BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013939
(433 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GZA4|CBSX6_ARATH CBS domain-containing protein CBSX6 OS=Arabidopsis thaliana
GN=CBSX6 PE=1 SV=1
Length = 425
Score = 603 bits (1556), Expect = e-172, Method: Compositional matrix adjust.
Identities = 321/437 (73%), Positives = 364/437 (83%), Gaps = 16/437 (3%)
Query: 1 MASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHV---GIIE 57
MASVF+YHVVGDLTVGKPE+ EFYETETVE+AI+AIGESTECGIPVW+K+T G +E
Sbjct: 1 MASVFLYHVVGDLTVGKPEMVEFYETETVESAIRAIGESTECGIPVWRKRTTPSLPGFVE 60
Query: 58 NGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLI 117
N EMRQQRFVGILNS DIVAFLAK++CL++ +KAMK PVS+V+ P+N+LLKQVDPGTRLI
Sbjct: 61 NSEMRQQRFVGILNSLDIVAFLAKTECLQE-EKAMKIPVSEVVSPDNTLLKQVDPGTRLI 119
Query: 118 DALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSS 177
DALEMMKQGVRRLLVPKSVVW+GMSKRFSILYNGKWLKN + S+SSS + NRP++S
Sbjct: 120 DALEMMKQGVRRLLVPKSVVWRGMSKRFSILYNGKWLKNSENSSSSSGLSADSTNRPTTS 179
Query: 178 STTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATL 237
T+S RDKFCCLSREDVIRFLIG LGALAPLPL+SIS+LG+IN NY+ IEAS+PAIEAT
Sbjct: 180 MTSS-RDKFCCLSREDVIRFLIGVLGALAPLPLTSISTLGIINQNYNFIEASLPAIEATR 238
Query: 238 KAPGDPSAIAVLEPT-SEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV 296
+ DPSAIAVLE T +E Q+KIIGEISASKLWKCDYLAAAWALANL AGQFVMGVEDN+
Sbjct: 239 RPLCDPSAIAVLEQTENEQQFKIIGEISASKLWKCDYLAAAWALANLYAGQFVMGVEDNM 298
Query: 297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMY 356
+ RSF D+ S NG +T +KF SRSIGFNP+SP GRSMY
Sbjct: 299 SSRSFSDFLQTSF--PGGEQNGT-ATNAKKFSSRSIGFNPTSPT-------RLSIGRSMY 348
Query: 357 RGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAA 416
RGRS PLTCK +SSLAAVMAQMLSHRATHVWVTE +SDDVLVGVVGY +IL AVTKQP+A
Sbjct: 349 RGRSAPLTCKTSSSLAAVMAQMLSHRATHVWVTEADSDDVLVGVVGYGEILTAVTKQPSA 408
Query: 417 LTPANRTYEGFATEIQS 433
P+NR+YEGF E QS
Sbjct: 409 FVPSNRSYEGFGNENQS 425
>sp|Q84WQ5|CBSX5_ARATH CBS domain-containing protein CBSX5 OS=Arabidopsis thaliana
GN=CBSX5 PE=2 SV=2
Length = 391
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 112/420 (26%), Positives = 189/420 (45%), Gaps = 53/420 (12%)
Query: 1 MASVFIYHVVGDLTVGKPELAEFYETETVEA-AIKAIGESTECGIPVWKKKTHVGIIENG 59
MA + + V DL +GKP L + + + AI A+ S + + VW ++
Sbjct: 1 MALSLLSYNVSDLCLGKPPLRCLSSSSSSVSDAIAALKSSEDTFLSVWNCNH-----DDD 55
Query: 60 EMRQQRFVGILNSFDIVAFLAKSDCLEDQDK---AMKTPVSQVIVPNNSLLKQVDPGTRL 116
+ +G ++ D++ L+K D D A+ + VS ++ S++ V P L
Sbjct: 56 NNTECECLGKISMADVICHLSK-----DHDHSLCALNSSVSVLLPKTRSIVLHVQPSCSL 110
Query: 117 IDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSS 176
I+A++++ +G + L+VP ++ + K N N +
Sbjct: 111 IEAIDLIIKGAQNLIVP--------------IHTKPYTKKKQH----------NDNVSVT 146
Query: 177 SSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEAS-----VP 231
++T S +FC +++ED+I+FL+G + A +PLP S+S LGVIN ++ +
Sbjct: 147 TTTHSNGQRFCWITQEDIIQFLLGFIAAFSPLPAMSLSDLGVINSTHTVVAVDYHSSASA 206
Query: 232 AIEATLKAPGDPSAIAVLEPTSEDQY-KIIGEISASKLWKCDYLAAAWALANLSAGQFVM 290
+ A A +++AV++ +D + +IGEIS L CD AA A+A LSAG +
Sbjct: 207 VVSAVSNALAVQTSVAVVDGEGDDPFTSLIGEISPMTLTCCDE-TAAAAVATLSAGDLMA 265
Query: 291 GVEDNVTPRSFPDYSANSTLRENNTVNGVGS---TRPRKFCSRSIGFNPSSPCLAASRSP 347
++ P S N E+ + G+ S + S +P S
Sbjct: 266 YIDGANPPESLVQIVRNRL--EDKGLIGLMSLFDSLSSYSTSSGYSSEEEAPVRTTSYGR 323
Query: 348 SFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADIL 407
S + M R +S + C SSL AVM Q ++HR + WV E D VG+V + DIL
Sbjct: 324 SMSSSARMAR-KSEAIVCNPKSSLMAVMIQAVAHRVNYAWVV--EKDGCFVGMVTFVDIL 380
>sp|Q8GXI9|PV42B_ARATH SNF1-related protein kinase regulatory subunit gamma-like PV42b
OS=Arabidopsis thaliana GN=PV42B PE=2 SV=1
Length = 357
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 93/424 (21%), Positives = 164/424 (38%), Gaps = 113/424 (26%)
Query: 10 VGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPV------WKKKTHVGIIE----NG 59
V DL + K L E + T+ A+ + + +PV W I+E +G
Sbjct: 12 VKDLMIDKRRLVEVPDNATLGDALNTMVANRVRAVPVAAKPGQWLGAGGSMIVELDKQSG 71
Query: 60 EMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVI--VPNNSLLKQVDPGTRLI 117
R+Q ++G++ D+VA +A D DK M PVS +I P L ++P T ++
Sbjct: 72 SARKQ-YIGMVTMLDVVAHIAGDDGESGLDKKMAAPVSSIIGHCPEGLSLWSLNPNTSIM 130
Query: 118 DALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSS 177
D +EM+ +G+ R+LVP +S++ N+ S+S
Sbjct: 131 DCMEMLSKGIHRVLVPL--------------------------DSNTENITGPELVESAS 164
Query: 178 STTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEAT- 236
+ + LS+ D+I F L + +++ L I+ ++ + +A
Sbjct: 165 A-------YAMLSQMDLISFFFDQSSQLHGILSHTVTDLSAIHNTVLALTSQARVKDAIQ 217
Query: 237 LKAPGDPSAIAVLEPTSEDQ----------YKIIGEISASKLWKCDYLAAAWALANLSAG 286
+ +A+ ++E + E + +++G SAS L C +LA + L+A
Sbjct: 218 CMSIAMLNAVPIVEASGEGEDHKQLVDGKNRRVVGTFSASDLKGC-HLATLRSWLPLNAL 276
Query: 287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRS 346
+FV + PR+ +A ST
Sbjct: 277 EFVEKI-----PRTLLFTAATST------------------------------------- 294
Query: 347 PSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADI 406
GR + +TC +TS+LA V+ + + R VWV + L G+V DI
Sbjct: 295 ----PGREL-------VTCHVTSTLAQVIHMVTTKRVHRVWVVDQNGG--LQGLVSLTDI 341
Query: 407 LVAV 410
+ V
Sbjct: 342 IAVV 345
>sp|Q9XI37|PV42A_ARATH SNF1-related protein kinase regulatory subunit gamma-like PV42a
OS=Arabidopsis thaliana GN=PV42A PE=1 SV=1
Length = 352
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 118/290 (40%), Gaps = 65/290 (22%)
Query: 12 DLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTH-VG-----IIENGEMR--- 62
DLTV L E T T+ A+ + ++ +PV H +G I+E+ +
Sbjct: 20 DLTVRNRRLVEVPYTATLSHAMNTLVANSISALPVAAPPGHWIGAGGSMIMESDKQTGVV 79
Query: 63 QQRFVGILNSFDIVAFLAKSDC-LEDQDKAMKTPVSQVI--VPNNSLLKQVDPGTRLIDA 119
++ ++GIL DI+A +A D L D D+ M + VS +I L ++P T +++
Sbjct: 80 RKHYIGILTMLDILAHIAGEDSNLSDLDRKMSSQVSSIIGHCLEGLSLWTLNPNTSVLEC 139
Query: 120 LEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSST 179
+E+ +G+ R LVP S+ SNN IA S+S
Sbjct: 140 MEVFSKGIHRALVPVE------------------------SSIESNNTIAGVELIESASA 175
Query: 180 TSVRDKFCCLSREDVIRFLIG-CLGALAPLPLSSISSLGVINPNYSSIEA---------- 228
+ L++ D++RFL L + SIS LG +N + +I
Sbjct: 176 ------YKMLTQMDLLRFLKDHHFDDLKTVLSRSISDLGAVNDSVYAITERTTVSNAINV 229
Query: 229 -------SVPAIEATLKAPGDPSAIAVLEPTSEDQYKIIGEISASKLWKC 271
+VP + A A D L+ + K+IG SA+ L C
Sbjct: 230 MKGALLNAVPIVHAPDIAQEDH-----LQLVNGRHRKVIGTFSATDLKGC 274
>sp|A0Q0A4|DXS_CLONN 1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium novyi
(strain NT) GN=dxs PE=3 SV=1
Length = 623
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 104 NSLLKQVDPGTRLIDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSS 163
N +L++ + GT + D+L +K G++++LVP + ++ M ++ +G +K + ++
Sbjct: 207 NDVLRKTNIGTGVADSLSKLKSGIKQMLVP-GMFFEEMGIKYLGPIDGHNIKELTEVINT 265
Query: 164 SNNLIANANRPSSSSTTSVRDKFCCLSREDVIRF 197
+ NL N P T + + K + +D RF
Sbjct: 266 AKNL----NGPVLIHTITQKGKGYKFAEKDPNRF 295
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,445,136
Number of Sequences: 539616
Number of extensions: 6532514
Number of successful extensions: 18585
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 18567
Number of HSP's gapped (non-prelim): 11
length of query: 433
length of database: 191,569,459
effective HSP length: 120
effective length of query: 313
effective length of database: 126,815,539
effective search space: 39693263707
effective search space used: 39693263707
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)