pred hHHHHhhcCCcEEEEecCCCC-----CcccccccccccCEEEEeCCCCCcC-C---CCCCHHHHHHHHHCCCcEEEEeCC
Q 013932 47 LYFGSLTSRGFQLEFKLADDP-----NIGLQRYGQYLYDALVLFCPSVERF-G---GSIDVASIVDFVDSGHDLIVAADS 117 (433)
Q Consensus 47 ~F~~~L~~rGf~v~~~~~~d~-----~~~L~~~ge~~yd~LII~~p~~~~~-~---~~ls~~~L~~Fid~GGNlLv~~~~ 117 (433)
.+...|...+++++....+++ .-.|+..+-..||.+||-.-....+ . +.-..+.|.+|+++||-+++++++
T Consensus 31 ~l~~~l~~~~~~~~~~p~~~~~~~fP~~~lf~~~L~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~GGgLlmigG~ 110 (177)
T PF07090_consen 31 LLHFALLRPGIEVDYIPAHEALIAFPTTLLFDEELNRYDVVILSDVPANSLLKSRRSPNQLELLADYVRDGGGLLMIGGP 110 (177)
T ss_dssp HHHHHHHHTT-EEEEEEHHHHHHH--SSC--SHHHCT-SEEEEES--HHHHHT----HHHHHHHHHHHHTT-EEEEE-ST
T ss_pred HHHHHHhcCCccccccccchhhhhCCCchhhhhHHhcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHhCCEEEEEeCh
Confidence 467788888999987543321 1124556678889999988766655 0 112338899999999999988876
Q ss_pred CC
Q 013932 118 NA 119 (433)
Q Consensus 118 ~~ 119 (433)
..
T Consensus 111 ~s 112 (177)
T PF07090_consen 111 RS 112 (177)
T ss_dssp TS
T ss_pred hh
Confidence 54
No 19
>PRK05569 flavodoxin; Provisional
Probab=80.79 E-value=16 Score=31.71 Aligned_cols=101 Identities=14% Similarity=0.202 Sum_probs=60.7
Q ss_pred CeEEEEEcCcc--cccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCC---CHHHHHHH
Q 013932 30 RRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSI---DVASIVDF 104 (433)
Q Consensus 30 ~r~LVl~d~~~--~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l---s~~~L~~F 104 (433)
.+++++|.+.. .+.-=..+.+.|++.|.+++.....+.+. .....||.||+.+|.-.. +.. ..+.+.+.
T Consensus 2 ~ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~----~~~~~~d~iilgsPty~~--~~~~~~~~~~~~~~ 75 (141)
T PRK05569 2 KKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKV----EDVLEADAVAFGSPSMDN--NNIEQEEMAPFLDQ 75 (141)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCH----HHHhhCCEEEEECCCcCC--CcCChHHHHHHHHH
Confidence 37899997752 22233456777888899988765554332 234467999999997531 112 23444444
Q ss_pred HH----CCCcEEEEeCCCC-----cHHHHHHHHHcCceecC
Q 013932 105 VD----SGHDLIVAADSNA-----SDLIREVATECGVDFDE 136 (433)
Q Consensus 105 id----~GGNlLv~~~~~~-----~~~lr~ll~elGI~~~p 136 (433)
+. +|..+.+.+..+- .+.++.++++.|+.+..
T Consensus 76 l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~ 116 (141)
T PRK05569 76 FKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIG 116 (141)
T ss_pred hhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEee
Confidence 43 3455665554321 24567778888887755
No 20
>PF13115 YtkA: YtkA-like
Probab=79.87 E-value=9.5 Score=30.43 Aligned_cols=62 Identities=21% Similarity=0.353 Sum_probs=43.5
Q ss_pred EeCCceEEEEEEEEEeCCeeeeccCCCeEEEEEEeC----c--eEeeccccCCCceEEEEEecCCceeeeEEEE
Q 013932 308 RINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMS----P--YVLKTLSTDQKGHYSAEFKVPDVYGVFQFKV 375 (433)
Q Consensus 308 ~i~d~v~y~i~i~e~~~~~W~P~~~~diQlEf~mld----P--y~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v 375 (433)
+.++. + |.+. ......|....+|++|+.|-+ + ..-..+...+.|.|.++.+++. =|.|+.+|
T Consensus 18 ~~g~~-~--i~v~--~~~~g~pv~~a~V~~~~~m~~~~g~~~~~~~~~~~~~~~G~Y~~~~~f~m-~G~W~i~v 85 (86)
T PF13115_consen 18 KVGEN-T--ITVT--VDQGGKPVTDADVQFEIWMPDMEGMEPMTSKVELEETGPGVYEAEVTFSM-AGTWQITV 85 (86)
T ss_pred cCCce-E--EEEE--ECCCCCCCCCCEEEEEEEeCCCCCCCCCceeeeeecCCCCeEEEEeecCC-CeeEEEEE
Confidence 55555 3 4444 455667988777999999996 3 3444455567899999977765 78887766
No 21
>PF10634 Iron_transport: Fe2+ transport protein; InterPro: IPR018470 This is a bacterial family of periplasmic proteins that are thought to function in high-affinity Fe2+ transport.; PDB: 3LZP_B 3LZN_B 3LZR_A 3LZQ_B 3LZO_A 3LZL_B 3PJN_A 3PJL_A 2O6D_A 2O6C_B ....
Probab=79.13 E-value=6.3 Score=35.76 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=33.8
Q ss_pred eCCceEEEEEEEEEeC-------CeeeeccCCCeEEEEEEeCc--eEeec---cccCCCceEEEEEecCCceeeeEEEEe
Q 013932 309 INDDLEYSVEIYEWSG-------TSWEPYVSDDVQVQFYMMSP--YVLKT---LSTDQKGHYSAEFKVPDVYGVFQFKVE 376 (433)
Q Consensus 309 i~d~v~y~i~i~e~~~-------~~W~P~~~~diQlEf~mldP--y~R~~---l~~~~~~~y~~~f~~PD~hGvf~f~v~ 376 (433)
=+.+|+-+.+|+-..+ |.|+||- .|..|++..|= -..-+ |...+.-+|-.+.|+ +-=|-|+-++.
T Consensus 39 ~~sdiHLEADIhA~~~n~~Gf~~G~wvPyL--~v~y~i~~~~~~~~~~G~~mPM~A~DGpHYG~Nvkl-~g~G~Y~v~~~ 115 (151)
T PF10634_consen 39 SESDIHLEADIHATEGNPNGFGEGDWVPYL--TVSYEITKKGSGKVQEGTFMPMVASDGPHYGDNVKL-DGPGKYKVTFT 115 (151)
T ss_dssp GG-SEEEEEEEEE-TTGCCS--TTSB--S---EEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEE-S-TSSEEEEEEEE
T ss_pred hhCCeEEEEecccccCCCCcccCCcccCCc--EEEEEEEeCCCCeEEEEecceeecCcCccccccccC-CCCccEEEEEE
Confidence 4678999999998853 6999995 24444444431 11111 112233356666666 44555555554
Q ss_pred eeecc
Q 013932 377 YQRLG 381 (433)
Q Consensus 377 Y~R~G 381 (433)
..-|+
T Consensus 116 I~pP~ 120 (151)
T PF10634_consen 116 IGPPS 120 (151)
T ss_dssp EE-GG
T ss_pred EcCcc
Confidence 44443
No 22
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=79.03 E-value=22 Score=30.39 Aligned_cols=102 Identities=16% Similarity=0.239 Sum_probs=58.9
Q ss_pred EEEEEcCcc--cccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCc-CCCCCCHHHHHHHHH--
Q 013932 32 VLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVER-FGGSIDVASIVDFVD-- 106 (433)
Q Consensus 32 ~LVl~d~~~--~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~-~~~~ls~~~L~~Fid-- 106 (433)
++|+|.+.. .+.-=..+.+.|++.|++++.....+.+.. ....||.||+.+|.... ..++-..+.+.+++.
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~~----~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~ 76 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADADAE----DLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDI 76 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccCCHH----HHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhC
Confidence 467776642 122223466778888999987655544321 12347999999998541 110123455555555
Q ss_pred --CCCcEEEEeCCC-------CcHHHHHHHHHcCceecCC
Q 013932 107 --SGHDLIVAADSN-------ASDLIREVATECGVDFDED 137 (433)
Q Consensus 107 --~GGNlLv~~~~~-------~~~~lr~ll~elGI~~~p~ 137 (433)
+|-++.+.+..+ ..+.++..++++|...-..
T Consensus 77 ~~~gk~~~vfgt~g~~~~f~~~~~~~~~~l~~~g~~~v~~ 116 (140)
T TIGR01753 77 DLGGKKVALFGSGDWGYEFCEAVDDWEERLKEAGATIIAE 116 (140)
T ss_pred CCCCCEEEEEecCCCCchhhHHHHHHHHHHHHCCCEEecC
Confidence 344555554322 1345778888889887553
No 23
>PRK06756 flavodoxin; Provisional
Probab=76.25 E-value=26 Score=30.83 Aligned_cols=102 Identities=17% Similarity=0.192 Sum_probs=58.9
Q ss_pred CeEEEEEcCcc-cccch-hhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH-
Q 013932 30 RRVLVLVDDFA-IKSSH-SLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD- 106 (433)
Q Consensus 30 ~r~LVl~d~~~-~~~~~-S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid- 106 (433)
.|++|+|.+.. ..+.. ....+.|+++|.+++.....+... ......||.+|+.+|... . +.+ +..+.+|++
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~---~~~~~~~d~vi~gspt~~-~-g~~-p~~~~~fl~~ 75 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPE---ASILEQYDGIILGAYTWG-D-GDL-PDDFLDFYDA 75 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCC---HHHHhcCCeEEEEeCCCC-C-CCC-cHHHHHHHHH
Confidence 37899997742 12222 245677888999988654433210 122346799999998753 1 112 233555543
Q ss_pred ------CCCcEEEEeCCC--------CcHHHHHHHHHcCceecCC
Q 013932 107 ------SGHDLIVAADSN--------ASDLIREVATECGVDFDED 137 (433)
Q Consensus 107 ------~GGNlLv~~~~~--------~~~~lr~ll~elGI~~~p~ 137 (433)
+|-.+.+.+..+ ..+.+...+.++|+..-..
T Consensus 76 l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~ 120 (148)
T PRK06756 76 MDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLE 120 (148)
T ss_pred HhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCC
Confidence 244455554422 1356677888889888664
No 24
>PRK06703 flavodoxin; Provisional
Probab=76.05 E-value=31 Score=30.46 Aligned_cols=101 Identities=14% Similarity=0.220 Sum_probs=60.4
Q ss_pred eEEEEEcCcc-c-ccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCC--CHHHHHHHHH
Q 013932 31 RVLVLVDDFA-I-KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSI--DVASIVDFVD 106 (433)
Q Consensus 31 r~LVl~d~~~-~-~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l--s~~~L~~Fid 106 (433)
|++|+|.... . +.-=..+.+.|+..|++++....++... .....||.|||.+|... . +.. +.+.+.+.++
T Consensus 3 kv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~----~~l~~~d~viigspt~~-~-g~~p~~~~~f~~~l~ 76 (151)
T PRK06703 3 KILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDA----EELLAYDGIILGSYTWG-D-GDLPYEAEDFHEDLE 76 (151)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCH----HHHhcCCcEEEEECCCC-C-CcCcHHHHHHHHHHh
Confidence 7889997642 1 2222246677888999988654444321 12456799999998763 2 112 3455566565
Q ss_pred C----CCcEEEEeCCCC--------cHHHHHHHHHcCceecCC
Q 013932 107 S----GHDLIVAADSNA--------SDLIREVATECGVDFDED 137 (433)
Q Consensus 107 ~----GGNlLv~~~~~~--------~~~lr~ll~elGI~~~p~ 137 (433)
+ |-.+.+.+..+. .+.+...++++|..+...
T Consensus 77 ~~~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~ 119 (151)
T PRK06703 77 NIDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQE 119 (151)
T ss_pred cCCCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEccc
Confidence 2 334445443221 233888899999988764
No 25
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=75.27 E-value=26 Score=30.03 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=53.3
Q ss_pred hHHHHhhcCCcEEEEecCCCCCc-------ccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeCCCC
Q 013932 47 LYFGSLTSRGFQLEFKLADDPNI-------GLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNA 119 (433)
Q Consensus 47 ~F~~~L~~rGf~v~~~~~~d~~~-------~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GGNlLv~~~~~~ 119 (433)
..++.|+++||++-...|+..++ +|.+ .+..-|.++|+-|... .++.+.+-.+.|=+-+|+-+...
T Consensus 18 ~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e-~p~~iDlavv~~~~~~------~~~~v~~~~~~g~~~v~~~~g~~ 90 (116)
T PF13380_consen 18 RVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAE-IPEPIDLAVVCVPPDK------VPEIVDEAAALGVKAVWLQPGAE 90 (116)
T ss_dssp HHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGG-CSST-SEEEE-S-HHH------HHHHHHHHHHHT-SEEEE-TTS-
T ss_pred HHHHHHHhCCCEEEEECCCceEECcEEeeccccC-CCCCCCEEEEEcCHHH------HHHHHHHHHHcCCCEEEEEcchH
Confidence 36778888999999877776542 2222 2344499999888655 56777777778866666666677
Q ss_pred cHHHHHHHHHcCceec
Q 013932 120 SDLIREVATECGVDFD 135 (433)
Q Consensus 120 ~~~lr~ll~elGI~~~ 135 (433)
.+.+..++++.|+.+.
T Consensus 91 ~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 91 SEELIEAAREAGIRVI 106 (116)
T ss_dssp -HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHcCCEEE
Confidence 8899999999999988
No 26
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=74.29 E-value=25 Score=32.88 Aligned_cols=103 Identities=16% Similarity=0.120 Sum_probs=60.0
Q ss_pred eEEEEEcCc--ccccchhhHHHHhhcC-CcEEEEecCCCCCc---------------cc-ccccccccCEEEEeCCCCCc
Q 013932 31 RVLVLVDDF--AIKSSHSLYFGSLTSR-GFQLEFKLADDPNI---------------GL-QRYGQYLYDALVLFCPSVER 91 (433)
Q Consensus 31 r~LVl~d~~--~~~~~~S~F~~~L~~r-Gf~v~~~~~~d~~~---------------~L-~~~ge~~yd~LII~~p~~~~ 91 (433)
|+||++.+. +.+..-..+.+.+++. |.+++.....+... .+ .......||.||+.+|..-
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty~- 80 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTRF- 80 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEecccc-
Confidence 689999775 1223334577778775 99988643322110 00 0122356799999999753
Q ss_pred CCCCCCHHHHHHHHHCC----------CcEE-EEeCCCC----c----HHHHHHHHHcCceecCC
Q 013932 92 FGGSIDVASIVDFVDSG----------HDLI-VAADSNA----S----DLIREVATECGVDFDED 137 (433)
Q Consensus 92 ~~~~ls~~~L~~Fid~G----------GNlL-v~~~~~~----~----~~lr~ll~elGI~~~p~ 137 (433)
+.+.. .++.|+|.= |... +.++.+. . ..++.++.++|+.+-+.
T Consensus 81 --g~~~~-~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~~ 142 (197)
T TIGR01755 81 --GNMAS-QMRNFLDQTGGLWASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVPL 142 (197)
T ss_pred --cCccH-HHHHHHHhccccccccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeCC
Confidence 32343 467777753 3333 4443221 1 45666778999998885
No 27
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=73.74 E-value=15 Score=35.32 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=28.4
Q ss_pred CeEEEEEc-----CcccccchhhHHHHhhcCCcEEEEecCCC
Q 013932 30 RRVLVLVD-----DFAIKSSHSLYFGSLTSRGFQLEFKLADD 66 (433)
Q Consensus 30 ~r~LVl~d-----~~~~~~~~S~F~~~L~~rGf~v~~~~~~d 66 (433)
+|+||++. +-.+.......+..|++.|+++++..|+.
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 58999996 33345566678899999999999977653
No 28
>COG2998 TupB ABC-type tungstate transport system, permease component [Coenzyme metabolism]
Probab=71.11 E-value=23 Score=34.55 Aligned_cols=59 Identities=22% Similarity=0.327 Sum_probs=39.4
Q ss_pred EEEecCCcEEEEEeccccccCcccccccCCcccccccccHHHHHHHhhcccCcCceEEEeee
Q 013932 232 VVQARNNARILITGSLSMFSNRSGVQKAGSSIKHEKSGNEQFLTEISKWVFHERGHLKAVNV 293 (433)
Q Consensus 232 alQ~~nnaRivv~GS~dffSn~~~~~~~~~~~~~~~~~N~~f~~~l~~W~F~e~gvLr~~~~ 293 (433)
+..+|-+=-|++-|+.+||.= +.+...++ +..++-|..=+..++.|...++|.=-+.++
T Consensus 203 aYr~r~~L~iv~~gd~~L~N~-Ysvi~vNP--~r~~~vny~~A~kfi~w~~s~~gq~~Ia~f 261 (280)
T COG2998 203 AYRNRPTLVIVLEGDPSLFNP-YSVIAVNP--KRVKGVNYTAATKFIEWLMSEKGQNLIAEF 261 (280)
T ss_pred EecCccceEEEecCCccccCc-eeEEEEch--hcCCCcCchHHHHHHHHHhhHHHHHHHhhc
Confidence 333455667888898888853 33322222 235678888899999999999987555544
No 29
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=70.94 E-value=7.3 Score=33.53 Aligned_cols=20 Identities=30% Similarity=0.713 Sum_probs=17.0
Q ss_pred cccCCCceEEEEEe-cCCcee
Q 013932 350 LSTDQKGHYSAEFK-VPDVYG 369 (433)
Q Consensus 350 l~~~~~~~y~~~f~-~PD~hG 369 (433)
++..+.|+|.-.|+ .||++|
T Consensus 87 v~~sD~G~Y~C~v~n~p~~~~ 107 (116)
T cd05879 87 LDYTDNGTFTCDVKNPPDIVG 107 (116)
T ss_pred CCcccCEEEEEEEEcCCCcCC
Confidence 56678999999999 889776
No 30
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=70.23 E-value=25 Score=28.64 Aligned_cols=63 Identities=14% Similarity=0.293 Sum_probs=42.9
Q ss_pred EeCCceEEEEEEEEEeCCeeeeccCCCeEEEEEEeC-ceEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013932 308 RINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMS-PYVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 379 (433)
Q Consensus 308 ~i~d~v~y~i~i~e~~~~~W~P~~~~diQlEf~mld-Py~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 379 (433)
+++...+|.|+-..- -.++++++...=| --+...++..++|+|.++|+ |.+-|.|+..|.|..
T Consensus 15 ~vg~~~~f~v~~~d~--------G~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~-P~~~G~~~i~V~~~g 78 (93)
T smart00557 15 VVGEPAEFTIDTRGA--------GGGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYT-PTEPGDYTVTVKFGG 78 (93)
T ss_pred ecCCCEEEEEEcCCC--------CCCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEE-eCCCEeEEEEEEECC
Confidence 666677777665542 1355555554333 12555566677899999999 888899999998874
No 31
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=68.08 E-value=49 Score=28.69 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=59.2
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCc------------ccccccccccCEEEEeCCCCCc--CCC
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNI------------GLQRYGQYLYDALVLFCPSVER--FGG 94 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~------------~L~~~ge~~yd~LII~~p~~~~--~~~ 94 (433)
+.|+.+|+-+......++...+-|+..|+++.+..++...+ .+.......||.|||....... +..
T Consensus 1 ~~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~ 80 (142)
T cd03132 1 GRKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAP 80 (142)
T ss_pred CCEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHcc
Confidence 45777777555566778889999999999999876554321 1222222258998886532210 111
Q ss_pred CC-CHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecCCCCe
Q 013932 95 SI-DVASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFDEDPAA 140 (433)
Q Consensus 95 ~l-s~~~L~~Fid~GGNlLv~~~~~~~~~lr~ll~elGI~~~p~~~~ 140 (433)
+- -.+-|.++.++|. .+.+...+. .++.+.|+-..+. |.
T Consensus 81 ~~~l~~~l~~~~~~~~-~I~aic~G~-----~~La~aGll~~~~-gv 120 (142)
T cd03132 81 SGRALHFVTEAFKHGK-PIGAVGEGS-----DLLEAAGIPLEDP-GV 120 (142)
T ss_pred ChHHHHHHHHHHhcCC-eEEEcCchH-----HHHHHcCCCCCCC-cE
Confidence 00 1144556665555 443333322 4677788865543 54
No 32
>PRK09271 flavodoxin; Provisional
Probab=65.90 E-value=25 Score=31.69 Aligned_cols=84 Identities=11% Similarity=0.109 Sum_probs=47.5
Q ss_pred eEEEEEcCcc--cccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCC--CHHHHHHHHH
Q 013932 31 RVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSI--DVASIVDFVD 106 (433)
Q Consensus 31 r~LVl~d~~~--~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l--s~~~L~~Fid 106 (433)
|++|++.... .+.-=....+.|+.+|++++....++..++=.......||.+||.+|... - +.. +.+.+.+.+.
T Consensus 2 kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~-~-G~~p~~~~~f~~~l~ 79 (160)
T PRK09271 2 RILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDN-A-GRTPPEMKRFIAELA 79 (160)
T ss_pred eEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccC-C-CcCCHHHHHHHHHHH
Confidence 6889997642 22333346788999999987543333322111223345799999999763 1 212 2455665564
Q ss_pred C----CCcEEEEeC
Q 013932 107 S----GHDLIVAAD 116 (433)
Q Consensus 107 ~----GGNlLv~~~ 116 (433)
. |-.+.+.+.
T Consensus 80 ~~~~~~k~~avfgs 93 (160)
T PRK09271 80 ETIGKPPNVAVFGT 93 (160)
T ss_pred HHhccCCeEEEEec
Confidence 3 333555554
No 33
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=64.45 E-value=34 Score=29.95 Aligned_cols=110 Identities=13% Similarity=0.164 Sum_probs=66.8
Q ss_pred eEEEEEcCccc----ccchhhHHHHhhcCCcEEEEecCCCCCcccc-----------------cccccccCEEEEeCCCC
Q 013932 31 RVLVLVDDFAI----KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQ-----------------RYGQYLYDALVLFCPSV 89 (433)
Q Consensus 31 r~LVl~d~~~~----~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~-----------------~~ge~~yd~LII~~p~~ 89 (433)
|+|++.-+... ...-..+.+.|+++|++++...+.|-.+... .......|.+|+.+|..
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y 81 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVY 81 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEB
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEE
Confidence 56777755421 2333357888888899999876665322221 12234569999999966
Q ss_pred CcCCCCCCH--HHHHHHHH-------CCCcEEEE-eCCC------CcHHHHHHHHHcCceecCCCCeEEEe
Q 013932 90 ERFGGSIDV--ASIVDFVD-------SGHDLIVA-ADSN------ASDLIREVATECGVDFDEDPAAMVID 144 (433)
Q Consensus 90 ~~~~~~ls~--~~L~~Fid-------~GGNlLv~-~~~~------~~~~lr~ll~elGI~~~p~~~~~VvD 144 (433)
. +.++. +.+.|.+. +|.-+.++ .+.+ ....++.++..+|....|. +...++
T Consensus 82 ~---~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~g~~~g~~~~~~~l~~~~~~~~~~~~~~-~~~~~~ 148 (152)
T PF03358_consen 82 N---GSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVGGGRRGGLRALEQLRQILDYLGMIVVPS-GVFAVS 148 (152)
T ss_dssp T---TBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEESSSSTTHHHHHHHHHHHHHTTBEEECC-SEEEET
T ss_pred c---CcCChhhhHHHHHhccccccccCCCEEEEEEEecCCcHHHHHHHHHHHHHHHCCCEEcCC-cEEEEe
Confidence 5 33444 66777664 23323332 2222 1478899999999999996 555544
No 34
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=63.50 E-value=51 Score=36.35 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=39.8
Q ss_pred CcCCCCCCHHHHHHHHHCCCcEEEEeCCCCcH-HHHHHHHHcCceecCCCCeEEEeccCcc
Q 013932 90 ERFGGSIDVASIVDFVDSGHDLIVAADSNASD-LIREVATECGVDFDEDPAAMVIDHINYA 149 (433)
Q Consensus 90 ~~~~~~ls~~~L~~Fid~GGNlLv~~~~~~~~-~lr~ll~elGI~~~p~~~~~VvDhf~~~ 149 (433)
+.+| ++...+.+..+.|.+++|+.|.+++. ..-+.++++||++ +|.||+...
T Consensus 111 eGYG--l~~~~i~~~~~~~~~LiItvD~Gi~~~e~i~~a~~~gidv------IVtDHH~~~ 163 (575)
T PRK11070 111 DGYG--LSPEVVDQAHARGAQLIVTVDNGISSHAGVAHAHALGIPV------LVTDHHLPG 163 (575)
T ss_pred CCCC--CCHHHHHHHHhcCCCEEEEEcCCcCCHHHHHHHHHCCCCE------EEECCCCCC
Confidence 5554 89999999999999999999988752 2336789999854 677877543
No 35
>PRK07308 flavodoxin; Validated
Probab=61.49 E-value=61 Score=28.38 Aligned_cols=101 Identities=7% Similarity=0.036 Sum_probs=57.8
Q ss_pred eEEEEEcCcc--cccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCC--HHHHHHHHH
Q 013932 31 RVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSID--VASIVDFVD 106 (433)
Q Consensus 31 r~LVl~d~~~--~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls--~~~L~~Fid 106 (433)
++.|+|.... .+.-=....+.|+++|++++....++.+.. ....||.+|+.+|... . +.+. ...+.+.+.
T Consensus 3 ~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~~----~l~~~d~vi~g~~t~g-~-G~~p~~~~~fl~~l~ 76 (146)
T PRK07308 3 LAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVDAS----DFEDADIAIVATYTYG-D-GELPDEIVDFYEDLA 76 (146)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccCCHh----HhccCCEEEEEeCccC-C-CCCCHHHHHHHHHHh
Confidence 5788887642 222233466788889998876544443221 2245699999888763 1 2222 344444443
Q ss_pred C---CC-cEEEEeCCC--------CcHHHHHHHHHcCceecCC
Q 013932 107 S---GH-DLIVAADSN--------ASDLIREVATECGVDFDED 137 (433)
Q Consensus 107 ~---GG-NlLv~~~~~--------~~~~lr~ll~elGI~~~p~ 137 (433)
. .| .+.+.+..+ ..+.+...+.++|...-..
T Consensus 77 ~~~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~ 119 (146)
T PRK07308 77 DLDLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAE 119 (146)
T ss_pred cCCCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccC
Confidence 2 23 333444311 1356778888999888653
No 36
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=59.47 E-value=37 Score=26.22 Aligned_cols=56 Identities=16% Similarity=0.039 Sum_probs=36.0
Q ss_pred EEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCC
Q 013932 33 LVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV 89 (433)
Q Consensus 33 LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~ 89 (433)
.+++.+......+....+.|+..|++++........... ......||.|||-....
T Consensus 2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~d~lii~g~~~ 57 (115)
T cd01653 2 AVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVES-DVDLDDYDGLILPGGPG 57 (115)
T ss_pred EEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCCceec-cCChhccCEEEECCCCC
Confidence 344544444556778889999999999987655542211 23456779988865433
No 37
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=59.36 E-value=43 Score=24.47 Aligned_cols=78 Identities=14% Similarity=0.060 Sum_probs=44.3
Q ss_pred EEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCC---CCHHHHHHHHHCCCc
Q 013932 34 VLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGS---IDVASIVDFVDSGHD 110 (433)
Q Consensus 34 Vl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~---ls~~~L~~Fid~GGN 110 (433)
++.++......+..+.+.++..|++++...+.+..... ......||.||+........... --.+.+.++..+|+-
T Consensus 3 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (92)
T cd03128 3 VLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVES-DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKP 81 (92)
T ss_pred EEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCCcccc-cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCE
Confidence 44444444446667888888999999887655543211 23345678988876644322110 112556666666444
Q ss_pred EE
Q 013932 111 LI 112 (433)
Q Consensus 111 lL 112 (433)
++
T Consensus 82 i~ 83 (92)
T cd03128 82 VL 83 (92)
T ss_pred EE
Confidence 43
No 38
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=58.92 E-value=75 Score=29.58 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=60.3
Q ss_pred eEEEEEcCcc--cccchhhHHHHhhc-CCcEEEEecCCCCCcc-c---------------ccccccccCEEEEeCCCCCc
Q 013932 31 RVLVLVDDFA--IKSSHSLYFGSLTS-RGFQLEFKLADDPNIG-L---------------QRYGQYLYDALVLFCPSVER 91 (433)
Q Consensus 31 r~LVl~d~~~--~~~~~S~F~~~L~~-rGf~v~~~~~~d~~~~-L---------------~~~ge~~yd~LII~~p~~~~ 91 (433)
|+||++.+.. .+..-..+.+.+++ .|.+++.....+.... + ....-..||.||+.+|..-
T Consensus 3 kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPty~- 81 (200)
T PRK03767 3 KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPTRF- 81 (200)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEecccC-
Confidence 7899997652 23333457777887 8999886533221100 0 0223356799999999753
Q ss_pred CCCCCCHHHHHHHHHCC----------CcEE-EEeCCC-----C---cHHHHHHHHHcCceecCC
Q 013932 92 FGGSIDVASIVDFVDSG----------HDLI-VAADSN-----A---SDLIREVATECGVDFDED 137 (433)
Q Consensus 92 ~~~~ls~~~L~~Fid~G----------GNlL-v~~~~~-----~---~~~lr~ll~elGI~~~p~ 137 (433)
+.+ ...++.|+|.- |... +.+..+ . ...++.++..+|+.+-+.
T Consensus 82 --g~~-~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~~ 143 (200)
T PRK03767 82 --GNM-AGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGL 143 (200)
T ss_pred --CCc-hHHHHHHHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeCC
Confidence 323 34677777763 3333 333321 2 245666668999998775
No 39
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=56.52 E-value=15 Score=33.76 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=44.3
Q ss_pred eEEEEEcCc--ccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCC-cCCCCCCHHHHHHHHHC
Q 013932 31 RVLVLVDDF--AIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVE-RFGGSIDVASIVDFVDS 107 (433)
Q Consensus 31 r~LVl~d~~--~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~-~~~~~ls~~~L~~Fid~ 107 (433)
|+|++|-.+ +.+.--+.....|+++|++++....... ..-.-..||.+||.+|-.- .+ .+.+.+|+.+
T Consensus 2 k~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~----~~~~l~~ydavVIgAsI~~~h~-----~~~~~~Fv~k 72 (175)
T COG4635 2 KTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAV----EEPALEDYDAVVIGASIRYGHF-----HEAVQSFVKK 72 (175)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhh----hccChhhCceEEEecchhhhhh-----HHHHHHHHHH
Confidence 789999543 3456667788999999999998622211 1112345699999998653 22 2556666653
No 40
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=51.26 E-value=28 Score=32.65 Aligned_cols=41 Identities=20% Similarity=0.489 Sum_probs=31.8
Q ss_pred eeeccCCCeEEEEEEeCceEeeccccCCCceEEEEEecCCceeeeEEEEe
Q 013932 327 WEPYVSDDVQVQFYMMSPYVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVE 376 (433)
Q Consensus 327 W~P~~~~diQlEf~mldPy~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~ 376 (433)
++|+...+.. ||+..|+ .++-.|.++|++|++-||..+.+-
T Consensus 41 YvP~~~~~~~-eF~L~d~--------~~~~iy~~~~~l~~~~GIv~i~LP 81 (189)
T PF06051_consen 41 YVPYTSAETV-EFVLQDE--------QGNPIYQTTFPLPQQPGIVSITLP 81 (189)
T ss_pred EecCCCCcce-EEEEecC--------CCCEEeEEEEecCCCCCEEEEECC
Confidence 5677755544 9996664 245679999999999999999887
No 41
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=51.12 E-value=38 Score=28.14 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=22.8
Q ss_pred HHHHHHHHC---CCcEEEEeCCCCcHHHHHHHHHcCce
Q 013932 99 ASIVDFVDS---GHDLIVAADSNASDLIREVATECGVD 133 (433)
Q Consensus 99 ~~L~~Fid~---GGNlLv~~~~~~~~~lr~ll~elGI~ 133 (433)
..+.+|+.+ ++.++++++ +.+++.++++|++
T Consensus 68 ~~~~~~l~~~~~~~~v~vlG~----~~l~~~l~~~G~e 101 (101)
T PF13344_consen 68 MAAAEYLKEHKGGKKVYVLGS----DGLREELREAGFE 101 (101)
T ss_dssp HHHHHHHHHHTTSSEEEEES-----HHHHHHHHHTTEE
T ss_pred HHHHHHHHhcCCCCEEEEEcC----HHHHHHHHHcCCC
Confidence 455566654 778888874 4799999999986
No 42
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=50.08 E-value=93 Score=28.46 Aligned_cols=101 Identities=16% Similarity=0.163 Sum_probs=65.8
Q ss_pred EcCccc-ccchh---hHHHHhhcCCcEEEEecCCCCCccc-ccccccccCEEEEeCCCCCcCCC--C----CCHHHHHHH
Q 013932 36 VDDFAI-KSSHS---LYFGSLTSRGFQLEFKLADDPNIGL-QRYGQYLYDALVLFCPSVERFGG--S----IDVASIVDF 104 (433)
Q Consensus 36 ~d~~~~-~~~~S---~F~~~L~~rGf~v~~~~~~d~~~~L-~~~ge~~yd~LII~~p~~~~~~~--~----ls~~~L~~F 104 (433)
+|...+ ...|. .-.+.|++.|-.|-+- .|-+++.- ....-..||.+|-.=|-.-.... . ...+.|.+|
T Consensus 29 ~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~F 107 (166)
T PF10354_consen 29 YDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGF 107 (166)
T ss_pred cCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHH
Confidence 366533 56666 7888999999888753 23332221 12245668999998886541111 0 223567778
Q ss_pred HHC-------CCcEEEEeCCCCc---HHHHHHHHHcCceecCC
Q 013932 105 VDS-------GHDLIVAADSNAS---DLIREVATECGVDFDED 137 (433)
Q Consensus 105 id~-------GGNlLv~~~~~~~---~~lr~ll~elGI~~~p~ 137 (433)
+.+ +|.|.|+.-.+.+ =+|..++++.|+.+...
T Consensus 108 f~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 108 FKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRK 150 (166)
T ss_pred HHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEE
Confidence 776 9999998865543 26889999998888764
No 43
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=49.75 E-value=1.7e+02 Score=25.42 Aligned_cols=96 Identities=14% Similarity=0.164 Sum_probs=50.0
Q ss_pred eEEEEEcCcc--cccchhhHHHHhhcCCcEEEE-ecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH-
Q 013932 31 RVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEF-KLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD- 106 (433)
Q Consensus 31 r~LVl~d~~~--~~~~~S~F~~~L~~rGf~v~~-~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid- 106 (433)
|+||+|.... .+.-=....+.|+.+|++++. ....+ +.-.......||.+||.+|..- . +. -+..+.+|++
T Consensus 2 ~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~d~iilgs~t~~-~-g~-~p~~~~~fl~~ 76 (140)
T TIGR01754 2 RILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGT--LADAPLDPENYDLVFLGTWTWE-R-GR-TPDEMKDFIAE 76 (140)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccc--cccCcCChhhCCEEEEEcCeeC-C-Cc-CCHHHHHHHHH
Confidence 6889997642 122223456778888998862 11111 0000112335799999998742 2 21 2234444444
Q ss_pred ---CCCcEEEEeCC--CCc-----HHHHHHHHHcC
Q 013932 107 ---SGHDLIVAADS--NAS-----DLIREVATECG 131 (433)
Q Consensus 107 ---~GGNlLv~~~~--~~~-----~~lr~ll~elG 131 (433)
+|-++.+.+.. .-. ..++.+.+.|.
T Consensus 77 l~~~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~ 111 (140)
T TIGR01754 77 LGYKPSNVAIFGTGETQWGDDLYCGAVDRLAHFFG 111 (140)
T ss_pred hcccCCEEEEEEcCCCCcCcchHhHHHHHHHHHHc
Confidence 35555555532 221 46666666664
No 44
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=48.84 E-value=51 Score=29.19 Aligned_cols=96 Identities=21% Similarity=0.202 Sum_probs=54.0
Q ss_pred eEEEEEcCcccccchhhHHHHhhcCCcEEEEecCC-CCCc-------cc------ccccccccCEEEEeCCCC-CcCCCC
Q 013932 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLAD-DPNI-------GL------QRYGQYLYDALVLFCPSV-ERFGGS 95 (433)
Q Consensus 31 r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~-d~~~-------~L------~~~ge~~yd~LII~~p~~-~~~~~~ 95 (433)
|++|++-+.-.........+.|+..||++++..++ ...+ .+ .......||.|+|-.-.. +.+..+
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~ 80 (165)
T cd03134 1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRD 80 (165)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccC
Confidence 56777766666677778888999999999998777 4322 11 111123589888865421 112111
Q ss_pred CC-HHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 96 ID-VASIVDFVDSGHDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 96 ls-~~~L~~Fid~GGNlLv~~~~~~~~~lr~ll~elGI 132 (433)
-. .+-|.++.++|..|. +...+. .++.+.|+
T Consensus 81 ~~~~~~l~~~~~~~~~i~-~ic~G~-----~~La~agl 112 (165)
T cd03134 81 PDAVAFVRAFAEAGKPVA-AICHGP-----WVLISAGV 112 (165)
T ss_pred HHHHHHHHHHHHcCCeEE-EEchHH-----HHHHhcCc
Confidence 11 133556666666544 333221 34566665
No 45
>PRK07053 glutamine amidotransferase; Provisional
Probab=47.52 E-value=1.1e+02 Score=29.48 Aligned_cols=98 Identities=10% Similarity=0.159 Sum_probs=58.4
Q ss_pred CeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCC----C--CHHHHHH
Q 013932 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGS----I--DVASIVD 103 (433)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~----l--s~~~L~~ 103 (433)
+|+||+--.. .+....+.+.|+.+|+++++..+.+..... -....||.|||........... + ..+.|.+
T Consensus 3 ~~ilviqh~~--~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~--~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~ 78 (234)
T PRK07053 3 KTAVAIRHVA--FEDLGSFEQVLGARGYRVRYVDVGVDDLET--LDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQ 78 (234)
T ss_pred ceEEEEECCC--CCCChHHHHHHHHCCCeEEEEecCCCccCC--CCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHH
Confidence 4677775432 345567999999999999986554332211 1223579999977433222111 1 1255666
Q ss_pred HHHCCCcEE-EEeCCCCcHHHHHHHHHcCceecCC
Q 013932 104 FVDSGHDLI-VAADSNASDLIREVATECGVDFDED 137 (433)
Q Consensus 104 Fid~GGNlL-v~~~~~~~~~lr~ll~elGI~~~p~ 137 (433)
+++.|--+| |-. +.+-++..+|-.+.+.
T Consensus 79 ~~~~~~PvlGIC~------G~Qlla~alGg~V~~~ 107 (234)
T PRK07053 79 RLAAGLPTLGICL------GAQLIARALGARVYPG 107 (234)
T ss_pred HHHCCCCEEEECc------cHHHHHHHcCCcEecC
Confidence 777787777 332 3556777887666553
No 46
>PRK06490 glutamine amidotransferase; Provisional
Probab=46.64 E-value=89 Score=30.28 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=59.4
Q ss_pred CCCCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCC--CC--HHHHH
Q 013932 27 PTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGS--ID--VASIV 102 (433)
Q Consensus 27 ~~~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~--ls--~~~L~ 102 (433)
+.-.|+|||.+... +..+.+-+.|+++|+++++..+.+... + ......||.+||......-.... +. .+.|.
T Consensus 5 ~~~~~vlvi~h~~~--~~~g~l~~~l~~~g~~~~v~~~~~~~~-~-p~~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~ 80 (239)
T PRK06490 5 RDKRPVLIVLHQER--STPGRVGQLLQERGYPLDIRRPRLGDP-L-PDTLEDHAGAVIFGGPMSANDPDDFIRREIDWIS 80 (239)
T ss_pred CCCceEEEEecCCC--CCChHHHHHHHHCCCceEEEeccCCCC-C-CCcccccCEEEEECCCCCCCCCchHHHHHHHHHH
Confidence 45679999987653 445568889999999999865442211 1 11234579999987654311110 11 14455
Q ss_pred HHHHCCCcEE-EEeCCCCcHHHHHHHHHcCceecC
Q 013932 103 DFVDSGHDLI-VAADSNASDLIREVATECGVDFDE 136 (433)
Q Consensus 103 ~Fid~GGNlL-v~~~~~~~~~lr~ll~elGI~~~p 136 (433)
+.+++|--+| |- -+.+-++..+|=.+.+
T Consensus 81 ~~~~~~~PvLGIC------~G~Qlla~alGG~V~~ 109 (239)
T PRK06490 81 VPLKENKPFLGIC------LGAQMLARHLGARVAP 109 (239)
T ss_pred HHHHCCCCEEEEC------HhHHHHHHHcCCEeec
Confidence 5667777766 32 2455677777755443
No 47
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=46.63 E-value=32 Score=30.47 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=25.4
Q ss_pred EEeCceEeeccccCCCceEEE--EEecCCceeeeEEEEeee
Q 013932 340 YMMSPYVLKTLSTDQKGHYSA--EFKVPDVYGVFQFKVEYQ 378 (433)
Q Consensus 340 ~mldPy~R~~l~~~~~~~y~~--~f~~PD~hGvf~f~v~Y~ 378 (433)
.|.|||++..|.+.+.-+.+| ..+--|--|+|..+.-|.
T Consensus 23 ~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~ 63 (133)
T cd08374 23 KMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFP 63 (133)
T ss_pred cccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEe
Confidence 499999999998743222222 455556667777665554
No 48
>PRK06242 flavodoxin; Provisional
Probab=46.00 E-value=72 Score=27.79 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=35.5
Q ss_pred ccccCEEEEeCCCCCcCCCCCCHHHHHHHHH-----CCCcEEEEeCCC-----CcHHHHHHHHHcCceecC
Q 013932 76 QYLYDALVLFCPSVERFGGSIDVASIVDFVD-----SGHDLIVAADSN-----ASDLIREVATECGVDFDE 136 (433)
Q Consensus 76 e~~yd~LII~~p~~~~~~~~ls~~~L~~Fid-----~GGNlLv~~~~~-----~~~~lr~ll~elGI~~~p 136 (433)
...||.||+.+|.-. +.+. ..+.+|++ +|..+.+.+..+ ..+.++.++++.|.++..
T Consensus 41 ~~~~d~ii~g~pvy~---~~~~-~~~~~fl~~~~~~~~k~~~~f~t~g~~~~~~~~~l~~~l~~~g~~~~~ 107 (150)
T PRK06242 41 LSEYDLIGFGSGIYF---GKFH-KSLLKLIEKLPPVSGKKAFIFSTSGLPFLKYHKALKKKLKEKGFEIVG 107 (150)
T ss_pred HhHCCEEEEeCchhc---CCcC-HHHHHHHHhhhhhcCCeEEEEECCCCCcchHHHHHHHHHHHCCCEEEE
Confidence 356799999999653 2233 34555654 355666554322 236677888888888765
No 49
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=45.84 E-value=21 Score=32.39 Aligned_cols=51 Identities=14% Similarity=0.389 Sum_probs=31.1
Q ss_pred ccccCEEEEeCCCCCcCCCCCCHHH----HHHHHHCCCcEEEEeCCCCc-HHHHHHHHHcC
Q 013932 76 QYLYDALVLFCPSVERFGGSIDVAS----IVDFVDSGHDLIVAADSNAS-DLIREVATECG 131 (433)
Q Consensus 76 e~~yd~LII~~p~~~~~~~~ls~~~----L~~Fid~GGNlLv~~~~~~~-~~lr~ll~elG 131 (433)
...+|.+|++=||.|. +.+. |..-+..||.|+|.++...+ +.+..+++++|
T Consensus 67 ~~~~D~vvly~PKaK~-----e~~~lL~~l~~~L~~g~~i~vVGEnk~GIkSa~K~L~~~~ 122 (155)
T PF08468_consen 67 DQDFDTVVLYWPKAKA-----EAQYLLANLLSHLPPGTEIFVVGENKGGIKSAEKQLAPYG 122 (155)
T ss_dssp HTT-SEEEEE--SSHH-----HHHHHHHHHHTTS-TT-EEEEEEEGGGTGGGHHHHHTTTS
T ss_pred ccCCCEEEEEccCcHH-----HHHHHHHHHHHhCCCCCEEEEEecCcccHHHHHHHHHhhC
Confidence 3467999999999983 3444 44445569999999986543 45556666664
No 50
>PRK06934 flavodoxin; Provisional
Probab=45.04 E-value=1.1e+02 Score=29.46 Aligned_cols=54 Identities=24% Similarity=0.169 Sum_probs=32.6
Q ss_pred ccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH----CCCcEEEEe---CCCCcHHHHHHHHHcC
Q 013932 74 YGQYLYDALVLFCPSVERFGGSIDVASIVDFVD----SGHDLIVAA---DSNASDLIREVATECG 131 (433)
Q Consensus 74 ~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid----~GGNlLv~~---~~~~~~~lr~ll~elG 131 (433)
.+...||.|+|--|-=- + --+..+..||+ .|.+|.... +++.+..++.+.+.|+
T Consensus 125 ~dl~~YD~I~IG~PIWw--g--~~P~~V~tFLe~~d~~GK~I~pF~T~ggsg~g~s~~~i~~l~~ 185 (221)
T PRK06934 125 QNLADYDQIFIGYPIWW--Y--KMPMVMYSFFEQHDFSGKTLIPFTTHGGSRFSDSLREIKRLQP 185 (221)
T ss_pred HhHHhCCEEEEEcchhh--c--cccHHHHHHHHhcCCCCCEEEEEEecCCCCccchHHHHHHHcC
Confidence 34556788888888432 2 13456677776 466666433 2344567777777664
No 51
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=44.95 E-value=1.4e+02 Score=27.93 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=56.4
Q ss_pred hhHHHHhhcCCcEEEEecCCCCCc-----------cc--ccccccccCEEEEeCCCCCcCCCCCCH--HHHHHHHHC---
Q 013932 46 SLYFGSLTSRGFQLEFKLADDPNI-----------GL--QRYGQYLYDALVLFCPSVERFGGSIDV--ASIVDFVDS--- 107 (433)
Q Consensus 46 S~F~~~L~~rGf~v~~~~~~d~~~-----------~L--~~~ge~~yd~LII~~p~~~~~~~~ls~--~~L~~Fid~--- 107 (433)
..+.+.|++.|++++.....|-.+ .+ ........|.+||..|--. ++++. |.+.|++..
T Consensus 21 ~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~---~s~pg~LKn~iD~l~~~~l 97 (191)
T PRK10569 21 EYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYK---ASFSGALKTLLDLLPERAL 97 (191)
T ss_pred HHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccC---CCCCHHHHHHHHhCChhhh
Confidence 357778888899988643222111 11 1122334599999999654 33444 666665542
Q ss_pred CCc-EEEEeCCCC------c-HHHHHHHHHcCceecCCCCeEEEe
Q 013932 108 GHD-LIVAADSNA------S-DLIREVATECGVDFDEDPAAMVID 144 (433)
Q Consensus 108 GGN-lLv~~~~~~------~-~~lr~ll~elGI~~~p~~~~~VvD 144 (433)
.|. +++++..+. . ..+|+++..+|....|. +..+.+
T Consensus 98 ~~K~v~iiat~G~~~~~~~~~~~lr~~l~~l~a~~~~~-~~~~~~ 141 (191)
T PRK10569 98 EHKVVLPLATGGSVAHMLAVDYALKPVLSALKAQEILH-GVFADD 141 (191)
T ss_pred CCCEEEEEEecCCchhHHHHHHHHHHHHHHcCCeecCc-eEEEec
Confidence 243 333332232 1 57889999999998887 666666
No 52
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=44.41 E-value=62 Score=27.71 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=47.2
Q ss_pred hHHHHhhcCCcEEEEecCCCCCccc-ccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCC-C-cEEEEeCCCCcHHH
Q 013932 47 LYFGSLTSRGFQLEFKLADDPNIGL-QRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG-H-DLIVAADSNASDLI 123 (433)
Q Consensus 47 ~F~~~L~~rGf~v~~~~~~d~~~~L-~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~G-G-NlLv~~~~~~~~~l 123 (433)
-+...|+..||++.+..++-+.-.+ ..-.+...|.+.|........ -..+.+.+=+.+- - ++.+..+...++..
T Consensus 18 ~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~---~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~ 94 (122)
T cd02071 18 VIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHM---TLFPEVIELLRELGAGDILVVGGGIIPPED 94 (122)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhH---HHHHHHHHHHHhcCCCCCEEEEECCCCHHH
Confidence 3566788999999987665432222 333455668888865543311 1224444444443 3 45544433334445
Q ss_pred HHHHHHcCce
Q 013932 124 REVATECGVD 133 (433)
Q Consensus 124 r~ll~elGI~ 133 (433)
.+.+.++||+
T Consensus 95 ~~~~~~~G~d 104 (122)
T cd02071 95 YELLKEMGVA 104 (122)
T ss_pred HHHHHHCCCC
Confidence 5778889973
No 53
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=44.34 E-value=1.8e+02 Score=31.29 Aligned_cols=105 Identities=6% Similarity=0.092 Sum_probs=63.7
Q ss_pred CCCeEEEEEcCc--ccccchhhHHHHhhcC--CcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHH
Q 013932 28 TDRRVLVLVDDF--AIKSSHSLYFGSLTSR--GFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVD 103 (433)
Q Consensus 28 ~~~r~LVl~d~~--~~~~~~S~F~~~L~~r--Gf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~ 103 (433)
..+|++|+|++. +.+.-=....+.|++. |.+++....++.+.+-.......||.+|+-+|+.. +..-+ .+.+
T Consensus 250 ~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~~ad~vilGspT~~---~~~~p-~~~~ 325 (479)
T PRK05452 250 QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGSSTMN---NVMMP-KIAG 325 (479)
T ss_pred CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHhhCCEEEEECCccC---CcchH-HHHH
Confidence 468899999875 2333334577788876 56766554444433322233346799999999853 22333 3555
Q ss_pred HHHC------CCcEE-EEeCCC----CcHHHHHHHHHcCceecC
Q 013932 104 FVDS------GHDLI-VAADSN----ASDLIREVATECGVDFDE 136 (433)
Q Consensus 104 Fid~------GGNlL-v~~~~~----~~~~lr~ll~elGI~~~p 136 (433)
|++. .|... +.++-+ ..+.+.+.++++|+...+
T Consensus 326 fl~~l~~~~l~gK~~~vFGSygw~g~a~~~~~~~l~~~g~~~~~ 369 (479)
T PRK05452 326 LLEEITGLRFRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSL 369 (479)
T ss_pred HHHHhhccCcCCCEEEEEECCCcCcHHHHHHHHHHHHCCCEEec
Confidence 5443 34444 444432 246777888889999965
No 54
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=42.67 E-value=50 Score=35.29 Aligned_cols=82 Identities=13% Similarity=0.230 Sum_probs=58.8
Q ss_pred EEeCCCCCcC-CCCCCHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecCCCCeEEEeccCccccCCCCCceEEe
Q 013932 83 VLFCPSVERF-GGSIDVASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFDEDPAAMVIDHINYAVSNFDGDHTLIA 161 (433)
Q Consensus 83 II~~p~~~~~-~~~ls~~~L~~Fid~GGNlLv~~~~~~~~~lr~ll~elGI~~~p~~~~~VvDhf~~~~~~~~~~~~~i~ 161 (433)
+|..++.+++ +...+.-.-.-|+.+||+|+|+-+-...+.+=.+.-...|+-+|. ..+.++.-=|..+.+..+.++++
T Consensus 264 il~~~s~k~~~~~~~E~~~As~~~~kya~i~Vl~~~~~~~~~p~~~~r~niytdp~-~p~~v~~g~y~~g~p~~~spv~~ 342 (450)
T PRK04165 264 IIAFPIEAWMSDPMKEAAIASTLIAKYADILVLHDIEPWELLPLLTLRQNIYTDPQ-KPVAVEPGIYEIGNPDENSPVLV 342 (450)
T ss_pred EEEcchhhcccchHHHHHHHHHHHHhCCcEEEEcCCCHHHHhhHHHHHHhccCCCC-CCeecCCCceeCCCCCCCCCEEE
Confidence 4445556554 333344556679999999999988777777778888899999998 66788877776555544556777
Q ss_pred eccc
Q 013932 162 SDDF 165 (433)
Q Consensus 162 ~~~~ 165 (433)
+.|+
T Consensus 343 t~nf 346 (450)
T PRK04165 343 TTNF 346 (450)
T ss_pred Eeee
Confidence 7765
No 55
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=41.62 E-value=85 Score=29.04 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=49.5
Q ss_pred EEEEcCcccccchh-hHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCC-CCCHHHHHHHHHCCCc
Q 013932 33 LVLVDDFAIKSSHS-LYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGG-SIDVASIVDFVDSGHD 110 (433)
Q Consensus 33 LVl~d~~~~~~~~S-~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~-~ls~~~L~~Fid~GGN 110 (433)
+.++|+. ++|+ .+.+.|+++|+++.....++.+ +.+.....+|.|||.+-..+ ... ..+.+.|.++ +++--
T Consensus 2 il~id~~---dsft~~~~~~l~~~g~~v~v~~~~~~~--~~~~~~~~~d~iilsgGpg~-p~~~~~~~~~i~~~-~~~~P 74 (188)
T TIGR00566 2 VLMIDNY---DSFTYNLVQYFCELGAEVVVKRNDSLT--LQEIEALLPLLIVISPGPCT-PNEAGISLEAIRHF-AGKLP 74 (188)
T ss_pred EEEEECC---cCHHHHHHHHHHHcCCceEEEECCCCC--HHHHHhcCCCEEEEcCCCCC-hhhcchhHHHHHHh-ccCCC
Confidence 4556764 3333 3677888899999876545443 33333445788888554333 111 1233444444 44444
Q ss_pred EEEEeCCCCcHHHHHHHHHcCceecC
Q 013932 111 LIVAADSNASDLIREVATECGVDFDE 136 (433)
Q Consensus 111 lLv~~~~~~~~~lr~ll~elGI~~~p 136 (433)
+| + +=-+.+-++..+|=++.+
T Consensus 75 vL--G---IC~G~Qll~~~~GG~v~~ 95 (188)
T TIGR00566 75 IL--G---VCLGHQAMGQAFGGDVVR 95 (188)
T ss_pred EE--E---ECHHHHHHHHHcCCEEee
Confidence 44 1 123566777778754443
No 56
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=41.30 E-value=71 Score=29.35 Aligned_cols=67 Identities=16% Similarity=0.154 Sum_probs=39.7
Q ss_pred eEEEEEcCc-ccccchh-hHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013932 31 RVLVLVDDF-AIKSSHS-LYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD 106 (433)
Q Consensus 31 r~LVl~d~~-~~~~~~S-~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid 106 (433)
|+||+|... +.-.... ...+.|+. |++++....++... .....||.+||.+|... +.. ...+.+|++
T Consensus 2 kilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~----~~l~~yD~vIlGspi~~---G~~-~~~~~~fl~ 70 (177)
T PRK11104 2 KTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHRIEE----PDLSDYDRVVIGASIRY---GHF-HSALYKFVK 70 (177)
T ss_pred cEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhcCc----cCHHHCCEEEEECcccc---CCc-CHHHHHHHH
Confidence 689999874 2223333 34567777 99888654443321 12334799999998743 223 355666663
No 57
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=41.09 E-value=46 Score=32.16 Aligned_cols=39 Identities=21% Similarity=0.350 Sum_probs=22.3
Q ss_pred CCeEEEEEcCcccc--------------cchhhHHHHhhcCCcEEEEecCCCC
Q 013932 29 DRRVLVLVDDFAIK--------------SSHSLYFGSLTSRGFQLEFKLADDP 67 (433)
Q Consensus 29 ~~r~LVl~d~~~~~--------------~~~S~F~~~L~~rGf~v~~~~~~d~ 67 (433)
.....+++|...+- ..--.|.+.|+++||+|.+...+|+
T Consensus 21 ~~~~v~mvE~~~~~~~~~~HkqKl~l~~saMRhfa~~L~~~G~~V~Y~~~~~~ 73 (224)
T PF04244_consen 21 ADDRVLMVEVPEEFTYVPHHKQKLVLFFSAMRHFADELRAKGFRVHYIELDDP 73 (224)
T ss_dssp TT-EEEEE--HHHHHSS---HHHHHHHHHHHHHHHHHHHHTT--EEEE-TT-T
T ss_pred CCCEEEEEEchHHhCcCcccHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 44556666665441 3444699999999999999866654
No 58
>PLN02931 nucleoside diphosphate kinase family protein
Probab=40.62 E-value=55 Score=30.53 Aligned_cols=51 Identities=14% Similarity=0.185 Sum_probs=35.1
Q ss_pred HHHHhhhhccccc---cCCCCCCeEEEEEcCcccccc-hhhHHHHhhcCCcEEEE
Q 013932 11 ATSLIPLFSVAFS---PENPTDRRVLVLVDDFAIKSS-HSLYFGSLTSRGFQLEF 61 (433)
Q Consensus 11 ~~~~~~~~~~~~~---~~s~~~~r~LVl~d~~~~~~~-~S~F~~~L~~rGf~v~~ 61 (433)
++||++.+.|--. .......|||+++-..+.+.. -....+.++++||+|.-
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~ 62 (177)
T PLN02931 8 PLFLLLLASFPIRCSSSGASEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVK 62 (177)
T ss_pred HHHHHHHcccccccCCCCCCcceeEEEEECchhhhcccHHHHHHHHHHCCCEEEe
Confidence 4456666654333 233346799999977766433 36789999999999985
No 59
>PLN02335 anthranilate synthase
Probab=40.54 E-value=43 Score=32.08 Aligned_cols=60 Identities=7% Similarity=0.073 Sum_probs=35.7
Q ss_pred CCCCCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCC
Q 013932 26 NPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV 89 (433)
Q Consensus 26 s~~~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~ 89 (433)
|++..+.++|+|+. ...+| .+.+.|+++|.++....++.. .+.+.....+|.|||.+-..
T Consensus 14 ~~~~~~~ilviD~~-dsft~-~i~~~L~~~g~~~~v~~~~~~--~~~~~~~~~~d~iVisgGPg 73 (222)
T PLN02335 14 SSKQNGPIIVIDNY-DSFTY-NLCQYMGELGCHFEVYRNDEL--TVEELKRKNPRGVLISPGPG 73 (222)
T ss_pred ccCccCcEEEEECC-CCHHH-HHHHHHHHCCCcEEEEECCCC--CHHHHHhcCCCEEEEcCCCC
Confidence 44455555556763 12222 477788899999998755433 23322334578888876543
No 60
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=40.48 E-value=27 Score=25.53 Aligned_cols=34 Identities=12% Similarity=0.302 Sum_probs=24.8
Q ss_pred ecCCceeeeEEEEeeeeccceeeeeeeeEeecCC
Q 013932 363 KVPDVYGVFQFKVEYQRLGYTSLSLSKQIPVRPY 396 (433)
Q Consensus 363 ~~PD~hGvf~f~v~Y~R~G~t~l~~~~~v~VR~~ 396 (433)
.||++..-++|++.||..=+..--.++.+.|+-.
T Consensus 2 ~LP~~w~~l~F~~~~rg~~l~v~i~~~~v~v~~~ 35 (54)
T PF03633_consen 2 RLPKQWSSLSFRLRYRGHWLEVEITHEKVTVTLL 35 (54)
T ss_dssp ---TT-SEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred cCCCccCEeEEEEEECCEEEEEEEECCEEEEEEc
Confidence 5899999999999999887877777777777644
No 61
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=40.32 E-value=2.5e+02 Score=26.20 Aligned_cols=113 Identities=19% Similarity=0.350 Sum_probs=67.7
Q ss_pred ceEeCCceEEEEEEEEEeCCeeee--cc--CCCeEEEEEEeCceEeeccccCCCceEEEEEecCCceeeeEE---EEeee
Q 013932 306 IYRINDDLEYSVEIYEWSGTSWEP--YV--SDDVQVQFYMMSPYVLKTLSTDQKGHYSAEFKVPDVYGVFQF---KVEYQ 378 (433)
Q Consensus 306 ~Y~i~d~v~y~i~i~e~~~~~W~P--~~--~~diQlEf~mldPy~R~~l~~~~~~~y~~~f~~PD~hGvf~f---~v~Y~ 378 (433)
.|-+.+.--|.|.|.. +.|.| |. .......+-+|+|.-..++ ....+ |-+.|.|.| .|.|+
T Consensus 46 iyN~G~~~A~dV~l~D---~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh--------~~vv~-p~~~G~f~~~~a~VtY~ 113 (181)
T PF05753_consen 46 IYNVGSSAAYDVKLTD---DSFPPEDFELVSGSLSASWERIPPGENVSH--------SYVVR-PKKSGYFNFTPAVVTYR 113 (181)
T ss_pred EEECCCCeEEEEEEEC---CCCCccccEeccCceEEEEEEECCCCeEEE--------EEEEe-eeeeEEEEccCEEEEEE
Confidence 3556666677777654 56643 32 3456677778877654432 22332 777888876 57885
Q ss_pred ec-cceeeeeeeeEeecC---CCCCcccccccCCcchhhHHHHHHHHHhhheeeee
Q 013932 379 RL-GYTSLSLSKQIPVRP---YRHNEYERFLPAAYPYYGSAFSMMAGFFIFTIVHL 430 (433)
Q Consensus 379 R~-G~t~l~~~~~v~VR~---~~hdey~Rfi~~a~pyy~s~~s~~~g~~~F~~~~L 430 (433)
.. |=+-+.....-+.++ ++-.+|.|-...++-.|....+|++..++|.++..
T Consensus 114 ~~~~~~~~~~a~Ss~~~~~~I~~~~~~~k~f~~~~~~w~~f~~~~~~~~~~p~ll~ 169 (181)
T PF05753_consen 114 DSEGAKELQVAYSSPPGEGDILAERDYDKKFSSHVMDWGAFAIMTLPVLLIPYLLW 169 (181)
T ss_pred CCCCCceeEEEEecCCCcceEEeccccchhhhhhHHHHHhHHHHHHHHHHHHHHhh
Confidence 44 212222222233333 44567888777778888888888888777765543
No 62
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=39.12 E-value=1.5e+02 Score=26.69 Aligned_cols=37 Identities=11% Similarity=0.175 Sum_probs=25.0
Q ss_pred HHHHHHHHCCCcEEEEeCCCC-cHHHHHHHHHcCceec
Q 013932 99 ASIVDFVDSGHDLIVAADSNA-SDLIREVATECGVDFD 135 (433)
Q Consensus 99 ~~L~~Fid~GGNlLv~~~~~~-~~~lr~ll~elGI~~~ 135 (433)
+.+.+.+..||.+.+...... .+.+.+++++.|++..
T Consensus 124 ~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 124 DELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYE 161 (179)
T ss_pred HhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEE
Confidence 344566778998776655443 5677888899886543
No 63
>PHA02909 hypothetical protein; Provisional
Probab=38.58 E-value=9.6 Score=28.84 Aligned_cols=22 Identities=36% Similarity=0.840 Sum_probs=17.2
Q ss_pred chhh-HHHHHHHHHhhheeeeec
Q 013932 410 PYYG-SAFSMMAGFFIFTIVHLY 431 (433)
Q Consensus 410 pyy~-s~~s~~~g~~~F~~~~L~ 431 (433)
.||+ ..|..|++|++|+++||.
T Consensus 25 vyytentfcimvsfilfviifls 47 (72)
T PHA02909 25 VYYTENTFCIMVSFILFVIIFLS 47 (72)
T ss_pred EEEeccchhHHHHHHHHHHHHHH
Confidence 4554 468899999999999874
No 64
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=38.15 E-value=72 Score=30.29 Aligned_cols=52 Identities=12% Similarity=0.174 Sum_probs=30.6
Q ss_pred ccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeC----CCCcHHHHHHHHHc
Q 013932 78 LYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAAD----SNASDLIREVATEC 130 (433)
Q Consensus 78 ~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GGNlLv~~~----~~~~~~lr~ll~el 130 (433)
.|-.|.+-....-.| ..-+.+.|.+|+++||=|++=.. ..-...+|.+++++
T Consensus 53 ~yP~ly~~g~~~~~~-s~~e~~~Lr~Yl~~GGfl~~D~~~~~~~~~~~~~r~~~~~v 108 (207)
T PF13709_consen 53 FYPFLYWPGHGDFPL-SDEEIANLRRYLENGGFLLFDDRDCGSAGFDASFRRLMKRV 108 (207)
T ss_pred hCCEEEEeCCCCCCC-CHHHHHHHHHHHHcCCEEEEECCCcccccccHHHHHHHHHh
Confidence 345555544433323 23445899999999997765443 22345666666554
No 65
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=37.88 E-value=1.2e+02 Score=29.23 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=41.7
Q ss_pred cchhhHHHHhhcCCcEEEEecCCCC----------------------------------CcccccccccccCEEEEeCCC
Q 013932 43 SSHSLYFGSLTSRGFQLEFKLADDP----------------------------------NIGLQRYGQYLYDALVLFCPS 88 (433)
Q Consensus 43 ~~~S~F~~~L~~rGf~v~~~~~~d~----------------------------------~~~L~~~ge~~yd~LII~~p~ 88 (433)
.....-.+-|++.||+|++.+|+.. +..+.+-....||.|+|-.-.
T Consensus 25 ~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~iPGG~ 104 (231)
T cd03147 25 SEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFFVAGGH 104 (231)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEEECCCC
Confidence 4556678899999999999876532 012222234578999885542
Q ss_pred C--CcCCCCCCH-HHHHHHHHCCCcEE
Q 013932 89 V--ERFGGSIDV-ASIVDFVDSGHDLI 112 (433)
Q Consensus 89 ~--~~~~~~ls~-~~L~~Fid~GGNlL 112 (433)
. ..|..+-.. +.|.+|.++|+ ++
T Consensus 105 g~~~dl~~~~~l~~ll~~f~~~gK-~i 130 (231)
T cd03147 105 GTLFDFPHATNLQKIAQQIYANGG-VV 130 (231)
T ss_pred chhhhcccCHHHHHHHHHHHHcCC-EE
Confidence 2 234432223 55677777765 44
No 66
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=37.06 E-value=2.5e+02 Score=30.55 Aligned_cols=91 Identities=20% Similarity=0.375 Sum_probs=52.7
Q ss_pred CCeEEEEEcCccc-ccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC
Q 013932 29 DRRVLVLVDDFAI-KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (433)
Q Consensus 29 ~~r~LVl~d~~~~-~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~ 107 (433)
++|++|+-|-..+ -..-+-+...|+..|.++.+..|+. -.+.++ ++++.+.+..+.
T Consensus 54 ~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~~v~~~ip~r---------------------~~~~yg--~~~~~i~~~~~~ 110 (539)
T TIGR00644 54 NEKILIFGDYDVDGITSTAILVEFLKDLGVNVDYYIPNR---------------------ITEGYG--LSPEALREAIEN 110 (539)
T ss_pred CCeEEEEEccCCCcHHHHHHHHHHHHHCCCceEEEeCCC---------------------CcccCC--CCHHHHHHHHhc
Confidence 5667666654322 2233346666676776665433221 113333 456667777777
Q ss_pred CCcEEEEeCCCCcHHHH-HHHHHcCceecCCCCeEEEeccCc
Q 013932 108 GHDLIVAADSNASDLIR-EVATECGVDFDEDPAAMVIDHINY 148 (433)
Q Consensus 108 GGNlLv~~~~~~~~~lr-~ll~elGI~~~p~~~~~VvDhf~~ 148 (433)
|.+++|+.|.+..+-.. ..+.+.|+ ..+++||+..
T Consensus 111 ~~~LiI~vD~G~~~~~~~~~~~~~g~------~vIviDHH~~ 146 (539)
T TIGR00644 111 GVSLIITVDNGISAHEEIDYAKELGI------DVIVTDHHEP 146 (539)
T ss_pred CCCEEEEeCCCcccHHHHHHHHhcCC------CEEEECCCCC
Confidence 88999999987754222 34566665 3588998753
No 67
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=37.04 E-value=2.3e+02 Score=25.67 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=47.3
Q ss_pred hHHHHhhcCCcEEEEecCCCCCcccc-ccccccc---CEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeCCC
Q 013932 47 LYFGSLTSRGFQLEFKLADDPNIGLQ-RYGQYLY---DALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSN 118 (433)
Q Consensus 47 ~F~~~L~~rGf~v~~~~~~d~~~~L~-~~ge~~y---d~LII~~p~~~~~~~~ls~~~L~~Fid~GGNlLv~~~~~ 118 (433)
.+++.|+..||+|+...++|-. +|. ++|++.- =|=.+..- +-+.|.+..+.|.+|++++=|+-=++-|+
T Consensus 41 ~w~~~mk~~Gf~Vk~~~~~d~~-alK~~~gIp~e~~SCHT~VI~G--y~vEGHVPa~aI~~ll~~~pd~~GlavPg 113 (149)
T COG3019 41 EWAQHMKANGFEVKVVETDDFL-ALKRRLGIPYEMQSCHTAVING--YYVEGHVPAEAIARLLAEKPDAKGLAVPG 113 (149)
T ss_pred HHHHHHHhCCcEEEEeecCcHH-HHHHhcCCChhhccccEEEEcC--EEEeccCCHHHHHHHHhCCCCcceecCCC
Confidence 5999999999999998777752 333 4665433 24444443 33457899999999999988877333343
No 68
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=36.84 E-value=1.1e+02 Score=28.23 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=53.7
Q ss_pred EEEEcCcccccchh-hHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcE
Q 013932 33 LVLVDDFAIKSSHS-LYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDL 111 (433)
Q Consensus 33 LVl~d~~~~~~~~S-~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GGNl 111 (433)
+.|+|+. ++|+ ++.+.|+.+|++++....+..+ +.+.....+|.|||.+....-... -....+.+.++++.=+
T Consensus 2 il~id~~---dsf~~nl~~~l~~~~~~~~v~~~~~~~--~~~~~~~~~~~iilsgGP~~~~~~-~~~~~~i~~~~~~~Pi 75 (191)
T PRK06774 2 LLLIDNY---DSFTYNLYQYFCELGTEVMVKRNDELQ--LTDIEQLAPSHLVISPGPCTPNEA-GISLAVIRHFADKLPI 75 (191)
T ss_pred EEEEECC---CchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHhcCCCeEEEcCCCCChHhC-CCchHHHHHhcCCCCE
Confidence 4566775 3333 3778888999999876544332 333333467988887664331111 1233444556666555
Q ss_pred E-EEeCCCCcHHHHHHHHHcCceecC
Q 013932 112 I-VAADSNASDLIREVATECGVDFDE 136 (433)
Q Consensus 112 L-v~~~~~~~~~lr~ll~elGI~~~p 136 (433)
| |- -+.+.++..+|=.+.+
T Consensus 76 LGIC------~G~Qlla~~~GG~v~~ 95 (191)
T PRK06774 76 LGVC------LGHQALGQAFGARVVR 95 (191)
T ss_pred EEEC------HHHHHHHHHhCCEEEe
Confidence 5 32 3577788888855554
No 69
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=36.80 E-value=1.2e+02 Score=28.45 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=52.2
Q ss_pred EEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEE
Q 013932 33 LVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLI 112 (433)
Q Consensus 33 LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GGNlL 112 (433)
++++|+. +..+| .+.+.|+++|+++.....+.. .+.......+|.|||.+....-.......+.+.. ++++--+|
T Consensus 2 il~idn~-dsft~-nl~~~l~~~g~~v~v~~~~~~--~~~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~-~~~~~PvL 76 (195)
T PRK07649 2 ILMIDNY-DSFTF-NLVQFLGELGQELVVKRNDEV--TISDIENMKPDFLMISPGPCSPNEAGISMEVIRY-FAGKIPIF 76 (195)
T ss_pred EEEEeCC-CccHH-HHHHHHHHCCCcEEEEeCCCC--CHHHHhhCCCCEEEECCCCCChHhCCCchHHHHH-hcCCCCEE
Confidence 4667775 22333 378899999999998754433 2222233467888886654321111122344443 33343444
Q ss_pred -EEeCCCCcHHHHHHHHHcCceecCC
Q 013932 113 -VAADSNASDLIREVATECGVDFDED 137 (433)
Q Consensus 113 -v~~~~~~~~~lr~ll~elGI~~~p~ 137 (433)
|- =+.+.++..+|-++.+.
T Consensus 77 GIC------lG~Qlla~~lGg~V~~~ 96 (195)
T PRK07649 77 GVC------LGHQSIAQVFGGEVVRA 96 (195)
T ss_pred EEc------HHHHHHHHHcCCEEeeC
Confidence 22 35667788888777653
No 70
>PF15260 FAM219A: Protein family FAM219A
Probab=36.70 E-value=22 Score=31.13 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=31.9
Q ss_pred ccCCCCCCeE-EEEEcCccccc----ch-----------hhHHHHhhcCCcEEEEecCCCCCcccc
Q 013932 23 SPENPTDRRV-LVLVDDFAIKS----SH-----------SLYFGSLTSRGFQLEFKLADDPNIGLQ 72 (433)
Q Consensus 23 ~~~s~~~~r~-LVl~d~~~~~~----~~-----------S~F~~~L~~rGf~v~~~~~~d~~~~L~ 72 (433)
+|.+.+++.. ||=+|..++.+ .| -.+..+|-+-||.++. +|||++|.|.
T Consensus 40 ~al~qs~de~pLVSLDSDSd~e~~~s~~sssg~ssaq~~q~l~~QLlkDGy~LDE-~pDdEdLDLI 104 (125)
T PF15260_consen 40 SALSQSPDENPLVSLDSDSDEELEMSRYSSSGYSSAQVNQDLSQQLLKDGYRLDE-IPDDEDLDLI 104 (125)
T ss_pred cccccCcccCcccccccCchhhhhhhhcccccccHHHHhHHHHHHHHhccccccc-CCchhccccC
Confidence 3556666666 99998654421 12 2356778889999986 5888855543
No 71
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=35.39 E-value=68 Score=25.72 Aligned_cols=45 Identities=18% Similarity=0.348 Sum_probs=24.4
Q ss_pred eeeccCCCeEEEEEEeCceEeeccccCCCceEEEEEecCCce-eeeEEEE
Q 013932 327 WEPYVSDDVQVQFYMMSPYVLKTLSTDQKGHYSAEFKVPDVY-GVFQFKV 375 (433)
Q Consensus 327 W~P~~~~diQlEf~mldPy~R~~l~~~~~~~y~~~f~~PD~h-Gvf~f~v 375 (433)
|-| .|+.|.|-... +.-....|++.++|.++++. |+-. |-|+|++
T Consensus 13 wAP-~A~~V~L~~~~-~~~~~~~m~~~~~G~W~~~v--~~l~~g~Y~Y~~ 58 (85)
T cd02858 13 FAP-KANEVQVRGSW-GGAGSHPMTKDEAGVWSVTT--GPLAPGIYTYSF 58 (85)
T ss_pred ECC-CCCEEEEEeec-CCCccEeCeECCCeEEEEEE--CCCCCcEEEEEE
Confidence 555 24555554332 12234557667789999877 4433 4344443
No 72
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=34.93 E-value=1.8e+02 Score=26.24 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=27.0
Q ss_pred eEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCC
Q 013932 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADD 66 (433)
Q Consensus 31 r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d 66 (433)
|++|++.+..+..+.....+.|+..|++++...++-
T Consensus 1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~ 36 (180)
T cd03169 1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGK 36 (180)
T ss_pred CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 566777665566777788888888999999876653
No 73
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=34.13 E-value=86 Score=35.18 Aligned_cols=95 Identities=19% Similarity=0.238 Sum_probs=60.9
Q ss_pred chhhHHHHhhcCCcEEEEecCCCCCccccccccccc-CEEEEeCCCCCcCCC-C-----CCHHHHHHHHHCCCcEEEEeC
Q 013932 44 SHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLY-DALVLFCPSVERFGG-S-----IDVASIVDFVDSGHDLIVAAD 116 (433)
Q Consensus 44 ~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~y-d~LII~~p~~~~~~~-~-----ls~~~L~~Fid~GGNlLv~~~ 116 (433)
+|.-.+++|...-++|+|..=+| +.+.|.+.- |.||=.......+.| . -..+.|.+|+.+||.++=.++
T Consensus 469 sy~GvlE~LSG~p~dV~FisFdD----i~~~gi~~didViIN~G~a~ta~SGG~~W~d~~~~~aLr~fV~~GGglIGVgD 544 (719)
T TIGR02336 469 SYYGILECLSGMPVEVEFISFDD----ILEHGIDSDIDVIINGGDADTAWSGGDVWTNPKLVETVRAWVRGGGGFVGVGE 544 (719)
T ss_pred hHHHHHHHhcCCCeeEEEecHHH----HhhcCCCcCCcEEEecCcccccccCccccCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 34457899999999999983333 345577766 555544444444533 1 122899999999999994455
Q ss_pred CCC----cHHHHHHHHHcCceecCCCCeEEEe
Q 013932 117 SNA----SDLIREVATECGVDFDEDPAAMVID 144 (433)
Q Consensus 117 ~~~----~~~lr~ll~elGI~~~p~~~~~VvD 144 (433)
|.. ...- .|+.-|||+-+.. .++=.|
T Consensus 545 psa~v~~G~~P-qLadvLGV~~E~f-~tL~~d 574 (719)
T TIGR02336 545 PSAAPQNGRFF-QLADVIGVDKERY-QTLSVD 574 (719)
T ss_pred CccCCcCCCCc-chhhhcceeeeee-eccccc
Confidence 532 1122 6788889999886 443333
No 74
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=33.65 E-value=2e+02 Score=27.26 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=58.4
Q ss_pred CCCeEEEEEcC-cccccchhhHHHHhhcCCcEEEEecCCCCCcc--cccccccccC--EEEEeCCCCCcCCCCCCHHHHH
Q 013932 28 TDRRVLVLVDD-FAIKSSHSLYFGSLTSRGFQLEFKLADDPNIG--LQRYGQYLYD--ALVLFCPSVERFGGSIDVASIV 102 (433)
Q Consensus 28 ~~~r~LVl~d~-~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~--L~~~ge~~yd--~LII~~p~~~~~~~~ls~~~L~ 102 (433)
.|+++.+|..+ +..-..+....+.|.++|.+++.. |.=++++ ....|.+.-+ ..+.+-+... ....+.
T Consensus 89 ~g~~Vv~l~~GDP~~y~~~~~l~~~~~~~~~~vevi-PGiSs~~~a~a~~g~~l~~~~~~~~~~~~~~------~~~~~~ 161 (230)
T TIGR01467 89 EGRDVAFLTLGDPSLYSTFSYLLQRLQGMGIEVEVV-PGITSFAACASAAGLPLVEGDESLAILPATA------GEAELE 161 (230)
T ss_pred CCCcEEEEeCCCCCcccCHHHHHHHHHHCCCcEEEe-CChhHHHHHHHHhCCCcccCCceEEEEeCCC------CHHHHH
Confidence 46666666632 233445556667777778888764 3322222 3356665442 2222223221 234678
Q ss_pred HHHHCCCcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 103 DFVDSGHDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 103 ~Fid~GGNlLv~~~~~~~~~lr~ll~elGI 132 (433)
+.++.++.+.++.++...+.+...+.+.|.
T Consensus 162 ~~~~~~~~vvil~~~~~~~~i~~~L~~~g~ 191 (230)
T TIGR01467 162 KALAEFDTVVLMKVGRNLPQIKEALAKLGR 191 (230)
T ss_pred HHhccCCeEEEEecCCCHHHHHHHHHHcCC
Confidence 889999998888777666678888888886
No 75
>PRK11249 katE hydroperoxidase II; Provisional
Probab=33.28 E-value=1.8e+02 Score=33.28 Aligned_cols=105 Identities=12% Similarity=0.123 Sum_probs=61.7
Q ss_pred CCCCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCc------cc------ccccccccCEEEEeCCCC--CcC
Q 013932 27 PTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNI------GL------QRYGQYLYDALVLFCPSV--ERF 92 (433)
Q Consensus 27 ~~~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~------~L------~~~ge~~yd~LII~~p~~--~~~ 92 (433)
..+.|+.||+.+-.+........+.|+..|.++.+..++...+ .+ ..-..-.||.|+|..... +.+
T Consensus 595 ~~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L 674 (752)
T PRK11249 595 IKGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADL 674 (752)
T ss_pred ccccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHH
Confidence 3578999999877778888999999999999999876543221 11 111122689999955321 112
Q ss_pred CCCC-CHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCc--eecCC
Q 013932 93 GGSI-DVASIVDFVDSGHDLIVAADSNASDLIREVATECGV--DFDED 137 (433)
Q Consensus 93 ~~~l-s~~~L~~Fid~GGNlLv~~~~~~~~~lr~ll~elGI--~~~p~ 137 (433)
..+- -.+-|.++.+.|. .+-+...+ ..+|.+.|+ +.+++
T Consensus 675 ~~d~~al~fL~eaykHgK-~IAAiCaG-----~~LLaaAGL~~~~~~g 716 (752)
T PRK11249 675 ADNGDARYYLLEAYKHLK-PIALAGDA-----RKLKAALKLPDQGEEG 716 (752)
T ss_pred hhCHHHHHHHHHHHHcCC-EEEEeCcc-----HHHHHhcCCCCCCCCe
Confidence 1100 0123444454444 44333332 257778999 34653
No 76
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=33.08 E-value=91 Score=28.98 Aligned_cols=61 Identities=10% Similarity=0.043 Sum_probs=40.3
Q ss_pred ccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCC-------CHHHHHHHHHCCCcEE
Q 013932 42 KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSI-------DVASIVDFVDSGHDLI 112 (433)
Q Consensus 42 ~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l-------s~~~L~~Fid~GGNlL 112 (433)
...+..|...|+.+|.++.+..+.+. ...+|.|||-... .+...+ -.+.|.+++++|+-||
T Consensus 9 ~gN~~~l~~~~~~~G~~~~~~~~~~~--------~~~~d~lilpGg~--~~~~~~~~~~~~~~~~~i~~~~~~g~pvl 76 (194)
T cd01750 9 ISNFTDLDPLAREPGVDVRYVEVPEG--------LGDADLIILPGSK--DTIQDLAWLRKRGLAEAIKNYARAGGPVL 76 (194)
T ss_pred ccCHHHHHHHHhcCCceEEEEeCCCC--------CCCCCEEEECCCc--chHHHHHHHHHcCHHHHHHHHHHCCCcEE
Confidence 45667899999999999998754433 3456877764332 121111 2367899998888776
No 77
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=32.88 E-value=3.5e+02 Score=28.44 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=73.7
Q ss_pred eEEEEEcCc--ccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCC
Q 013932 31 RVLVLVDDF--AIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG 108 (433)
Q Consensus 31 r~LVl~d~~--~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~G 108 (433)
+++++++.. +...--....+.|.+.|-++...--.+++.+-........+.+||-+|+.- -+..-..+.++-++..=
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~~-~~~~p~i~~~l~~v~~~ 326 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTIN-GGAHPPIQTALGYVLAL 326 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCccc-CCCCchHHHHHHHHHhc
Confidence 789999864 223333468889999999999765555555555666777799999999852 11123567777777643
Q ss_pred C----cEEEEeC----CCCcHHHHHHHHHcCceecCC
Q 013932 109 H----DLIVAAD----SNASDLIREVATECGVDFDED 137 (433)
Q Consensus 109 G----NlLv~~~----~~~~~~lr~ll~elGI~~~p~ 137 (433)
. -+.+.++ ....+.++++++++|.++...
T Consensus 327 ~~~~k~~~vfgS~GW~g~av~~i~~~l~~~g~~~~~~ 363 (388)
T COG0426 327 APKNKLAGVFGSYGWSGEAVDLIEEKLKDLGFEFGFD 363 (388)
T ss_pred cCcCceEEEEeccCCCCcchHHHHHHHHhcCcEEecc
Confidence 2 2445444 234688999999999999986
No 78
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=32.27 E-value=54 Score=30.82 Aligned_cols=65 Identities=18% Similarity=0.353 Sum_probs=35.0
Q ss_pred ceEeCCceEEEEEEEEEeCCeeeeccCCCeEEEEEEeCc----eEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013932 306 IYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSP----YVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 379 (433)
Q Consensus 306 ~Y~i~d~v~y~i~i~e~~~~~W~P~~~~diQlEf~mldP----y~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 379 (433)
.=.++|.|+.+.+|- .+|. |-|--++.--+| ..+..|.+.++-.|.++|+ |++=|.|+|.|.=.+
T Consensus 22 KrvvGe~v~V~Adif--~DGH------D~l~A~l~~r~~~~~~w~~vpM~~~gnDrW~a~f~-~~~~G~~~f~VeAW~ 90 (187)
T PF11896_consen 22 KRVVGEPVPVSADIF--RDGH------DALAAELLWRHPGEREWQEVPMTPLGNDRWEASFT-PDRPGRYEFRVEAWV 90 (187)
T ss_dssp EEETT-EEEEEEEE----SSS------S-EEEEEEEE-TTS-B----B-EESTS-EEEEEEE---SSEEEEEEEEEEE
T ss_pred eeecCCeEEEEEEEE--ecCC------CcEEEEEEEECCCCCcceeeccccCCCCEEEEEEE-CCCceeEEEEEEEEe
Confidence 345667777777763 3331 122222222222 3577888888899999999 899999999997554
No 79
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=32.24 E-value=2.6e+02 Score=27.98 Aligned_cols=96 Identities=18% Similarity=0.303 Sum_probs=56.5
Q ss_pred ccchhhHHHHhhcCCcEEEEecCCC-----CCcccc---ccc---ccc----------cCEEEEeCCCCCcCCCCCCHHH
Q 013932 42 KSSHSLYFGSLTSRGFQLEFKLADD-----PNIGLQ---RYG---QYL----------YDALVLFCPSVERFGGSIDVAS 100 (433)
Q Consensus 42 ~~~~S~F~~~L~~rGf~v~~~~~~d-----~~~~L~---~~g---e~~----------yd~LII~~p~~~~~~~~ls~~~ 100 (433)
+...-.|+++|++-+-++++..-+. ..+... -+| .++ -+.-|++++-++ |.++.+.
T Consensus 117 ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~faSDvq---Gp~~~~~ 193 (304)
T COG2248 117 RRRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVFASDVQ---GPINDEA 193 (304)
T ss_pred HHHHHHHHHHhhhhcceeEecCCceEEeCCEEEEecCCCCCCCcccccceEEEEEEecCCeEEEEccccc---CCCccHH
Confidence 3445569999999988888631110 000000 111 111 156778888776 3367777
Q ss_pred HHHHHHCCCcEEEEeCCCC-------c--------HHHHHHHHHcCceecCCCCeEEEeccC
Q 013932 101 IVDFVDSGHDLIVAADSNA-------S--------DLIREVATECGVDFDEDPAAMVIDHIN 147 (433)
Q Consensus 101 L~~Fid~GGNlLv~~~~~~-------~--------~~lr~ll~elGI~~~p~~~~~VvDhf~ 147 (433)
|.--++.-=+|+|+++|-+ + .+|+.++++.+ .++|+||.-
T Consensus 194 l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~-------~~lViDHHl 248 (304)
T COG2248 194 LEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETN-------ATLVIDHHL 248 (304)
T ss_pred HHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCc-------ceEEEeehh
Confidence 7666677778998877643 1 45555555432 468999863
No 80
>PRK04155 chaperone protein HchA; Provisional
Probab=31.96 E-value=1.7e+02 Score=29.39 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=27.3
Q ss_pred CCeEEEEEcCcccc--------------cchhhHHHHhhcCCcEEEEecCCC
Q 013932 29 DRRVLVLVDDFAIK--------------SSHSLYFGSLTSRGFQLEFKLADD 66 (433)
Q Consensus 29 ~~r~LVl~d~~~~~--------------~~~S~F~~~L~~rGf~v~~~~~~d 66 (433)
++|+|+|+-+.... ...-....-|++.||+|++.+++.
T Consensus 49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G 100 (287)
T PRK04155 49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSG 100 (287)
T ss_pred CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 67999999654221 223356889999999999987754
No 81
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=31.96 E-value=43 Score=36.23 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=26.8
Q ss_pred CCCeEEEEEc--CcccccchhhHHHHhhcCCcEEEEecCC
Q 013932 28 TDRRVLVLVD--DFAIKSSHSLYFGSLTSRGFQLEFKLAD 65 (433)
Q Consensus 28 ~~~r~LVl~d--~~~~~~~~S~F~~~L~~rGf~v~~~~~~ 65 (433)
.+.|+|++.- ..+---....+.+.|.+|||+||...|.
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~ 58 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPT 58 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4567888743 2222344557889999999999998665
No 82
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=31.65 E-value=3.8e+02 Score=27.75 Aligned_cols=106 Identities=9% Similarity=0.175 Sum_probs=63.0
Q ss_pred CCCeEEEEEcCc--ccccchhhHHHHhh--cCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHH
Q 013932 28 TDRRVLVLVDDF--AIKSSHSLYFGSLT--SRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVD 103 (433)
Q Consensus 28 ~~~r~LVl~d~~--~~~~~~S~F~~~L~--~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~ 103 (433)
..++++|+|.+. +.+.-=....+.|+ +.|.+++.....+.+.+-.......+|.||+-+|+.. ++.+ ..+.+
T Consensus 246 ~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~i~~~~~~~d~ii~GspT~~--~~~~--~~~~~ 321 (394)
T PRK11921 246 QENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKNDIITEVFKSKAILVGSSTIN--RGIL--SSTAA 321 (394)
T ss_pred CcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHHHHHHHHHhCCEEEEECCCcC--cccc--HHHHH
Confidence 468899999875 22333334667787 7788888655555433221222345799999999853 1212 22444
Q ss_pred HHHC------CCcEE-EEeCCC----CcHHHHHHHHHcCceecCC
Q 013932 104 FVDS------GHDLI-VAADSN----ASDLIREVATECGVDFDED 137 (433)
Q Consensus 104 Fid~------GGNlL-v~~~~~----~~~~lr~ll~elGI~~~p~ 137 (433)
|++. .|... +.++-+ ..+.+...++++|+..-.+
T Consensus 322 ~l~~l~~~~~~~K~~a~FGsygw~g~a~~~~~~~l~~~g~~~v~~ 366 (394)
T PRK11921 322 ILEEIKGLGFKNKKAAAFGSYGWSGESVKIITERLKKAGFEIVND 366 (394)
T ss_pred HHHHhhccCcCCCEEEEEecCCCccHHHHHHHHHHHHCCCEEccC
Confidence 4332 24444 444432 2466778888899998764
No 83
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=31.35 E-value=1.9e+02 Score=27.13 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=57.4
Q ss_pred CCeEEEEEcC-cccccchhhHHHHhhcCCcEEEEecCCCCCcc--ccccccccc-----CEEEEeCCCCCcCCCCCCHHH
Q 013932 29 DRRVLVLVDD-FAIKSSHSLYFGSLTSRGFQLEFKLADDPNIG--LQRYGQYLY-----DALVLFCPSVERFGGSIDVAS 100 (433)
Q Consensus 29 ~~r~LVl~d~-~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~--L~~~ge~~y-----d~LII~~p~~~~~~~~ls~~~ 100 (433)
|+++.+|.-+ +..-..++...+.++++|.+++.. |.=+++. ...-|.+.+ +.+++........ . -..+.
T Consensus 71 g~~V~~L~~GDP~~~~~~~~l~~~~~~~g~~vevi-PGiSS~~aa~a~~g~~l~~~~~~~~~~~~~~~g~~~-~-~~~~~ 147 (229)
T TIGR01465 71 GKLVVRLHTGDPSIYGAIAEQMQLLEALGIPYEVV-PGVSSFFAAAAALGAELTVPEVSQTVILTRAEGRTP-M-PEGEK 147 (229)
T ss_pred CCeEEEEeCcCccccccHHHHHHHHHHCCCCEEEE-CChhHHHHHHHHcCCCccccCCccEEEEEeccCCCC-C-CChHH
Confidence 5555555521 223344555557788889888764 3322222 345666653 3444433222111 0 13356
Q ss_pred HHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCce
Q 013932 101 IVDFVDSGHDLIVAADSNASDLIREVATECGVD 133 (433)
Q Consensus 101 L~~Fid~GGNlLv~~~~~~~~~lr~ll~elGI~ 133 (433)
|.+.++.++.+.+..++.....+...+.+.|+.
T Consensus 148 l~~~~~~~~~~vi~~~~~~~~~i~~~L~~~g~~ 180 (229)
T TIGR01465 148 LADLAKHGATMAIFLSAHILDKVVKELIEGGYS 180 (229)
T ss_pred HHHHhcCCCeEEEECcHHHHHHHHHHHHHcCcC
Confidence 888887777877776666667777777788874
No 84
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=31.19 E-value=78 Score=29.23 Aligned_cols=50 Identities=6% Similarity=0.179 Sum_probs=32.4
Q ss_pred eEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCC
Q 013932 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCP 87 (433)
Q Consensus 31 r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p 87 (433)
|+| ++|+. +..+|. ..+.|+.+|.++....+++.+.. ....||.|||.+.
T Consensus 3 ~il-iid~~-dsf~~~-i~~~l~~~g~~~~v~~~~~~~~~----~l~~~d~iIi~gG 52 (190)
T PRK06895 3 KLL-IINNH-DSFTFN-LVDLIRKLGVPMQVVNVEDLDLD----EVENFSHILISPG 52 (190)
T ss_pred EEE-EEeCC-CchHHH-HHHHHHHcCCcEEEEECCccChh----HhccCCEEEECCC
Confidence 444 45553 456666 88999999999998765543211 1235799888754
No 85
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.05 E-value=2.1e+02 Score=27.13 Aligned_cols=100 Identities=11% Similarity=0.072 Sum_probs=65.5
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCC-cccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPN-IGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~-~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~ 107 (433)
..+++.++.... .+.--.-.+.|.+-|+.+-+.+-+.+. +...+.--..|+.++|-+-++ ++.++..+.++.
T Consensus 3 ~~~vv~Vir~~~-~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTV------l~~e~a~~ai~a 75 (201)
T PRK06015 3 LQPVIPVLLIDD-VEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTI------LNAKQFEDAAKA 75 (201)
T ss_pred CCCEEEEEEcCC-HHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeC------cCHHHHHHHHHc
Confidence 457777775432 223335667888888765544333322 222222222344566655443 488999999999
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHcCceecCC
Q 013932 108 GHDLIVAADSNASDLIREVATECGVDFDED 137 (433)
Q Consensus 108 GGNlLv~~~~~~~~~lr~ll~elGI~~~p~ 137 (433)
|.+.++ +|...+.+-..++++||-..|+
T Consensus 76 GA~Fiv--SP~~~~~vi~~a~~~~i~~iPG 103 (201)
T PRK06015 76 GSRFIV--SPGTTQELLAAANDSDVPLLPG 103 (201)
T ss_pred CCCEEE--CCCCCHHHHHHHHHcCCCEeCC
Confidence 999874 5777788889999999999997
No 86
>PF15020 CATSPERD: Cation channel sperm-associated protein subunit delta
Probab=31.03 E-value=94 Score=35.14 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=42.1
Q ss_pred EEecCCceeeeEEEEeeeeccceeeeeeeeEeecCCCCCcccccccCCcchhhHHHHHHHHHhhhee
Q 013932 361 EFKVPDVYGVFQFKVEYQRLGYTSLSLSKQIPVRPYRHNEYERFLPAAYPYYGSAFSMMAGFFIFTI 427 (433)
Q Consensus 361 ~f~~PD~hGvf~f~v~Y~R~G~t~l~~~~~v~VR~~~hdey~Rfi~~a~pyy~s~~s~~~g~~~F~~ 427 (433)
...-|++-|+|.|+|.---|-|||-+.+++.+|+- |-.+||. ..+|..+-.+ ++..++|++
T Consensus 643 ~ii~~~~~g~YvF~~~ivDP~YSyC~L~t~Fai~v--~G~~P~~--~~~~~~~~l~--~~~~~~~si 703 (733)
T PF15020_consen 643 HIIWPQRNGIYVFRVKIVDPYYSYCNLTTIFAIYV--YGAIPRP--SVYPVATILL--LLMLIFFSI 703 (733)
T ss_pred eEEcCCCCeEEEEEEEEeCCCCCccceEEEEEEEE--eccCCcc--ccchHHHHHH--HHHHHHHHH
Confidence 45566999999999999999999999999999974 3344442 3344443333 333444443
No 87
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=30.98 E-value=51 Score=26.09 Aligned_cols=28 Identities=11% Similarity=0.256 Sum_probs=19.4
Q ss_pred ccccCCCceEEEEEecCCceeeeEEEEe
Q 013932 349 TLSTDQKGHYSAEFKVPDVYGVFQFKVE 376 (433)
Q Consensus 349 ~l~~~~~~~y~~~f~~PD~hGvf~f~v~ 376 (433)
.|++.++|.|+++..+|.--=-|+|.||
T Consensus 29 ~m~~~~~G~w~~~~~l~~G~y~Ykf~vd 56 (82)
T cd02861 29 PMEREGDGLWVVTVELRPGRYEYKFVVD 56 (82)
T ss_pred cCEECCCCcEEEEEeCCCCcEEEEEEEC
Confidence 4555667999999988762114888876
No 88
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=30.73 E-value=4e+02 Score=23.96 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=47.1
Q ss_pred hHHHHhhcCCcEEEEecCCCCCcc-cc------------cccccccCEEEEeCCCCCcCCCCCCH--HHHHHHHHC---C
Q 013932 47 LYFGSLTSRGFQLEFKLADDPNIG-LQ------------RYGQYLYDALVLFCPSVERFGGSIDV--ASIVDFVDS---G 108 (433)
Q Consensus 47 ~F~~~L~~rGf~v~~~~~~d~~~~-L~------------~~ge~~yd~LII~~p~~~~~~~~ls~--~~L~~Fid~---G 108 (433)
.+.+.|++.|.+++.....|-.+. +. .......|.+|+.+|--- ++++. |.++|++.. .
T Consensus 21 ~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y~---~sip~~LK~~iD~~~~~~l~ 97 (171)
T TIGR03567 21 HVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVYK---ASYSGVLKALLDLLPQRALR 97 (171)
T ss_pred HHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCccc---CCCCHHHHHHHHhCChhhhC
Confidence 356677777887775433321111 00 111225599999999654 32333 555555432 1
Q ss_pred Cc-EEEEeCCCC-c------HHHHHHHHHcCceecCC
Q 013932 109 HD-LIVAADSNA-S------DLIREVATECGVDFDED 137 (433)
Q Consensus 109 GN-lLv~~~~~~-~------~~lr~ll~elGI~~~p~ 137 (433)
|. +.+.+..+. . ..+|.++..+|+...+.
T Consensus 98 ~K~v~~~~~gg~~~~~~~~~~~l~~~l~~l~~~~~~~ 134 (171)
T TIGR03567 98 GKVVLPIATGGSIAHLLAIDYALKPVLSALGARHILP 134 (171)
T ss_pred CCEEEEEEcCCchhHHHHHHHHHHHHHHHcCCccccc
Confidence 33 333322222 1 36899999999965554
No 89
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=30.72 E-value=68 Score=26.05 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=27.7
Q ss_pred ccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCC
Q 013932 42 KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVE 90 (433)
Q Consensus 42 ~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~ 90 (433)
.+..|...+.|+++||+|....-.+ +-..+|.+|+-.-...
T Consensus 7 E~~Ls~v~~~L~~~GyeVv~l~~~~--------~~~~~daiVvtG~~~n 47 (80)
T PF03698_consen 7 EEGLSNVKEALREKGYEVVDLENEQ--------DLQNVDAIVVTGQDTN 47 (80)
T ss_pred cCCchHHHHHHHHCCCEEEecCCcc--------ccCCcCEEEEECCCcc
Confidence 4567789999999999998542111 1345689888655443
No 90
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=30.70 E-value=2.3e+02 Score=27.88 Aligned_cols=63 Identities=11% Similarity=0.051 Sum_probs=37.9
Q ss_pred ccCCCCCCeEEEEEcCcccccchhhHHHHhhcCCcEEEEe------cCCCCCcccccccccccCEEEEeCCCC
Q 013932 23 SPENPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFK------LADDPNIGLQRYGQYLYDALVLFCPSV 89 (433)
Q Consensus 23 ~~~s~~~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~------~~~d~~~~L~~~ge~~yd~LII~~p~~ 89 (433)
++.+.+|.|+||-=.. +.-+.+.+.|++.|.++-.. .+++..+.-.-..-..||.||+-++..
T Consensus 12 ~~~~l~g~~IlvTRp~----~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NA 80 (266)
T PRK08811 12 AATADAAWTLISLRPS----GEHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAA 80 (266)
T ss_pred CCcCCCCCEEEEeCCH----HHHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHH
Confidence 3567788988775432 33467999999999998752 122221110001123678888877754
No 91
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=30.57 E-value=1.1e+02 Score=32.44 Aligned_cols=75 Identities=23% Similarity=0.115 Sum_probs=50.7
Q ss_pred CeEEEEEcCcccccchhhHHHHhhcCCcEEEEecC-CCCCcccccccccccCEEEEeCCCCC----cCCC-CCCHHHHHH
Q 013932 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLA-DDPNIGLQRYGQYLYDALVLFCPSVE----RFGG-SIDVASIVD 103 (433)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~-~d~~~~L~~~ge~~yd~LII~~p~~~----~~~~-~ls~~~L~~ 103 (433)
-|+-|..|. .....|..-++.|++.|.++.+..| +|+. .+.||.|||=..... .+.. ..-.+.|.+
T Consensus 246 ~~iava~d~-af~f~y~e~~~~L~~~g~~~~~~~~~~~~~-------l~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~ 317 (451)
T PRK01077 246 VRIAVARDA-AFNFYYPENLELLRAAGAELVFFSPLADEA-------LPDCDGLYLGGGYPELFAAELAANTSMRASIRA 317 (451)
T ss_pred ceEEEEecC-cccccHHHHHHHHHHCCCEEEEeCCcCCCC-------CCCCCEEEeCCCchhhHHHHHhhCchhHHHHHH
Confidence 377777777 7788888889999999999998766 3331 235687777444311 1111 112388999
Q ss_pred HHHCCCcEE
Q 013932 104 FVDSGHDLI 112 (433)
Q Consensus 104 Fid~GGNlL 112 (433)
|+++|+-|+
T Consensus 318 ~~~~g~~i~ 326 (451)
T PRK01077 318 AAAAGKPIY 326 (451)
T ss_pred HHHcCCCEE
Confidence 999998666
No 92
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=30.55 E-value=2.1e+02 Score=26.11 Aligned_cols=36 Identities=11% Similarity=0.054 Sum_probs=29.8
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecC
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLA 64 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~ 64 (433)
.+|++|++.+.-+..+.....+-|+..|+++++..+
T Consensus 2 ~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~ 37 (196)
T PRK11574 2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASV 37 (196)
T ss_pred CceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEc
Confidence 368999997777777888899999999999998554
No 93
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=30.36 E-value=1.4e+02 Score=31.40 Aligned_cols=92 Identities=16% Similarity=0.102 Sum_probs=63.1
Q ss_pred CCCCCCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHH
Q 013932 25 ENPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDF 104 (433)
Q Consensus 25 ~s~~~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~F 104 (433)
.-..|+++|+.=| ..-.+|.-|-..|++-|.++++..+.+..-.+..--+++.+.+.|=+|+...+ .-.+...|.+-
T Consensus 98 ll~~GD~vl~~~~--~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l-~v~DI~~i~~~ 174 (396)
T COG0626 98 LLKAGDHVLLPDD--LYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLL-EVPDIPAIARL 174 (396)
T ss_pred hcCCCCEEEecCC--ccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCccc-ccccHHHHHHH
Confidence 3344787776655 34566767777888889999987665542222222225778888888988755 55677999998
Q ss_pred HHCCCcEEEEeCCCCc
Q 013932 105 VDSGHDLIVAADSNAS 120 (433)
Q Consensus 105 id~GGNlLv~~~~~~~ 120 (433)
.++-| ++++.|.+-.
T Consensus 175 A~~~g-~~vvVDNTfa 189 (396)
T COG0626 175 AKAYG-ALVVVDNTFA 189 (396)
T ss_pred HHhcC-CEEEEECCcc
Confidence 88878 8888887653
No 94
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=30.30 E-value=3e+02 Score=28.21 Aligned_cols=41 Identities=5% Similarity=0.144 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHCCC-cEEEEeCC-CCcHHHHHHHHHcCceecC
Q 013932 96 IDVASIVDFVDSGH-DLIVAADS-NASDLIREVATECGVDFDE 136 (433)
Q Consensus 96 ls~~~L~~Fid~GG-NlLv~~~~-~~~~~lr~ll~elGI~~~p 136 (433)
.+...+.++++-+- +|+|.++| ..+++...-++.+||...-
T Consensus 63 ynes~~~eI~~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~R 105 (337)
T COG2247 63 YNESVLDEIIELNPDLVLIIGGPIAVSPNYENALKSLGITVKR 105 (337)
T ss_pred ccHHHHHHHHhhCCceEEEECCCCcCChhHHHHHHhCCcEEEE
Confidence 56677777777664 45566655 3466677777777775544
No 95
>PF11869 DUF3389: Protein of unknown function (DUF3389); InterPro: IPR021811 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=29.83 E-value=57 Score=26.17 Aligned_cols=31 Identities=23% Similarity=0.579 Sum_probs=23.5
Q ss_pred HHHHCCCcEEEEeCCC--------CcHHHHHHHHHcCcee
Q 013932 103 DFVDSGHDLIVAADSN--------ASDLIREVATECGVDF 134 (433)
Q Consensus 103 ~Fid~GGNlLv~~~~~--------~~~~lr~ll~elGI~~ 134 (433)
.++. |.|++++-+.. ..+.++.+++|+||..
T Consensus 36 ~li~-~anvi~A~g~~vkWSikLD~eeQL~~ia~~lGi~i 74 (75)
T PF11869_consen 36 TLIG-GANVIIANGGEVKWSIKLDNEEQLQAIAEELGIDI 74 (75)
T ss_pred hhcC-CCcEEEEeCcceEEEEEcCCHHHHHHHHHHhCccc
Confidence 3454 88888876553 3578999999999974
No 96
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=28.82 E-value=1.2e+02 Score=23.74 Aligned_cols=52 Identities=15% Similarity=0.415 Sum_probs=33.6
Q ss_pred eeeccCCCeEEEEEEeC--ceEeeccc-cCCCceEEEEEecCCce-e-eeEEEEeeee
Q 013932 327 WEPYVSDDVQVQFYMMS--PYVLKTLS-TDQKGHYSAEFKVPDVY-G-VFQFKVEYQR 379 (433)
Q Consensus 327 W~P~~~~diQlEf~mld--Py~R~~l~-~~~~~~y~~~f~~PD~h-G-vf~f~v~Y~R 379 (433)
|.|- |+.|.|-..--+ |..+..|+ ..+.|.++++..-.=.+ + -|+|+|+...
T Consensus 18 waP~-A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 18 WAPN-AKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp E-TT-ESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred ECCC-CCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 5553 456666555544 45666777 57899999988742233 3 7899998765
No 97
>PRK00170 azoreductase; Reviewed
Probab=27.99 E-value=3.6e+02 Score=24.56 Aligned_cols=102 Identities=12% Similarity=0.150 Sum_probs=57.2
Q ss_pred eEEEEEcCcccc-----cchhhHHHHhhcC--CcEEEEecCCCCCccccc-----------------------------c
Q 013932 31 RVLVLVDDFAIK-----SSHSLYFGSLTSR--GFQLEFKLADDPNIGLQR-----------------------------Y 74 (433)
Q Consensus 31 r~LVl~d~~~~~-----~~~S~F~~~L~~r--Gf~v~~~~~~d~~~~L~~-----------------------------~ 74 (433)
|+|+|.=++... ..-..|.+.|+++ |.+++.....+..+.... .
T Consensus 3 kil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 82 (201)
T PRK00170 3 KVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDELLE 82 (201)
T ss_pred eEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHH
Confidence 677777544221 1222578889988 999988755444332110 0
Q ss_pred cccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC-------------------CC-cEEEEeCCC----------CcHHHH
Q 013932 75 GQYLYDALVLFCPSVERFGGSIDVASIVDFVDS-------------------GH-DLIVAADSN----------ASDLIR 124 (433)
Q Consensus 75 ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~-------------------GG-NlLv~~~~~----------~~~~lr 124 (433)
....-|.|||..|--- ++ + +..|+.|+|. .| .+++++..+ ....++
T Consensus 83 ~i~~AD~iV~~sP~y~-~~--~-pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~ 158 (201)
T PRK00170 83 EFLAADKIVIAAPMYN-FS--I-PTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLK 158 (201)
T ss_pred HHHHCCEEEEeecccc-cC--C-cHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHH
Confidence 1223499999999654 21 2 3455555554 22 344333211 135677
Q ss_pred HHHHHcCceecC
Q 013932 125 EVATECGVDFDE 136 (433)
Q Consensus 125 ~ll~elGI~~~p 136 (433)
.++.-+|+...+
T Consensus 159 ~~~~~~G~~~~~ 170 (201)
T PRK00170 159 TFLGFIGITDVE 170 (201)
T ss_pred HHHHhcCCCceE
Confidence 888888988655
No 98
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=27.73 E-value=89 Score=29.08 Aligned_cols=90 Identities=17% Similarity=0.102 Sum_probs=48.5
Q ss_pred eEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcC---CCC-CCHHHHHHHHH
Q 013932 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERF---GGS-IDVASIVDFVD 106 (433)
Q Consensus 31 r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~---~~~-ls~~~L~~Fid 106 (433)
|+.||.=.....+.-..+.+.|+.+|++++....++. .+| ..||.|||-....... ... --.+.|+++++
T Consensus 2 ~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~-~~l-----~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~ 75 (200)
T PRK13527 2 KIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRP-GDL-----PDCDALIIPGGESTTIGRLMKREGILDEIKEKIE 75 (200)
T ss_pred EEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCCh-HHh-----ccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHH
Confidence 3444443333333334577788899998887655442 122 3579888866432210 000 01477888888
Q ss_pred CCCcEEEEeCCCCcHHHHHHHHHcC
Q 013932 107 SGHDLIVAADSNASDLIREVATECG 131 (433)
Q Consensus 107 ~GGNlLv~~~~~~~~~lr~ll~elG 131 (433)
+|.-+| .. --...-++..+|
T Consensus 76 ~~~pil-GI----C~G~Qll~~~~g 95 (200)
T PRK13527 76 EGLPIL-GT----CAGLILLAKEVG 95 (200)
T ss_pred CCCeEE-EE----CHHHHHHHhhhc
Confidence 877555 21 123445555554
No 99
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=27.45 E-value=1.7e+02 Score=27.90 Aligned_cols=97 Identities=10% Similarity=0.137 Sum_probs=59.3
Q ss_pred eEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCccccccc--ccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCC
Q 013932 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYG--QYLYDALVLFCPSVERFGGSIDVASIVDFVDSG 108 (433)
Q Consensus 31 r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~g--e~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~G 108 (433)
|+.+|.|.... +.-.+.+.|+++|+++....++|..+.+.... ...+|.++.-. .. . .....+.+.++.-
T Consensus 1 ~~~~~~~~~~~--~~~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~--~~-~---~~~~~~~~~l~~~ 72 (277)
T TIGR00768 1 KLAILYDRIRL--DEKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRI--VS-M---FRGLAVARYLESL 72 (277)
T ss_pred CEEEEEcCCCH--HHHHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEec--hh-H---hhHHHHHHHHHHC
Confidence 35667776433 56679999999999999888877655543211 33468766654 11 1 1234667777766
Q ss_pred CcEEEEeCCC-----Cc-HHHHHHHHHcCceecC
Q 013932 109 HDLIVAADSN-----AS-DLIREVATECGVDFDE 136 (433)
Q Consensus 109 GNlLv~~~~~-----~~-~~lr~ll~elGI~~~p 136 (433)
|-- +..++. .. .....++++.||...+
T Consensus 73 g~~-~~~~~~~~~~~~dK~~~~~~l~~~gi~~P~ 105 (277)
T TIGR00768 73 GVP-VINSSDAILNAGDKFLTSQLLAKAGLPQPR 105 (277)
T ss_pred CCe-eeCCHHHHHHHhhHHHHHHHHHHCCCCCCC
Confidence 633 333331 11 2457889999997644
No 100
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=27.34 E-value=1.8e+02 Score=26.81 Aligned_cols=94 Identities=10% Similarity=0.045 Sum_probs=52.1
Q ss_pred EEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEE
Q 013932 33 LVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLI 112 (433)
Q Consensus 33 LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GGNlL 112 (433)
+.++|+. +..+| ...+.|+++|.++.....++.+ +.+.....||.|||.+-....- ..-....+.+.++++--+|
T Consensus 2 il~idn~-Dsft~-nl~~~l~~~g~~v~v~~~~~~~--~~~~~~~~~d~iils~GPg~p~-~~~~~~~~~~~~~~~~PiL 76 (187)
T PRK08007 2 ILLIDNY-DSFTW-NLYQYFCELGADVLVKRNDALT--LADIDALKPQKIVISPGPCTPD-EAGISLDVIRHYAGRLPIL 76 (187)
T ss_pred EEEEECC-CccHH-HHHHHHHHCCCcEEEEeCCCCC--HHHHHhcCCCEEEEcCCCCChH-HCCccHHHHHHhcCCCCEE
Confidence 4566774 23333 3777889999999886554332 3322234678888876543211 1112234444455443444
Q ss_pred EEeCCCCcHHHHHHHHHcCceecC
Q 013932 113 VAADSNASDLIREVATECGVDFDE 136 (433)
Q Consensus 113 v~~~~~~~~~lr~ll~elGI~~~p 136 (433)
+ +=-+.+.++..+|=.+..
T Consensus 77 --G---IClG~Q~la~a~Gg~v~~ 95 (187)
T PRK08007 77 --G---VCLGHQAMAQAFGGKVVR 95 (187)
T ss_pred --E---ECHHHHHHHHHcCCEEEe
Confidence 1 123567788888866654
No 101
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=27.13 E-value=1.4e+02 Score=27.61 Aligned_cols=67 Identities=10% Similarity=0.150 Sum_probs=43.8
Q ss_pred HhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCC--cEEEEeCCC------CcHH
Q 013932 51 SLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGH--DLIVAADSN------ASDL 122 (433)
Q Consensus 51 ~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GG--NlLv~~~~~------~~~~ 122 (433)
.|+++|+..-...-|++ |.+|..+.+.+. -.+.+.+.-+.|| +|+|.+++. ....
T Consensus 35 ~Lk~~Gik~li~DkDNT----------------L~~~~~~~i~~~-~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~ 97 (168)
T PF09419_consen 35 HLKKKGIKALIFDKDNT----------------LTPPYEDEIPPE-YAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGER 97 (168)
T ss_pred hhhhcCceEEEEcCCCC----------------CCCCCcCcCCHH-HHHHHHHHHHHCCCCeEEEEECCCCcccCccHHH
Confidence 38999998766544444 445655545331 1144566666776 599988763 3467
Q ss_pred HHHHHHHcCcee
Q 013932 123 IREVATECGVDF 134 (433)
Q Consensus 123 lr~ll~elGI~~ 134 (433)
.+.+.+.+||.+
T Consensus 98 a~~~~~~lgIpv 109 (168)
T PF09419_consen 98 AEALEKALGIPV 109 (168)
T ss_pred HHHHHHhhCCcE
Confidence 889999999874
No 102
>CHL00101 trpG anthranilate synthase component 2
Probab=26.98 E-value=1.5e+02 Score=27.30 Aligned_cols=93 Identities=9% Similarity=-0.012 Sum_probs=53.9
Q ss_pred EEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEE
Q 013932 33 LVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLI 112 (433)
Q Consensus 33 LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GGNlL 112 (433)
+.++|+. +..+| ...+.|+++|.++.....+.. .+.+.....+|.|||.+.... ....-....+.+.++++--+|
T Consensus 2 iliid~~-dsft~-~l~~~l~~~g~~~~v~~~~~~--~~~~~~~~~~dgiiisgGpg~-~~~~~~~~~i~~~~~~~~PiL 76 (190)
T CHL00101 2 ILIIDNY-DSFTY-NLVQSLGELNSDVLVCRNDEI--DLSKIKNLNIRHIIISPGPGH-PRDSGISLDVISSYAPYIPIL 76 (190)
T ss_pred EEEEECC-CchHH-HHHHHHHhcCCCEEEEECCCC--CHHHHhhCCCCEEEECCCCCC-hHHCcchHHHHHHhcCCCcEE
Confidence 3455654 22232 267788999999986544433 222222345788887766532 211123466777787776666
Q ss_pred -EEeCCCCcHHHHHHHHHcCceecC
Q 013932 113 -VAADSNASDLIREVATECGVDFDE 136 (433)
Q Consensus 113 -v~~~~~~~~~lr~ll~elGI~~~p 136 (433)
|- -+.+.++..+|-++.+
T Consensus 77 GIC------lG~Qlla~~~Gg~V~~ 95 (190)
T CHL00101 77 GVC------LGHQSIGYLFGGKIIK 95 (190)
T ss_pred EEc------hhHHHHHHHhCCEEEE
Confidence 33 2456677777766655
No 103
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=26.92 E-value=1.4e+02 Score=24.98 Aligned_cols=83 Identities=16% Similarity=0.120 Sum_probs=46.2
Q ss_pred hHHHHhhcCCcEEEEecCCCCCccc-ccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCC--cEE-EEeCCCCcHH
Q 013932 47 LYFGSLTSRGFQLEFKLADDPNIGL-QRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGH--DLI-VAADSNASDL 122 (433)
Q Consensus 47 ~F~~~L~~rGf~v~~~~~~d~~~~L-~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GG--NlL-v~~~~~~~~~ 122 (433)
-+...|+..||++.+..++-+.-.+ ..-.+...|.+.|.......+ ...+.+.+-+.+-+ ++. ++++.....
T Consensus 18 ~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~---~~~~~~i~~l~~~~~~~~~i~vGG~~~~~- 93 (119)
T cd02067 18 IVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHM---TLMKEVIEELKEAGLDDIPVLVGGAIVTR- 93 (119)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccH---HHHHHHHHHHHHcCCCCCeEEEECCCCCh-
Confidence 4667888999999876544322123 233455668777755534433 23344444444433 554 444444332
Q ss_pred HHHHHHHcCce
Q 013932 123 IREVATECGVD 133 (433)
Q Consensus 123 lr~ll~elGI~ 133 (433)
--..+++.|++
T Consensus 94 ~~~~~~~~G~D 104 (119)
T cd02067 94 DFKFLKEIGVD 104 (119)
T ss_pred hHHHHHHcCCe
Confidence 22578999876
No 104
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=26.92 E-value=3.6e+02 Score=25.92 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=27.7
Q ss_pred HHhhhhccccccCCCCCCeEEEEEcCccc---ccchhhHHHHhhcCCcEEEEe
Q 013932 13 SLIPLFSVAFSPENPTDRRVLVLVDDFAI---KSSHSLYFGSLTSRGFQLEFK 62 (433)
Q Consensus 13 ~~~~~~~~~~~~~s~~~~r~LVl~d~~~~---~~~~S~F~~~L~~rGf~v~~~ 62 (433)
|++++-|++ .+.+-+.+.+.|++.+... .+....+-+.++++||++...
T Consensus 11 ~~~~~~~~~-~~~~~~~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~~~~ 62 (295)
T PRK10653 11 SAVALSATV-SANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 62 (295)
T ss_pred HHHHHHHhc-CCccccCCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeEEEe
Confidence 455555544 4444455666667654321 233334556667889988764
No 105
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.92 E-value=85 Score=28.04 Aligned_cols=49 Identities=16% Similarity=0.138 Sum_probs=31.6
Q ss_pred HhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcE
Q 013932 51 SLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDL 111 (433)
Q Consensus 51 ~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GGNl 111 (433)
.+++.|+++....+-+. -|.+|++..-.- ..-..+++..+++++.+||=
T Consensus 69 ~~~d~G~ql~e~e~~n~-----------aDvvVLlGGLaM-P~~gv~~d~~kel~ee~~~k 117 (154)
T COG4090 69 ELTDHGYQLGEREELNS-----------ADVVVLLGGLAM-PKIGVTPDDAKELLEELGNK 117 (154)
T ss_pred eeeccceecCCcccccc-----------ccEEEEEccccc-CcCCCCHHHHHHHHHhcCCC
Confidence 45566777755432221 288998876432 11237899999999988875
No 106
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=26.85 E-value=1.9e+02 Score=29.64 Aligned_cols=70 Identities=11% Similarity=0.180 Sum_probs=41.4
Q ss_pred CCCCCcccccccccccCEEEEeCCCCC-cCC--C-C----C------CHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHH
Q 013932 64 ADDPNIGLQRYGQYLYDALVLFCPSVE-RFG--G-S----I------DVASIVDFVDSGHDLIVAADSNASDLIREVATE 129 (433)
Q Consensus 64 ~~d~~~~L~~~ge~~yd~LII~~p~~~-~~~--~-~----l------s~~~L~~Fid~GGNlLv~~~~~~~~~lr~ll~e 129 (433)
+++..+.+....+..||.|||+.-... .++ + . . +.+.|.+.+..|.+++|.++....=.+-..+.+
T Consensus 86 ~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~ 165 (396)
T PRK09754 86 RDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQ 165 (396)
T ss_pred CCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHH
Confidence 333333444444578899999887653 221 1 0 1 114466667788899988776554445566666
Q ss_pred cCce
Q 013932 130 CGVD 133 (433)
Q Consensus 130 lGI~ 133 (433)
.|.+
T Consensus 166 ~g~~ 169 (396)
T PRK09754 166 RRCK 169 (396)
T ss_pred cCCe
Confidence 6653
No 107
>COG3470 Tpd Uncharacterized protein probably involved in high-affinity Fe2+ transport [Inorganic ion transport and metabolism]
Probab=26.48 E-value=89 Score=28.70 Aligned_cols=22 Identities=27% Similarity=0.726 Sum_probs=15.3
Q ss_pred CCceEEEEEEEEEeC-------Ceeeecc
Q 013932 310 NDDLEYSVEIYEWSG-------TSWEPYV 331 (433)
Q Consensus 310 ~d~v~y~i~i~e~~~-------~~W~P~~ 331 (433)
+-|++-+.+|.-..+ |.|+||-
T Consensus 64 ~aDiHlEADIha~~~n~nGfg~Gew~pYL 92 (179)
T COG3470 64 EADIHLEADIHALKGNKNGFGEGEWVPYL 92 (179)
T ss_pred hccceeeeehhccccCCCCcCcccccceE
Confidence 456777777776633 5788884
No 108
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=26.25 E-value=44 Score=30.73 Aligned_cols=52 Identities=19% Similarity=0.237 Sum_probs=32.0
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEE
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDAL 82 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~L 82 (433)
.+|.|.++|+.. .-.-++..+|+.|||+++...--.+-+.+.+...|.|-.+
T Consensus 8 pd~~lllvdDD~--~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvv 59 (182)
T COG4567 8 PDKSLLLVDDDT--PFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVV 59 (182)
T ss_pred CCceeEEecCCh--HHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCCceEEE
Confidence 456788887642 2233677899999999997532223344455556666433
No 109
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=26.20 E-value=3.6e+02 Score=26.32 Aligned_cols=84 Identities=8% Similarity=0.024 Sum_probs=50.5
Q ss_pred hhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeCC-------C
Q 013932 46 SLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADS-------N 118 (433)
Q Consensus 46 S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GGNlLv~~~~-------~ 118 (433)
-.+.+.|+++|+++....+++..+.+.+ ...+|.+++.....- + ....+..+++.=| +-+.+.+ .
T Consensus 26 ~~i~~al~~~g~~v~~i~~~~~~~~~~~--~~~~D~v~~~~~g~~--~---~~~~~~~~le~~g-i~~~g~~~~~~~~~~ 97 (304)
T PRK01372 26 AAVLAALREAGYDAHPIDPGEDIAAQLK--ELGFDRVFNALHGRG--G---EDGTIQGLLELLG-IPYTGSGVLASALAM 97 (304)
T ss_pred HHHHHHHHHCCCEEEEEecCcchHHHhc--cCCCCEEEEecCCCC--C---CccHHHHHHHHcC-CCccCCCHHHHHHHh
Confidence 4799999999999988766665444332 235687777643221 1 1123444555444 3333322 1
Q ss_pred CcHHHHHHHHHcCceecCC
Q 013932 119 ASDLIREVATECGVDFDED 137 (433)
Q Consensus 119 ~~~~lr~ll~elGI~~~p~ 137 (433)
.-...+.++.++||...+.
T Consensus 98 dK~~~k~~l~~~gIp~p~~ 116 (304)
T PRK01372 98 DKLRTKLVWQAAGLPTPPW 116 (304)
T ss_pred CHHHHHHHHHHCCCCCCCE
Confidence 1245678999999998874
No 110
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=25.89 E-value=1.4e+02 Score=28.67 Aligned_cols=89 Identities=18% Similarity=0.156 Sum_probs=57.7
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcCCcEEEEe-cCCCCCcccc------cccccccCEEEEeCCCCCcCCCCCCHHHH
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFK-LADDPNIGLQ------RYGQYLYDALVLFCPSVERFGGSIDVASI 101 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~-~~~d~~~~L~------~~ge~~yd~LII~~p~~~~~~~~ls~~~L 101 (433)
++|+|++..+.+. ..+.+.|.++|.++... .++.....+. .......|.+++.++. .++.+
T Consensus 123 ~~~vl~~~~~~~r----~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~--------~v~~~ 190 (248)
T COG1587 123 GKRVLILRGNGGR----EVLEEKLEERGAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVFTSSS--------AVRAL 190 (248)
T ss_pred CCeEEEEcCCCch----HHHHHHHHhCCCEEEEEeeeeecCCCccHHHHHHHHHhCCCCEEEEeCHH--------HHHHH
Confidence 7899999877544 47999999999999863 2222211111 3344556888886662 56777
Q ss_pred HHHHHCCCc------EEEEeCCCCcHHHHHHHHHcCce
Q 013932 102 VDFVDSGHD------LIVAADSNASDLIREVATECGVD 133 (433)
Q Consensus 102 ~~Fid~GGN------lLv~~~~~~~~~lr~ll~elGI~ 133 (433)
.++++.-+. .++.- ++.....+.++|+.
T Consensus 191 ~~~~~~~~~~~~~~~~v~~I----G~~Ta~~l~~~G~~ 224 (248)
T COG1587 191 LALAPESGIEFLERKRVASI----GPRTAETLKELGIT 224 (248)
T ss_pred HHHccccchhHhhCceEEEe----cHHHHHHHHHcCCc
Confidence 888877774 33333 34455777888875
No 111
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=25.35 E-value=3.3e+02 Score=24.62 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=27.0
Q ss_pred hhhHHHHhhcCC---cEEEEecCCCCCcccccccccccCEEEEeCCCCC
Q 013932 45 HSLYFGSLTSRG---FQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVE 90 (433)
Q Consensus 45 ~S~F~~~L~~rG---f~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~ 90 (433)
.+.+.+.|+..| ++++...+.+... ......||.+||-.....
T Consensus 13 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~---~~~~~~~dgvil~Gg~~~ 58 (188)
T cd01741 13 PGLFEDLLREAGAETIEIDVVDVYAGEL---LPDLDDYDGLVILGGPMS 58 (188)
T ss_pred cchHHHHHHhcCCCCceEEEEecCCCCC---CCCcccCCEEEECCCCcc
Confidence 456666666777 7888765555432 223356799999765443
No 112
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=24.86 E-value=3.1e+02 Score=24.08 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=32.0
Q ss_pred EEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeCCC---CcHHHHHHHHHcCceecCC
Q 013932 81 ALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSN---ASDLIREVATECGVDFDED 137 (433)
Q Consensus 81 ~LII~~p~~~~~~~~ls~~~L~~Fid~GGNlLv~~~~~---~~~~lr~ll~elGI~~~p~ 137 (433)
.|||..+ .+ + -....+...+++.|.++-...+. ...-++..+++.|+.++++
T Consensus 93 ~lii~~~-~~-~---~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~ 147 (172)
T PF06144_consen 93 ILIIFSE-EK-L---DKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKKNGLKIDPD 147 (172)
T ss_dssp EEEEEES--S------HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HH
T ss_pred EEEEEeC-Cc-h---hhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 5666666 22 2 13466899999888776444333 3567889999999999985
No 113
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=24.85 E-value=99 Score=28.40 Aligned_cols=74 Identities=19% Similarity=0.308 Sum_probs=39.1
Q ss_pred hHHHHhhcCCcEEEEecCCCCCccc--c----cccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEe-CCCC
Q 013932 47 LYFGSLTSRGFQLEFKLADDPNIGL--Q----RYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAA-DSNA 119 (433)
Q Consensus 47 ~F~~~L~~rGf~v~~~~~~d~~~~L--~----~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GGNlLv~~-~~~~ 119 (433)
.|.+.|.+.||+.-.. ..+.++.| . -| .+.+|+++|++.-++ |.+ =.+.|++ .|-.+.+.+ ++..
T Consensus 70 ~l~~~l~~~Gf~pv~~-kG~~Dv~laIDame~~~-~~~iD~~vLvSgD~D-F~~--Lv~~lre---~G~~V~v~g~~~~t 141 (160)
T TIGR00288 70 KLIEAVVNQGFEPIIV-AGDVDVRMAVEAMELIY-NPNIDAVALVTRDAD-FLP--VINKAKE---NGKETIVIGAEPGF 141 (160)
T ss_pred HHHHHHHHCCceEEEe-cCcccHHHHHHHHHHhc-cCCCCEEEEEeccHh-HHH--HHHHHHH---CCCEEEEEeCCCCC
Confidence 4666777788885421 12333222 1 12 256788888877666 411 1133333 455677666 3445
Q ss_pred cHHHHHHHH
Q 013932 120 SDLIREVAT 128 (433)
Q Consensus 120 ~~~lr~ll~ 128 (433)
++.++.-+.
T Consensus 142 s~~L~~acd 150 (160)
T TIGR00288 142 STALQNSAD 150 (160)
T ss_pred hHHHHHhcC
Confidence 665555444
No 114
>PF15284 PAGK: Phage-encoded virulence factor
Probab=24.76 E-value=51 Score=25.36 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=17.0
Q ss_pred ChhhhHHHHHHHHHhhhhccccc--cCCCCCCe
Q 013932 1 MAKLLLYLTLATSLIPLFSVAFS--PENPTDRR 31 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~r 31 (433)
|+.--.+.+.++|+|+.+++|++ |.+.++.|
T Consensus 1 Mkk~ksifL~l~~~LsA~~FSasamAa~~~~~~ 33 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGFSASAMAADSSPHR 33 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhhhHHHHHHhhCCCC
Confidence 44333344445567777777777 44444433
No 115
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=24.53 E-value=4.5e+02 Score=29.75 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHCCCc-----EEEEeCCCC---cHHHHHHHHHcCcee
Q 013932 96 IDVASIVDFVDSGHD-----LIVAADSNA---SDLIREVATECGVDF 134 (433)
Q Consensus 96 ls~~~L~~Fid~GGN-----lLv~~~~~~---~~~lr~ll~elGI~~ 134 (433)
++.++|.+++..|+. |+++-|.+- -+.+-++|+++|+..
T Consensus 89 ISl~el~~~~~g~~~LP~K~VaLTFDDGy~s~yt~A~PILkkygvpA 135 (671)
T PRK14582 89 VSVAQILEAHRGGKPLPEKAVLLTFDDGYSSFYTRVFPILQAFQWPA 135 (671)
T ss_pred ccHHHHHHHHhcCCCCCCCeEEEEEEcCCCchHHHHHHHHHHcCCCE
Confidence 567778888876543 677777654 345669999999854
No 116
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=24.29 E-value=2.4e+02 Score=27.15 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=56.5
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcCCcEEEEe-----cCCCCCcccc--cccccccCEEEEeCCCC-Cc---------
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFK-----LADDPNIGLQ--RYGQYLYDALVLFCPSV-ER--------- 91 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~-----~~~d~~~~L~--~~ge~~yd~LII~~p~~-~~--------- 91 (433)
|.|+||.=. ++.-+.+.+.|++.|+++... .|.+....+. -..-..||.||+-++.. +.
T Consensus 3 g~~vlvTRp----~~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~naV~~~~~~l~~~~ 78 (255)
T PRK05752 3 GWRLLLTRP----AEECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPAARLGLELLDRYW 78 (255)
T ss_pred CCEEEECCc----HHHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHHHHHHHHHHHhhC
Confidence 456555432 234467999999999998752 1222111111 01234678888776644 00
Q ss_pred ---------------------CC-------CCCCHHHHHHH--H-----HCCCcEEEEeCCCCcHHHHHHHHHcCceecC
Q 013932 92 ---------------------FG-------GSIDVASIVDF--V-----DSGHDLIVAADSNASDLIREVATECGVDFDE 136 (433)
Q Consensus 92 ---------------------~~-------~~ls~~~L~~F--i-----d~GGNlLv~~~~~~~~~lr~ll~elGI~~~p 136 (433)
.| ..-+.+.|++. + .+|.+||+..+....+.+..-|++.|+.+..
T Consensus 79 ~~~~~~~~~aVG~~Ta~al~~~G~~~~~~p~~~~se~Ll~~~~l~~~~~~~~~~vLi~rg~~~r~~L~~~L~~~G~~v~~ 158 (255)
T PRK05752 79 PQPPQQPWFSVGAATAAILQDYGLDVSYPEQGDDSEALLALPALRQALAVPDPRVLIMRGEGGRELLAERLREQGASVDY 158 (255)
T ss_pred CCCcCCEEEEECHHHHHHHHHcCCCcccCCCCCCcHHHHhChhhhccccCCCCEEEEEccCccHHHHHHHHHHCCCEEeE
Confidence 00 11123455543 2 1456777766666666777777777776655
No 117
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=24.17 E-value=1.4e+02 Score=24.95 Aligned_cols=59 Identities=10% Similarity=0.174 Sum_probs=38.2
Q ss_pred chhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCC---CcEEEEe
Q 013932 44 SHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG---HDLIVAA 115 (433)
Q Consensus 44 ~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~G---GNlLv~~ 115 (433)
+-....+.|+++||+++.. ++++ |.+||.+=....-...-..+.|.++.+.+ ..|.+++
T Consensus 15 Dse~i~~~l~~~G~~~~~~-~e~A------------D~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~G 76 (98)
T PF00919_consen 15 DSERIASILQAAGYEIVDD-PEEA------------DVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTG 76 (98)
T ss_pred HHHHHHHHHHhcCCeeecc-cccC------------CEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 3456889999999998754 4666 99999888776221111226677777766 4444443
No 118
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=23.87 E-value=1.8e+02 Score=30.30 Aligned_cols=156 Identities=17% Similarity=0.129 Sum_probs=72.7
Q ss_pred eEEEEEcCcccccchhhHHHHhh---cCCcEEEEecCCCCCcccccc-cccccCEEEEeCCCCCcCC--CCCC---HHHH
Q 013932 31 RVLVLVDDFAIKSSHSLYFGSLT---SRGFQLEFKLADDPNIGLQRY-GQYLYDALVLFCPSVERFG--GSID---VASI 101 (433)
Q Consensus 31 r~LVl~d~~~~~~~~S~F~~~L~---~rGf~v~~~~~~d~~~~L~~~-ge~~yd~LII~~p~~~~~~--~~ls---~~~L 101 (433)
++||--+.-...+.-..-...|+ .-.|.|....++ .|... -...++.||+ |- ...++ ..+. .+.|
T Consensus 2 nVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~----~l~~~pw~~~~~LlV~-PG-G~d~~y~~~l~~~g~~~I 75 (367)
T PF09825_consen 2 NVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTAD----ELLNEPWQSKCALLVM-PG-GADLPYCRSLNGEGNRRI 75 (367)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHH----HhhcCccccCCcEEEE-CC-CcchHHHHhhChHHHHHH
Confidence 34554444333333233344443 235888876322 12221 1334565555 43 22221 2233 3699
Q ss_pred HHHHHCCCcEE-EEeCC----CC-----cH-HHH-HHHHHcCceecCCCCeEEEeccCccccCCCCCceEEeeccccccc
Q 013932 102 VDFVDSGHDLI-VAADS----NA-----SD-LIR-EVATECGVDFDEDPAAMVIDHINYAVSNFDGDHTLIASDDFIKAD 169 (433)
Q Consensus 102 ~~Fid~GGNlL-v~~~~----~~-----~~-~lr-~ll~elGI~~~p~~~~~VvDhf~~~~~~~~~~~~~i~~~~~i~~~ 169 (433)
++||.+||+-| +-++. .. +. .+. .=-+||++.+---+|. +..-|.|... .+...+-+ . . ..+
T Consensus 76 r~fV~~GG~YlGiCAGaY~as~~~ef~~g~p~lev~g~ReL~ffpG~~rG~-~~~gf~Y~se--~Gara~~l-~-~-~~~ 149 (367)
T PF09825_consen 76 RQFVENGGGYLGICAGAYYASSRCEFEVGNPKLEVVGPRELAFFPGIARGP-AFPGFQYNSE--SGARAVKL-K-V-NDS 149 (367)
T ss_pred HHHHHcCCcEEEECcchhhhcceeEeccCCcceEeecCcccccccCCccCc-cccCCccCCC--CCeEeEEE-E-e-cCC
Confidence 99999999988 54432 11 11 111 1234667776554465 4566777632 22211111 1 1 111
Q ss_pred eeccCCcccCceeeeceeEEecCCCc-eeEeee
Q 013932 170 VILGSKKIEAPVLFQGIGHSLNPANS-LVLKVL 201 (433)
Q Consensus 170 ~i~~~~~~~~~vl~~g~g~~l~~~n~-l~~pIL 201 (433)
. .......+.|+|.|..++.++. .-+-||
T Consensus 150 ~---~~~~~~~~yynGG~~Fv~~~~~~~~v~vL 179 (367)
T PF09825_consen 150 Q---AVPSEFSSYYNGGGVFVDADKYDKNVEVL 179 (367)
T ss_pred C---CCCceeEEEECCceEEeCccccCCCeEEE
Confidence 0 0011123578888888875543 444555
No 119
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=23.68 E-value=2.6e+02 Score=24.60 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=46.3
Q ss_pred CeEEEEEcCc--ccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC
Q 013932 30 RRVLVLVDDF--AIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (433)
Q Consensus 30 ~r~LVl~d~~--~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~ 107 (433)
.|+++++.+. +.+.-=....+.|..+|++++.....+.... ....||++++-.|... . +.+. ..+.+|++.
T Consensus 2 ~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~~~~~~~~~~~~~~----~~~~~d~~~~g~~t~~-~-ge~~-~~~~~f~~~ 74 (151)
T COG0716 2 MKILIVYGSRTGNTEKVAEIIAEELGADGFEVDIDIRPGIKDD----LLESYDELLLGTPTWG-A-GELP-DDWYDFIEE 74 (151)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHhccCCceEEEeecCCcchh----hhccCCEEEEEeCCCC-C-CcCC-ccHHHHHHH
Confidence 4678888654 2333344688899999999966533322111 1135688888888653 2 4355 788888876
Q ss_pred CCc
Q 013932 108 GHD 110 (433)
Q Consensus 108 GGN 110 (433)
+.+
T Consensus 75 ~~~ 77 (151)
T COG0716 75 LEP 77 (151)
T ss_pred hcc
Confidence 655
No 120
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=23.58 E-value=2e+02 Score=29.21 Aligned_cols=80 Identities=19% Similarity=0.112 Sum_probs=47.3
Q ss_pred CeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCH-------HHHH
Q 013932 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDV-------ASIV 102 (433)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~-------~~L~ 102 (433)
+.-+.++|....- -..-...|+..+.+-...-.+ +++...+..||.+|-.||=.+.. .+.. +.=.
T Consensus 182 ~~~vtmvDvn~~A--v~~ar~Nl~~N~~~~~~v~~s----~~~~~v~~kfd~IisNPPfh~G~--~v~~~~~~~~i~~A~ 253 (300)
T COG2813 182 QAKLTLVDVNARA--VESARKNLAANGVENTEVWAS----NLYEPVEGKFDLIISNPPFHAGK--AVVHSLAQEIIAAAA 253 (300)
T ss_pred CCeEEEEecCHHH--HHHHHHhHHHcCCCccEEEEe----cccccccccccEEEeCCCccCCc--chhHHHHHHHHHHHH
Confidence 5556677653211 112344565554443211111 34555666999999999977633 3344 3345
Q ss_pred HHHHCCCcEEEEeCC
Q 013932 103 DFVDSGHDLIVAADS 117 (433)
Q Consensus 103 ~Fid~GGNlLv~~~~ 117 (433)
+++..||.|+|.+..
T Consensus 254 ~~L~~gGeL~iVan~ 268 (300)
T COG2813 254 RHLKPGGELWIVANR 268 (300)
T ss_pred HhhccCCEEEEEEcC
Confidence 789999999988873
No 121
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=23.57 E-value=1.2e+02 Score=32.19 Aligned_cols=75 Identities=21% Similarity=0.116 Sum_probs=49.2
Q ss_pred CeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCC-CCCcccccccccccCEEEEeCCCCCcCCCCCC-----HHHHHH
Q 013932 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLAD-DPNIGLQRYGQYLYDALVLFCPSVERFGGSID-----VASIVD 103 (433)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~-d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls-----~~~L~~ 103 (433)
-|+-|..|. ....-|..=++.|+++|.++.+..|- |.+ .+.+|.|+|=......+...+. .+.|.+
T Consensus 245 ~~Iava~d~-afnFy~~~~~~~L~~~g~~~~~~~~~~d~~-------l~~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~ 316 (449)
T TIGR00379 245 VRIAVAQDQ-AFNFYYQDNLDALTHNAAELVPFSPLEDTE-------LPDVDAVYIGGGFPELFAEELSQNQALRDSIKT 316 (449)
T ss_pred cEEEEEech-hhceeHHHHHHHHHHCCCEEEEECCccCCC-------CCCCCEEEeCCcHHHHHHHHHHhhhHHHHHHHH
Confidence 378888885 55666667778899999999987553 332 1245777774443322222232 388999
Q ss_pred HHHCCCcEE
Q 013932 104 FVDSGHDLI 112 (433)
Q Consensus 104 Fid~GGNlL 112 (433)
|+++|+-++
T Consensus 317 ~~~~G~pv~ 325 (449)
T TIGR00379 317 FIHQGLPIY 325 (449)
T ss_pred HHHcCCCEE
Confidence 999998776
No 122
>PF10611 DUF2469: Protein of unknown function (DUF2469); InterPro: IPR019592 This entry represents a group of proteins often found in Actinomycetes species, clustered with signal peptidase and/or RNAse-HII.
Probab=23.52 E-value=57 Score=27.24 Aligned_cols=44 Identities=32% Similarity=0.492 Sum_probs=34.5
Q ss_pred CceeeeEEEEeeeeccceeeeeeeeEeecCCCCCcc-cccccCCcch
Q 013932 366 DVYGVFQFKVEYQRLGYTSLSLSKQIPVRPYRHNEY-ERFLPAAYPY 411 (433)
Q Consensus 366 D~hGvf~f~v~Y~R~G~t~l~~~~~v~VR~~~hdey-~Rfi~~a~py 411 (433)
|+-|.|+|.|.-.|..| |-..-.+.+|.-.+|-| +=.++.||+|
T Consensus 23 DVv~lF~yvVETeRRFY--LaN~Vd~~~r~~~g~vyfEv~m~DaWVW 67 (101)
T PF10611_consen 23 DVVGLFSYVVETERRFY--LANQVDVQVRSAGGDVYFEVSMSDAWVW 67 (101)
T ss_pred HHHhheeeEEEeeeeeE--eecceEEEEecCCCcEEEEEEecceEEE
Confidence 77899999999999875 55666677788777765 3348999987
No 123
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=23.52 E-value=2.7e+02 Score=25.69 Aligned_cols=94 Identities=11% Similarity=0.064 Sum_probs=51.8
Q ss_pred EEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEE
Q 013932 33 LVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLI 112 (433)
Q Consensus 33 LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GGNlL 112 (433)
++|+|+. +..+| ++.+.|+++|++++...+++.+ +.......+|.||+.+...... ..-....+.+.++++-=+|
T Consensus 2 il~id~~-dsft~-~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~iilsgGp~~~~-~~~~~~~~i~~~~~~~PiL 76 (193)
T PRK08857 2 LLMIDNY-DSFTY-NLYQYFCELGAQVKVVRNDEID--IDGIEALNPTHLVISPGPCTPN-EAGISLQAIEHFAGKLPIL 76 (193)
T ss_pred EEEEECC-CCcHH-HHHHHHHHCCCcEEEEECCCCC--HHHHhhCCCCEEEEeCCCCChH-HCcchHHHHHHhcCCCCEE
Confidence 4566765 22222 3778888999999987655433 2222233468888776432211 1112234555565554455
Q ss_pred -EEeCCCCcHHHHHHHHHcCceecCC
Q 013932 113 -VAADSNASDLIREVATECGVDFDED 137 (433)
Q Consensus 113 -v~~~~~~~~~lr~ll~elGI~~~p~ 137 (433)
|- -+.+.++..+|=++.+.
T Consensus 77 GIC------lG~Qlia~a~Gg~v~~~ 96 (193)
T PRK08857 77 GVC------LGHQAIAQVFGGQVVRA 96 (193)
T ss_pred EEc------HHHHHHHHHhCCEEEeC
Confidence 32 35667788888655553
No 124
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=23.11 E-value=3e+02 Score=24.18 Aligned_cols=57 Identities=21% Similarity=0.204 Sum_probs=34.4
Q ss_pred eEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCC------ccc------ccccccccCEEEEeCC
Q 013932 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPN------IGL------QRYGQYLYDALVLFCP 87 (433)
Q Consensus 31 r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~------~~L------~~~ge~~yd~LII~~p 87 (433)
|+.+++-+.-...++....+-|+..||++....++... +.+ ..-....||.|+|..-
T Consensus 1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg 69 (166)
T TIGR01382 1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGG 69 (166)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCC
Confidence 45566655445566777788888899999876544321 111 1112235898888663
No 125
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.75 E-value=1.7e+02 Score=25.71 Aligned_cols=83 Identities=12% Similarity=0.061 Sum_probs=47.1
Q ss_pred HHHHhhcCCcEEEEecCCCCCcc-cccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC-CC-cEEEEeCCCCcHHHH
Q 013932 48 YFGSLTSRGFQLEFKLADDPNIG-LQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS-GH-DLIVAADSNASDLIR 124 (433)
Q Consensus 48 F~~~L~~rGf~v~~~~~~d~~~~-L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~-GG-NlLv~~~~~~~~~lr 124 (433)
....|+..||+|.....+.+.-. ...--+...|.++|-+-..... -..+.+.+-+++ |- ++.|..+...++.-.
T Consensus 22 v~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~---~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~ 98 (132)
T TIGR00640 22 IATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHL---TLVPALRKELDKLGRPDILVVVGGVIPPQDF 98 (132)
T ss_pred HHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhH---HHHHHHHHHHHhcCCCCCEEEEeCCCChHhH
Confidence 45678889999987644432211 2223344557777755443322 134666666665 43 565555543344445
Q ss_pred HHHHHcCce
Q 013932 125 EVATECGVD 133 (433)
Q Consensus 125 ~ll~elGI~ 133 (433)
+-+.++||.
T Consensus 99 ~~l~~~Gvd 107 (132)
T TIGR00640 99 DELKEMGVA 107 (132)
T ss_pred HHHHHCCCC
Confidence 668899984
No 126
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=22.63 E-value=2.3e+02 Score=28.41 Aligned_cols=71 Identities=17% Similarity=0.296 Sum_probs=46.8
Q ss_pred hHHHHhhcCCcEEEEecCCCCC-----c-ccccccccccCEEEEeCCCCCcCCCCCCH--HHHHHHHHCCCcEEEEeCC
Q 013932 47 LYFGSLTSRGFQLEFKLADDPN-----I-GLQRYGQYLYDALVLFCPSVERFGGSIDV--ASIVDFVDSGHDLIVAADS 117 (433)
Q Consensus 47 ~F~~~L~~rGf~v~~~~~~d~~-----~-~L~~~ge~~yd~LII~~p~~~~~~~~ls~--~~L~~Fid~GGNlLv~~~~ 117 (433)
.|.+.|.++|++|-+.+-.++. . .|.+.|.+-+++|++=++....-...+.- +.-.+-+++|=+|....+.
T Consensus 152 ~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYrIv~~iGD 230 (275)
T TIGR01680 152 KNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGYNIVGIIGD 230 (275)
T ss_pred HHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCceEEEEECC
Confidence 4788999999999886655532 2 37789999899999976642211111222 3345667788898866544
No 127
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=22.27 E-value=5.2e+02 Score=23.20 Aligned_cols=85 Identities=11% Similarity=0.201 Sum_probs=47.9
Q ss_pred CeEEEEEcCccccc-chhhHHHHhhcCCcEEEEecCCCCCcccccc-ccccc-CEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013932 30 RRVLVLVDDFAIKS-SHSLYFGSLTSRGFQLEFKLADDPNIGLQRY-GQYLY-DALVLFCPSVERFGGSIDVASIVDFVD 106 (433)
Q Consensus 30 ~r~LVl~d~~~~~~-~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~-ge~~y-d~LII~~p~~~~~~~~ls~~~L~~Fid 106 (433)
.||||++-..+.+. .-..-.+.+++.||++.-. + .+.|.+. -+..| +| +.+ ---+.|++|+-
T Consensus 3 e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~--k--~~~lt~~~a~~fY~~~------~gk-----~ff~~Lv~~m~ 67 (149)
T PTZ00093 3 ERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVAL--K--MLQPTPEIAEEHYKEH------KGK-----PFFPGLVKYIS 67 (149)
T ss_pred ceEEEEECcchhhcCchHHHHHHHHHCCCEEEEe--E--eecCCHHHHHHHHHHh------cCC-----chHHHHHHHHh
Confidence 69999997766643 3367899999999999853 0 1112211 12222 11 111 12367999998
Q ss_pred CCCcEEEEeCCCCcHHHHHHHHHcC
Q 013932 107 SGHDLIVAADSNASDLIREVATECG 131 (433)
Q Consensus 107 ~GGNlLv~~~~~~~~~lr~ll~elG 131 (433)
.|--+.+..... +.++.+-+-+|
T Consensus 68 sGp~val~l~g~--nav~~~R~l~G 90 (149)
T PTZ00093 68 SGPVVCMVWEGK--NVVKQGRKLLG 90 (149)
T ss_pred cCCEEEEEEeCC--CHHHHHHHHhC
Confidence 887655444321 34444444444
No 128
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=22.19 E-value=3.6e+02 Score=21.21 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=41.9
Q ss_pred hHHHHhhcCCc-EEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH---CCCcEEEEeCCCCcHH
Q 013932 47 LYFGSLTSRGF-QLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD---SGHDLIVAADSNASDL 122 (433)
Q Consensus 47 ~F~~~L~~rGf-~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid---~GGNlLv~~~~~~~~~ 122 (433)
.+.+.|+..|+ ++... .+.+-.+..-....+|.+++=-.-.+ .+...+.+.+. ....+++.++....+.
T Consensus 13 ~l~~~l~~~~~~~v~~~--~~~~~~~~~~~~~~~d~iiid~~~~~-----~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~ 85 (112)
T PF00072_consen 13 LLEKLLERAGYEEVTTA--SSGEEALELLKKHPPDLIIIDLELPD-----GDGLELLEQIRQINPSIPIIVVTDEDDSDE 85 (112)
T ss_dssp HHHHHHHHTTEEEEEEE--SSHHHHHHHHHHSTESEEEEESSSSS-----SBHHHHHHHHHHHTTTSEEEEEESSTSHHH
T ss_pred HHHHHHHhCCCCEEEEE--CCHHHHHHHhcccCceEEEEEeeecc-----ccccccccccccccccccEEEecCCCCHHH
Confidence 45566668999 77743 33222333334444777777432212 34433333333 4567777776655555
Q ss_pred HHHHHHHcCce
Q 013932 123 IREVATECGVD 133 (433)
Q Consensus 123 lr~ll~elGI~ 133 (433)
....+ ++|+.
T Consensus 86 ~~~~~-~~g~~ 95 (112)
T PF00072_consen 86 VQEAL-RAGAD 95 (112)
T ss_dssp HHHHH-HTTES
T ss_pred HHHHH-HCCCC
Confidence 55554 77753
No 129
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=21.84 E-value=1.8e+02 Score=25.35 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=32.9
Q ss_pred eeccccCCCceEEEEEecCCceeeeEEEEeeeeccceeeeee
Q 013932 347 LKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQRLGYTSLSLS 388 (433)
Q Consensus 347 R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R~G~t~l~~~ 388 (433)
++.|++.++|.|.+..+.| .-|.+..+|+.++.|=.+-.+.
T Consensus 103 ~~~l~~~~~g~y~~~~~~~-~~G~W~l~l~~~~~~~~~~~~~ 143 (146)
T PF05751_consen 103 TLTLTESAPGVYRAPVPLL-KKGRWYLRLDWEPGDKSWRLEQ 143 (146)
T ss_pred eEEeeECCCceEEEEcCCC-CCccEEEEEEEecCCCeEEEEE
Confidence 4556677899999999999 8999999998888776665444
No 130
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=21.83 E-value=2.3e+02 Score=24.94 Aligned_cols=88 Identities=17% Similarity=0.156 Sum_probs=47.9
Q ss_pred hHHHHhhcCCcEEEEecCCCCCcccc-cccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCC--cEEEEeCCC--Cc-
Q 013932 47 LYFGSLTSRGFQLEFKLADDPNIGLQ-RYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGH--DLIVAADSN--AS- 120 (433)
Q Consensus 47 ~F~~~L~~rGf~v~~~~~~d~~~~L~-~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GG--NlLv~~~~~--~~- 120 (433)
-....|++.||+|-....+-+.-.+. .--+..-|.+-+-+-.+... ...+.+.+-+.+-| ++.|+.+-. .+
T Consensus 18 iv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~---~~~~~~~~~l~~~gl~~v~vivGG~~~i~~ 94 (128)
T cd02072 18 ILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGE---IDCKGLREKCDEAGLKDILLYVGGNLVVGK 94 (128)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCH---HHHHHHHHHHHHCCCCCCeEEEECCCCCCh
Confidence 35668999999998754433221221 22233346666644333322 23466666665544 454433322 22
Q ss_pred ---HHHHHHHHHcCce--ecCC
Q 013932 121 ---DLIREVATECGVD--FDED 137 (433)
Q Consensus 121 ---~~lr~ll~elGI~--~~p~ 137 (433)
+.-++.|.++|+. |.|+
T Consensus 95 ~d~~~~~~~L~~~Gv~~vf~pg 116 (128)
T cd02072 95 QDFEDVEKRFKEMGFDRVFAPG 116 (128)
T ss_pred hhhHHHHHHHHHcCCCEEECcC
Confidence 3355789999996 6663
No 131
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=21.57 E-value=3.6e+02 Score=23.40 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=43.0
Q ss_pred CeEEEEEcCcccccch-hhHHHHhhcCCcEEEEecCCCCCccccccc-cccc-CEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013932 30 RRVLVLVDDFAIKSSH-SLYFGSLTSRGFQLEFKLADDPNIGLQRYG-QYLY-DALVLFCPSVERFGGSIDVASIVDFVD 106 (433)
Q Consensus 30 ~r~LVl~d~~~~~~~~-S~F~~~L~~rGf~v~~~~~~d~~~~L~~~g-e~~y-d~LII~~p~~~~~~~~ls~~~L~~Fid 106 (433)
.|||+++-+...+..+ ..-.+.|.+.||++.-. ..+.|.+.. +..| +| +.+ -.-+.|++|+.
T Consensus 1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~----k~~~ls~~~a~~~y~~~------~~k-----~~~~~l~~~m~ 65 (130)
T cd04413 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVAL----KMLQLTEELAEEHYAEH------KGK-----PFFPELVEFMT 65 (130)
T ss_pred CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEe----eeccCCHHHHHHHhhhh------cCC-----chHHHHHHHHh
Confidence 4899999777664333 57899999999999853 011222111 2223 22 112 23467999998
Q ss_pred CCCcEEEEe
Q 013932 107 SGHDLIVAA 115 (433)
Q Consensus 107 ~GGNlLv~~ 115 (433)
.|.-+.+..
T Consensus 66 sgp~~al~l 74 (130)
T cd04413 66 SGPVVAMVL 74 (130)
T ss_pred cCCEEEEEE
Confidence 887655444
No 132
>PHA02127 hypothetical protein
Probab=21.41 E-value=44 Score=24.51 Aligned_cols=48 Identities=10% Similarity=0.123 Sum_probs=33.7
Q ss_pred HHhhcccCcCceEEEeeeEEEecCCCC---CCcceEeCCceEEEEEEEEEe
Q 013932 276 EISKWVFHERGHLKAVNVRHHKVGESD---EPAIYRINDDLEYSVEIYEWS 323 (433)
Q Consensus 276 ~l~~W~F~e~gvLr~~~~~H~~~~~~~---~~~~Y~i~d~v~y~i~i~e~~ 323 (433)
.|.++-|+|-.|-++.+--|....... -...|-|||.|..+.++-+++
T Consensus 6 hlvnfg~g~l~v~~i~syfhv~~sad~m~pigt~fpikdtv~l~adviqln 56 (57)
T PHA02127 6 HLVNFGHGELAVKKVASYFHVLKSADPMLPVGTEFPIKDTVTLDADVIQLN 56 (57)
T ss_pred eEEeeccceeeHHHhhhheeeecccCccccccccccccceEEeeeeEEEec
Confidence 456677777777777776676543222 244699999999998887765
No 133
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=21.18 E-value=2.9e+02 Score=22.82 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=50.6
Q ss_pred hhHHHHhhcCCcEEEEecCCCCCcccc-cccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCC-c-EEEEeCCCCcHH
Q 013932 46 SLYFGSLTSRGFQLEFKLADDPNIGLQ-RYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGH-D-LIVAADSNASDL 122 (433)
Q Consensus 46 S~F~~~L~~rGf~v~~~~~~d~~~~L~-~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GG-N-lLv~~~~~~~~~ 122 (433)
......|+++||++.+..+.-..-.+. .-.+..+|.+.+-.+....+ -....+.+.+.+.+ + .++++++..+-.
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~---~~~~~l~~~~k~~~p~~~iv~GG~~~t~~ 94 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNL---PEAKRLARAIKERNPNIPIVVGGPHATAD 94 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHH---HHHHHHHHHHHTTCTTSEEEEEESSSGHH
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcH---HHHHHHHHHHHhcCCCCEEEEECCchhcC
Confidence 357788999999999874433212222 22234678887755433323 24477777777653 3 556677766555
Q ss_pred HHHHHHH-cCce
Q 013932 123 IREVATE-CGVD 133 (433)
Q Consensus 123 lr~ll~e-lGI~ 133 (433)
-+.++++ .|++
T Consensus 95 ~~~~l~~~~~~D 106 (121)
T PF02310_consen 95 PEEILREYPGID 106 (121)
T ss_dssp HHHHHHHHHTSE
T ss_pred hHHHhccCcCcc
Confidence 5666766 5554
No 134
>PRK08114 cystathionine beta-lyase; Provisional
Probab=21.14 E-value=2e+02 Score=30.10 Aligned_cols=90 Identities=18% Similarity=0.085 Sum_probs=51.2
Q ss_pred CCCCCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHH
Q 013932 26 NPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFV 105 (433)
Q Consensus 26 s~~~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fi 105 (433)
...|+++++- +.....++.-+.+.|+..|.++++..+.|.. .+.+.-.+....+.+=.|+.- .+.-.+.+.|.+..
T Consensus 98 l~~GD~Vv~~--~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~-~l~~~l~~~TrlV~~EtpsNp-~~~v~DI~~Ia~ia 173 (395)
T PRK08114 98 VEQGDHVLMT--GTAYEPTQDFCSKILSKLGVTTTWFDPLIGA-DIAKLIQPNTKVVFLESPGSI-TMEVHDVPAIVAAV 173 (395)
T ss_pred cCCCCEEEEe--CCCcHHHHHHHHHHHHhcCcEEEEECCCCHH-HHHHhcCCCceEEEEECCCCC-CCEeecHHHHHHHH
Confidence 3457775543 3344455555667788899999987554421 122211122344444444443 33445668888888
Q ss_pred HCCC-cEEEEeCCCC
Q 013932 106 DSGH-DLIVAADSNA 119 (433)
Q Consensus 106 d~GG-NlLv~~~~~~ 119 (433)
.+-| +++++.|...
T Consensus 174 ~~~g~g~~lvVDnT~ 188 (395)
T PRK08114 174 RSVNPDAVIMIDNTW 188 (395)
T ss_pred HHhCCCCEEEEECCC
Confidence 7654 6777777654
No 135
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=21.12 E-value=2e+02 Score=24.55 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=52.6
Q ss_pred eEEEEEcCcccccc--hhhHHHHhhcCCcEEEEecCCCCC--ccccc-cccccc-CEEEEeCCCCCcCCCCCCHHHHHHH
Q 013932 31 RVLVLVDDFAIKSS--HSLYFGSLTSRGFQLEFKLADDPN--IGLQR-YGQYLY-DALVLFCPSVERFGGSIDVASIVDF 104 (433)
Q Consensus 31 r~LVl~d~~~~~~~--~S~F~~~L~~rGf~v~~~~~~d~~--~~L~~-~ge~~y-d~LII~~p~~~~~~~~ls~~~L~~F 104 (433)
|++|++...+-+.. ..++...|+..|.+++......+. -.+.. .....+ |.+|+. ||+-+...+++-
T Consensus 1 k~~vi~Np~sG~~~~~~~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~-------GGDGTl~~vv~~ 73 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAKWKKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVV-------GGDGTLNEVVNG 73 (130)
T ss_dssp SEEEEEETTSTTSHHHHHHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEE-------ESHHHHHHHHHH
T ss_pred CEEEEECCCCCCCchhHHHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEE-------cCccHHHHHHHH
Confidence 68899988655332 346788888899887765333321 11222 223333 666663 344566666666
Q ss_pred HHCCCc----EEEEeCCCCcHHHHHHHHHcCceecCC
Q 013932 105 VDSGHD----LIVAADSNASDLIREVATECGVDFDED 137 (433)
Q Consensus 105 id~GGN----lLv~~~~~~~~~lr~ll~elGI~~~p~ 137 (433)
+-+-+. -+-..+.++. +.|+..+|+...+.
T Consensus 74 l~~~~~~~~~~l~iiP~GT~---N~~ar~lg~~~~~~ 107 (130)
T PF00781_consen 74 LMGSDREDKPPLGIIPAGTG---NDFARSLGIPSDPE 107 (130)
T ss_dssp HCTSTSSS--EEEEEE-SSS----HHHHHTT--SSHH
T ss_pred HhhcCCCccceEEEecCCCh---hHHHHHcCCCCCcH
Confidence 655554 3433344433 46777777766664
No 136
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=21.08 E-value=3.3e+02 Score=23.67 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=37.4
Q ss_pred EEEEcCc-cc-ccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013932 33 LVLVDDF-AI-KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD 106 (433)
Q Consensus 33 LVl~d~~-~~-~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid 106 (433)
||+|+.. +. +.-=..+.+.|.++|..++......... ....||.+|+.+|-.. +.+.. .+.+|++
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~~~~~v~~~~~~~~~~-----~~~~yD~vi~gspiy~---g~~~~-~~~~fi~ 67 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGEEGELVDLEKVEEDEP-----DLSDYDAVIFGSPIYA---GRIPG-EMREFIK 67 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhhhccEEEHHhhhhccc-----ccccCCEEEEEEEEEC---CcCCH-HHHHHHH
Confidence 5777664 22 2222346777888888888654322222 3445699999999765 32333 3445554
No 137
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=20.75 E-value=2.6e+02 Score=27.14 Aligned_cols=70 Identities=9% Similarity=0.053 Sum_probs=45.8
Q ss_pred HHHHhhcCCcEEEEecCCCCCc------ccccccccccCEEEEeCCCCCcCCCCCC-H-HHHHHHHHCCCcEEEEeCCC
Q 013932 48 YFGSLTSRGFQLEFKLADDPNI------GLQRYGQYLYDALVLFCPSVERFGGSID-V-ASIVDFVDSGHDLIVAADSN 118 (433)
Q Consensus 48 F~~~L~~rGf~v~~~~~~d~~~------~L~~~ge~~yd~LII~~p~~~~~~~~ls-~-~~L~~Fid~GGNlLv~~~~~ 118 (433)
|.+.|+++|++|-+.+-.++.. .|.+.|.+-|++|++-++..+ -...+. . +...+-+++|=+|....+..
T Consensus 128 l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~~~d~-~~~~~~yKs~~R~~l~~~GYrIv~~iGDq 205 (229)
T TIGR01675 128 LYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRGLEDS-NKTVVTYKSEVRKSLMEEGYRIWGNIGDQ 205 (229)
T ss_pred HHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecCCCCC-CchHhHHHHHHHHHHHhCCceEEEEECCC
Confidence 8889999999998865555322 377889888999999775322 111111 2 34446666777888655443
No 138
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=20.74 E-value=2.3e+02 Score=31.08 Aligned_cols=75 Identities=12% Similarity=0.204 Sum_probs=46.3
Q ss_pred CCCCCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCC-------CH
Q 013932 26 NPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSI-------DV 98 (433)
Q Consensus 26 s~~~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l-------s~ 98 (433)
|.+.++.++++|--. ...-...+.|+.+|+++......+ ....+|.|||-.+.. ++..+ -.
T Consensus 2 ~~~~~~~i~iiDyG~--GN~~sl~~al~~~G~~v~~v~~~~--------~l~~~D~lIlpG~gs--~~~~m~~L~~~gl~ 69 (538)
T PLN02617 2 SNSADSEVTLLDYGA--GNVRSVRNAIRHLGFTIKDVQTPE--------DILNADRLIFPGVGA--FGSAMDVLNNRGMA 69 (538)
T ss_pred CCCCCCeEEEEECCC--CCHHHHHHHHHHCCCeEEEECChh--------hhccCCEEEECCCCC--HHHHHHHHHHcCHH
Confidence 455678888998642 222356778889999997653211 124568888833222 21100 13
Q ss_pred HHHHHHHHCCCcEE
Q 013932 99 ASIVDFVDSGHDLI 112 (433)
Q Consensus 99 ~~L~~Fid~GGNlL 112 (433)
+.|.+|+++|.-+|
T Consensus 70 ~~i~~~i~~g~PvL 83 (538)
T PLN02617 70 EALREYIQNDRPFL 83 (538)
T ss_pred HHHHHHHHcCCCEE
Confidence 67999999888777
No 139
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=20.73 E-value=3.8e+02 Score=25.50 Aligned_cols=100 Identities=11% Similarity=0.107 Sum_probs=64.8
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCC-cccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPN-IGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~-~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~ 107 (433)
..|++.++-.. ..++--...+.|.+-|+.+-..+-..+. +...+.--..|..++|-+-++ ++.++..+.++.
T Consensus 7 ~~~liaVlr~~-~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTV------l~~~~a~~a~~a 79 (204)
T TIGR01182 7 EAKIVPVIRID-DVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTV------LNPEQLRQAVDA 79 (204)
T ss_pred hCCEEEEEecC-CHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeC------CCHHHHHHHHHc
Confidence 45677777443 2233345777888888765544333222 222222122344466655443 488999999999
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHcCceecCC
Q 013932 108 GHDLIVAADSNASDLIREVATECGVDFDED 137 (433)
Q Consensus 108 GGNlLv~~~~~~~~~lr~ll~elGI~~~p~ 137 (433)
|.+.+ .+|...+.+-..++++||-.-|+
T Consensus 80 GA~Fi--vsP~~~~~v~~~~~~~~i~~iPG 107 (204)
T TIGR01182 80 GAQFI--VSPGLTPELAKHAQDHGIPIIPG 107 (204)
T ss_pred CCCEE--ECCCCCHHHHHHHHHcCCcEECC
Confidence 99988 45677778889999999999997
No 140
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=20.59 E-value=3.3e+02 Score=28.66 Aligned_cols=56 Identities=23% Similarity=0.271 Sum_probs=32.2
Q ss_pred CEEEEeCCCCCcCCCCCCHHHHHHHHHC----CCcEEEEeCCCCcHHHHHHHHHcCceecCC
Q 013932 80 DALVLFCPSVERFGGSIDVASIVDFVDS----GHDLIVAADSNASDLIREVATECGVDFDED 137 (433)
Q Consensus 80 d~LII~~p~~~~~~~~ls~~~L~~Fid~----GGNlLv~~~~~~~~~lr~ll~elGI~~~p~ 137 (433)
|-+.+.+++...++++.-.-.+.+|+-+ +|. |+.+-..+..+..+++++|+++..-
T Consensus 245 DR~~ivd~~G~~i~~d~~~al~a~~ll~~~~~~~~--vv~~v~ss~~i~~ia~~~g~~v~~t 304 (445)
T cd05803 245 DRLALVDEDGRPIGEEYTLALAVDYVLKYGGRKGP--VVVNLSTSRALEDIARKHGVPVFRS 304 (445)
T ss_pred ceEEEECCCCCCcChHHHHHHHHHHHHHhcCCCCC--EEEeccchHHHHHHHHHcCCEEEEe
Confidence 4555555554433222111234455432 454 3455556778999999999988763
No 141
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=20.45 E-value=2.9e+02 Score=28.03 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=31.5
Q ss_pred CEEEEeCCCCCcCCCCCCHHHHHHHHH-C---CCcEEEEeCCCCcHHHHHHHHHcCceecC
Q 013932 80 DALVLFCPSVERFGGSIDVASIVDFVD-S---GHDLIVAADSNASDLIREVATECGVDFDE 136 (433)
Q Consensus 80 d~LII~~p~~~~~~~~ls~~~L~~Fid-~---GGNlLv~~~~~~~~~lr~ll~elGI~~~p 136 (433)
|-|++...+..-+.++.-.-.+.+|+- + +|. |+.+...+..+..+++++|+++..
T Consensus 186 DRl~~vd~~G~~l~~d~~~al~~~~l~~~~~~~~~--vv~~v~ss~~i~~ia~~~g~~v~~ 244 (355)
T cd03084 186 DRLIVVDENGGFLDGDELLALLAVELFLTFNPRGG--VVKTVVSSGALDKVAKKLGIKVIR 244 (355)
T ss_pred ceeEEECCCCceeCHhHHHHHHHHHHHHhcCCCCC--EEEEccchHHHHHHHHHcCCcEEE
Confidence 566666665443322111123344443 2 444 445555677899999999987766
No 142
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=20.31 E-value=94 Score=32.40 Aligned_cols=77 Identities=18% Similarity=0.361 Sum_probs=48.1
Q ss_pred eeeccCCC-eEEEEEEeCceEeeccccCCCceEEEEEecCCceeeeEEEEeeeeccce---eee----eeeeEeecCCCC
Q 013932 327 WEPYVSDD-VQVQFYMMSPYVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQRLGYT---SLS----LSKQIPVRPYRH 398 (433)
Q Consensus 327 W~P~~~~d-iQlEf~mldPy~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R~G~t---~l~----~~~~v~VR~~~h 398 (433)
|=-|++|- -|-=++ -||+-.||+ +...-...|..|-+-|+|||.|--|---|- ++. +-...+-.|-.|
T Consensus 414 WW~Yi~drKsrtLlt--~PyhV~tL~--d~eei~lkF~AP~~pG~Ytytv~lrSDSYmg~dq~~~lKldV~eAk~vp~~H 489 (520)
T KOG4434|consen 414 WWLYIADRKSRTLLT--MPYHVCTLK--DTEEIELKFPAPGKPGNYTYTVFLRSDSYMGLDQIKPLKLDVHEAKPVPENH 489 (520)
T ss_pred eeeeeecccccceec--chhhhhccc--ccceeEEeccCCCCCCceEEEEEEecccccChhhccceeeeeccCCCCCCCC
Confidence 44477543 111133 399999987 344567799999999999999988765332 211 111223347788
Q ss_pred CcccccccC
Q 013932 399 NEYERFLPA 407 (433)
Q Consensus 399 dey~Rfi~~ 407 (433)
++|--.|..
T Consensus 490 pqwd~~~~e 498 (520)
T KOG4434|consen 490 PQWDTAIEE 498 (520)
T ss_pred ccccccccc
Confidence 888765543
No 143
>PRK11914 diacylglycerol kinase; Reviewed
Probab=20.08 E-value=1.5e+02 Score=29.30 Aligned_cols=95 Identities=18% Similarity=0.136 Sum_probs=53.9
Q ss_pred CCeEEEEEcCcccc----cchhhHHHHhhcCCcEEEEecC---CCCCcccc-cccccccCEEEEeCCCCCcCCCCCCHHH
Q 013932 29 DRRVLVLVDDFAIK----SSHSLYFGSLTSRGFQLEFKLA---DDPNIGLQ-RYGQYLYDALVLFCPSVERFGGSIDVAS 100 (433)
Q Consensus 29 ~~r~LVl~d~~~~~----~~~S~F~~~L~~rGf~v~~~~~---~d~~~~L~-~~ge~~yd~LII~~p~~~~~~~~ls~~~ 100 (433)
-+|+++++...+-+ ....+....|+++|++++.... .|+ ..+. +.-+..+|.||+. ||+-+...
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~-~~~a~~~~~~~~d~vvv~-------GGDGTi~e 79 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDA-RHLVAAALAKGTDALVVV-------GGDGVISN 79 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHH-HHHHHHHHhcCCCEEEEE-------CCchHHHH
Confidence 36889999876432 3455677889999998774322 222 1122 2224456777763 34456666
Q ss_pred HHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCcee
Q 013932 101 IVDFVDSGHDLIVAADSNASDLIREVATECGVDF 134 (433)
Q Consensus 101 L~~Fid~GGNlLv~~~~~~~~~lr~ll~elGI~~ 134 (433)
..+-+..-+--|-..+.++ -+.|++++|+..
T Consensus 80 vv~~l~~~~~~lgiiP~GT---~NdfAr~lg~~~ 110 (306)
T PRK11914 80 ALQVLAGTDIPLGIIPAGT---GNDHAREFGIPT 110 (306)
T ss_pred HhHHhccCCCcEEEEeCCC---cchhHHHcCCCC
Confidence 6665543232232334443 356778888853
Done!