BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013934
(433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4H3O|A Chain A, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
pdb|4H3O|B Chain B, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
Length = 105
Score = 37.0 bits (84), Expect = 0.021, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 106 FSLGTDGNLVLAEADGTVVWQTNTANKGVVGFK--LLSNGNMVLYDSKGKFIWQS 158
F + D NLVL + T W +NT G G L S+GN V+YDS G+ +W S
Sbjct: 23 FIMQDDCNLVLYD-HSTSTWASNTEIGGKSGCSAVLQSDGNFVVYDSSGRSLWAS 76
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 92 WEANRGKPVRENATFSLGTDGNLVLAEADGTVVWQT-NTANKGVVGFKLLSNGNMVLYDS 150
W +N + + L +DGN V+ ++ G +W + +T G L +GN+++Y
Sbjct: 41 WASNTEIGGKSGCSAVLQSDGNFVVYDSSGRSLWASHSTRGSGNYILILQDDGNVIIY-- 98
Query: 151 KGKFIWQS 158
G IW +
Sbjct: 99 -GSDIWST 105
>pdb|1BWU|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 91 VWEANRGKPVRENATFSLGTDGNLVLAEADGTVVWQTNTA-NKGVVGFKLLSNGNMVLYD 149
VW +N P ++ L +DGN V+ +A+G +W +++ G L +GN+V+Y
Sbjct: 40 VWSSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWASHSVRGNGNYVLVLQEDGNVVIY- 98
Query: 150 SKGKFIWQSFDY 161
G IW + Y
Sbjct: 99 --GSDIWSTNTY 108
>pdb|3M7H|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp.
pdb|3M7H|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp.
pdb|3M7J|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp. In Complex With Met-Mannose
pdb|3M7J|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp. In Complex With Met-Mannose
Length = 276
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 14/80 (17%)
Query: 111 DGNLVLAEADGTVVWQTNTANKGVVGFKLLSNGNMVLYDSKGKFIWQSFDYPTDTLLAGQ 170
DGNLV +G W T KG V +GN+V+Y + +W S
Sbjct: 173 DGNLVAYGPNGAATWNAGTQGKGAVRAVFQGDGNLVVYGAGNAVLWHS------------ 220
Query: 171 SLRVGGVTKLVSRLSAEENV 190
GG V RL A ++
Sbjct: 221 --HTGGHASAVLRLQANGSI 238
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 111 DGNLVLAEADGTVVWQTNTANKGVVGFKLLSNGNMVLYDSKGKFIWQSFDY 161
DGNLV+ A V+W ++T +L +NG++ + D K +W F +
Sbjct: 204 DGNLVVYGAGNAVLWHSHTGGHASAVLRLQANGSIAILDEKP--VWARFGF 252
>pdb|1BWU|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 91 VWEANRGKPVRENATFSLGTDGNLVLAEADGTVVWQTNTA-NKGVVGFKLLSNGNMVLYD 149
VW +N P ++ L +DGN V+ +A+G +W +++ G L +GN+V+Y
Sbjct: 40 VWSSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWASHSVRGNGNYVLVLQEDGNVVIYR 99
Query: 150 SKGKFIWQSFDY 161
S IW + Y
Sbjct: 100 SD---IWSTNTY 108
>pdb|1KJ1|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 91 VWEANRGKPVRENATFSLGTDGNLVLAEADGTVVWQTNTA-NKGVVGFKLLSNGNMVLYD 149
VW N P ++ L +DGN V+ +A+G +W +++ G L +GN+V+Y
Sbjct: 40 VWTTNTDIPGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIY- 98
Query: 150 SKGKFIWQSFDY 161
G IW + Y
Sbjct: 99 --GSDIWSTNTY 108
>pdb|1BWU|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 35.4 bits (80), Expect = 0.060, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 91 VWEANRGKPVRENATFSLGTDGNLVLAEADGTVVWQTNTA-NKGVVGFKLLSNGNMVLYD 149
VW +N G ++ L +DGN V+ +A+G +W +++ G L +GN+V+Y
Sbjct: 40 VWASNTGILGKKGCRAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIYR 99
Query: 150 SKGKFIWQS 158
S IW +
Sbjct: 100 SD---IWST 105
>pdb|1KJ1|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 91 VWEANRGKPVRENATFSLGTDGNLVLAEADGTVVWQTNTA-NKGVVGFKLLSNGNMVLYD 149
VW +N G ++ L +DGN V+ +A+G +W +++ G L +GN+V+Y
Sbjct: 40 VWASNTGILGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIY- 98
Query: 150 SKGKFIWQSFDYP 162
G IW + Y
Sbjct: 99 --GSDIWSTGTYK 109
>pdb|1BWU|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 35.0 bits (79), Expect = 0.079, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 91 VWEANRGKPVRENATFSLGTDGNLVLAEADGTVVWQTNTA-NKGVVGFKLLSNGNMVLYD 149
VW +N G ++ L DGN V+ +A+G +W +++ G L +GN+V+Y
Sbjct: 40 VWASNTGILGKKGCKAVLQADGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIYG 99
Query: 150 SKGKFIWQS 158
S IW +
Sbjct: 100 SD---IWST 105
>pdb|3A0C|A Chain A, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|B Chain B, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|C Chain C, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|D Chain D, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0D|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Monomannoside
pdb|3A0E|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Dimannoside
Length = 110
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 111 DGNLVLAEADGTVVWQTNTANKGV-VGFKLLSNGNMVLYDSKGKFIWQS 158
D N VL ++ G VW +NT G L +NGN+V+YD + IWQ+
Sbjct: 29 DCNFVLYDS-GKPVWASNTGGLGSGCRLTLHNNGNLVIYDQSNRVIWQT 76
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 91 VWEANRGKPVRENATFSLGTDGNLVLAEADGTVVWQTNTANK-GVVGFKLLSNGNMVLYD 149
VW +N G + +L +GNLV+ + V+WQT T K L + N+V+Y
Sbjct: 41 VWASNTGG-LGSGCRLTLHNNGNLVIYDQSNRVIWQTKTNGKEDHYVLVLQQDRNVVIY- 98
Query: 150 SKGKFIWQSFDYP 162
G +W + P
Sbjct: 99 --GPVVWATGSGP 109
>pdb|2DPF|A Chain A, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|B Chain B, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|C Chain C, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|D Chain D, Crystal Structure Of Curculin1 Homodimer
Length = 115
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 105 TFSLGTDGNLVLAEADGTVVWQTNTANKGV-VGFKLLSNGNMVLYDSKGKFIWQS 158
T ++ NLV + +G +W +NT +G LLS+GN+V+YD +W S
Sbjct: 23 TLTIQNKCNLVKYQ-NGRQIWASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVWGS 76
>pdb|2D04|B Chain B, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|D Chain D, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|F Chain F, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|H Chain H, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity
Length = 114
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 105 TFSLGTDGNLVLAEADGTVVWQTNTANKGV-VGFKLLSNGNMVLYDSKGKFIWQS 158
T ++ NLV + +G +W +NT +G LLS+GN+V+YD +W S
Sbjct: 22 TLTIQNKCNLVKYQ-NGRQIWASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVWGS 75
>pdb|1DLP|A Chain A, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|B Chain B, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|C Chain C, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|D Chain D, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|E Chain E, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|F Chain F, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
Length = 236
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 84 NEPLFLWVWEANRGKPVRENATFSLGTDGNLVLAEADGTVVWQTNTANKGVVGFKLLS-N 142
N P L ++ + P R S+ TD NLVL + D V W TNTA KG +L N
Sbjct: 136 NHPQTLHATQSLQLSPYR----LSMETDCNLVLFDRDDRV-WSTNTAGKGTGCRAVLQPN 190
Query: 143 GNMVLYDSKGKFIWQS 158
G M + ++ +W S
Sbjct: 191 GRMDVLTNQNIAVWTS 206
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 106 FSLGTDGNLVLAEADGTVVWQTNTANKGVVGFKLLSNGNMVLYDSKGKFIWQS 158
F++ +D NLVL ++D VW +NTA L S+G +V+ ++ W S
Sbjct: 30 FTMQSDCNLVLFDSD-VRVWASNTAGATGCRAVLQSDGLLVILTAQNTIRWSS 81
>pdb|3RZW|A Chain A, Crystal Structure Of The Monobody Ysmb-9 Bound To Human
Sumo1
pdb|3RZW|B Chain B, Crystal Structure Of The Monobody Ysmb-9 Bound To Human
Sumo1
Length = 95
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 265 PKYDST--ISFLRLGIDGNLKIYTYYDKVDWGPTEVTF 300
P Y ST IS L G+D + +Y YYD W P + +
Sbjct: 56 PGYSSTATISGLSPGVDYTITVYAYYDNYGWSPISINY 93
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 150 SKGKFIWQSFDYPTDTLLAGQSLRVGGVTKLVSRLSAEENVD 191
+ G ++Q DY DTL Q+L GVTK+ R +N+D
Sbjct: 47 ADGVVVYQQLDYTADTL---QALADAGVTKMSLRNVGVDNID 85
>pdb|1MSA|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|B Chain B, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|D Chain D, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1NIV|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1NIV|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1JPC|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With
Mannose-Alpha1,6-(Mannose-Alpha1,3)-Mannose-
Alpha1,6-(Mannose-Alpha1,3)-Mannose
Length = 109
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 106 FSLGTDGNLVLAEADGTVVWQTNTANKGVVGF-KLLSNGNMVLYDSKGKFIWQS 158
F + D NLVL + D +W TNT F + ++GN+V+Y+ K IW S
Sbjct: 23 FIMQEDCNLVLYDVD-KPIWATNTGGLSRSCFLSMQTDGNLVVYNPSNKPIWAS 75
>pdb|2D04|A Chain A, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|C Chain C, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|E Chain E, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|G Chain G, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity
Length = 113
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 105 TFSLGTDGNLVLAEADGTVVWQTNTANKGV-VGFKLLSNGNMVLYDSKGKFIWQS 158
T ++ + NLV + G +W ++T +G L S+GN+++YD +W S
Sbjct: 22 TLTIQNNCNLVKYQ-HGRQIWASDTDGQGSQCRLTLRSDGNLIIYDDNNMVVWGS 75
>pdb|1NPL|A Chain A, Mannose-Specific Agglutinin (Lectin) From Daffodil
(Narcissus Pseudonarcissus) Bulbs In Complex With
Mannose-Alpha1,3-Mannose
pdb|3DZW|A Chain A, Structure Of Narcissus Pseudonarcissus Lectin Complex With
Mannobiose At 1.7 A Resolution, Form Ii
pdb|3DZW|B Chain B, Structure Of Narcissus Pseudonarcissus Lectin Complex With
Mannobiose At 1.7 A Resolution, Form Ii
Length = 109
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 105 TFSLGTDGNLVLAEADGTVVWQTNTAN-KGVVGFKLLSNGNMVLYDSKGKFIWQS 158
F + D NLVL + D +W TNT + S+GN+V+Y + IW S
Sbjct: 22 VFIMQEDCNLVLYDVD-KPIWATNTGGLDRRCHLSMQSDGNLVVYSPRNNPIWAS 75
>pdb|1XD6|A Chain A, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
Length = 112
Score = 28.5 bits (62), Expect = 6.7, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 103 NATFSLGTDGNLVLAEADGTVVWQTNTANK-GVVGFKLLSNGNMVLYDSKGKFIWQS 158
N + DGNLV+ +W +NT + G L + N+V+YD+ IW S
Sbjct: 51 NCILKMQRDGNLVIYSGS-RAMWASNTNRQDGNYYLILQRDRNVVIYDNSNNAIWAS 106
>pdb|2FGZ|A Chain A, Crystal Structure Analysis Of Apo Pullulanase From
Klebsiella Pneumoniae
Length = 926
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 219 FTSYDWFNARDVSLQNVTFNSRPETDEAVAFVQTLDSSANGNILARPK 266
+ S DWFN D SLQ+ +N V ++ D +N +I+AR K
Sbjct: 735 YDSGDWFNRVDYSLQDNNYN--------VGMPRSSDDGSNYDIIARVK 774
>pdb|2FHB|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltose
pdb|2FHC|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotriose
pdb|2FHF|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotetraose
Length = 1083
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 219 FTSYDWFNARDVSLQNVTFNSRPETDEAVAFVQTLDSSANGNILARPK 266
+ S DWFN D SLQ+ +N V ++ D +N +I+AR K
Sbjct: 892 YDSGDWFNRVDYSLQDNNYN--------VGMPRSSDDGSNYDIIARVK 931
>pdb|2FH6|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Glucose
Length = 920
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 219 FTSYDWFNARDVSLQNVTFNSRPETDEAVAFVQTLDSSANGNILARPK 266
+ S DWFN D SLQ+ +N V ++ D +N +I+AR K
Sbjct: 729 YDSGDWFNRVDYSLQDNNYN--------VGMPRSSDDGSNYDIIARVK 768
>pdb|2FH8|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Isomaltose
Length = 922
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 219 FTSYDWFNARDVSLQNVTFNSRPETDEAVAFVQTLDSSANGNILARPK 266
+ S DWFN D SLQ+ +N V ++ D +N +I+AR K
Sbjct: 731 YDSGDWFNRVDYSLQDNNYN--------VGMPRSSDDGSNYDIIARVK 770
>pdb|2XR9|A Chain A, Crystal Structure Of Autotaxin (Enpp2)
Length = 827
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 310 ENECQLPERCGKFGLCDENQCVACPTEKGLLGW-SKDCEPKKVTSC 354
EN C E C G C N V C KG W DCE KV C
Sbjct: 79 ENACHCSEDCLSRGDCCTNYQVVC---KGESHWVDDDCEEIKVPEC 121
>pdb|2XRG|A Chain A, Crystal Structure Of Autotaxin (Enpp2) In Complex With The
Ha155 Boronic Acid Inhibitor
Length = 862
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 310 ENECQLPERCGKFGLCDENQCVACPTEKGLLGW-SKDCEPKKVTSC 354
EN C E C G C N V C KG W DCE KV C
Sbjct: 114 ENACHCSEDCLSRGDCCTNYQVVC---KGESHWVDDDCEEIKVPEC 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,749,188
Number of Sequences: 62578
Number of extensions: 599521
Number of successful extensions: 1218
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1188
Number of HSP's gapped (non-prelim): 47
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)