Query 013938
Match_columns 433
No_of_seqs 173 out of 416
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 08:53:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 100.0 3.1E-52 6.6E-57 415.2 1.7 291 76-382 6-346 (351)
2 KOG3849 GDP-fucose protein O-f 97.9 0.00011 2.4E-09 73.3 12.1 278 66-380 26-369 (386)
3 PF05830 NodZ: Nodulation prot 97.1 0.015 3.3E-07 59.1 15.3 252 69-370 2-290 (321)
4 KOG3705 Glycoprotein 6-alpha-L 76.0 11 0.00023 40.4 7.9 125 206-366 340-475 (580)
5 PF14771 DUF4476: Domain of un 71.6 1.5 3.3E-05 36.6 0.4 54 283-348 39-92 (95)
6 PF00799 Gemini_AL1: Geminivir 39.9 28 0.00062 30.8 3.0 29 281-310 14-42 (114)
7 PF10892 DUF2688: Protein of u 34.7 27 0.0006 27.5 1.8 16 280-296 42-57 (60)
8 TIGR01354 cyt_deam_tetra cytid 30.1 47 0.001 29.5 2.7 47 284-331 80-127 (127)
9 smart00874 B5 tRNA synthetase 29.0 53 0.0011 25.5 2.6 24 276-300 12-35 (71)
10 PRK05578 cytidine deaminase; V 28.9 45 0.00098 30.0 2.5 41 291-332 91-131 (131)
11 PLN02232 ubiquinone biosynthes 25.3 68 0.0015 29.0 3.0 28 283-310 125-152 (160)
12 PRK11611 enhanced serine sensi 23.7 83 0.0018 31.5 3.5 74 279-357 100-183 (246)
13 PRK15451 tRNA cmo(5)U34 methyl 23.2 88 0.0019 30.3 3.5 27 279-305 204-230 (247)
14 PF08497 Radical_SAM_N: Radica 23.1 1.9E+02 0.0041 29.9 5.9 35 358-392 71-115 (302)
15 PRK10556 hypothetical protein; 22.3 58 0.0013 28.5 1.8 20 284-303 3-22 (111)
16 PF03484 B5: tRNA synthetase B 20.9 65 0.0014 25.5 1.7 25 276-301 12-36 (70)
17 PF13756 Stimulus_sens_1: Stim 20.9 1.1E+02 0.0024 26.6 3.3 28 284-311 1-28 (112)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=100.00 E-value=3.1e-52 Score=415.19 Aligned_cols=291 Identities=28% Similarity=0.432 Sum_probs=197.9
Q ss_pred ecCChhhHHHHHHHHHHHHHhhcceeeccccccccccCCCCC-----CCccccHHHHHHhccCCcEEeccCCccccCCCc
Q 013938 76 CYGGLNQMRRDFCDGVGVAHLLNATLVLPKFEVAAYWNESSD-----FADIFEADYFIQHMDGFVKVVKELPPEISSKEP 150 (433)
Q Consensus 76 ~~GGlnq~R~~IcdaV~vArlLnATLVlP~l~~~s~W~D~S~-----F~dIFD~dhFI~sL~~dVrIvk~LP~~~~~~~~ 150 (433)
+.||+||||.++++||++|++||+|||||.+...+.|++.++ |+++||+++|++.++++|++.+.+|........
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 889999999999999999999999999999999999999987 999999999999999899999888854433110
Q ss_pred -------------------------------ccccccC-CCChhchHHhhhhhhhcC------ceEEEccccccccc-CC
Q 013938 151 -------------------------------FHVDCSK-RKGQFDYVESVLPALLEH------KYISLTPAMSQRRD-RY 191 (433)
Q Consensus 151 -------------------------------~~~~~~~-~~s~~~Y~~~vlp~l~k~------~vi~l~p~~~~l~~-~~ 191 (433)
....... +.++..|+++++|.+.++ +++.|.++...+.+ ..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 0001111 223446788888888876 99999998777754 46
Q ss_pred hhHHhHHhHHHhhcccccchHHHHHHHHHHHhcC---CCeeEeecCcchhhhhhcccccCCCChhHHHHHHHHhcCCCCC
Q 013938 192 PRFAKAALCQACYSALRLTRSLQKKAAELLEAIP---KPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPW 268 (433)
Q Consensus 192 P~~~q~lRCr~~f~ALrF~~~I~~lg~~lv~rm~---~~yiAlHLR~E~Dmla~sgC~~~g~~~~e~e~l~~~R~~~~~w 268 (433)
+.++|+ +|+|+++|+++|+++++++. ++|||+|||+|+|| +++|.+ ++ +.+.|+..|... .
T Consensus 166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~-~~---~~~~~~~~~~~~--~ 229 (351)
T PF10250_consen 166 DRDLQR--------YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEF-KG---ERHLLASPRCWG--K 229 (351)
T ss_dssp GGGGGG--------G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT--T-------TTTHHHH---G
T ss_pred CccceE--------EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--Hhhccc-CC---chHHHHHhHhhc--c
Confidence 777765 99999999999999999987 89999999999999 899998 44 445566665310 0
Q ss_pred CchhhhhhhcCCCCCCCHHHHHHHHHHcCCCCccEEEEeecC---CchhhhHHHHhcccccccccCCChhhhccccCCcc
Q 013938 269 TGEVAHIWRRRGKCPLTPNETALILQALSIPTNTNIYLAAGD---GLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTK 345 (433)
Q Consensus 269 ~~~~~~~~R~~G~CPLtPeEvgl~LralGf~~~T~IYlAaGe---g~~~l~~Lk~~FPnl~tKe~L~s~eeL~~~~s~~~ 345 (433)
+...+...+..+.||++|++++.+++++|+.+.|.||||+++ |...|++|++.||++++|+++.+.+|++++..+++
T Consensus 230 ~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (351)
T PF10250_consen 230 KSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLNDDQL 309 (351)
T ss_dssp GGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-----S--
T ss_pred ccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccccch
Confidence 111233567889999999999999999999999999999999 67789999999999999999999999999988999
Q ss_pred cceeeEEeecCceeeecCCCchhHHHHHHhhhcCCCc
Q 013938 346 AALDYYVSINSDSYMATYFGNMDKMVAAMRAFKGLYK 382 (433)
Q Consensus 346 AALDyiV~l~SDvFv~t~~GNfa~~V~GhR~y~G~~k 382 (433)
|+||++||++||+||+|..++|+.+|+++|++.|+.+
T Consensus 310 a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~~~ 346 (351)
T PF10250_consen 310 AMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGKPK 346 (351)
T ss_dssp HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSSS-
T ss_pred hHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCCCC
Confidence 9999999999999999998889999999999999663
No 2
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00011 Score=73.31 Aligned_cols=278 Identities=17% Similarity=0.271 Sum_probs=150.7
Q ss_pred CCCCceEEE-EecCChhhHHHHHHHHHHHHHhhcceeecccc---ccccccCCCCCCCccccHH------------HHHH
Q 013938 66 PKSNGYICV-DCYGGLNQMRRDFCDGVGVAHLLNATLVLPKF---EVAAYWNESSDFADIFEAD------------YFIQ 129 (433)
Q Consensus 66 ~~snGyl~v-~~~GGlnq~R~~IcdaV~vArlLnATLVlP~l---~~~s~W~D~S~F~dIFD~d------------hFI~ 129 (433)
...||||+. .|-|-..||-..+.-..|.|+.||.|||+|.. ++-.+=+---.|...|.++ .|++
T Consensus 26 ~DP~GYl~yCPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwiEy~~pe~~n~~vpf~~yF~vepl~~YhRVitm~dFm~ 105 (386)
T KOG3849|consen 26 WDPAGYLLYCPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWIEYKHPETKNLMVPFEFYFQVEPLAKYHRVITMQDFMK 105 (386)
T ss_pred CCCCccEEEccccccccchHHHHHHHHHHHHHhcccccCCcchhccCCcccccccchhheeecccHhhhhhheeHHHHHH
Confidence 357899988 69999999999999999999999999999965 2222211134788888775 3444
Q ss_pred hccCC-------cEEeccC-----Ccc----ccCCCcccccccCC----CChhc---------hH---Hhhhhh--hhcC
Q 013938 130 HMDGF-------VKVVKEL-----PPE----ISSKEPFHVDCSKR----KGQFD---------YV---ESVLPA--LLEH 175 (433)
Q Consensus 130 sL~~d-------VrIvk~L-----P~~----~~~~~~~~~~~~~~----~s~~~---------Y~---~~vlp~--l~k~ 175 (433)
.|..+ |-+.-+- |.. ....+|+..-|..- ...++ |. ++-+.. -.++
T Consensus 106 klapthwp~~~Rva~c~k~a~qr~pdkp~Ch~KeGNPFGPfWDqfhvsFv~sE~f~~i~Fd~~~~~~~~kW~~kfp~eey 185 (386)
T KOG3849|consen 106 KLAPTHWPGTPRVAICDKSAAQRSPDKPGCHSKEGNPFGPFWDQFHVSFVGSEYFGDIGFDLNQMGSRKKWLEKFPSEEY 185 (386)
T ss_pred HhCcccCCCCcceeeeehhhhccCCCCCCCcccCCCCCCCchhheEeeeeccccccccccchhhcchHHHHHhhCCcccC
Confidence 44433 1111110 110 01112221100000 00000 11 111222 1344
Q ss_pred ceEEEcccccc---cccCChhHHhHHhHHHhhcccccchHHHHHHHHHHHh-cCCCeeEeecCcchhhhhhcccccCCCC
Q 013938 176 KYISLTPAMSQ---RRDRYPRFAKAALCQACYSALRLTRSLQKKAAELLEA-IPKPFLSLHLRFEPDMVAYSQCEYQGLS 251 (433)
Q Consensus 176 ~vi~l~p~~~~---l~~~~P~~~q~lRCr~~f~ALrF~~~I~~lg~~lv~r-m~~~yiAlHLR~E~Dmla~sgC~~~g~~ 251 (433)
-|+.|+..-.. +...+| +|+ | ||.+.+|.+.|++.+.. |.+||+++|||...||+-- |.+-.-+
T Consensus 186 PVLAf~gAPA~FPv~~e~~~--lQk------Y--l~WS~r~~e~~k~fI~a~L~rpfvgiHLRng~DWvra--Cehikd~ 253 (386)
T KOG3849|consen 186 PVLAFSGAPAPFPVKGEVWS--LQK------Y--LRWSSRITEQAKKFISANLARPFVGIHLRNGADWVRA--CEHIKDT 253 (386)
T ss_pred ceeeecCCCCCCcccccccc--HHH------H--HHHHHHHHHHHHHHHHHhcCcceeEEEeecCchHHHH--HHHhccc
Confidence 56666532111 012223 343 3 88999999999997654 7789999999999999864 7631110
Q ss_pred hhHHHHHHHHhcCCCCCCc------hh-hhhhhcCCCCCCCHHHHH----HHHHHcCCCCccEEEEeecCCchhhhHHH-
Q 013938 252 PTSMQAIEAARGDRKPWTG------EV-AHIWRRRGKCPLTPNETA----LILQALSIPTNTNIYLAAGDGLMEIEGLT- 319 (433)
Q Consensus 252 ~~e~e~l~~~R~~~~~w~~------~~-~~~~R~~G~CPLtPeEvg----l~LralGf~~~T~IYlAaGeg~~~l~~Lk- 319 (433)
. ..+.-. +. ...--....|-=+-+|+- +-.+.+| .-..+|+|+-.. .-+.-|.
T Consensus 254 ~------------~~hlfASpQClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~--dakSVfVAsDs~-hmi~Eln~ 318 (386)
T KOG3849|consen 254 T------------NRHLFASPQCLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIG--DAKSVFVASDSD-HMIDELNE 318 (386)
T ss_pred C------------CCccccChhhccccccccccchhhhCccHHHHHHHHHHHHhhhc--ccceEEEeccch-hhhHHHHH
Confidence 0 001100 00 000011234533444442 2222333 344699998763 2122232
Q ss_pred HhcccccccccCCChhhhccccCCcccceeeEEeecCceeeecCCCchhHHHHHHhhhcCC
Q 013938 320 SVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATYFGNMDKMVAAMRAFKGL 380 (433)
Q Consensus 320 ~~FPnl~tKe~L~s~eeL~~~~s~~~AALDyiV~l~SDvFv~t~~GNfa~~V~GhR~y~G~ 380 (433)
+++|-=+.-.. |+ .--+-+|..|.-+||.||++--++|+..|.-.|-..|.
T Consensus 319 aL~~~~i~vh~------l~----pdd~y~dLaIlGqadhFiGNCvSsfsafvKRERD~~Gr 369 (386)
T KOG3849|consen 319 ALKPYEIEVHR------LE----PDDMYTDLAILGQADHFIGNCVSSFSAFVKRERDHAGR 369 (386)
T ss_pred hhcccceeEEe------cC----cccchhhhhhhcccchhhhhhHHHHHHHHhhhhcccCC
Confidence 22221111001 11 12345889999999999999999999999999988883
No 3
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=97.13 E-value=0.015 Score=59.11 Aligned_cols=252 Identities=17% Similarity=0.272 Sum_probs=123.2
Q ss_pred CceEEEEecCChhhHHHHHHHHHHHHHhhcceeeccccccccccCCC----CCCCccccHHHHHHhcc--CCcEEecc--
Q 013938 69 NGYICVDCYGGLNQMRRDFCDGVGVAHLLNATLVLPKFEVAAYWNES----SDFADIFEADYFIQHMD--GFVKVVKE-- 140 (433)
Q Consensus 69 nGyl~v~~~GGlnq~R~~IcdaV~vArlLnATLVlP~l~~~s~W~D~----S~F~dIFD~dhFI~sL~--~dVrIvk~-- 140 (433)
+.|+..+--+|+|.-=-+++-|-.+|+-.|.||||= |+++ ..|...|++ |-+-.+ ..|+|.-+
T Consensus 2 ~r~~~~r~r~g~gd~l~~la~aw~~a~~~~r~l~id-------w~~s~~~~~~f~n~f~~--ffepv~~i~~~~~~~~d~ 72 (321)
T PF05830_consen 2 QRFVVSRRRTGLGDCLWSLAAAWRYAKRTGRTLVID-------WRGSCYLDQPFTNAFPV--FFEPVEDIAGVRVICDDR 72 (321)
T ss_dssp --EEEEE--S-HHHHHHHHHHHHHHHHHHT-EEEEE--------BT-TT-SSTTSBSHHH--HB---SEETTEEEE-SGG
T ss_pred CceEEEeccCCchhHHHHHHHHHHHHHHhCCeEEEE-------cCCceecCCcccccCCc--ccchhhhhcCceeEecch
Confidence 568888999999999999999999999999999984 5553 567777664 444433 33555522
Q ss_pred -----CCccccC--CCcccccccCCCChhchH---Hhhhhhhhc-------CceEEEcccccccccCChhHHhHHhHHHh
Q 013938 141 -----LPPEISS--KEPFHVDCSKRKGQFDYV---ESVLPALLE-------HKYISLTPAMSQRRDRYPRFAKAALCQAC 203 (433)
Q Consensus 141 -----LP~~~~~--~~~~~~~~~~~~s~~~Y~---~~vlp~l~k-------~~vi~l~p~~~~l~~~~P~~~q~lRCr~~ 203 (433)
+|-.+.. -+...+++-.+ |..|+ .+-|..|.. ..||.-.=.+++= +-+.. |.-
T Consensus 73 i~~~~~~g~~fp~~w~~p~~~~~~~--pd~qi~re~d~l~~lf~~~~d~~a~~vv~d~c~~~~c------~~~ae--R~i 142 (321)
T PF05830_consen 73 INQFSFPGPFFPAWWNKPSIDCVYR--PDEQIFRERDELRQLFQSQEDHEANTVVCDACLMWRC------DEEAE--REI 142 (321)
T ss_dssp GGT----SSEESGGGGS-GGGGS-----HHHHHHHHHHHHHHHHSSS--S-SEEEE-S--TTSS-------HHHH--HHH
T ss_pred hhhhcCCCCcChhHHhCCCcceecC--ChHHHhhhhHHHHHHhhcccccccchhhhHhhcCCcc------hhHHH--HHH
Confidence 2211110 01111222222 12232 112333322 2566655444431 12222 345
Q ss_pred hcccccchHHHHHHHHHHHh-cCC-CeeEeecCcc--hhhhhhcccccCCCChhHHHHHHHHhcCCCCCCchhhhhhhcC
Q 013938 204 YSALRLTRSLQKKAAELLEA-IPK-PFLSLHLRFE--PDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRR 279 (433)
Q Consensus 204 f~ALrF~~~I~~lg~~lv~r-m~~-~yiAlHLR~E--~Dmla~sgC~~~g~~~~e~e~l~~~R~~~~~w~~~~~~~~R~~ 279 (433)
|..|+-+++|++..+.+.++ +.| .=|++|.|.- +|.+.+ +|+ |........+.
T Consensus 143 f~slkpR~eIqarID~iy~ehf~g~~~IGVHVRhGngeD~~~h-~~~---------------------~~D~e~~L~~V- 199 (321)
T PF05830_consen 143 FSSLKPRPEIQARIDAIYREHFAGYSVIGVHVRHGNGEDIMDH-APY---------------------WADEERALRQV- 199 (321)
T ss_dssp HHHS-B-HHHHHHHHHHHHHHTTTSEEEEEEE-------------------------------------HHHHHHHHHH-
T ss_pred HHhCCCCHHHHHHHHHHHHHHcCCCceEEEEEeccCCcchhcc-Ccc---------------------ccCchHHHHHH-
Confidence 89999999999999998766 454 4899999931 222222 122 32221000000
Q ss_pred CCCCCCHHHHHHHHHHcCCCCccEEEEeecCCchhhhHHHHhcccccccccCCChhhhccccC-------CcccceeeEE
Q 013938 280 GKCPLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHG-------NTKAALDYYV 352 (433)
Q Consensus 280 G~CPLtPeEvgl~LralGf~~~T~IYlAaGeg~~~l~~Lk~~FPnl~tKe~L~s~eeL~~~~s-------~~~AALDyiV 352 (433)
......++++-.+.++.|+||+-. ...++-+++.||.+++-++=..+..-.++|+ -..|-+|.+.
T Consensus 200 -------~~ai~~ak~~~~~k~~~IFLATDS-aeVid~fr~~FPdiiti~k~F~~~~~g~Lhs~~~g~~gg~~ALIDM~L 271 (321)
T PF05830_consen 200 -------CTAIDKAKALAPPKPVRIFLATDS-AEVIDQFRKKFPDIITIPKQFPASQAGPLHSAAVGIEGGESALIDMYL 271 (321)
T ss_dssp -------HHHHHHHHTS--SS-EEEEEEES--HHHHHHHHHHSTTEE----------------HHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHhccCCCCeeEEEecCc-HHHHHHHHHHCCCeEEcccccCCCCCCcCcccccccchHHHHHHHHHH
Confidence 011123455666778999999877 3668899999999988755433222113333 2458899999
Q ss_pred eecCceee-ecCCCchhHH
Q 013938 353 SINSDSYM-ATYFGNMDKM 370 (433)
Q Consensus 353 ~l~SDvFv-~t~~GNfa~~ 370 (433)
..++|+-| .+-.+.|.+.
T Consensus 272 LSrCD~LIr~~ptS~Fsr~ 290 (321)
T PF05830_consen 272 LSRCDYLIRFPPTSAFSRY 290 (321)
T ss_dssp HTTSSEEEEESTT-GGGHH
T ss_pred HHhCCeEEEcCCCchhhhH
Confidence 99999999 5666656554
No 4
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=75.98 E-value=11 Score=40.37 Aligned_cols=125 Identities=20% Similarity=0.294 Sum_probs=79.2
Q ss_pred ccccchHHHHHHHHHHHhcC--CCeeEeecCcchhhhhhcccccCCCChhHHHHHHHHhcCCCCCCchhhhhhhcCCCCC
Q 013938 206 ALRLTRSLQKKAAELLEAIP--KPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCP 283 (433)
Q Consensus 206 ALrF~~~I~~lg~~lv~rm~--~~yiAlHLR~E~Dmla~sgC~~~g~~~~e~e~l~~~R~~~~~w~~~~~~~~R~~G~CP 283 (433)
-+|++|-.++.-++-...+. +|-|++|.|-- |=+ ++++---.++.+=. |.+
T Consensus 340 L~Rpqp~t~~~l~~a~k~lg~~~PivGvhvRRT-DKV---------GTEAAfH~~eEYM~----~vE------------- 392 (580)
T KOG3705|consen 340 LMRPQPATQEKLDKALKSLGLDKPIVGVHVRRT-DKV---------GTEAAFHALEEYME----WVE------------- 392 (580)
T ss_pred HhCCChhhHHHHHHHHHhCCCCCceeeEEEEec-ccc---------cchhhhhhHHHHHH----HHH-------------
Confidence 68999999999888888876 79999999953 211 11111112222211 211
Q ss_pred CCHHHHHHHHHHcCCCCccEEEEeecCCchhhhHHHHhcccccccccCCChhhhccc---------cCCcccceeeEEee
Q 013938 284 LTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTRM---------HGNTKAALDYYVSI 354 (433)
Q Consensus 284 LtPeEvgl~LralGf~~~T~IYlAaGeg~~~l~~Lk~~FPnl~tKe~L~s~eeL~~~---------~s~~~AALDyiV~l 354 (433)
+-=.+|..=|=+-.-+||||+-+. ..+.--|..|||. .+.+..|.+.. .+..---+|..+.+
T Consensus 393 ----~~f~~le~rg~~~~rRiflAsDDp-~vv~EAk~kYPnY----e~igd~eia~~A~l~nRYTd~sL~GvIlDIh~LS 463 (580)
T KOG3705|consen 393 ----IWFKVLEKRGKPLERRIFLASDDP-TVVPEAKNKYPNY----EVIGDTEIAKTAQLNNRYTDASLMGVILDIHILS 463 (580)
T ss_pred ----HHHHHHHHhCCchhheEEEecCCc-hhchHhhccCCCc----EEeccHHHHHHhhccccchhhhhhheeeeeeeec
Confidence 112233444556667999999984 3455668889998 45555555431 12334557999999
Q ss_pred cCceeeecCCCc
Q 013938 355 NSDSYMATYFGN 366 (433)
Q Consensus 355 ~SDvFv~t~~GN 366 (433)
.+|..|.|+++-
T Consensus 464 ~~d~LVCTFSSQ 475 (580)
T KOG3705|consen 464 KVDYLVCTFSSQ 475 (580)
T ss_pred ccceEEEechHH
Confidence 999999988765
No 5
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=71.60 E-value=1.5 Score=36.65 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHcCCCCccEEEEeecCCchhhhHHHHhcccccccccCCChhhhccccCCcccce
Q 013938 283 PLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAAL 348 (433)
Q Consensus 283 PLtPeEvgl~LralGf~~~T~IYlAaGeg~~~l~~Lk~~FPnl~tKe~L~s~eeL~~~~s~~~AAL 348 (433)
++|-.|++-+|+...|+ ..+|+.++-++|++++++.--+-.+.-.|.+++..|-
T Consensus 39 ~~T~~Qv~~il~~f~fd------------~~kl~~lk~l~p~i~D~~n~~~i~~~f~f~s~k~~~~ 92 (95)
T PF14771_consen 39 CFTCAQVKQILSLFSFD------------NDKLKALKLLYPYIVDPQNYYTIIDAFSFSSDKDKAR 92 (95)
T ss_pred ceeHHHHHHHHHHcCCC------------HHHHHHHHHHhhhccCHHHHHHHHHHhcCcccHHHHH
Confidence 49999999999999999 5789999999999999975333223333445544443
No 6
>PF00799 Gemini_AL1: Geminivirus Rep catalytic domain; InterPro: IPR022690 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome []. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer []. It is found in association with PF08283 from PFAM. ; GO: 0006260 DNA replication; PDB: 1L5I_A 1L2M_A.
Probab=39.92 E-value=28 Score=30.77 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=16.5
Q ss_pred CCCCCHHHHHHHHHHcCCCCccEEEEeecC
Q 013938 281 KCPLTPNETALILQALSIPTNTNIYLAAGD 310 (433)
Q Consensus 281 ~CPLtPeEvgl~LralGf~~~T~IYlAaGe 310 (433)
+|||||||+...|+++--+ ....||..+.
T Consensus 14 qC~l~ke~~l~~L~~l~~~-~~~~yI~v~r 42 (114)
T PF00799_consen 14 QCSLTKEEALEQLKNLLTP-SNKKYIRVCR 42 (114)
T ss_dssp T----HHHHHHHHHH---S-S-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCc-cCceEEEeec
Confidence 6999999999999999765 3677876654
No 7
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=34.68 E-value=27 Score=27.49 Aligned_cols=16 Identities=50% Similarity=0.904 Sum_probs=13.3
Q ss_pred CCCCCCHHHHHHHHHHc
Q 013938 280 GKCPLTPNETALILQAL 296 (433)
Q Consensus 280 G~CPLtPeEvgl~Lral 296 (433)
|-| +||||-+.+++++
T Consensus 42 ~~C-itpEE~~~I~e~~ 57 (60)
T PF10892_consen 42 GDC-ITPEEDREILEAT 57 (60)
T ss_pred hcc-CCHHHHHHHHHHH
Confidence 456 9999999999875
No 8
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=30.05 E-value=47 Score=29.47 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=36.4
Q ss_pred CCHHHH-HHHHHHcCCCCccEEEEeecCCchhhhHHHHhcccccccccC
Q 013938 284 LTPNET-ALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSAL 331 (433)
Q Consensus 284 LtPeEv-gl~LralGf~~~T~IYlAaGeg~~~l~~Lk~~FPnl~tKe~L 331 (433)
++|--. -.+|..++ +.++.|++...++.....+|+++.|.-+.+++|
T Consensus 80 ~sPCG~Crq~l~e~~-~~~~~v~~~~~~~~~~~~~l~eLLP~~f~~~~l 127 (127)
T TIGR01354 80 VSPCGACRQVLAEFA-GPDTPIYMTNNDGTYKVYTVGELLPFGFGPSDL 127 (127)
T ss_pred cCccHHHHHHHHHhC-CCCcEEEEECCCCCEEEEEHHHhCcCcCCcCcC
Confidence 556554 36788887 668999999988866667899999988877664
No 9
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=28.97 E-value=53 Score=25.53 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=20.2
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCCCC
Q 013938 276 WRRRGKCPLTPNETALILQALSIPT 300 (433)
Q Consensus 276 ~R~~G~CPLtPeEvgl~LralGf~~ 300 (433)
.+..|. .++++|+.-+|+.|||.-
T Consensus 12 ~~llG~-~i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 12 NRLLGL-DLSAEEIEEILKRLGFEV 35 (71)
T ss_pred HHHHCC-CCCHHHHHHHHHHCCCeE
Confidence 456675 499999999999999984
No 10
>PRK05578 cytidine deaminase; Validated
Probab=28.91 E-value=45 Score=29.98 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=32.7
Q ss_pred HHHHHcCCCCccEEEEeecCCchhhhHHHHhcccccccccCC
Q 013938 291 LILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALR 332 (433)
Q Consensus 291 l~LralGf~~~T~IYlAaGeg~~~l~~Lk~~FPnl~tKe~L~ 332 (433)
.+|..++ +.+|.||+...++.....+|+++.|.-+++++|+
T Consensus 91 Q~l~e~~-~~~~~v~l~~~~~~~~~~~l~eLLP~~f~~~~l~ 131 (131)
T PRK05578 91 QVLAEFG-GPDLLVTLVAKDGPTGEMTLGELLPYAFTPDDLG 131 (131)
T ss_pred HHHHHhC-CCCcEEEEEcCCCCEEEEEHHHhCcCcCChhhcC
Confidence 4566664 5789999999887666688999999999888763
No 11
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=25.26 E-value=68 Score=29.00 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHcCCCCccEEEEeecC
Q 013938 283 PLTPNETALILQALSIPTNTNIYLAAGD 310 (433)
Q Consensus 283 PLtPeEvgl~LralGf~~~T~IYlAaGe 310 (433)
+++|+|...+|+..||.+-+.-+++.|-
T Consensus 125 f~~~~el~~ll~~aGF~~~~~~~~~~g~ 152 (160)
T PLN02232 125 YLTGEELETLALEAGFSSACHYEISGGF 152 (160)
T ss_pred CcCHHHHHHHHHHcCCCcceEEECcchH
Confidence 4899999999999999999888887764
No 12
>PRK11611 enhanced serine sensitivity protein SseB; Provisional
Probab=23.70 E-value=83 Score=31.50 Aligned_cols=74 Identities=22% Similarity=0.369 Sum_probs=48.1
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCccEEEEeecC----C------chhhhHHHHhcccccccccCCChhhhccccCCcccce
Q 013938 279 RGKCPLTPNETALILQALSIPTNTNIYLAAGD----G------LMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAAL 348 (433)
Q Consensus 279 ~G~CPLtPeEvgl~LralGf~~~T~IYlAaGe----g------~~~l~~Lk~~FPnl~tKe~L~s~eeL~~~~s~~~AAL 348 (433)
-|++ ++|+||..+|..-|....+..-|-.|. | ..-++.|++.|.+- .-.-..=|..++.......
T Consensus 100 ~gk~-f~p~EI~~LL~~~~~~~~~~~~i~~g~~v~lg~p~~~P~~lv~~L~~lf~~~----k~V~rAyL~~~~~~~d~~p 174 (246)
T PRK11611 100 TGKE-FMPREISLLLGEEGNPLSSQEVLEGGESLLLSEVAEPPAQMIDSLTTLFKTI----KPVKRAFLASIKENADAQP 174 (246)
T ss_pred CCcc-cCHHHHHHHHhccCCCcceeEEeCCCCEEEecCCccchHHHHHHHHHHHhhc----chHHHHHHHHHhccCCCCC
Confidence 4777 999999999999999999998888776 2 22345677766432 2111111223332224556
Q ss_pred eeEEeecCc
Q 013938 349 DYYVSINSD 357 (433)
Q Consensus 349 DyiV~l~SD 357 (433)
.++|+++.|
T Consensus 175 ~LLI~le~~ 183 (246)
T PRK11611 175 NLLIGIEAD 183 (246)
T ss_pred ceEEEEecC
Confidence 688888885
No 13
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=23.20 E-value=88 Score=30.26 Aligned_cols=27 Identities=4% Similarity=-0.100 Sum_probs=22.1
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCccEEE
Q 013938 279 RGKCPLTPNETALILQALSIPTNTNIY 305 (433)
Q Consensus 279 ~G~CPLtPeEvgl~LralGf~~~T~IY 305 (433)
+-..|+|++|...+|+..||..-..+|
T Consensus 204 ~~~~~~~~~~~~~~L~~aGF~~v~~~~ 230 (247)
T PRK15451 204 NVMLTDSVETHKARLHKAGFEHSELWF 230 (247)
T ss_pred hhcccCCHHHHHHHHHHcCchhHHHHH
Confidence 356789999999999999998755444
No 14
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=23.09 E-value=1.9e+02 Score=29.93 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=23.6
Q ss_pred eeeecCCCchhHHHHHH-----hh----hc-CCCceeecChHHHH
Q 013938 358 SYMATYFGNMDKMVAAM-----RA----FK-GLYKTLFLSRKAFA 392 (433)
Q Consensus 358 vFv~t~~GNfa~~V~Gh-----R~----y~-G~~kti~Pdr~~l~ 392 (433)
.|++...|||.++|.-. || |. |-..-.||||-.+|
T Consensus 71 Lff~VsaGn~DSMV~hYTa~kk~R~~DaYtPGG~~g~RPDRAtiV 115 (302)
T PF08497_consen 71 LFFGVSAGNMDSMVNHYTASKKRRSDDAYTPGGKAGRRPDRATIV 115 (302)
T ss_pred EEEEEccccHHHHHHhhccccccccccCCCCCCCCCCCCCchhhH
Confidence 47777889999999732 22 22 33335899997665
No 15
>PRK10556 hypothetical protein; Provisional
Probab=22.27 E-value=58 Score=28.48 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHcCCCCccE
Q 013938 284 LTPNETALILQALSIPTNTN 303 (433)
Q Consensus 284 LtPeEvgl~LralGf~~~T~ 303 (433)
|-|.||+.+|+..||..+..
T Consensus 3 LRPDEVArVLe~aGF~~D~v 22 (111)
T PRK10556 3 LRPDEVARVLEKAGFTVDVV 22 (111)
T ss_pred cChHHHHHHHHhcCceEEEe
Confidence 67999999999999986653
No 16
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=20.86 E-value=65 Score=25.45 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=17.2
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCCCCc
Q 013938 276 WRRRGKCPLTPNETALILQALSIPTN 301 (433)
Q Consensus 276 ~R~~G~CPLtPeEvgl~LralGf~~~ 301 (433)
.+..|.. ++++|+.-+|+.|||.-.
T Consensus 12 ~~~lG~~-i~~~~i~~~L~~lg~~~~ 36 (70)
T PF03484_consen 12 NKLLGID-ISPEEIIKILKRLGFKVE 36 (70)
T ss_dssp HHHHTS----HHHHHHHHHHTT-EEE
T ss_pred HHHhCCC-CCHHHHHHHHHHCCCEEE
Confidence 4566764 999999999999999843
No 17
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=20.85 E-value=1.1e+02 Score=26.63 Aligned_cols=28 Identities=36% Similarity=0.489 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHcCCCCccEEEEeecCC
Q 013938 284 LTPNETALILQALSIPTNTNIYLAAGDG 311 (433)
Q Consensus 284 LtPeEvgl~LralGf~~~T~IYlAaGeg 311 (433)
|+||.++-+|+-|.-+++|+++|=.-+|
T Consensus 1 l~pe~a~plLrrL~~Pt~~RARlyd~dG 28 (112)
T PF13756_consen 1 LNPERARPLLRRLISPTRTRARLYDPDG 28 (112)
T ss_pred CCHHHHHHHHHHhCCCCCceEEEECCCC
Confidence 6899999999999999999755544443
Done!