Query 013934
Match_columns 433
No_of_seqs 253 out of 1560
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:51:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013934.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013934hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01453 B_lectin: D-mannose b 100.0 1.8E-30 3.9E-35 221.8 5.7 103 88-190 2-114 (114)
2 cd00028 B_lectin Bulb-type man 99.9 1.2E-25 2.6E-30 192.6 13.8 108 51-162 7-116 (116)
3 smart00108 B_lectin Bulb-type 99.9 1.2E-24 2.6E-29 185.8 13.3 107 51-161 7-114 (114)
4 PF00954 S_locus_glycop: S-loc 99.8 1.6E-20 3.5E-25 159.4 10.7 107 219-341 1-108 (110)
5 cd01098 PAN_AP_plant Plant PAN 99.6 1.1E-14 2.5E-19 116.6 8.0 80 351-431 2-84 (84)
6 PF08276 PAN_2: PAN-like domai 99.5 2.2E-14 4.9E-19 110.5 6.0 59 358-416 4-66 (66)
7 cd00129 PAN_APPLE PAN/APPLE-li 99.3 7.6E-12 1.7E-16 99.9 6.1 67 359-430 9-80 (80)
8 smart00108 B_lectin Bulb-type 98.7 3.8E-08 8.2E-13 83.9 8.6 85 105-221 23-111 (114)
9 cd00028 B_lectin Bulb-type man 98.7 4.8E-08 1E-12 83.5 8.7 86 105-222 23-113 (116)
10 smart00473 PAN_AP divergent su 98.6 1.3E-07 2.7E-12 73.9 7.8 72 359-430 4-78 (78)
11 PF01453 B_lectin: D-mannose b 98.3 1.4E-05 3E-10 68.2 12.1 99 52-162 12-113 (114)
12 cd01100 APPLE_Factor_XI_like S 98.1 4.7E-06 1E-10 65.2 4.4 54 363-416 8-61 (73)
13 smart00223 APPLE APPLE domain. 95.5 0.02 4.3E-07 45.6 4.2 49 364-412 6-57 (79)
14 PF00024 PAN_1: PAN domain Thi 95.5 0.024 5.2E-07 43.9 4.6 52 360-411 3-55 (79)
15 PF14295 PAN_4: PAN domain; PD 95.0 0.021 4.6E-07 40.6 2.7 33 378-410 14-51 (51)
16 cd01099 PAN_AP_HGF Subfamily o 90.2 0.66 1.4E-05 36.7 5.1 33 379-411 24-58 (80)
17 PF08277 PAN_3: PAN-like domai 90.0 1.3 2.9E-05 33.8 6.6 51 378-430 18-71 (71)
18 smart00605 CW CW domain. 88.7 2.3 4.9E-05 34.6 7.4 52 379-431 21-75 (94)
19 PF13360 PQQ_2: PQQ-like domai 74.7 18 0.0004 33.4 8.8 71 88-158 13-102 (238)
20 TIGR03300 assembly_YfgL outer 70.2 19 0.0004 36.5 8.2 49 109-157 72-130 (377)
21 KOG4649 PQQ (pyrrolo-quinoline 69.3 18 0.00038 35.6 7.1 45 87-131 168-218 (354)
22 PF13360 PQQ_2: PQQ-like domai 67.8 37 0.00081 31.3 9.2 71 88-158 56-148 (238)
23 PRK11138 outer membrane biogen 67.2 17 0.00036 37.3 7.2 57 102-158 119-186 (394)
24 cd00053 EGF Epidermal growth f 63.1 7.2 0.00016 24.5 2.3 30 313-342 2-32 (36)
25 PRK11138 outer membrane biogen 62.2 26 0.00056 35.9 7.4 20 109-128 342-362 (394)
26 cd00216 PQQ_DH Dehydrogenases 53.8 44 0.00096 35.5 7.7 71 88-158 39-136 (488)
27 PF01436 NHL: NHL repeat; Int 50.1 26 0.00056 21.7 3.2 22 104-125 5-26 (28)
28 cd05845 Ig2_L1-CAM_like Second 47.4 29 0.00064 28.5 4.0 31 88-118 34-64 (95)
29 TIGR03300 assembly_YfgL outer 47.0 93 0.002 31.3 8.5 70 89-158 86-171 (377)
30 PF05935 Arylsulfotrans: Aryls 45.8 71 0.0015 34.0 7.7 58 89-148 138-206 (477)
31 TIGR03066 Gem_osc_para_1 Gemma 45.0 52 0.0011 27.9 5.2 53 102-154 34-104 (111)
32 PF07354 Sp38: Zona-pellucida- 42.5 26 0.00057 34.2 3.4 32 88-119 13-44 (271)
33 COG1520 FOG: WD40-like repeat 41.8 1.2E+02 0.0025 30.8 8.3 73 87-159 130-226 (370)
34 PF07645 EGF_CA: Calcium-bindi 41.0 7.1 0.00015 26.7 -0.5 30 311-340 3-34 (42)
35 smart00179 EGF_CA Calcium-bind 40.5 30 0.00065 22.3 2.5 30 311-340 3-33 (39)
36 PF01683 EB: EB module; Inter 38.3 28 0.00061 24.8 2.3 30 309-341 18-47 (52)
37 PF13570 PQQ_3: PQQ-like domai 37.2 43 0.00094 22.2 3.0 8 91-98 4-11 (40)
38 PF05935 Arylsulfotrans: Aryls 36.2 33 0.00072 36.5 3.4 53 111-164 127-187 (477)
39 PF07172 GRP: Glycine rich pro 36.1 21 0.00045 29.4 1.4 18 1-18 1-18 (95)
40 cd00054 EGF_CA Calcium-binding 31.6 47 0.001 20.9 2.4 30 311-340 3-33 (38)
41 cd05852 Ig5_Contactin-1 Fifth 31.3 1.8E+02 0.0038 22.0 6.0 31 88-119 16-46 (73)
42 TIGR03075 PQQ_enz_alc_DH PQQ-d 30.7 2.4E+02 0.0052 30.4 8.9 70 89-158 48-146 (527)
43 PF06006 DUF905: Bacterial pro 28.8 51 0.0011 25.5 2.3 17 145-161 35-51 (70)
44 KOG0291 WD40-repeat-containing 28.1 2E+02 0.0042 32.4 7.4 53 104-156 354-419 (893)
45 PF01011 PQQ: PQQ enzyme repea 28.0 90 0.002 20.5 3.3 22 109-130 7-29 (38)
46 PF14269 Arylsulfotran_2: Aryl 27.5 6.2E+02 0.013 25.1 11.8 11 137-147 265-275 (299)
47 PLN00033 photosystem II stabil 25.9 1.9E+02 0.0041 30.1 6.8 48 110-157 257-306 (398)
48 smart00564 PQQ beta-propeller 25.1 1.4E+02 0.0031 18.3 3.8 17 110-126 14-31 (33)
49 PHA02887 EGF-like protein; Pro 23.2 75 0.0016 27.2 2.6 29 311-340 84-117 (126)
50 KOG0640 mRNA cleavage stimulat 22.8 3E+02 0.0066 27.8 7.1 66 92-157 252-333 (430)
51 PF07974 EGF_2: EGF-like domai 21.8 65 0.0014 20.9 1.6 23 317-340 6-28 (32)
52 COG1520 FOG: WD40-like repeat 21.7 1.6E+02 0.0035 29.7 5.3 55 103-157 111-178 (370)
53 PF12458 DUF3686: ATPase invol 21.7 2.7E+02 0.0058 29.3 6.7 58 51-120 310-368 (448)
54 PF02237 BPL_C: Biotin protein 21.3 81 0.0018 22.2 2.2 15 138-152 21-35 (48)
55 PF14269 Arylsulfotran_2: Aryl 21.3 5.7E+02 0.012 25.3 9.0 45 106-150 149-219 (299)
56 cd00216 PQQ_DH Dehydrogenases 20.8 2.7E+02 0.0058 29.5 7.0 47 104-150 407-456 (488)
57 TIGR03074 PQQ_membr_DH membran 20.0 4.8E+02 0.01 29.7 8.9 42 88-129 164-222 (764)
No 1
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.96 E-value=1.8e-30 Score=221.78 Aligned_cols=103 Identities=48% Similarity=0.788 Sum_probs=76.4
Q ss_pred eeEEEEeccCCcccc---CcEEEEcCCCcEEEEecCCcEEEEe-ccCCCc--eeEEEEeeCCCeeEeecCceEEEcccCC
Q 013934 88 FLWVWEANRGKPVRE---NATFSLGTDGNLVLAEADGTVVWQT-NTANKG--VVGFKLLSNGNMVLYDSKGKFIWQSFDY 161 (433)
Q Consensus 88 ~tvVW~ANr~~Pv~~---~~~l~l~~~GnLvL~~~~g~~vWst-~~~~~~--~~~~~L~d~GNLVl~~~~~~~lWqSFD~ 161 (433)
+||||+|||++||.. ..+|.|+.||||+|+|..++++|++ ++.+.+ +..|+|+|+|||||+|..+++|||||||
T Consensus 2 ~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~~~~lW~Sf~~ 81 (114)
T PF01453_consen 2 RTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSSGNVLWQSFDY 81 (114)
T ss_dssp --------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEETTSEEEEESTTS
T ss_pred cccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEeecceEEEeecCC
Confidence 589999999999953 4799999999999999999999999 666554 7889999999999999999999999999
Q ss_pred CCccccCCCceeecc----eeEEEEeCCCCCCC
Q 013934 162 PTDTLLAGQSLRVGG----VTKLVSRLSAEENV 190 (433)
Q Consensus 162 PTDTLLpGq~L~~~g----~~~L~S~~S~~dps 190 (433)
||||+||||+|+.+. ...|+||++.+|||
T Consensus 82 ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 82 PTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp SS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred CccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 999999999997631 13499999999986
No 2
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.93 E-value=1.2e-25 Score=192.57 Aligned_cols=108 Identities=41% Similarity=0.680 Sum_probs=96.9
Q ss_pred ceEEEeCCCcEEEEEEeCCCCC-eEEEEEEceecCCCceeEEEEeccCCccccCcEEEEcCCCcEEEEecCCcEEEEecc
Q 013934 51 YRMLSIFNSPFQLAFYNTTPNA-YTLALRLGLQRNEPLFLWVWEANRGKPVRENATFSLGTDGNLVLAEADGTVVWQTNT 129 (433)
Q Consensus 51 ~~~l~s~~g~F~lGF~~~~~~~-~~l~Iw~~~~~~~~~~tvVW~ANr~~Pv~~~~~l~l~~~GnLvL~~~~g~~vWst~~ 129 (433)
++.|+|.++.|++|||...... ++.+|||.... .++||+|||+.|....++|.|+.||||+|+|.+|.++|++++
T Consensus 7 ~~~l~s~~~~f~~G~~~~~~q~~dgnlv~~~~~~----~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~~ 82 (116)
T cd00028 7 GQTLVSSGSLFELGFFKLIMQSRDYNLILYKGSS----RTVVWVANRDNPSGSSCTLTLQSDGNLVIYDGSGTVVWSSNT 82 (116)
T ss_pred CCEEEeCCCcEEEecccCCCCCCeEEEEEEeCCC----CeEEEECCCCCCCCCCEEEEEecCCCeEEEcCCCcEEEEecc
Confidence 6789999999999999986665 89999997642 468999999999666789999999999999999999999998
Q ss_pred CC-CceeEEEEeeCCCeeEeecCceEEEcccCCC
Q 013934 130 AN-KGVVGFKLLSNGNMVLYDSKGKFIWQSFDYP 162 (433)
Q Consensus 130 ~~-~~~~~~~L~d~GNLVl~~~~~~~lWqSFD~P 162 (433)
.+ .++..|+|+|+|||||++.++++||||||||
T Consensus 83 ~~~~~~~~~~L~ddGnlvl~~~~~~~~W~Sf~~P 116 (116)
T cd00028 83 TRVNGNYVLVLLDDGNLVLYDSDGNFLWQSFDYP 116 (116)
T ss_pred cCCCCceEEEEeCCCCEEEECCCCCEEEcCCCCC
Confidence 76 5667899999999999999999999999999
No 3
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.92 E-value=1.2e-24 Score=185.83 Aligned_cols=107 Identities=42% Similarity=0.695 Sum_probs=96.2
Q ss_pred ceEEEeCCCcEEEEEEeCCCCCeEEEEEEceecCCCceeEEEEeccCCccccCcEEEEcCCCcEEEEecCCcEEEEeccC
Q 013934 51 YRMLSIFNSPFQLAFYNTTPNAYTLALRLGLQRNEPLFLWVWEANRGKPVRENATFSLGTDGNLVLAEADGTVVWQTNTA 130 (433)
Q Consensus 51 ~~~l~s~~g~F~lGF~~~~~~~~~l~Iw~~~~~~~~~~tvVW~ANr~~Pv~~~~~l~l~~~GnLvL~~~~g~~vWst~~~ 130 (433)
++.|+|+++.|++|||......+..+|||.... .++||+|||+.|+..+++|.|+.||||+|+|.+|.++|++++.
T Consensus 7 ~~~l~s~~~~f~~G~~~~~~q~dgnlV~~~~~~----~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~t~ 82 (114)
T smart00108 7 GQTLVSGNSLFELGFFTLIMQNDYNLILYKSSS----RTVVWVANRDNPVSDSCTLTLQSDGNLVLYDGDGRVVWSSNTT 82 (114)
T ss_pred CCEEecCCCcEeeeccccCCCCCEEEEEEECCC----CcEEEECCCCCCCCCCEEEEEeCCCCEEEEeCCCCEEEEeccc
Confidence 688999999999999998766788999997642 4689999999999877899999999999999999999999986
Q ss_pred -CCceeEEEEeeCCCeeEeecCceEEEcccCC
Q 013934 131 -NKGVVGFKLLSNGNMVLYDSKGKFIWQSFDY 161 (433)
Q Consensus 131 -~~~~~~~~L~d~GNLVl~~~~~~~lWqSFD~ 161 (433)
+.+...|+|+|+|||||++.++++|||||||
T Consensus 83 ~~~~~~~~~L~ddGnlvl~~~~~~~~W~Sf~~ 114 (114)
T smart00108 83 GANGNYVLVLLDDGNLVIYDSDGNFLWQSFDY 114 (114)
T ss_pred CCCCceEEEEeCCCCEEEECCCCCEEeCCCCC
Confidence 5566789999999999999999999999997
No 4
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.83 E-value=1.6e-20 Score=159.39 Aligned_cols=107 Identities=21% Similarity=0.359 Sum_probs=87.0
Q ss_pred EecCCCCCCccCCcceEEEecccCCCcceeEEEEEecCC-CceEEEcccCCCeEEEEEEccCCcEEEEEecCCCCCCCce
Q 013934 219 FTSYDWFNARDVSLQNVTFNSRPETDEAVAFVQTLDSSA-NGNILARPKYDSTISFLRLGIDGNLKIYTYYDKVDWGPTE 297 (433)
Q Consensus 219 w~s~~w~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~rl~Ld~dG~lr~y~w~~~~~~~~W~ 297 (433)
||+|+|+| ..|++.|+|.....+.+.+..+. ..++.+...+.+.++|++||+||+||+|.|.+ ..+.|.
T Consensus 1 wrsG~WnG--------~~f~g~p~~~~~~~~~~~fv~~~~e~~~t~~~~~~s~~~r~~ld~~G~l~~~~w~~--~~~~W~ 70 (110)
T PF00954_consen 1 WRSGPWNG--------QRFSGIPEMSSNSLYNYSFVSNNEEVYYTYSLSNSSVLSRLVLDSDGQLQRYIWNE--STQSWS 70 (110)
T ss_pred CCccccCC--------eEECCcccccccceeEEEEEECCCeEEEEEecCCCceEEEEEEeeeeEEEEEEEec--CCCcEE
Confidence 78999987 58999998775545555554333 34456665667789999999999999999987 468999
Q ss_pred EEEEeeccCCCCCCCCCcccCCCCCcccCCCCCCCCCCCCCCCC
Q 013934 298 VTFTLFDRDSSWENECQLPERCGKFGLCDENQCVACPTEKGLLG 341 (433)
Q Consensus 298 ~~~~~~~~~~~P~~~C~~~g~CG~~giC~~~~~~~C~c~~g~~~ 341 (433)
+.|. +|.++||+|+.||+||+|+.+..+.|.|++||..
T Consensus 71 ~~~~------~p~d~Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 71 VFWS------APKDQCDVYGFCGPNGICNSNNSPKCSCLPGFEP 108 (110)
T ss_pred EEEE------ecccCCCCccccCCccEeCCCCCCceECCCCcCC
Confidence 9995 4889999999999999999888888999999853
No 5
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=99.55 E-value=1.1e-14 Score=116.57 Aligned_cols=80 Identities=20% Similarity=0.427 Sum_probs=64.1
Q ss_pred ccCCCCC--CceeEEEccccccCcceeecccCCHHHHHHHhhccCCeEEEEecCCCcceEEcc-ccCcceEeCCCCcEEE
Q 013934 351 VTSCRPN--DFHYHKVEGVDHYMSKYTSGAAIKVEDCGRKCTSDCKCLGYFYHQETSRCWIAY-DLKTLTKFPNSTHVGF 427 (433)
Q Consensus 351 ~~sC~~~--~~~f~~l~~v~~~~~~~~~~~~~s~~~C~~~Cl~nCsC~a~~y~~~~~~C~~~~-~L~~l~~~~~~~~~~y 427 (433)
+++|.+. .+.|++++++++|+..+.. ...++++|+++||+||+|+||+|.+++++|++|. .+.+.+.....+.++|
T Consensus 2 ~~~C~~~~~~~~f~~~~~~~~~~~~~~~-~~~s~~~C~~~Cl~nCsC~a~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~y 80 (84)
T cd01098 2 PLNCGGDGSTDGFLKLPDVKLPDNASAI-TAISLEECREACLSNCSCTAYAYNNGSGGCLLWNGLLNNLRSLSSGGGTLY 80 (84)
T ss_pred CcccCCCCCCCEEEEeCCeeCCCchhhh-ccCCHHHHHHHHhcCCCcceeeecCCCCeEEEEeceecceEeecCCCcEEE
Confidence 4567654 3689999999999776554 5689999999999999999999987778999996 5656555444458999
Q ss_pred EEee
Q 013934 428 IKAP 431 (433)
Q Consensus 428 iKv~ 431 (433)
|||+
T Consensus 81 iKv~ 84 (84)
T cd01098 81 LRLA 84 (84)
T ss_pred EEeC
Confidence 9996
No 6
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=99.51 E-value=2.2e-14 Score=110.50 Aligned_cols=59 Identities=24% Similarity=0.519 Sum_probs=50.2
Q ss_pred CceeEEEccccccCcceeec-ccCCHHHHHHHhhccCCeEEEEecC--CCcceEEcc-ccCcc
Q 013934 358 DFHYHKVEGVDHYMSKYTSG-AAIKVEDCGRKCTSDCKCLGYFYHQ--ETSRCWIAY-DLKTL 416 (433)
Q Consensus 358 ~~~f~~l~~v~~~~~~~~~~-~~~s~~~C~~~Cl~nCsC~a~~y~~--~~~~C~~~~-~L~~l 416 (433)
++.|++|++|++|++..... .++++++||++||+||||+||+|.+ ++++|++|. +|+|+
T Consensus 4 ~d~F~~l~~~~~p~~~~~~~~~~~s~~~C~~~Cl~nCsC~Ayay~~~~~~~~C~lW~~~L~d~ 66 (66)
T PF08276_consen 4 GDGFLKLPNMKLPDFDNAIVDSSVSLEECEKACLSNCSCTAYAYSNLSGGGGCLLWYGDLVDL 66 (66)
T ss_pred CCEEEEECCeeCCCCcceeeecCCCHHHHHhhcCCCCCEeeEEeeccCCCCEEEEEcCEeecC
Confidence 46899999999998765443 4589999999999999999999975 578999995 78764
No 7
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=99.27 E-value=7.6e-12 Score=99.91 Aligned_cols=67 Identities=9% Similarity=0.149 Sum_probs=56.9
Q ss_pred ceeEEEccccccCcceeecccCCHHHHHHHhhc---cCCeEEEEecCCCcceEEcc-cc-CcceEeCCCCcEEEEEe
Q 013934 359 FHYHKVEGVDHYMSKYTSGAAIKVEDCGRKCTS---DCKCLGYFYHQETSRCWIAY-DL-KTLTKFPNSTHVGFIKA 430 (433)
Q Consensus 359 ~~f~~l~~v~~~~~~~~~~~~~s~~~C~~~Cl~---nCsC~a~~y~~~~~~C~~~~-~L-~~l~~~~~~~~~~yiKv 430 (433)
..|+++.+|+.|+... .++++|+++|++ ||+|+||+|...+.+|++|. +| .++++..+.+.++|||.
T Consensus 9 g~fl~~~~~klpd~~~-----~s~~eC~~~Cl~~~~nCsC~Aya~~~~~~gC~~W~~~l~~d~~~~~~~g~~Ly~r~ 80 (80)
T cd00129 9 GTTLIKIALKIKTTKA-----NTADECANRCEKNGLPFSCKAFVFAKARKQCLWFPFNSMSGVRKEFSHGFDLYENK 80 (80)
T ss_pred CeEEEeecccCCcccc-----cCHHHHHHHHhcCCCCCCceeeeccCCCCCeEEecCcchhhHHhccCCCceeEeEC
Confidence 4688999999886543 689999999999 99999999976557899995 78 88888777789999983
No 8
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=98.75 E-value=3.8e-08 Score=83.86 Aligned_cols=85 Identities=34% Similarity=0.620 Sum_probs=61.9
Q ss_pred EEEEcCCCcEEEEecC-CcEEEEeccCCC--ceeEEEEeeCCCeeEeecCceEEEcccCCCCccccCCCceeecceeEEE
Q 013934 105 TFSLGTDGNLVLAEAD-GTVVWQTNTANK--GVVGFKLLSNGNMVLYDSKGKFIWQSFDYPTDTLLAGQSLRVGGVTKLV 181 (433)
Q Consensus 105 ~l~l~~~GnLvL~~~~-g~~vWst~~~~~--~~~~~~L~d~GNLVl~~~~~~~lWqSFD~PTDTLLpGq~L~~~g~~~L~ 181 (433)
++.++.||+||+++.. +.+||++++... ....+.|+++|||||++.++.+||+|= |
T Consensus 23 ~~~~q~dgnlV~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~---t------------------ 81 (114)
T smart00108 23 TLIMQNDYNLILYKSSSRTVVWVANRDNPVSDSCTLTLQSDGNLVLYDGDGRVVWSSN---T------------------ 81 (114)
T ss_pred ccCCCCCEEEEEEECCCCcEEEECCCCCCCCCCEEEEEeCCCCEEEEeCCCCEEEEec---c------------------
Confidence 4566789999999875 579999998532 236789999999999999899999971 0
Q ss_pred EeCCCCCCCCcccEEEecCCC-cceeeecCCCCCCeeEEec
Q 013934 182 SRLSAEENVDGPYSFVMEPKR-AAMYYKSSNSPEPVLYFTS 221 (433)
Q Consensus 182 S~~S~~dps~G~ysl~~~~~g-l~l~~~~~~~~~~~~Yw~s 221 (433)
+ ...|.+.+.|+++| +++ +..+ + .+.|.+
T Consensus 82 ~------~~~~~~~~~L~ddGnlvl-~~~~-~---~~~W~S 111 (114)
T smart00108 82 T------GANGNYVLVLLDDGNLVI-YDSD-G---NFLWQS 111 (114)
T ss_pred c------CCCCceEEEEeCCCCEEE-ECCC-C---CEEeCC
Confidence 0 13467889999887 544 3332 1 456765
No 9
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=98.73 E-value=4.8e-08 Score=83.49 Aligned_cols=86 Identities=31% Similarity=0.612 Sum_probs=62.5
Q ss_pred EEEEcC-CCcEEEEecC-CcEEEEeccCC--CceeEEEEeeCCCeeEeecCceEEEcccCCCCccccCCCceeecceeEE
Q 013934 105 TFSLGT-DGNLVLAEAD-GTVVWQTNTAN--KGVVGFKLLSNGNMVLYDSKGKFIWQSFDYPTDTLLAGQSLRVGGVTKL 180 (433)
Q Consensus 105 ~l~l~~-~GnLvL~~~~-g~~vWst~~~~--~~~~~~~L~d~GNLVl~~~~~~~lWqSFD~PTDTLLpGq~L~~~g~~~L 180 (433)
++.++. ||+||+++.. +.+||++++.. .....+.|+++|||||+|.++.+||+|=-
T Consensus 23 ~~~~q~~dgnlv~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~~-------------------- 82 (116)
T cd00028 23 KLIMQSRDYNLILYKGSSRTVVWVANRDNPSGSSCTLTLQSDGNLVIYDGSGTVVWSSNT-------------------- 82 (116)
T ss_pred cCCCCCCeEEEEEEeCCCCeEEEECCCCCCCCCCEEEEEecCCCeEEEcCCCcEEEEecc--------------------
Confidence 345666 9999999865 57999999864 34567999999999999999999999721
Q ss_pred EEeCCCCCCCCcccEEEecCCC-cceeeecCCCCCCeeEEecC
Q 013934 181 VSRLSAEENVDGPYSFVMEPKR-AAMYYKSSNSPEPVLYFTSY 222 (433)
Q Consensus 181 ~S~~S~~dps~G~ysl~~~~~g-l~l~~~~~~~~~~~~Yw~s~ 222 (433)
+ ...+.+.+.|+++| ++++ ... + .+.|.+.
T Consensus 83 -~------~~~~~~~~~L~ddGnlvl~-~~~-~---~~~W~Sf 113 (116)
T cd00028 83 -T------RVNGNYVLVLLDDGNLVLY-DSD-G---NFLWQSF 113 (116)
T ss_pred -c------CCCCceEEEEeCCCCEEEE-CCC-C---CEEEcCC
Confidence 0 02467889998887 5543 322 1 4568764
No 10
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=98.63 E-value=1.3e-07 Score=73.94 Aligned_cols=72 Identities=18% Similarity=0.339 Sum_probs=55.0
Q ss_pred ceeEEEccccccCcceeecccCCHHHHHHHhhc-cCCeEEEEecCCCcceEEcc--ccCcceEeCCCCcEEEEEe
Q 013934 359 FHYHKVEGVDHYMSKYTSGAAIKVEDCGRKCTS-DCKCLGYFYHQETSRCWIAY--DLKTLTKFPNSTHVGFIKA 430 (433)
Q Consensus 359 ~~f~~l~~v~~~~~~~~~~~~~s~~~C~~~Cl~-nCsC~a~~y~~~~~~C~~~~--~L~~l~~~~~~~~~~yiKv 430 (433)
..|.+++++.++..........++++|+++|++ +|+|.||.|..+++.|++|. .+.+.....+.+.+.|.|.
T Consensus 4 ~~f~~~~~~~l~~~~~~~~~~~s~~~C~~~C~~~~~~C~s~~y~~~~~~C~l~~~~~~~~~~~~~~~~~~~y~~~ 78 (78)
T smart00473 4 DCFVRLPNTKLPGFSRIVISVASLEECASKCLNSNCSCRSFTYNNGTKGCLLWSESSLGDARLFPSGGVDLYEKI 78 (78)
T ss_pred ceeEEecCccCCCCcceeEcCCCHHHHHHHhCCCCCceEEEEEcCCCCEEEEeeCCccccceecccCCceeEEeC
Confidence 468899999987544433345799999999999 99999999976668999997 4555554455667788763
No 11
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=98.28 E-value=1.4e-05 Score=68.25 Aligned_cols=99 Identities=22% Similarity=0.304 Sum_probs=65.6
Q ss_pred eEEEeCCCcEEEEEEeCCCCCeEEEEEEceecCCCceeEEEEe-ccCCccccCcEEEEcCCCcEEEEecCCcEEEEeccC
Q 013934 52 RMLSIFNSPFQLAFYNTTPNAYTLALRLGLQRNEPLFLWVWEA-NRGKPVRENATFSLGTDGNLVLAEADGTVVWQTNTA 130 (433)
Q Consensus 52 ~~l~s~~g~F~lGF~~~~~~~~~l~Iw~~~~~~~~~~tvVW~A-Nr~~Pv~~~~~l~l~~~GnLvL~~~~g~~vWst~~~ 130 (433)
+.|.+.++.+.|-|.. +++ |.| |.. . .++||.. +...+......+.|+.||||||+|..+.++|++..
T Consensus 12 ~p~~~~s~~~~L~l~~--dGn--Lvl-~~~----~-~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~~~~lW~Sf~- 80 (114)
T PF01453_consen 12 SPLTSSSGNYTLILQS--DGN--LVL-YDS----N-GSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSSGNVLWQSFD- 80 (114)
T ss_dssp EEEEECETTEEEEEET--TSE--EEE-EET----T-TEEEEE--S-TTSS-SSEEEEEETTSEEEEEETTSEEEEESTT-
T ss_pred cccccccccccceECC--CCe--EEE-EcC----C-CCEEEEecccCCccccCeEEEEeCCCCEEEEeecceEEEeecC-
Confidence 4555545788888875 443 333 321 1 3569999 44444334678999999999999999999999943
Q ss_pred CCceeEEEEee--CCCeeEeecCceEEEcccCCC
Q 013934 131 NKGVVGFKLLS--NGNMVLYDSKGKFIWQSFDYP 162 (433)
Q Consensus 131 ~~~~~~~~L~d--~GNLVl~~~~~~~lWqSFD~P 162 (433)
....+.+.+++ .||++ +.....++|.|=+.|
T Consensus 81 ~ptdt~L~~q~l~~~~~~-~~~~~~~sw~s~~dp 113 (114)
T PF01453_consen 81 YPTDTLLPGQKLGDGNVT-GKNDSLTSWSSNTDP 113 (114)
T ss_dssp SSS-EEEEEET--TSEEE-EESTSSEEEESS---
T ss_pred CCccEEEeccCcccCCCc-cccceEEeECCCCCC
Confidence 33445567777 88988 766678999986666
No 12
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=98.06 E-value=4.7e-06 Score=65.23 Aligned_cols=54 Identities=26% Similarity=0.509 Sum_probs=43.1
Q ss_pred EEccccccCcceeecccCCHHHHHHHhhccCCeEEEEecCCCcceEEccccCcc
Q 013934 363 KVEGVDHYMSKYTSGAAIKVEDCGRKCTSDCKCLGYFYHQETSRCWIAYDLKTL 416 (433)
Q Consensus 363 ~l~~v~~~~~~~~~~~~~s~~~C~~~Cl~nCsC~a~~y~~~~~~C~~~~~L~~l 416 (433)
.++++++++.+.......+.++|++.|+.+|+|.||.|..+.+.|+++......
T Consensus 8 ~~~~~~~~g~d~~~~~~~s~~~Cq~~C~~~~~C~afT~~~~~~~C~lk~~~~~~ 61 (73)
T cd01100 8 QGSNVDFRGGDLSTVFASSAEQCQAACTADPGCLAFTYNTKSKKCFLKSSEGTL 61 (73)
T ss_pred ccCCCccccCCcceeecCCHHHHHHHcCCCCCceEEEEECCCCeEEcccCCCCc
Confidence 456888877666544456899999999999999999998778899999754433
No 13
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=95.50 E-value=0.02 Score=45.62 Aligned_cols=49 Identities=20% Similarity=0.431 Sum_probs=41.7
Q ss_pred EccccccCcceeecccCCHHHHHHHhhccCCeEEEEecCCCc---ceEEccc
Q 013934 364 VEGVDHYMSKYTSGAAIKVEDCGRKCTSDCKCLGYFYHQETS---RCWIAYD 412 (433)
Q Consensus 364 l~~v~~~~~~~~~~~~~s~~~C~~~Cl~nCsC~a~~y~~~~~---~C~~~~~ 412 (433)
.+++++++.+.......+.++|++.|..+=.|.+|.|..... .|+++..
T Consensus 6 ~~~~df~G~Dl~~~~~~~~~~Cq~~Ct~~~~C~~FTf~~~~~~~~~C~LK~s 57 (79)
T smart00223 6 YKNVDFRGSDINTVYVPSAQVCQKRCTSHPRCLFFTFSTNEPPEEKCLLKDS 57 (79)
T ss_pred ccCccccCceeeeeecCCHHHHHHhhcCCCCccEEEeeCCCCCCCEeEeCcC
Confidence 578888888876666689999999999999999999976666 8999964
No 14
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=95.45 E-value=0.024 Score=43.91 Aligned_cols=52 Identities=13% Similarity=0.463 Sum_probs=41.4
Q ss_pred eeEEEccccccCcceeecccCCHHHHHHHhhccCC-eEEEEecCCCcceEEcc
Q 013934 360 HYHKVEGVDHYMSKYTSGAAIKVEDCGRKCTSDCK-CLGYFYHQETSRCWIAY 411 (433)
Q Consensus 360 ~f~~l~~v~~~~~~~~~~~~~s~~~C~~~Cl~nCs-C~a~~y~~~~~~C~~~~ 411 (433)
.|.++++..+...........++++|.++|+.+=. |.+|.|......|.+..
T Consensus 3 ~f~~~~~~~l~~~~~~~~~v~s~~~C~~~C~~~~~~C~s~~y~~~~~~C~L~~ 55 (79)
T PF00024_consen 3 AFERIPGYRLSGHSIKEINVPSLEECAQLCLNEPRRCKSFNYDPSSKTCYLSS 55 (79)
T ss_dssp TEEEEEEEEEESCEEEEEEESSHHHHHHHHHHSTT-ESEEEEETTTTEEEEEC
T ss_pred CeEEECCEEEeCCcceEEcCCCHHHHHhhcCcCcccCCeEEEECCCCEEEEcC
Confidence 37788887776544433334699999999999999 99999998888999974
No 15
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=94.96 E-value=0.021 Score=40.59 Aligned_cols=33 Identities=24% Similarity=0.739 Sum_probs=18.0
Q ss_pred ccCCHHHHHHHhhccCCeEEEEecC-----CCcceEEc
Q 013934 378 AAIKVEDCGRKCTSDCKCLGYFYHQ-----ETSRCWIA 410 (433)
Q Consensus 378 ~~~s~~~C~~~Cl~nCsC~a~~y~~-----~~~~C~~~ 410 (433)
...+.++|.++|..+=.|.+|.|.. ..+.|+|+
T Consensus 14 ~~~s~~~C~~~C~~~~~C~~~~~~~~~~~~~~~~C~LK 51 (51)
T PF14295_consen 14 TASSPEECQAACAADPGCQAFTFNPPGCPSSSGRCYLK 51 (51)
T ss_dssp ----HHHHHHHHHTSTT--EEEEETTEE----------
T ss_pred cCCCHHHHHHHccCCCCCCEEEEECCCcccccccccCC
Confidence 3468999999999999999999976 45788875
No 16
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=90.16 E-value=0.66 Score=36.73 Aligned_cols=33 Identities=24% Similarity=0.686 Sum_probs=29.6
Q ss_pred cCCHHHHHHHhhc--cCCeEEEEecCCCcceEEcc
Q 013934 379 AIKVEDCGRKCTS--DCKCLGYFYHQETSRCWIAY 411 (433)
Q Consensus 379 ~~s~~~C~~~Cl~--nCsC~a~~y~~~~~~C~~~~ 411 (433)
..++++|.++|++ +=.|.+|.|......|.+-.
T Consensus 24 ~~s~~~C~~~C~~~~~f~CrSf~y~~~~~~C~L~~ 58 (80)
T cd01099 24 VASLEECLRKCLEETEFTCRSFNYNYKSKECILSD 58 (80)
T ss_pred cCCHHHHHHHhCCCCCceEeEEEEEcCCCEEEEeC
Confidence 4789999999999 99999999987788999864
No 17
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=89.97 E-value=1.3 Score=33.76 Aligned_cols=51 Identities=22% Similarity=0.471 Sum_probs=37.2
Q ss_pred ccCCHHHHHHHhhccCCeEEEEecCCCcceEEc--cccCcceEeC-CCCcEEEEEe
Q 013934 378 AAIKVEDCGRKCTSDCKCLGYFYHQETSRCWIA--YDLKTLTKFP-NSTHVGFIKA 430 (433)
Q Consensus 378 ~~~s~~~C~~~Cl~nCsC~a~~y~~~~~~C~~~--~~L~~l~~~~-~~~~~~yiKv 430 (433)
...+.++|-+.|..+=.|.++.++ ...|.+. +.+..+++.. +.+..+-+|+
T Consensus 18 ~~~sw~~Cv~~C~~~~~C~la~~~--~~~C~~y~~~~i~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 18 TNTSWDDCVQKCYNDENCVLAYFD--SGKCYLYNYGSISTVQKTDSSSGNKVAFKI 71 (71)
T ss_pred cCCCHHHHhHHhCCCCEEEEEEeC--CCCEEEEEcCCEEEEEEeecCCCeEEEEEC
Confidence 347899999999999999999887 5689987 3555666543 3445555564
No 18
>smart00605 CW CW domain.
Probab=88.71 E-value=2.3 Score=34.63 Aligned_cols=52 Identities=19% Similarity=0.437 Sum_probs=37.5
Q ss_pred cCCHHHHHHHhhccCCeEEEEecCCCcceEEcc--ccCcceEeCC-CCcEEEEEee
Q 013934 379 AIKVEDCGRKCTSDCKCLGYFYHQETSRCWIAY--DLKTLTKFPN-STHVGFIKAP 431 (433)
Q Consensus 379 ~~s~~~C~~~Cl~nCsC~a~~y~~~~~~C~~~~--~L~~l~~~~~-~~~~~yiKv~ 431 (433)
..+.++|.+.|..+..|..+..+. ...|.+.. .+..+++... .+..+=||+.
T Consensus 21 ~~sw~~Ci~~C~~~~~Cvlay~~~-~~~C~~f~~~~~~~v~~~~~~~~~~VAfK~~ 75 (94)
T smart00605 21 TLSWDECIQKCYEDSNCVLAYGNS-SETCYLFSYGTVLTVKKLSSSSGKKVAFKVS 75 (94)
T ss_pred CCCHHHHHHHHhCCCceEEEecCC-CCceEEEEcCCeEEEEEccCCCCcEEEEEEe
Confidence 468999999999999999876543 46898863 4566666543 4455666764
No 19
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=74.72 E-value=18 Score=33.43 Aligned_cols=71 Identities=27% Similarity=0.481 Sum_probs=44.5
Q ss_pred eeEEEEecc----CCcc----ccCcEEEE-cCCCcEEEEec-CCcEEEEeccCCC---c-e---eEEE-EeeCCCeeEee
Q 013934 88 FLWVWEANR----GKPV----RENATFSL-GTDGNLVLAEA-DGTVVWQTNTANK---G-V---VGFK-LLSNGNMVLYD 149 (433)
Q Consensus 88 ~tvVW~ANr----~~Pv----~~~~~l~l-~~~GnLvL~~~-~g~~vWst~~~~~---~-~---~~~~-L~d~GNLVl~~ 149 (433)
...+|..+- ..++ ..+..+.+ +.+|.|+..|. +|+++|+...... . . -.+. ...+|.|+..|
T Consensus 13 G~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d 92 (238)
T PF13360_consen 13 GKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALD 92 (238)
T ss_dssp TEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEE
T ss_pred CCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecc
Confidence 457888753 2333 23344444 58899999996 8999999875322 1 0 0122 22345577777
Q ss_pred -cCceEEEcc
Q 013934 150 -SKGKFIWQS 158 (433)
Q Consensus 150 -~~~~~lWqS 158 (433)
.+|+++|+.
T Consensus 93 ~~tG~~~W~~ 102 (238)
T PF13360_consen 93 AKTGKVLWSI 102 (238)
T ss_dssp TTTSCEEEEE
T ss_pred cCCcceeeee
Confidence 679999995
No 20
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=70.17 E-value=19 Score=36.49 Aligned_cols=49 Identities=27% Similarity=0.648 Sum_probs=28.9
Q ss_pred cCCCcEEEEe-cCCcEEEEeccCCC---ce-----eEEEEeeCCCeeEeec-CceEEEc
Q 013934 109 GTDGNLVLAE-ADGTVVWQTNTANK---GV-----VGFKLLSNGNMVLYDS-KGKFIWQ 157 (433)
Q Consensus 109 ~~~GnLvL~~-~~g~~vWst~~~~~---~~-----~~~~L~d~GNLVl~~~-~~~~lWq 157 (433)
+.+|.|.-.| .+|+++|+.+.... .+ ....-..+|+|+..|. +|+++|+
T Consensus 72 ~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~ 130 (377)
T TIGR03300 72 DADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWR 130 (377)
T ss_pred CCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeee
Confidence 4557777777 47888887664321 11 1112234566776775 5788886
No 21
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.32 E-value=18 Score=35.57 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=34.6
Q ss_pred ceeEEEEeccCCccccC-----cEEEE-cCCCcEEEEecCCcEEEEeccCC
Q 013934 87 LFLWVWEANRGKPVREN-----ATFSL-GTDGNLVLAEADGTVVWQTNTAN 131 (433)
Q Consensus 87 ~~tvVW~ANr~~Pv~~~-----~~l~l-~~~GnLvL~~~~g~~vWst~~~~ 131 (433)
..+..|.|.|..|+-.. +.+.+ +-||+|.-.|..|+.||+-.|.+
T Consensus 168 ~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~G 218 (354)
T KOG4649|consen 168 SSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKG 218 (354)
T ss_pred CcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCC
Confidence 34789999999998653 33444 57999999999999999876543
No 22
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=67.77 E-value=37 Score=31.31 Aligned_cols=71 Identities=23% Similarity=0.490 Sum_probs=45.7
Q ss_pred eeEEEEeccCCccc-----cCcE-EEEcCCCcEEEEe-cCCcEEEEe-ccC----C---Cc-ee----EEEE-eeCCCee
Q 013934 88 FLWVWEANRGKPVR-----ENAT-FSLGTDGNLVLAE-ADGTVVWQT-NTA----N---KG-VV----GFKL-LSNGNMV 146 (433)
Q Consensus 88 ~tvVW~ANr~~Pv~-----~~~~-l~l~~~GnLvL~~-~~g~~vWst-~~~----~---~~-~~----~~~L-~d~GNLV 146 (433)
-+++|...-..++. .... +..+.+|.|...| .+|.++|.. ... . .. .. .+.+ ..+|.|+
T Consensus 56 G~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 135 (238)
T PF13360_consen 56 GKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLV 135 (238)
T ss_dssp SEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEE
T ss_pred CCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEE
Confidence 46899988766533 3344 4445678899899 789999994 322 1 01 10 1233 3388899
Q ss_pred Eee-cCceEEEcc
Q 013934 147 LYD-SKGKFIWQS 158 (433)
Q Consensus 147 l~~-~~~~~lWqS 158 (433)
.+| .+|+++|+-
T Consensus 136 ~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 136 ALDPKTGKLLWKY 148 (238)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEecCCCcEEEEe
Confidence 999 569999984
No 23
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=67.20 E-value=17 Score=37.29 Aligned_cols=57 Identities=26% Similarity=0.462 Sum_probs=37.0
Q ss_pred cCcEEEE-cCCCcEEEEec-CCcEEEEeccCCC----ce----eEEEEeeCCCeeEeec-CceEEEcc
Q 013934 102 ENATFSL-GTDGNLVLAEA-DGTVVWQTNTANK----GV----VGFKLLSNGNMVLYDS-KGKFIWQS 158 (433)
Q Consensus 102 ~~~~l~l-~~~GnLvL~~~-~g~~vWst~~~~~----~~----~~~~L~d~GNLVl~~~-~~~~lWqS 158 (433)
.+..+.+ +.+|.|+-.|. +|+++|+....+. .+ ....-..+|.|+-+|. +|+++|+-
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTV 186 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 3344445 46788888886 7999999876431 11 1122345677888885 69999984
No 24
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=63.15 E-value=7.2 Score=24.48 Aligned_cols=30 Identities=23% Similarity=0.506 Sum_probs=20.5
Q ss_pred CCcccCCCCCcccCCC-CCCCCCCCCCCCCC
Q 013934 313 CQLPERCGKFGLCDEN-QCVACPTEKGLLGW 342 (433)
Q Consensus 313 C~~~g~CG~~giC~~~-~~~~C~c~~g~~~~ 342 (433)
|.....|..++.|... ....|.|+.||...
T Consensus 2 C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 2 CAASNPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCCCCCEEecCCCCeEeECCCCCccc
Confidence 4434678888899653 34569999998644
No 25
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=62.20 E-value=26 Score=35.89 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=9.4
Q ss_pred cCCCcEEEEec-CCcEEEEec
Q 013934 109 GTDGNLVLAEA-DGTVVWQTN 128 (433)
Q Consensus 109 ~~~GnLvL~~~-~g~~vWst~ 128 (433)
+.+|.|...|. +|+++|+.+
T Consensus 342 ~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 342 DSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred eCCCEEEEEECCCCCEEEEEE
Confidence 34455544443 445555544
No 26
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=53.80 E-value=44 Score=35.50 Aligned_cols=71 Identities=24% Similarity=0.478 Sum_probs=44.9
Q ss_pred eeEEEEeccC-------CccccCcEEEE-cCCCcEEEEec-CCcEEEEeccCCC-----------ce------eEEEEee
Q 013934 88 FLWVWEANRG-------KPVRENATFSL-GTDGNLVLAEA-DGTVVWQTNTANK-----------GV------VGFKLLS 141 (433)
Q Consensus 88 ~tvVW~ANr~-------~Pv~~~~~l~l-~~~GnLvL~~~-~g~~vWst~~~~~-----------~~------~~~~L~d 141 (433)
.+++|..+-. .|+-.+.++.+ +.+|.|+-.|. .|+++|+...... ++ ....-..
T Consensus 39 ~~~~W~~~~~~~~~~~~sPvv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~ 118 (488)
T cd00216 39 LKVAWTFSTGDERGQEGTPLVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF 118 (488)
T ss_pred ceeeEEEECCCCCCcccCCEEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC
Confidence 4678887654 36555555555 45799988886 7899999765321 00 0011124
Q ss_pred CCCeeEeec-CceEEEcc
Q 013934 142 NGNMVLYDS-KGKFIWQS 158 (433)
Q Consensus 142 ~GNLVl~~~-~~~~lWqS 158 (433)
+|.++-+|. +|+++|+-
T Consensus 119 ~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 119 DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CCeEEEEECCCCCEeeee
Confidence 677777785 58999983
No 27
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=50.07 E-value=26 Score=21.74 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=15.8
Q ss_pred cEEEEcCCCcEEEEecCCcEEE
Q 013934 104 ATFSLGTDGNLVLAEADGTVVW 125 (433)
Q Consensus 104 ~~l~l~~~GnLvL~~~~g~~vW 125 (433)
.-+.+..+|+|++.|....-||
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEE
Confidence 3466778888888887666555
No 28
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=47.45 E-value=29 Score=28.46 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=22.9
Q ss_pred eeEEEEeccCCccccCcEEEEcCCCcEEEEe
Q 013934 88 FLWVWEANRGKPVRENATFSLGTDGNLVLAE 118 (433)
Q Consensus 88 ~tvVW~ANr~~Pv~~~~~l~l~~~GnLvL~~ 118 (433)
.++.|+-+....+.....+.++.+|||.+.+
T Consensus 34 P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~ 64 (95)
T cd05845 34 LRIYWMNSDLLHITQDERVSMGQNGNLYFAN 64 (95)
T ss_pred CEEEEECCCCccccccccEEECCCceEEEEE
Confidence 4788995554556656778888889999864
No 29
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=47.03 E-value=93 Score=31.35 Aligned_cols=70 Identities=14% Similarity=0.407 Sum_probs=44.6
Q ss_pred eEEEEeccCC-----ccccCcEEEE-cCCCcEEEEec-CCcEEEEeccCCC----ce----eEEEEeeCCCeeEeec-Cc
Q 013934 89 LWVWEANRGK-----PVRENATFSL-GTDGNLVLAEA-DGTVVWQTNTANK----GV----VGFKLLSNGNMVLYDS-KG 152 (433)
Q Consensus 89 tvVW~ANr~~-----Pv~~~~~l~l-~~~GnLvL~~~-~g~~vWst~~~~~----~~----~~~~L~d~GNLVl~~~-~~ 152 (433)
+++|..+-.. |+-++..+.+ +.+|.|+..|. +|.++|+....+. .. ....-..+|.|+..|. +|
T Consensus 86 ~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG 165 (377)
T TIGR03300 86 KRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATG 165 (377)
T ss_pred cEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCC
Confidence 5788755443 3333445545 56899998897 7999998765321 11 1122245677888885 68
Q ss_pred eEEEcc
Q 013934 153 KFIWQS 158 (433)
Q Consensus 153 ~~lWqS 158 (433)
+++|+-
T Consensus 166 ~~~W~~ 171 (377)
T TIGR03300 166 ERLWTY 171 (377)
T ss_pred ceeeEE
Confidence 999983
No 30
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=45.82 E-value=71 Score=33.99 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=26.6
Q ss_pred eEEEEeccCCccccCcEEEEcCCCcE--------EEEecCCcEEEEeccCCCc---eeEEEEeeCCCeeEe
Q 013934 89 LWVWEANRGKPVRENATFSLGTDGNL--------VLAEADGTVVWQTNTANKG---VVGFKLLSNGNMVLY 148 (433)
Q Consensus 89 tvVW~ANr~~Pv~~~~~l~l~~~GnL--------vL~~~~g~~vWst~~~~~~---~~~~~L~d~GNLVl~ 148 (433)
.|+|.-..+...... +.+..+|+| ...|-.|+++|.-...+.. .-.+..+++||++++
T Consensus 138 ~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l 206 (477)
T PF05935_consen 138 DVRWYLPLDSGSDNS--FKQLPNGNLLIGSGNRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLIL 206 (477)
T ss_dssp -EEEEE-GGGT--SS--EEE-TTS-EEEEEBTEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEE
T ss_pred cEEEEEccCccccce--eeEcCCCCEEEecCCceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEE
Confidence 578887665432211 334445554 4567779999986654422 234678899999875
No 31
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=44.98 E-value=52 Score=27.93 Aligned_cols=53 Identities=21% Similarity=0.369 Sum_probs=31.7
Q ss_pred cCcEEEEcCCCcEEEEecCCcE------EEEecc---------CCC---ceeEEEEeeCCCeeEeecCceE
Q 013934 102 ENATFSLGTDGNLVLAEADGTV------VWQTNT---------ANK---GVVGFKLLSNGNMVLYDSKGKF 154 (433)
Q Consensus 102 ~~~~l~l~~~GnLvL~~~~g~~------vWst~~---------~~~---~~~~~~L~d~GNLVl~~~~~~~ 154 (433)
....|.|..||.|+|+..++.- -|+-.. .+. .-+...=+++|-|||.|++|+.
T Consensus 34 ~~~~leF~~dGKL~v~~gnng~~~~~~Gty~L~G~kLtL~~~p~g~t~k~~Vtv~~l~~~~Lvl~d~dg~~ 104 (111)
T TIGR03066 34 DDVVIEFAKDGKLVVTIGEKGKEVKADGTYKLDGNKLTLTLKAGGKEKKETLTVKKLTDDELVGKDPDGKK 104 (111)
T ss_pred CceEEEEcCCCeEEEecCCCCcEeccCceEEEECCEEEEEEcCCCccccceEEEEEecCCeEEEEcCCCCE
Confidence 4578999999999987664322 133211 111 1111234678899999988764
No 32
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=42.51 E-value=26 Score=34.19 Aligned_cols=32 Identities=22% Similarity=0.540 Sum_probs=28.8
Q ss_pred eeEEEEeccCCccccCcEEEEcCCCcEEEEec
Q 013934 88 FLWVWEANRGKPVRENATFSLGTDGNLVLAEA 119 (433)
Q Consensus 88 ~tvVW~ANr~~Pv~~~~~l~l~~~GnLvL~~~ 119 (433)
++..|+-..++++++++.++|++.|.|++.|=
T Consensus 13 P~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F 44 (271)
T PF07354_consen 13 PTYLWTGPNGKPLSGNSYVNITETGKLMFKNF 44 (271)
T ss_pred CceEEECCCCcccCCCCeEEEccCceEEeecc
Confidence 46899999999999999999999999999764
No 33
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=41.79 E-value=1.2e+02 Score=30.78 Aligned_cols=73 Identities=27% Similarity=0.475 Sum_probs=45.5
Q ss_pred ceeEEEEeccCC-c------cccCcEEEEc-CCCcEEEEecC-CcEEEEeccCC---C----cee----EEEE-ee--CC
Q 013934 87 LFLWVWEANRGK-P------VRENATFSLG-TDGNLVLAEAD-GTVVWQTNTAN---K----GVV----GFKL-LS--NG 143 (433)
Q Consensus 87 ~~tvVW~ANr~~-P------v~~~~~l~l~-~~GnLvL~~~~-g~~vWst~~~~---~----~~~----~~~L-~d--~G 143 (433)
+-+.+|..+... | +....++.+. .+|.|+-.|++ |+.+|...... . .+. .+.+ .+ +|
T Consensus 130 ~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~ 209 (370)
T COG1520 130 TGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDG 209 (370)
T ss_pred CCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcc
Confidence 346899988777 2 3334555555 68999988886 99999955421 1 000 1111 22 45
Q ss_pred CeeEeec-CceEEEccc
Q 013934 144 NMVLYDS-KGKFIWQSF 159 (433)
Q Consensus 144 NLVl~~~-~~~~lWqSF 159 (433)
+|+-.|. +|..+|+.+
T Consensus 210 ~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 210 ILYALNAEDGTLKWSQK 226 (370)
T ss_pred eEEEEEccCCcEeeeee
Confidence 6776675 788999853
No 34
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=41.05 E-value=7.1 Score=26.75 Aligned_cols=30 Identities=23% Similarity=0.550 Sum_probs=23.1
Q ss_pred CCCCccc-CCCCCcccCC-CCCCCCCCCCCCC
Q 013934 311 NECQLPE-RCGKFGLCDE-NQCVACPTEKGLL 340 (433)
Q Consensus 311 ~~C~~~g-~CG~~giC~~-~~~~~C~c~~g~~ 340 (433)
|+|.... .|..++.|.. .....|.|++||.
T Consensus 3 dEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp STTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred cccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 7898854 8999999965 3445699999985
No 35
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=40.49 E-value=30 Score=22.29 Aligned_cols=30 Identities=23% Similarity=0.522 Sum_probs=21.3
Q ss_pred CCCCcccCCCCCcccCCC-CCCCCCCCCCCC
Q 013934 311 NECQLPERCGKFGLCDEN-QCVACPTEKGLL 340 (433)
Q Consensus 311 ~~C~~~g~CG~~giC~~~-~~~~C~c~~g~~ 340 (433)
++|.....|...+.|... ....|.|++||.
T Consensus 3 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred ccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 677665678888899643 334599998875
No 36
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=38.26 E-value=28 Score=24.77 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=23.8
Q ss_pred CCCCCCcccCCCCCcccCCCCCCCCCCCCCCCC
Q 013934 309 WENECQLPERCGKFGLCDENQCVACPTEKGLLG 341 (433)
Q Consensus 309 P~~~C~~~g~CG~~giC~~~~~~~C~c~~g~~~ 341 (433)
|-+.|.....|-.+++|..+ .|.|++|+..
T Consensus 18 ~g~~C~~~~qC~~~s~C~~g---~C~C~~g~~~ 47 (52)
T PF01683_consen 18 PGESCESDEQCIGGSVCVNG---RCQCPPGYVE 47 (52)
T ss_pred CCCCCCCcCCCCCcCEEcCC---EeECCCCCEe
Confidence 56789999999999999654 4788888643
No 37
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=37.24 E-value=43 Score=22.23 Aligned_cols=8 Identities=25% Similarity=0.896 Sum_probs=3.1
Q ss_pred EEEeccCC
Q 013934 91 VWEANRGK 98 (433)
Q Consensus 91 VW~ANr~~ 98 (433)
+|......
T Consensus 4 ~W~~~~~~ 11 (40)
T PF13570_consen 4 LWSYDTGG 11 (40)
T ss_dssp EEEEE-SS
T ss_pred eEEEECCC
Confidence 44444433
No 38
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=36.15 E-value=33 Score=36.47 Aligned_cols=53 Identities=32% Similarity=0.594 Sum_probs=31.2
Q ss_pred CCcEEEEecCCcEEEEeccCCCceeEEEEeeCCCeeEe--------ecCceEEEcccCCCCc
Q 013934 111 DGNLVLAEADGTVVWQTNTANKGVVGFKLLSNGNMVLY--------DSKGKFIWQSFDYPTD 164 (433)
Q Consensus 111 ~GnLvL~~~~g~~vWst~~~~~~~~~~~L~d~GNLVl~--------~~~~~~lWqSFD~PTD 164 (433)
.+..++.|.+|.++|...........+..+++|+|... |-.|+++|+ ++.|..
T Consensus 127 ~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~~~~~e~D~~G~v~~~-~~l~~~ 187 (477)
T PF05935_consen 127 SSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSGNRLYEIDLLGKVIWE-YDLPGG 187 (477)
T ss_dssp EEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEBTEEEEE-TT--EEEE-EE--TT
T ss_pred CceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecCCceEEEcCCCCEEEe-eecCCc
Confidence 46788999999999987654322222678999999864 345899999 777663
No 39
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=36.06 E-value=21 Score=29.43 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=11.1
Q ss_pred CCccchhHHHHHHHHHhh
Q 013934 1 MSSSSAISFSFFLLSSFL 18 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (433)
|.+-.+|||.+||.++|+
T Consensus 1 MaSK~~llL~l~LA~lLl 18 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLL 18 (95)
T ss_pred CchhHHHHHHHHHHHHHH
Confidence 665556777666655544
No 40
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=31.60 E-value=47 Score=20.87 Aligned_cols=30 Identities=23% Similarity=0.532 Sum_probs=20.5
Q ss_pred CCCCcccCCCCCcccCCC-CCCCCCCCCCCC
Q 013934 311 NECQLPERCGKFGLCDEN-QCVACPTEKGLL 340 (433)
Q Consensus 311 ~~C~~~g~CG~~giC~~~-~~~~C~c~~g~~ 340 (433)
++|.....|...+.|... ....|.|++||.
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~ 33 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYT 33 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 567654568878889643 234599988875
No 41
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=31.35 E-value=1.8e+02 Score=22.02 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=21.9
Q ss_pred eeEEEEeccCCccccCcEEEEcCCCcEEEEec
Q 013934 88 FLWVWEANRGKPVRENATFSLGTDGNLVLAEA 119 (433)
Q Consensus 88 ~tvVW~ANr~~Pv~~~~~l~l~~~GnLvL~~~ 119 (433)
+++.|.-|. .++..+..+.+..+|.|+|.+.
T Consensus 16 p~v~W~k~~-~~l~~~~r~~~~~~g~L~I~~v 46 (73)
T cd05852 16 PKFSWSKGT-ELLVNNSRISIWDDGSLEILNI 46 (73)
T ss_pred CEEEEEeCC-EecccCCCEEEcCCCEEEECcC
Confidence 478998654 3555556777777899988654
No 42
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=30.71 E-value=2.4e+02 Score=30.44 Aligned_cols=70 Identities=19% Similarity=0.436 Sum_probs=42.8
Q ss_pred eEEEEeccC-------CccccCcEEEE-cCCCcEEEEec-CCcEEEEeccCC--------------Ccee----EEEE-e
Q 013934 89 LWVWEANRG-------KPVRENATFSL-GTDGNLVLAEA-DGTVVWQTNTAN--------------KGVV----GFKL-L 140 (433)
Q Consensus 89 tvVW~ANr~-------~Pv~~~~~l~l-~~~GnLvL~~~-~g~~vWst~~~~--------------~~~~----~~~L-~ 140 (433)
.++|...-. .|+-.+.+|.+ +.+|.|+=+|. .|+++|+..... ++++ .+.+ .
T Consensus 48 ~~~W~~~~g~~~g~~stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t 127 (527)
T TIGR03075 48 QPAWTFSLGKLRGQESQPLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT 127 (527)
T ss_pred eEEEEEECCCCCCcccCCEEECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc
Confidence 466765443 35555566666 45688877786 689999876421 1111 0111 2
Q ss_pred eCCCeeEeec-CceEEEcc
Q 013934 141 SNGNMVLYDS-KGKFIWQS 158 (433)
Q Consensus 141 d~GNLVl~~~-~~~~lWqS 158 (433)
-+|.|+-+|. +|+++|+-
T Consensus 128 ~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 128 LDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCCEEEEEECCCCCEEeec
Confidence 3577777776 69999984
No 43
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=28.76 E-value=51 Score=25.49 Aligned_cols=17 Identities=24% Similarity=1.060 Sum_probs=8.2
Q ss_pred eeEeecCceEEEcccCC
Q 013934 145 MVLYDSKGKFIWQSFDY 161 (433)
Q Consensus 145 LVl~~~~~~~lWqSFD~ 161 (433)
||++|.+|..+|..|.+
T Consensus 35 lvvRd~~g~mvWRaWNF 51 (70)
T PF06006_consen 35 LVVRDTEGQMVWRAWNF 51 (70)
T ss_dssp EEEE-SS--EEEEEESS
T ss_pred EEEEcCCCcEEEEeecc
Confidence 45666666666665544
No 44
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=28.08 E-value=2e+02 Score=32.44 Aligned_cols=53 Identities=34% Similarity=0.743 Sum_probs=40.4
Q ss_pred cEEEEcCCCcEEEEec-CCcE-EEEeccC---------CCceeEEEEeeCCCeeEeec-CceE-EE
Q 013934 104 ATFSLGTDGNLVLAEA-DGTV-VWQTNTA---------NKGVVGFKLLSNGNMVLYDS-KGKF-IW 156 (433)
Q Consensus 104 ~~l~l~~~GnLvL~~~-~g~~-vWst~~~---------~~~~~~~~L~d~GNLVl~~~-~~~~-lW 156 (433)
..+....||.++.+.+ ||.+ ||.+... ..+|+..+..-+||.+|-.+ +|++ .|
T Consensus 354 ~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw 419 (893)
T KOG0291|consen 354 TSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW 419 (893)
T ss_pred eeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence 5688899999999866 5666 9988741 34678889999999999754 5654 45
No 45
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=28.05 E-value=90 Score=20.54 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=17.8
Q ss_pred cCCCcEEEEec-CCcEEEEeccC
Q 013934 109 GTDGNLVLAEA-DGTVVWQTNTA 130 (433)
Q Consensus 109 ~~~GnLvL~~~-~g~~vWst~~~ 130 (433)
+.+|.|+-+|. .|..+|+-++.
T Consensus 7 ~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 7 TPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp TTTSEEEEEETTTTSEEEEEESS
T ss_pred CCCCEEEEEECCCCCEEEeeeCC
Confidence 67888888886 68899988764
No 46
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=27.46 E-value=6.2e+02 Score=25.10 Aligned_cols=11 Identities=36% Similarity=0.661 Sum_probs=7.0
Q ss_pred EEEeeCCCeeE
Q 013934 137 FKLLSNGNMVL 147 (433)
Q Consensus 137 ~~L~d~GNLVl 147 (433)
+++|++||..+
T Consensus 265 ~Q~L~nGn~li 275 (299)
T PF14269_consen 265 AQRLPNGNVLI 275 (299)
T ss_pred ceECCCCCEEE
Confidence 56666666665
No 47
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=25.86 E-value=1.9e+02 Score=30.10 Aligned_cols=48 Identities=19% Similarity=0.366 Sum_probs=28.0
Q ss_pred CCCcEEEEecCCcEEEEeccCC--CceeEEEEeeCCCeeEeecCceEEEc
Q 013934 110 TDGNLVLAEADGTVVWQTNTAN--KGVVGFKLLSNGNMVLYDSKGKFIWQ 157 (433)
Q Consensus 110 ~~GnLvL~~~~g~~vWst~~~~--~~~~~~~L~d~GNLVl~~~~~~~lWq 157 (433)
..|++++.+.+|...|...... .....+...++|.++|....|.++|.
T Consensus 257 ~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S 306 (398)
T PLN00033 257 SRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVS 306 (398)
T ss_pred CCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEe
Confidence 3344444444555556643322 22344566788999998877776653
No 48
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=25.12 E-value=1.4e+02 Score=18.33 Aligned_cols=17 Identities=41% Similarity=0.892 Sum_probs=9.3
Q ss_pred CCCcEEEEec-CCcEEEE
Q 013934 110 TDGNLVLAEA-DGTVVWQ 126 (433)
Q Consensus 110 ~~GnLvL~~~-~g~~vWs 126 (433)
.+|.|+-.|. +|.++|+
T Consensus 14 ~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 14 TDGTLYALDAKTGEILWT 31 (33)
T ss_pred CCCEEEEEEcccCcEEEE
Confidence 3455555555 5556664
No 49
>PHA02887 EGF-like protein; Provisional
Probab=23.15 E-value=75 Score=27.24 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=21.2
Q ss_pred CCCC--cccCCCCCcccCC---CCCCCCCCCCCCC
Q 013934 311 NECQ--LPERCGKFGLCDE---NQCVACPTEKGLL 340 (433)
Q Consensus 311 ~~C~--~~g~CG~~giC~~---~~~~~C~c~~g~~ 340 (433)
++|. +.++|= +|.|.. -+.+.|.|++||.
T Consensus 84 ~pC~~eyk~YCi-HG~C~yI~dL~epsCrC~~GYt 117 (126)
T PHA02887 84 EKCKNDFNDFCI-NGECMNIIDLDEKFCICNKGYT 117 (126)
T ss_pred cccChHhhCEee-CCEEEccccCCCceeECCCCcc
Confidence 5676 466787 789965 2457899999985
No 50
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=22.83 E-value=3e+02 Score=27.84 Aligned_cols=66 Identities=20% Similarity=0.413 Sum_probs=45.4
Q ss_pred EEeccCCccccC-cEEEEcCCCcEEEEec-CCcE-EEEecc-----------CCCceeEEEEeeCCCeeEeecC-c-eEE
Q 013934 92 WEANRGKPVREN-ATFSLGTDGNLVLAEA-DGTV-VWQTNT-----------ANKGVVGFKLLSNGNMVLYDSK-G-KFI 155 (433)
Q Consensus 92 W~ANr~~Pv~~~-~~l~l~~~GnLvL~~~-~g~~-vWst~~-----------~~~~~~~~~L~d~GNLVl~~~~-~-~~l 155 (433)
=.||.++-+++. ..+..+..|+|.++.+ ||.+ +|.--. .+..+..|+...+|..+|.... + .-|
T Consensus 252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkL 331 (430)
T KOG0640|consen 252 VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKL 331 (430)
T ss_pred eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeee
Confidence 357777766664 4588888999999755 6665 785221 1234678999999999997543 3 247
Q ss_pred Ec
Q 013934 156 WQ 157 (433)
Q Consensus 156 Wq 157 (433)
|+
T Consensus 332 WE 333 (430)
T KOG0640|consen 332 WE 333 (430)
T ss_pred ee
Confidence 86
No 51
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=21.80 E-value=65 Score=20.89 Aligned_cols=23 Identities=26% Similarity=0.686 Sum_probs=16.5
Q ss_pred cCCCCCcccCCCCCCCCCCCCCCC
Q 013934 317 ERCGKFGLCDENQCVACPTEKGLL 340 (433)
Q Consensus 317 g~CG~~giC~~~~~~~C~c~~g~~ 340 (433)
..|...|.|... .-.|.|.+||.
T Consensus 6 ~~C~~~G~C~~~-~g~C~C~~g~~ 28 (32)
T PF07974_consen 6 NICSGHGTCVSP-CGRCVCDSGYT 28 (32)
T ss_pred CccCCCCEEeCC-CCEEECCCCCc
Confidence 468888999754 23588888864
No 52
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=21.73 E-value=1.6e+02 Score=29.70 Aligned_cols=55 Identities=27% Similarity=0.579 Sum_probs=37.5
Q ss_pred CcEEEEc-CCCcEEEEec-CCcEEEEeccCC-----Ccee---E-EEEe-eCCCeeEeecC-ceEEEc
Q 013934 103 NATFSLG-TDGNLVLAEA-DGTVVWQTNTAN-----KGVV---G-FKLL-SNGNMVLYDSK-GKFIWQ 157 (433)
Q Consensus 103 ~~~l~l~-~~GnLvL~~~-~g~~vWst~~~~-----~~~~---~-~~L~-d~GNLVl~~~~-~~~lWq 157 (433)
.+++.+. .+|.|.-+|. +|+.+|+.+..+ .+.+ . .... ++|.++-.+++ |+.+|+
T Consensus 111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 3566554 5676777888 899999988765 1111 1 1222 57999888876 999998
No 53
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=21.68 E-value=2.7e+02 Score=29.29 Aligned_cols=58 Identities=29% Similarity=0.405 Sum_probs=35.3
Q ss_pred ceEEEeCCCc-EEEEEEeCCCCCeEEEEEEceecCCCceeEEEEeccCCccccCcEEEEcCCCcEEEEecC
Q 013934 51 YRMLSIFNSP-FQLAFYNTTPNAYTLALRLGLQRNEPLFLWVWEANRGKPVRENATFSLGTDGNLVLAEAD 120 (433)
Q Consensus 51 ~~~l~s~~g~-F~lGF~~~~~~~~~l~Iw~~~~~~~~~~tvVW~ANr~~Pv~~~~~l~l~~~GnLvL~~~~ 120 (433)
.|.+.||||. +-.-||++..+.|.| +-|+.+..+ =.+|+...+ ..|-.||.|++..+.
T Consensus 310 ~r~vrSPNGEDvLYvF~~~~~g~~~L-l~YN~I~k~----------v~tPi~chG-~alf~DG~l~~fra~ 368 (448)
T PF12458_consen 310 ERKVRSPNGEDVLYVFYAREEGRYLL-LPYNLIRKE----------VATPIICHG-YALFEDGRLVYFRAE 368 (448)
T ss_pred EEEecCCCCceEEEEEEECCCCcEEE-Eechhhhhh----------hcCCeeccc-eeEecCCEEEEEecC
Confidence 5667788876 666778776666533 446655321 134766544 234568888887665
No 54
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=21.34 E-value=81 Score=22.17 Aligned_cols=15 Identities=13% Similarity=0.415 Sum_probs=7.9
Q ss_pred EEeeCCCeeEeecCc
Q 013934 138 KLLSNGNMVLYDSKG 152 (433)
Q Consensus 138 ~L~d~GNLVl~~~~~ 152 (433)
-+.++|.|+|+..++
T Consensus 21 gId~~G~L~v~~~~g 35 (48)
T PF02237_consen 21 GIDDDGALLVRTEDG 35 (48)
T ss_dssp EEETTSEEEEEETTE
T ss_pred EECCCCEEEEEECCC
Confidence 345555555555554
No 55
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=21.27 E-value=5.7e+02 Score=25.32 Aligned_cols=45 Identities=20% Similarity=0.555 Sum_probs=27.8
Q ss_pred EEEcCCCcEEE----------Ee-cCCcEEEEeccC-CC----------ceeEEEEe----eCCCeeEeec
Q 013934 106 FSLGTDGNLVL----------AE-ADGTVVWQTNTA-NK----------GVVGFKLL----SNGNMVLYDS 150 (433)
Q Consensus 106 l~l~~~GnLvL----------~~-~~g~~vWst~~~-~~----------~~~~~~L~----d~GNLVl~~~ 150 (433)
+....+|+++| .| .+|.++|..... +. ..-.|+++ ++|++-|.|.
T Consensus 149 V~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 149 VDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 45556777654 34 468899987533 10 01236677 7888888876
No 56
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=20.84 E-value=2.7e+02 Score=29.54 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=27.4
Q ss_pred cEEEE-cCCCcEEEEec-CCcEEEEeccCCCceeE-EEEeeCCCeeEeec
Q 013934 104 ATFSL-GTDGNLVLAEA-DGTVVWQTNTANKGVVG-FKLLSNGNMVLYDS 150 (433)
Q Consensus 104 ~~l~l-~~~GnLvL~~~-~g~~vWst~~~~~~~~~-~~L~d~GNLVl~~~ 150 (433)
..|.+ +.||.|..+|. +|+++|+.+..+.-.+. +....+|.+++...
T Consensus 407 ~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~ 456 (488)
T cd00216 407 NLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGVM 456 (488)
T ss_pred CeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEEE
Confidence 34444 56788888776 68888887763321111 22244677766543
No 57
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=20.00 E-value=4.8e+02 Score=29.72 Aligned_cols=42 Identities=19% Similarity=0.478 Sum_probs=28.3
Q ss_pred eeEEEEeccC---------------CccccCcEEEEc-CCCcEEEEec-CCcEEEEecc
Q 013934 88 FLWVWEANRG---------------KPVRENATFSLG-TDGNLVLAEA-DGTVVWQTNT 129 (433)
Q Consensus 88 ~tvVW~ANr~---------------~Pv~~~~~l~l~-~~GnLvL~~~-~g~~vWst~~ 129 (433)
..++|+.... .|+-.+.+|.+. .+|.++=+|+ .|+.+|+...
T Consensus 164 L~~aWt~~tGd~~~~~~~~~~~~e~TPlvvgg~lYv~t~~~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 164 LKVAWTYHTGDLKTPDDPGEATFQATPLKVGDTLYLCTPHNKVIALDAATGKEKWKFDP 222 (764)
T ss_pred ceEEEEEECCCccccccccccccccCCEEECCEEEEECCCCeEEEEECCCCcEEEEEcC
Confidence 4678887443 355555666664 4577777786 5899999764
Done!