BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013936
(433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZP|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZQ|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
pdb|3AZQ|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
Length = 662
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 326 VLGKFETVDAYYRHSSSANFVRNVSVPLLCISTLDDPVCTRE 367
++G FE YR + V VP L + L+DPVC E
Sbjct: 558 LIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPE 599
>pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase
pdb|3AZO|B Chain B, Crystal Structure Of Puromycin Hydrolase
Length = 662
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 326 VLGKFETVDAYYRHSSSANFVRNVSVPLLCISTLDDPVCTRE 367
++G FE YR + V VP L + L+DPVC E
Sbjct: 558 LIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPE 599
>pdb|2WPN|A Chain A, Structure Of The Oxidised, As-Isolated Nifese Hydrogenase
From D. Vulgaris Hildenborough
Length = 317
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 231 AVGTSIGANILVKYLGENGVNTPLV 255
A G+ GA + K+LG+NG+ TP+V
Sbjct: 164 AEGSETGATAVSKFLGDNGIKTPVV 188
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 178 KMAGHGWNVVVSNHRGLGGISLTSDCFYNGGWTEDLRRVIDYLHCQYPEVPLYAVGTSIG 237
++ G+ V+ + RG GG S + + + DL V++ L + + VG S+G
Sbjct: 45 ELLAQGYRVITYDRRGFGGSSKVNTGYDYDTFAADLHTVLETLDLR----DVVLVGFSMG 100
Query: 238 ANILVKYLGENGVNTPLVGAAAICSPWDLLICDRFINRRLV-QKCYDRVIA 287
L +Y+ G V A + + + R N V Q+ +D + A
Sbjct: 101 TGELARYVARYGHER--VAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEA 149
>pdb|3AI7|A Chain A, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|B Chain B, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|C Chain C, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|D Chain D, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|E Chain E, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|F Chain F, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|G Chain G, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|H Chain H, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
Length = 831
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 172 IKHLAFKMAGHGWNVVVSNHRGLGGISLTSDCFYNGGWTEDLRRV 216
I H+ +A HG N V+ G GG + TS + +G +TE ++
Sbjct: 75 IGHINRFIADHGQNTVIIMGPGHGGPAGTSQSYLDGTYTETFPKI 119
>pdb|1YIQ|A Chain A, Molecular Cloning And Structural Analysis Of
Quinohemoprotein Alcohol Dehydrogenase Adhiig From
Pseudomonas Putida Hk5. Compariison To The Other
Quinohemoprotein Alcohol Dehydrogenase Adhiib Found In
The Same Microorganism
Length = 689
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 67 SASSKLYQSLAAKCHVLH---GRYLPTPWLSSPHLQTAFLT--FFGRAPD 111
A +KLY ++CH +H G LP +P FL F GR PD
Sbjct: 596 EAGAKLYDGYCSQCHGIHAVSGGVLPDLRKLTPEKHQMFLGILFGGRVPD 645
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,561,149
Number of Sequences: 62578
Number of extensions: 517340
Number of successful extensions: 955
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 951
Number of HSP's gapped (non-prelim): 8
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)