Query 013938
Match_columns 433
No_of_seqs 173 out of 416
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 19:54:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 1.9E-15 6.6E-20 154.1 13.1 295 66-382 19-383 (408)
2 3zy2_A Putative GDP-fucose pro 99.5 5.9E-13 2E-17 134.0 16.3 277 67-379 6-348 (362)
3 2hhc_A NODZ, nodulation fucosy 97.6 0.0013 4.5E-08 64.4 15.3 263 68-372 3-294 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 97.4 0.012 4E-07 62.5 20.8 250 68-379 144-421 (526)
5 1p3q_Q VPS9P, vacuolar protein 45.0 3.3 0.00011 31.0 -0.7 38 313-353 14-51 (54)
6 1wgl_A TOLL-interacting protei 44.4 1.6 5.3E-05 33.2 -2.7 49 312-363 10-58 (59)
7 2dhy_A CUE domain-containing p 24.9 6.5 0.00022 30.6 -2.1 39 312-353 19-57 (67)
8 2fr5_A Cytidine deaminase; tet 22.6 49 0.0017 29.0 2.8 98 229-331 38-142 (146)
9 1l2m_A REP protein; A+B fold, 21.0 89 0.003 26.7 4.0 29 281-310 17-45 (118)
10 2g7j_A Putative cytoplasmic pr 19.4 43 0.0015 28.6 1.6 19 284-302 3-21 (124)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.62 E-value=1.9e-15 Score=154.07 Aligned_cols=295 Identities=17% Similarity=0.172 Sum_probs=170.4
Q ss_pred CCCCceEEEEe-cC-ChhhHHHHHHHHHHHHHhhcce----eeccccccccccCCC------CCCCccccHHHHHHhccC
Q 013938 66 PKSNGYICVDC-YG-GLNQMRRDFCDGVGVAHLLNAT----LVLPKFEVAAYWNES------SDFADIFEADYFIQHMDG 133 (433)
Q Consensus 66 ~~snGyl~v~~-~G-Glnq~R~~IcdaV~vArlLnAT----LVlP~l~~~s~W~D~------S~F~dIFD~dhFI~sL~~ 133 (433)
...++||+-.. .| |.|+||...-.|.+.|+.||.| ||||-...-.-|+-. -.|++.||++++-+
T Consensus 19 ~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~~---- 94 (408)
T 4ap5_A 19 ASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNK---- 94 (408)
T ss_dssp -CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHHT----
T ss_pred ccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHHh----
Confidence 56789999875 45 8999999999999999999999 999966432233332 37999999987543
Q ss_pred CcEEe------ccCC--------------ccccC---CCccc-ccc-----------cCCCChhc-hHH-----------
Q 013938 134 FVKVV------KELP--------------PEISS---KEPFH-VDC-----------SKRKGQFD-YVE----------- 166 (433)
Q Consensus 134 dVrIv------k~LP--------------~~~~~---~~~~~-~~~-----------~~~~s~~~-Y~~----------- 166 (433)
.|+|+ ++.- ..... ..... ..| ....++++ |.+
T Consensus 95 ~vpVI~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~~ 174 (408)
T 4ap5_A 95 NIPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSV 174 (408)
T ss_dssp TSCEEEHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEEE
T ss_pred hCCeeEHHHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEEE
Confidence 44554 1111 00000 00000 000 00001111 100
Q ss_pred ----h-hhhhhhcC---ceEEEcccccccccCChhHHhHHhHHHhhcccccchHHHHHHHHHHHh-cCCCeeEeecCcch
Q 013938 167 ----S-VLPALLEH---KYISLTPAMSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELLEA-IPKPFLSLHLRFEP 237 (433)
Q Consensus 167 ----~-vlp~l~k~---~vi~l~p~~~~l~~~~P~~~q~lRCr~~f~ALrF~~~I~~lg~~lv~r-m~~~yiAlHLR~E~ 237 (433)
. +-|.+.+. ..+-+..+...+++. |....- ...-..|+|++.|.+.|++.++. |.++|+++|+|.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~-~~~~~~---~~~~r~l~~s~~l~~~a~~fi~~~L~~~~~~~h~r~~~ 250 (408)
T 4ap5_A 175 QGSASIVAPLLLRNTSARSVMLDRAENLLHDH-YGGKEY---WDTRRSMVFARHLREVGDEFRSRHLNSTDDADRIPFQE 250 (408)
T ss_dssp CSBGGGGHHHHHHCTTCSEEEEESGGGSBCSS-TTSHHH---HHHHHTCCBCHHHHHHHHHHHHHHHCCCTTTTTCCCCS
T ss_pred eecchhhhhhhhhcCChhhhhhhhcccCCccc-cchHhh---hhHHHHhhhhHHHHHHHHHHHHHHhCcccceeecccch
Confidence 0 11222221 111111222222221 111111 11124799999999999998775 67899999999999
Q ss_pred hhhhhcccccCCCChhHHHHHHHHhc-CCCCCCchhhhhhhcCCCCCCCHHHH-HHHHHHcCCCCccEEEEeecCCchhh
Q 013938 238 DMVAYSQCEYQGLSPTSMQAIEAARG-DRKPWTGEVAHIWRRRGKCPLTPNET-ALILQALSIPTNTNIYLAAGDGLMEI 315 (433)
Q Consensus 238 Dmla~sgC~~~g~~~~e~e~l~~~R~-~~~~w~~~~~~~~R~~G~CPLtPeEv-gl~LralGf~~~T~IYlAaGeg~~~l 315 (433)
|+... |...+ .+. -+. ...||...+- ......|=.+-+++ ..+.+.+-=-+.+.||||+-+.+..+
T Consensus 251 dw~~~--~~~~~--~~~------~~~y~~~H~Rr~d~--~~~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~~~~~~ 318 (408)
T 4ap5_A 251 DWMKM--KVKLG--SAL------GGPYLGVHLRRKDF--IWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEY 318 (408)
T ss_dssp SGGGC--CCCTT--CBC------CEEEEEEEECCTTT--TTTTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECCCHHHH
T ss_pred hHhhh--hcccc--ccc------CCCccccccccccc--hhhhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCCchhHH
Confidence 98763 43111 000 000 0111211110 01112232233333 33333333234558999987766667
Q ss_pred hHHHHhcccccccccCCChhhhccccCCcccceeeEEeecCceeeecCCCchhHHHHHHhhhcCCCc
Q 013938 316 EGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATYFGNMDKMVAAMRAFKGLYK 382 (433)
Q Consensus 316 ~~Lk~~FPnl~tKe~L~s~eeL~~~~s~~~AALDyiV~l~SDvFv~t~~GNfa~~V~GhR~y~G~~k 382 (433)
.-|++.+|.++.-.. ..+++..+.....|.||-+||.+||+||+|..++|+..|.-.|.+.|+..
T Consensus 319 ~~l~~~~~~~~~~~~--~~~~~~~~~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~ 383 (408)
T 4ap5_A 319 EELKKLLPEMVRFEP--TWEELELYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDP 383 (408)
T ss_dssp HHHHHHCTTEECCCC--CHHHHHHHHHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCG
T ss_pred HHHHHhCCCcEEecC--cchhhhccCcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCC
Confidence 889999998754322 24455555556789999999999999999999999999999999999774
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.47 E-value=5.9e-13 Score=133.98 Aligned_cols=277 Identities=21% Similarity=0.345 Sum_probs=162.8
Q ss_pred CCCceEEE-EecCChhhHHHHHHHHHHHHHhhcceeeccccccccccCCC--CCCCccccHHHHHHhccCCcEEe-----
Q 013938 67 KSNGYICV-DCYGGLNQMRRDFCDGVGVAHLLNATLVLPKFEVAAYWNES--SDFADIFEADYFIQHMDGFVKVV----- 138 (433)
Q Consensus 67 ~snGyl~v-~~~GGlnq~R~~IcdaV~vArlLnATLVlP~l~~~s~W~D~--S~F~dIFD~dhFI~sL~~dVrIv----- 138 (433)
.+||||+- .|-|-..||-....-+.+.|+.||.|||||-+-.-.. +.+ -.|++-|+++. |+..-|||
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~-~~~~~vpf~~yF~v~~----l~~yhrvi~me~F 80 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH-PETKMIPFEFLFQVGT----VAKYTRVVTMQEF 80 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS-SSCEEECHHHHBCHHH----HTTTSCEECHHHH
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC-Ccccccchhheeecch----hhhhceeeeHHHH
Confidence 47999988 6999999999999999999999999999998753222 221 25888888875 33334444
Q ss_pred -ccC-----Ccc-----------------------ccCCCccc-------ccccCC--CCh----hch-----HHhhhh-
Q 013938 139 -KEL-----PPE-----------------------ISSKEPFH-------VDCSKR--KGQ----FDY-----VESVLP- 170 (433)
Q Consensus 139 -k~L-----P~~-----------------------~~~~~~~~-------~~~~~~--~s~----~~Y-----~~~vlp- 170 (433)
++| |++ .+..+|+. |+..+. .++ ..| .++-..
T Consensus 81 m~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~~~ 160 (362)
T 3zy2_A 81 TKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWLEK 160 (362)
T ss_dssp HHHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHHHH
T ss_pred HHHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHHHh
Confidence 111 111 11122221 111000 011 111 111111
Q ss_pred -hhhcCceEEEcccccccccCChhHHhHHhHHHhhcccccchHHHHHHHHHHHh-cCCCeeEeecCcchhhhhhcccccC
Q 013938 171 -ALLEHKYISLTPAMSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELLEA-IPKPFLSLHLRFEPDMVAYSQCEYQ 248 (433)
Q Consensus 171 -~l~k~~vi~l~p~~~~l~~~~P~~~q~lRCr~~f~ALrF~~~I~~lg~~lv~r-m~~~yiAlHLR~E~Dmla~sgC~~~ 248 (433)
.-.+|-|+.|+..-. ..|...+. |.-=.-|+++++|.+.|++.++. |.+||||+|||--.|+.-. |.+-
T Consensus 161 ~p~~~~pVlAf~gaPa----~FPv~~e~---r~LqkYm~WS~~i~~~a~~fI~~~L~rpyVgIHLR~G~DW~~a--C~hl 231 (362)
T 3zy2_A 161 FPSEEYPVLAFSSAPA----PFPSKGKV---WSIQKYLRWSSRITEQAKKFISANLAKPFVAVHLRNDADWVRV--CEHI 231 (362)
T ss_dssp SCTTTCSEEEESSCSS----CSSCCGGG---GGGGGGCCBCHHHHHHHHHHHHHHCCSSEEEEEECCCHHHHHH--HHTC
T ss_pred CCcccCceEeecCCCC----CCCcChhh---HhHHHhccccHHHHHHHHHHHHHhcCCCeEEEEEecCCcHHHH--Hhhh
Confidence 122567777763311 12211110 11113599999999999998877 8889999999999999865 7741
Q ss_pred CCC--hh--HHHHHHHHhcCCCCCCchhhhhhhcCCCCCCCHHH----HHHHHHHcCCCCccEEEEeecCCchhhhHHHH
Q 013938 249 GLS--PT--SMQAIEAARGDRKPWTGEVAHIWRRRGKCPLTPNE----TALILQALSIPTNTNIYLAAGDGLMEIEGLTS 320 (433)
Q Consensus 249 g~~--~~--e~e~l~~~R~~~~~w~~~~~~~~R~~G~CPLtPeE----vgl~LralGf~~~T~IYlAaGeg~~~l~~Lk~ 320 (433)
..+ +. +....--+|.....+ ....|==+.++ +...++.++ -..||||+-. ...++-|++
T Consensus 232 k~~~~~~lfaSPQC~Gy~~~~~~l---------t~emClPSle~I~rqIk~~vk~~~---lksVFIATDa-~~~~~ELk~ 298 (362)
T 3zy2_A 232 DTTTNRPLFASEQCLGEGHHLGTL---------TKEICSPSKQQILEQIVEKVGSIG---AKSVFVASDK-DHMIDEINE 298 (362)
T ss_dssp CTTTCCCCTTTHHHHCGGGTTCCC---------CHHHHSCCHHHHHHHHHHHHHHHT---CSEEEEEESS-CCCHHHHHH
T ss_pred ccccCcccccCCcccCCcccCccc---------chhccCCCHHHHHHHHHHHHHhcC---CcEEEEecCC-HHHHHHHHH
Confidence 110 00 000000000000000 01123123333 344555555 4599999954 346788888
Q ss_pred hcccccccccCCChhhhccccCCcccceeeEEeecCceeeecCCCchhHHHHHHhhhcC
Q 013938 321 VYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATYFGNMDKMVAAMRAFKG 379 (433)
Q Consensus 321 ~FPnl~tKe~L~s~eeL~~~~s~~~AALDyiV~l~SDvFv~t~~GNfa~~V~GhR~y~G 379 (433)
.|+..-.+ +. .+.. -.|+||.+||.+||+||+|..++|+..|.-.|--.|
T Consensus 299 ~L~~~~v~--vv------~~~p-e~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 299 ALKPYEIE--AH------RQEP-DDMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp HHGGGTCC--EE------CCSS-CCHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred HhhccCce--EE------EeCC-chhHHHHHHHHhCCEeecCccccccHHHHHHHHhcC
Confidence 88752100 00 0111 178999999999999999999999999999999888
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.58 E-value=0.0013 Score=64.42 Aligned_cols=263 Identities=12% Similarity=0.211 Sum_probs=128.7
Q ss_pred CCceEEEEecCChhhHHHHHHHHHHHHHhhcceeeccccccccccCCCCCCCccccHHHHHHhccC-C-cEEecc-CCcc
Q 013938 68 SNGYICVDCYGGLNQMRRDFCDGVGVAHLLNATLVLPKFEVAAYWNESSDFADIFEADYFIQHMDG-F-VKVVKE-LPPE 144 (433)
Q Consensus 68 snGyl~v~~~GGlnq~R~~IcdaV~vArlLnATLVlP~l~~~s~W~D~S~F~dIFD~dhFI~sL~~-d-VrIvk~-LP~~ 144 (433)
+..||.+...|||.+|--+++.|.++|.+.|.+|+|--.. ..|- ...|.+.| .-.|. ..+. . ..+... .|..
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~--~~~~~~~f-p~~F~-~v~~~~~~~~~~~~~~~~ 77 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYV--EQPFSNAF-PAFFE-PVEDIAGVPVICDDRVNQ 77 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTC--SSTTSBSH-HHHBC-CCSEETTEEEECSGGGGT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccC--CCCccccC-ccccc-chhhhcccceeccccccc
Confidence 4579999999999999999999999999999998876444 2332 23466666 32342 1110 0 011110 0100
Q ss_pred ccCCCccc-ccccCCCChhch--HHhhh------hhhh---cC-ceEEEcccccccccCChhHHhHHhHHHhhcccccch
Q 013938 145 ISSKEPFH-VDCSKRKGQFDY--VESVL------PALL---EH-KYISLTPAMSQRRDRYPRFAKAALCQACYSALRLTR 211 (433)
Q Consensus 145 ~~~~~~~~-~~~~~~~s~~~Y--~~~vl------p~l~---k~-~vi~l~p~~~~l~~~~P~~~q~lRCr~~f~ALrF~~ 211 (433)
..-..+.. --+.+..-...| .+++. ..+. .+ ....+.+.. -+ .+.+.|- .-..-|.-|++++
T Consensus 78 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~-~~---~w~~~~~-~~~~i~~yl~p~~ 152 (330)
T 2hhc_A 78 LSFPGPFFPRWWNRPSIDCINRPDEQIFRERDELTELFQAREDSEANTIVCDA-CL---MWRCSEE-AERLIFRNIKLRS 152 (330)
T ss_dssp CCCCSSEESGGGGSCGGGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEECS-CC---TTSSCHH-HHHHHHHHSCBCH
T ss_pred ccCCCCcCchhhhccccccccChHHhhhhhhhhhhhhhhhhhccCCCeEEccc-cc---ccchhhh-hHHHHHhcCCccH
Confidence 00000000 000000000001 12221 1111 11 101222210 00 0111111 1233457789999
Q ss_pred HHHHHHHHHHHh-cC-CCeeEeecCcchhhhhhcccccCCCChhHHHHHHHHhcCCCCCCchhhhhhhcCCCCCCCHHHH
Q 013938 212 SLQKKAAELLEA-IP-KPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCPLTPNET 289 (433)
Q Consensus 212 ~I~~lg~~lv~r-m~-~~yiAlHLR~E~Dmla~sgC~~~g~~~~e~e~l~~~R~~~~~w~~~~~~~~R~~G~CPLtPeEv 289 (433)
+|++..++..+. +. .++||+|.|.=.+.- .|.+ +. .|.+. .|| -++.
T Consensus 153 ~i~~~i~~~~~~~~~~~~~VGVHIRrgD~~~---~~~~-~~----------------~~~~~---------~~~--l~~~ 201 (330)
T 2hhc_A 153 EIRARIDALYEEHFSGHSIIGVHVRHGNGED---IMEH-AP----------------YWADS---------ELA--LHQV 201 (330)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEEECC--------------------------------CHHH---------HHH--HHHH
T ss_pred HHHHHHHHHHHHhccCCceEEEEEecCCCCc---cccc-Cc----------------chHHH---------hHH--HHHH
Confidence 999999999865 45 599999999643211 1221 10 01000 011 1111
Q ss_pred HHHHHHc-C-CC-CccEEEEeecCCchhhhHHHHhcccccccc-cCCC-h-hhhc----cccCCcccceeeEEeecCcee
Q 013938 290 ALILQAL-S-IP-TNTNIYLAAGDGLMEIEGLTSVYTNVVTKS-ALRT-G-EDFT----RMHGNTKAALDYYVSINSDSY 359 (433)
Q Consensus 290 gl~Lral-G-f~-~~T~IYlAaGeg~~~l~~Lk~~FPnl~tKe-~L~s-~-eeL~----~~~s~~~AALDyiV~l~SDvF 359 (433)
-.-++.+ . .+ .++.||||+-+. ..++-|++.||++.+-. .+.. . ..+- ...+.+.+.+|.+...++|.+
T Consensus 202 ~~~i~~~~~~~~~~~~~vfvaSDd~-~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~Dm~LLS~cd~~ 280 (330)
T 2hhc_A 202 CMAIRKAKALSYPKPVKVFLCTDSA-QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGASALIDMYLLARCATV 280 (330)
T ss_dssp HHHHHHHHTSCCSSCEEEEEEESCH-HHHHHHHHHSTTEECCCC-----------CHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHhccCcCceEEEEEeCCH-HHHHHHHHHcCCcccccceeecccccccccCchhhccchHHHHHHHHHHcCCee
Confidence 1111111 1 12 467999998874 45778999999854321 1110 0 0000 011245688999999999999
Q ss_pred e-ecCCCchhHHHH
Q 013938 360 M-ATYFGNMDKMVA 372 (433)
Q Consensus 360 v-~t~~GNfa~~V~ 372 (433)
| .+..++|+...+
T Consensus 281 I~~~~~STFs~~aa 294 (330)
T 2hhc_A 281 IRFPPTSAFTRYAR 294 (330)
T ss_dssp EEESTTCGGGHHHH
T ss_pred EECCCCCCHHHHHH
Confidence 9 555888888776
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.41 E-value=0.012 Score=62.46 Aligned_cols=250 Identities=14% Similarity=0.117 Sum_probs=138.0
Q ss_pred CCceEEEEe--cCChhhHHHHHHHHHHHHHhhcceeeccccccccccCC-CCCCCccccHHHHHHhccCCcEEeccCCcc
Q 013938 68 SNGYICVDC--YGGLNQMRRDFCDGVGVAHLLNATLVLPKFEVAAYWNE-SSDFADIFEADYFIQHMDGFVKVVKELPPE 144 (433)
Q Consensus 68 snGyl~v~~--~GGlnq~R~~IcdaV~vArlLnATLVlP~l~~~s~W~D-~S~F~dIFD~dhFI~sL~~dVrIvk~LP~~ 144 (433)
+..||.... -.|+..+-..++=|..+|-.+|.|||+-.=. |.- ...|+++|.. +...+... |..
T Consensus 144 ~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P--~s~~C~~~-------~~~ 210 (526)
T 2de0_X 144 KAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP--VSETCTDR-------SGI 210 (526)
T ss_dssp GSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC--SCSSCCCC-------CCS
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC--cCccccCC-------Ccc
Confidence 458999876 5799999999999999999999999994422 332 2467888874 22121111 100
Q ss_pred ccCCCcccccccCCCChhchHHhhhhhhhcCceEEEcccc--cc---cc-cCChhH----HhHHh-------H-HHhhcc
Q 013938 145 ISSKEPFHVDCSKRKGQFDYVESVLPALLEHKYISLTPAM--SQ---RR-DRYPRF----AKAAL-------C-QACYSA 206 (433)
Q Consensus 145 ~~~~~~~~~~~~~~~s~~~Y~~~vlp~l~k~~vi~l~p~~--~~---l~-~~~P~~----~q~lR-------C-r~~f~A 206 (433)
..+.|+... . -.++.||.+.-.+ ++ .. ..+|.. ++++. + .+.-.-
T Consensus 211 ------~~~~w~~~~--~---------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q~~~yl 273 (526)
T 2de0_X 211 ------STGHWSGEV--K---------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYL 273 (526)
T ss_dssp ------CCCBCCCTT--G---------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred ------ccCCCCCcc--c---------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHHHHHHHH
Confidence 001111110 0 0122222211000 00 00 012222 11111 1 111135
Q ss_pred cccchHHHHHHHHHHHhc--CCCeeEeecCcchhhhhhcccccCCCChhHHHHHHHHhcCCCCCCchhhhhhhcCCCCCC
Q 013938 207 LRLTRSLQKKAAELLEAI--PKPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCPL 284 (433)
Q Consensus 207 LrF~~~I~~lg~~lv~rm--~~~yiAlHLR~E~Dmla~sgC~~~g~~~~e~e~l~~~R~~~~~w~~~~~~~~R~~G~CPL 284 (433)
+|++++|++..+++.+++ .+|.|++|.|-- |-...-. .|... .+.++.+
T Consensus 274 ~rP~~~i~~~I~~~~~~l~~~~piVGVHIRrG-Dk~~~E~-~~~~~-~~Y~~~v-------------------------- 324 (526)
T 2de0_X 274 IRPQPWLEKEIEEATKKLGFKHPVIGVHVRRT-DKVGTEA-AFHPI-EEYMVHV-------------------------- 324 (526)
T ss_dssp TCBCHHHHHHHHHHHHHHTCCSSEEEEEECCC------CC-CSCSH-HHHHHHH--------------------------
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCEEEEEEeCC-CCCcccc-ccCCH-HHHHHHH--------------------------
Confidence 899999999999999886 689999999952 2211100 01011 1111111
Q ss_pred CHHHHHHHHHHcCCCCccEEEEeecCCchhhhHHHHhcccc--cccccCCChhhhc-cc--cCCcccceeeEEeecCcee
Q 013938 285 TPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNV--VTKSALRTGEDFT-RM--HGNTKAALDYYVSINSDSY 359 (433)
Q Consensus 285 tPeEvgl~LralGf~~~T~IYlAaGeg~~~l~~Lk~~FPnl--~tKe~L~s~eeL~-~~--~s~~~AALDyiV~l~SDvF 359 (433)
++.-..|+....+..+.||||+.+. ..++-+++.||+. ++-........+. .. .+...+.+|.++.+++|+|
T Consensus 325 --~~~~~~l~~~~~~~~~~ifLATDDp-~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~cd~~ 401 (526)
T 2de0_X 325 --EEHFQLLARRMQVDKKRVYLATDDP-SLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFL 401 (526)
T ss_dssp --HHHHHHHHTTSCCSSCEEEEEESCH-HHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHSSEE
T ss_pred --HHHHHHHHhhcCCCCCeEEEEcCCH-HHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhcCCee
Confidence 1111123333567889999998763 4566778889985 3322221111111 11 1124578999999999999
Q ss_pred eecCCCchhHHHHHHhhhcC
Q 013938 360 MATYFGNMDKMVAAMRAFKG 379 (433)
Q Consensus 360 v~t~~GNfa~~V~GhR~y~G 379 (433)
|+|.++|+++++...|.-.+
T Consensus 402 Vgt~sS~~srla~~l~~~~~ 421 (526)
T 2de0_X 402 VCTFSSQVCRVAYEIMQTLH 421 (526)
T ss_dssp EECTTSHHHHHHHHHHTTSS
T ss_pred ecCCCCHHHHHHHHHhcCcC
Confidence 99999999999998876544
No 5
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=44.97 E-value=3.3 Score=31.05 Aligned_cols=38 Identities=11% Similarity=0.193 Sum_probs=22.8
Q ss_pred hhhhHHHHhcccccccccCCChhhhccccCCcccceeeEEe
Q 013938 313 MEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVS 353 (433)
Q Consensus 313 ~~l~~Lk~~FPnl~tKe~L~s~eeL~~~~s~~~AALDyiV~ 353 (433)
..++.|++|||++ ++|-+ .+=+....++..+|||-...
T Consensus 14 ~~~~~L~~MFP~l-D~evI--~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 14 DTLNTLQNMFPDM-DPSLI--EDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHSTTS-CHHHH--HHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHcccC-CHHHH--HHHHHHcCCCHHHHHHHHHh
Confidence 4578999999998 55544 12344567888899987654
No 6
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=44.37 E-value=1.6 Score=33.17 Aligned_cols=49 Identities=10% Similarity=0.283 Sum_probs=33.8
Q ss_pred chhhhHHHHhcccccccccCCChhhhccccCCcccceeeEEeecCceeeecC
Q 013938 312 LMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATY 363 (433)
Q Consensus 312 ~~~l~~Lk~~FPnl~tKe~L~s~eeL~~~~s~~~AALDyiV~l~SDvFv~t~ 363 (433)
+..++-|+++||++ +++.+ ..-|....++..+|||-+..+..+-|=|+.
T Consensus 10 ee~l~~L~emFP~l-d~~~I--~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFPNM-DQEVI--RSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSS-CHHHH--HHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCC-CHHHH--HHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 56788999999998 44433 112445567888999888777776665543
No 7
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.87 E-value=6.5 Score=30.56 Aligned_cols=39 Identities=10% Similarity=0.234 Sum_probs=25.1
Q ss_pred chhhhHHHHhcccccccccCCChhhhccccCCcccceeeEEe
Q 013938 312 LMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVS 353 (433)
Q Consensus 312 ~~~l~~Lk~~FPnl~tKe~L~s~eeL~~~~s~~~AALDyiV~ 353 (433)
+..++-|++|||++ +++.| +.-|....++..+|||-+..
T Consensus 19 ~~~v~~L~~MFP~l-D~~vI--~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 19 NQAMDDFKTMFPNM-DYDII--ECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp HHHHHHHHHHCSSS-CHHHH--HHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHH--HHHHHHcCCCHHHHHHHHHh
Confidence 45688999999998 44443 12344456677777775443
No 8
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=22.62 E-value=49 Score=29.03 Aligned_cols=98 Identities=13% Similarity=0.182 Sum_probs=55.7
Q ss_pred eEeecCcchhhhhhcccccCCCC-----hhHHHHHHHHhcCCCCCCchhhhhhhcCCCCC-CCHHHH-HHHHHHcCCCCc
Q 013938 229 LSLHLRFEPDMVAYSQCEYQGLS-----PTSMQAIEAARGDRKPWTGEVAHIWRRRGKCP-LTPNET-ALILQALSIPTN 301 (433)
Q Consensus 229 iAlHLR~E~Dmla~sgC~~~g~~-----~~e~e~l~~~R~~~~~w~~~~~~~~R~~G~CP-LtPeEv-gl~LralGf~~~ 301 (433)
++--++.+.. -.|+||...+.+ =+|.-++.++-.. ..+.-+.-......+. | ++|=-. --+|..+| .+
T Consensus 38 VGAal~~~dG-~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~~~-~~~~PCG~Crq~l~E~~--~~ 112 (146)
T 2fr5_A 38 VGAALLTGDG-RIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDLQE-EFISPCGACRQVMREFG--TD 112 (146)
T ss_dssp EEEEEEETTS-CEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCSS-SCCCCCHHHHHHHHHTC--SS
T ss_pred EEEEEEeCCC-cEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCCCC-cccCCCHHHHHHHHHhC--CC
Confidence 6667776654 456788743322 2455555544321 1111110000011111 3 444333 35777777 78
Q ss_pred cEEEEeecCCchhhhHHHHhcccccccccC
Q 013938 302 TNIYLAAGDGLMEIEGLTSVYTNVVTKSAL 331 (433)
Q Consensus 302 T~IYlAaGeg~~~l~~Lk~~FPnl~tKe~L 331 (433)
+.||++..+|.....+|+++.|.-++.++|
T Consensus 113 ~~v~~~~~~g~~~~~~l~eLLP~~F~~~~l 142 (146)
T 2fr5_A 113 WAVYMTKPDGTFVVRTVQELLPASFGPEDL 142 (146)
T ss_dssp CEEEEECTTSCEEEEEHHHHSTTCCCGGGG
T ss_pred CEEEEECCCCCEEEEEHHHhCCCCCChHHH
Confidence 999999888765566899999998888776
No 9
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=21.04 E-value=89 Score=26.69 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHHHcCCCCccEEEEeecC
Q 013938 281 KCPLTPNETALILQALSIPTNTNIYLAAGD 310 (433)
Q Consensus 281 ~CPLtPeEvgl~LralGf~~~T~IYlAaGe 310 (433)
.||||+||+...|+.+--+.+ ..||....
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i~r 45 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeeehh
Confidence 699999999999999885553 56666554
No 10
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=19.38 E-value=43 Score=28.59 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHcCCCCcc
Q 013938 284 LTPNETALILQALSIPTNT 302 (433)
Q Consensus 284 LtPeEvgl~LralGf~~~T 302 (433)
|-|.||+.+|...||..+.
T Consensus 3 LRPDEVArVLEk~GF~~D~ 21 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV 21 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 6799999999999998554
Done!