Query 013937
Match_columns 433
No_of_seqs 311 out of 2124
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 19:53:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 100.0 4.9E-48 1.7E-52 383.0 27.2 293 92-425 6-302 (320)
2 3v5u_A Uncharacterized membran 99.8 7.9E-20 2.7E-24 180.9 17.0 142 280-427 4-146 (320)
3 2oar_A Large-conductance mecha 26.5 38 0.0013 29.7 2.8 32 337-368 31-69 (174)
4 1pw4_A Glycerol-3-phosphate tr 14.3 7.4E+02 0.025 23.0 14.5 33 302-336 274-307 (451)
5 3llb_A Uncharacterized protein 12.7 1.1E+02 0.0039 22.7 2.4 16 122-137 36-51 (83)
6 3lae_A UPF0053 protein HI0107; 12.6 1.1E+02 0.0038 22.7 2.3 16 122-137 36-51 (81)
7 2rk5_A Putative hemolysin; str 10.0 1.6E+02 0.0054 22.1 2.4 16 122-137 35-50 (87)
8 2kdc_A Diacylglycerol kinase; 8.9 6E+02 0.021 20.5 5.7 49 71-121 35-83 (121)
9 3hzq_A Large-conductance mecha 8.4 5.8E+02 0.02 20.5 5.3 60 339-400 31-101 (114)
10 2r2z_A Hemolysin; APC85144, en 8.3 2E+02 0.0068 21.7 2.4 25 113-137 26-58 (93)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=100.00 E-value=4.9e-48 Score=383.05 Aligned_cols=293 Identities=18% Similarity=0.179 Sum_probs=243.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhhHHHHhhc-chhhHHHHHHHhccCCceeeeecchhHHHHHHHHH
Q 013937 92 EWVFFFSLLGITPLAERLGFATEQLAFYTG--PTVGGLLNATFG-NATEMIISIYALNNGMIRVVQQSLLGSILSNMLLV 168 (433)
Q Consensus 92 ~~iF~~~~l~ii~la~~l~~~~e~la~~~g--~~vgGll~a~~g-n~pELiisi~Al~~g~~~i~~gsilGS~l~nllLv 168 (433)
...|+.+++.+++.++++++++|++|+++| |.+.|++++++| |+||+++++.|..+|++|+++||++|||++|++++
T Consensus 6 ~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nillv 85 (320)
T 3v5u_A 6 VGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGLV 85 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHHHH
Confidence 456889999999999999999999999998 999999999999 79999999999999999999999999999999999
Q ss_pred HHHHHhhcceeeccceEEEcccchHHHHHHHHHHHHHHHHHHHhhhhccccccCcccccchHHHHHHHHHHHHHHHHHHH
Q 013937 169 LGCSFFIGGIIHHKKVQVFNKASAVVNSGLLLMAVMGIMFPAVLHFTRTEVHFGKSELALSRFSSCVMLIAYASYLFFQL 248 (433)
Q Consensus 169 lG~~~l~gg~~~~~~~~~~~~~~a~~~s~lllla~~~lllp~~~~~~~~~~~~~~~~~~lS~~~siiLl~~Y~~yl~f~l 248 (433)
+|+|.++++++. + +.+ .....++++++. ++++ +. .++ ++|++|++++..|+.|+++++
T Consensus 86 lG~~~li~p~~v-~--~~~-----~~d~~~~l~~~~-~l~~--~~----------~~g-is~~~g~~Ll~~Y~~yl~~~~ 143 (320)
T 3v5u_A 86 LGLSAIISPIIV-D--KNL-----QKNILVYLLFVI-FAAV--IG----------IDG-FSWIDGVVLLILFIIYLRWTV 143 (320)
T ss_dssp HHHHHHHSCBCC-C--HHH-----HHHHHHHHHHHH-HHHH--HT----------TTC-BCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccccc-c--HHH-----HHHHHHHHHHHH-HHHH--HH----------Hcc-cHHHHHHHHHHHHHHHHHHHH
Confidence 999999998754 1 111 222233433332 2222 11 124 999999999999999999999
Q ss_pred HhhhcccCCCCcCCCCCCCCCcccCccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhhhhHHhhhhch
Q 013937 249 KSQVNLYNPFDEERGDGGDSDEEEAPELTQWEAIAWLAILTIWVSLLSGYLVDAIQGASDSWNMPVSFISVILLPIVGNA 328 (433)
Q Consensus 249 ~~h~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~i~~~a~~lv~si~~~~~~~gis~~fiGlill~i~ts~ 328 (433)
++|++. + | +++++++.+.++.+.+++++++++..++++++++++.+++.+|+|+.++|++++|++||+
T Consensus 144 ~~~~~~-----~-----~--~~~~~~~~~~~~~~~~l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iGltlva~gtsl 211 (320)
T 3v5u_A 144 KNGSAE-----I-----E--ENNDKNNPSVVFSLVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSL 211 (320)
T ss_dssp HHTBC-------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTH
T ss_pred Hhcccc-----c-----c--cccccccccHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHhCCchHHHHHHHHHHHhcc
Confidence 988751 1 1 111234567788999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCcccHHHHhhhHHHHHHHHHHHHHHHHhhhcCCcccccchhHHHHHHHHHHHHHHHHHhCCccchHH
Q 013937 329 TEHGSAIMFAMKDKLDITIGVAIGSSTQISMFVIPFCVVVGWFMGQPMDLNFQLFETASLFIAVLVVAFMLQEGTSNYFK 408 (433)
Q Consensus 329 pE~~~ai~aa~~g~~dlaig~~iGS~i~~~l~v~pl~vli~~~~g~~~~l~~~~~~~~~l~~svl~~~~~~~~g~~~~~~ 408 (433)
||+++++.+++||+.|+|+||++|||+||+++++|+..++. |++++ .+|...+..+.+++...++|||++|+|
T Consensus 212 PE~~~sv~aa~~g~~~laig~iiGS~ifn~~~v~g~~~li~-----p~~~~--~~d~~~~l~~~~ll~~~~~~~~i~~~e 284 (320)
T 3v5u_A 212 PELMVSLAAAKRNLGGMVLGNVIGSNIADIGGALAVGSLFM-----HLPAE--NVQMAVLVIMSLLLYLFAKYSKIGRWQ 284 (320)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHHHHHS-----CBCCC--HHHHHHHHHHHHHHHHHHHHSCBSHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHhHHHHHHHHHHHHHHhhc-----cccch--HHHHHHHHHHHHHHHHHHhCCcCcHHH
Confidence 99999999999999999999999999999999999998883 55554 667644433333333467899999999
Q ss_pred HHHHHHHHHH-HHHHHhh
Q 013937 409 GLMLILGYLI-VAASFYV 425 (433)
Q Consensus 409 G~~Ll~~Y~i-~~~~~~~ 425 (433)
|++|+++|++ |+...+.
T Consensus 285 G~~ll~~Y~~~y~~~~~~ 302 (320)
T 3v5u_A 285 GILFLALYIIAIASLRMG 302 (320)
T ss_dssp HHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 9999999999 9987665
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.83 E-value=7.9e-20 Score=180.88 Aligned_cols=142 Identities=15% Similarity=0.199 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhhhhHHhhhhchhHHHHHHHHHHhCCcccHHHHhhhHHHHHHH
Q 013937 280 EAIAWLAILTIWVSLLSGYLVDAIQGASDSWNMPVSFISVILLPIVGNATEHGSAIMFAMKDKLDITIGVAIGSSTQISM 359 (433)
Q Consensus 280 ~~i~~l~~~~~~i~~~a~~lv~si~~~~~~~gis~~fiGlill~i~ts~pE~~~ai~aa~~g~~dlaig~~iGS~i~~~l 359 (433)
..+.+++++++++..++++++++.+.+++++|+|+.++|++++|+|||+||+++++.++++|+.|+++||++|||++|++
T Consensus 4 ~~~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nil 83 (320)
T 3v5u_A 4 LGVGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIG 83 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCcccccch-hHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHhhcc
Q 013937 360 FVIPFCVVVGWFMGQPMDLNFQ-LFETASLFIAVLVVAFMLQEGTSNYFKGLMLILGYLIVAASFYVHV 427 (433)
Q Consensus 360 ~v~pl~vli~~~~g~~~~l~~~-~~~~~~l~~svl~~~~~~~~g~~~~~~G~~Ll~~Y~i~~~~~~~~~ 427 (433)
+++|++.+++ |+..+.. ..+...+.++.++......|| .+|++|++|+++|++|+.+.+...
T Consensus 84 lvlG~~~li~-----p~~v~~~~~~d~~~~l~~~~~l~~~~~~g-is~~~g~~Ll~~Y~~yl~~~~~~~ 146 (320)
T 3v5u_A 84 LVLGLSAIIS-----PIIVDKNLQKNILVYLLFVIFAAVIGIDG-FSWIDGVVLLILFIIYLRWTVKNG 146 (320)
T ss_dssp THHHHHHHHS-----CBCCCHHHHHHHHHHHHHHHHHHHHTTTC-BCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc-----cccccHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999885 3333222 234444444444444556788 999999999999999999887643
No 3
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=26.46 E-value=38 Score=29.67 Aligned_cols=32 Identities=19% Similarity=0.508 Sum_probs=22.3
Q ss_pred HHHhCC-cccHHHHhhhHHHH---HHH---HHHHHHHHH
Q 013937 337 FAMKDK-LDITIGVAIGSSTQ---ISM---FVIPFCVVV 368 (433)
Q Consensus 337 aa~~g~-~dlaig~~iGS~i~---~~l---~v~pl~vli 368 (433)
++.||+ +|+|+|.++|++.. +++ ++.|++.++
T Consensus 31 Fi~RGNViDLAVgVIIGaAF~~IVtSlV~dIImPlIgl~ 69 (174)
T 2oar_A 31 FLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRI 69 (174)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 456666 79999999999752 333 467877654
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=14.32 E-value=7.4e+02 Score=23.05 Aligned_cols=33 Identities=3% Similarity=-0.154 Sum_probs=18.4
Q ss_pred hHHHHHh-hcCCCcchhhhhHHhhhhchhHHHHHHH
Q 013937 302 AIQGASD-SWNMPVSFISVILLPIVGNATEHGSAIM 336 (433)
Q Consensus 302 si~~~~~-~~gis~~fiGlill~i~ts~pE~~~ai~ 336 (433)
......+ ..|.++...|...... .....+..+.
T Consensus 274 ~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~ 307 (451)
T 1pw4_A 274 WSPTYLKEVKHFALDKSSWAYFLY--EYAGIPGTLL 307 (451)
T ss_dssp HHHHHBTTBSCCCHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHH--HHHHHHHHHH
Confidence 3333444 4799998888765544 2344444333
No 5
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=12.67 E-value=1.1e+02 Score=22.68 Aligned_cols=16 Identities=44% Similarity=0.804 Sum_probs=14.6
Q ss_pred CchhhHHHHhhcchhh
Q 013937 122 PTVGGLLNATFGNATE 137 (433)
Q Consensus 122 ~~vgGll~a~~gn~pE 137 (433)
+|+||++..-+|..|+
T Consensus 36 ~Tl~G~i~~~lg~iP~ 51 (83)
T 3llb_A 36 DTVGGLVMSAFGHLPK 51 (83)
T ss_dssp SBHHHHHHHHHSSCCC
T ss_pred cCHHHHHHHHhCcCCC
Confidence 6999999999999885
No 6
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=12.64 E-value=1.1e+02 Score=22.67 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=14.6
Q ss_pred CchhhHHHHhhcchhh
Q 013937 122 PTVGGLLNATFGNATE 137 (433)
Q Consensus 122 ~~vgGll~a~~gn~pE 137 (433)
+|+||++..-+|..|+
T Consensus 36 ~Tl~G~i~~~lg~iP~ 51 (81)
T 3lae_A 36 RTFNGLILEHLEEIPD 51 (81)
T ss_dssp SBHHHHHHHHCSSCCC
T ss_pred ccHHHHHHHHhCCCCC
Confidence 6999999999999886
No 7
>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4
Probab=9.96 E-value=1.6e+02 Score=22.06 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=14.3
Q ss_pred CchhhHHHHhhcchhh
Q 013937 122 PTVGGLLNATFGNATE 137 (433)
Q Consensus 122 ~~vgGll~a~~gn~pE 137 (433)
+|+||++..-+|..|+
T Consensus 35 dTl~G~v~~~lg~iP~ 50 (87)
T 2rk5_A 35 DTIAGFYLTGVGTIPS 50 (87)
T ss_dssp CBHHHHHHHHHCSCCC
T ss_pred ccHHHHHHHHhCcCCC
Confidence 6999999999998885
No 8
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=8.89 E-value=6e+02 Score=20.50 Aligned_cols=49 Identities=18% Similarity=0.049 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013937 71 INVLLPFGPLVILLHYVTEKHEWVFFFSLLGITPLAERLGFATEQLAFYTG 121 (433)
Q Consensus 71 ~~~ll~~vP~~~~~~~~~~~~~~iF~~~~l~ii~la~~l~~~~e~la~~~g 121 (433)
+-...+.+|+++..+.... -|++.+..+.++..+|.+..+.|.+.++.+
T Consensus 35 ~~~~~~~i~~~~~l~~s~~--e~~~li~~i~lVl~~EllNTAIE~vvD~v~ 83 (121)
T 2kdc_A 35 GVAVLLAVVIACWLDVDAI--TRVLLISSVMLVMIVEILNSAIEAVVDRIG 83 (121)
T ss_dssp HHHHHHHHHHHHHCCCCCS--HHHHHHHHHHHHHHHHTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444555666655543322 344555566677899999999999999887
No 9
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=8.40 E-value=5.8e+02 Score=20.53 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=0.0
Q ss_pred HhCCcccHHHHhhhHHH------HHHHHHHHHHHHHhhhcCCccc-----ccchhHHHHHHHHHHHHHHHHHh
Q 013937 339 MKDKLDITIGVAIGSST------QISMFVIPFCVVVGWFMGQPMD-----LNFQLFETASLFIAVLVVAFMLQ 400 (433)
Q Consensus 339 ~~g~~dlaig~~iGS~i------~~~l~v~pl~vli~~~~g~~~~-----l~~~~~~~~~l~~svl~~~~~~~ 400 (433)
|-|-.|+|+|.++|++. +.--++.|+..++ .-|.+++ .....-..+.-++..+++++.+.
T Consensus 31 rGNViDLAVgVIIG~AF~~IV~SlV~dIImPlIg~l--~gg~df~~~l~~~~i~yG~Fi~avInFlIiA~viF 101 (114)
T 3hzq_A 31 KGNVLDLAIAVVMGAAFNKIICSLVENIIMPLIGKI--FGSVDFAKEWSFWGIKYGLFIQSVIDFIIIAFALF 101 (114)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHS--SSCSCCCTTCCCSSCCCTHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCcccCeeeeeeeHHHHHHHHHHHHHHHHHHH
No 10
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=8.34 E-value=2e+02 Score=21.72 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHhC--------CchhhHHHHhhcchhh
Q 013937 113 TEQLAFYTG--------PTVGGLLNATFGNATE 137 (433)
Q Consensus 113 ~e~la~~~g--------~~vgGll~a~~gn~pE 137 (433)
.+.+.+.+| +|+||++..-+|..|+
T Consensus 26 l~dl~~~l~~~l~~~~~~TlgG~i~~~lg~iP~ 58 (93)
T 2r2z_A 26 IDEFNEVFETDLHMSDVDTMAGYLITALGTIPD 58 (93)
T ss_dssp HHHHHHHHTCCCCCTTCCBHHHHHHHHHSSCCC
T ss_pred HHHHHHHhCCCCCCCCcccHHHHHHHHhCCCCC
Done!