Query 013938
Match_columns 433
No_of_seqs 173 out of 416
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 19:54:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013938.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013938hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wgla_ a.5.2.4 (A:) Toll-inte 61.9 0.28 2E-05 35.8 -2.5 52 309-363 7-58 (59)
2 d1l5ia_ d.89.1.4 (A:) DNA-bind 32.3 21 0.0015 28.6 4.2 29 281-310 17-45 (118)
3 d2ihoa2 d.3.1.18 (A:156-293) A 31.8 3.5 0.00025 33.8 -0.7 36 100-135 31-71 (138)
4 d1f54a_ a.39.1.5 (A:) Calmodul 24.8 32 0.0023 24.0 3.7 16 284-299 27-42 (77)
5 d2fr5a1 c.97.1.1 (A:11-146) mo 23.9 17 0.0012 29.4 2.2 40 291-332 94-133 (136)
6 d2g7ja1 d.198.5.1 (A:1-112) Pu 20.8 20 0.0014 28.1 1.9 18 284-301 3-20 (112)
7 d1uwza_ c.97.1.1 (A:) mono-dom 20.7 27 0.002 27.8 2.8 40 291-331 91-130 (130)
8 d1vjna_ d.157.1.4 (A:) Hypothe 20.1 58 0.0042 27.2 5.1 43 86-133 142-184 (209)
9 d1oqya2 a.5.2.1 (A:317-360) DN 18.0 8.2 0.0006 26.1 -0.9 27 285-311 1-31 (44)
10 d2nyga1 c.140.1.2 (A:2-271) Un 17.9 40 0.0029 30.1 3.6 54 67-126 27-104 (270)
No 1
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.87 E-value=0.28 Score=35.77 Aligned_cols=52 Identities=12% Similarity=0.291 Sum_probs=34.8
Q ss_pred cCCchhhhHHHHhcccccccccCCChhhhccccCCcccceeeEEeecCceeeecC
Q 013938 309 GDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATY 363 (433)
Q Consensus 309 Geg~~~l~~Lk~~FPnl~tKe~L~s~eeL~~~~s~~~AALDyiV~l~SDvFv~t~ 363 (433)
|..+..++.|++|||++ +++.+ ..=|....++..+|+|=+.-..-+.|-|+.
T Consensus 7 ~~~Ee~i~~LkeMFP~~-D~~vI--~~VL~a~~G~vd~aid~LL~Msd~~~gp~s 58 (59)
T d1wgla_ 7 GCSEEDLKAIQDMFPNM-DQEVI--RSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp SSCHHHHHHHHHHCSSS-CHHHH--HHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred cCcHHHHHHHHHHCCCC-CHHHH--HHHHHHcCCCHHHHHHHHHhcCCCCcCCCC
Confidence 33567799999999998 44433 113445577888888877666666665543
No 2
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=32.32 E-value=21 Score=28.60 Aligned_cols=29 Identities=28% Similarity=0.511 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHHHcCCCCccEEEEeecC
Q 013938 281 KCPLTPNETALILQALSIPTNTNIYLAAGD 310 (433)
Q Consensus 281 ~CPLtPeEvgl~LralGf~~~T~IYlAaGe 310 (433)
+|||||||+...|+.|--+.+. .||..+.
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~r 45 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEcc
Confidence 6999999999999999776655 4666554
No 3
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=31.77 E-value=3.5 Score=33.76 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=29.7
Q ss_pred eeeccccccccccCCC-----CCCCccccHHHHHHhccCCc
Q 013938 100 TLVLPKFEVAAYWNES-----SDFADIFEADYFIQHMDGFV 135 (433)
Q Consensus 100 TLVlP~l~~~s~W~D~-----S~F~dIFD~dhFI~sL~~dV 135 (433)
=||||...-+++|+++ .-=+.|||-|.|--..+.-|
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 3999999999999985 35578999999988776544
No 4
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.77 E-value=32 Score=24.03 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=10.4
Q ss_pred CCHHHHHHHHHHcCCC
Q 013938 284 LTPNETALILQALSIP 299 (433)
Q Consensus 284 LtPeEvgl~LralGf~ 299 (433)
++++|...+|+.+|+.
T Consensus 27 I~~~el~~~l~~~g~~ 42 (77)
T d1f54a_ 27 ISSSELATVMRSLGLS 42 (77)
T ss_dssp EEHHHHHHHHHHHTCC
T ss_pred EChHHHHHHHHHhCCC
Confidence 5666666666666665
No 5
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.88 E-value=17 Score=29.43 Aligned_cols=40 Identities=13% Similarity=0.317 Sum_probs=32.0
Q ss_pred HHHHHcCCCCccEEEEeecCCchhhhHHHHhcccccccccCC
Q 013938 291 LILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALR 332 (433)
Q Consensus 291 l~LralGf~~~T~IYlAaGeg~~~l~~Lk~~FPnl~tKe~L~ 332 (433)
.+|..+ ..++.||+...+|......|+++.|.-+++++|=
T Consensus 94 Q~l~E~--~~~~~i~~~~~~~~~~~~tl~eLLP~~F~~~~L~ 133 (136)
T d2fr5a1 94 QVMREF--GTDWAVYMTKPDGTFVVRTVQELLPASFGPEDLQ 133 (136)
T ss_dssp HHHHHT--CSSCEEEEECTTSCEEEEEHHHHSTTCCCGGGGT
T ss_pred HHHHhh--CCCceEEEECCCCCEEEeEHHHhCcCCCChHHhC
Confidence 455664 4688999998888766778999999999998873
No 6
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=20.80 E-value=20 Score=28.10 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHcCCCCc
Q 013938 284 LTPNETALILQALSIPTN 301 (433)
Q Consensus 284 LtPeEvgl~LralGf~~~ 301 (433)
|-|.||+.+|+..||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 679999999999999754
No 7
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]}
Probab=20.65 E-value=27 Score=27.82 Aligned_cols=40 Identities=10% Similarity=0.200 Sum_probs=30.4
Q ss_pred HHHHHcCCCCccEEEEeecCCchhhhHHHHhcccccccccC
Q 013938 291 LILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSAL 331 (433)
Q Consensus 291 l~LralGf~~~T~IYlAaGeg~~~l~~Lk~~FPnl~tKe~L 331 (433)
.+|..++ +.++.||+...+|+.....|+++.|.=+++++|
T Consensus 91 Q~l~E~~-~~~~~i~l~~~~g~~~~~~l~eLLP~~F~~~dL 130 (130)
T d1uwza_ 91 QVISELC-TKDVIVVLTNLQGQIKEMTVEELLPGAFSSEDL 130 (130)
T ss_dssp HHHHHHS-CTTCEEEEECSSSCEEEEEHHHHSTTCCCGGGC
T ss_pred HHHHHhC-CCCcEEEEECCCCCEEEEEHHHhCcCCCCcccC
Confidence 3455553 468999999998764445799999999988876
No 8
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=20.11 E-value=58 Score=27.22 Aligned_cols=43 Identities=28% Similarity=0.481 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhcceeeccccccccccCCCCCCCccccHHHHHHhccC
Q 013938 86 DFCDGVGVAHLLNATLVLPKFEVAAYWNESSDFADIFEADYFIQHMDG 133 (433)
Q Consensus 86 ~IcdaV~vArlLnATLVlP~l~~~s~W~D~S~F~dIFD~dhFI~sL~~ 133 (433)
.--+|+.+|+.|++-.|||- .|+.....| ++=.+|.|++.++.
T Consensus 142 ~~~ea~~~~~~l~pk~viP~----H~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 142 GPKEAKEVADLLNAKVIIPM----HYKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp CHHHHHHHHHHTTCSEEEEE----SCCCSSCCT-TCCCTHHHHTTSSC
T ss_pred CHHHHHHHHHHhCCCEEEEe----ccCCccccc-CcCCHHHHHHHhhh
Confidence 45689999999999999994 233322333 35567888888763
No 9
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.03 E-value=8.2 Score=26.12 Aligned_cols=27 Identities=33% Similarity=0.488 Sum_probs=18.8
Q ss_pred CHHHHH--HHHHHcCCCCccE--EEEeecCC
Q 013938 285 TPNETA--LILQALSIPTNTN--IYLAAGDG 311 (433)
Q Consensus 285 tPeEvg--l~LralGf~~~T~--IYlAaGeg 311 (433)
||+|.. .=|.+|||+++.. +|+|-.+.
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdKN 31 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEKN 31 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSSC
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCcC
Confidence 444443 3478999999884 68887764
No 10
>d2nyga1 c.140.1.2 (A:2-271) Uncharacterized protein YokD {Bacillus subtilis [TaxId: 1423]}
Probab=17.92 E-value=40 Score=30.11 Aligned_cols=54 Identities=20% Similarity=0.376 Sum_probs=0.0
Q ss_pred CCCceEEEEec--------CChhhHHHHHHHHHHHHHhhcceeeccccccccccCCCCCCCc----------------cc
Q 013938 67 KSNGYICVDCY--------GGLNQMRRDFCDGVGVAHLLNATLVLPKFEVAAYWNESSDFAD----------------IF 122 (433)
Q Consensus 67 ~snGyl~v~~~--------GGlnq~R~~IcdaV~vArlLnATLVlP~l~~~s~W~D~S~F~d----------------IF 122 (433)
+...-|+|+++ ||+..+..++-|.|. -+.|||||.+-.+.. |+..+.+ +|
T Consensus 27 ~kgd~v~vHssl~~lg~~~~~~~~~i~aL~~~vG----~~GTLvmPtft~~~~--~~~~~~~~~~~~~~~~~~r~~~p~F 100 (270)
T d2nyga1 27 KKGMTVLVHSSLSSIGWVNGGAVAVIQALIDVVT----EEGTIVMPSQSVELS--DPKEWGNPPVPEEWWDIIRESMPAY 100 (270)
T ss_dssp CTTCEEEEEECSGGGCCBTTHHHHHHHHHHHHHT----TTSEEEEECCCTTSS--CGGGCCSSCCCGGGTTHHHHSCCCC
T ss_pred CCcCEEEEEcChHHhCCcCCCHHHHHHHHHHHhC----CCceEEEEecccCCC--ChhhhcCCCCcHHHHHHHHhcCCCc
Q ss_pred cHHH
Q 013938 123 EADY 126 (433)
Q Consensus 123 D~dh 126 (433)
|.++
T Consensus 101 d~~~ 104 (270)
T d2nyga1 101 NSNY 104 (270)
T ss_dssp CTTT
T ss_pred Cccc
Done!