BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013937
(433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 81 VILLHYVTEKHEWVFFFSLLGITPLAERLGFATEQLAFYTGPTVGGLLNATFGNATEMII 140
VIL+ V++ E F + P E+ A + + +G G + F ATE +
Sbjct: 77 VILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAV--VFTGATEDRV 134
Query: 141 SIYALNNGMIRVVQQSLLGSILSNML--LVLGCSFFIGGII 179
++YAL+ G +R + + +S++ L+ G FF GG +
Sbjct: 135 ALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRV 175
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 81 VILLHYVTEKHEWVFFFSLLGITPLAERLGFATEQLAFYTGPTVGGLLNATFGNATEMII 140
VIL+ V++ E F + P E+ A + + +G G + F ATE +
Sbjct: 57 VILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAV--VFTGATEDRV 114
Query: 141 SIYALNNGMIRVVQQSLLGSILSNML--LVLGCSFFIGGII 179
++YAL+ G +R + + +S++ L+ G FF GG +
Sbjct: 115 ALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRV 155
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 81 VILLHYVTEKHEWVFFFSLLGITPLAERLGFATEQLAFYTGPTVGGLLNATFGNATEMII 140
VIL+ V++ E F + P E+ A + + +G G + F ATE +
Sbjct: 77 VILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAV--VFTGATEDRV 134
Query: 141 SIYALNNGMIRVVQQSLLGSILSNML--LVLGCSFFIGGII 179
++YAL+ G +R + + +S++ L+ G FF GG +
Sbjct: 135 ALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRV 175
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 81 VILLHYVTEKHEWVFFFSLLGITPLAERLGFATEQLAFYTGPTVGGLLNATFGNATEMII 140
VIL+ V++ E F + P E+ A + + +G G + F ATE +
Sbjct: 77 VILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAV--VFTGATEDRV 134
Query: 141 SIYALNNGMIRVVQQSLLGSILSNML--LVLGCSFFIGGII 179
++YAL+ G +R + + +S++ L+ G FF GG +
Sbjct: 135 ALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRV 175
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 81 VILLHYVTEKHEWVFFFSLLGITPLAERLGFATEQLAFYTGPTVGGLLNATFGNATEMII 140
VIL+ V++ E F + P E+ A + + +G G + F ATE +
Sbjct: 77 VILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAV--VFTGATEDRV 134
Query: 141 SIYALNNGMIRVVQQSLLGSILSNML--LVLGCSFFIGGII 179
++YAL+ G +R + + +S++ L+ G FF GG +
Sbjct: 135 ALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRV 175
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 81 VILLHYVTEKHEWVFFFSLLGITPLAERLGFATEQLAFYTGPTVGGLLNATFGNATEMII 140
VIL+ V++ E F + P E+ A + + +G G + F ATE +
Sbjct: 77 VILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAV--VFTGATEDRV 134
Query: 141 SIYALNNGMIRVVQQSLLGSILSNML--LVLGCSFFIGGII 179
++YAL+ G +R + + +S++ L+ G FF GG +
Sbjct: 135 ALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRV 175
>pdb|3K17|A Chain A, Crystal Structure Of A Lin0012 Protein From Listeria
Innocua
pdb|3K17|B Chain B, Crystal Structure Of A Lin0012 Protein From Listeria
Innocua
pdb|3K17|C Chain C, Crystal Structure Of A Lin0012 Protein From Listeria
Innocua
pdb|3K17|D Chain D, Crystal Structure Of A Lin0012 Protein From Listeria
Innocua
Length = 365
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 19 PFSSTPVMRKVHAFDSETTHAYPHADMANSRVFKQI 54
P S+ ++ ++HAF E + Y H N+ + KQI
Sbjct: 223 PVSTGKLVSQIHAFKQEDSKNYQHFLTRNNEIXKQI 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,257,748
Number of Sequences: 62578
Number of extensions: 397429
Number of successful extensions: 1254
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1253
Number of HSP's gapped (non-prelim): 7
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)