Query 013932
Match_columns 433
No_of_seqs 155 out of 298
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 19:47:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013932.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013932hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rht_A (gatase1)-like protein; 97.6 0.00049 1.7E-08 66.3 12.4 232 29-285 4-258 (259)
2 2gk3_A Putative cytoplasmic pr 96.6 0.025 8.7E-07 53.9 13.1 91 45-137 42-155 (256)
3 3soz_A ORF 245 protein, cytopl 95.0 0.013 4.5E-07 55.9 3.5 90 48-137 38-148 (248)
4 1t0b_A THUA-like protein; treh 94.3 0.1 3.6E-06 49.6 8.0 105 27-135 5-121 (252)
5 4e5v_A Putative THUA-like prot 93.0 0.41 1.4E-05 46.3 9.8 230 29-288 4-260 (281)
6 3fni_A Putative diflavin flavo 89.4 1.1 3.8E-05 39.0 7.9 107 28-137 3-120 (159)
7 2p9r_A Alpha-2-M, alpha-2-macr 89.2 1.4 4.9E-05 35.3 7.9 72 303-379 9-86 (102)
8 3f6r_A Flavodoxin; FMN binding 88.1 3 0.0001 35.1 9.7 103 30-137 2-122 (148)
9 3nrp_A Periplasmic protein-pro 88.1 0.96 3.3E-05 40.1 6.5 70 309-381 39-120 (160)
10 2o6f_A 34 kDa membrane antigen 87.7 1.1 3.8E-05 40.7 6.7 71 309-381 69-152 (189)
11 3hly_A Flavodoxin-like domain; 86.8 2.1 7.2E-05 37.2 8.1 104 31-137 2-115 (161)
12 2fz5_A Flavodoxin; alpha/beta 86.5 3.3 0.00011 34.0 8.8 98 32-136 2-113 (137)
13 5nul_A Flavodoxin; electron tr 86.1 1.6 5.4E-05 36.4 6.7 100 32-137 1-113 (138)
14 2zuv_A Lacto-N-biose phosphory 83.4 0.76 2.6E-05 49.5 4.0 91 43-137 466-570 (759)
15 3ff4_A Uncharacterized protein 83.1 3.9 0.00013 34.3 7.7 82 47-136 22-110 (122)
16 1ydg_A Trp repressor binding p 83.0 3.7 0.00013 36.8 8.1 105 29-137 6-152 (211)
17 2a5l_A Trp repressor binding p 79.8 7.3 0.00025 34.2 8.8 104 30-137 6-145 (200)
18 2q9u_A A-type flavoprotein; fl 78.2 5.6 0.00019 39.4 8.3 105 29-137 256-375 (414)
19 3tty_A Beta-GAL, beta-galactos 78.1 4 0.00014 44.1 7.5 99 27-136 394-516 (675)
20 1f4p_A Flavodoxin; electron tr 77.8 9.7 0.00033 31.7 8.6 101 31-137 2-121 (147)
21 2ohh_A Type A flavoprotein FPR 77.7 4.4 0.00015 39.8 7.3 105 28-136 255-375 (404)
22 2zki_A 199AA long hypothetical 75.4 10 0.00034 33.4 8.3 103 30-137 5-144 (199)
23 2vzf_A NADH-dependent FMN redu 74.9 5.4 0.00018 35.5 6.4 109 31-144 4-144 (197)
24 1ykg_A SIR-FP, sulfite reducta 70.7 7.6 0.00026 33.6 6.2 109 24-137 4-130 (167)
25 2ark_A Flavodoxin; FMN, struct 70.6 19 0.00064 31.5 8.9 100 30-137 5-125 (188)
26 3b6i_A Flavoprotein WRBA; flav 68.5 20 0.0007 31.1 8.7 103 31-137 3-141 (198)
27 1e5d_A Rubredoxin\:oxygen oxid 67.9 22 0.00074 34.7 9.6 105 29-137 252-369 (402)
28 1bvy_F Protein (cytochrome P45 64.5 24 0.00083 31.5 8.4 101 28-136 20-140 (191)
29 3pjl_A 34 kDa membrane antigen 63.9 29 0.001 31.8 8.6 70 310-381 93-175 (212)
30 3ej6_A Catalase-3; heme, hydro 61.7 40 0.0014 36.5 10.6 103 27-135 535-651 (688)
31 2hna_A Protein MIOC, flavodoxi 61.6 49 0.0017 27.4 9.4 100 30-137 2-119 (147)
32 2ds4_A Tripartite motif protei 60.7 32 0.0011 27.4 7.8 72 306-379 23-97 (113)
33 1ycg_A Nitric oxide reductase; 60.5 21 0.0007 34.9 7.8 106 29-137 251-368 (398)
34 3lzq_A P19 protein; copper bin 60.2 37 0.0013 29.8 8.3 71 309-381 37-125 (159)
35 1obo_A Flavodoxin; electron tr 59.4 34 0.0012 29.0 8.2 99 30-137 2-119 (169)
36 2d59_A Hypothetical protein PH 59.1 27 0.00091 29.6 7.3 83 47-135 40-128 (144)
37 1y81_A Conserved hypothetical 58.6 36 0.0012 28.7 8.0 84 47-137 32-122 (138)
38 3rgh_A Filamin-A; cell adhesio 56.6 21 0.00072 28.4 5.9 63 308-379 22-85 (100)
39 4hcj_A THIJ/PFPI domain protei 56.4 19 0.00065 31.8 6.1 85 26-110 5-103 (177)
40 1czn_A Flavodoxin; FMN binding 56.2 40 0.0014 28.6 8.1 100 30-137 1-119 (169)
41 2vrn_A Protease I, DR1199; cys 55.9 23 0.0008 30.8 6.6 87 26-112 6-112 (190)
42 2q62_A ARSH; alpha/beta, flavo 55.8 48 0.0016 30.8 9.1 106 28-137 33-171 (247)
43 2iuf_A Catalase; oxidoreductas 55.6 44 0.0015 36.1 9.7 104 27-136 527-654 (688)
44 2fex_A Conserved hypothetical 54.5 36 0.0012 29.7 7.7 97 30-132 2-112 (188)
45 1t5b_A Acyl carrier protein ph 53.8 45 0.0015 28.9 8.1 104 30-136 2-170 (201)
46 2amj_A Modulator of drug activ 53.4 55 0.0019 29.2 8.8 74 29-106 12-94 (204)
47 4e08_A DJ-1 beta; flavodoxin-l 52.5 28 0.00095 30.5 6.5 110 29-148 5-130 (190)
48 1t0i_A YLR011WP; FMN binding p 52.2 34 0.0012 29.7 7.1 103 31-137 2-150 (191)
49 2hr0_A Complement C3 beta chai 51.9 35 0.0012 36.0 8.3 70 303-378 113-189 (645)
50 1oi4_A Hypothetical protein YH 50.4 46 0.0016 29.3 7.7 85 28-112 22-122 (193)
51 1rtt_A Conserved hypothetical 50.3 40 0.0014 29.4 7.2 110 30-144 7-150 (193)
52 3ttv_A Catalase HPII; heme ori 48.2 30 0.001 37.7 7.0 102 26-133 597-711 (753)
53 1sqs_A Conserved hypothetical 48.1 34 0.0012 31.2 6.6 103 31-137 3-151 (242)
54 3fvw_A Putative NAD(P)H-depend 48.1 1.2E+02 0.0041 26.5 10.1 104 30-137 3-145 (192)
55 3l18_A Intracellular protease 46.5 25 0.00086 30.0 5.1 84 29-112 2-99 (168)
56 1iuk_A Hypothetical protein TT 46.0 39 0.0013 28.4 6.2 83 47-136 31-122 (140)
57 3uk7_A Class I glutamine amido 45.3 26 0.00088 34.6 5.7 44 24-67 200-243 (396)
58 2hpv_A FMN-dependent NADH-azor 43.0 53 0.0018 28.8 6.9 102 31-136 3-176 (208)
59 3eod_A Protein HNR; response r 42.8 45 0.0016 26.0 5.9 95 27-132 5-102 (130)
60 2fzv_A Putative arsenical resi 41.8 57 0.0019 31.1 7.2 107 28-137 57-196 (279)
61 2ab0_A YAJL; DJ-1/THIJ superfa 41.5 34 0.0012 30.5 5.4 38 30-67 3-40 (205)
62 3efe_A THIJ/PFPI family protei 40.4 81 0.0028 28.2 7.8 58 30-87 6-83 (212)
63 2b39_A C3; thioester, immune d 39.9 92 0.0032 37.0 10.1 70 303-378 134-210 (1661)
64 3kht_A Response regulator; PSI 39.8 79 0.0027 25.1 7.0 94 30-132 6-104 (144)
65 2di7_A BK158_1; beta-sandwich, 39.4 12 0.0004 31.6 1.7 30 350-379 77-106 (124)
66 2zay_A Response regulator rece 39.3 74 0.0025 25.3 6.8 94 28-132 7-105 (147)
67 3lcm_A SMU.1420, putative oxid 38.6 1.1E+02 0.0036 27.0 8.2 71 31-106 2-97 (196)
68 4dik_A Flavoprotein; TM0755, e 38.0 83 0.0028 31.5 8.1 107 28-137 264-385 (410)
69 2d7p_A Filamin-C; beta-sandwic 37.3 45 0.0015 27.1 5.0 61 307-379 24-87 (112)
70 2d7n_A Filamin-C; beta-sandwic 36.8 57 0.0019 25.7 5.4 46 333-379 22-68 (93)
71 3f2v_A General stress protein 36.8 79 0.0027 28.1 7.0 74 30-107 2-83 (192)
72 4hs4_A Chromate reductase; tri 36.8 1.7E+02 0.0057 25.9 9.2 108 30-144 7-151 (199)
73 2duw_A Putative COA-binding pr 36.4 61 0.0021 27.3 5.9 82 47-136 31-122 (145)
74 3ot1_A 4-methyl-5(B-hydroxyeth 36.4 62 0.0021 28.8 6.3 59 29-87 9-80 (208)
75 3k1y_A Oxidoreductase; structu 36.3 1.5E+02 0.0052 26.1 8.8 108 30-142 12-158 (191)
76 1k68_A Phytochrome response re 36.1 1.2E+02 0.0039 23.5 7.4 93 29-132 2-108 (140)
77 1vhq_A Enhancing lycopene bios 35.9 47 0.0016 30.2 5.4 37 30-66 7-48 (232)
78 3snk_A Response regulator CHEY 35.6 85 0.0029 24.6 6.5 95 30-132 15-110 (135)
79 3uk7_A Class I glutamine amido 35.2 55 0.0019 32.2 6.2 40 27-66 10-49 (396)
80 2d7m_A Filamin-C; beta-sandwic 35.0 79 0.0027 25.5 6.2 61 308-379 27-90 (115)
81 3gt7_A Sensor protein; structu 34.9 1.5E+02 0.0053 23.8 8.2 94 28-132 6-104 (154)
82 3hr4_A Nitric oxide synthase, 34.0 2.6E+02 0.0089 25.4 10.2 104 28-137 39-159 (219)
83 2rk3_A Protein DJ-1; parkinson 34.0 57 0.002 28.6 5.6 98 29-132 3-117 (197)
84 2dj4_A Filamin-B; beta-sandwic 34.0 65 0.0022 25.7 5.4 42 337-379 45-89 (108)
85 3gl9_A Response regulator; bet 33.6 1.6E+02 0.0055 22.6 7.9 92 30-132 3-99 (122)
86 3klb_A Putative flavoprotein; 33.4 1.4E+02 0.0047 25.3 7.8 57 75-135 75-139 (162)
87 3gfs_A FMN-dependent NADPH-azo 32.9 69 0.0024 27.3 5.8 63 76-144 61-137 (174)
88 3ha2_A NADPH-quinone reductase 32.7 88 0.003 27.4 6.5 107 31-145 2-144 (177)
89 3l3b_A ES1 family protein; ssg 32.3 56 0.0019 30.3 5.4 37 30-66 24-65 (242)
90 1rli_A Trp repressor binding p 32.2 1.1E+02 0.0038 25.9 7.1 57 76-136 69-152 (184)
91 1ka9_H Imidazole glycerol phos 31.9 2.1E+02 0.0073 24.8 9.1 71 31-112 4-79 (200)
92 3svl_A Protein YIEF; E. coli C 31.8 2.2E+02 0.0075 24.9 9.1 111 30-144 5-150 (193)
93 1k66_A Phytochrome response re 31.7 1.1E+02 0.0038 24.0 6.6 97 26-131 3-114 (149)
94 2e9j_A Filamin-B; beta-sandwic 31.4 33 0.0011 28.1 3.2 61 308-379 37-100 (119)
95 3m3p_A Glutamine amido transfe 31.2 1.4E+02 0.0048 27.6 8.0 99 29-136 3-105 (250)
96 3cu7_A Complement C5; Mg domai 30.7 72 0.0025 37.9 7.1 70 303-379 131-207 (1676)
97 1u9c_A APC35852; structural ge 30.2 1.7E+02 0.0058 25.9 8.2 38 30-67 6-53 (224)
98 2pln_A HP1043, response regula 28.9 66 0.0023 25.3 4.7 91 28-132 17-109 (137)
99 3n7t_A Macrophage binding prot 28.4 1.2E+02 0.004 28.1 6.9 37 30-66 10-58 (247)
100 3l7n_A Putative uncharacterize 28.4 1.3E+02 0.0046 27.1 7.2 95 31-135 2-106 (236)
101 2qxy_A Response regulator; reg 28.3 1.1E+02 0.0037 24.1 6.0 92 29-132 4-98 (142)
102 3v0r_A Major allergen ALT A 1; 28.2 98 0.0034 26.3 5.6 83 282-366 10-102 (133)
103 3jte_A Response regulator rece 28.0 1.3E+02 0.0045 23.6 6.4 94 30-132 4-100 (143)
104 1rw7_A YDR533CP; alpha-beta sa 27.9 1.1E+02 0.0037 27.9 6.6 37 30-66 4-52 (243)
105 2qip_A Protein of unknown func 27.8 56 0.0019 28.1 4.3 75 43-124 61-150 (165)
106 3r6w_A FMN-dependent NADH-azor 27.7 1.5E+02 0.0052 26.0 7.3 37 31-67 3-46 (212)
107 3lua_A Response regulator rece 27.6 1.3E+02 0.0046 23.5 6.4 94 29-132 4-104 (140)
108 2xvc_A ESCRT-III, SSO0910; cel 27.6 43 0.0015 24.5 2.8 32 96-136 10-41 (59)
109 3grc_A Sensor protein, kinase; 27.6 68 0.0023 25.3 4.5 69 29-107 6-74 (140)
110 3qe2_A CPR, P450R, NADPH--cyto 27.5 2.1E+02 0.0072 30.1 9.5 109 28-137 17-143 (618)
111 2rjn_A Response regulator rece 27.5 1.7E+02 0.0057 23.4 7.1 91 28-128 6-99 (154)
112 2ee9_A Filamin-B; beta-sandwic 27.0 87 0.003 24.8 4.9 46 333-379 30-76 (95)
113 3u7r_A NADPH-dependent FMN red 26.8 3.3E+02 0.011 23.9 12.3 103 30-137 3-140 (190)
114 3f5d_A Protein YDEA; unknow pr 26.6 1.5E+02 0.005 26.5 7.0 94 30-132 4-111 (206)
115 2dia_A Filamin-B; beta-sandwic 26.3 1.4E+02 0.0048 23.9 6.2 63 308-379 25-88 (113)
116 1d4a_A DT-diaphorase, quinone 25.8 2.6E+02 0.009 25.8 8.9 38 30-67 3-44 (273)
117 3hzh_A Chemotaxis response reg 25.8 1.2E+02 0.0041 24.6 5.9 92 31-132 38-134 (157)
118 3lte_A Response regulator; str 24.9 2.1E+02 0.007 22.0 7.0 93 29-132 6-102 (132)
119 1qkk_A DCTD, C4-dicarboxylate 24.6 1.8E+02 0.0062 23.2 6.8 93 29-132 3-98 (155)
120 1n57_A Chaperone HSP31, protei 24.0 1.2E+02 0.0041 28.7 6.2 39 29-67 48-100 (291)
121 3hv2_A Response regulator/HD d 23.8 2.2E+02 0.0076 22.7 7.2 92 29-131 14-108 (153)
122 3kto_A Response regulator rece 23.3 1.4E+02 0.0047 23.4 5.7 94 30-132 7-103 (136)
123 3gra_A Transcriptional regulat 23.2 1.1E+02 0.0038 27.0 5.5 60 29-88 5-81 (202)
124 4djd_C C/Fe-SP, corrinoid/iron 23.0 55 0.0019 33.5 3.7 63 102-165 281-343 (446)
125 2dmb_A Filamin-B; beta-sandwic 22.7 1.1E+02 0.0037 25.2 4.9 29 350-379 61-89 (124)
126 2pn5_A TEP1R, thioester-contai 21.9 1.8E+02 0.0062 33.4 8.2 71 303-378 107-184 (1325)
127 4gi5_A Quinone reductase; prot 21.9 1.2E+02 0.0041 28.8 5.7 35 28-62 21-59 (280)
128 2ab1_A Hypothetical protein; H 21.9 2E+02 0.0068 23.7 6.4 42 95-136 48-94 (122)
129 4b7l_A Filamin-B; structural p 21.9 1.1E+02 0.0038 29.9 5.6 62 307-379 269-335 (347)
130 4fxk_A Complement C4 beta chai 21.8 2.6E+02 0.0088 29.0 8.8 70 303-379 127-202 (656)
131 3f6p_A Transcriptional regulat 21.6 1.3E+02 0.0045 23.0 5.1 92 30-132 3-96 (120)
132 3i4a_A N(G),N(G)-dimethylargin 21.6 2.3E+02 0.0078 27.1 7.7 87 42-130 67-181 (308)
133 2h9a_A Carbon monoxide dehydro 21.5 58 0.002 33.3 3.5 65 100-165 278-342 (445)
134 4dad_A Putative pilus assembly 21.4 1.8E+02 0.0062 22.9 6.1 93 29-132 20-118 (146)
135 3p0r_A Azoreductase; structura 21.3 2.3E+02 0.0079 25.0 7.3 37 30-66 5-49 (211)
136 3tem_A Ribosyldihydronicotinam 21.2 49 0.0017 30.2 2.7 38 29-66 1-42 (228)
137 4e7p_A Response regulator; DNA 20.5 3.2E+02 0.011 21.6 7.5 91 31-132 22-117 (150)
138 2e0n_A Precorrin-2 C20-methylt 20.5 2.7E+02 0.0094 25.3 7.8 96 28-131 95-196 (259)
No 1
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=97.61 E-value=0.00049 Score=66.32 Aligned_cols=232 Identities=16% Similarity=0.160 Sum_probs=119.7
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCC
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG 108 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~G 108 (433)
-.|+|+| +++.....-..|.+.|++.||+|++..+.+... ....-..||.+|+.......+.. -..+.|.+||.+|
T Consensus 4 m~~vLiV-~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~--~~~~L~~yDvIIl~d~~~~~l~~-~~~~~L~~yV~~G 79 (259)
T 3rht_A 4 MTRVLYC-GDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLD--VGELLAKQDLVILSDYPAERMTA-QAIDQLVTMVKAG 79 (259)
T ss_dssp --CEEEE-ESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBC--SSHHHHTCSEEEEESCCGGGBCH-HHHHHHHHHHHTT
T ss_pred CceEEEE-CCCCchhHHHHHHHHHHhCCceEEEeccccccc--ChhHHhcCCEEEEcCCccccCCH-HHHHHHHHHHHhC
Confidence 3688888 555444555668889999999999986655421 11223456999997654433421 2338999999999
Q ss_pred CcEEEEeCCCCcH----HH--HHHHHHcCceecCCCCeEEEeccCccccCCCCCceEEeecccc--ccceeccCCccc--
Q 013932 109 HDLIVAADSNASD----LI--REVATECGVDFDEDPAAMVIDHINYAVSNFDGDHTLIASDDFI--KADVILGSKKIE-- 178 (433)
Q Consensus 109 GNlLv~~~~~~~~----~l--r~ll~elGI~~~p~~~~~VvDhf~~~~~~~~~~~~~i~~~~~i--~~~~i~~~~~~~-- 178 (433)
|.+++++++..-. .+ .+|.+-+++++.+. +..+ .+-. ..+..+... .+|+|+......
T Consensus 80 GgLi~~gG~~s~~g~~g~~~~t~L~~vLPv~~~~~-~~rv-~~~~----------g~~~~~~~~~g~~HPIt~gl~~~~~ 147 (259)
T 3rht_A 80 CGLVMLGGWESYHGLGGNWDQTLLAEVLPVDIKSA-DDRI-NFDQ----------PTLAIPAAINSVSHPILQNLPWEDR 147 (259)
T ss_dssp CEEEEECSTTSSSTTTTCGGGSGGGGTSSEECCSS-CCEE-ECSS----------CEEEEESSGGGGGSTTTTTSCTTTC
T ss_pred CeEEEecCccccccccCcccccchhhhCCcccccc-cccc-ccCC----------CccceeEEccCCCCccccCCCcccc
Confidence 9999888754321 22 24667778887775 3333 2111 111111122 257776432211
Q ss_pred Cceeeecee-EEecCCCceeEeee--EeCCcceecCCCCCCCCCCCCCCCceeeEEEEEecCCcEEEEEeccc-------
Q 013932 179 APVLFQGIG-HSLNPANSLVLKVL--SASSSAYSANPKSKLSNPPSLTGSAISLVSVVQARNNARILITGSLS------- 248 (433)
Q Consensus 179 ~~vl~~g~g-~~l~~~n~l~~pIL--~a~~tsys~~~~~~~~~~~~~~G~~~~Lv~alQ~~nnaRivv~GS~d------- 248 (433)
-|.+ .+.- +...+.+ .-++ +...+.|+-...+. .+ .+.......++++....|++..+|-.
T Consensus 148 ~p~~-~~~~~~~~~~~~---~vl~~~t~~~p~~sg~~~~~----~~-~~~~~~PlL~~~~~GkGRV~~lasD~~~~W~~~ 218 (259)
T 3rht_A 148 PPTI-GGLNRIAAKAKA---QTLLMARVWRPTFSLEHGKT----TW-EHADHHPLLVVGEAGTGRVAAFASDVAPHWVGG 218 (259)
T ss_dssp CCBC-SEEECCEECTTS---EEEEEEEEECCEEETTTTEE----EC-CEEEEEEEEEEEEETTEEEEEESSCSSTTTSGG
T ss_pred CCcc-cceEEEEeCCCC---eEEEeecccccccccccccc----cc-ccCCCceEEEEeccCCeEEEEEeCCCCcccccc
Confidence 1221 1111 1111122 2233 22335555433221 11 11222356777888999999998632
Q ss_pred ccc--Ccccc-cccCCcccccccccHHHHHHHhhcccCcC
Q 013932 249 MFS--NRSGV-QKAGSSIKHEKSGNEQFLTEISKWVFHER 285 (433)
Q Consensus 249 ffS--n~~~~-~~~~~~~~~~~~~N~~f~~~l~~W~F~e~ 285 (433)
|.. ++... +.++-..-.....-.+|-.+++.|+.+|.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~ 258 (259)
T 3rht_A 219 LVDWGDERVTSQAPGAGAIEVGNLYSQFFRQMLEWVAKST 258 (259)
T ss_dssp GGGCSSSEEEECCTTSCCEEEEHHHHHHHHHHHHHHHTC-
T ss_pred ccccccccccccccccccccCCCHHHHHHHHHHHHHhhcc
Confidence 111 00000 00000000011245679999999998875
No 2
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=96.59 E-value=0.025 Score=53.89 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=60.1
Q ss_pred hhhHHHHhhcCCcEEEEecCC----CCCcccccccccccCEEEEeCCCCCcCCC-----------CCCHHHHHHHHHCCC
Q 013932 45 HSLYFGSLTSRGFQLEFKLAD----DPNIGLQRYGQYLYDALVLFCPSVERFGG-----------SIDVASIVDFVDSGH 109 (433)
Q Consensus 45 ~S~F~~~L~~rGf~v~~~~~~----d~~~~L~~~ge~~yd~LII~~p~~~~~~~-----------~ls~~~L~~Fid~GG 109 (433)
...+.+.|+..|+++++..+. +-... ...-..||.||+.......+.+ .-..+.|.+|+.+||
T Consensus 42 ~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~--~~~L~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~GG 119 (256)
T 2gk3_A 42 ATWLLECLRKGGVDIDYMPAHTVQIAFPES--IDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGG 119 (256)
T ss_dssp CHHHHHHHHHTTCEEEEECHHHHHHCCCCS--HHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCceEEEEecccchhhCCcC--hhHHhcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhCC
Confidence 345888999999999987322 11000 1123457999998755443431 234599999999999
Q ss_pred cEEEEeCCCCc-------HHHH-HHHHHcCceecCC
Q 013932 110 DLIVAADSNAS-------DLIR-EVATECGVDFDED 137 (433)
Q Consensus 110 NlLv~~~~~~~-------~~lr-~ll~elGI~~~p~ 137 (433)
.+++++++..- ...+ ++.+-|++++.++
T Consensus 120 gll~igG~~s~~~~~g~g~~~~t~l~~vLPv~~~~~ 155 (256)
T 2gk3_A 120 GLLMIGGYLSFMGIEAKANYKNTVLAEVLPVIMLDG 155 (256)
T ss_dssp EEEEECSTTSSSCGGGTTCGGGSTTGGGSSEEECSS
T ss_pred EEEEECChhhhhccccCCccccCChHhhCCeeeccC
Confidence 99988876432 1112 4677789999875
No 3
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=94.99 E-value=0.013 Score=55.94 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=63.1
Q ss_pred HHHHhhcCCcEEEEecCCCCC--cccccccccccCEEEEeCCCCCcC--C---------CCCCHHHHHHHHHCCCcEEEE
Q 013932 48 YFGSLTSRGFQLEFKLADDPN--IGLQRYGQYLYDALVLFCPSVERF--G---------GSIDVASIVDFVDSGHDLIVA 114 (433)
Q Consensus 48 F~~~L~~rGf~v~~~~~~d~~--~~L~~~ge~~yd~LII~~p~~~~~--~---------~~ls~~~L~~Fid~GGNlLv~ 114 (433)
+.+.|+..|++|++...++.. +.....+-..||.+|+.......+ + ..-..+.|.+||.+||-++++
T Consensus 38 ~~~aL~~~~~~V~~i~~~~~~~~fP~~~~~L~~yDvIIl~d~~~~~~l~~~~~~~~~~~~~~~~~~l~~~V~~GGgLi~~ 117 (248)
T 3soz_A 38 LLSCLRQGNIDVDYMPAHIVQTRFPQTAEALACYDAIVISDIGSNTFLLQNRTFYNMDIIPDALQLIADYVAEGGGLLMI 117 (248)
T ss_dssp HHHHHTTTTCEEEEEETTHHHHSCCCSHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHhcCCceeEEeCchhhhhhCCCChHHHhcCCEEEEcCCCcchhccCccccccccCCHHHHHHHHHHHHhCCEEEEE
Confidence 788899999999998665521 112234446779999998876444 1 112359999999999999988
Q ss_pred eCCCC------cHHHH--HHHHHcCceecCC
Q 013932 115 ADSNA------SDLIR--EVATECGVDFDED 137 (433)
Q Consensus 115 ~~~~~------~~~lr--~ll~elGI~~~p~ 137 (433)
+++.. ..... +|.+-|++++.+.
T Consensus 118 gG~~~f~g~~~~g~~~~t~l~~vLPV~~~~~ 148 (248)
T 3soz_A 118 GGYLSFTGIEAKANYKNTVLAEVLPVDMLDV 148 (248)
T ss_dssp CSTTSSSCGGGCSCGGGSTHHHHSSEECCSS
T ss_pred cCchhccccccccccccCcHHHhCCcccccc
Confidence 88753 12222 4888899999764
No 4
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=94.31 E-value=0.1 Score=49.64 Aligned_cols=105 Identities=23% Similarity=0.204 Sum_probs=63.5
Q ss_pred CCCCeEEEEEcCcccc-----------cchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCC-CCCcCCC
Q 013932 27 PTDRRVLVLVDDFAIK-----------SSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCP-SVERFGG 94 (433)
Q Consensus 27 ~~~~r~LVl~d~~~~~-----------~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p-~~~~~~~ 94 (433)
+...|+||.-+.+-++ .-+..+.+.|++.||+|++...+|..-.+...--..||.||++.. +...+..
T Consensus 5 ~~~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~~~~l~~ 84 (252)
T 1t0b_A 5 TTPIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAHDEVKD 84 (252)
T ss_dssp -CCCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCGGGSCH
T ss_pred CCCcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCCCCcCCH
Confidence 3457999998765332 123456899999999999975444321122222346799998632 3232311
Q ss_pred CCCHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceec
Q 013932 95 SIDVASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFD 135 (433)
Q Consensus 95 ~ls~~~L~~Fid~GGNlLv~~~~~~~~~lr~ll~elGI~~~ 135 (433)
--.+.|.+|+++||.++.+=..... ..+.+-+|..+.
T Consensus 85 -~~~~al~~~V~~GgG~vgiH~a~~~---~~y~~llGg~f~ 121 (252)
T 1t0b_A 85 -EVVERVHRRVLEGMGLIVLHSGHFS---KIFKKLMGTTCN 121 (252)
T ss_dssp -HHHHHHHHHHHTTCEEEEEGGGGGS---HHHHHHHCSCCC
T ss_pred -HHHHHHHHHHHcCCCEEEEcccCCc---HHHHhhhCCccc
Confidence 1237899999999999865332212 345566776654
No 5
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=93.04 E-value=0.41 Score=46.30 Aligned_cols=230 Identities=14% Similarity=0.136 Sum_probs=113.0
Q ss_pred CCeEEEEEc--CcccccchhhHHHHhhcCC-cEEEEecC----CCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHH
Q 013932 29 DRRVLVLVD--DFAIKSSHSLYFGSLTSRG-FQLEFKLA----DDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASI 101 (433)
Q Consensus 29 ~~r~LVl~d--~~~~~~~~S~F~~~L~~rG-f~v~~~~~----~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L 101 (433)
.-|+||+-- .+........+.+.|++.| |+|+.... +|. +++...-..||.||+.. ....+. .--.+.|
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~--~~f~~~L~~~D~vV~~~-~~~~l~-~~~~~~l 79 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDM--SGFVLDFSPYQLVVLDY-NGDSWP-EETNRRF 79 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCC--TTCCCCCTTCSEEEECC-CSSCCC-HHHHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccch--hHHhhhhhcCCEEEEeC-CCCcCC-HHHHHHH
Confidence 357888853 2334445567888999999 99998632 122 22322345689999644 333231 1223889
Q ss_pred HHHHHCCCcEEEEeCC-CCcHHHHHHHHHcCc--------------eecCCCCeEEEeccCcc-ccCCCCCceEEeeccc
Q 013932 102 VDFVDSGHDLIVAADS-NASDLIREVATECGV--------------DFDEDPAAMVIDHINYA-VSNFDGDHTLIASDDF 165 (433)
Q Consensus 102 ~~Fid~GGNlLv~~~~-~~~~~lr~ll~elGI--------------~~~p~~~~~VvDhf~~~-~~~~~~~~~~i~~~~~ 165 (433)
.+|+++||.++.+=.. ..-.....+.+-+|+ ++.+ |-.|-|+..-. ..-+. .++..+.. .
T Consensus 80 ~~yV~~Ggglv~~H~a~~~~~~w~~y~~liG~g~f~~r~~~~gp~~~~~~--g~~v~~~~~g~~~~Hp~-~~~~~v~v-~ 155 (281)
T 4e5v_A 80 LEYVQNGGGVVIYHAADNAFSKWPEFNRICALGGWEGRNENSGPYVYWKD--GKLVKDSSAGPGGSHGR-QHEYVLNG-R 155 (281)
T ss_dssp HHHHHTTCEEEEEGGGGGSCTTCHHHHHHHSCBCCTTCSGGGCCEEEEET--TEEEEECCSCCSCBCCS-CEEEEEEE-S
T ss_pred HHHHHcCCCEEEEecccccCCCCHHHHHheecccccccccccccceeecc--cccccccccccccCCCC-CceEEEEE-c
Confidence 9999999999966431 111112344445562 2333 33455543111 00000 11222211 1
Q ss_pred cccceeccCCcccCc-eeeeceeEEecCCCceeEeeeEeCCcceecCCCCCCCCCCCCCCCceeeEEEEEecCCcEEEEE
Q 013932 166 IKADVILGSKKIEAP-VLFQGIGHSLNPANSLVLKVLSASSSAYSANPKSKLSNPPSLTGSAISLVSVVQARNNARILIT 244 (433)
Q Consensus 166 i~~~~i~~~~~~~~~-vl~~g~g~~l~~~n~l~~pIL~a~~tsys~~~~~~~~~~~~~~G~~~~Lv~alQ~~nnaRivv~ 244 (433)
-.+|||+..-...-. +.=..-..... .++.+.+|+++...++. ...| ....++-.+...++|+..+
T Consensus 156 ~~~HPit~Gl~~~~~~~~dE~Y~~~~~-p~~~~~VL~t~~~~~~~-----------~~~g-~~~Pv~W~~~~g~GRvFyt 222 (281)
T 4e5v_A 156 DKVHPVVKGLPLKWRHAKDELYDRMRG-PGNIRDILYTAYSDKET-----------NGSG-REEPLVFTVDYGNARIFHT 222 (281)
T ss_dssp CSSSTTTTTSCSEEEEEEECCCBSCBS-CCCEEEEEEEEECCGGG-----------TCCS-SEEEEEEEECSTTCEEEEE
T ss_pred CCCCchhhCCCCcccccccCCcccccC-CCCCCEEEEEEeccCcC-----------CCCC-CcceEEEEEEeCCeeEEEE
Confidence 135777633111000 00011111111 22457777776544321 1112 1235555566778998777
Q ss_pred ecccc---ccCcccccccCCcccccccccHHHHHHHhhcccCcCceE
Q 013932 245 GSLSM---FSNRSGVQKAGSSIKHEKSGNEQFLTEISKWVFHERGHL 288 (433)
Q Consensus 245 GS~df---fSn~~~~~~~~~~~~~~~~~N~~f~~~l~~W~F~e~gvL 288 (433)
.=+.- ..+.. ......=++++.+-+.|+...+.-+
T Consensus 223 ~lGH~~~~w~~~~---------~~~~p~f~~ll~~gi~Waa~g~~~~ 260 (281)
T 4e5v_A 223 MLGHAGATTEDNI---------AMQCTGFQVLLLRGAEWAATGKVTQ 260 (281)
T ss_dssp CCCCCCSSSSSCH---------HHHBHHHHHHHHHHHHHHHHSCCCC
T ss_pred CCCCcccccCCcc---------ccCCHHHHHHHHHHHHHHhCCCCCC
Confidence 65543 11110 0123344678899999998765433
No 6
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=89.36 E-value=1.1 Score=39.04 Aligned_cols=107 Identities=7% Similarity=-0.007 Sum_probs=66.2
Q ss_pred CCCeEEEEEcCc--ccccchhhHHHHhhcCCcEEEEecCCCC-CcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHH
Q 013932 28 TDRRVLVLVDDF--AIKSSHSLYFGSLTSRGFQLEFKLADDP-NIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDF 104 (433)
Q Consensus 28 ~~~r~LVl~d~~--~~~~~~S~F~~~L~~rGf~v~~~~~~d~-~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~F 104 (433)
..++++|+|.+. +.+.--....+.|++.|.+++.....+. +..-.......||.||+.+|... +.+..+.+.+.
T Consensus 3 ~~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~---g~~p~~~~l~~ 79 (159)
T 3fni_A 3 AETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIGMSPAA---SAASIQGALST 79 (159)
T ss_dssp CCCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEECCBTT---SHHHHHHHHHH
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEEcCcCC---CCccHHHHHHH
Confidence 357899999875 2233334577888899999887655443 32211122344799999999764 32332334444
Q ss_pred HH----CCCcEEEEeCC----CCcHHHHHHHHHcCceecCC
Q 013932 105 VD----SGHDLIVAADS----NASDLIREVATECGVDFDED 137 (433)
Q Consensus 105 id----~GGNlLv~~~~----~~~~~lr~ll~elGI~~~p~ 137 (433)
+. +|-.+.+.++. .....++..++++|+.+...
T Consensus 80 l~~~~~~~k~va~fgs~g~~~~a~~~l~~~l~~~G~~~v~~ 120 (159)
T 3fni_A 80 ILGSVNEKQAVGIFETGGGDDEPIDPLLSKFRNLGLTTAFP 120 (159)
T ss_dssp HHHHCCTTSEEEEECCSSSCBCCHHHHHHHHHHTTCEESSS
T ss_pred HHhhcccCCEEEEEEcCCCCcHHHHHHHHHHHHCCCEEecC
Confidence 43 34444455542 23478899999999998764
No 7
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=89.23 E-value=1.4 Score=35.26 Aligned_cols=72 Identities=14% Similarity=0.252 Sum_probs=52.7
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeeccCCCeEEEEEEeCce----EeeccccCCCceEEEEEecCCc--eeeeEEEEe
Q 013932 303 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY----VLKTLSTDQKGHYSAEFKVPDV--YGVFQFKVE 376 (433)
Q Consensus 303 ~~~~Y~i~d~v~y~i~i~e~~~~~W~P~~~~diQlEf~mldPy----~R~~l~~~~~~~y~~~f~~PD~--hGvf~f~v~ 376 (433)
+...||=.|.|.|.+-+- +.++.|... .-+.+...||- .|........|.|+..|+||+. -|.|+.++.
T Consensus 9 Dr~iYrPGetV~~~~~~~---~~~~~p~~~--~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~ 83 (102)
T 2p9r_A 9 DKSIYKPGQTVKFRVVSM---DENFHPLNE--LIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQ 83 (102)
T ss_dssp SCSEECTTCEEEEEEEEE---CGGGCBCCC--EEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEE
T ss_pred CCcccCCCCEEEEEEEEE---CCCCcCCCC--CceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEE
Confidence 345799999999998774 456778643 22455556984 2333444578999999999997 699999998
Q ss_pred eee
Q 013932 377 YQR 379 (433)
Q Consensus 377 Y~R 379 (433)
+..
T Consensus 84 ~~~ 86 (102)
T 2p9r_A 84 KKS 86 (102)
T ss_dssp CTT
T ss_pred ECC
Confidence 853
No 8
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=88.15 E-value=3 Score=35.08 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=64.9
Q ss_pred CeEEEEEcCcc--cccchhhHHHHhhcCCcEEEEecCCCCCccccccccc-ccCEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013932 30 RRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQY-LYDALVLFCPSVERFGGSIDVASIVDFVD 106 (433)
Q Consensus 30 ~r~LVl~d~~~--~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~-~yd~LII~~p~~~~~~~~ls~~~L~~Fid 106 (433)
.|++|++.+.. .+.-=..+.+.|+++|++++....++.+.. ... .||.+|+..|....-.+.+ +..+.+|++
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~----~l~~~~d~ii~g~pty~~~~G~~-p~~~~~fl~ 76 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAE----NLADGYDAVLFGCSAWGMEDLEM-QDDFLSLFE 76 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCT----TTTTTCSEEEEEECEECSSSCEE-CHHHHHHHT
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHh----HhcccCCEEEEEecccCCCCCCC-cHHHHHHHH
Confidence 47899997742 233333467788899999988755554221 122 6799999999754100222 356677776
Q ss_pred C-------CCcEEEEeC--CC------CcHHHHHHHHHcCceecCC
Q 013932 107 S-------GHDLIVAAD--SN------ASDLIREVATECGVDFDED 137 (433)
Q Consensus 107 ~-------GGNlLv~~~--~~------~~~~lr~ll~elGI~~~p~ 137 (433)
. |-.+.+.+. .. ....++..++++|...-..
T Consensus 77 ~l~~~~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~ 122 (148)
T 3f6r_A 77 EFDRIGLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAE 122 (148)
T ss_dssp TGGGTCCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSC
T ss_pred HhhccCCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeec
Confidence 4 344444432 21 1578899999999998865
No 9
>3nrp_A Periplasmic protein-probably involved in high-AFF transport; immunoglobulin-like fold, iron transporter, copper binding; 1.60A {Escherichia coli} PDB: 3nrq_A
Probab=88.14 E-value=0.96 Score=40.07 Aligned_cols=70 Identities=19% Similarity=0.337 Sum_probs=43.8
Q ss_pred eCCceEEEEEEEEEeC-------CeeeeccCCCeEEEEEEeC--ceEeecc---ccCCCceEEEEEecCCceeeeEEEEe
Q 013932 309 INDDLEYSVEIYEWSG-------TSWEPYVSDDVQVQFYMMS--PYVLKTL---STDQKGHYSAEFKVPDVYGVFQFKVE 376 (433)
Q Consensus 309 i~d~v~y~i~i~e~~~-------~~W~P~~~~diQlEf~mld--Py~R~~l---~~~~~~~y~~~f~~PD~hGvf~f~v~ 376 (433)
=.++|+-+++|....+ |.|+||- +|..|++..| .-..-++ ...+.-+|-.++|+|.. |-|+-++.
T Consensus 39 ~~sdiHLEAdI~a~e~n~~Gf~~G~~vPyL--~v~y~i~~~~~~~v~~g~~mPMvA~dGpHYG~NvkL~G~-G~Y~v~~~ 115 (160)
T 3nrp_A 39 AKADVHLEADIHAVEGNKNGFGAGEWIPYL--TISYTLVNNDTGEKQEGTFMPMVASDGPHYGANIKMMGV-GNYKVTYH 115 (160)
T ss_dssp GGCSEEEEEEEEECTTCSSSCCTTCBCCSC--EEEEEEEETTTCCEEEEECEEEEETTEEEEEEEECCCSS-EEEEEEEE
T ss_pred ccCCeEEEEEeeccccCcCcCcCCCCCCCc--eeEEEEEeCCCCeEEEeeccceecCCCCccccccCCCCC-ccEEEEEE
Confidence 4688999999998876 8999994 5777777543 2222222 11223356666777544 66666555
Q ss_pred eeecc
Q 013932 377 YQRLG 381 (433)
Q Consensus 377 Y~R~G 381 (433)
..-|+
T Consensus 116 I~pPs 120 (160)
T 3nrp_A 116 IEPPS 120 (160)
T ss_dssp EECGG
T ss_pred ECCCc
Confidence 54443
No 10
>2o6f_A 34 kDa membrane antigen; IG-fold, syphilis, metal-ION binding, dimer, membrane protei protein binding; 1.63A {Treponema pallidum} PDB: 2o6d_A 2o6e_A 2o6c_A
Probab=87.74 E-value=1.1 Score=40.69 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=44.4
Q ss_pred eCCceEEEEEEEEEe--------CCeeeeccCCCeEEEEEEeC-ce--Eeec--cccCCCceEEEEEecCCceeeeEEEE
Q 013932 309 INDDLEYSVEIYEWS--------GTSWEPYVSDDVQVQFYMMS-PY--VLKT--LSTDQKGHYSAEFKVPDVYGVFQFKV 375 (433)
Q Consensus 309 i~d~v~y~i~i~e~~--------~~~W~P~~~~diQlEf~mld-Py--~R~~--l~~~~~~~y~~~f~~PD~hGvf~f~v 375 (433)
=.++|+-+++|.... .|.|+||- .|+.+.+..+ .. .++. |...+.-+|-.+.||+..-|-|+-++
T Consensus 69 ~~sDiHLEADIha~~~~n~~Gf~~G~wvPyL--~V~~~i~k~g~~~v~~gtfmPM~A~DGPHYG~NvkL~G~~G~Y~vt~ 146 (189)
T 2o6f_A 69 EEADCHIEADIHANEAGKDLGYGVGDFVPYL--RVVAFLQKHGSEKVQKVMFAPMNAGDGPHYGANVKFEEGLGTYKVRF 146 (189)
T ss_dssp TTCSEEEEEEEEECGGGGGGTCCTTSBCCSC--EEEEEEEETTCCCCEEEECEEEEETTEEEEEEEECCTTCSEEEEEEE
T ss_pred ccCceEEEEEcchhhcCCccccccCCCcCce--EEEEEEEeCCCceEEEEeccccccCCCcccccccccCCCCccEEEEE
Confidence 367899999999877 78999985 5666666665 11 1222 12233345666777655446666665
Q ss_pred eeeecc
Q 013932 376 EYQRLG 381 (433)
Q Consensus 376 ~Y~R~G 381 (433)
...-|+
T Consensus 147 ~I~pP~ 152 (189)
T 2o6f_A 147 EIAAPS 152 (189)
T ss_dssp EEECCC
T ss_pred EEcCCC
Confidence 555443
No 11
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=86.82 E-value=2.1 Score=37.15 Aligned_cols=104 Identities=13% Similarity=-0.039 Sum_probs=63.5
Q ss_pred eEEEEEcCc--ccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH--
Q 013932 31 RVLVLVDDF--AIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD-- 106 (433)
Q Consensus 31 r~LVl~d~~--~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid-- 106 (433)
|++|+|.+. +.+.-=....+.|++.|.+++.....+.+..-.......||.|||.+|... +....+.+.+.+.
T Consensus 2 kv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~---g~~p~~~fl~~l~~~ 78 (161)
T 3hly_A 2 SVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLGTPPSQ---PSEAVATALSTIFAA 78 (161)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEECCBSS---CCHHHHHHHHHHHHH
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEEcCCcC---CchhHHHHHHHHHhh
Confidence 678888775 223333457788889999988765554432211112245799999999763 3233233444332
Q ss_pred --CCCcEEEEeCC----CCcHHHHHHHHHcCceecCC
Q 013932 107 --SGHDLIVAADS----NASDLIREVATECGVDFDED 137 (433)
Q Consensus 107 --~GGNlLv~~~~----~~~~~lr~ll~elGI~~~p~ 137 (433)
+|-.+.+.+.. ...+.++.+++++|+.+..+
T Consensus 79 ~l~gk~v~~fgs~g~~g~a~~~l~~~l~~~G~~~v~~ 115 (161)
T 3hly_A 79 AHNKQAIGLFDSYGGDDEPIDALLAQFRNLGLHTAFP 115 (161)
T ss_dssp CCTTSEEEEECCCCSSBCCHHHHHHHHHHTTCEESSS
T ss_pred hhCCCEEEEEEcCCCCcHHHHHHHHHHHHCCCEEecC
Confidence 34445555532 23578899999999998754
No 12
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=86.55 E-value=3.3 Score=34.03 Aligned_cols=98 Identities=13% Similarity=0.111 Sum_probs=59.8
Q ss_pred EEEEEcCcc--cccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHH-HHHHHHHC-
Q 013932 32 VLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVA-SIVDFVDS- 107 (433)
Q Consensus 32 ~LVl~d~~~--~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~-~L~~Fid~- 107 (433)
+||++.+.. .+.--..+.+.|+++|++++....++.+. .....||.+||..|.-. +...++ .+.+|++.
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~----~~l~~~d~vi~g~p~y~---~~~~~~~~~~~fl~~l 74 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNV----DDVASKDVILLGCPAMG---SEELEDSVVEPFFTDL 74 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCCH----HHHHTCSEEEEECCCBT---TTBCCHHHHHHHHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCCH----HHHhcCCEEEEEccccC---CCCCCHHHHHHHHHHh
Confidence 577776642 12233346677888899998765554322 12345799999999653 224444 46777764
Q ss_pred -----CCcEEEEeC--CC---CcHHHHHHHHHcCceecC
Q 013932 108 -----GHDLIVAAD--SN---ASDLIREVATECGVDFDE 136 (433)
Q Consensus 108 -----GGNlLv~~~--~~---~~~~lr~ll~elGI~~~p 136 (433)
|-.+.+.+. .. ..+.++..+.++|..+.+
T Consensus 75 ~~~l~~k~~~~~~t~g~~~~~~~~~l~~~l~~~g~~~~~ 113 (137)
T 2fz5_A 75 APKLKGKKVGLFGSYGWGSGEWMDAWKQRTEDTGATVIG 113 (137)
T ss_dssp GGGCSSCEEEEEEEESSCCSHHHHHHHHHHHHTTCEEEE
T ss_pred hhhcCCCEEEEEEecCCCCchHHHHHHHHHHHCCCEEcC
Confidence 445554432 21 236777888888988773
No 13
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=86.10 E-value=1.6 Score=36.41 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=61.5
Q ss_pred EEEEEcCc--ccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCC---CHHHHHHHHH
Q 013932 32 VLVLVDDF--AIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSI---DVASIVDFVD 106 (433)
Q Consensus 32 ~LVl~d~~--~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l---s~~~L~~Fid 106 (433)
++|+|.+. +.+.--....+.|+++|++++....++.+.. ....||.+||..|... ++.. ..+.+.+.+.
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~----~l~~~d~iiig~pty~--~g~~p~~~~~~fl~~l~ 74 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNID----ELLNEDILILGCSAMT--DEVLEESEFEPFIEEIS 74 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHH----HHTTCSEEEEEECCBT--TTBCCTTTHHHHHHHHG
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCCHH----HHhhCCEEEEEcCccC--CCCCChHHHHHHHHHHH
Confidence 36777664 2233334577888999999987654443221 2346799999999754 1211 3455555554
Q ss_pred ---CCCcEEEEeC--CC---CcHHHHHHHHHcCceecCC
Q 013932 107 ---SGHDLIVAAD--SN---ASDLIREVATECGVDFDED 137 (433)
Q Consensus 107 ---~GGNlLv~~~--~~---~~~~lr~ll~elGI~~~p~ 137 (433)
+|-.+.+.+. .. ..+.++..++++|..+-..
T Consensus 75 ~~l~~k~~~~f~t~g~~~~~a~~~l~~~l~~~G~~~v~~ 113 (138)
T 5nul_A 75 TKISGKKVALFGSYGWGDGKWMRDFEERMNGYGCVVVET 113 (138)
T ss_dssp GGCTTCEEEEEEEESSSCSHHHHHHHHHHHHTTCEECSC
T ss_pred hhcCCCEEEEEEecCCCCChHHHHHHHHHHHCCCEEECC
Confidence 4556665443 21 2467888999999998753
No 14
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=83.44 E-value=0.76 Score=49.47 Aligned_cols=91 Identities=20% Similarity=0.269 Sum_probs=62.8
Q ss_pred cchhh--HHHHhhcCCcEEEEecCCCCCccccccc-ccccCEEEEeCCCCCcCCCC-C--C---HHHHHHHHHCCCcEEE
Q 013932 43 SSHSL--YFGSLTSRGFQLEFKLADDPNIGLQRYG-QYLYDALVLFCPSVERFGGS-I--D---VASIVDFVDSGHDLIV 113 (433)
Q Consensus 43 ~~~S~--F~~~L~~rGf~v~~~~~~d~~~~L~~~g-e~~yd~LII~~p~~~~~~~~-l--s---~~~L~~Fid~GGNlLv 113 (433)
+.||. +.++|...+++|++..-+|. ...+ -..||.||-.......+.+. . + .+.|++|+.+||.++-
T Consensus 466 q~ysy~GilEALsg~~~dV~FIsfdDI----~e~e~L~d~DVIIn~G~A~TalSgg~~W~~p~~~~aLR~fV~~GGgLIg 541 (759)
T 2zuv_A 466 QTYSYYGILESLSGMRVNVRFISFDDV----LAHGIDSDIDVIINGGPVDTAFTGGDVWTNPKLVETVRAWVRGGGAFVG 541 (759)
T ss_dssp TTHHHHHHHHHHHTSSSEEEEEEHHHH----HHHCCCTTCCEEEEEECTTSTTTCGGGGGCHHHHHHHHHHHHTTCEEEE
T ss_pred ccccHHHHHHHHhcCCCceEEecHHHh----ccccccccCCEEEecCcchhcccCccccCCHHHHHHHHHHHHcCCcEEE
Confidence 34455 99999999999999844432 2213 36679999666443334331 1 1 2889999999999998
Q ss_pred EeCCCCc-----HHHHHHHHHcCceecCC
Q 013932 114 AADSNAS-----DLIREVATECGVDFDED 137 (433)
Q Consensus 114 ~~~~~~~-----~~lr~ll~elGI~~~p~ 137 (433)
++++..- .....|+.=||++..++
T Consensus 542 VGepSsfqg~g~gryFqLADVLGVd~e~g 570 (759)
T 2zuv_A 542 VGEPSSAPRFQTGRFFQLADVIGVDEERY 570 (759)
T ss_dssp EESTTEEEEEETTEEETTHHHHSEEECCS
T ss_pred eCCccccccccCcccccHHhhcCcccccC
Confidence 8887521 12234889999999997
No 15
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=83.06 E-value=3.9 Score=34.33 Aligned_cols=82 Identities=11% Similarity=0.109 Sum_probs=57.5
Q ss_pred hHHHHhhcCCcEEEEecCCCCCc-------ccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeCCCC
Q 013932 47 LYFGSLTSRGFQLEFKLADDPNI-------GLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNA 119 (433)
Q Consensus 47 ~F~~~L~~rGf~v~~~~~~d~~~-------~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GGNlLv~~~~~~ 119 (433)
..++.|.+.||+|-...|+-.++ +|.+-.+ -|..+|+-|... .++.+.+-.+.|=..+|+.....
T Consensus 22 ~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~--vDlavi~~p~~~------v~~~v~e~~~~g~k~v~~~~G~~ 93 (122)
T 3ff4_A 22 LAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEG--VDTVTLYINPQN------QLSEYNYILSLKPKRVIFNPGTE 93 (122)
T ss_dssp HHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTT--CCEEEECSCHHH------HGGGHHHHHHHCCSEEEECTTCC
T ss_pred HHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCC--CCEEEEEeCHHH------HHHHHHHHHhcCCCEEEECCCCC
Confidence 46778888999988777765432 1111122 488888887544 45667777788866667655555
Q ss_pred cHHHHHHHHHcCceecC
Q 013932 120 SDLIREVATECGVDFDE 136 (433)
Q Consensus 120 ~~~lr~ll~elGI~~~p 136 (433)
.+.+.+.+++.||.+-+
T Consensus 94 ~~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 94 NEELEEILSENGIEPVI 110 (122)
T ss_dssp CHHHHHHHHHTTCEEEE
T ss_pred hHHHHHHHHHcCCeEEC
Confidence 78999999999999874
No 16
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=82.99 E-value=3.7 Score=36.78 Aligned_cols=105 Identities=10% Similarity=0.087 Sum_probs=64.6
Q ss_pred CCeEEEEEcCcc--cccchhhHHHHhhcCCcEEEEecCCCC--------------------Cc-ccccccccccCEEEEe
Q 013932 29 DRRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDP--------------------NI-GLQRYGQYLYDALVLF 85 (433)
Q Consensus 29 ~~r~LVl~d~~~--~~~~~S~F~~~L~~rGf~v~~~~~~d~--------------------~~-~L~~~ge~~yd~LII~ 85 (433)
-.|+||++-+.. .+..-..+.+.|++.|.+++.....+. +. .-.......+|.|||.
T Consensus 6 mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~g 85 (211)
T 1ydg_A 6 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFS 85 (211)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEE
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEE
Confidence 358999997751 123334577888889999987655442 11 1112234457999999
Q ss_pred CCCCCcCCCCCCHHHHHHHHHC-----------CCcEEEE--eCCC---C---cHHHHHHHHHcCceecCC
Q 013932 86 CPSVERFGGSIDVASIVDFVDS-----------GHDLIVA--ADSN---A---SDLIREVATECGVDFDED 137 (433)
Q Consensus 86 ~p~~~~~~~~ls~~~L~~Fid~-----------GGNlLv~--~~~~---~---~~~lr~ll~elGI~~~p~ 137 (433)
+|.-- +.++ ..++.|+|+ |..+.++ .+.. . .+.++.++..+|+.+.+.
T Consensus 86 sP~y~---~~~~-~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~ 152 (211)
T 1ydg_A 86 SPTRF---GGAT-SQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPP 152 (211)
T ss_dssp EEEET---TEEC-HHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCC
T ss_pred cCccc---cCcc-HHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCC
Confidence 99654 3233 447777776 3333332 2221 1 246888899999988875
No 17
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=79.78 E-value=7.3 Score=34.17 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=62.6
Q ss_pred CeEEEEEcCcc--cccchhhHHHHhhcCCcEEEEecCCCCCc---------------ccccccccccCEEEEeCCCCCcC
Q 013932 30 RRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNI---------------GLQRYGQYLYDALVLFCPSVERF 92 (433)
Q Consensus 30 ~r~LVl~d~~~--~~~~~S~F~~~L~~rGf~v~~~~~~d~~~---------------~L~~~ge~~yd~LII~~p~~~~~ 92 (433)
.|+||++-+.. .+..-..+.+.|++.|++++.....+... .........+|.|||..|.--
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~-- 83 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRF-- 83 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECBT--
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChhc--
Confidence 48999997751 12223347788888999998764444100 011223446799999999654
Q ss_pred CCCCCHHHHHHHHHC-----------CCcEEEEeC-C---CC----cHHHHHHHHHcCceecCC
Q 013932 93 GGSIDVASIVDFVDS-----------GHDLIVAAD-S---NA----SDLIREVATECGVDFDED 137 (433)
Q Consensus 93 ~~~ls~~~L~~Fid~-----------GGNlLv~~~-~---~~----~~~lr~ll~elGI~~~p~ 137 (433)
+.+ +..+++|+|. |..+.+.+. . +. .+.++.++.++|+.+.+.
T Consensus 84 -~~~-~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~ 145 (200)
T 2a5l_A 84 -GNM-ASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGI 145 (200)
T ss_dssp -TBC-CHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred -cCc-cHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECC
Confidence 334 3456777775 344443332 1 11 135778888899998875
No 18
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=78.21 E-value=5.6 Score=39.39 Aligned_cols=105 Identities=13% Similarity=0.201 Sum_probs=65.8
Q ss_pred CCeEEEEEcCcc--cccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013932 29 DRRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD 106 (433)
Q Consensus 29 ~~r~LVl~d~~~--~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid 106 (433)
-.|+++++-+.. .+.--..+.+.|+++|++++.....+.++.-.......||.+||.+|.-. +.++.. +++|++
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iiigsP~y~---~~~~~~-~k~fld 331 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFASPTLN---NTMMPS-VAAALN 331 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEECCCBT---TBCCHH-HHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEEEcCccC---cCchHH-HHHHHH
Confidence 368999997642 22333357778888999998765544432211123446799999999654 334443 566665
Q ss_pred --------CCCcEEEEeC-C---CCcHHHHHHHHH-cCceecCC
Q 013932 107 --------SGHDLIVAAD-S---NASDLIREVATE-CGVDFDED 137 (433)
Q Consensus 107 --------~GGNlLv~~~-~---~~~~~lr~ll~e-lGI~~~p~ 137 (433)
+|-.+.+.+. . ...+.++.++.+ +|..+...
T Consensus 332 ~l~~~~~~~~K~~~~~~t~g~~~~a~~~l~~~l~~~~g~~~~~~ 375 (414)
T 2q9u_A 332 YVRGLTLIKGKPAFAFGAFGWSNRAVPDIVAELRDGCKADVYDE 375 (414)
T ss_dssp HHHHHTTTTTSBEEEEEEESSSCCHHHHHHHHHHHTSCCBCCCS
T ss_pred HHHhhcccCCCEEEEEEecCCCchhHHHHHHHHHhhcCcEEccC
Confidence 3445554432 1 224678899999 99988765
No 19
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*
Probab=78.09 E-value=4 Score=44.08 Aligned_cols=99 Identities=17% Similarity=0.244 Sum_probs=64.8
Q ss_pred CCCCeEEEEEcCccc---------------ccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCc
Q 013932 27 PTDRRVLVLVDDFAI---------------KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVER 91 (433)
Q Consensus 27 ~~~~r~LVl~d~~~~---------------~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~ 91 (433)
....++-+|+|..+. .+....+.+.|.++|..+++..+++ .|. .|+.||+ |....
T Consensus 394 ~~~a~VAil~d~~s~wa~~~~~~~~~~~~y~~~~~~~y~aL~~~gi~vD~v~~~~---dL~-----~Yklvv~--P~~~~ 463 (675)
T 3tty_A 394 RSEAKVAVMYDWENRWALELSSGPSIALNYVNEVHKYYDALYKQNIQTDMISVEE---DLS-----KYKVVIA--PVMYM 463 (675)
T ss_dssp BCCCSEEEECCHHHHHHHHHCCCSBTTCCHHHHHHHHHHHHHTTTCCEEEECTTS---CCT-----TCSEEEE--TTCCB
T ss_pred CCCCCEEEEEchhhhhhhhcccCCCccccHHHHHHHHHHHHHHcCceEEEecCcC---Ccc-----cCCEEEE--eccEe
Confidence 346788888876542 0123468899999999999987664 233 4677776 55443
Q ss_pred CCCCCCHHHHHHHHHCCCcEEEEeCCCCc-H--HHH------HHHHHcCceecC
Q 013932 92 FGGSIDVASIVDFVDSGHDLIVAADSNAS-D--LIR------EVATECGVDFDE 136 (433)
Q Consensus 92 ~~~~ls~~~L~~Fid~GGNlLv~~~~~~~-~--~lr------~ll~elGI~~~p 136 (433)
+ +.-..+.|.+|+++||+|++..-++.- + .++ .|.+-+||...+
T Consensus 464 ~-~~~~~~~L~~yV~~GG~lv~t~~sG~~de~~~~~~~~~pg~L~~l~Gv~v~e 516 (675)
T 3tty_A 464 V-KPGFAERVERFVAQGGTFVTTFFSGIVNENDLVTLGGYPGELRNVMGIWAEE 516 (675)
T ss_dssp C-CTTHHHHHHHHHHTTCEEEEETTCSCBCTTSCBCCSSBTGGGHHHHTEEEEE
T ss_pred c-CHHHHHHHHHHHhcCCEEEEEccCCcCCCCCcccCCCCCcchHHhcCceEEE
Confidence 4 334569999999999999987644331 0 011 345556887755
No 20
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=77.81 E-value=9.7 Score=31.73 Aligned_cols=101 Identities=19% Similarity=0.277 Sum_probs=58.4
Q ss_pred eEEEEEcCcc--cccchhhHHHHhhcCCcEEEEecCCCCCcccccccccc-cCEEEEeCCCCCcCCCC-CCHHHHHHHHH
Q 013932 31 RVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYL-YDALVLFCPSVERFGGS-IDVASIVDFVD 106 (433)
Q Consensus 31 r~LVl~d~~~--~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~-yd~LII~~p~~~~~~~~-ls~~~L~~Fid 106 (433)
|++|++-+.. .+.--..+.+.|+++|++++....++.+.. .... ||.+|+..|..- . +. .-+..+.+|++
T Consensus 2 ki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~----~l~~~~d~ii~~~p~y~-~-g~~~~p~~~~~fl~ 75 (147)
T 1f4p_A 2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAG----GLFEGFDLVLLGCSTWG-D-DSIELQDDFIPLFD 75 (147)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCST----TTTTTCSEEEEEECEEC-S-SSCEECTTTHHHHH
T ss_pred eEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCCHH----HhcCcCCEEEEEeCCCC-C-CCcCCChhHHHHHH
Confidence 7888986652 122223456678888999987644333211 2234 899999999762 1 11 01234455555
Q ss_pred C-------CCcEEEEeC--C---CC---cHHHHHHHHHcCceecCC
Q 013932 107 S-------GHDLIVAAD--S---NA---SDLIREVATECGVDFDED 137 (433)
Q Consensus 107 ~-------GGNlLv~~~--~---~~---~~~lr~ll~elGI~~~p~ 137 (433)
. |-.+.+.+. . .. .+.++..+.++|......
T Consensus 76 ~l~~~~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~ 121 (147)
T 1f4p_A 76 SLEETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQD 121 (147)
T ss_dssp TGGGSCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSC
T ss_pred HHHhcccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhc
Confidence 3 444444332 1 11 367888888999987664
No 21
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=77.70 E-value=4.4 Score=39.83 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=64.9
Q ss_pred CCCeEEEEEcCcc--cccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHH
Q 013932 28 TDRRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFV 105 (433)
Q Consensus 28 ~~~r~LVl~d~~~--~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fi 105 (433)
...++++++-+.. .+..-....+.|++.|++++.....+....-.......||.+||..|.-. +.++. .+++|+
T Consensus 255 ~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiigsP~y~---~~~~~-~~k~~l 330 (404)
T 2ohh_A 255 VDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIY---DEPYP-SVGDLL 330 (404)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCEET---TEECT-HHHHHH
T ss_pred CCCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECcccc---ccchH-HHHHHH
Confidence 3578899986642 23333456778888999998876655543212223456799999999654 22333 355555
Q ss_pred H----------CCCcEEEEeC-C---CCcHHHHHHHHHcCceecC
Q 013932 106 D----------SGHDLIVAAD-S---NASDLIREVATECGVDFDE 136 (433)
Q Consensus 106 d----------~GGNlLv~~~-~---~~~~~lr~ll~elGI~~~p 136 (433)
+ +|-.+.+.+. . ...+.++.++.++|..+..
T Consensus 331 d~l~~~~~~~l~~k~~~~~~~~g~~~~a~~~l~~~l~~~g~~~~~ 375 (404)
T 2ohh_A 331 MYLRGLKFNRTLTRKALVFGSMGGNGGATGTMKELLAEAGFDVAC 375 (404)
T ss_dssp HHHHHHCGGGTCCEEEEEEEEESSSCCHHHHHHHHHHHTTEEEEE
T ss_pred HHhhhccccccCCCEEEEEEecCCCChhHHHHHHHHHHCCCEEEe
Confidence 4 2333443332 1 2246889999999988765
No 22
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=75.35 E-value=10 Score=33.36 Aligned_cols=103 Identities=12% Similarity=0.109 Sum_probs=62.0
Q ss_pred CeEEEEEcCccc-ccchhhHHHHhhcCCcEEEEecCCCCCc----------------cc-ccccccccCEEEEeCCCCCc
Q 013932 30 RRVLVLVDDFAI-KSSHSLYFGSLTSRGFQLEFKLADDPNI----------------GL-QRYGQYLYDALVLFCPSVER 91 (433)
Q Consensus 30 ~r~LVl~d~~~~-~~~~S~F~~~L~~rGf~v~~~~~~d~~~----------------~L-~~~ge~~yd~LII~~p~~~~ 91 (433)
.|+||++-+.+. +..-..+.+.|++.|.+++.....+. + .+ .......+|.|||.+|.--
T Consensus 5 mkilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~d~~~~~~~~~l~~aD~ii~gsP~y~- 82 (199)
T 2zki_A 5 PNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRET-LPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSPTRY- 82 (199)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCCC-SCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEEECBT-
T ss_pred cEEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEehhHh-CChhhhhccCCCcccccccccHHHHHhCCEEEEECCccc-
Confidence 488999977111 22223477778888999987644442 1 01 0223346799999999654
Q ss_pred CCCCCCHHHHHHHHHC-----------CCcEEEEe--CC---CC---cHHHHHHHHHcCceecCC
Q 013932 92 FGGSIDVASIVDFVDS-----------GHDLIVAA--DS---NA---SDLIREVATECGVDFDED 137 (433)
Q Consensus 92 ~~~~ls~~~L~~Fid~-----------GGNlLv~~--~~---~~---~~~lr~ll~elGI~~~p~ 137 (433)
+.++. .++.|+|+ |..+.+.+ +. +. .+.++.++..+|+.+.+.
T Consensus 83 --~~~~~-~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~ 144 (199)
T 2zki_A 83 --GNMAG-GLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPI 144 (199)
T ss_dssp --TBCCH-HHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCC
T ss_pred --cCccH-HHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCC
Confidence 33443 46777765 33333322 22 12 346888899999998875
No 23
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=74.94 E-value=5.4 Score=35.51 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=64.4
Q ss_pred eEEEEEcCcc---c-ccchhhHHHH-hhcCCcEEEEecCCCCCcc-----------c--ccccccccCEEEEeCCCCCcC
Q 013932 31 RVLVLVDDFA---I-KSSHSLYFGS-LTSRGFQLEFKLADDPNIG-----------L--QRYGQYLYDALVLFCPSVERF 92 (433)
Q Consensus 31 r~LVl~d~~~---~-~~~~S~F~~~-L~~rGf~v~~~~~~d~~~~-----------L--~~~ge~~yd~LII~~p~~~~~ 92 (433)
|+|+++-+.. . +.--..+.+. |+++|.+++.....+..+. . .......+|.||+..|.-.
T Consensus 4 kilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~-- 81 (197)
T 2vzf_A 4 SIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYK-- 81 (197)
T ss_dssp EEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBT--
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccC--
Confidence 6788887642 1 2222235566 8888999987644432210 0 0122346799999999654
Q ss_pred CCCCCHHHHHHHHHC-------CCcEEEEeCCC-Cc------HHHHHHHHHcCceecCCCCeEEEe
Q 013932 93 GGSIDVASIVDFVDS-------GHDLIVAADSN-AS------DLIREVATECGVDFDEDPAAMVID 144 (433)
Q Consensus 93 ~~~ls~~~L~~Fid~-------GGNlLv~~~~~-~~------~~lr~ll~elGI~~~p~~~~~VvD 144 (433)
+.+ +..++.|+|. |..+.+++..+ .. ..++.++..+|+.+.+. +..+-+
T Consensus 82 -~~~-p~~lK~~ld~l~~~~~~gK~~~~~~tgg~~~~~~a~~~~l~~~l~~~g~~~v~~-~v~~~~ 144 (197)
T 2vzf_A 82 -ASY-TGLLKAFLDILPQFALAGKAALPLATGGSPAHVLALDYGLRPVLHSMGVRHVVQ-SFFLVQ 144 (197)
T ss_dssp -TBC-CHHHHHHHTTSCTTTTTTCEEEEEEEESSGGGGGHHHHTHHHHHHTTTCSEECC-CEEEES
T ss_pred -CCC-CHHHHHHHHhccccccCCCEEEEEEECCCcchhhHHHHHHHHHHHHcCCEeccc-eEEEec
Confidence 334 3456777764 34455433222 11 25899999999999886 544443
No 24
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=70.69 E-value=7.6 Score=33.62 Aligned_cols=109 Identities=10% Similarity=0.041 Sum_probs=59.1
Q ss_pred cCCCCCCeEEEEEcCcc--cccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCC-CcCCCCCCHHH
Q 013932 24 PENPTDRRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV-ERFGGSIDVAS 100 (433)
Q Consensus 24 ~~s~~~~r~LVl~d~~~--~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~-~~~~~~ls~~~ 100 (433)
+.+....|++|+|.+.. .+.-=....+.|.++|++++....++.+. .....||.+||..|.. ..-.+ -..+.
T Consensus 4 ~~~~~~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~----~~l~~~d~ii~g~pt~g~G~~p-~~~~~ 78 (167)
T 1ykg_A 4 APAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKF----KQIASEKLLIVVTSTQGEGEPP-EEAVA 78 (167)
T ss_dssp --------CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCCG----GGGGGCSEEEEEEECBGGGBCC-GGGHH
T ss_pred CCCCCCCeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEeehhhCCH----HHhccCCeEEEEEcccCCCcCC-hhHHH
Confidence 34445568999997752 22222345667788899887654444321 1234579999999977 32111 12355
Q ss_pred HHHHHHC-------CCcEEEEe-C-C------CCcHHHHHHHHHcCceecCC
Q 013932 101 IVDFVDS-------GHDLIVAA-D-S------NASDLIREVATECGVDFDED 137 (433)
Q Consensus 101 L~~Fid~-------GGNlLv~~-~-~------~~~~~lr~ll~elGI~~~p~ 137 (433)
+.+.+.. |-.+.+.+ + . .....+...++++|....-.
T Consensus 79 f~~~l~~~~~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~ 130 (167)
T 1ykg_A 79 LHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLD 130 (167)
T ss_dssp HHHHHTSTTCCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSC
T ss_pred HHHHHHhccccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeec
Confidence 6666643 33344443 2 1 12467788888999987654
No 25
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=70.63 E-value=19 Score=31.55 Aligned_cols=100 Identities=20% Similarity=0.178 Sum_probs=59.1
Q ss_pred CeEEEEEcCcc--cccchhhHHHHhhc-CCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013932 30 RRVLVLVDDFA--IKSSHSLYFGSLTS-RGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD 106 (433)
Q Consensus 30 ~r~LVl~d~~~--~~~~~S~F~~~L~~-rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid 106 (433)
.|+||++-+.. .+.--..+.+.|++ .|.+++.....+.+. .....||.||+..|.-. +.++. .+++|+|
T Consensus 5 ~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~----~~l~~aD~ii~gsP~y~---g~~~~-~lk~fld 76 (188)
T 2ark_A 5 GKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATK----EDVLWADGLAVGSPTNM---GLVSW-KMKRFFD 76 (188)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCH----HHHHHCSEEEEEEECBT---TBCCH-HHHHHHH
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCH----HHHHhCCEEEEEeCccC---CcCCH-HHHHHHH
Confidence 47899997742 12223346778888 999998876555432 22345699999999764 33443 5566666
Q ss_pred ----------CCCcEEEEeCC---C--CcH---HHHHHHHHcCceecCC
Q 013932 107 ----------SGHDLIVAADS---N--ASD---LIREVATECGVDFDED 137 (433)
Q Consensus 107 ----------~GGNlLv~~~~---~--~~~---~lr~ll~elGI~~~p~ 137 (433)
+|..+.+.+.. . ... .+...+.++|+.+...
T Consensus 77 ~~~~~~~~~l~gk~~~~~~t~g~~~g~~~~~l~~l~~~l~~~g~~~~~~ 125 (188)
T 2ark_A 77 DVLGDLWGEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGFLVFGV 125 (188)
T ss_dssp HTGGGTTTSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTTCEECCE
T ss_pred HHhhhhHHHhCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHCCcEEeCC
Confidence 34444443321 1 112 3444455789887763
No 26
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=68.50 E-value=20 Score=31.15 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=60.4
Q ss_pred eEEEEEcCcc--cccchhhHHHHhhc-CCcEEEEecCCCCC---------------cccccccccccCEEEEeCCCCCcC
Q 013932 31 RVLVLVDDFA--IKSSHSLYFGSLTS-RGFQLEFKLADDPN---------------IGLQRYGQYLYDALVLFCPSVERF 92 (433)
Q Consensus 31 r~LVl~d~~~--~~~~~S~F~~~L~~-rGf~v~~~~~~d~~---------------~~L~~~ge~~yd~LII~~p~~~~~ 92 (433)
|+||++-+.. .+..-..+.+.|++ +|.+++.....+.. ..........+|.||+.+|.--
T Consensus 3 kilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~-- 80 (198)
T 3b6i_A 3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRF-- 80 (198)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEEEET--
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEEeChhc--
Confidence 7889987741 12233457788888 89999876544320 0011334456799999999753
Q ss_pred CCCCCHHHHHHHHHC-----------CCcEEEEe--CC-CC-c---HHHHHHHHHcCceecCC
Q 013932 93 GGSIDVASIVDFVDS-----------GHDLIVAA--DS-NA-S---DLIREVATECGVDFDED 137 (433)
Q Consensus 93 ~~~ls~~~L~~Fid~-----------GGNlLv~~--~~-~~-~---~~lr~ll~elGI~~~p~ 137 (433)
+.++ ..++.|+|. |..+.+.+ +. +. . ..++.++.++|+.+.+.
T Consensus 81 -~~~~-~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~g~~~~~l~~l~~~l~~~g~~~v~~ 141 (198)
T 3b6i_A 81 -GNMS-GQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPI 141 (198)
T ss_dssp -TEEC-HHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSSTTHHHHHHHHHHHHHHTTCEECCC
T ss_pred -CCch-HHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCCccHHHHHHHHHHHHHHCCcEEECC
Confidence 3233 456666664 33444333 22 11 1 34556777889988875
No 27
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=67.85 E-value=22 Score=34.73 Aligned_cols=105 Identities=10% Similarity=0.056 Sum_probs=64.2
Q ss_pred CCeEEEEEcCcc--cccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013932 29 DRRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD 106 (433)
Q Consensus 29 ~~r~LVl~d~~~--~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid 106 (433)
..|++|++-+.. .+.--....+.|++.|.+++.....+.+..-.......||.+|+..|.-. +...+ .+.+|++
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gsp~~~---~~~~~-~~~~~l~ 327 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHN---NGILP-YVAGTLQ 327 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCBT---TBCCH-HHHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccC---CCchH-HHHHHHH
Confidence 589999997652 12222346667888899988765544322211112356799999999654 22333 3566655
Q ss_pred C-------CCcEEEEeCC-C---CcHHHHHHHHHcCceecCC
Q 013932 107 S-------GHDLIVAADS-N---ASDLIREVATECGVDFDED 137 (433)
Q Consensus 107 ~-------GGNlLv~~~~-~---~~~~lr~ll~elGI~~~p~ 137 (433)
. |..+.+.+.. . ..+.++..+.++|..+...
T Consensus 328 ~l~~~~l~~k~~~~f~t~g~~~~a~~~l~~~l~~~G~~~~~~ 369 (402)
T 1e5d_A 328 YIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPAT 369 (402)
T ss_dssp HHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCCSC
T ss_pred HhhhcccCCCEEEEEEcCCCccHHHHHHHHHHHHCCCEEecC
Confidence 3 4455544432 2 2467888999999988764
No 28
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=64.52 E-value=24 Score=31.48 Aligned_cols=101 Identities=20% Similarity=0.202 Sum_probs=62.6
Q ss_pred CCCeEEEEEcCcc-c-ccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCC--CHHHHHH
Q 013932 28 TDRRVLVLVDDFA-I-KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSI--DVASIVD 103 (433)
Q Consensus 28 ~~~r~LVl~d~~~-~-~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~l--s~~~L~~ 103 (433)
...+++|+|.... . +.-=....+.|.++|++++....++.. .....||.+||..|+.. +.+ +.+.+.+
T Consensus 20 ~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~~~-----~~l~~~d~vi~g~~Ty~---G~~p~~~~~fl~ 91 (191)
T 1bvy_F 20 HNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHA-----GNLPREGAVLIVTASYN---GHPPDNAKQFVD 91 (191)
T ss_dssp -CCCEEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGGST-----TCCCSSSEEEEEECCBT---TBCCTTTHHHHH
T ss_pred CCCeEEEEEECCChHHHHHHHHHHHHHHhCCCceEEeeHHHhh-----hhhhhCCeEEEEEeecC---CCcCHHHHHHHH
Confidence 4688999997742 2 222234667788889998876444421 13345799999999763 323 4467777
Q ss_pred HHHC-------CCcEEEEe--CCCC-------cHHHHHHHHHcCceecC
Q 013932 104 FVDS-------GHDLIVAA--DSNA-------SDLIREVATECGVDFDE 136 (433)
Q Consensus 104 Fid~-------GGNlLv~~--~~~~-------~~~lr~ll~elGI~~~p 136 (433)
+++. |-.+-+.+ +..- ...+...++++|.....
T Consensus 92 ~L~~~~~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~ 140 (191)
T 1bvy_F 92 WLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIA 140 (191)
T ss_dssp HHHTCCSSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCE
T ss_pred HHHhccchhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEee
Confidence 7753 22333433 2222 36788899999987654
No 29
>3pjl_A 34 kDa membrane antigen; IG fold, metal binding, human lactoferrin, membrane protein; 1.70A {Treponema pallidum} PDB: 3pjn_A
Probab=63.89 E-value=29 Score=31.79 Aligned_cols=70 Identities=16% Similarity=0.245 Sum_probs=50.8
Q ss_pred CCceEEEEEEEEEeC--------CeeeeccCCCeEEEEEEeC--ceEeecc---ccCCCceEEEEEecCCceeeeEEEEe
Q 013932 310 NDDLEYSVEIYEWSG--------TSWEPYVSDDVQVQFYMMS--PYVLKTL---STDQKGHYSAEFKVPDVYGVFQFKVE 376 (433)
Q Consensus 310 ~d~v~y~i~i~e~~~--------~~W~P~~~~diQlEf~mld--Py~R~~l---~~~~~~~y~~~f~~PD~hGvf~f~v~ 376 (433)
+.+|+.+.+|+-..+ |.|+||- .|..|++..| .-..-++ ...+.-.|-.++|||+-=|-|+-++.
T Consensus 93 ~sDiHLEADIhA~~~~n~~Gf~~G~wvPYL--tV~y~Itk~d~~~v~eGtfmPMvAsDGPHYGdNVKL~~G~G~Y~vt~~ 170 (212)
T 3pjl_A 93 EADCHIEADIHANEAGKDLGYGVGDFVPYL--RVVAFLQKHGSEKVQKVMFAPMNAGDGPHYGANVKFEEGLGTYKVRFE 170 (212)
T ss_dssp TCSEEEEEEEEECGGGGGGTCCTTCBCCSC--EEEEEEEETTCCCCEEEECEEEEETTEEEEEEEECCTTCSEEEEEEEE
T ss_pred hCCeEEEEeccccccCCcccccCCCCCcCc--eeEEEEEeCCCCeEEEeeccccccCcCCccceeeccCCCCccEEEEEE
Confidence 457999999999853 7999995 6888888753 2233332 22344479999999877799988887
Q ss_pred eeecc
Q 013932 377 YQRLG 381 (433)
Q Consensus 377 Y~R~G 381 (433)
..-|+
T Consensus 171 I~pPs 175 (212)
T 3pjl_A 171 IAAPS 175 (212)
T ss_dssp EECCC
T ss_pred EcCCC
Confidence 77664
No 30
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=61.69 E-value=40 Score=36.45 Aligned_cols=103 Identities=13% Similarity=0.024 Sum_probs=66.9
Q ss_pred CCCCeEEEEEcCc-ccccchhhHHHHhhcCCcEEEEecCCC---CCcccccccccccCEEEEeCCCC---------CcCC
Q 013932 27 PTDRRVLVLVDDF-AIKSSHSLYFGSLTSRGFQLEFKLADD---PNIGLQRYGQYLYDALVLFCPSV---------ERFG 93 (433)
Q Consensus 27 ~~~~r~LVl~d~~-~~~~~~S~F~~~L~~rGf~v~~~~~~d---~~~~L~~~ge~~yd~LII~~p~~---------~~~~ 93 (433)
..++|++||+.+- .+........+.|++.|.++....++. .+..+..-..-.||.|||-.... +.+-
T Consensus 535 l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr 614 (688)
T 3ej6_A 535 IATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLF 614 (688)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTS
T ss_pred ccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhc
Confidence 4478999999765 455677788999999999999987754 22234444566799999954422 1222
Q ss_pred CCCCH-HHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceec
Q 013932 94 GSIDV-ASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFD 135 (433)
Q Consensus 94 ~~ls~-~~L~~Fid~GGNlLv~~~~~~~~~lr~ll~elGI~~~ 135 (433)
.+-.+ +-+.+|.+.|.=|-.+.. + ..+|.+.||...
T Consensus 615 ~~~~a~~fV~e~~~hgKpIAAIch-g-----p~lL~~AGI~~~ 651 (688)
T 3ej6_A 615 PAGRPSQILTDGYRWGKPVAAVGS-A-----KKALQSIGVEEK 651 (688)
T ss_dssp CTTHHHHHHHHHHHTTCCEEEEGG-G-----HHHHHHTTCCSS
T ss_pred cCHHHHHHHHHHHHcCCEEEEeCc-c-----HHHHHHcCCCCC
Confidence 11122 556777777765543322 1 267888999754
No 31
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=61.62 E-value=49 Score=27.43 Aligned_cols=100 Identities=7% Similarity=0.001 Sum_probs=58.9
Q ss_pred CeEEEEEcCcc--cccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCC-Cc-CCCCCCHHHHHHHH
Q 013932 30 RRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV-ER-FGGSIDVASIVDFV 105 (433)
Q Consensus 30 ~r~LVl~d~~~--~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~-~~-~~~~ls~~~L~~Fi 105 (433)
.|++|+|.+.. .+.-=....+.|.++|+++......+ ......||.+||..|.. .. ++ -..+.+.+.+
T Consensus 2 ~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~------~~~l~~~d~vi~g~pt~g~g~~p--~~~~~f~~~l 73 (147)
T 2hna_A 2 ADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGPL------LEDLPASGIWLVISSTHGAGDIP--DNLSPFYEAL 73 (147)
T ss_dssp CSEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEECCTT------SCSSCSEEEEEEECCTTTTCCTT--SSCHHHHHHH
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEecCCC------HHHcccCCeEEEEECccCCCCCC--hhHHHHHHHH
Confidence 36888887642 23233346677888899887642211 11234579999999987 32 22 2335566665
Q ss_pred HC-----CCcEE-EEeC--------CCCcHHHHHHHHHcCceecCC
Q 013932 106 DS-----GHDLI-VAAD--------SNASDLIREVATECGVDFDED 137 (433)
Q Consensus 106 d~-----GGNlL-v~~~--------~~~~~~lr~ll~elGI~~~p~ 137 (433)
.. .|..+ +.+- ......+...++++|......
T Consensus 74 ~~~~~~l~~~~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~ 119 (147)
T 2hna_A 74 QEQKPDLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGE 119 (147)
T ss_dssp HHHCCCTTEEEEEEESCCHHHHSCSSSCTTHHHHHHHHHTCEECSS
T ss_pred HhhccccCCCEEEEEecccCCHHHHHHHHHHHHHHHHHcCCeEeee
Confidence 31 23333 4331 133567999999999876654
No 32
>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.73 E-value=32 Score=27.39 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=47.9
Q ss_pred ceEeCCceEEEEEEEEEeCCeeeeccCCCeEEEEEEeC---ceEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013932 306 IYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMS---PYVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 379 (433)
Q Consensus 306 ~Y~i~d~v~y~i~i~e~~~~~W~P~~~~diQlEf~mld---Py~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 379 (433)
.++++...+|.|+-..-. |+=..+-.|.++++..--| .-+...++..++|+|.++|+.+. -|-|+..|.|.-
T Consensus 23 ~~~~g~~~~F~V~~~d~~-G~~~~~Gg~~~~v~i~~p~~~~~~~~~~v~D~~dGty~v~y~p~~-~G~y~i~V~~~g 97 (113)
T 2ds4_A 23 RAREKQTASFTLLCKDAA-GEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKE-PGVYTVWVCIKE 97 (113)
T ss_dssp EEETTCCEEEEEECBBTT-SSBCCCCCCCEEEEEEESSCSSCCCEEEEECCSSSEEEEEEECSS-SEEEEEEEEESS
T ss_pred ceecCCcEEEEEEEECCC-CCCcccCCceEEEEEEecCCCCceeEEEEEECCCCEEEEEEEeCC-CeEEEEEEEECC
Confidence 377888888888766532 3333334567777776443 12333445567899999998655 699999998863
No 33
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=60.50 E-value=21 Score=34.85 Aligned_cols=106 Identities=8% Similarity=0.081 Sum_probs=61.8
Q ss_pred CCeEEEEEcCcc--cccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCH--HHHHHH
Q 013932 29 DRRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDV--ASIVDF 104 (433)
Q Consensus 29 ~~r~LVl~d~~~--~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~--~~L~~F 104 (433)
..++++++.+.. .+..-....+.|.++|.+++.....+....-.......||.+||..|.-. +...+ +.+++.
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~g~p~y~---~~~~~~~~~~l~~ 327 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTIN---NDILPVVSPLLDD 327 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEEECCCBT---TBCCGGGHHHHHH
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccC---ccchHHHHHHHHH
Confidence 467888886641 22233346677888899888654333222111112246799999999654 22333 444444
Q ss_pred HH----CCCcEEEEeCC----CCcHHHHHHHHHcCceecCC
Q 013932 105 VD----SGHDLIVAADS----NASDLIREVATECGVDFDED 137 (433)
Q Consensus 105 id----~GGNlLv~~~~----~~~~~lr~ll~elGI~~~p~ 137 (433)
+. +|..+.+.+.. ...+.++..+.++|+.+...
T Consensus 328 l~~~~~~~k~~~~~~s~g~~~~a~~~l~~~l~~~g~~~~~~ 368 (398)
T 1ycg_A 328 LVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAE 368 (398)
T ss_dssp HHHHCCSSCEEEEEEEESSSCCHHHHHHHHHHHTTCEESCS
T ss_pred HhccccCCCEEEEEEeCCCchHHHHHHHHHHHHCCeEEecC
Confidence 33 34444444322 22577999999999998875
No 34
>3lzq_A P19 protein; copper binding, iron transport, iron uptake, P19 delition, T protein; 1.41A {Campylobacter jejuni} PDB: 3lzn_A 3lzo_A 3lzp_A 3lzl_A 3lzr_A
Probab=60.18 E-value=37 Score=29.82 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=49.5
Q ss_pred eCCceEEEEEEEEEeC-------CeeeeccCCCeEEEEEEeC--ceEeecccc---CCCceEEEEEecC------Cceee
Q 013932 309 INDDLEYSVEIYEWSG-------TSWEPYVSDDVQVQFYMMS--PYVLKTLST---DQKGHYSAEFKVP------DVYGV 370 (433)
Q Consensus 309 i~d~v~y~i~i~e~~~-------~~W~P~~~~diQlEf~mld--Py~R~~l~~---~~~~~y~~~f~~P------D~hGv 370 (433)
=..+++-+.+|+...+ |.|+||- .|..|++..| .-.+-+|=| .+.-+|-.++|+| +-=|-
T Consensus 37 ~~sdiHlEaDIha~~~n~~Gf~~G~wvPyL--~v~y~i~~~~~~~v~~g~~mPMvA~dGpHYG~NvkL~~~~~~~~G~G~ 114 (159)
T 3lzq_A 37 SLADIHLEADIHALKNNPNGFPEGFWMPYL--TIAYELKNTDTGAIKRGTLMPMVADDGPHYGANIAMEKDKKGGFGVGN 114 (159)
T ss_dssp GGCSEEEEEEEEECTTCTTCCCTTCBCCSC--EEEEEEEETTTCCEEEEECEEEEETTEEEEEEEECSTTCTTCCCSSEE
T ss_pred hhCCeEEEEecccccCCCCcccCCcCCcCc--eEEEEEEeCCCCeEEEeecceeecCCCCccccceeccccccCCCCCcc
Confidence 4578999999999865 4999995 6888877554 333444322 3344688888887 66788
Q ss_pred eEEEEeeeecc
Q 013932 371 FQFKVEYQRLG 381 (433)
Q Consensus 371 f~f~v~Y~R~G 381 (433)
|+-++...-|+
T Consensus 115 Y~v~~~I~pP~ 125 (159)
T 3lzq_A 115 YELTFYISNPE 125 (159)
T ss_dssp EEEEEEEECGG
T ss_pred EEEEEEECCcc
Confidence 87777766554
No 35
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=59.44 E-value=34 Score=29.00 Aligned_cols=99 Identities=9% Similarity=0.123 Sum_probs=55.5
Q ss_pred CeEEEEEcCccc--ccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH-
Q 013932 30 RRVLVLVDDFAI--KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD- 106 (433)
Q Consensus 30 ~r~LVl~d~~~~--~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid- 106 (433)
.|+||++-+..- +.-=..+.+.|... +++....++.+. .....||.+||..|.-. . + ..+..+.+|++
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~--~v~~~~~~~~~~----~~l~~~d~ii~g~p~y~-~-g-~~p~~~~~fl~~ 72 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGND--VVTLHDVSQAEV----TDLNDYQYLIIGCPTLN-I-G-ELQSDWEGLYSE 72 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTT--TEEEEETTTCCG----GGGGGCSEEEEEEEEET-T-T-EECHHHHHHHTT
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcC--CcEEEEcccCCH----HHHhhCCEEEEEEeeCC-C-C-cCCHHHHHHHHH
Confidence 478999976521 22222344555544 455443333321 12345799999999742 1 2 23345666765
Q ss_pred ------CCCcEEEEeCCC-------C---cHHHHHHHHHcCceecCC
Q 013932 107 ------SGHDLIVAADSN-------A---SDLIREVATECGVDFDED 137 (433)
Q Consensus 107 ------~GGNlLv~~~~~-------~---~~~lr~ll~elGI~~~p~ 137 (433)
+|..+.+.+..+ . ...++.++.++|..+...
T Consensus 73 l~~~~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~ 119 (169)
T 1obo_A 73 LDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGY 119 (169)
T ss_dssp GGGCCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCC
T ss_pred hhhcCcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 355555544311 1 257788888889888764
No 36
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=59.11 E-value=27 Score=29.60 Aligned_cols=83 Identities=11% Similarity=0.093 Sum_probs=55.3
Q ss_pred hHHHHhhcCCcEEEEecCCCCCcc-cccc----c-ccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeCCCCc
Q 013932 47 LYFGSLTSRGFQLEFKLADDPNIG-LQRY----G-QYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNAS 120 (433)
Q Consensus 47 ~F~~~L~~rGf~v~~~~~~d~~~~-L~~~----g-e~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GGNlLv~~~~~~~ 120 (433)
...+.|.+.||++--..|+.+++. +.-| + +..-|..||+-|... -++.+.+-++.|-..+|.......
T Consensus 40 ~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~vp~~~------~~~vv~~~~~~gi~~i~~~~g~~~ 113 (144)
T 2d59_A 40 IVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKPKL------TMEYVEQAIKKGAKVVWFQYNTYN 113 (144)
T ss_dssp HHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCHHH------HHHHHHHHHHHTCSEEEECTTCCC
T ss_pred HHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEEeCHHH------HHHHHHHHHHcCCCEEEECCCchH
Confidence 455678899999776666643321 1001 0 112488888877522 456677778888777776665567
Q ss_pred HHHHHHHHHcCceec
Q 013932 121 DLIREVATECGVDFD 135 (433)
Q Consensus 121 ~~lr~ll~elGI~~~ 135 (433)
+.+.+.+++.|+.+-
T Consensus 114 ~~l~~~a~~~Gi~vv 128 (144)
T 2d59_A 114 REASKKADEAGLIIV 128 (144)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCEEE
Confidence 889999999999887
No 37
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=58.55 E-value=36 Score=28.67 Aligned_cols=84 Identities=18% Similarity=0.302 Sum_probs=55.0
Q ss_pred hHHHHhhcCCcEEEEecCCCCCcc-------cccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeCCCC
Q 013932 47 LYFGSLTSRGFQLEFKLADDPNIG-------LQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNA 119 (433)
Q Consensus 47 ~F~~~L~~rGf~v~~~~~~d~~~~-------L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GGNlLv~~~~~~ 119 (433)
...+.|.+.||+|-...|+-+++. +.+- ...-|.+||+-|. + .-.+.+.+-++.|=..+|.-..+.
T Consensus 32 ~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el-~~~vDlvii~vp~-~-----~v~~v~~~~~~~g~~~i~~~~~~~ 104 (138)
T 1y81_A 32 IILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVREL-PKDVDVIVFVVPP-K-----VGLQVAKEAVEAGFKKLWFQPGAE 104 (138)
T ss_dssp HHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGS-CTTCCEEEECSCH-H-----HHHHHHHHHHHTTCCEEEECTTSC
T ss_pred HHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHh-CCCCCEEEEEeCH-H-----HHHHHHHHHHHcCCCEEEEcCccH
Confidence 456678889999877666543321 1111 1124888888773 3 244556667777766666655566
Q ss_pred cHHHHHHHHHcCceecCC
Q 013932 120 SDLIREVATECGVDFDED 137 (433)
Q Consensus 120 ~~~lr~ll~elGI~~~p~ 137 (433)
.+.+.+.+++.|+.+-..
T Consensus 105 ~~~l~~~a~~~Gi~~igp 122 (138)
T 1y81_A 105 SEEIRRFLEKAGVEYSFG 122 (138)
T ss_dssp CHHHHHHHHHHTCEEECS
T ss_pred HHHHHHHHHHCCCEEEcC
Confidence 788999999999988764
No 38
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=56.59 E-value=21 Score=28.38 Aligned_cols=63 Identities=10% Similarity=0.171 Sum_probs=38.6
Q ss_pred EeCCceEEEEEEEEEeCCeeeeccCCCeEEEEEEeCc-eEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013932 308 RINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSP-YVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 379 (433)
Q Consensus 308 ~i~d~v~y~i~i~e~~~~~W~P~~~~diQlEf~mldP-y~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 379 (433)
+++....|+|+-..- | .++++++.+--++ -++..++..++|+|.++|+ |..-|.|+..|.|..
T Consensus 22 ~vg~~~~F~V~~~~a--G------~~~l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~-p~~~G~y~i~V~~~g 85 (100)
T 3rgh_A 22 TAGEVGQFQVDCSSA--G------SAELTIEICSEAGLPAEVYIQDHGDGTHTITYI-PLCPGAYTVTIKYGG 85 (100)
T ss_dssp ETTSCEEEEEECTTS--C------SCCEEEEEECTTSCBCEEEEEECSSSEEEEEEE-CCSSEEEEEEEEETT
T ss_pred EcCCcEEEEEEECCC--C------CceEEEEEECCCCCEeEEEEEeCCCCEEEEEEE-eCCCeeEEEEEEECC
Confidence 455556666554320 1 1344444332222 3445555567899999999 667799999999864
No 39
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=56.37 E-value=19 Score=31.83 Aligned_cols=85 Identities=11% Similarity=0.001 Sum_probs=50.7
Q ss_pred CCCCCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCC------------cccccccccccCEEEEeCCC-CCcC
Q 013932 26 NPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPN------------IGLQRYGQYLYDALVLFCPS-VERF 92 (433)
Q Consensus 26 s~~~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~------------~~L~~~ge~~yd~LII~~p~-~~~~ 92 (433)
..++++++|++.+.-+...+..-.+-|++.||+++...++... ..|.+-....||.|||-.-. .+.+
T Consensus 5 ~~t~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~~l 84 (177)
T 4hcj_A 5 GKTNNILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCITL 84 (177)
T ss_dssp CCCCEEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGGGG
T ss_pred ccCCCEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHHHH
Confidence 4456777888755445566777888999999999987655321 22334445678999884321 1223
Q ss_pred CCCCCH-HHHHHHHHCCCc
Q 013932 93 GGSIDV-ASIVDFVDSGHD 110 (433)
Q Consensus 93 ~~~ls~-~~L~~Fid~GGN 110 (433)
..+-.. +-|.+|.++|.-
T Consensus 85 ~~~~~~~~~l~~~~~~~k~ 103 (177)
T 4hcj_A 85 WDDWRTQGLAKLFLDNQKI 103 (177)
T ss_dssp TTCHHHHHHHHHHHHTTCE
T ss_pred hhCHHHHHHHHHHHHhCCE
Confidence 221111 455666666653
No 40
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=56.24 E-value=40 Score=28.56 Aligned_cols=100 Identities=10% Similarity=0.133 Sum_probs=54.5
Q ss_pred CeEEEEEcCcc--cccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH-
Q 013932 30 RRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD- 106 (433)
Q Consensus 30 ~r~LVl~d~~~--~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid- 106 (433)
.|+||+|-+.. .+.--..+.+.|... ++++....++.+ ......||.+|+..|.-. . +. -+..+.+|++
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~-~~v~~~~~~~~~----~~~l~~~d~ii~g~pty~-~-g~-~p~~~~~f~~~ 72 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGE-SIVDLNDIANAD----ASDLNAYDYLIIGCPTWN-V-GE-LQSDWEGIYDD 72 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTST-TTEEEEEGGGCC----GGGGGGCSEEEEECCEET-T-TE-ECHHHHHHGGG
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcc-cceEEEEhhhCC----HhHHhhCCEEEEEecccC-C-Cc-CCHHHHHHHHH
Confidence 37889997652 122222355556555 556554333321 123345799999999743 1 21 2334445554
Q ss_pred ------CCCcEEEEe-CCC------C---cHHHHHHHHHcCceecCC
Q 013932 107 ------SGHDLIVAA-DSN------A---SDLIREVATECGVDFDED 137 (433)
Q Consensus 107 ------~GGNlLv~~-~~~------~---~~~lr~ll~elGI~~~p~ 137 (433)
+|-.+.+.+ ... . ...++.++.++|..+...
T Consensus 73 l~~~~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~ 119 (169)
T 1czn_A 73 LDSVNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGY 119 (169)
T ss_dssp GGGSCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCC
T ss_pred hhhhccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 244555444 211 1 356778888889887763
No 41
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=55.90 E-value=23 Score=30.85 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=53.0
Q ss_pred CCCCCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcc-----------------cccccccccCEEEEeCCC
Q 013932 26 NPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIG-----------------LQRYGQYLYDALVLFCPS 88 (433)
Q Consensus 26 s~~~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~-----------------L~~~ge~~yd~LII~~p~ 88 (433)
+....|+++|+-+.-...+.....+-|+..||++++..++...+. +..-....||.|||-...
T Consensus 6 ~~~~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~ 85 (190)
T 2vrn_A 6 DLTGKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGT 85 (190)
T ss_dssp CCTTCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCT
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCc
Confidence 345678888886655566777788899999999998877653221 111122478999886643
Q ss_pred --CCcCCCCC-CHHHHHHHHHCCCcEE
Q 013932 89 --VERFGGSI-DVASIVDFVDSGHDLI 112 (433)
Q Consensus 89 --~~~~~~~l-s~~~L~~Fid~GGNlL 112 (433)
.+.+..+- -.+-|.++.++|.-|.
T Consensus 86 ~~~~~~~~~~~l~~~l~~~~~~gk~i~ 112 (190)
T 2vrn_A 86 VNPDKLRLEEGAMKFVRDMYDAGKPIA 112 (190)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCEE
T ss_pred hhHHHHhhCHHHHHHHHHHHHcCCEEE
Confidence 12121111 1145666666776544
No 42
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=55.84 E-value=48 Score=30.84 Aligned_cols=106 Identities=14% Similarity=0.037 Sum_probs=63.1
Q ss_pred CCCeEEEEEcCccc----ccchhhHHHHhhcCCcEEEEecCCCCCcc-----------cccccccccCEEEEeCCCCCcC
Q 013932 28 TDRRVLVLVDDFAI----KSSHSLYFGSLTSRGFQLEFKLADDPNIG-----------LQRYGQYLYDALVLFCPSVERF 92 (433)
Q Consensus 28 ~~~r~LVl~d~~~~----~~~~S~F~~~L~~rGf~v~~~~~~d~~~~-----------L~~~ge~~yd~LII~~p~~~~~ 92 (433)
...|+|+++-+... +..-..+.+.|++.|.+++.....+-.+. -........|.|||.+|.--
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn-- 110 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERH-- 110 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSS--
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCC--
Confidence 34689998876532 12223477778888999998655443211 01122334599999999654
Q ss_pred CCCCCHHHHHHHHHCC-----------Cc-EEEE-eC--CC---CcHHHHHHHHHcCceecCC
Q 013932 93 GGSIDVASIVDFVDSG-----------HD-LIVA-AD--SN---ASDLIREVATECGVDFDED 137 (433)
Q Consensus 93 ~~~ls~~~L~~Fid~G-----------GN-lLv~-~~--~~---~~~~lr~ll~elGI~~~p~ 137 (433)
.+++. .|+.|||.- |. +.++ +. .+ ..+.++.++..+|+...+.
T Consensus 111 -~sipa-~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~gg~~a~~~Lr~~l~~lg~~~v~~ 171 (247)
T 2q62_A 111 -GAMTG-IMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQSFNAVNQMRILGRWMRMITIPN 171 (247)
T ss_dssp -SSCCH-HHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSSCCCHHHHHHHHHHHHTTCEECSC
T ss_pred -CCccH-HHHHHHHHhhhccCcccccCCCEEEEEEeCCCccHHHHHHHHHHHHHHCCCEEeCC
Confidence 32343 445555431 23 3333 32 11 2468999999999998875
No 43
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=55.59 E-value=44 Score=36.14 Aligned_cols=104 Identities=13% Similarity=0.049 Sum_probs=66.2
Q ss_pred CCCCeEEEEEc--CcccccchhhHHHHhhcCCcEEEEecCCCC---CcccccccccccCEEEEeCCCC------------
Q 013932 27 PTDRRVLVLVD--DFAIKSSHSLYFGSLTSRGFQLEFKLADDP---NIGLQRYGQYLYDALVLFCPSV------------ 89 (433)
Q Consensus 27 ~~~~r~LVl~d--~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~---~~~L~~~ge~~yd~LII~~p~~------------ 89 (433)
..+.|++||+. +-.+........+.|++.|.+++...++.. +..+..-..-.||.|||-....
T Consensus 527 l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~ 606 (688)
T 2iuf_A 527 LDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEP 606 (688)
T ss_dssp CTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCC
T ss_pred CCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccccccccccc
Confidence 34689999998 666677888999999999999998766542 2234444567889999966531
Q ss_pred ------CcCCCCCCH-HHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecC
Q 013932 90 ------ERFGGSIDV-ASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFDE 136 (433)
Q Consensus 90 ------~~~~~~ls~-~~L~~Fid~GGNlLv~~~~~~~~~lr~ll~elGI~~~p 136 (433)
+.+-.+-.+ +-|.++.+.|.=|- +...+ + .+|.+.||.-.+
T Consensus 607 ~~~~~~~~L~~~~~~~~~v~~~~~~gKpIa-AIc~a-p----~vL~~aGi~~~d 654 (688)
T 2iuf_A 607 SAGSGASTLYPAGRPLNILLDAFRFGKTVG-ALGSG-S----DALESGQISSER 654 (688)
T ss_dssp CTTSCCCSSSCTTHHHHHHHHHHHHTCEEE-EEGGG-H----HHHHHTTCCTTS
T ss_pred ccccchhhcccChHHHHHHHHHHHcCCEEE-EECch-H----HHHHHcCCCCCC
Confidence 222111112 55666666665443 32222 1 367788996533
No 44
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=54.53 E-value=36 Score=29.69 Aligned_cols=97 Identities=14% Similarity=0.047 Sum_probs=56.1
Q ss_pred CeEEEEEcCcccccchhhHHHHhhc-CCcEEEEecCCCCCc------c------cccccccccCEEEEeCCCCCcCCC-C
Q 013932 30 RRVLVLVDDFAIKSSHSLYFGSLTS-RGFQLEFKLADDPNI------G------LQRYGQYLYDALVLFCPSVERFGG-S 95 (433)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~F~~~L~~-rGf~v~~~~~~d~~~------~------L~~~ge~~yd~LII~~p~~~~~~~-~ 95 (433)
.|+++++-+.-.........+.|+. .||++++..++...+ . +..-....||.|||-......+.. .
T Consensus 2 ~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~~~~ 81 (188)
T 2fex_A 2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAA 81 (188)
T ss_dssp CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHHTCCC
T ss_pred cEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCcccccccH
Confidence 4677777554445666678888988 999999877664321 1 222222378998886543211111 1
Q ss_pred CCHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 96 IDVASIVDFVDSGHDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 96 ls~~~L~~Fid~GGNlLv~~~~~~~~~lr~ll~elGI 132 (433)
--.+-|.++.++|.-|. +...+ - .+|.+.|+
T Consensus 82 ~l~~~l~~~~~~~k~i~-aiC~G----~-~~La~aGl 112 (188)
T 2fex_A 82 DLGGLVKRFRDRDRLVA-GICAA----A-SALGGTGV 112 (188)
T ss_dssp CCHHHHHHHHHTTCEEE-EETHH----H-HHHHHTTT
T ss_pred HHHHHHHHHHHCCCEEE-EECHH----H-HHHHHCCC
Confidence 23367777777766433 32221 1 36667775
No 45
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=53.79 E-value=45 Score=28.88 Aligned_cols=104 Identities=12% Similarity=0.140 Sum_probs=60.1
Q ss_pred CeEEEEEcCccc-----ccchhhHHHHhhcCC--cEEEEecCCCCCcccc-----------------------------c
Q 013932 30 RRVLVLVDDFAI-----KSSHSLYFGSLTSRG--FQLEFKLADDPNIGLQ-----------------------------R 73 (433)
Q Consensus 30 ~r~LVl~d~~~~-----~~~~S~F~~~L~~rG--f~v~~~~~~d~~~~L~-----------------------------~ 73 (433)
.|+|+++-+... +..-..+.+.|+++| .+++.....+..+... .
T Consensus 2 mkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 81 (201)
T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELI 81 (201)
T ss_dssp CEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHH
Confidence 378888866542 122225778888876 8998775554332100 1
Q ss_pred ccccccCEEEEeCCCCCcCCCCCCH--HHHHHHHH-----------------CCCcEEEEe-CCC---------CcHHHH
Q 013932 74 YGQYLYDALVLFCPSVERFGGSIDV--ASIVDFVD-----------------SGHDLIVAA-DSN---------ASDLIR 124 (433)
Q Consensus 74 ~ge~~yd~LII~~p~~~~~~~~ls~--~~L~~Fid-----------------~GGNlLv~~-~~~---------~~~~lr 124 (433)
.....+|.|||..|--- .+++. +.++|.+. +|-.+++++ ..+ ....++
T Consensus 82 ~~l~~aD~iv~~~P~y~---~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~ 158 (201)
T 1t5b_A 82 AELKAHDVIVIAAPMYN---FNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLK 158 (201)
T ss_dssp HHHHHCSEEEEECCCBT---TBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHH
T ss_pred HHHHhCCEEEEEeCccc---CcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHH
Confidence 12345799999999654 22333 44444443 233454333 211 124588
Q ss_pred HHHHHcCceecC
Q 013932 125 EVATECGVDFDE 136 (433)
Q Consensus 125 ~ll~elGI~~~p 136 (433)
.++..+|+...+
T Consensus 159 ~~l~~~G~~~~~ 170 (201)
T 1t5b_A 159 VFLGFIGITDVN 170 (201)
T ss_dssp HHHHHTTCCCEE
T ss_pred HHHhhcCcceeE
Confidence 999999998765
No 46
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=53.39 E-value=55 Score=29.19 Aligned_cols=74 Identities=12% Similarity=0.194 Sum_probs=44.8
Q ss_pred CCeEEEEEcCccc---c-----cchhhHHHHhhcCCcEEEEecCCCC-CcccccccccccCEEEEeCCCCCcCCCCCCHH
Q 013932 29 DRRVLVLVDDFAI---K-----SSHSLYFGSLTSRGFQLEFKLADDP-NIGLQRYGQYLYDALVLFCPSVERFGGSIDVA 99 (433)
Q Consensus 29 ~~r~LVl~d~~~~---~-----~~~S~F~~~L~~rGf~v~~~~~~d~-~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~ 99 (433)
..|+|||.=.+.. + ..-..+.+.|+++|.+++.....+. ++.-........|.|||..|--- + + -+-
T Consensus 12 ~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~~P~y~-~--s-~pa 87 (204)
T 2amj_A 12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQMPGWW-M--G-APW 87 (204)
T ss_dssp CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEEEECBT-T--B-CCH
T ss_pred CcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEECCccc-c--C-CCH
Confidence 4689999855431 1 1223577788888999998765542 22222333445599999999654 2 1 335
Q ss_pred HHHHHHH
Q 013932 100 SIVDFVD 106 (433)
Q Consensus 100 ~L~~Fid 106 (433)
.|+.|+|
T Consensus 88 ~LK~~iD 94 (204)
T 2amj_A 88 TVKKYID 94 (204)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666666
No 47
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=52.47 E-value=28 Score=30.51 Aligned_cols=110 Identities=16% Similarity=0.128 Sum_probs=62.8
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCC-CCcc------------cccccccccCEEEEeCCC--CCcCC
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADD-PNIG------------LQRYGQYLYDALVLFCPS--VERFG 93 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d-~~~~------------L~~~ge~~yd~LII~~p~--~~~~~ 93 (433)
.+|++|++-+.-+..+.....+-|+..||++++..++. ..+. +..-....||.|||-... ...+.
T Consensus 5 ~kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 84 (190)
T 4e08_A 5 SKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMG 84 (190)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHHHH
T ss_pred CcEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHHhh
Confidence 47899998766566777888899999999999987765 2211 222223468999985431 11111
Q ss_pred CCCC-HHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecCCCCeEEEeccCc
Q 013932 94 GSID-VASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFDEDPAAMVIDHINY 148 (433)
Q Consensus 94 ~~ls-~~~L~~Fid~GGNlLv~~~~~~~~~lr~ll~elGI~~~p~~~~~VvDhf~~ 148 (433)
.+-. .+-|.++.++|. .+.+...+. .+|.+-|+ .++ ..+.-|-..
T Consensus 85 ~~~~~~~~l~~~~~~~k-~i~aiC~G~-----~~La~aGl--L~g--~~~T~~~~~ 130 (190)
T 4e08_A 85 ESSLVGDLLRSQESGGG-LIAAICAAP-----TVLAKHGV--ASG--KSLTSYPSM 130 (190)
T ss_dssp HCHHHHHHHHHHHHTTC-EEEEETTTH-----HHHHHTTC--STT--CEECCCGGG
T ss_pred hCHHHHHHHHHHHHCCC-EEEEECHHH-----HHHHHCCC--cCC--CeEEeCcCH
Confidence 1001 144556666555 443443332 35667773 342 245545433
No 48
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=52.15 E-value=34 Score=29.67 Aligned_cols=103 Identities=12% Similarity=0.152 Sum_probs=60.8
Q ss_pred eEEEEEcCccc----ccchhhHHHHhhcC------CcEEEEecCCCCCccc-------------------------cccc
Q 013932 31 RVLVLVDDFAI----KSSHSLYFGSLTSR------GFQLEFKLADDPNIGL-------------------------QRYG 75 (433)
Q Consensus 31 r~LVl~d~~~~----~~~~S~F~~~L~~r------Gf~v~~~~~~d~~~~L-------------------------~~~g 75 (433)
|+|+++-+... +..-..+.+.|+++ |.+++.....+..+.. ....
T Consensus 2 kilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (191)
T 1t0i_A 2 KVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRI 81 (191)
T ss_dssp EEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHH
T ss_pred eEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHH
Confidence 67888866432 12222467777776 7998875332211100 0122
Q ss_pred ccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC------CCcEEEEe-CC-C---CcHHHHHHHHHcCceecCC
Q 013932 76 QYLYDALVLFCPSVERFGGSIDVASIVDFVDS------GHDLIVAA-DS-N---ASDLIREVATECGVDFDED 137 (433)
Q Consensus 76 e~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~------GGNlLv~~-~~-~---~~~~lr~ll~elGI~~~p~ 137 (433)
...+|.||+.+|.-- ..+ +..|+.|+|. |..+++++ +. . ....++.++..+|+...+.
T Consensus 82 l~~aD~iI~~sP~y~---~~~-p~~lK~~iD~~~~~l~gK~~~~~~~G~~~~~~~~~~l~~~l~~~G~~~~~~ 150 (191)
T 1t0i_A 82 VNALDIIVFVTPQYN---WGY-PAALKNAIDRLYHEWHGKPALVVSYGGHGGSKCNDQLQEVLHGLKMNVIGG 150 (191)
T ss_dssp HHTCSEEEEEEECBT---TBC-CHHHHHHHHTCSTTTTTCEEEEEEEETTTTHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHhCCEEEEEeceEC---CCC-CHHHHHHHHHHHhhcCCCEEEEEEeCCcchhhHHHHHHHHHHHCCCEEcce
Confidence 346799999999654 223 3567888885 44455433 22 1 1356888999999988773
No 49
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*
Probab=51.85 E-value=35 Score=36.02 Aligned_cols=70 Identities=19% Similarity=0.361 Sum_probs=53.5
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeeccCCCeEEEEEEeCce----EeeccccC-CCceEEEEEecCCc--eeeeEEEE
Q 013932 303 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY----VLKTLSTD-QKGHYSAEFKVPDV--YGVFQFKV 375 (433)
Q Consensus 303 ~~~~Y~i~d~v~y~i~i~e~~~~~W~P~~~~diQlEf~mldPy----~R~~l~~~-~~~~y~~~f~~PD~--hGvf~f~v 375 (433)
+...||=.|.|.|.+=+- +.++.|.. +. +.+...||- .|..++.+ ..|.|+..|+||+. -|.|+.++
T Consensus 113 DR~iYrPGqtV~~r~i~~---d~~~~p~~-~~--v~v~l~dP~g~~i~~~~~~~~~~~G~~~~~f~Lp~~~~~G~w~I~v 186 (645)
T 2hr0_A 113 DKTIYTPGSTVLYRIFTV---NHKLLPVG-RT--VMVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWKIRA 186 (645)
T ss_dssp SCSBCCTTSEEEEEEEEE---CTTSCBCC-CE--EEEEEECTTSCEEEEEEEECTTTTTEEEEEEECCSSCCCSEEEEEE
T ss_pred CCccCCCCCEEEEEEEEE---CCCCcccC-ce--EEEEEECCCCCEEEEEEeeccccCCeEEEEEECCCccccccEEEEE
Confidence 455899999999998764 35788854 43 455567995 34455544 78999999999997 79999999
Q ss_pred eee
Q 013932 376 EYQ 378 (433)
Q Consensus 376 ~Y~ 378 (433)
.+.
T Consensus 187 ~~~ 189 (645)
T 2hr0_A 187 YYE 189 (645)
T ss_dssp EET
T ss_pred EEC
Confidence 884
No 50
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=50.39 E-value=46 Score=29.26 Aligned_cols=85 Identities=19% Similarity=0.213 Sum_probs=51.7
Q ss_pred CCCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCC-c-------c------cccccccccCEEEEeCCCC-CcC
Q 013932 28 TDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPN-I-------G------LQRYGQYLYDALVLFCPSV-ERF 92 (433)
Q Consensus 28 ~~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~-~-------~------L~~~ge~~yd~LII~~p~~-~~~ 92 (433)
...|++||+-+.....+.....+.|+..||++++..++... + . +..-....||.|||-.... +.+
T Consensus 22 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~~~~l 101 (193)
T 1oi4_A 22 LSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYL 101 (193)
T ss_dssp CCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHHHHH
T ss_pred cCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcCHHHh
Confidence 35688888866555566777889999999999988776542 1 1 1111234689988865421 112
Q ss_pred CCC-CCHHHHHHHHHCCCcEE
Q 013932 93 GGS-IDVASIVDFVDSGHDLI 112 (433)
Q Consensus 93 ~~~-ls~~~L~~Fid~GGNlL 112 (433)
..+ --.+-|.++.++|.-|.
T Consensus 102 ~~~~~l~~~l~~~~~~gk~i~ 122 (193)
T 1oi4_A 102 RGDNRFVTFTRDFVNSGKPVF 122 (193)
T ss_dssp TTSHHHHHHHHHHHHTTCCEE
T ss_pred hhCHHHHHHHHHHHHcCCEEE
Confidence 110 01155666777776555
No 51
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=50.31 E-value=40 Score=29.38 Aligned_cols=110 Identities=17% Similarity=0.163 Sum_probs=61.7
Q ss_pred CeEEEEEcCcccc----cchhhHHHHhhcCCcEEEEecCCCCCc--------------ccccccccccCEEEEeCCCCCc
Q 013932 30 RRVLVLVDDFAIK----SSHSLYFGSLTSRGFQLEFKLADDPNI--------------GLQRYGQYLYDALVLFCPSVER 91 (433)
Q Consensus 30 ~r~LVl~d~~~~~----~~~S~F~~~L~~rGf~v~~~~~~d~~~--------------~L~~~ge~~yd~LII~~p~~~~ 91 (433)
.|+|+++-+.... ..-..+.+.|+ .|.+++.....+-+. .-.......+|.|||..|.--
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~- 84 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYN- 84 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEET-
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccccc-
Confidence 4899999775321 12223444555 688998765544110 000123345799999999654
Q ss_pred CCCCCCH--HHHHHHHH-------CCCcEEEEeCC-C------CcHHHHHHHHHcCceecCCCCeEEEe
Q 013932 92 FGGSIDV--ASIVDFVD-------SGHDLIVAADS-N------ASDLIREVATECGVDFDEDPAAMVID 144 (433)
Q Consensus 92 ~~~~ls~--~~L~~Fid-------~GGNlLv~~~~-~------~~~~lr~ll~elGI~~~p~~~~~VvD 144 (433)
.+++. +.++|.+. +|..+.+++.. + ....++.++..+|+...+. ..+.+.
T Consensus 85 --~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~gg~~g~~~~~~~l~~~l~~~g~~~~~~-~~~~~~ 150 (193)
T 1rtt_A 85 --YSMAGVLKNAIDWASRPPEQPFSGKPAAILGASAGRFGTARAQYHLRQTLVFLDVHPLNK-PEVMIS 150 (193)
T ss_dssp --TEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECSSTTTTHHHHHHHHHHHHHHTCEECCS-SCEEEC
T ss_pred --cCcCHHHHHHHHHhccccCcccCCCeEEEEEeCCCCCccHHHHHHHHHHHHHcCCEEcCC-CeEEec
Confidence 22443 44455443 24445543322 2 1367889999999999873 134554
No 52
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=48.20 E-value=30 Score=37.72 Aligned_cols=102 Identities=11% Similarity=0.174 Sum_probs=63.4
Q ss_pred CCCCCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCc------------ccccccccccCEEEEeCCCCCcCC
Q 013932 26 NPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNI------------GLQRYGQYLYDALVLFCPSVERFG 93 (433)
Q Consensus 26 s~~~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~------------~L~~~ge~~yd~LII~~p~~~~~~ 93 (433)
+..+.|++||+.+--+......-.+.|+..|.+++...++...+ .+..-..-.||.|||-....+.+-
T Consensus 597 ti~grKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGGg~~~Lr 676 (753)
T 3ttv_A 597 DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNIADIA 676 (753)
T ss_dssp CCTTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCSCGGGTT
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCCChHHhh
Confidence 44578999999776666677888999999999999876654321 122223345899999655333332
Q ss_pred CCCCH-HHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCce
Q 013932 94 GSIDV-ASIVDFVDSGHDLIVAADSNASDLIREVATECGVD 133 (433)
Q Consensus 94 ~~ls~-~~L~~Fid~GGNlLv~~~~~~~~~lr~ll~elGI~ 133 (433)
.+-.. +-|.++.+.|.=|--+ ..+ + .+|.+.||.
T Consensus 677 ~d~~vl~~Vre~~~~gKpIAAI-C~G-p----~lLa~AGL~ 711 (753)
T 3ttv_A 677 DNGDANYYLMEAYKHLKPIALA-GDA-R----KFKATIKIA 711 (753)
T ss_dssp TCHHHHHHHHHHHHTTCCEEEE-GGG-G----GGGGGGTCC
T ss_pred hCHHHHHHHHHHHhcCCeEEEE-Cch-H----HHHHHcCCC
Confidence 21111 4566666666544322 222 1 467888984
No 53
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=48.11 E-value=34 Score=31.19 Aligned_cols=103 Identities=11% Similarity=0.231 Sum_probs=61.5
Q ss_pred eEEEEEcCccc----ccchhhHHHHhhcC-CcEEEEecCCCCCccc------------------------ccccccccCE
Q 013932 31 RVLVLVDDFAI----KSSHSLYFGSLTSR-GFQLEFKLADDPNIGL------------------------QRYGQYLYDA 81 (433)
Q Consensus 31 r~LVl~d~~~~----~~~~S~F~~~L~~r-Gf~v~~~~~~d~~~~L------------------------~~~ge~~yd~ 81 (433)
|+|+++.+... +..-..+.+.|+++ |.+++.....+..+.- .......+|.
T Consensus 3 kIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~ 82 (242)
T 1sqs_A 3 KIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDI 82 (242)
T ss_dssp EEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCE
Confidence 78888876532 22233477778877 9999876544432210 0111355699
Q ss_pred EEEeCCCCCcCCCCCCHHHHHHHHHC-----------CCcEEEEe--C-CC---CcHHHHHHHHHcCceecCC
Q 013932 82 LVLFCPSVERFGGSIDVASIVDFVDS-----------GHDLIVAA--D-SN---ASDLIREVATECGVDFDED 137 (433)
Q Consensus 82 LII~~p~~~~~~~~ls~~~L~~Fid~-----------GGNlLv~~--~-~~---~~~~lr~ll~elGI~~~p~ 137 (433)
|||.+|.-- .+++. .|+.|+|. |-.+++++ + ++ ..+.++.++..+|+...+.
T Consensus 83 iI~~sP~y~---~~~p~-~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~g~~~~~~~l~~~l~~~G~~~v~~ 151 (242)
T 1sqs_A 83 IIISSPVYL---QNVSV-DTKNFIERIGGWSHLFRLAGKFVVTLDVAESNGSDNVSEYLRDIFSYMGGQILHQ 151 (242)
T ss_dssp EEEEEEECS---SSCCH-HHHHHHHHTGGGTTTTTTTTCEEEEEEEESSCCSCCHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEccccc---cCCCH-HHHHHHHHHHHhccccccCCCEEEEEEeCCCCchhhHHHHHHHHHHHCCCeeeeE
Confidence 999999654 22333 45556553 33444332 2 22 2467899999999998774
No 54
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=48.06 E-value=1.2e+02 Score=26.48 Aligned_cols=104 Identities=14% Similarity=0.153 Sum_probs=61.8
Q ss_pred CeEEEEEcCcccc----cchhhHHHHhhcCCcEEEEecCCCCCc-------------ccccccccccCEEEEeCCCCCcC
Q 013932 30 RRVLVLVDDFAIK----SSHSLYFGSLTSRGFQLEFKLADDPNI-------------GLQRYGQYLYDALVLFCPSVERF 92 (433)
Q Consensus 30 ~r~LVl~d~~~~~----~~~S~F~~~L~~rGf~v~~~~~~d~~~-------------~L~~~ge~~yd~LII~~p~~~~~ 92 (433)
.|+|++.-+.... ..-..+.+.|+ .|.+++.....|-.. .-........|.+|+..|.--
T Consensus 3 ~kilii~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y~-- 79 (192)
T 3fvw_A 3 KRILFIVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVYN-- 79 (192)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCBT--
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECcccc--
Confidence 3778887654321 11223566665 688988764443211 001223445699999999654
Q ss_pred CCCCCH--HHHHHHHHC--------------CCcEEEE-eCCC-----CcHHHHHHHHHcCceecCC
Q 013932 93 GGSIDV--ASIVDFVDS--------------GHDLIVA-ADSN-----ASDLIREVATECGVDFDED 137 (433)
Q Consensus 93 ~~~ls~--~~L~~Fid~--------------GGNlLv~-~~~~-----~~~~lr~ll~elGI~~~p~ 137 (433)
.+++. +..+|.+.. |-.++++ +..+ ....+|.++..+|+...+.
T Consensus 80 -~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~g~~~~~~~l~~~l~~~G~~~v~~ 145 (192)
T 3fvw_A 80 -YAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGASPEEVFEDYRSLLPFIRMHLVDQ 145 (192)
T ss_dssp -TBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC---CCSHHHHHHHHHTTCEECCC
T ss_pred -cCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCcchhHHHHHHHHHHHHcCCeeecc
Confidence 33443 677777763 1234433 3222 3478999999999999986
No 55
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=46.54 E-value=25 Score=29.98 Aligned_cols=84 Identities=15% Similarity=0.085 Sum_probs=50.9
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCc------c------cccccccccCEEEEeCCCC-CcCCCC
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNI------G------LQRYGQYLYDALVLFCPSV-ERFGGS 95 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~------~------L~~~ge~~yd~LII~~p~~-~~~~~~ 95 (433)
+.|+++++-+.-+..+.....+.|+..||++++..++...+ . +..-....||.|||-.... +.+..+
T Consensus 2 ~~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~ 81 (168)
T 3l18_A 2 SMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLN 81 (168)
T ss_dssp CCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTTC
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCHHHhccC
Confidence 46888888766666777888999999999999876654221 1 1121233589999855321 111111
Q ss_pred CC-HHHHHHHHHCCCcEE
Q 013932 96 ID-VASIVDFVDSGHDLI 112 (433)
Q Consensus 96 ls-~~~L~~Fid~GGNlL 112 (433)
-. .+-|.++.++|.-|.
T Consensus 82 ~~l~~~l~~~~~~~k~i~ 99 (168)
T 3l18_A 82 EKAVMITRRMFEDDKPVA 99 (168)
T ss_dssp HHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHCCCEEE
Confidence 01 145666666666544
No 56
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=45.98 E-value=39 Score=28.43 Aligned_cols=83 Identities=12% Similarity=0.116 Sum_probs=52.5
Q ss_pred hHHHHhhcCCcEEEEecCC--CCCc-------ccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCCCcEEEEeCC
Q 013932 47 LYFGSLTSRGFQLEFKLAD--DPNI-------GLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADS 117 (433)
Q Consensus 47 ~F~~~L~~rGf~v~~~~~~--d~~~-------~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~GGNlLv~~~~ 117 (433)
...+.|.+.||++--..|+ -+++ ++.+- +..-|..||+-|... -++.+.+-++.|=..+|....
T Consensus 31 ~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el-~~~vDlavi~vp~~~------~~~v~~~~~~~gi~~i~~~~g 103 (140)
T 1iuk_A 31 YVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDL-KEPVDILDVFRPPSA------LMDHLPEVLALRPGLVWLQSG 103 (140)
T ss_dssp HHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGC-CSCCSEEEECSCHHH------HTTTHHHHHHHCCSCEEECTT
T ss_pred HHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHC-CCCCCEEEEEeCHHH------HHHHHHHHHHcCCCEEEEcCC
Confidence 4556799999997777666 3322 11111 123488888877633 223344556666544555555
Q ss_pred CCcHHHHHHHHHcCceecC
Q 013932 118 NASDLIREVATECGVDFDE 136 (433)
Q Consensus 118 ~~~~~lr~ll~elGI~~~p 136 (433)
...+.+.+.+++.|+.+-.
T Consensus 104 ~~~~~~~~~a~~~Gir~vg 122 (140)
T 1iuk_A 104 IRHPEFEKALKEAGIPVVA 122 (140)
T ss_dssp CCCHHHHHHHHHTTCCEEE
T ss_pred cCHHHHHHHHHHcCCEEEc
Confidence 5678899999999998764
No 57
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=45.32 E-value=26 Score=34.63 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=34.4
Q ss_pred cCCCCCCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCC
Q 013932 24 PENPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDP 67 (433)
Q Consensus 24 ~~s~~~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~ 67 (433)
.......|++||+-+..+........+.|+..||++++..|+..
T Consensus 200 ~~~~~~~ki~ill~dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~ 243 (396)
T 3uk7_A 200 KITGANKRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKK 243 (396)
T ss_dssp EEECCCCEEEEECCTTEEHHHHHHHHHHHHHHTCEEEEECTTCC
T ss_pred cchhccceEEEEecCCCcchhHHHHHHHHHHCCCEEEEECCCCC
Confidence 33456789999997665666778888999999999999877643
No 58
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=43.04 E-value=53 Score=28.80 Aligned_cols=102 Identities=17% Similarity=0.184 Sum_probs=59.5
Q ss_pred eEEEEEcCccc-ccch-----hhHHHHhhcCC--cEEEEecCC--CCCccccc---------------------------
Q 013932 31 RVLVLVDDFAI-KSSH-----SLYFGSLTSRG--FQLEFKLAD--DPNIGLQR--------------------------- 73 (433)
Q Consensus 31 r~LVl~d~~~~-~~~~-----S~F~~~L~~rG--f~v~~~~~~--d~~~~L~~--------------------------- 73 (433)
|+|+++-+... .... ..+.+.|+++| .+++..... +..+....
T Consensus 3 kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 82 (208)
T 2hpv_A 3 KLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKV 82 (208)
T ss_dssp EEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHHHH
T ss_pred eEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHhhH
Confidence 78888866541 1222 35888899887 999987555 43222110
Q ss_pred -------ccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC--------------------CCcEEEE-e-C-CCC----
Q 013932 74 -------YGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS--------------------GHDLIVA-A-D-SNA---- 119 (433)
Q Consensus 74 -------~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~--------------------GGNlLv~-~-~-~~~---- 119 (433)
.....+|.|||..|--- .+++ ..|+.|||+ |-.++++ + + +..
T Consensus 83 ~~~~~~~~~l~~aD~iv~~~P~y~---~~~p-a~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~ 158 (208)
T 2hpv_A 83 ARFNELTDQFLSADKVVIANPMWN---LNVP-TRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDF 158 (208)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECBT---TBCC-HHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSH
T ss_pred HHHHHHHHHHHhCCEEEEEecccc---CCCC-HHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcch
Confidence 01235699999999654 2233 345555552 3344433 2 2 111
Q ss_pred -cHHHHHHHHHcCceecC
Q 013932 120 -SDLIREVATECGVDFDE 136 (433)
Q Consensus 120 -~~~lr~ll~elGI~~~p 136 (433)
...++.++..+|+...+
T Consensus 159 ~~~~l~~~~~~~G~~~~~ 176 (208)
T 2hpv_A 159 ASQYIKAILNFIGVDQVD 176 (208)
T ss_dssp HHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhCCCCeee
Confidence 24578889999998765
No 59
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=42.78 E-value=45 Score=26.02 Aligned_cols=95 Identities=16% Similarity=0.235 Sum_probs=45.1
Q ss_pred CCCCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013932 27 PTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD 106 (433)
Q Consensus 27 ~~~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid 106 (433)
..+.|+|++=|+...+. .+.+.|++.||++... .+..-.+..-....+|.+|+ +..... .+.-.+.+.+.
T Consensus 5 ~~~~~ilivdd~~~~~~---~l~~~L~~~g~~v~~~--~~~~~a~~~l~~~~~dlvi~-d~~l~~----~~g~~~~~~l~ 74 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRS---LLDSWFSSLGATTVLA--ADGVDALELLGGFTPDLMIC-DIAMPR----MNGLKLLEHIR 74 (130)
T ss_dssp TTTCEEEEECSCHHHHH---HHHHHHHHTTCEEEEE--SCHHHHHHHHTTCCCSEEEE-CCC---------CHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHH---HHHHHHHhCCceEEEe--CCHHHHHHHHhcCCCCEEEE-ecCCCC----CCHHHHHHHHH
Confidence 34567766666654443 4566677889998753 22221233333344675555 432221 12222222232
Q ss_pred -C--CCcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 107 -S--GHDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 107 -~--GGNlLv~~~~~~~~~lr~ll~elGI 132 (433)
. ...++++++....+..... .+.|+
T Consensus 75 ~~~~~~~ii~~t~~~~~~~~~~~-~~~g~ 102 (130)
T 3eod_A 75 NRGDQTPVLVISATENMADIAKA-LRLGV 102 (130)
T ss_dssp HTTCCCCEEEEECCCCHHHHHHH-HHHCC
T ss_pred hcCCCCCEEEEEcCCCHHHHHHH-HHcCC
Confidence 3 3356666665554444433 34554
No 60
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=41.75 E-value=57 Score=31.10 Aligned_cols=107 Identities=15% Similarity=0.058 Sum_probs=64.1
Q ss_pred CCCeEEEEEcCccc----ccchhhHHHHhhcCCcEEEEecCCCCCccc------------ccccccccCEEEEeCCCCCc
Q 013932 28 TDRRVLVLVDDFAI----KSSHSLYFGSLTSRGFQLEFKLADDPNIGL------------QRYGQYLYDALVLFCPSVER 91 (433)
Q Consensus 28 ~~~r~LVl~d~~~~----~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L------------~~~ge~~yd~LII~~p~~~~ 91 (433)
...|+|+++-+... +..-..+.+.|++.|.+++.....+-.+.- ........|.|||.+|.--
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn- 135 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERH- 135 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEET-
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccc-
Confidence 45789999877532 122234777788889999986555432110 0112233599999999654
Q ss_pred CCCCCCH--HHHHHHHHC--------CCc-EEEE-eCC--C---CcHHHHHHHHHcCceecCC
Q 013932 92 FGGSIDV--ASIVDFVDS--------GHD-LIVA-ADS--N---ASDLIREVATECGVDFDED 137 (433)
Q Consensus 92 ~~~~ls~--~~L~~Fid~--------GGN-lLv~-~~~--~---~~~~lr~ll~elGI~~~p~ 137 (433)
++++. |.++|++.. .|. +.++ +.. + ..+.+|.++..+|+...++
T Consensus 136 --~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~gg~~a~~~Lr~~l~~lg~~vv~~ 196 (279)
T 2fzv_A 136 --GQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGSQSFNAVNTLRLLGRWMRMFTIPN 196 (279)
T ss_dssp --TEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSSCCCHHHHHHHHHHHHTTCEECSC
T ss_pred --cCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCccHHHHHHHHHHHHHhcCcEEeCC
Confidence 33444 556665532 133 3333 221 1 1367999999999998875
No 61
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=41.49 E-value=34 Score=30.45 Aligned_cols=38 Identities=11% Similarity=0.043 Sum_probs=29.6
Q ss_pred CeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCC
Q 013932 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDP 67 (433)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~ 67 (433)
.|++||+-+.....+.....+-|+..||++++..++..
T Consensus 3 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~ 40 (205)
T 2ab0_A 3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASD 40 (205)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSST
T ss_pred cEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 57888886655566777788899999999998877653
No 62
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=40.35 E-value=81 Score=28.16 Aligned_cols=58 Identities=14% Similarity=0.033 Sum_probs=38.7
Q ss_pred CeEEEEEcCcccccchhhHHHHhh--------cCCcEEEEecCCCCCc------c------cccccccccCEEEEeCC
Q 013932 30 RRVLVLVDDFAIKSSHSLYFGSLT--------SRGFQLEFKLADDPNI------G------LQRYGQYLYDALVLFCP 87 (433)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~F~~~L~--------~rGf~v~~~~~~d~~~------~------L~~~ge~~yd~LII~~p 87 (433)
+|+++++-+.-...+.+...+-|+ ..||++++..++...+ . +..-....||.|||-..
T Consensus 6 ~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG 83 (212)
T 3efe_A 6 KKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGG 83 (212)
T ss_dssp CCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCC
T ss_pred cEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCC
Confidence 578888866556667777888888 6799999876664321 1 12222237899998554
No 63
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=39.86 E-value=92 Score=36.96 Aligned_cols=70 Identities=21% Similarity=0.375 Sum_probs=52.9
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeeccCCCeEEEEEEeCceE----eecccc-CCCceEEEEEecCCc--eeeeEEEE
Q 013932 303 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPYV----LKTLST-DQKGHYSAEFKVPDV--YGVFQFKV 375 (433)
Q Consensus 303 ~~~~Y~i~d~v~y~i~i~e~~~~~W~P~~~~diQlEf~mldPy~----R~~l~~-~~~~~y~~~f~~PD~--hGvf~f~v 375 (433)
+...||=.|.|.|.+-+- +.++.|.. ..+.++ ..||-- |..+++ +..|.|+.+|+||+. -|.|+.++
T Consensus 134 DR~iYrPGqtV~~r~i~~---d~~~~p~~-~~v~v~--l~dP~g~~i~~~~~~~t~~~G~~~~~f~Lp~~~~~G~w~I~v 207 (1661)
T 2b39_A 134 DKTIYTPGSTVLYRVFTV---DHKLLPVG-QTVFIT--IETPDGIPVKRDSKSSQNQFGILTLSWNIPELVNMGVWKIKA 207 (1661)
T ss_dssp SCSEECTTSEEEEEEEEE---CTTSCCCC-CCEEEE--EEETTEEEEEEEEECTTTTTSCCEEEEECCSSCCCEEEEEEE
T ss_pred CCCccCCCCEEEEEEEEE---CCCCcccC-ceEEEE--EECCCCCEEeeeeecccccCCeEeeeeeCCCCccccceEEEE
Confidence 455799999999998665 36688854 455554 569853 344553 478999999999997 79999999
Q ss_pred eee
Q 013932 376 EYQ 378 (433)
Q Consensus 376 ~Y~ 378 (433)
.+.
T Consensus 208 ~~~ 210 (1661)
T 2b39_A 208 YYE 210 (1661)
T ss_dssp EET
T ss_pred Eee
Confidence 885
No 64
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=39.80 E-value=79 Score=25.11 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=48.0
Q ss_pred CeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC--
Q 013932 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS-- 107 (433)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~-- 107 (433)
.|+||+=|+...+. .+...|+..|+........+..-.+.......+|.+|+ +.... ..+.-.+.+.+.+
T Consensus 6 ~~ILivdd~~~~~~---~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~-D~~l~----~~~g~~~~~~lr~~~ 77 (144)
T 3kht_A 6 KRVLVVEDNPDDIA---LIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIIL-DIGLP----IANGFEVMSAVRKPG 77 (144)
T ss_dssp EEEEEECCCHHHHH---HHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEE-CTTCG----GGCHHHHHHHHHSSS
T ss_pred CEEEEEeCCHHHHH---HHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEE-eCCCC----CCCHHHHHHHHHhcc
Confidence 45555555544343 46667778899844433344332333333445675555 44322 1355566666665
Q ss_pred ---CCcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 108 ---GHDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 108 ---GGNlLv~~~~~~~~~lr~ll~elGI 132 (433)
+-.++++++....+..... -+.|+
T Consensus 78 ~~~~~pii~~s~~~~~~~~~~~-~~~ga 104 (144)
T 3kht_A 78 ANQHTPIVILTDNVSDDRAKQC-MAAGA 104 (144)
T ss_dssp TTTTCCEEEEETTCCHHHHHHH-HHTTC
T ss_pred cccCCCEEEEeCCCCHHHHHHH-HHcCC
Confidence 2236666665554444333 34553
No 65
>2di7_A BK158_1; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.37 E-value=12 Score=31.63 Aligned_cols=30 Identities=10% Similarity=0.412 Sum_probs=26.5
Q ss_pred cccCCCceEEEEEecCCceeeeEEEEeeee
Q 013932 350 LSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 379 (433)
Q Consensus 350 l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 379 (433)
....++|+|.+++++|+..|.|+..|-|+.
T Consensus 77 v~Dn~DGsy~v~Yr~~~~~g~~~I~V~~~~ 106 (124)
T 2di7_A 77 VLDRKDGSFIVRYRMYASYKNLKVEIKFQG 106 (124)
T ss_dssp EECCSSSCCEEECCCCSCCSCCEEEEESSS
T ss_pred EEECCCCeEEEEEECCCCCCCEEEEEEECC
Confidence 344578999999999999999999999985
No 66
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=39.33 E-value=74 Score=25.34 Aligned_cols=94 Identities=7% Similarity=0.090 Sum_probs=47.1
Q ss_pred CCCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC
Q 013932 28 TDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (433)
Q Consensus 28 ~~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~ 107 (433)
...|+||+=|+...+. .+...|+..||++... .+..-.+..-....+|.+|+= .... ..+.-.+.+.+.+
T Consensus 7 ~~~~iLivd~~~~~~~---~l~~~L~~~g~~v~~~--~~~~~a~~~l~~~~~dlii~d-~~l~----~~~g~~~~~~l~~ 76 (147)
T 2zay_A 7 KWWRIMLVDTQLPALA---ASISALSQEGFDIIQC--GNAIEAVPVAVKTHPHLIITE-ANMP----KISGMDLFNSLKK 76 (147)
T ss_dssp -CEEEEEECTTGGGGH---HHHHHHHHHTEEEEEE--SSHHHHHHHHHHHCCSEEEEE-SCCS----SSCHHHHHHHHHT
T ss_pred CCceEEEEeCCHHHHH---HHHHHHHHcCCeEEEe--CCHHHHHHHHHcCCCCEEEEc-CCCC----CCCHHHHHHHHHc
Confidence 3456666555554444 4556667789998743 222112222222346766663 3222 1344556666654
Q ss_pred -----CCcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 108 -----GHDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 108 -----GGNlLv~~~~~~~~~lr~ll~elGI 132 (433)
.-.++++++....+..... -+.|+
T Consensus 77 ~~~~~~~pii~ls~~~~~~~~~~~-~~~g~ 105 (147)
T 2zay_A 77 NPQTASIPVIALSGRATAKEEAQL-LDMGF 105 (147)
T ss_dssp STTTTTSCEEEEESSCCHHHHHHH-HHHTC
T ss_pred CcccCCCCEEEEeCCCCHHHHHHH-HhCCC
Confidence 3346666666554444333 34554
No 67
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=38.58 E-value=1.1e+02 Score=26.99 Aligned_cols=71 Identities=17% Similarity=0.108 Sum_probs=38.5
Q ss_pred eEEEEEcCcccc----cchhhHHHHhhcCCcEEEEecCCCCCcc--cc-------------------cccccccCEEEEe
Q 013932 31 RVLVLVDDFAIK----SSHSLYFGSLTSRGFQLEFKLADDPNIG--LQ-------------------RYGQYLYDALVLF 85 (433)
Q Consensus 31 r~LVl~d~~~~~----~~~S~F~~~L~~rGf~v~~~~~~d~~~~--L~-------------------~~ge~~yd~LII~ 85 (433)
|+|++.-+.... ..-..+.+.| +.|.+++.....+..+. +. .......|.|||.
T Consensus 2 kiLiI~gspr~~s~t~~l~~~~~~~~-~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~ 80 (196)
T 3lcm_A 2 KILIVYTHPNPTSFNAEILKQVQTNL-SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIFI 80 (196)
T ss_dssp EEEEEECCSCTTSHHHHHHHHHHHHS-CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEEE
T ss_pred EEEEEEeCCCCCChHHHHHHHHHHHh-cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEEE
Confidence 677777554321 2222366666 68999998654433221 10 1112346999999
Q ss_pred CCCCCcCCCCCCHHHHHHHHH
Q 013932 86 CPSVERFGGSIDVASIVDFVD 106 (433)
Q Consensus 86 ~p~~~~~~~~ls~~~L~~Fid 106 (433)
.|--- + ++ +..|+.|+|
T Consensus 81 ~P~y~-~--~~-pa~LK~~iD 97 (196)
T 3lcm_A 81 FPIWW-S--GM-PAILKGFID 97 (196)
T ss_dssp EECBT-T--BC-CHHHHHHHH
T ss_pred Cchhh-c--cc-cHHHHHHHH
Confidence 99654 2 22 345555555
No 68
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=37.95 E-value=83 Score=31.49 Aligned_cols=107 Identities=17% Similarity=0.117 Sum_probs=66.5
Q ss_pred CCCeEEEEEcCc--ccccchhhHHHHhhcCCcEEEE-ecCCCCC--cccccccccccCEEEEeCCCCCcCCCCCCH--HH
Q 013932 28 TDRRVLVLVDDF--AIKSSHSLYFGSLTSRGFQLEF-KLADDPN--IGLQRYGQYLYDALVLFCPSVERFGGSIDV--AS 100 (433)
Q Consensus 28 ~~~r~LVl~d~~--~~~~~~S~F~~~L~~rGf~v~~-~~~~d~~--~~L~~~ge~~yd~LII~~p~~~~~~~~ls~--~~ 100 (433)
..++++|+|++. +.+.--....+.|+++|.++.. +..+.+. .+-.-.....||.|||.+|+.. +.+-+ +.
T Consensus 264 ~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~---~~~~p~~~~ 340 (410)
T 4dik_A 264 KKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYE---AEIHPLMRF 340 (410)
T ss_dssp CTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTT---SSSCHHHHH
T ss_pred cccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcC---CcCCHHHHH
Confidence 456899999885 2233334688899999988764 3333222 1212234567799999999764 33333 33
Q ss_pred HHHHHH---CCCc-EEEEeC----CCCcHHHHHHHHHcCceecCC
Q 013932 101 IVDFVD---SGHD-LIVAAD----SNASDLIREVATECGVDFDED 137 (433)
Q Consensus 101 L~~Fid---~GGN-lLv~~~----~~~~~~lr~ll~elGI~~~p~ 137 (433)
++..+. ..|+ +.+.++ ....+.+++.++++|+++-+.
T Consensus 341 ~l~~l~~~~~~~K~~~~FGSyGWsg~a~~~~~~~l~~~~~~~v~~ 385 (410)
T 4dik_A 341 TLLEIIDKANYEKPVLVFGVHGWAPSAERTAGELLKETKFRILSF 385 (410)
T ss_dssp HHHHHHHHCCCCCEEEEEEECCCCCTTSCCHHHHHTTSSCEEEEE
T ss_pred HHHHHHhcccCCCEEEEEECCCCCcHHHHHHHHHHHHCCCEEECc
Confidence 444433 2344 445554 234578999999999987663
No 69
>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A
Probab=37.34 E-value=45 Score=27.15 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=42.1
Q ss_pred eEeCCceEEEEEEEEEeCCeeeeccCCCeEEEEEEeCceE---eeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013932 307 YRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPYV---LKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 379 (433)
Q Consensus 307 Y~i~d~v~y~i~i~e~~~~~W~P~~~~diQlEf~mldPy~---R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 379 (433)
-+++....|.|....- + . +|+..+.+|-- ...++..++|+|.++| .|..-|.|+..|.|+.
T Consensus 24 ~~vg~~~~F~V~~~~a-~--------g--~l~v~V~~P~g~~~~~~v~d~~~gty~v~y-tP~~~G~h~v~V~~~g 87 (112)
T 2d7p_A 24 LKVNQPASFAVQLNGA-R--------G--VIDARVHTPSGAVEECYVSELDSDKHTIRF-IPHENGVHSIDVKFNG 87 (112)
T ss_dssp CCTTCCEEEEEECTTC-C--------S--CEEEEEECSSSCBCCCEECSCBTTEEEEEE-CCSSCEEEEEEEEESS
T ss_pred cccCCcEEEEEEeCCC-C--------C--CEEEEEECCCCCeeeeEEEeCCCCeEEEEE-EcCCCEeEEEEEEECC
Confidence 4666677777765421 1 1 45566667753 2334445689999999 7888999999999875
No 70
>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=36.81 E-value=57 Score=25.74 Aligned_cols=46 Identities=15% Similarity=0.346 Sum_probs=31.7
Q ss_pred CCeEEEEEEeCc-eEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013932 333 DDVQVQFYMMSP-YVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 379 (433)
Q Consensus 333 ~diQlEf~mldP-y~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 379 (433)
+|+..|..+-+- -.+..++..++|+|.++|+ |..-|.|+..|.|.-
T Consensus 22 ~~l~v~V~~PsG~~~~~~v~d~~dGtY~v~yt-P~e~G~h~v~V~~~g 68 (93)
T 2d7n_A 22 GELTGEVRMPSGKTARPNITDNKDGTITVRYA-PTEKGLHQMGIKYDG 68 (93)
T ss_dssp SCEEEEEECTTSCEECCEEEECSSSCEEEEEC-CSSCEEEEEEEEESS
T ss_pred CCEEEEEECCCCCccceEEEECCCCEEEEEEE-ccCCEEEEEEEEECC
Confidence 666666654331 2344455567899999997 555699999999975
No 71
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=36.80 E-value=79 Score=28.14 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=43.9
Q ss_pred CeEEEEEcCcccc--cchhhHHHHhhcCCcEEEEec-----CC-CCCcccccccccccCEEEEeCCCCCcCCCCCCHHHH
Q 013932 30 RRVLVLVDDFAIK--SSHSLYFGSLTSRGFQLEFKL-----AD-DPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASI 101 (433)
Q Consensus 30 ~r~LVl~d~~~~~--~~~S~F~~~L~~rGf~v~~~~-----~~-d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L 101 (433)
.|+||+.-.+... ..-..+.+.+++.|.+++... ++ +.++.-........|.||+..|--- ++ -+..|
T Consensus 2 mkiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y~-~~---~pa~l 77 (192)
T 3f2v_A 2 PKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIYW-FN---CPPLL 77 (192)
T ss_dssp CCEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECBT-TB---CCHHH
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChhh-cC---CCHHH
Confidence 3788888665433 223347788888899888752 11 1112212233455699999999654 21 34567
Q ss_pred HHHHHC
Q 013932 102 VDFVDS 107 (433)
Q Consensus 102 ~~Fid~ 107 (433)
+.|+|+
T Consensus 78 K~~iDr 83 (192)
T 3f2v_A 78 KQWLDE 83 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777775
No 72
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=36.76 E-value=1.7e+02 Score=25.90 Aligned_cols=108 Identities=11% Similarity=0.095 Sum_probs=62.6
Q ss_pred CeEEEEEcCccccc----chhhHHHHhhcCCcEEE-EecCCCCCcccc----------------cccccccCEEEEeCCC
Q 013932 30 RRVLVLVDDFAIKS----SHSLYFGSLTSRGFQLE-FKLADDPNIGLQ----------------RYGQYLYDALVLFCPS 88 (433)
Q Consensus 30 ~r~LVl~d~~~~~~----~~S~F~~~L~~rGf~v~-~~~~~d~~~~L~----------------~~ge~~yd~LII~~p~ 88 (433)
.|+|++.-+..... .-..+.+.+ ..|.+++ .....| +.+. .......|.|||..|.
T Consensus 7 mkIl~I~GS~r~~s~t~~la~~~~~~~-~~g~~v~~~idL~~--lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP~ 83 (199)
T 4hs4_A 7 LHFVTLLGSLRKASFNAAVARALPEIA-PEGIAITPLGSIGT--FPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPE 83 (199)
T ss_dssp EEEEEEECCCSTTCHHHHHHHHHHHHC-CTTEEEEECCCGGG--SCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEECC
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHc-cCCCEEEEEEehhh--cCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcCc
Confidence 47788875543211 111244444 3688888 643322 1111 1124456999999996
Q ss_pred CCcCCCCCCH--HHHHHHHHC------CC-cEEE-EeCCCC------cHHHHHHHHHcCceecCCCCeEEEe
Q 013932 89 VERFGGSIDV--ASIVDFVDS------GH-DLIV-AADSNA------SDLIREVATECGVDFDEDPAAMVID 144 (433)
Q Consensus 89 ~~~~~~~ls~--~~L~~Fid~------GG-NlLv-~~~~~~------~~~lr~ll~elGI~~~p~~~~~VvD 144 (433)
-. .+++. |..+|++.. .| .+.+ .++++. ...+|.++..+|+..-+. ..+.+.
T Consensus 84 Y~---~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsgg~~g~~~a~~~Lr~il~~lg~~~v~~-~~v~i~ 151 (199)
T 4hs4_A 84 YN---YSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQNHLRQSLVFLDAYVLNR-PEAMIG 151 (199)
T ss_dssp BT---TBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECSSSSCSHHHHHHHHHHHHHTTCEECCS-SCEEEC
T ss_pred cC---CCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCCCCcccHHHHHHHHHHHHHcCCEEcCC-CeEEee
Confidence 54 33553 777888765 23 3443 333221 368999999999999985 334554
No 73
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=36.40 E-value=61 Score=27.33 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=52.0
Q ss_pred hHHHHhhcCCcEEEEecCCC--CCc-------ccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCC-CcEEEEeC
Q 013932 47 LYFGSLTSRGFQLEFKLADD--PNI-------GLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG-HDLIVAAD 116 (433)
Q Consensus 47 ~F~~~L~~rGf~v~~~~~~d--~~~-------~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~G-GNlLv~~~ 116 (433)
...+.|.+.||+|-...|+- +++ ++.+- +..-|.+||+-|. + .-.+.+.+-++.| +.+++ -.
T Consensus 31 ~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el-~~~~Dlvii~vp~-~-----~v~~v~~~~~~~g~~~i~i-~~ 102 (145)
T 2duw_A 31 RVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADV-PEKVDMVDVFRNS-E-----AAWGVAQEAIAIGAKTLWL-QL 102 (145)
T ss_dssp HHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTC-SSCCSEEECCSCS-T-----HHHHHHHHHHHHTCCEEEC-CT
T ss_pred HHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHc-CCCCCEEEEEeCH-H-----HHHHHHHHHHHcCCCEEEE-cC
Confidence 45677888999987776664 221 11111 1234888888773 2 2345566666777 45444 34
Q ss_pred CCCcHHHHHHHHHcCceecC
Q 013932 117 SNASDLIREVATECGVDFDE 136 (433)
Q Consensus 117 ~~~~~~lr~ll~elGI~~~p 136 (433)
....+.+.+.+++.|+.+--
T Consensus 103 ~~~~~~l~~~a~~~Gi~~ig 122 (145)
T 2duw_A 103 GVINEQAAVLAREAGLSVVM 122 (145)
T ss_dssp TCCCHHHHHHHHTTTCEEEC
T ss_pred ChHHHHHHHHHHHcCCEEEc
Confidence 45578899999999999984
No 74
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=36.40 E-value=62 Score=28.82 Aligned_cols=59 Identities=24% Similarity=0.316 Sum_probs=41.0
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCC-CCcc------------cccccccccCEEEEeCC
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADD-PNIG------------LQRYGQYLYDALVLFCP 87 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d-~~~~------------L~~~ge~~yd~LII~~p 87 (433)
.+|+++|+-+.-...+.....+-|+..||++++..++. ..+. +..-....||.|||-..
T Consensus 9 ~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG 80 (208)
T 3ot1_A 9 SKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGG 80 (208)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCC
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCC
Confidence 57898888666566777888899999999999987763 2211 22222346898888443
No 75
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=36.29 E-value=1.5e+02 Score=26.14 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=59.0
Q ss_pred CeEEEEEcCcccccchh-----hHHH----HhhcC--CcEEEEecCCCCCccc---------------ccccccccCEEE
Q 013932 30 RRVLVLVDDFAIKSSHS-----LYFG----SLTSR--GFQLEFKLADDPNIGL---------------QRYGQYLYDALV 83 (433)
Q Consensus 30 ~r~LVl~d~~~~~~~~S-----~F~~----~L~~r--Gf~v~~~~~~d~~~~L---------------~~~ge~~yd~LI 83 (433)
.|+|++.-+... ...+ .+.+ .|+++ |.+++.....|-.+.+ ........|.||
T Consensus 12 ~~il~i~GS~r~-~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iv 90 (191)
T 3k1y_A 12 RTLAVISAGLST-PSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLV 90 (191)
T ss_dssp EEEEEEECCCSS-SCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEEE
T ss_pred ceEEEEECCCCC-CCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEEE
Confidence 466666644432 2222 3444 56666 7888875433322211 122234569999
Q ss_pred EeCCCCCcCCCCCCH--HHHHHHHHC----CCcEEEEe-C--CCCc----HHHHHHHHHcCceecCCCCeEE
Q 013932 84 LFCPSVERFGGSIDV--ASIVDFVDS----GHDLIVAA-D--SNAS----DLIREVATECGVDFDEDPAAMV 142 (433)
Q Consensus 84 I~~p~~~~~~~~ls~--~~L~~Fid~----GGNlLv~~-~--~~~~----~~lr~ll~elGI~~~p~~~~~V 142 (433)
|.+|.-- .+++. +.++|.+.. |-.+.+++ + +... ..+|.++..+|+...|. +..+
T Consensus 91 i~sP~Y~---~~~~~~lK~~iD~~~~~~l~gK~~~~v~t~G~~~~~~~~~~~L~~il~~lg~~vv~~-~v~~ 158 (191)
T 3k1y_A 91 VATPVFK---ASYTGLFKMFFDILDTDALTGMPTIIAATAGSARHSLVLDYALRPLLSYMRAVVVPT-GVFA 158 (191)
T ss_dssp EEEECBT---TBSCHHHHHHHHHSCTTTTTTCEEEEEEEESSSTTTTHHHHTHHHHHHHTTCEECSC-CEEE
T ss_pred EEcCccC---CcCcHHHHHHHHHhhhhhcCCCEEEEEEeCCCcchhhHHHHHHHHHHHHCCCEEcCc-EEEe
Confidence 9999654 33444 444444432 33444333 2 1112 23999999999999886 4433
No 76
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=36.07 E-value=1.2e+02 Score=23.54 Aligned_cols=93 Identities=16% Similarity=0.136 Sum_probs=45.8
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcCCc--EEEEecCCCCC--ccccccc-----ccccCEEEEeCCCCCcCCCCCCHH
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGF--QLEFKLADDPN--IGLQRYG-----QYLYDALVLFCPSVERFGGSIDVA 99 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~rGf--~v~~~~~~d~~--~~L~~~g-----e~~yd~LII~~p~~~~~~~~ls~~ 99 (433)
+.|+||+=|+...+ ..+.+.|+..|+ ++... .+.. +.+...+ ...+|.+|+ +.... ..+.-
T Consensus 2 ~~~ilivdd~~~~~---~~l~~~L~~~~~~~~v~~~--~~~~~a~~~l~~~~~~~~~~~~dlvi~-d~~~~----~~~g~ 71 (140)
T 1k68_A 2 HKKIFLVEDNKADI---RLIQEALANSTVPHEVVTV--RDGMEAMAYLRQEGEYANASRPDLILL-XLNLP----KKDGR 71 (140)
T ss_dssp CCEEEEECCCHHHH---HHHHHHHHTCSSCCEEEEE--CSHHHHHHHHTTCGGGGSCCCCSEEEE-CSSCS----SSCHH
T ss_pred CCeEEEEeCCHHHH---HHHHHHHHhcCCCceEEEE--CCHHHHHHHHHcccccccCCCCcEEEE-ecCCC----cccHH
Confidence 45666666655444 356667788898 66543 2221 2222221 145676665 33222 13444
Q ss_pred HHHHHHHC-----CCcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 100 SIVDFVDS-----GHDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 100 ~L~~Fid~-----GGNlLv~~~~~~~~~lr~ll~elGI 132 (433)
.+.+.+.+ .-.++++++....+.... +.+.|+
T Consensus 72 ~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~-~~~~g~ 108 (140)
T 1k68_A 72 EVLAEIKSDPTLKRIPVVVLSTSINEDDIFH-SYDLHV 108 (140)
T ss_dssp HHHHHHHHSTTGGGSCEEEEESCCCHHHHHH-HHHTTC
T ss_pred HHHHHHHcCcccccccEEEEecCCcHHHHHH-HHHhch
Confidence 44444443 234666666655444443 335554
No 77
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=35.89 E-value=47 Score=30.19 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=28.0
Q ss_pred CeEEEEEc-----CcccccchhhHHHHhhcCCcEEEEecCCC
Q 013932 30 RRVLVLVD-----DFAIKSSHSLYFGSLTSRGFQLEFKLADD 66 (433)
Q Consensus 30 ~r~LVl~d-----~~~~~~~~S~F~~~L~~rGf~v~~~~~~d 66 (433)
+|+++|+- +.....+.....+-|+..||++++..++.
T Consensus 7 ~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g 48 (232)
T 1vhq_A 7 KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDK 48 (232)
T ss_dssp CEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 57888886 44455666778888999999999876654
No 78
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=35.57 E-value=85 Score=24.64 Aligned_cols=95 Identities=12% Similarity=0.069 Sum_probs=44.4
Q ss_pred CeEEEEEcCcccccchhhHHHHhhcCC-cEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCC
Q 013932 30 RRVLVLVDDFAIKSSHSLYFGSLTSRG-FQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG 108 (433)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~F~~~L~~rG-f~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~G 108 (433)
.|+||+=|+...+. .+...|++.| |++... .+..-.+..-....+|.+|+ +.......+---.+.|.+.- ..
T Consensus 15 ~~ilivdd~~~~~~---~l~~~L~~~g~~~v~~~--~~~~~a~~~l~~~~~dlvi~-D~~l~~~~g~~~~~~l~~~~-~~ 87 (135)
T 3snk_A 15 KQVALFSSDPNFKR---DVATRLDALAIYDVRVS--ETDDFLKGPPADTRPGIVIL-DLGGGDLLGKPGIVEARALW-AT 87 (135)
T ss_dssp EEEEEECSCHHHHH---HHHHHHHHTSSEEEEEE--CGGGGGGCCCTTCCCSEEEE-EEETTGGGGSTTHHHHHGGG-TT
T ss_pred cEEEEEcCCHHHHH---HHHHHHhhcCCeEEEEe--ccHHHHHHHHhccCCCEEEE-eCCCCCchHHHHHHHHHhhC-CC
Confidence 45555555544443 4566677889 998743 22222333334455776665 32221111111123343321 23
Q ss_pred CcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 109 HDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 109 GNlLv~~~~~~~~~lr~ll~elGI 132 (433)
--++++++....+.... +-+.|+
T Consensus 88 ~~ii~~s~~~~~~~~~~-~~~~g~ 110 (135)
T 3snk_A 88 VPLIAVSDELTSEQTRV-LVRMNA 110 (135)
T ss_dssp CCEEEEESCCCHHHHHH-HHHTTC
T ss_pred CcEEEEeCCCCHHHHHH-HHHcCc
Confidence 45666666554443333 344553
No 79
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=35.23 E-value=55 Score=32.18 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=32.0
Q ss_pred CCCCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCC
Q 013932 27 PTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADD 66 (433)
Q Consensus 27 ~~~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d 66 (433)
...+|++||+-+.-+........+-|+..||++++..++.
T Consensus 10 ~~~~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~ 49 (396)
T 3uk7_A 10 ANSRTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGK 49 (396)
T ss_dssp -CCCEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred hcCCeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3468999999766566677888999999999999987764
No 80
>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=34.97 E-value=79 Score=25.48 Aligned_cols=61 Identities=13% Similarity=0.305 Sum_probs=39.3
Q ss_pred EeCCceEEEEEEEEEeCCeeeeccCCCeEEEEEEeCce---EeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013932 308 RINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY---VLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 379 (433)
Q Consensus 308 ~i~d~v~y~i~i~e~~~~~W~P~~~~diQlEf~mldPy---~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 379 (433)
+++...+|.|+-..- | .+.++++ +.+|- +...++..++|+|.++|+.+. -|.|+..|.|.-
T Consensus 27 ~~~~~~~F~V~~~da--G------~~~l~V~--v~~p~g~~~~~~v~d~~dGty~v~Y~p~~-~G~y~i~V~~~g 90 (115)
T 2d7m_A 27 PASLPVEFTIDARDA--G------EGLLTVQ--ILDPEGKPKKANIRDNGDGTYTVSYLPDM-SGRYTITIKYGG 90 (115)
T ss_dssp ESSSCEEEEEEESSS--C------SSCEEEE--EECTTSCBCCEEEEECSSSCEEEEECCCS-CEEEEEEEEESS
T ss_pred ccCCcEEEEEEECCC--C------CCEEEEE--EECCCCCeeeeEEEECCCCEEEEEEEeCC-CceEEEEEEECC
Confidence 456777777776542 1 1344443 44553 333444457899999997555 599999999964
No 81
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=34.94 E-value=1.5e+02 Score=23.84 Aligned_cols=94 Identities=13% Similarity=0.142 Sum_probs=47.9
Q ss_pred CCCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC
Q 013932 28 TDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (433)
Q Consensus 28 ~~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~ 107 (433)
...|+|++=|+...+. .+.+.|+..||++... .+..-.+..-....+|.+|+ +.... ..+--.+.+.+.+
T Consensus 6 ~~~~ILivdd~~~~~~---~l~~~L~~~g~~v~~~--~~~~~al~~l~~~~~dlii~-D~~l~----~~~g~~~~~~lr~ 75 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAE---HLKHILEETGYQTEHV--RNGREAVRFLSLTRPDLIIS-DVLMP----EMDGYALCRWLKG 75 (154)
T ss_dssp -CCEEEEECSCHHHHH---HHHHHHHTTTCEEEEE--SSHHHHHHHHTTCCCSEEEE-ESCCS----SSCHHHHHHHHHH
T ss_pred CCCcEEEEeCCHHHHH---HHHHHHHHCCCEEEEe--CCHHHHHHHHHhCCCCEEEE-eCCCC----CCCHHHHHHHHHh
Confidence 3567777666654444 4566677789998653 22221233333445776665 33222 1344455555543
Q ss_pred C-----CcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 108 G-----HDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 108 G-----GNlLv~~~~~~~~~lr~ll~elGI 132 (433)
- --++++++....+.... +.+.|+
T Consensus 76 ~~~~~~~pii~~s~~~~~~~~~~-~~~~g~ 104 (154)
T 3gt7_A 76 QPDLRTIPVILLTILSDPRDVVR-SLECGA 104 (154)
T ss_dssp STTTTTSCEEEEECCCSHHHHHH-HHHHCC
T ss_pred CCCcCCCCEEEEECCCChHHHHH-HHHCCC
Confidence 2 23666665554443333 345553
No 82
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=34.03 E-value=2.6e+02 Score=25.43 Aligned_cols=104 Identities=11% Similarity=-0.061 Sum_probs=61.6
Q ss_pred CCCeEEEEEcCc-ccccchh-hHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCC-CcCCCCCCHHHHHHH
Q 013932 28 TDRRVLVLVDDF-AIKSSHS-LYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV-ERFGGSIDVASIVDF 104 (433)
Q Consensus 28 ~~~r~LVl~d~~-~~~~~~S-~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~-~~~~~~ls~~~L~~F 104 (433)
...+++|+|.+. +.-+... .+.+.| .+|++++....++.++. ....++.+|+..|+. +.-.+ -+.+.+.++
T Consensus 39 ~~~kv~IlYgS~tGnte~~A~~La~~l-~~g~~v~v~~l~~~~~~----~l~~~~~vI~~tsTyG~Ge~P-dna~~F~~~ 112 (219)
T 3hr4_A 39 SRVRVTILFATETGKSEALAWDLGALF-SCAFNPKVVCMDKYRLS----CLEEERLLLVVTSTFGNGDCP-GNGEKLKKS 112 (219)
T ss_dssp TSCEEEEEEECSSSHHHHHHHHHHHHH-TTTSEEEEEEGGGCCGG----GGGTCSEEEEEEECBTTTBCC-GGGHHHHHH
T ss_pred cCCcEEEEEECCchHHHHHHHHHHHHH-HcCCCeEEEEcccCCHh----HhccCCeEEEEEeccCCCcCC-HHHHHHHHH
Confidence 567899999775 2222222 344445 57999887655544322 124568999988876 32111 234667777
Q ss_pred HHCC-----C-cEEEEe--CCC------CcHHHHHHHHHcCceecCC
Q 013932 105 VDSG-----H-DLIVAA--DSN------ASDLIREVATECGVDFDED 137 (433)
Q Consensus 105 id~G-----G-NlLv~~--~~~------~~~~lr~ll~elGI~~~p~ 137 (433)
+.+- | +.-|.+ +.. ....+...++++|....-.
T Consensus 113 L~~~~~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~~ 159 (219)
T 3hr4_A 113 LFMLKELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTP 159 (219)
T ss_dssp HHHCCCCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESSC
T ss_pred HHhcchhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEeeC
Confidence 7642 2 233443 222 1577888999999887653
No 83
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=34.01 E-value=57 Score=28.57 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=55.6
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCC-c------------ccccc-cccccCEEEEeCCC--CCcC
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPN-I------------GLQRY-GQYLYDALVLFCPS--VERF 92 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~-~------------~L~~~-ge~~yd~LII~~p~--~~~~ 92 (433)
..|++||+-+.-+..+.....+-|+..||++++..++... + .+.+- ....||.|||-... ...+
T Consensus 3 ~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~l 82 (197)
T 2rk3_A 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNL 82 (197)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHHH
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHHh
Confidence 3678888866556667778889999999999988766421 1 11222 23678988885542 1112
Q ss_pred CCCC-CHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 93 GGSI-DVASIVDFVDSGHDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 93 ~~~l-s~~~L~~Fid~GGNlLv~~~~~~~~~lr~ll~elGI 132 (433)
..+- -.+-|.++.++|. .+.+...+. .+|.+.|+
T Consensus 83 ~~~~~~~~~l~~~~~~gk-~i~aiC~G~-----~~La~aGl 117 (197)
T 2rk3_A 83 SESAAVKEILKEQENRKG-LIATICAGP-----TALLAHEI 117 (197)
T ss_dssp HHCHHHHHHHHHHHHTTC-EEEEETTTH-----HHHHHTTC
T ss_pred hhCHHHHHHHHHHHHcCC-EEEEECHHH-----HHHHHCCC
Confidence 1100 1144555555554 443333332 35666676
No 84
>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=34.01 E-value=65 Score=25.71 Aligned_cols=42 Identities=12% Similarity=0.285 Sum_probs=29.0
Q ss_pred EEEEEeCce---EeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013932 337 VQFYMMSPY---VLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 379 (433)
Q Consensus 337 lEf~mldPy---~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 379 (433)
|+..+.+|- +...++..++|+|.++|+.+ .-|.|+..|.|.-
T Consensus 45 l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~-~~G~y~i~V~~~g 89 (108)
T 2dj4_A 45 LEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPS-QEGPYMVSVKYAD 89 (108)
T ss_dssp EEEEEECSSSCEECCCCEECSSSEEEEEECCS-SCEEEEEEEEESS
T ss_pred EEEEEECCCCCEeeeEEEECCCCEEEEEEEeC-CCeeEEEEEEECC
Confidence 333445664 23344446789999999866 5699999999864
No 85
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=33.62 E-value=1.6e+02 Score=22.60 Aligned_cols=92 Identities=16% Similarity=0.292 Sum_probs=47.3
Q ss_pred CeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCC-
Q 013932 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG- 108 (433)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~G- 108 (433)
.|+||+=|+...+. .+...|+..||++... .+..-.+..-....+|.+|+ +..-. ..+--.+.+.+.+.
T Consensus 3 ~~ILivdd~~~~~~---~l~~~l~~~g~~v~~~--~~~~~al~~l~~~~~dlvll-D~~~p----~~~g~~~~~~l~~~~ 72 (122)
T 3gl9_A 3 KKVLLVDDSAVLRK---IVSFNLKKEGYEVIEA--ENGQIALEKLSEFTPDLIVL-XIMMP----VMDGFTVLKKLQEKE 72 (122)
T ss_dssp CEEEEECSCHHHHH---HHHHHHHHTTCEEEEE--SSHHHHHHHHTTBCCSEEEE-CSCCS----SSCHHHHHHHHHTST
T ss_pred ceEEEEeCCHHHHH---HHHHHHHHCCcEEEEe--CCHHHHHHHHHhcCCCEEEE-eccCC----CCcHHHHHHHHHhcc
Confidence 46666656654444 3455667789998743 33222233333445675544 44322 23455555556432
Q ss_pred ----CcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 109 ----HDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 109 ----GNlLv~~~~~~~~~lr~ll~elGI 132 (433)
-.++++++....+ ...-+.+.|.
T Consensus 73 ~~~~~pii~~s~~~~~~-~~~~~~~~Ga 99 (122)
T 3gl9_A 73 EWKRIPVIVLTAKGGEE-DESLALSLGA 99 (122)
T ss_dssp TTTTSCEEEEESCCSHH-HHHHHHHTTC
T ss_pred cccCCCEEEEecCCchH-HHHHHHhcCh
Confidence 3466666555443 3344555664
No 86
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=33.43 E-value=1.4e+02 Score=25.32 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=35.6
Q ss_pred cccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC----CCcEEEEeCC---CCcHHHHHHHHHc-Cceec
Q 013932 75 GQYLYDALVLFCPSVERFGGSIDVASIVDFVDS----GHDLIVAADS---NASDLIREVATEC-GVDFD 135 (433)
Q Consensus 75 ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~----GGNlLv~~~~---~~~~~lr~ll~el-GI~~~ 135 (433)
....||.|||-.|.-. +.+ +..+.+|+++ |..+.+.+.. +....++.+-+.| |..+.
T Consensus 75 ~l~~yd~iilG~P~~~---g~~-~~~~~~fl~~~~l~gk~v~~f~t~g~~~~g~~~~~l~~~l~~~~~~ 139 (162)
T 3klb_A 75 HPEKYEVLFVGFPVWW---YIA-PTIINTFLESYDFAGKIVVPFATSGGSGIGNCEKNLHKAYPDIVWK 139 (162)
T ss_dssp CGGGCSEEEEEEECBT---TBC-CHHHHHHHHTSCCTTCEEEEEEECSSCCSHHHHHHHHHHCTTSEEC
T ss_pred ChhhCCEEEEEccccc---CCC-CHHHHHHHHhcCCCCCEEEEEEEeCCCCccHHHHHHHHHcCCCEee
Confidence 4556899999999764 323 4678889986 5566654432 3345666666655 44443
No 87
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=32.94 E-value=69 Score=27.32 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=40.6
Q ss_pred ccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC-------CCcEEEEe-CCCC------cHHHHHHHHHcCceecCCCCeE
Q 013932 76 QYLYDALVLFCPSVERFGGSIDVASIVDFVDS-------GHDLIVAA-DSNA------SDLIREVATECGVDFDEDPAAM 141 (433)
Q Consensus 76 e~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~-------GGNlLv~~-~~~~------~~~lr~ll~elGI~~~p~~~~~ 141 (433)
...+|.+|+..|.-. +++ +..|+.|+|. |..+.+++ ..+. .+.+|.++.++|+.+.+. .+
T Consensus 61 i~~aD~ii~~tP~y~---~~~-p~~lk~~lD~l~~~~~~gK~~~~~~~sgg~~g~~~a~~~l~~~l~~~g~~~v~~--~v 134 (174)
T 3gfs_A 61 VTKADAIVLLSPEYH---SGM-SGALKNALDFLSSEQFKYKPVALLAVAGGGDGGINALNNMRTVMRGVYANVIPK--QL 134 (174)
T ss_dssp HHHCSSEEEEEECSS---SSC-CHHHHHHHHTCCHHHHTTCEEEEEEECCSTTCSHHHHHHHHHHHHHTTCEEEEE--EE
T ss_pred HHHCCEEEEEcCCcC---CCC-CHHHHHHHHHhCHhhhCCCcEEEEEECCCChhHHHHHHHHHHHHHHcCCEEecc--eE
Confidence 346799999999764 223 3456666653 44455443 3222 467999999999999885 34
Q ss_pred EEe
Q 013932 142 VID 144 (433)
Q Consensus 142 VvD 144 (433)
.+.
T Consensus 135 ~i~ 137 (174)
T 3gfs_A 135 VLK 137 (174)
T ss_dssp EEC
T ss_pred Eec
Confidence 554
No 88
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=32.72 E-value=88 Score=27.45 Aligned_cols=107 Identities=12% Similarity=0.204 Sum_probs=60.2
Q ss_pred eEEEEEcCcc-cccchhhHHHHhhcCCcEEEEecCCCCCcccc--cccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC
Q 013932 31 RVLVLVDDFA-IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQ--RYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (433)
Q Consensus 31 r~LVl~d~~~-~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~--~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~ 107 (433)
|+||+.-.+. ..+.-..++....+...+++.....+ ..++. .......|.||+..|--- ++ -+..|+.|+|+
T Consensus 2 kiLii~ghP~~~~S~~~~~l~~~~~~~~~v~v~dL~~-~~D~~~~~~~l~~aD~iV~~~P~y~-~~---~pa~lK~~iDr 76 (177)
T 3ha2_A 2 QTLIIVAHPELARSNTQPFFKAAIENFSNVTWHPLVA-DFNVEQEQSLLLQNDRIILEFPLYW-YS---APALLKQWMDT 76 (177)
T ss_dssp CEEEEECCTTTTTCSSHHHHHHHHTTCTTEEEEECCT-TCCHHHHHHHHHTCSEEEEEEECBT-TB---CCHHHHHHHHH
T ss_pred eEEEEEcCCCcccCHHHHHHHHHHhcCCCEEEEECCC-cccHHHHHHHHHhCCEEEEECChhh-cc---CCHHHHHHHHH
Confidence 6888886665 33333345555555556677654433 22332 333445599999999643 21 34567777765
Q ss_pred ---------------CCcEEEEeCCCC---------------cH---HHHHHHHHcCceecCCCCeEEEec
Q 013932 108 ---------------GHDLIVAADSNA---------------SD---LIREVATECGVDFDEDPAAMVIDH 145 (433)
Q Consensus 108 ---------------GGNlLv~~~~~~---------------~~---~lr~ll~elGI~~~p~~~~~VvDh 145 (433)
|-.++++...+. .+ .++..+.-||++..+- .++..
T Consensus 77 v~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~~---~~~~g 144 (177)
T 3ha2_A 77 VMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLPI---LAVHQ 144 (177)
T ss_dssp HSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECCC---EEEES
T ss_pred HhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeCe---EEEeC
Confidence 234443322111 12 2355688999999885 45543
No 89
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=32.30 E-value=56 Score=30.29 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=28.7
Q ss_pred CeEEEEEc-----CcccccchhhHHHHhhcCCcEEEEecCCC
Q 013932 30 RRVLVLVD-----DFAIKSSHSLYFGSLTSRGFQLEFKLADD 66 (433)
Q Consensus 30 ~r~LVl~d-----~~~~~~~~S~F~~~L~~rGf~v~~~~~~d 66 (433)
+|++||+- +-.+..+.....+-|+..||++++..|+.
T Consensus 24 kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~ 65 (242)
T 3l3b_A 24 LNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNK 65 (242)
T ss_dssp CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 68999995 33445566778889999999999977764
No 90
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=32.20 E-value=1.1e+02 Score=25.86 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=34.8
Q ss_pred ccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC------------------CCcEEEEeC-CC--------CcHHHHHHHH
Q 013932 76 QYLYDALVLFCPSVERFGGSIDVASIVDFVDS------------------GHDLIVAAD-SN--------ASDLIREVAT 128 (433)
Q Consensus 76 e~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~------------------GGNlLv~~~-~~--------~~~~lr~ll~ 128 (433)
...+|.||+..|--- .+++ ..|+.|+|+ |..+.+++. .. ....++.++.
T Consensus 69 l~~aD~ii~~~P~y~---~~~p-~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~ 144 (184)
T 1rli_A 69 ILQCHILIFATPIYW---FGMS-GTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFH 144 (184)
T ss_dssp HHTCSEEEEEEECBT---TBCC-HHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHH
T ss_pred HHhCCEEEEEeCccc---cCCc-HHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHH
Confidence 456799999999654 2233 345555553 344553332 11 1356788899
Q ss_pred HcCceecC
Q 013932 129 ECGVDFDE 136 (433)
Q Consensus 129 elGI~~~p 136 (433)
.+|+...+
T Consensus 145 ~~G~~~~~ 152 (184)
T 1rli_A 145 FMGMSFKG 152 (184)
T ss_dssp HHTCEEEE
T ss_pred HcCCccce
Confidence 99998875
No 91
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=31.94 E-value=2.1e+02 Score=24.82 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=42.6
Q ss_pred eEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCC--C---cCCCCCCHHHHHHHH
Q 013932 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV--E---RFGGSIDVASIVDFV 105 (433)
Q Consensus 31 r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~--~---~~~~~ls~~~L~~Fi 105 (433)
|++|+ |.. ...+..+.+.|+..|.++....+ ++ ....+|.|||-.|.. . .+......+.|.+++
T Consensus 4 ~I~ii-d~~--~~~~~~~~~~l~~~G~~~~~~~~-~~-------~l~~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~ 72 (200)
T 1ka9_H 4 KALLI-DYG--SGNLRSAAKALEAAGFSVAVAQD-PK-------AHEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHL 72 (200)
T ss_dssp EEEEE-CSS--CSCHHHHHHHHHHTTCEEEEESS-TT-------SCSSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHH
T ss_pred EEEEE-eCC--CccHHHHHHHHHHCCCeEEEecC-hH-------HcccCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHH
Confidence 55555 532 24456688999999999987643 22 123579999944322 1 111112457788888
Q ss_pred HCCCcEE
Q 013932 106 DSGHDLI 112 (433)
Q Consensus 106 d~GGNlL 112 (433)
++|.-+|
T Consensus 73 ~~~~Pil 79 (200)
T 1ka9_H 73 ERGLPFL 79 (200)
T ss_dssp HTTCCEE
T ss_pred HcCCeEE
Confidence 8876655
No 92
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=31.78 E-value=2.2e+02 Score=24.94 Aligned_cols=111 Identities=10% Similarity=0.139 Sum_probs=61.4
Q ss_pred CeEEEEEcCcccccchhhHH---HHhhcCCcEEE-EecCCCCCc---------------ccccccccccCEEEEeCCCCC
Q 013932 30 RRVLVLVDDFAIKSSHSLYF---GSLTSRGFQLE-FKLADDPNI---------------GLQRYGQYLYDALVLFCPSVE 90 (433)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~F~---~~L~~rGf~v~-~~~~~d~~~---------------~L~~~ge~~yd~LII~~p~~~ 90 (433)
-|+|++.-+......-.... ..+...|++++ .....|-.+ .-...-....|.+||..|.-.
T Consensus 5 mkil~I~GS~r~~s~t~~l~~~~~~~~~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~~sP~y~ 84 (193)
T 3svl_A 5 LQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTPEYN 84 (193)
T ss_dssp EEEEEEECCCSTTCHHHHHHHHGGGTSCTTEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEEEECCBT
T ss_pred CEEEEEEccCCCCCHHHHHHHHHHHHccCCCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEEEecccC
Confidence 46777775543221111233 33334688888 543333110 001122345599999999654
Q ss_pred cCCCCCCH--HHHHHHHHC-------CCcEEEEe-CCCC------cHHHHHHHHHcCceecCCCCeEEEe
Q 013932 91 RFGGSIDV--ASIVDFVDS-------GHDLIVAA-DSNA------SDLIREVATECGVDFDEDPAAMVID 144 (433)
Q Consensus 91 ~~~~~ls~--~~L~~Fid~-------GGNlLv~~-~~~~------~~~lr~ll~elGI~~~p~~~~~VvD 144 (433)
.+++. +.++|++.. |--+.+++ +++. ...+|.++..+|+...|. ....+.
T Consensus 85 ---~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~g~~gg~~a~~~Lr~~l~~lg~~v~~~-~~~~~~ 150 (193)
T 3svl_A 85 ---YSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNK-PEFMGG 150 (193)
T ss_dssp ---TBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECSSTTTTHHHHHHHHHHHHHTTCEECCS-SCEEET
T ss_pred ---CCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCCCCcchHHHHHHHHHHHHHCCCEEcCC-CeEeec
Confidence 33444 777777753 23344333 3321 367999999999999986 334444
No 93
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=31.71 E-value=1.1e+02 Score=24.01 Aligned_cols=97 Identities=12% Similarity=0.110 Sum_probs=48.2
Q ss_pred CCCCCeEEEEEcCcccccchhhHHHHhhcCCc--EEEEecCCCCCcccccc-c-----c--cccCEEEEeCCCCCcCCCC
Q 013932 26 NPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGF--QLEFKLADDPNIGLQRY-G-----Q--YLYDALVLFCPSVERFGGS 95 (433)
Q Consensus 26 s~~~~r~LVl~d~~~~~~~~S~F~~~L~~rGf--~v~~~~~~d~~~~L~~~-g-----e--~~yd~LII~~p~~~~~~~~ 95 (433)
+....|+|++=|+...+. .+...|+..|+ ++....-.++.+.+... + . ..+|.+|+ +.... .
T Consensus 3 ~~~~~~iLivdd~~~~~~---~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~-D~~l~----~ 74 (149)
T 1k66_A 3 GNATQPLLVVEDSDEDFS---TFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILL-DLNLP----G 74 (149)
T ss_dssp SCTTSCEEEECCCHHHHH---HHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEE-CSCCS----S
T ss_pred CCCCccEEEEECCHHHHH---HHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEE-ECCCC----C
Confidence 345567777666654443 46667778898 66543111111222121 1 0 45676665 33222 1
Q ss_pred CCHHHHHHHHHCC-----CcEEEEeCCCCcHHHHHHHHHcC
Q 013932 96 IDVASIVDFVDSG-----HDLIVAADSNASDLIREVATECG 131 (433)
Q Consensus 96 ls~~~L~~Fid~G-----GNlLv~~~~~~~~~lr~ll~elG 131 (433)
.+--.+.+.+.+- -.++++++....+..... .+.|
T Consensus 75 ~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~-~~~g 114 (149)
T 1k66_A 75 TDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEIC-YSYS 114 (149)
T ss_dssp SCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHH-HHTT
T ss_pred CCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHH-HHCC
Confidence 3555566666543 246666665554444433 3555
No 94
>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.39 E-value=33 Score=28.09 Aligned_cols=61 Identities=15% Similarity=0.304 Sum_probs=38.4
Q ss_pred EeCCceEEEEEEEEEeCCeeeeccCCCeEEEEEEeCce---EeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013932 308 RINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY---VLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 379 (433)
Q Consensus 308 ~i~d~v~y~i~i~e~~~~~W~P~~~~diQlEf~mldPy---~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 379 (433)
+++...+|.|+-..- | .++++++ +.+|- ++..++..++|+|.++|+ |..-|.|+..|.|..
T Consensus 37 ~~g~~~~F~V~~~da--G------~~~l~v~--v~~p~g~~~~~~v~d~~dGty~v~Y~-p~~~G~y~i~V~~~g 100 (119)
T 2e9j_A 37 PASLPVDFAIDARDA--G------EGLLAVQ--ITDQEGKPKRAIVHDNKDGTYAVTYI-PDKTGRYMIGVTYGG 100 (119)
T ss_dssp ETTSCEEEEEEESSC--C------CCCEECC--EECTTCCCCCEEEEECCSSEEEEEEC-CCSCSEEEECCEESS
T ss_pred ecCCcEEEEEEECCC--C------CCeEEEE--EECCCCCEEEEEEEECCCCEEEEEEE-eCCCEEEEEEEEECC
Confidence 456666666665431 1 1333333 33543 233444467899999999 566999999999864
No 95
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=31.18 E-value=1.4e+02 Score=27.64 Aligned_cols=99 Identities=11% Similarity=-0.006 Sum_probs=55.8
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCC--CC--CHHHHHHH
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGG--SI--DVASIVDF 104 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~--~l--s~~~L~~F 104 (433)
.+|+|||.... -+....+.+.|+++|++++...++.... .......||.|||.......... .+ ..+.|.++
T Consensus 3 ~~~vliiqh~~--~e~~~~i~~~l~~~G~~v~v~~~~~~~~--~p~~~~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~ 78 (250)
T 3m3p_A 3 LKPVMIIQFSA--SEGPGHFGDFLAGEHIPFQVLRMDRSDP--LPAEIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDA 78 (250)
T ss_dssp CCCEEEEESSS--SCCCHHHHHHHHHTTCCEEEEEGGGTCC--CCSCGGGSSEEEECCCSSCTTSCCTTHHHHHHHHHHH
T ss_pred CCeEEEEECCC--CCCHHHHHHHHHHCCCeEEEEeccCCCc--CcCccccCCEEEECCCCCcccccchHHHHHHHHHHHH
Confidence 46788886442 3455577888999999999764332210 01123457999987654321211 11 12445556
Q ss_pred HHCCCcEEEEeCCCCcHHHHHHHHHcCceecC
Q 013932 105 VDSGHDLIVAADSNASDLIREVATECGVDFDE 136 (433)
Q Consensus 105 id~GGNlLv~~~~~~~~~lr~ll~elGI~~~p 136 (433)
++.|--+|=. =-+..-++..+|-.+.+
T Consensus 79 ~~~~~PvlGI-----C~G~Qll~~~lGG~V~~ 105 (250)
T 3m3p_A 79 VAQRVPVIGH-----CLGGQLLAKAMGGEVTD 105 (250)
T ss_dssp HHHTCCEEEE-----THHHHHHHHHTTCCEEE
T ss_pred HHcCCCEEEE-----CHHHHHHHHHhCCEEEe
Confidence 7777666622 23556677777744433
No 96
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=30.74 E-value=72 Score=37.89 Aligned_cols=70 Identities=19% Similarity=0.416 Sum_probs=52.3
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeeccCCCeEEEEEEeCceE----eeccccCCCceEE-EEEecCCc--eeeeEEEE
Q 013932 303 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPYV----LKTLSTDQKGHYS-AEFKVPDV--YGVFQFKV 375 (433)
Q Consensus 303 ~~~~Y~i~d~v~y~i~i~e~~~~~W~P~~~~diQlEf~mldPy~----R~~l~~~~~~~y~-~~f~~PD~--hGvf~f~v 375 (433)
+...||=.|.|.|.+-+- +.++.|.. +.+.++ ..||-- |..++. ..|.|+ .+|+||+. -|.|+.++
T Consensus 131 DR~iYrPGqtV~~r~i~~---d~~~~p~~-~~v~v~--l~dP~G~~i~~~~~~~-~~G~~~~~~f~Lp~~~~~G~w~I~v 203 (1676)
T 3cu7_A 131 DKPVYTPDQSVKVRVYSL---NDDLKPAK-RETVLT--FIDPEGSEVDMVEEID-HIGIISFPDFKIPSNPRYGMWTIKA 203 (1676)
T ss_dssp SCSEECTTCEECEEEEEE---CTTCSCCC-CCEEEE--EEETTTEECCCEEECC-SSSEEECCCEECCSSCCCEEEEEEE
T ss_pred CCCccCCCCEEEEEEEEE---CCCCcccc-cceEEE--EECCCCCEEEEEeeec-CCCceecceeeCCCCccccceEEEE
Confidence 455799999999988654 36788965 455544 469853 233343 789999 99999998 79999999
Q ss_pred eeee
Q 013932 376 EYQR 379 (433)
Q Consensus 376 ~Y~R 379 (433)
.+..
T Consensus 204 ~~~~ 207 (1676)
T 3cu7_A 204 KYKE 207 (1676)
T ss_dssp EBSS
T ss_pred EecC
Confidence 9853
No 97
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=30.20 E-value=1.7e+02 Score=25.89 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=28.0
Q ss_pred CeEEEEEcC----------cccccchhhHHHHhhcCCcEEEEecCCCC
Q 013932 30 RRVLVLVDD----------FAIKSSHSLYFGSLTSRGFQLEFKLADDP 67 (433)
Q Consensus 30 ~r~LVl~d~----------~~~~~~~S~F~~~L~~rGf~v~~~~~~d~ 67 (433)
+|+|||+-+ --...+.....+-|+..||++++..++..
T Consensus 6 ~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~ 53 (224)
T 1u9c_A 6 KRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGG 53 (224)
T ss_dssp CEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCB
T ss_pred ceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 588888862 22335677788899999999999776543
No 98
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=28.88 E-value=66 Score=25.35 Aligned_cols=91 Identities=19% Similarity=0.215 Sum_probs=45.1
Q ss_pred CCCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCC-HHHHHHHHH
Q 013932 28 TDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSID-VASIVDFVD 106 (433)
Q Consensus 28 ~~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls-~~~L~~Fid 106 (433)
.+.|+||+=|+...+. .+...|+..||++... .+..-.+..-....+|.+| + |..+. ++ .+.|.+.
T Consensus 17 ~~~~ilivdd~~~~~~---~l~~~L~~~g~~v~~~--~~~~~al~~l~~~~~dlvi-~-~~~~g----~~~~~~l~~~-- 83 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGG---EIEKGLNVKGFMADVT--ESLEDGEYLMDIRNYDLVM-V-SDKNA----LSFVSRIKEK-- 83 (137)
T ss_dssp TCSEEEEECSCHHHHH---HHHHHHHHTTCEEEEE--SCHHHHHHHHHHSCCSEEE-E-CSTTH----HHHHHHHHHH--
T ss_pred CCCeEEEEeCCHHHHH---HHHHHHHHcCcEEEEe--CCHHHHHHHHHcCCCCEEE-E-cCccH----HHHHHHHHhc--
Confidence 3567776656554444 4556667789998743 2221122222233578777 2 22221 11 1444443
Q ss_pred C-CCcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 107 S-GHDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 107 ~-GGNlLv~~~~~~~~~lr~ll~elGI 132 (433)
. .-.++++++....+.... +.+.|+
T Consensus 84 ~~~~~ii~ls~~~~~~~~~~-~~~~g~ 109 (137)
T 2pln_A 84 HSSIVVLVSSDNPTSEEEVH-AFEQGA 109 (137)
T ss_dssp STTSEEEEEESSCCHHHHHH-HHHTTC
T ss_pred CCCccEEEEeCCCCHHHHHH-HHHcCC
Confidence 3 556776666555444433 335553
No 99
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=28.42 E-value=1.2e+02 Score=28.13 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=27.4
Q ss_pred CeEEEEEcCccc------------ccchhhHHHHhhcCCcEEEEecCCC
Q 013932 30 RRVLVLVDDFAI------------KSSHSLYFGSLTSRGFQLEFKLADD 66 (433)
Q Consensus 30 ~r~LVl~d~~~~------------~~~~S~F~~~L~~rGf~v~~~~~~d 66 (433)
+|+||++-+... ......-++.|++.||+|++.+|+.
T Consensus 10 kkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g 58 (247)
T 3n7t_A 10 RKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETG 58 (247)
T ss_dssp SEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 789999976311 2345567889999999999976653
No 100
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=28.42 E-value=1.3e+02 Score=27.15 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=54.6
Q ss_pred eEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCc--CC---CCC----CHHHH
Q 013932 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVER--FG---GSI----DVASI 101 (433)
Q Consensus 31 r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~--~~---~~l----s~~~L 101 (433)
|++||.-.. -+....|...|+++|++++...+.... .+ ......||.|||....... .. +-+ ..+.|
T Consensus 2 ~i~vi~h~~--~e~~g~~~~~l~~~g~~~~~~~~~~~~-~~-p~~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i 77 (236)
T 3l7n_A 2 RIHFILHET--FEAPGAYLAWAALRGHDVSMTKVYRYE-KL-PKDIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLI 77 (236)
T ss_dssp EEEEEECCT--TSCCHHHHHHHHHTTCEEEEEEGGGTC-CC-CSCGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHH
T ss_pred eEEEEeCCC--CCCchHHHHHHHHCCCeEEEEeeeCCC-CC-CCCccccCEEEECCCCCCcccccccCcccchHHHHHHH
Confidence 677777443 355667888899999999875332111 01 1123457999997754321 11 112 23556
Q ss_pred HHHHHCCCcEE-EEeCCCCcHHHHHHHHHcCceec
Q 013932 102 VDFVDSGHDLI-VAADSNASDLIREVATECGVDFD 135 (433)
Q Consensus 102 ~~Fid~GGNlL-v~~~~~~~~~lr~ll~elGI~~~ 135 (433)
.+.+++|--+| |- =+..-++..+|-...
T Consensus 78 ~~~~~~~~PvLGIC------lG~QlL~~~~Gg~v~ 106 (236)
T 3l7n_A 78 QKAAKSEKIIVGVC------LGAQLMGVAYGADYL 106 (236)
T ss_dssp HHHHHTTCEEEEET------HHHHHHHHHTTCCCE
T ss_pred HHHHHcCCCEEEEc------hHHHHHHHHhCCEEe
Confidence 67777776666 32 245567777775443
No 101
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=28.30 E-value=1.1e+02 Score=24.10 Aligned_cols=92 Identities=13% Similarity=0.141 Sum_probs=45.2
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC-
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS- 107 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~- 107 (433)
..|+||+=|+...+. .+...|++.||++... .+..-.+..-....+|.+|+=. ... .+.-.+.+.+.+
T Consensus 4 ~~~iLivdd~~~~~~---~l~~~L~~~g~~v~~~--~~~~~a~~~l~~~~~dlvi~d~--~~~----~~g~~~~~~l~~~ 72 (142)
T 2qxy_A 4 TPTVMVVDESRITFL---AVKNALEKDGFNVIWA--KNEQEAFTFLRREKIDLVFVDV--FEG----EESLNLIRRIREE 72 (142)
T ss_dssp CCEEEEECSCHHHHH---HHHHHHGGGTCEEEEE--SSHHHHHHHHTTSCCSEEEEEC--TTT----HHHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHH---HHHHHHHhCCCEEEEE--CCHHHHHHHHhccCCCEEEEeC--CCC----CcHHHHHHHHHHH
Confidence 346666656554443 4566677789998743 2222123323334578777643 221 223333333332
Q ss_pred --CCcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 108 --GHDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 108 --GGNlLv~~~~~~~~~lr~ll~elGI 132 (433)
.-.++++++....+... -+.+.|+
T Consensus 73 ~~~~pii~ls~~~~~~~~~-~~~~~g~ 98 (142)
T 2qxy_A 73 FPDTKVAVLSAYVDKDLII-NSVKAGA 98 (142)
T ss_dssp CTTCEEEEEESCCCHHHHH-HHHHHTC
T ss_pred CCCCCEEEEECCCCHHHHH-HHHHCCc
Confidence 33466666555443333 3445554
No 102
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=28.19 E-value=98 Score=26.30 Aligned_cols=83 Identities=12% Similarity=0.126 Sum_probs=57.0
Q ss_pred cCcCceEEEeeeEEEecCCCC-CCcceEeCC----ceEEEEE--EEEEeCCeeeeccCCC-eEEEEEEeCceEeecccc-
Q 013932 282 FHERGHLKAVNVRHHKVGESD-EPAIYRIND----DLEYSVE--IYEWSGTSWEPYVSDD-VQVQFYMMSPYVLKTLST- 352 (433)
Q Consensus 282 F~e~gvLr~~~~~H~~~~~~~-~~~~Y~i~d----~v~y~i~--i~e~~~~~W~P~~~~d-iQlEf~mldPy~R~~l~~- 352 (433)
.|.+-|+||+++.-+|.+++. +...+.|+- .+.++-. =.++.+++|-|.-.+. +++-|.. | ...+.|++
T Consensus 10 ~~gd~vwkIs~F~~RKpeGty~nsvsFnI~aTn~gtldftCsa~ad~~eD~~~Y~CGens~~sFsf~s-d-~~gLll~~~ 87 (133)
T 3v0r_A 10 TEGDYVWKISEFYGRKPEGTYYNSLGFNIKATNGGTLDFTCSAQADKLEDHKWYSCGENSFMDFSFDS-D-RSGLLLKQK 87 (133)
T ss_dssp CCCTTEEEEEEEEEEETTSSSCSEEEEEEEESSSCCCEEEEEEECSSCCTTCCEESSSSCSCEEEEEG-G-GTEEEEEEE
T ss_pred cCCceEEEeeeeeeEcCCCCceeeEEEEEEecCCCceeeeEeccCCCCccCceEECCCCceEEEEEEc-c-cccEEEEee
Confidence 356679999999999998775 555566643 3333333 3456778999987777 8999887 2 23355554
Q ss_pred -CCCceEEEEEecCC
Q 013932 353 -DQKGHYSAEFKVPD 366 (433)
Q Consensus 353 -~~~~~y~~~f~~PD 366 (433)
...-.|..+-.||+
T Consensus 88 ~s~~~~~~Gt~~iP~ 102 (133)
T 3v0r_A 88 VSDDITYVATATLPN 102 (133)
T ss_dssp CSSSCEEEEEEECCE
T ss_pred cCCCeeEEEeeccch
Confidence 34556888889986
No 103
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=27.97 E-value=1.3e+02 Score=23.64 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=43.9
Q ss_pred CeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC--
Q 013932 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS-- 107 (433)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~-- 107 (433)
.|+|++=|+...+. .+...|+..||++....-.++.+.........+|.+|+ +.... ..+.-.+.+.+.+
T Consensus 4 ~~ilivdd~~~~~~---~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~-d~~l~----~~~g~~~~~~l~~~~ 75 (143)
T 3jte_A 4 AKILVIDDESTILQ---NIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVIT-DMKMP----KLSGMDILREIKKIT 75 (143)
T ss_dssp CEEEEECSCHHHHH---HHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEE-ESCCS----SSCHHHHHHHHHHHC
T ss_pred CEEEEEcCCHHHHH---HHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEE-eCCCC----CCcHHHHHHHHHHhC
Confidence 35555555544343 45666777899987532111112222222345676665 33222 1333333333332
Q ss_pred -CCcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 108 -GHDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 108 -GGNlLv~~~~~~~~~lr~ll~elGI 132 (433)
.-.++++++....+.... +-+.|+
T Consensus 76 ~~~~ii~ls~~~~~~~~~~-~~~~g~ 100 (143)
T 3jte_A 76 PHMAVIILTGHGDLDNAIL-AMKEGA 100 (143)
T ss_dssp TTCEEEEEECTTCHHHHHH-HHHTTC
T ss_pred CCCeEEEEECCCCHHHHHH-HHHhCc
Confidence 345666665554443333 445563
No 104
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=27.95 E-value=1.1e+02 Score=27.90 Aligned_cols=37 Identities=16% Similarity=0.410 Sum_probs=26.9
Q ss_pred CeEEEEEcCcc------------cccchhhHHHHhhcCCcEEEEecCCC
Q 013932 30 RRVLVLVDDFA------------IKSSHSLYFGSLTSRGFQLEFKLADD 66 (433)
Q Consensus 30 ~r~LVl~d~~~------------~~~~~S~F~~~L~~rGf~v~~~~~~d 66 (433)
+|+||++-+.. ...+.....+-|+..||+|++..|+.
T Consensus 4 ~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g 52 (243)
T 1rw7_A 4 KKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETG 52 (243)
T ss_dssp CEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred ceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 58999995422 12456678888999999999987654
No 105
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=27.81 E-value=56 Score=28.15 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=41.5
Q ss_pred cchhhHHHHhhcCCcEEEEecCC---------CCC----cccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC-C
Q 013932 43 SSHSLYFGSLTSRGFQLEFKLAD---------DPN----IGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS-G 108 (433)
Q Consensus 43 ~~~S~F~~~L~~rGf~v~~~~~~---------d~~----~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~-G 108 (433)
+....|.+.|.+.||++..+... +.+ ++..+.. +.+|++||++.-++ |-+ -.+.|.+ + |
T Consensus 61 ~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a-~~~d~~vLvSgD~D-F~p--lv~~lr~---~~G 133 (165)
T 2qip_A 61 PKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIA-PDVDRVILVSGDGD-FSL--LVERIQQ---RYN 133 (165)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHG-GGCSEEEEECCCGG-GHH--HHHHHHH---HHC
T ss_pred hhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhh-ccCCEEEEEECChh-HHH--HHHHHHH---HcC
Confidence 45567999999999998764321 111 1111222 56788888877655 411 1133333 2 6
Q ss_pred CcEEEEeCCC-CcHHHH
Q 013932 109 HDLIVAADSN-ASDLIR 124 (433)
Q Consensus 109 GNlLv~~~~~-~~~~lr 124 (433)
-.+.+.+.+. .++.++
T Consensus 134 ~~V~v~g~~~~~s~~L~ 150 (165)
T 2qip_A 134 KKVTVYGVPRLTSQTLI 150 (165)
T ss_dssp CEEEEEECGGGSCHHHH
T ss_pred cEEEEEeCCCcChHHHH
Confidence 6777666543 344443
No 106
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=27.70 E-value=1.5e+02 Score=26.03 Aligned_cols=37 Identities=5% Similarity=0.070 Sum_probs=23.7
Q ss_pred eEEEEEcCccc-----ccchhhHHHHhhcC--CcEEEEecCCCC
Q 013932 31 RVLVLVDDFAI-----KSSHSLYFGSLTSR--GFQLEFKLADDP 67 (433)
Q Consensus 31 r~LVl~d~~~~-----~~~~S~F~~~L~~r--Gf~v~~~~~~d~ 67 (433)
|+|++.-+... +..-..|.+.|+++ |.+++.....+.
T Consensus 3 kiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~ 46 (212)
T 3r6w_A 3 RILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRV 46 (212)
T ss_dssp CEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSS
T ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 67887755432 12223588888887 999998654443
No 107
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=27.65 E-value=1.3e+02 Score=23.53 Aligned_cols=94 Identities=10% Similarity=0.025 Sum_probs=46.4
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhc-CCcEEEEecCCCCCcccccccc-cccCEEEEeCCCCCcCCCCCCHHHHHHHHH
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTS-RGFQLEFKLADDPNIGLQRYGQ-YLYDALVLFCPSVERFGGSIDVASIVDFVD 106 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~-rGf~v~~~~~~d~~~~L~~~ge-~~yd~LII~~p~~~~~~~~ls~~~L~~Fid 106 (433)
..|+||+=|+...+. .+...|++ .||++... .+..-.+..-.. ..+|.+|+ +.. +++..+--.+.+.+.
T Consensus 4 ~~~ilivdd~~~~~~---~l~~~L~~~~~~~v~~~--~~~~~a~~~l~~~~~~dlvi~-D~~---l~~~~~g~~~~~~l~ 74 (140)
T 3lua_A 4 DGTVLLIDYFEYERE---KTKIIFDNIGEYDFIEV--ENLKKFYSIFKDLDSITLIIM-DIA---FPVEKEGLEVLSAIR 74 (140)
T ss_dssp CCEEEEECSCHHHHH---HHHHHHHHHCCCEEEEE--CSHHHHHTTTTTCCCCSEEEE-CSC---SSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHH---HHHHHHHhccCccEEEE--CCHHHHHHHHhcCCCCcEEEE-eCC---CCCCCcHHHHHHHHH
Confidence 346666655554444 45556666 79998743 232222333333 56676665 322 110123334444444
Q ss_pred C-----CCcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 107 S-----GHDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 107 ~-----GGNlLv~~~~~~~~~lr~ll~elGI 132 (433)
+ .-.++++++....+.... +-+.|+
T Consensus 75 ~~~~~~~~~ii~ls~~~~~~~~~~-~~~~g~ 104 (140)
T 3lua_A 75 NNSRTANTPVIIATKSDNPGYRHA-ALKFKV 104 (140)
T ss_dssp HSGGGTTCCEEEEESCCCHHHHHH-HHHSCC
T ss_pred hCcccCCCCEEEEeCCCCHHHHHH-HHHcCC
Confidence 3 445666666555444433 335563
No 108
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=27.59 E-value=43 Score=24.52 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecC
Q 013932 96 IDVASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFDE 136 (433)
Q Consensus 96 ls~~~L~~Fid~GGNlLv~~~~~~~~~lr~ll~elGI~~~p 136 (433)
++.++|++||.+-|-++ .++.+++.|||+-++
T Consensus 10 ~~e~~lL~yIr~sGGil---------dI~~~a~kygV~kde 41 (59)
T 2xvc_A 10 ITERELLDYIVNNGGFL---------DIEHFSKVYGVEKQE 41 (59)
T ss_dssp CCHHHHHHHHHHTTSEE---------EHHHHHHHHCCCHHH
T ss_pred ccHHHHHHHHHHcCCEE---------eHHHHHHHhCCCHHH
Confidence 78899999999877777 367788888876543
No 109
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=27.57 E-value=68 Score=25.33 Aligned_cols=69 Identities=20% Similarity=0.261 Sum_probs=35.9
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~ 107 (433)
..|+||+=|+...+. .+...|++.||++... .+..-.+..-....+|.+|+ +.... ..+--.+.+.+.+
T Consensus 6 ~~~iLivdd~~~~~~---~l~~~l~~~g~~v~~~--~~~~~a~~~l~~~~~dlvi~-d~~l~----~~~g~~~~~~l~~ 74 (140)
T 3grc_A 6 RPRILICEDDPDIAR---LLNLMLEKGGFDSDMV--HSAAQALEQVARRPYAAMTV-DLNLP----DQDGVSLIRALRR 74 (140)
T ss_dssp CSEEEEECSCHHHHH---HHHHHHHHTTCEEEEE--CSHHHHHHHHHHSCCSEEEE-CSCCS----SSCHHHHHHHHHT
T ss_pred CCCEEEEcCCHHHHH---HHHHHHHHCCCeEEEE--CCHHHHHHHHHhCCCCEEEE-eCCCC----CCCHHHHHHHHHh
Confidence 356666655554443 4566677789998653 22221222223344675555 44322 2455566666664
No 110
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=27.54 E-value=2.1e+02 Score=30.14 Aligned_cols=109 Identities=10% Similarity=0.085 Sum_probs=65.7
Q ss_pred CCCeEEEEEcCc-cc-ccchhhHHHHhhcCCcEEEEecCCCCCcc-cccccccccCEEEEeCCCC-CcCCCCCCHHHHHH
Q 013932 28 TDRRVLVLVDDF-AI-KSSHSLYFGSLTSRGFQLEFKLADDPNIG-LQRYGQYLYDALVLFCPSV-ERFGGSIDVASIVD 103 (433)
Q Consensus 28 ~~~r~LVl~d~~-~~-~~~~S~F~~~L~~rGf~v~~~~~~d~~~~-L~~~ge~~yd~LII~~p~~-~~~~~~ls~~~L~~ 103 (433)
.+++++|+|... +. +.-=....+.|+++|++++...+++.+.+ +.......|+.+|+..|+. ..-.+ -+.+.+.+
T Consensus 17 ~~~~i~I~YgS~tGnte~~A~~la~~l~~~g~~~~v~~~~~~~~~~l~~~~~~~~~~vi~~~sT~G~G~~p-d~~~~F~~ 95 (618)
T 3qe2_A 17 TGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPT-DNAQDFYD 95 (618)
T ss_dssp HTCSEEEEEECSSSHHHHHHHHHHHHGGGGTCCEEEECGGGSCGGGGGGGGGSTTCEEEEEEECBGGGBCC-GGGHHHHH
T ss_pred cCCeEEEEEECChhHHHHHHHHHHHHHHhCCCceEEechHHcCHHHhhhcccccCcEEEEEcCccCCCCCC-HHHHHHHH
Confidence 357899999775 22 22223466778889999887655544332 3222222578888887766 31111 24577888
Q ss_pred HHHC------CCcEEEEe--CCCC------cHHHHHHHHHcCceecCC
Q 013932 104 FVDS------GHDLIVAA--DSNA------SDLIREVATECGVDFDED 137 (433)
Q Consensus 104 Fid~------GGNlLv~~--~~~~------~~~lr~ll~elGI~~~p~ 137 (433)
++.+ |-..-|.+ +..- .+.+...++++|-..--.
T Consensus 96 ~L~~~~~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~ 143 (618)
T 3qe2_A 96 WLQETDVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFE 143 (618)
T ss_dssp HHHHCCCCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSC
T ss_pred HHhhccccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeec
Confidence 8875 33333444 2222 467788899999887643
No 111
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=27.49 E-value=1.7e+02 Score=23.43 Aligned_cols=91 Identities=9% Similarity=0.055 Sum_probs=44.2
Q ss_pred CCCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC
Q 013932 28 TDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (433)
Q Consensus 28 ~~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~ 107 (433)
...|+||+=|+...+. .+...|+..||++... .+..-.+..-....+|.+|+ +..... .+.-.+.+.+.+
T Consensus 6 ~~~~iLivdd~~~~~~---~l~~~L~~~g~~v~~~--~~~~~a~~~l~~~~~dlvi~-d~~l~~----~~g~~~~~~l~~ 75 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILN---SLKRLIKRLGCNIITF--TSPLDALEALKGTSVQLVIS-DMRMPE----MGGEVFLEQVAK 75 (154)
T ss_dssp SCCEEEEECSCHHHHH---HHHHHHHTTTCEEEEE--SCHHHHHHHHTTSCCSEEEE-ESSCSS----SCHHHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHH---HHHHHHHHcCCeEEEe--CCHHHHHHHHhcCCCCEEEE-ecCCCC----CCHHHHHHHHHH
Confidence 4557776656554443 4566677789998743 22221222222334676666 332221 233333444432
Q ss_pred ---CCcEEEEeCCCCcHHHHHHHH
Q 013932 108 ---GHDLIVAADSNASDLIREVAT 128 (433)
Q Consensus 108 ---GGNlLv~~~~~~~~~lr~ll~ 128 (433)
.-.++++++....+.....++
T Consensus 76 ~~~~~~ii~ls~~~~~~~~~~~~~ 99 (154)
T 2rjn_A 76 SYPDIERVVISGYADAQATIDAVN 99 (154)
T ss_dssp HCTTSEEEEEECGGGHHHHHHHHH
T ss_pred hCCCCcEEEEecCCCHHHHHHHHh
Confidence 334665555544444444433
No 112
>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.00 E-value=87 Score=24.84 Aligned_cols=46 Identities=13% Similarity=0.340 Sum_probs=31.8
Q ss_pred CCeEEEEEEeC-ceEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013932 333 DDVQVQFYMMS-PYVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 379 (433)
Q Consensus 333 ~diQlEf~mld-Py~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 379 (433)
.|+..+.++-+ .-.+..++..++|+|.++|+ |..-|.|+..|.|.-
T Consensus 30 ~~ltv~V~~PsG~~~~~~v~d~~dGtY~v~yt-P~e~G~h~v~V~~~G 76 (95)
T 2ee9_A 30 GEITGEVHMPSGKTATPEIVDNKDGTVTVRYA-PTEVGLHEMHIKYMG 76 (95)
T ss_dssp TSEEEEEECTTSCEECCEEEECSSSCEEEECC-CCSSEEEEEEEEESS
T ss_pred CCEEEEEECCCCCccccEEEeCCCCeEEEEEE-ecCCEeEEEEEEECC
Confidence 56666555544 12333444467899999995 888999999999874
No 113
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=26.76 E-value=3.3e+02 Score=23.93 Aligned_cols=103 Identities=12% Similarity=0.139 Sum_probs=60.3
Q ss_pred CeEEEEEcCccc---ccchhhHHHHhhcCCcEEEEecCCCCCcccc---------------cccccccCEEEEeCCCCCc
Q 013932 30 RRVLVLVDDFAI---KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQ---------------RYGQYLYDALVLFCPSVER 91 (433)
Q Consensus 30 ~r~LVl~d~~~~---~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~---------------~~ge~~yd~LII~~p~~~~ 91 (433)
++++|+.-+... .....++...+-..|.+++.....| +.++ ..-....|.+||..|.-.
T Consensus 3 k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~d--LP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeYn- 79 (190)
T 3u7r_A 3 KTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIGD--LPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEYN- 79 (190)
T ss_dssp EEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGGG--SCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCBT-
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEeccc--CCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhhc-
Confidence 355666644321 1222345556666788888754332 2222 112334699999999654
Q ss_pred CCCCCCH--HHHHHHHHC--------CCcEE-EEeCCCC------cHHHHHHHHHcCceecCC
Q 013932 92 FGGSIDV--ASIVDFVDS--------GHDLI-VAADSNA------SDLIREVATECGVDFDED 137 (433)
Q Consensus 92 ~~~~ls~--~~L~~Fid~--------GGNlL-v~~~~~~------~~~lr~ll~elGI~~~p~ 137 (433)
++++. |.++|++.+ |--++ +.++++. ...+|.++..+|....+.
T Consensus 80 --~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~~a~~~Lr~vl~~lg~~v~~~ 140 (190)
T 3u7r_A 80 --RSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAALAQARLKNDLLHVGTVMMSM 140 (190)
T ss_dssp --TBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTHHHHHHHHHHHHTTTCEECCC
T ss_pred --ccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHHHHHHHHHHHHHHcCCEEccC
Confidence 54555 777777742 23344 4344432 467999999999988875
No 114
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=26.56 E-value=1.5e+02 Score=26.47 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=51.3
Q ss_pred CeEEEEEcCcccccchhhHHHHhhcC-CcEEEEecCCCC-----Ccccc-----cccccccCEEEEeCCCCCcCCCCCCH
Q 013932 30 RRVLVLVDDFAIKSSHSLYFGSLTSR-GFQLEFKLADDP-----NIGLQ-----RYGQYLYDALVLFCPSVERFGGSIDV 98 (433)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~F~~~L~~r-Gf~v~~~~~~d~-----~~~L~-----~~ge~~yd~LII~~p~~~~~~~~ls~ 98 (433)
+|+++++-+.-+..+.....+.|..+ ||++++..++.. .+.+. ..-...||.|||-....... .++
T Consensus 4 ~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~~~~~D~livpGG~~~~~---~~~ 80 (206)
T 3f5d_A 4 KKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIGGDSWSN---DNK 80 (206)
T ss_dssp EEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECCBSCCCC---CCH
T ss_pred cEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhCCcCCCEEEEcCCCChhh---cCH
Confidence 47777775544445566778888887 999998776643 11111 11123689998854432211 122
Q ss_pred ---HHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 99 ---ASIVDFVDSGHDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 99 ---~~L~~Fid~GGNlLv~~~~~~~~~lr~ll~elGI 132 (433)
+-|.++.++|.-|. +.-.+ - .+|.+.|+
T Consensus 81 ~l~~~l~~~~~~gk~ia-aiC~G----~-~~La~aGL 111 (206)
T 3f5d_A 81 KLLHFVKTAFQKNIPIA-AICGA----V-DFLAKNGL 111 (206)
T ss_dssp HHHHHHHHHHHTTCCEE-EETHH----H-HHHHHTTT
T ss_pred HHHHHHHHHHHcCCEEE-EECHH----H-HHHHHcCC
Confidence 44555555665444 32221 1 35667774
No 115
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=26.32 E-value=1.4e+02 Score=23.85 Aligned_cols=63 Identities=13% Similarity=0.212 Sum_probs=37.5
Q ss_pred EeCCceEEEEEEEEEeCCeeeeccCCCeEEEEEEeC-ceEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 013932 308 RINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMS-PYVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 379 (433)
Q Consensus 308 ~i~d~v~y~i~i~e~~~~~W~P~~~~diQlEf~mld-Py~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 379 (433)
+++...+|+|+-..- -.++++++..-=+ .-+...++..++|+|.++|+. ..-|.|+..|.|.-
T Consensus 25 ~~g~~~~F~V~~~da--------G~~~l~v~i~~~~g~~~~~~v~d~~dGty~v~Y~p-~~~G~y~i~V~~~g 88 (113)
T 2dia_A 25 KVGEAGLLSVDCSEA--------GPGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVP-LTAGMYTLTMKYGG 88 (113)
T ss_dssp ETTCCCCEEEEESSC--------CSCCEEEEEEETTTEECEEEEEECTTSEEEEEEEC-SSCEEEEEEEEETT
T ss_pred ecCCCEEEEEEECCC--------CCccEEEEEECCCCCEeeEEEEECCCCEEEEEEEe-CCCccEEEEEEECC
Confidence 445555566655421 1144544443211 123344455678999999975 56799999999864
No 116
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=25.82 E-value=2.6e+02 Score=25.85 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=24.8
Q ss_pred CeEEEEEcCccc----ccchhhHHHHhhcCCcEEEEecCCCC
Q 013932 30 RRVLVLVDDFAI----KSSHSLYFGSLTSRGFQLEFKLADDP 67 (433)
Q Consensus 30 ~r~LVl~d~~~~----~~~~S~F~~~L~~rGf~v~~~~~~d~ 67 (433)
.|+|||+-+... +..-..+.+.|++.|++|+.....+.
T Consensus 3 mkiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~~ 44 (273)
T 1d4a_A 3 RRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAM 44 (273)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTT
T ss_pred CEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEcccc
Confidence 378888865432 22233577778889999998654443
No 117
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=25.81 E-value=1.2e+02 Score=24.63 Aligned_cols=92 Identities=16% Similarity=0.152 Sum_probs=43.6
Q ss_pred eEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCC--cccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH--
Q 013932 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPN--IGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD-- 106 (433)
Q Consensus 31 r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~--~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid-- 106 (433)
|+||+=|+...+. .+.+.|++.||++... ..+.. +.+.....+.+|.+|+ +..... .+--.+.+.+.
T Consensus 38 ~Ilivdd~~~~~~---~l~~~L~~~g~~v~~~-~~~~~~al~~l~~~~~~~dliil-D~~l~~----~~g~~~~~~lr~~ 108 (157)
T 3hzh_A 38 NVLIVDDSVFTVK---QLTQIFTSEGFNIIDT-AADGEEAVIKYKNHYPNIDIVTL-XITMPK----MDGITCLSNIMEF 108 (157)
T ss_dssp EEEEECSCHHHHH---HHHHHHHHTTCEEEEE-ESSHHHHHHHHHHHGGGCCEEEE-CSSCSS----SCHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHH---HHHHHHHhCCCeEEEE-ECCHHHHHHHHHhcCCCCCEEEE-eccCCC----ccHHHHHHHHHhh
Confidence 5555555544443 4566677789998522 12211 2222222225675555 443221 33333333333
Q ss_pred -CCCcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 107 -SGHDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 107 -~GGNlLv~~~~~~~~~lr~ll~elGI 132 (433)
..-.++++++....+.+. -+.+.|+
T Consensus 109 ~~~~~ii~ls~~~~~~~~~-~~~~~g~ 134 (157)
T 3hzh_A 109 DKNARVIMISALGKEQLVK-DCLIKGA 134 (157)
T ss_dssp CTTCCEEEEESCCCHHHHH-HHHHTTC
T ss_pred CCCCcEEEEeccCcHHHHH-HHHHcCC
Confidence 234566666655544443 3445564
No 118
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=24.91 E-value=2.1e+02 Score=21.95 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=44.8
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCC
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG 108 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~G 108 (433)
+.|+|++=|+...+. .+.+.|++.||++... .+..-.+..-....+|.+|+ +.... ..+.-.+.+.+.+.
T Consensus 6 ~~~ilivdd~~~~~~---~l~~~L~~~g~~v~~~--~~~~~a~~~l~~~~~dlii~-d~~l~----~~~g~~~~~~l~~~ 75 (132)
T 3lte_A 6 SKRILVVDDDQAMAA---AIERVLKRDHWQVEIA--HNGFDAGIKLSTFEPAIMTL-DLSMP----KLDGLDVIRSLRQN 75 (132)
T ss_dssp -CEEEEECSCHHHHH---HHHHHHHHTTCEEEEE--SSHHHHHHHHHHTCCSEEEE-ESCBT----TBCHHHHHHHHHTT
T ss_pred CccEEEEECCHHHHH---HHHHHHHHCCcEEEEe--CCHHHHHHHHHhcCCCEEEE-ecCCC----CCCHHHHHHHHHhc
Confidence 456666655554444 4555667789998753 22221222223345675554 44322 13555566666543
Q ss_pred C----cEEEEeCCCCcHHHHHHHHHcCc
Q 013932 109 H----DLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 109 G----NlLv~~~~~~~~~lr~ll~elGI 132 (433)
+ -.+++.+....+.+.. +.+.|+
T Consensus 76 ~~~~~~~ii~~~~~~~~~~~~-~~~~g~ 102 (132)
T 3lte_A 76 KVANQPKILVVSGLDKAKLQQ-AVTEGA 102 (132)
T ss_dssp TCSSCCEEEEECCSCSHHHHH-HHHHTC
T ss_pred CccCCCeEEEEeCCChHHHHH-HHHhCh
Confidence 2 2334444433443333 344554
No 119
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=24.57 E-value=1.8e+02 Score=23.23 Aligned_cols=93 Identities=12% Similarity=0.128 Sum_probs=44.4
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH--
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD-- 106 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid-- 106 (433)
+.|+||+=|+...+. .+...|+..||++... .+..-.+..-....+|.+|+ +..... .+.-.+.+.+.
T Consensus 3 ~~~ILivdd~~~~~~---~l~~~L~~~g~~v~~~--~~~~~a~~~l~~~~~dliil-d~~l~~----~~g~~~~~~l~~~ 72 (155)
T 1qkk_A 3 APSVFLIDDDRDLRK---AMQQTLELAGFTVSSF--ASATEALAGLSADFAGIVIS-DIRMPG----MDGLALFRKILAL 72 (155)
T ss_dssp -CEEEEECSCHHHHH---HHHHHHHHTTCEEEEE--SCHHHHHHTCCTTCCSEEEE-ESCCSS----SCHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHH---HHHHHHHHcCcEEEEE--CCHHHHHHHHHhCCCCEEEE-eCCCCC----CCHHHHHHHHHhh
Confidence 356666656544443 4566677789998743 22221222222344676555 332221 23333333332
Q ss_pred -CCCcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 107 -SGHDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 107 -~GGNlLv~~~~~~~~~lr~ll~elGI 132 (433)
..--++++++....+.... +-+.|+
T Consensus 73 ~~~~pii~ls~~~~~~~~~~-~~~~g~ 98 (155)
T 1qkk_A 73 DPDLPMILVTGHGDIPMAVQ-AIQDGA 98 (155)
T ss_dssp CTTSCEEEEECGGGHHHHHH-HHHTTC
T ss_pred CCCCCEEEEECCCChHHHHH-HHhcCC
Confidence 2445666665544433333 334553
No 120
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=24.01 E-value=1.2e+02 Score=28.66 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=28.5
Q ss_pred CCeEEEEEcCcc--------------cccchhhHHHHhhcCCcEEEEecCCCC
Q 013932 29 DRRVLVLVDDFA--------------IKSSHSLYFGSLTSRGFQLEFKLADDP 67 (433)
Q Consensus 29 ~~r~LVl~d~~~--------------~~~~~S~F~~~L~~rGf~v~~~~~~d~ 67 (433)
++|+|+|+-+.. .........+-|+..||++++..++..
T Consensus 48 ~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~ag~~v~i~S~~g~ 100 (291)
T 1n57_A 48 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGL 100 (291)
T ss_dssp SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred CCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 468999986631 224556678889999999999876643
No 121
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=23.75 E-value=2.2e+02 Score=22.66 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=43.9
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHH--
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD-- 106 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid-- 106 (433)
..|+||+=|+...+ ..+...|++.||++... .+..-.+.......+|.+|+ +..... .+--.+.+.+.
T Consensus 14 ~~~ILivdd~~~~~---~~l~~~L~~~g~~v~~~--~~~~~a~~~l~~~~~dlvi~-D~~l~~----~~g~~~~~~l~~~ 83 (153)
T 3hv2_A 14 RPEILLVDSQEVIL---QRLQQLLSPLPYTLHFA--RDATQALQLLASREVDLVIS-AAHLPQ----MDGPTLLARIHQQ 83 (153)
T ss_dssp CCEEEEECSCHHHH---HHHHHHHTTSSCEEEEE--SSHHHHHHHHHHSCCSEEEE-ESCCSS----SCHHHHHHHHHHH
T ss_pred CceEEEECCCHHHH---HHHHHHhcccCcEEEEE--CCHHHHHHHHHcCCCCEEEE-eCCCCc----CcHHHHHHHHHhH
Confidence 45666555554433 35667778889998753 22221222223345676665 332221 23333333332
Q ss_pred -CCCcEEEEeCCCCcHHHHHHHHHcC
Q 013932 107 -SGHDLIVAADSNASDLIREVATECG 131 (433)
Q Consensus 107 -~GGNlLv~~~~~~~~~lr~ll~elG 131 (433)
..-.++++++....+.... +-+.|
T Consensus 84 ~~~~~ii~~s~~~~~~~~~~-~~~~g 108 (153)
T 3hv2_A 84 YPSTTRILLTGDPDLKLIAK-AINEG 108 (153)
T ss_dssp CTTSEEEEECCCCCHHHHHH-HHHTT
T ss_pred CCCCeEEEEECCCCHHHHHH-HHhCC
Confidence 2334555555554444433 33444
No 122
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=23.31 E-value=1.4e+02 Score=23.43 Aligned_cols=94 Identities=7% Similarity=-0.029 Sum_probs=44.3
Q ss_pred CeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC--
Q 013932 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS-- 107 (433)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~-- 107 (433)
.|+||+=|+...+. .+...|++.||++... .+..-.+..-....+|.+|+ +..... +..+--.+.+.+.+
T Consensus 7 ~~ilivdd~~~~~~---~l~~~L~~~g~~v~~~--~~~~~a~~~l~~~~~dlvi~-D~~l~~--~~~~g~~~~~~l~~~~ 78 (136)
T 3kto_A 7 PIIYLVDHQKDARA---ALSKLLSPLDVTIQCF--ASAESFMRQQISDDAIGMII-EAHLED--KKDSGIELLETLVKRG 78 (136)
T ss_dssp CEEEEECSCHHHHH---HHHHHHTTSSSEEEEE--SSHHHHTTSCCCTTEEEEEE-ETTGGG--BTTHHHHHHHHHHHTT
T ss_pred CeEEEEcCCHHHHH---HHHHHHHHCCcEEEEe--CCHHHHHHHHhccCCCEEEE-eCcCCC--CCccHHHHHHHHHhCC
Confidence 46666655554443 4556677789998743 22221233333344665554 443221 00233333333432
Q ss_pred -CCcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 108 -GHDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 108 -GGNlLv~~~~~~~~~lr~ll~elGI 132 (433)
.-.++++++....+.... +-+.|+
T Consensus 79 ~~~~ii~~s~~~~~~~~~~-~~~~ga 103 (136)
T 3kto_A 79 FHLPTIVMASSSDIPTAVR-AMRASA 103 (136)
T ss_dssp CCCCEEEEESSCCHHHHHH-HHHTTC
T ss_pred CCCCEEEEEcCCCHHHHHH-HHHcCh
Confidence 335666666555443333 335553
No 123
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=23.20 E-value=1.1e+02 Score=26.99 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=34.2
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcC------CcEEEEecCCCCCc-----------ccccccccccCEEEEeCCC
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSR------GFQLEFKLADDPNI-----------GLQRYGQYLYDALVLFCPS 88 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~r------Gf~v~~~~~~d~~~-----------~L~~~ge~~yd~LII~~p~ 88 (433)
..|+.||+-+.-...+.....+-|+.. +|++++..++...+ .+..-....||.|||-...
T Consensus 5 ~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG~ 81 (202)
T 3gra_A 5 PYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGGL 81 (202)
T ss_dssp CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECCT
T ss_pred cEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCCC
Confidence 467777775544444444445555433 49999876664321 1112124678999996543
No 124
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=23.00 E-value=55 Score=33.50 Aligned_cols=63 Identities=11% Similarity=0.219 Sum_probs=50.4
Q ss_pred HHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecCCCCeEEEeccCccccCCCCCceEEeeccc
Q 013932 102 VDFVDSGHDLIVAADSNASDLIREVATECGVDFDEDPAAMVIDHINYAVSNFDGDHTLIASDDF 165 (433)
Q Consensus 102 ~~Fid~GGNlLv~~~~~~~~~lr~ll~elGI~~~p~~~~~VvDhf~~~~~~~~~~~~~i~~~~~ 165 (433)
.-|+.+|++|+++-+....+.+-.+.-..+|+-+|. ..+.++.-=|..+.+..+.+++++.|+
T Consensus 281 ~~~i~kga~Iv~vhdv~~~~~~p~~~~r~niytdp~-kP~~v~~g~y~ig~p~~~spv~~t~nf 343 (446)
T 4djd_C 281 VNYVTKYASLVVLRTDAKEHLLPLLSWRQNLYTDPQ-VPIRVEEKLNEIGAVNENSPVYVTTNF 343 (446)
T ss_dssp HHHHHTTCSEEEESCCCHHHHHHHHHHHHHHTSCSS-SCCBCCSSCEECSCCCSSCCEEEECSB
T ss_pred HHHHHcCCeEEEEcCCcHHHhhhHHHHHhhccCCCC-CCeecCCCceeCCCCCCCCCEEEEeee
Confidence 678999999999988888888888888899999998 566778776765555555577777764
No 125
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=22.65 E-value=1.1e+02 Score=25.22 Aligned_cols=29 Identities=14% Similarity=0.383 Sum_probs=23.4
Q ss_pred cccCCCceEEEEEecCCceeeeEEEEeeee
Q 013932 350 LSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 379 (433)
Q Consensus 350 l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 379 (433)
++..++|+|.+.|+.+. -|-|+..|.|.-
T Consensus 61 v~d~~dGty~V~Y~p~~-~G~y~I~V~~~g 89 (124)
T 2dmb_A 61 VIENEDGTYDIFYTAAK-PGTYVIYVRFGG 89 (124)
T ss_dssp EEECTTSCEEEEEECSS-CEEEEEEEEESS
T ss_pred EEeCCCCEEEEEEEcCC-CEEEEEEEEECC
Confidence 33357899999999775 599999999964
No 126
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=21.93 E-value=1.8e+02 Score=33.44 Aligned_cols=71 Identities=17% Similarity=0.360 Sum_probs=51.0
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeeccCC-CeEEEEEEeCceE----eeccccCCCceEEEEEecCCc--eeeeEEEE
Q 013932 303 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSD-DVQVQFYMMSPYV----LKTLSTDQKGHYSAEFKVPDV--YGVFQFKV 375 (433)
Q Consensus 303 ~~~~Y~i~d~v~y~i~i~e~~~~~W~P~~~~-diQlEf~mldPy~----R~~l~~~~~~~y~~~f~~PD~--hGvf~f~v 375 (433)
+...||=.|.|.|.+-+-. .+..|-... .+.+|+ .||-- |..+.....|.++.+|+||+. -|.|+.++
T Consensus 107 Dr~iYrPGqtV~~r~~~~~---~~~~p~~~~~~v~v~l--~dp~g~~i~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~I~~ 181 (1325)
T 2pn5_A 107 DKPVFKPGDTVNFRVIVLD---TELKPPARVKSVYVTI--RDPQRNVIRKWSTAKLYAGVFESDLQIAPTPMLGVWNISV 181 (1325)
T ss_dssp SCSEECTTCEEEEEEEEEE---TTSSCCSSCCEEEEEE--ECTTCCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEE
T ss_pred CCCccCCCCEEEEEEEEec---CCccccccCccEEEEE--ECCCCCEEEEEecccCCCCeEecceECCCCccccceEEEE
Confidence 4557999999999987654 335676532 355554 59853 333333568999999999997 79999999
Q ss_pred eee
Q 013932 376 EYQ 378 (433)
Q Consensus 376 ~Y~ 378 (433)
.+.
T Consensus 182 ~~~ 184 (1325)
T 2pn5_A 182 EVE 184 (1325)
T ss_dssp EET
T ss_pred EeC
Confidence 885
No 127
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=21.92 E-value=1.2e+02 Score=28.81 Aligned_cols=35 Identities=11% Similarity=0.234 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCcccc----cchhhHHHHhhcCCcEEEEe
Q 013932 28 TDRRVLVLVDDFAIK----SSHSLYFGSLTSRGFQLEFK 62 (433)
Q Consensus 28 ~~~r~LVl~d~~~~~----~~~S~F~~~L~~rGf~v~~~ 62 (433)
+.-|+|||+-.+..+ ..-..|.+.|+++|++|+..
T Consensus 21 ~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~ 59 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVS 59 (280)
T ss_dssp -CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEE
Confidence 467999999655322 22346889999999999986
No 128
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=21.89 E-value=2e+02 Score=23.72 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHCCCcEEEEeCC-----CCcHHHHHHHHHcCceecC
Q 013932 95 SIDVASIVDFVDSGHDLIVAADS-----NASDLIREVATECGVDFDE 136 (433)
Q Consensus 95 ~ls~~~L~~Fid~GGNlLv~~~~-----~~~~~lr~ll~elGI~~~p 136 (433)
+++.+.|..+++.+=.++|.+.. ..++.++..+++.||.++.
T Consensus 48 ~l~~~~l~~ll~~~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~ 94 (122)
T 2ab1_A 48 GVQPADVKEVVEKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRV 94 (122)
T ss_dssp CCCHHHHHHHHTTCCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEE
T ss_pred HCCHHHHHHHhhCCCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEE
Confidence 48889999999999899977631 2468899999999987765
No 129
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=21.85 E-value=1.1e+02 Score=29.93 Aligned_cols=62 Identities=18% Similarity=0.404 Sum_probs=45.4
Q ss_pred eEeCCceEEEEEEEEEeCCeeeeccCCCeEEEEEEeCce---Eeeccc--cCCCceEEEEEecCCceeeeEEEEeeee
Q 013932 307 YRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY---VLKTLS--TDQKGHYSAEFKVPDVYGVFQFKVEYQR 379 (433)
Q Consensus 307 Y~i~d~v~y~i~i~e~~~~~W~P~~~~diQlEf~mldPy---~R~~l~--~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 379 (433)
=+++...+|+|+-.+ |..=+|+....+|- ....++ ..++|+|.++| .|..-|.|+..|.|..
T Consensus 269 ~~vg~p~~F~Vdt~~----------AG~g~l~v~V~~P~G~~~~~~v~~~~~~~gty~v~y-~P~~~G~~~I~V~~~g 335 (347)
T 4b7l_A 269 NMVKQPAKFTVDTIS----------AGQGDVMVFVEDPEGNKEEAQVTPDSDKNKTYSVEY-LPKVTGLHKVTVLFAG 335 (347)
T ss_dssp CCTTSCEEEEEECTT----------TCSCCEEEEEECTTSCEEECEEEESSTTCSEEEEEE-CCCSSSEEEEEEEETT
T ss_pred ceeCCEEEEEEEeCC----------CCCCceEEEEECCCCCeecCEEEEEcCCCCEEEEEE-EECCCEeEEEEEEECC
Confidence 467888888887653 33345777778883 333333 45689999999 6999999999999864
No 130
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*
Probab=21.75 E-value=2.6e+02 Score=28.98 Aligned_cols=70 Identities=16% Similarity=0.355 Sum_probs=51.2
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeeccCCCeEEEEEEeCce----EeeccccCCCceEEEEEecCCc--eeeeEEEEe
Q 013932 303 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY----VLKTLSTDQKGHYSAEFKVPDV--YGVFQFKVE 376 (433)
Q Consensus 303 ~~~~Y~i~d~v~y~i~i~e~~~~~W~P~~~~diQlEf~mldPy----~R~~l~~~~~~~y~~~f~~PD~--hGvf~f~v~ 376 (433)
+...||=.|.|.|.+-+- +.++.|.. +-+ .+...||- .|..++ ...|.|+.+|+||+. -|.|+.++.
T Consensus 127 Dr~iYrPGqtV~~r~i~~---d~~~~p~~-~~~--~v~i~dp~g~~v~~~~~~-~~~G~~~~~f~Lp~~~~~G~w~i~v~ 199 (656)
T 4fxk_A 127 DQPIYNPGQRVRYRVFAL---DQKMRPST-DTI--TVMVENSHGLRVRKKEVY-MPSSIFQDDFVIPDISEPGTWKISAR 199 (656)
T ss_dssp SCSEECTTCEEEEEEEEE---CSSSSBCC-CCE--EEEEECTTCCEEEEEEEC-CTTSEEEEEEECCTTCCSEEEEEEEE
T ss_pred CCCCcCCCCEEEEEEEEE---CCccCcCc-ccc--eEEEECCCCcEEeeeEEe-cCCceEEEEecCCCCCCCcCEEEEEE
Confidence 455899999999988653 46678864 344 55567983 233443 457999999999975 699999998
Q ss_pred eee
Q 013932 377 YQR 379 (433)
Q Consensus 377 Y~R 379 (433)
+..
T Consensus 200 ~~~ 202 (656)
T 4fxk_A 200 FSD 202 (656)
T ss_dssp ESS
T ss_pred EcC
Confidence 854
No 131
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=21.61 E-value=1.3e+02 Score=23.04 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=44.5
Q ss_pred CeEEEEEcCcccccchhhHHHHhhcCCcEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHCC-
Q 013932 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG- 108 (433)
Q Consensus 30 ~r~LVl~d~~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~G- 108 (433)
.|+|++=|+...+. .+...|+..||++... .+..-.+..-....+|.+|+ +.... + .+--.+.+.+.+.
T Consensus 3 ~~ilivdd~~~~~~---~l~~~L~~~g~~v~~~--~~~~~al~~~~~~~~dlii~-D~~~p---~-~~g~~~~~~lr~~~ 72 (120)
T 3f6p_A 3 KKILVVDDEKPIAD---ILEFNLRKEGYEVHCA--HDGNEAVEMVEELQPDLILL-DIMLP---N-KDGVEVCREVRKKY 72 (120)
T ss_dssp CEEEEECSCHHHHH---HHHHHHHHTTCEEEEE--SSHHHHHHHHHTTCCSEEEE-ETTST---T-THHHHHHHHHHTTC
T ss_pred CeEEEEECCHHHHH---HHHHHHHhCCEEEEEe--CCHHHHHHHHhhCCCCEEEE-eCCCC---C-CCHHHHHHHHHhcC
Confidence 46666656554444 3556677789998753 23221233223345676555 43222 1 2334444445443
Q ss_pred -CcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 109 -HDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 109 -GNlLv~~~~~~~~~lr~ll~elGI 132 (433)
--++++++....+.. .-+-+.|.
T Consensus 73 ~~~ii~~t~~~~~~~~-~~~~~~ga 96 (120)
T 3f6p_A 73 DMPIIMLTAKDSEIDK-VIGLEIGA 96 (120)
T ss_dssp CSCEEEEEESSCHHHH-HHHHHTTC
T ss_pred CCCEEEEECCCChHHH-HHHHhCCc
Confidence 345555554443322 33445554
No 132
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=21.61 E-value=2.3e+02 Score=27.09 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=54.9
Q ss_pred ccchhhHHHHhh-cCCcEEEEecCCCCCcc-cccc--cccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC----------
Q 013932 42 KSSHSLYFGSLT-SRGFQLEFKLADDPNIG-LQRY--GQYLYDALVLFCPSVERFGGSIDVASIVDFVDS---------- 107 (433)
Q Consensus 42 ~~~~S~F~~~L~-~rGf~v~~~~~~d~~~~-L~~~--ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~---------- 107 (433)
...+..|.+.|+ +.|.+|....|.+...+ ++.. .--..+.+||.++... ....+...+.+++++
T Consensus 67 ~~q~~~l~~~Lr~~~Gv~V~~l~~~~~~Pd~vF~rD~~~vi~~~vii~~m~~~--~Rr~E~~~~~~~l~~~g~~i~~~~~ 144 (308)
T 3i4a_A 67 ERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVAVVCEETALITRPGAP--SRRKEVDMMKEALEKLQLNIVEMKD 144 (308)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECCCTTCTTTTCGGGGEEEETTEEEECCCSSG--GGGGGHHHHHHHHHTTTCEEEECCC
T ss_pred HHHHHHHHHHHhhcCCCEEEEcCCCCCCCCeEeecCeEEEECCEEEEeCCCch--hhhhhHHHHHHHHHHCCCeEEEccC
Confidence 468889999999 99999998766554333 3422 2333477777777443 123455555555543
Q ss_pred ------CCcEEEEeC--------CCCcHHHHHHHHHc
Q 013932 108 ------GHDLIVAAD--------SNASDLIREVATEC 130 (433)
Q Consensus 108 ------GGNlLv~~~--------~~~~~~lr~ll~el 130 (433)
||++|+... -+..+.++.|++.+
T Consensus 145 ~~~~lEGGDvl~~g~~v~vG~s~RTn~~gi~~l~~~l 181 (308)
T 3i4a_A 145 ENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTF 181 (308)
T ss_dssp TTCCCCGGGEEECSSCEEEEESSSCCHHHHHHHHHHT
T ss_pred CCCcCccceEEEECCEEEEEEchhcCHHHHHHHHHHc
Confidence 577775432 12357888888887
No 133
>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A*
Probab=21.52 E-value=58 Score=33.28 Aligned_cols=65 Identities=12% Similarity=0.244 Sum_probs=47.7
Q ss_pred HHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecCCCCeEEEeccCccccCCCCCceEEeeccc
Q 013932 100 SIVDFVDSGHDLIVAADSNASDLIREVATECGVDFDEDPAAMVIDHINYAVSNFDGDHTLIASDDF 165 (433)
Q Consensus 100 ~L~~Fid~GGNlLv~~~~~~~~~lr~ll~elGI~~~p~~~~~VvDhf~~~~~~~~~~~~~i~~~~~ 165 (433)
.-.-++.+|++|+++-+.....-+-.+....||+-+|+ ..+.++.-=|..+.+..+.+++++.|+
T Consensus 278 lA~~~~~~GasIl~~~~~~~~~rlp~~~lR~~i~tdp~-~~~~v~~~~y~~g~p~~~spv~~t~n~ 342 (445)
T 2h9a_A 278 EASVYIAKYAGIIVLNTVEPADILPLITLRLNIYTDPQ-KPIAVEPKVYEILNPGPDAPVFITTNF 342 (445)
T ss_dssp HHHHHHHTTCSEEEECCCCHHHHHHHHHHHHHHTSCTT-SCCBCCSSCEEESSCCTTSCEEEEESB
T ss_pred HHHHHHHcCCeEEEecCccHHHhccHHHHhcccCCCCC-CCcccCCCceeCCCCCCCCCEEEEeee
Confidence 33445999999999988777666777788889999998 555777666665555555567777764
No 134
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=21.39 E-value=1.8e+02 Score=22.88 Aligned_cols=93 Identities=11% Similarity=0.136 Sum_probs=44.1
Q ss_pred CCeEEEEEcCcccccchhhHHHHhhcCC-cEEEEecCCCCCcccccccc--cccCEEEEeCCCCCcCCCCCCHHHHHHHH
Q 013932 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRG-FQLEFKLADDPNIGLQRYGQ--YLYDALVLFCPSVERFGGSIDVASIVDFV 105 (433)
Q Consensus 29 ~~r~LVl~d~~~~~~~~S~F~~~L~~rG-f~v~~~~~~d~~~~L~~~ge--~~yd~LII~~p~~~~~~~~ls~~~L~~Fi 105 (433)
+.|+||+=|+...+. .+...|+..| |++... .+..-.+....+ ..+|.+|+ +.... + .+--.+.+.+
T Consensus 20 ~~~ilivdd~~~~~~---~l~~~L~~~g~~~v~~~--~~~~~~~~~~~~~~~~~dlvi~-D~~l~---~-~~g~~~~~~l 89 (146)
T 4dad_A 20 MINILVASEDASRLA---HLARLVGDAGRYRVTRT--VGRAAQIVQRTDGLDAFDILMI-DGAAL---D-TAELAAIEKL 89 (146)
T ss_dssp GCEEEEECSCHHHHH---HHHHHHHHHCSCEEEEE--CCCHHHHTTCHHHHTTCSEEEE-ECTTC---C-HHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHH---HHHHHHhhCCCeEEEEe--CCHHHHHHHHHhcCCCCCEEEE-eCCCC---C-ccHHHHHHHH
Confidence 456666555554444 3555666778 998763 222212222222 45676665 33221 1 2232333333
Q ss_pred H-C--CCcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 106 D-S--GHDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 106 d-~--GGNlLv~~~~~~~~~lr~ll~elGI 132 (433)
. . .-.++++++....+..... -+.|+
T Consensus 90 ~~~~~~~~ii~lt~~~~~~~~~~~-~~~ga 118 (146)
T 4dad_A 90 SRLHPGLTCLLVTTDASSQTLLDA-MRAGV 118 (146)
T ss_dssp HHHCTTCEEEEEESCCCHHHHHHH-HTTTE
T ss_pred HHhCCCCcEEEEeCCCCHHHHHHH-HHhCC
Confidence 2 2 3446666665554444333 34554
No 135
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=21.29 E-value=2.3e+02 Score=25.04 Aligned_cols=37 Identities=8% Similarity=-0.008 Sum_probs=23.9
Q ss_pred CeEEEEEcCcc-cccch-----hhHHHHhhcC--CcEEEEecCCC
Q 013932 30 RRVLVLVDDFA-IKSSH-----SLYFGSLTSR--GFQLEFKLADD 66 (433)
Q Consensus 30 ~r~LVl~d~~~-~~~~~-----S~F~~~L~~r--Gf~v~~~~~~d 66 (433)
.|+|+|.-+.. .+..+ ..|.+.|+++ |.+++.....+
T Consensus 5 ~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~ 49 (211)
T 3p0r_A 5 TKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYK 49 (211)
T ss_dssp CEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGG
T ss_pred CEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 37788876554 12222 3588888887 99999864433
No 136
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=21.23 E-value=49 Score=30.24 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=26.2
Q ss_pred CCeEEEEEcCcccc----cchhhHHHHhhcCCcEEEEecCCC
Q 013932 29 DRRVLVLVDDFAIK----SSHSLYFGSLTSRGFQLEFKLADD 66 (433)
Q Consensus 29 ~~r~LVl~d~~~~~----~~~S~F~~~L~~rGf~v~~~~~~d 66 (433)
+.|+|+|.-+.... ..-..+.+.|+++|++++.....+
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~ 42 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYA 42 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTT
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence 46889888654322 233358888998999999875444
No 137
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=20.53 E-value=3.2e+02 Score=21.58 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=42.8
Q ss_pred eEEEEEcCcccccchhhHHHHhhcCC--cEEEEecCCCCCcccccccccccCEEEEeCCCCCcCCCCCCHHHHHHHHHC-
Q 013932 31 RVLVLVDDFAIKSSHSLYFGSLTSRG--FQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS- 107 (433)
Q Consensus 31 r~LVl~d~~~~~~~~S~F~~~L~~rG--f~v~~~~~~d~~~~L~~~ge~~yd~LII~~p~~~~~~~~ls~~~L~~Fid~- 107 (433)
|+||+=|+...+. .+...|+..| +.+... .+..-.+..-....+|.+|+ +.... ..+.-.+.+.+.+
T Consensus 22 ~iLivdd~~~~~~---~l~~~L~~~~~~~~v~~~--~~~~~al~~l~~~~~dlii~-D~~l~----~~~g~~~~~~l~~~ 91 (150)
T 4e7p_A 22 KVLVAEDQSMLRD---AMCQLLTLQPDVESVLQA--KNGQEAIQLLEKESVDIAIL-DVEMP----VKTGLEVLEWIRSE 91 (150)
T ss_dssp EEEEECSCHHHHH---HHHHHHHTSTTEEEEEEE--SSHHHHHHHHTTSCCSEEEE-CSSCS----SSCHHHHHHHHHHT
T ss_pred EEEEEcCCHHHHH---HHHHHHHhCCCcEEEEEE--CCHHHHHHHhhccCCCEEEE-eCCCC----CCcHHHHHHHHHHh
Confidence 4555545544343 4556667777 566543 22221233333344675555 44322 1344444444443
Q ss_pred --CCcEEEEeCCCCcHHHHHHHHHcCc
Q 013932 108 --GHDLIVAADSNASDLIREVATECGV 132 (433)
Q Consensus 108 --GGNlLv~~~~~~~~~lr~ll~elGI 132 (433)
.-.++++++....+.... +-+.|+
T Consensus 92 ~~~~~ii~ls~~~~~~~~~~-~~~~g~ 117 (150)
T 4e7p_A 92 KLETKVVVVTTFKRAGYFER-AVKAGV 117 (150)
T ss_dssp TCSCEEEEEESCCCHHHHHH-HHHTTC
T ss_pred CCCCeEEEEeCCCCHHHHHH-HHHCCC
Confidence 334566666555444433 445564
No 138
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=20.50 E-value=2.7e+02 Score=25.32 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=58.9
Q ss_pred CCCeEEEEEcC-cccccchhhHHHHhhcCCcEEEEecCCCCCcc--ccccccccc---CEEEEeCCCCCcCCCCCCHHHH
Q 013932 28 TDRRVLVLVDD-FAIKSSHSLYFGSLTSRGFQLEFKLADDPNIG--LQRYGQYLY---DALVLFCPSVERFGGSIDVASI 101 (433)
Q Consensus 28 ~~~r~LVl~d~-~~~~~~~S~F~~~L~~rGf~v~~~~~~d~~~~--L~~~ge~~y---d~LII~~p~~~~~~~~ls~~~L 101 (433)
.|+++.+|..+ +..-...+...+.|.++|++++.. |-=+++. ...-|.+.+ +.+.+++.+ . ..+.|
T Consensus 95 ~g~~Va~l~~GDP~~~~~~~~l~~~l~~~gi~v~vi-PGiSs~~aa~a~~G~pl~~~~~~~~~~~~~-~------~~~~l 166 (259)
T 2e0n_A 95 AGRRVAVVSVGDGGFYSTASAIIERARRDGLDCSMT-PGIPAFIAAGSAAGMPLALQSDSVLVLAQI-D------EIGEL 166 (259)
T ss_dssp TTCEEEEEESBCTTBSCTHHHHHHHHHTTTCCEEEE-CCCCHHHHHHHHTTCCSBCTTCCEEEECSC-S------STHHH
T ss_pred CCCeEEEEeCCCCcccccHHHHHHHHHHCCCCEEEe-CChhHHHHHHHhcCCCCcCCCceEEEEcCC-C------CHHHH
Confidence 35666666632 344456667788899999998864 3333322 346666664 445554332 2 23567
Q ss_pred HHHHHCCCcEEEEeCCCCcHHHHHHHHHcC
Q 013932 102 VDFVDSGHDLIVAADSNASDLIREVATECG 131 (433)
Q Consensus 102 ~~Fid~GGNlLv~~~~~~~~~lr~ll~elG 131 (433)
.+.++.++.+.+..++.....+...+.+.|
T Consensus 167 ~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g 196 (259)
T 2e0n_A 167 ERALVTHSTVVVMKLSTVRDELVSFLERYA 196 (259)
T ss_dssp HHHHTTCSEEEECCTTSSGGGHHHHHHHHC
T ss_pred HHHhhcCCEEEEEcccccHHHHHHHHHhCC
Confidence 788887776666666666566666666777
Done!