Query 013939
Match_columns 433
No_of_seqs 159 out of 1043
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:54:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764 5'-AMP-activated prote 100.0 1.4E-31 3.1E-36 274.5 21.4 301 3-430 61-378 (381)
2 COG2524 Predicted transcriptio 99.7 2.9E-16 6.3E-21 150.5 13.0 120 7-199 171-291 (294)
3 COG2524 Predicted transcriptio 99.7 2.7E-16 5.7E-21 150.8 9.6 128 203-412 164-292 (294)
4 cd04618 CBS_pair_5 The CBS dom 99.6 1.3E-14 2.8E-19 120.9 10.7 94 222-408 2-97 (98)
5 COG3620 Predicted transcriptio 99.6 2.3E-14 4.9E-19 128.8 11.5 120 9-200 66-185 (187)
6 cd04641 CBS_pair_28 The CBS do 99.6 2.9E-14 6.3E-19 121.3 10.9 118 221-408 1-119 (120)
7 COG3448 CBS-domain-containing 99.5 4.2E-14 9.2E-19 138.0 9.9 125 217-413 249-374 (382)
8 cd04603 CBS_pair_KefB_assoc Th 99.5 1.2E-13 2.6E-18 116.2 10.8 108 222-408 2-110 (111)
9 cd04614 CBS_pair_1 The CBS dom 99.5 2E-13 4.3E-18 112.9 10.6 94 222-409 2-96 (96)
10 COG3448 CBS-domain-containing 99.5 1.7E-13 3.8E-18 133.7 10.7 132 4-200 241-373 (382)
11 cd04642 CBS_pair_29 The CBS do 99.5 3.8E-13 8.3E-18 115.5 10.4 124 222-409 2-126 (126)
12 cd04619 CBS_pair_6 The CBS dom 99.5 4.9E-13 1.1E-17 112.9 10.4 110 223-408 3-113 (114)
13 cd04618 CBS_pair_5 The CBS dom 99.4 7.2E-13 1.6E-17 110.3 11.1 80 19-136 2-82 (98)
14 PRK14869 putative manganese-de 99.4 2.4E-13 5.2E-18 146.2 9.4 285 8-409 68-391 (546)
15 PRK10892 D-arabinose 5-phospha 99.4 5.2E-13 1.1E-17 134.4 10.9 118 212-409 203-323 (326)
16 cd04641 CBS_pair_28 The CBS do 99.4 1.4E-12 3E-17 110.9 11.9 97 18-135 1-104 (120)
17 COG2905 Predicted signal-trans 99.4 5.3E-13 1.1E-17 139.9 8.7 120 218-415 154-274 (610)
18 PRK07807 inosine 5-monophospha 99.4 2E-12 4.4E-17 136.8 13.2 115 218-415 94-209 (479)
19 cd04617 CBS_pair_4 The CBS dom 99.4 1.8E-12 3.8E-17 110.1 10.3 112 222-408 2-117 (118)
20 cd04627 CBS_pair_14 The CBS do 99.4 4.5E-12 9.7E-17 108.3 12.2 117 222-406 2-120 (123)
21 cd04608 CBS_pair_PALP_assoc Th 99.4 6.4E-13 1.4E-17 114.9 6.9 113 221-410 2-124 (124)
22 cd04630 CBS_pair_17 The CBS do 99.4 2.5E-12 5.4E-17 108.2 10.0 111 222-409 2-114 (114)
23 cd04600 CBS_pair_HPP_assoc Thi 99.4 3.6E-12 7.7E-17 108.3 10.5 122 221-409 2-124 (124)
24 cd04801 CBS_pair_M50_like This 99.4 3.7E-12 8E-17 107.0 10.2 110 222-408 2-113 (114)
25 cd04593 CBS_pair_EriC_assoc_ba 99.4 5E-12 1.1E-16 106.3 10.7 113 222-409 2-115 (115)
26 PRK10892 D-arabinose 5-phospha 99.4 8.9E-12 1.9E-16 125.5 14.0 107 6-134 200-307 (326)
27 COG3620 Predicted transcriptio 99.4 3.8E-12 8.2E-17 114.6 9.9 134 192-412 51-185 (187)
28 cd04603 CBS_pair_KefB_assoc Th 99.4 9.1E-12 2E-16 104.7 11.7 93 19-135 2-95 (111)
29 cd04608 CBS_pair_PALP_assoc Th 99.3 4.6E-12 1E-16 109.5 10.1 85 18-124 2-86 (124)
30 cd04627 CBS_pair_14 The CBS do 99.3 7.8E-12 1.7E-16 106.7 11.3 116 106-270 2-122 (123)
31 cd04632 CBS_pair_19 The CBS do 99.3 9E-12 2E-16 106.9 11.7 125 222-408 2-127 (128)
32 cd04590 CBS_pair_CorC_HlyC_ass 99.3 7.8E-12 1.7E-16 104.2 10.7 107 222-408 2-110 (111)
33 cd04596 CBS_pair_DRTGG_assoc T 99.3 1.1E-11 2.4E-16 103.3 11.2 104 222-408 3-107 (108)
34 PRK11543 gutQ D-arabinose 5-ph 99.3 4.6E-12 1E-16 127.1 10.6 120 210-409 196-318 (321)
35 cd04643 CBS_pair_30 The CBS do 99.3 8.6E-12 1.9E-16 104.5 10.4 114 222-409 2-116 (116)
36 COG2905 Predicted signal-trans 99.3 4.8E-12 1E-16 132.8 10.4 128 3-201 144-272 (610)
37 cd04582 CBS_pair_ABC_OpuCA_ass 99.3 1.6E-11 3.4E-16 101.5 11.5 103 222-408 2-105 (106)
38 cd04631 CBS_pair_18 The CBS do 99.3 1.1E-11 2.5E-16 105.3 10.4 123 221-409 1-125 (125)
39 cd04615 CBS_pair_2 The CBS dom 99.3 2E-11 4.3E-16 102.0 11.6 110 222-408 2-112 (113)
40 cd04619 CBS_pair_6 The CBS dom 99.3 2.5E-11 5.4E-16 102.4 12.1 95 20-135 3-98 (114)
41 cd04617 CBS_pair_4 The CBS dom 99.3 2.7E-11 5.9E-16 102.8 12.3 98 19-136 2-100 (118)
42 cd04623 CBS_pair_10 The CBS do 99.3 1.7E-11 3.7E-16 101.9 10.6 110 222-408 2-112 (113)
43 cd04630 CBS_pair_17 The CBS do 99.3 3E-11 6.4E-16 101.6 12.2 98 18-135 1-99 (114)
44 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 1.8E-11 3.9E-16 129.5 12.9 114 218-415 93-207 (475)
45 cd04605 CBS_pair_MET2_assoc Th 99.3 3.5E-11 7.5E-16 100.1 12.0 107 221-408 2-109 (110)
46 COG0517 FOG: CBS domain [Gener 99.3 2.2E-11 4.7E-16 102.0 10.8 111 218-407 4-117 (117)
47 PRK14869 putative manganese-de 99.3 7.7E-11 1.7E-15 126.8 17.9 191 93-412 67-305 (546)
48 cd04621 CBS_pair_8 The CBS dom 99.3 1.6E-11 3.5E-16 107.8 10.3 132 222-408 2-134 (135)
49 cd04629 CBS_pair_16 The CBS do 99.3 1.7E-11 3.7E-16 102.4 10.0 112 222-409 2-114 (114)
50 cd04607 CBS_pair_NTP_transfera 99.3 2E-11 4.4E-16 102.3 10.3 108 223-408 4-112 (113)
51 cd04803 CBS_pair_15 The CBS do 99.3 1.8E-11 4E-16 103.6 10.0 119 222-408 2-121 (122)
52 cd04586 CBS_pair_BON_assoc Thi 99.3 2E-11 4.3E-16 106.1 10.4 127 221-409 2-135 (135)
53 PLN02274 inosine-5'-monophosph 99.3 2.6E-11 5.6E-16 129.3 13.3 117 219-415 106-226 (505)
54 cd04635 CBS_pair_22 The CBS do 99.3 2.2E-11 4.8E-16 103.1 10.4 120 222-409 2-122 (122)
55 cd04643 CBS_pair_30 The CBS do 99.3 3.8E-11 8.2E-16 100.6 11.6 99 19-135 2-100 (116)
56 PRK11543 gutQ D-arabinose 5-ph 99.3 4.4E-11 9.5E-16 120.0 14.0 106 7-135 196-302 (321)
57 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 4.2E-11 9.1E-16 99.0 11.6 106 221-408 2-108 (109)
58 cd04620 CBS_pair_7 The CBS dom 99.3 2.2E-11 4.7E-16 102.3 9.9 110 222-409 2-115 (115)
59 cd04626 CBS_pair_13 The CBS do 99.3 3.3E-11 7.2E-16 100.5 10.9 108 222-408 2-110 (111)
60 cd04623 CBS_pair_10 The CBS do 99.3 5.8E-11 1.3E-15 98.6 12.1 96 19-135 2-98 (113)
61 cd04640 CBS_pair_27 The CBS do 99.3 4.2E-11 9.2E-16 102.9 11.4 117 222-408 2-125 (126)
62 cd04632 CBS_pair_19 The CBS do 99.3 6.4E-11 1.4E-15 101.6 12.4 100 19-134 2-109 (128)
63 cd04636 CBS_pair_23 The CBS do 99.3 7.8E-11 1.7E-15 101.9 12.9 101 19-135 2-117 (132)
64 cd04606 CBS_pair_Mg_transporte 99.3 3.4E-11 7.5E-16 100.4 10.0 103 225-410 1-109 (109)
65 PRK07107 inosine 5-monophospha 99.3 2.6E-11 5.6E-16 129.1 11.4 109 223-410 107-219 (502)
66 cd04593 CBS_pair_EriC_assoc_ba 99.3 9.9E-11 2.1E-15 98.4 12.7 97 18-136 1-98 (115)
67 PRK01862 putative voltage-gate 99.3 2.6E-11 5.7E-16 131.3 11.5 127 209-412 445-572 (574)
68 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 3.6E-11 7.7E-16 100.2 9.8 110 222-408 3-113 (114)
69 cd04601 CBS_pair_IMPDH This cd 99.3 5.4E-11 1.2E-15 98.5 10.8 106 221-408 2-109 (110)
70 cd04600 CBS_pair_HPP_assoc Thi 99.2 1.2E-10 2.7E-15 98.8 13.1 102 18-135 2-108 (124)
71 cd04607 CBS_pair_NTP_transfera 99.2 1.4E-10 3E-15 97.2 13.0 93 20-135 4-97 (113)
72 TIGR03520 GldE gliding motilit 99.2 1.3E-10 2.9E-15 121.1 15.4 163 4-242 187-351 (408)
73 cd04642 CBS_pair_29 The CBS do 99.2 6.2E-11 1.3E-15 101.7 10.8 115 106-271 2-126 (126)
74 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 6.1E-11 1.3E-15 98.6 10.2 110 222-408 2-113 (114)
75 cd04639 CBS_pair_26 The CBS do 99.2 3.4E-11 7.4E-16 100.2 8.6 108 222-408 2-110 (111)
76 cd04589 CBS_pair_CAP-ED_DUF294 99.2 1.8E-10 3.9E-15 96.1 12.8 94 19-135 2-96 (111)
77 cd04631 CBS_pair_18 The CBS do 99.2 1.4E-10 3E-15 98.6 12.4 103 18-135 1-109 (125)
78 cd04624 CBS_pair_11 The CBS do 99.2 8.2E-11 1.8E-15 98.1 10.7 109 222-408 2-111 (112)
79 cd04629 CBS_pair_16 The CBS do 99.2 1.1E-10 2.4E-15 97.4 11.5 97 19-135 2-99 (114)
80 cd04595 CBS_pair_DHH_polyA_Pol 99.2 1.1E-10 2.4E-15 97.2 11.3 107 221-408 2-109 (110)
81 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 7.7E-11 1.7E-15 97.7 10.3 110 221-409 1-111 (111)
82 cd04585 CBS_pair_ACT_assoc2 Th 99.2 1.1E-10 2.4E-15 98.0 11.3 119 222-408 2-121 (122)
83 cd04625 CBS_pair_12 The CBS do 99.2 1.1E-10 2.4E-15 97.3 11.1 109 222-408 2-111 (112)
84 TIGR01302 IMP_dehydrog inosine 99.2 6.6E-11 1.4E-15 124.7 12.1 113 218-412 85-202 (450)
85 cd04587 CBS_pair_CAP-ED_DUF294 99.2 5.4E-11 1.2E-15 99.2 9.2 110 222-408 2-112 (113)
86 PRK15094 magnesium/cobalt effl 99.2 5.9E-11 1.3E-15 118.5 11.1 126 208-415 64-193 (292)
87 cd04610 CBS_pair_ParBc_assoc T 99.2 1.3E-10 2.9E-15 95.8 11.4 104 221-408 2-106 (107)
88 cd04801 CBS_pair_M50_like This 99.2 9.8E-11 2.1E-15 98.3 10.7 96 18-135 1-98 (114)
89 cd04588 CBS_pair_CAP-ED_DUF294 99.2 1.3E-10 2.8E-15 96.6 11.2 108 221-408 1-109 (110)
90 cd04639 CBS_pair_26 The CBS do 99.2 2E-10 4.3E-15 95.6 12.3 93 19-135 2-95 (111)
91 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 1.6E-10 3.6E-15 96.0 11.7 96 18-135 1-97 (114)
92 cd04611 CBS_pair_PAS_GGDEF_DUF 99.2 1.2E-10 2.6E-15 96.6 10.8 108 222-408 2-110 (111)
93 cd04637 CBS_pair_24 The CBS do 99.2 1.8E-10 4E-15 97.6 12.2 120 222-409 2-122 (122)
94 cd04621 CBS_pair_8 The CBS dom 99.2 2E-10 4.3E-15 100.9 12.6 101 19-135 2-120 (135)
95 cd04622 CBS_pair_9 The CBS dom 99.2 1E-10 2.2E-15 97.5 10.1 110 222-408 2-112 (113)
96 PRK07807 inosine 5-monophospha 99.2 1.4E-10 3.1E-15 122.8 13.6 117 8-200 89-206 (479)
97 PTZ00314 inosine-5'-monophosph 99.2 7.7E-11 1.7E-15 125.5 11.6 118 218-415 101-222 (495)
98 cd04614 CBS_pair_1 The CBS dom 99.2 1.6E-10 3.5E-15 95.4 10.9 78 19-135 2-80 (96)
99 cd04605 CBS_pair_MET2_assoc Th 99.2 3.8E-10 8.3E-15 93.7 13.3 92 18-135 2-94 (110)
100 cd04803 CBS_pair_15 The CBS do 99.2 2.4E-10 5.1E-15 96.7 12.2 101 19-135 2-106 (122)
101 cd04583 CBS_pair_ABC_OpuCA_ass 99.2 3.5E-10 7.6E-15 93.5 12.8 91 18-135 2-93 (109)
102 PRK05567 inosine 5'-monophosph 99.2 1.5E-10 3.3E-15 123.2 13.3 113 218-412 92-206 (486)
103 cd04590 CBS_pair_CorC_HlyC_ass 99.2 4.4E-10 9.4E-15 93.5 13.2 93 19-135 2-95 (111)
104 cd04624 CBS_pair_11 The CBS do 99.2 4.6E-10 1E-14 93.5 13.2 94 19-135 2-96 (112)
105 PRK15094 magnesium/cobalt effl 99.2 3.9E-10 8.5E-15 112.6 14.8 164 4-240 63-228 (292)
106 cd04633 CBS_pair_20 The CBS do 99.2 2.2E-10 4.7E-15 96.8 11.1 118 222-408 2-120 (121)
107 cd04626 CBS_pair_13 The CBS do 99.2 3.3E-10 7.1E-15 94.5 12.0 94 19-135 2-96 (111)
108 cd04602 CBS_pair_IMPDH_2 This 99.2 2.2E-10 4.9E-15 96.4 10.9 107 222-408 3-113 (114)
109 cd04800 CBS_pair_CAP-ED_DUF294 99.2 2.1E-10 4.5E-15 95.5 10.6 108 222-408 2-110 (111)
110 cd04586 CBS_pair_BON_assoc Thi 99.2 2.7E-10 5.8E-15 99.0 11.6 101 18-134 2-119 (135)
111 TIGR00400 mgtE Mg2+ transporte 99.2 2.1E-10 4.5E-15 120.9 13.0 121 208-413 128-254 (449)
112 COG0517 FOG: CBS domain [Gener 99.2 4.6E-10 1E-14 93.9 12.7 95 18-136 7-103 (117)
113 PRK01862 putative voltage-gate 99.2 2.6E-10 5.7E-15 123.5 14.1 127 6-200 445-572 (574)
114 cd04800 CBS_pair_CAP-ED_DUF294 99.2 4.4E-10 9.6E-15 93.5 12.4 95 18-135 1-96 (111)
115 cd04609 CBS_pair_PALP_assoc2 T 99.2 3.5E-10 7.5E-15 93.5 11.6 93 19-135 2-94 (110)
116 cd04588 CBS_pair_CAP-ED_DUF294 99.2 6.5E-10 1.4E-14 92.4 13.3 93 18-135 1-94 (110)
117 cd04599 CBS_pair_GGDEF_assoc2 99.2 4.1E-10 8.8E-15 92.6 11.9 102 222-408 2-104 (105)
118 cd04620 CBS_pair_7 The CBS dom 99.2 4.9E-10 1.1E-14 94.0 12.6 94 19-135 2-99 (115)
119 cd04802 CBS_pair_3 The CBS dom 99.2 2.9E-10 6.4E-15 94.7 11.0 109 222-408 2-111 (112)
120 PRK05567 inosine 5'-monophosph 99.2 5E-10 1.1E-14 119.2 15.3 174 10-270 89-264 (486)
121 cd04625 CBS_pair_12 The CBS do 99.2 5.2E-10 1.1E-14 93.2 12.3 95 18-134 1-96 (112)
122 TIGR03520 GldE gliding motilit 99.2 2.5E-10 5.4E-15 119.0 12.6 125 208-415 188-315 (408)
123 cd04636 CBS_pair_23 The CBS do 99.2 2.4E-10 5.2E-15 98.9 10.4 128 222-408 2-131 (132)
124 KOG1764 5'-AMP-activated prote 99.1 5.5E-10 1.2E-14 115.3 14.6 191 18-272 162-358 (381)
125 cd04637 CBS_pair_24 The CBS do 99.1 5.1E-10 1.1E-14 94.9 11.9 100 19-135 2-106 (122)
126 cd04615 CBS_pair_2 The CBS dom 99.1 7.2E-10 1.6E-14 92.5 12.5 94 20-135 3-97 (113)
127 cd04594 CBS_pair_EriC_assoc_ar 99.1 3.7E-10 8E-15 93.7 10.6 99 224-408 4-103 (104)
128 cd04582 CBS_pair_ABC_OpuCA_ass 99.1 6.2E-10 1.3E-14 91.9 11.9 89 18-135 1-90 (106)
129 cd04591 CBS_pair_EriC_assoc_eu 99.1 3.6E-10 7.8E-15 94.7 10.1 101 222-409 3-105 (105)
130 cd04604 CBS_pair_KpsF_GutQ_ass 99.1 6.5E-10 1.4E-14 92.6 11.5 95 19-135 3-98 (114)
131 PRK07107 inosine 5-monophospha 99.1 3.5E-10 7.6E-15 120.5 12.3 107 8-135 94-202 (502)
132 cd04595 CBS_pair_DHH_polyA_Pol 99.1 1.2E-09 2.5E-14 91.0 12.9 92 18-134 2-94 (110)
133 cd04633 CBS_pair_20 The CBS do 99.1 7.2E-10 1.6E-14 93.6 11.7 100 19-135 2-106 (121)
134 cd04635 CBS_pair_22 The CBS do 99.1 1E-09 2.2E-14 92.9 12.4 102 18-135 1-106 (122)
135 cd04585 CBS_pair_ACT_assoc2 Th 99.1 1.1E-09 2.5E-14 91.9 12.6 100 19-135 2-106 (122)
136 cd04589 CBS_pair_CAP-ED_DUF294 99.1 5.2E-10 1.1E-14 93.2 10.4 108 222-408 2-110 (111)
137 cd04596 CBS_pair_DRTGG_assoc T 99.1 8.5E-10 1.8E-14 91.8 11.3 89 19-135 3-92 (108)
138 cd04640 CBS_pair_27 The CBS do 99.1 7.5E-10 1.6E-14 95.1 11.3 98 19-135 2-109 (126)
139 cd04584 CBS_pair_ACT_assoc Thi 99.1 5.7E-10 1.2E-14 94.1 10.3 119 222-409 2-121 (121)
140 cd04612 CBS_pair_SpoIVFB_EriC_ 99.1 1.7E-09 3.8E-14 89.6 13.0 94 18-135 1-95 (111)
141 cd04587 CBS_pair_CAP-ED_DUF294 99.1 1.2E-09 2.5E-14 91.1 11.9 95 19-135 2-97 (113)
142 cd04611 CBS_pair_PAS_GGDEF_DUF 99.1 2E-09 4.3E-14 89.2 13.2 93 19-135 2-95 (111)
143 cd04622 CBS_pair_9 The CBS dom 99.1 1.6E-09 3.4E-14 90.3 12.5 95 18-135 1-97 (113)
144 TIGR01303 IMP_DH_rel_1 IMP deh 99.1 1.3E-09 2.9E-14 115.4 14.9 116 8-200 88-204 (475)
145 cd04802 CBS_pair_3 The CBS dom 99.1 2.2E-09 4.7E-14 89.5 13.1 96 18-135 1-97 (112)
146 cd04602 CBS_pair_IMPDH_2 This 99.1 1.4E-09 3.1E-14 91.4 12.1 93 19-135 3-98 (114)
147 cd02205 CBS_pair The CBS domai 99.1 9E-10 2E-14 89.9 10.5 110 222-408 2-112 (113)
148 TIGR00400 mgtE Mg2+ transporte 99.1 4.1E-10 8.8E-15 118.8 10.3 171 4-271 127-304 (449)
149 cd04599 CBS_pair_GGDEF_assoc2 99.1 1.8E-09 3.9E-14 88.7 11.6 88 19-135 2-90 (105)
150 cd04634 CBS_pair_21 The CBS do 99.1 2E-09 4.4E-14 95.0 12.0 132 221-408 1-142 (143)
151 TIGR01137 cysta_beta cystathio 99.0 1.7E-09 3.6E-14 113.7 13.3 97 5-125 332-428 (454)
152 cd04638 CBS_pair_25 The CBS do 99.0 2.7E-09 5.9E-14 88.3 11.9 103 222-408 2-105 (106)
153 PLN02274 inosine-5'-monophosph 99.0 1.7E-09 3.7E-14 115.5 13.3 114 18-199 108-222 (505)
154 cd02205 CBS_pair The CBS domai 99.0 3.6E-09 7.9E-14 86.3 12.0 95 19-135 2-97 (113)
155 cd04601 CBS_pair_IMPDH This cd 99.0 2.1E-09 4.6E-14 88.9 10.4 91 18-135 2-94 (110)
156 TIGR00393 kpsF KpsF/GutQ famil 99.0 8.8E-10 1.9E-14 107.5 9.0 107 218-402 160-268 (268)
157 cd04592 CBS_pair_EriC_assoc_eu 99.0 2.2E-09 4.7E-14 94.7 10.6 107 18-137 1-119 (133)
158 cd04584 CBS_pair_ACT_assoc Thi 99.0 6E-09 1.3E-13 87.8 12.9 101 19-135 2-106 (121)
159 COG4109 Predicted transcriptio 99.0 1.3E-09 2.7E-14 109.2 9.9 112 218-412 193-307 (432)
160 TIGR01137 cysta_beta cystathio 99.0 1.2E-09 2.7E-14 114.7 10.4 121 208-410 332-453 (454)
161 cd04598 CBS_pair_GGDEF_assoc T 99.0 3.8E-09 8.2E-14 89.0 10.9 112 222-408 2-118 (119)
162 cd04606 CBS_pair_Mg_transporte 99.0 2.9E-09 6.3E-14 88.7 10.1 85 23-135 2-92 (109)
163 cd04610 CBS_pair_ParBc_assoc T 99.0 5.9E-09 1.3E-13 85.9 11.7 89 18-135 2-91 (107)
164 cd04609 CBS_pair_PALP_assoc2 T 99.0 4.1E-09 8.8E-14 87.0 10.7 107 106-270 2-109 (110)
165 TIGR00393 kpsF KpsF/GutQ famil 99.0 3.7E-09 7.9E-14 103.2 11.9 104 8-136 155-260 (268)
166 cd04592 CBS_pair_EriC_assoc_eu 99.0 1.8E-09 4E-14 95.2 8.7 116 222-392 2-118 (133)
167 cd04591 CBS_pair_EriC_assoc_eu 99.0 7.6E-09 1.6E-13 86.6 12.0 87 18-134 2-89 (105)
168 TIGR01302 IMP_dehydrog inosine 99.0 3.8E-09 8.2E-14 111.5 12.1 96 18-136 88-184 (450)
169 cd04634 CBS_pair_21 The CBS do 99.0 1E-08 2.2E-13 90.5 12.8 101 18-135 1-128 (143)
170 cd04594 CBS_pair_EriC_assoc_ar 98.9 1.2E-08 2.6E-13 84.6 11.7 84 21-134 4-88 (104)
171 PF00571 CBS: CBS domain CBS d 98.9 3.9E-09 8.3E-14 78.7 7.6 52 358-411 5-56 (57)
172 PTZ00314 inosine-5'-monophosph 98.9 7.3E-09 1.6E-13 110.5 11.9 97 18-136 104-201 (495)
173 cd04598 CBS_pair_GGDEF_assoc T 98.8 5E-08 1.1E-12 82.1 11.8 90 19-128 2-93 (119)
174 PF00571 CBS: CBS domain CBS d 98.8 1.5E-08 3.2E-13 75.6 7.3 56 10-80 1-56 (57)
175 PRK11573 hypothetical protein; 98.8 1.3E-07 2.9E-12 98.8 16.5 167 4-240 183-350 (413)
176 cd04638 CBS_pair_25 The CBS do 98.8 1.1E-07 2.4E-12 78.6 11.7 89 19-135 2-91 (106)
177 PRK11573 hypothetical protein; 98.7 1.3E-07 2.8E-12 98.9 12.2 129 208-415 184-315 (413)
178 COG4109 Predicted transcriptio 98.6 4.3E-07 9.4E-12 91.3 11.3 118 9-200 189-307 (432)
179 COG2239 MgtE Mg/Co/Ni transpor 98.6 3.8E-07 8.2E-12 96.0 11.5 121 208-413 129-255 (451)
180 COG1253 TlyC Hemolysins and re 98.5 2.3E-06 4.9E-11 90.0 16.3 168 4-243 202-370 (429)
181 COG1253 TlyC Hemolysins and re 98.5 1.3E-06 2.9E-11 91.7 12.7 127 208-415 203-332 (429)
182 TIGR01186 proV glycine betaine 98.4 3.2E-06 6.8E-11 87.1 12.1 113 220-415 249-362 (363)
183 KOG2550 IMP dehydrogenase/GMP 98.2 2.7E-06 5.9E-11 87.0 7.4 112 222-412 117-229 (503)
184 PRK10070 glycine betaine trans 98.2 8.4E-06 1.8E-10 85.0 11.0 107 225-414 289-396 (400)
185 smart00116 CBS Domain in cysta 98.2 6.2E-06 1.3E-10 57.0 6.3 48 361-410 1-48 (49)
186 KOG2550 IMP dehydrogenase/GMP 98.0 1.3E-05 2.9E-10 82.1 7.8 96 18-137 116-212 (503)
187 COG4536 CorB Putative Mg2+ and 98.0 6.7E-05 1.4E-09 76.5 11.8 108 6-135 198-305 (423)
188 COG2239 MgtE Mg/Co/Ni transpor 97.9 5.7E-05 1.2E-09 79.8 10.9 118 7-200 131-254 (451)
189 cd04597 CBS_pair_DRTGG_assoc2 97.9 3.4E-05 7.5E-10 65.6 6.8 50 357-408 63-112 (113)
190 TIGR01186 proV glycine betaine 97.8 0.00027 5.8E-09 73.0 13.1 106 21-200 253-359 (363)
191 PRK10070 glycine betaine trans 97.8 0.0003 6.6E-09 73.5 12.9 106 22-200 289-394 (400)
192 cd04597 CBS_pair_DRTGG_assoc2 97.7 7.8E-05 1.7E-09 63.4 5.5 53 212-270 59-112 (113)
193 smart00116 CBS Domain in cysta 97.5 0.00032 7E-09 48.1 6.4 47 20-79 2-48 (49)
194 KOG0474 Cl- channel CLC-7 and 97.5 0.00025 5.4E-09 76.3 8.2 159 217-411 586-747 (762)
195 COG4536 CorB Putative Mg2+ and 97.4 0.00055 1.2E-08 69.9 9.0 129 208-415 197-328 (423)
196 COG4535 CorC Putative Mg2+ and 97.3 0.0014 3E-08 63.4 9.0 164 8-244 67-232 (293)
197 COG4535 CorC Putative Mg2+ and 97.1 0.00099 2.2E-08 64.4 6.4 117 218-413 72-191 (293)
198 KOG0474 Cl- channel CLC-7 and 96.8 0.0047 1E-07 66.8 8.6 118 5-135 579-729 (762)
199 KOG0475 Cl- channel CLC-3 and 96.5 0.016 3.5E-07 62.8 10.3 135 222-411 557-695 (696)
200 KOG0475 Cl- channel CLC-3 and 95.7 0.1 2.2E-06 56.8 11.8 107 14-134 552-677 (696)
201 COG4175 ProV ABC-type proline/ 94.6 0.12 2.7E-06 52.4 7.8 51 360-413 335-385 (386)
202 TIGR03415 ABC_choXWV_ATP choli 93.7 0.13 2.8E-06 53.6 6.2 50 359-412 332-381 (382)
203 KOG0476 Cl- channel CLC-2 and 91.1 1.3 2.9E-05 49.5 10.0 51 359-412 809-859 (931)
204 COG1125 OpuBA ABC-type proline 84.2 1.6 3.6E-05 43.4 5.0 38 370-409 271-308 (309)
205 TIGR03415 ABC_choXWV_ATP choli 80.3 2 4.4E-05 44.8 4.3 47 220-271 332-378 (382)
206 COG4175 ProV ABC-type proline/ 78.1 2.4 5.1E-05 43.5 3.8 49 220-272 334-382 (386)
207 KOG0476 Cl- channel CLC-2 and 77.0 3.4 7.3E-05 46.4 4.8 56 357-412 593-648 (931)
208 COG1125 OpuBA ABC-type proline 66.5 8.8 0.00019 38.4 4.6 41 25-78 268-308 (309)
209 KOG2118 Predicted membrane pro 62.2 11 0.00024 40.9 4.8 109 6-135 202-311 (498)
210 PF05198 IF3_N: Translation in 52.8 25 0.00055 28.3 4.3 37 383-421 12-48 (76)
211 COG3981 Predicted acetyltransf 42.8 12 0.00025 35.0 1.0 44 385-431 70-118 (174)
212 PRK00028 infC translation init 34.2 42 0.00091 31.4 3.3 39 382-422 18-56 (177)
213 TIGR00168 infC translation ini 30.4 48 0.001 30.6 3.0 39 382-422 6-44 (165)
214 PF13673 Acetyltransf_10: Acet 24.6 1E+02 0.0023 24.9 3.8 31 372-404 32-62 (117)
215 CHL00199 infC translation init 24.2 75 0.0016 30.0 3.1 38 383-422 24-61 (182)
No 1
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.98 E-value=1.4e-31 Score=274.45 Aligned_cols=301 Identities=24% Similarity=0.336 Sum_probs=239.9
Q ss_pred ccccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcC
Q 013939 3 SVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKS 82 (433)
Q Consensus 3 ~~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~ 82 (433)
.++..|++.|++....+++.++...++.+|+.+|..++..++|+||.. ..+++|++++.|++.++...
T Consensus 61 ~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~------------~~~~~g~~~~~d~i~~~~~~ 128 (381)
T KOG1764|consen 61 KFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSK------------KQQFVGMLTITDFITVLLRY 128 (381)
T ss_pred HHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCc------------cceeEEEEEHHHHHHHHHHh
Confidence 356778899999888899999999999999999999999999999986 37999999999999988642
Q ss_pred CC--c--chHHh---h---cCCcchhccccCCC-ccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhcc
Q 013939 83 DC--L--EDQDK---A---MKTPVSQVIVPNNS-LLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYN 150 (433)
Q Consensus 83 ~~--l--~~~~~---~---l~~pV~~Im~~~~~-~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~ 150 (433)
.. . .+... . ...++..+-..... +++.+.|..+++++...+. .++||+||.+...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~------------- 195 (381)
T KOG1764|consen 129 YKSKSSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPET------------- 195 (381)
T ss_pred hccCCcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeecccc-------------
Confidence 11 1 11111 1 12344444443333 3499999999999999998 7999999976211
Q ss_pred ccccccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCC--CCCCCCCcccccCcCCC-eEEEc
Q 013939 151 GKWLKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGAL--APLPLSSISSLGVINPN-YSSIE 227 (433)
Q Consensus 151 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l--~~l~~~tV~~L~im~~~-vitv~ 227 (433)
+.+.+++||..|++|++.+...+ ..+..+++.+|++.+-. +..+.
T Consensus 196 --------------------------------~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~ 243 (381)
T KOG1764|consen 196 --------------------------------GEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASIS 243 (381)
T ss_pred --------------------------------cceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheeec
Confidence 25688999999999999887766 47889999999998865 99999
Q ss_pred CCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCCCCcc-
Q 013939 228 ASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYS- 305 (433)
Q Consensus 228 ~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~- 305 (433)
.++++.+|+++|.+ +++++||||. .| +.+|++|-.|+++....+. |- .+.. .
T Consensus 244 ~~~~v~~al~~m~~~~is~lpvV~~--~g--~~v~~~s~~Dv~~l~~~~~-----------~~----------~~~~-~~ 297 (381)
T KOG1764|consen 244 EDTPVIEALKIMSERRISALPVVDE--NG--KKVGNYSRFDVIHLAREGT-----------YN----------NLDL-SC 297 (381)
T ss_pred CCCcHHHHHHHHHhcCcCcceEEcC--CC--ceecceehhhhhhhhhcCc-----------cC----------ccch-hH
Confidence 99999999999999 9999999998 77 7799999999998652110 00 0000 0
Q ss_pred cccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcCCCE
Q 013939 306 ANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATH 385 (433)
Q Consensus 306 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhr 385 (433)
+.. . .++| ...+.+++||++++||.+++++|+++++||
T Consensus 298 l~~----~------------------------------------~~~~--~~~~~~vvtc~~~ssL~~vi~~lv~~~vHR 335 (381)
T KOG1764|consen 298 LSE----A------------------------------------LSHR--PIRFEGVVTCRPTSTLAEVIDKLVAHRVHR 335 (381)
T ss_pred HHH----H------------------------------------hhhc--ccccCccEEEeecchHHHHHHHHHhcCceE
Confidence 000 0 0001 113556999999999999999999999999
Q ss_pred EEEEeCCCCCeEEEEEeHHHHHHHHHhCCCCcCCCCCCccccccc
Q 013939 386 VWVTEDESDDVLVGVVGYADILVAVTKQPAALTPANRTYEGFATE 430 (433)
Q Consensus 386 l~VVD~~~~~~lvGIVs~~DIL~~i~~~~~~~~~~~~~~~~~~~~ 430 (433)
+||||++ |+++||||++||+.++..+|.+-.|..+.++.+.-+
T Consensus 336 l~VVd~~--~~l~GvvSLsDil~~l~~~p~~~~~~~~~~~~~~~~ 378 (381)
T KOG1764|consen 336 LWVVDED--GVLVGVISLSDILSYLVLTPSGGTPDAPSSSMSTSE 378 (381)
T ss_pred EEEEcCC--CcEEEEeeHHHHHHHHHhCccCCCCCCcCccccccC
Confidence 9999998 999999999999999999999999999988887654
No 2
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.68 E-value=2.9e-16 Score=150.50 Aligned_cols=120 Identities=25% Similarity=0.349 Sum_probs=106.6
Q ss_pred chhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcc
Q 013939 7 YHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLE 86 (433)
Q Consensus 7 ~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~ 86 (433)
..+|.+++ +++++++.+++|+.+|.+.+++++|.++||+|. ++++||+|..||...+++.
T Consensus 171 k~~V~~~~--s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~--------------dk~vGiit~~dI~~aia~g---- 230 (294)
T COG2524 171 KEKVKNLM--SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD--------------DKIVGIITLSDIAKAIANG---- 230 (294)
T ss_pred cchhhhhc--cCCceEecCCccHHHHHHHHHHcCccCCceecC--------------CceEEEEEHHHHHHHHHcC----
Confidence 34678877 488999999999999999999999999999995 6999999999999988764
Q ss_pred hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccc
Q 013939 87 DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSN 165 (433)
Q Consensus 87 ~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 165 (433)
.++.+|+++|.++ ++++++++.+.||+++|. +|++|++|.+..+
T Consensus 231 ----~~~~kV~~~M~k~---vitI~eDe~i~dAir~M~~~nVGRLlV~ds~g---------------------------- 275 (294)
T COG2524 231 ----NLDAKVSDYMRKN---VITINEDEDIYDAIRLMNKNNVGRLLVTDSNG---------------------------- 275 (294)
T ss_pred ----CccccHHHHhccC---CceEcCchhHHHHHHHHHhcCcceEEEEccCC----------------------------
Confidence 2458999999987 999999999999999999 8999999987532
Q ss_pred ccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHH
Q 013939 166 NLIANANRPSSSSTTSVRDKFCCLSREDVIRFLI 199 (433)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~ 199 (433)
+.+||||.+||++-++
T Consensus 276 ------------------kpvGiITrTDIL~~ia 291 (294)
T COG2524 276 ------------------KPVGIITRTDILTRIA 291 (294)
T ss_pred ------------------cEEEEEehHHHHHHhh
Confidence 4689999999999775
No 3
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.66 E-value=2.7e-16 Score=150.78 Aligned_cols=128 Identities=19% Similarity=0.242 Sum_probs=108.6
Q ss_pred CCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHh
Q 013939 203 GALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALA 281 (433)
Q Consensus 203 ~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~ 281 (433)
..+..++..++.+ +|+++++++.+++|+.+|.+.+.+ ++++.||+|+ + |++|+||.+|+.... +
T Consensus 164 ~~m~siPk~~V~~--~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~---d--k~vGiit~~dI~~ai--------a 228 (294)
T COG2524 164 SKMVSIPKEKVKN--LMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD---D--KIVGIITLSDIAKAI--------A 228 (294)
T ss_pred eeeeecCcchhhh--hccCCceEecCCccHHHHHHHHHHcCccCCceecC---C--ceEEEEEHHHHHHHH--------H
Confidence 4456678888887 699999999999999999999999 9999999995 7 999999999997543 1
Q ss_pred hccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCC
Q 013939 282 NLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRST 361 (433)
Q Consensus 282 ~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (433)
. .+++. ++ + ..|+++
T Consensus 229 ~------------------------------g~~~~-------------kV--~--------------------~~M~k~ 243 (294)
T COG2524 229 N------------------------------GNLDA-------------KV--S--------------------DYMRKN 243 (294)
T ss_pred c------------------------------CCccc-------------cH--H--------------------HHhccC
Confidence 1 01110 11 0 237999
Q ss_pred CeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 362 PLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 362 ~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
++|+..|+.+.+|+++|..++++||-|+|++ |+|+||||++|||+.++.
T Consensus 244 vitI~eDe~i~dAir~M~~~nVGRLlV~ds~--gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 244 VITINEDEDIYDAIRLMNKNNVGRLLVTDSN--GKPVGIITRTDILTRIAG 292 (294)
T ss_pred CceEcCchhHHHHHHHHHhcCcceEEEEccC--CcEEEEEehHHHHHHhhc
Confidence 9999999999999999999999999999998 999999999999999874
No 4
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.58 E-value=1.3e-14 Score=120.87 Aligned_cols=94 Identities=11% Similarity=0.117 Sum_probs=83.8
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
.++++.+++++.+|+++|.+ +++++||+|+ + | +++|+||.+|+.+..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~--~~~--~~~Givt~~Dl~~~~--------------------------- 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDS--RKQ--QFVGMLTITDFILIL--------------------------- 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeC--CCC--EEEEEEEHHHHhhhe---------------------------
Confidence 47899999999999999999 8999999996 4 6 999999999985321
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML 379 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~ 379 (433)
. +++|+|+++|.+|+++|.
T Consensus 51 -----------------------------------------------------------~--~~~v~~~~~l~~a~~~m~ 69 (98)
T cd04618 51 -----------------------------------------------------------R--LVSIHPERSLFDAALLLL 69 (98)
T ss_pred -----------------------------------------------------------e--eEEeCCCCcHHHHHHHHH
Confidence 1 678999999999999999
Q ss_pred HcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 380 SHRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
+++++++||+|++ +|+++|+||.+||++
T Consensus 70 ~~~~~~lpVvd~~-~~~~~giit~~d~~~ 97 (98)
T cd04618 70 KNKIHRLPVIDPS-TGTGLYILTSRRILK 97 (98)
T ss_pred HCCCCEeeEEECC-CCCceEEeehhhhhc
Confidence 9999999999973 379999999999986
No 5
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.56 E-value=2.3e-14 Score=128.78 Aligned_cols=120 Identities=15% Similarity=0.280 Sum_probs=99.6
Q ss_pred hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939 9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ 88 (433)
Q Consensus 9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~ 88 (433)
++.++| +.++|++.+++++.+|+++|.++||+++||++. +++||-||+.||++.++++.
T Consensus 66 ta~~iM--~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--------------~k~VGsItE~~iv~~~le~~----- 124 (187)
T COG3620 66 TAKTIM--HSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE--------------DKVVGSITENDIVRALLEGM----- 124 (187)
T ss_pred eHhhhc--cCCeeEECchhhHHHHHHHHHHcCCccCceeeC--------------CeeeeeecHHHHHHHHhccc-----
Confidence 355665 488999999999999999999999999999995 79999999999999988751
Q ss_pred HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHHcCCCeEEeeecCcccccccchhhhccccccccccccCccccccc
Q 013939 89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLI 168 (433)
Q Consensus 89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~ 168 (433)
....+..|+++|+. +|++|+++++|..+-.++ ++...++|..+
T Consensus 125 e~i~~~~vr~vM~e---~fP~Vs~~~~l~vI~~LL-~~~~AVlV~e~--------------------------------- 167 (187)
T COG3620 125 ESIRSLRVREVMGE---PFPTVSPDESLNVISQLL-EEHPAVLVVEN--------------------------------- 167 (187)
T ss_pred cchhhhhHHHHhcC---CCCcCCCCCCHHHHHHHH-hhCCeEEEEeC---------------------------------
Confidence 22335789999995 599999999998776655 66677777643
Q ss_pred cccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 169 ANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
|+.+||||+.||++++.+
T Consensus 168 --------------G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 168 --------------GKVVGIITKADIMKLLAG 185 (187)
T ss_pred --------------CceEEEEeHHHHHHHHhc
Confidence 346899999999999864
No 6
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=2.9e-14 Score=121.29 Aligned_cols=118 Identities=14% Similarity=0.200 Sum_probs=90.1
Q ss_pred CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939 221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
++++++.+++++.+|++.|.+ +++++||+++ +| +++|+++.+|++....... . .
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~--~~--~~~Giv~~~dl~~~~~~~~----~-----------------~ 55 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDE--NG--KVVDVYSRFDVINLAKEGA----Y-----------------N 55 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECC--CC--eEEEEEeHHHHHHHHhcCc----c-----------------c
Confidence 357899999999999999999 8999999997 78 9999999999986421000 0 0
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML 379 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~ 379 (433)
.... .+ ..+ .. . ...+..++.+|.+++++.+++++|.
T Consensus 56 ~~~~-~~------------------~~~----~~---------------~-----~~~~~~~~~~v~~~~~l~~~~~~m~ 92 (120)
T cd04641 56 NLDL-TV------------------GEA----LE---------------R-----RSQDFEGVRTCSPDDCLRTIFDLIV 92 (120)
T ss_pred cccC-CH------------------HHH----Hh---------------h-----cccCCCCCeEEcCCCcHHHHHHHHH
Confidence 0000 00 000 00 0 0113567899999999999999999
Q ss_pred HcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 380 SHRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
+++++++||+|++ |+++||||+.||++
T Consensus 93 ~~~~~~l~Vvd~~--~~~~Givt~~di~~ 119 (120)
T cd04641 93 KARVHRLVVVDEN--KRVEGIISLSDILQ 119 (120)
T ss_pred hcCccEEEEECCC--CCEEEEEEHHHhhc
Confidence 9999999999987 89999999999986
No 7
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.52 E-value=4.2e-14 Score=137.99 Aligned_cols=125 Identities=15% Similarity=0.229 Sum_probs=102.9
Q ss_pred cCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccC
Q 013939 217 GVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDN 295 (433)
Q Consensus 217 ~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~ 295 (433)
++|+++|+|+.+++++-+|.++|.+ ++.++||+|+ +. +++||++.+||.+-..
T Consensus 249 dIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~--~~--rl~GiVt~~dl~~~a~---------------------- 302 (382)
T COG3448 249 DIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE--HR--RLVGIVTQRDLLKHAR---------------------- 302 (382)
T ss_pred HhcCccceecCCcCChHHHHHHHHHcCccccccccc--cc--ceeeeeeHHHHhhccC----------------------
Confidence 5899999999999999999999999 9999999998 66 9999999999986431
Q ss_pred CCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHH
Q 013939 296 VTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVM 375 (433)
Q Consensus 296 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~ 375 (433)
|..|.+ ++ -..+ .+ ....|+.++.|++|+++..+.+
T Consensus 303 --~~p~qr------lr--~~~~------------~~----------------------vk~imt~~v~tv~pdtpa~~lv 338 (382)
T COG3448 303 --PSPFQR------LR--FLRP------------PT----------------------VKGIMTTPVVTVRPDTPAVELV 338 (382)
T ss_pred --cchHHH------hh--ccCC------------Cc----------------------ccccccCcceeecCCCcHHHHH
Confidence 111111 00 0000 00 0144799999999999999999
Q ss_pred HHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 376 AQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 376 ~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
-.+.+.+.|++||+|++ |+++||||.+|++.++.++
T Consensus 339 p~lad~g~H~lpvld~~--g~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 339 PRLADEGLHALPVLDAA--GKLVGIVSQTDLIAALYRN 374 (382)
T ss_pred HHhhcCCcceeeEEcCC--CcEEEEeeHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999874
No 8
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.51 E-value=1.2e-13 Score=116.23 Aligned_cols=108 Identities=18% Similarity=0.167 Sum_probs=88.6
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.+++++.+|++.|.+ +.+.++|+|+ +| +++|+||..|+++.... . +
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~--~~--~~~G~v~~~dl~~~~~~----~------------------~-- 53 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDE--EN--KVLGQVTLSDLLEIGPN----D------------------Y-- 53 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC--CC--CEEEEEEHHHHHhhccc----c------------------c--
Confidence 46789999999999999988 8899999997 78 99999999999764200 0 0
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
.. ..+ . ..|..++.++.+++++.+|+.+|.+
T Consensus 54 ------------~~---------------~~v--~--------------------~~~~~~~~~v~~~~~l~~al~~m~~ 84 (111)
T cd04603 54 ------------ET---------------LKV--C--------------------EVYIVPVPIVYCDSKVTDLLRIFRE 84 (111)
T ss_pred ------------cc---------------cCh--h--------------------heeecCCcEECCCCcHHHHHHHHHH
Confidence 00 000 0 1246678899999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||||++ |+++|+||.+||++
T Consensus 85 ~~~~~lpVvd~~--~~~~Giit~~di~~ 110 (111)
T cd04603 85 TEPPVVAVVDKE--GKLVGTIYERELLR 110 (111)
T ss_pred cCCCeEEEEcCC--CeEEEEEEhHHhhc
Confidence 999999999987 99999999999986
No 9
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.49 E-value=2e-13 Score=112.89 Aligned_cols=94 Identities=19% Similarity=0.262 Sum_probs=84.7
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.+++++.+|++.|.+ +++.+||+|+ +| +++|+++.+|+++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~--~~~Giv~~~dl~~~~---------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD--DG--KLSGIITERDLIAKS---------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC--CC--CEEEEEEHHHHhcCC----------------------------
Confidence 57899999999999999988 8999999997 78 999999999986321
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
.+.+|.+++++.+++.+|.+
T Consensus 50 ------------------------------------------------------------~~~~v~~~~~l~~a~~~m~~ 69 (96)
T cd04614 50 ------------------------------------------------------------EVVTATKRTTVSECAQKMKR 69 (96)
T ss_pred ------------------------------------------------------------CcEEecCCCCHHHHHHHHHH
Confidence 16788999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILVA 409 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~~ 409 (433)
++++++||+|++ |+++|+||++||+++
T Consensus 70 ~~~~~lpVv~~~--~~~~Giit~~di~~~ 96 (96)
T cd04614 70 NRIEQIPIINGN--DKLIGLLRDHDLLKP 96 (96)
T ss_pred hCCCeeeEECCC--CcEEEEEEHHHhhcC
Confidence 999999999997 899999999999864
No 10
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.48 E-value=1.7e-13 Score=133.74 Aligned_cols=132 Identities=17% Similarity=0.238 Sum_probs=108.0
Q ss_pred cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939 4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83 (433)
Q Consensus 4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~ 83 (433)
+|.--+|+|+| +++|+++.+++++.+|.++|.+++|+.+||.|++ .+++||||.+|++...-..
T Consensus 241 ~~~~LtcadIM--SrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-------------~rl~GiVt~~dl~~~a~~~- 304 (382)
T COG3448 241 RMGELTCADIM--SRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEH-------------RRLVGIVTQRDLLKHARPS- 304 (382)
T ss_pred HhccccHHHhc--CccceecCCcCChHHHHHHHHHcCcccccccccc-------------cceeeeeeHHHHhhccCcc-
Confidence 45556789988 4999999999999999999999999999999974 7999999999998843210
Q ss_pred CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939 84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS 162 (433)
Q Consensus 84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 162 (433)
.+.-.+..-...|+.+|+. ++.++.|+++..|++-.|. .|.|.+||.+..
T Consensus 305 p~qrlr~~~~~~vk~imt~---~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~-------------------------- 355 (382)
T COG3448 305 PFQRLRFLRPPTVKGIMTT---PVVTVRPDTPAVELVPRLADEGLHALPVLDAA-------------------------- 355 (382)
T ss_pred hHHHhhccCCCcccccccC---cceeecCCCcHHHHHHHhhcCCcceeeEEcCC--------------------------
Confidence 1110122235779999995 4999999999999999999 789999998653
Q ss_pred cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
|+++|||||+|+|.-++.
T Consensus 356 --------------------g~lvGIvsQtDliaal~r 373 (382)
T COG3448 356 --------------------GKLVGIVSQTDLIAALYR 373 (382)
T ss_pred --------------------CcEEEEeeHHHHHHHHHH
Confidence 357999999999998875
No 11
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=3.8e-13 Score=115.52 Aligned_cols=124 Identities=26% Similarity=0.354 Sum_probs=91.5
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.+++++.+|++.|.+ +++++||+|+ +| +++|+++.+|++...... +.....+...+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~--~~--~~~Giv~~~dl~~~~~~~--~~~~~~~~~~~~~---------- 65 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE--KG--KLIGNISASDLKGLLLSP--DDLLLYRTITFKE---------- 65 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECC--CC--cEEEEEEHHHhhhhhcCc--chhhcccchhhhh----------
Confidence 47899999999999999988 8999999998 78 999999999998753110 0000000000000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
+... +. . .+..+..++++|.+++++.+++.+|.+
T Consensus 66 ---------~~~~-------------~~--~----------------------~~~~~~~~~~~v~~~~~l~~a~~~~~~ 99 (126)
T cd04642 66 ---------LSEK-------------FT--D----------------------SDGVKSRPLITCTPSSTLKEVITKLVA 99 (126)
T ss_pred ---------hhhh-------------cc--c----------------------ccccccCCCeEECCCCcHHHHHHHHHH
Confidence 0000 00 0 002256789999999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILVA 409 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~~ 409 (433)
++.+++||+|++ ++++|+||.+||+++
T Consensus 100 ~~~~~l~Vvd~~--~~~~Giit~~dil~~ 126 (126)
T cd04642 100 NKVHRVWVVDEE--GKPIGVITLTDIISI 126 (126)
T ss_pred hCCcEEEEECCC--CCEEEEEEHHHHhcC
Confidence 999999999987 899999999999863
No 12
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.45 E-value=4.9e-13 Score=112.90 Aligned_cols=110 Identities=14% Similarity=0.156 Sum_probs=88.8
Q ss_pred eEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCC
Q 013939 223 YSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSF 301 (433)
Q Consensus 223 vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~ 301 (433)
|.++.+++++.+|++.|.+ +...+||+|+ +| +++|++|.+|++++... . . .
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~--~g--~~~G~vt~~dl~~~~~~--------~---------~-~------ 54 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP--HG--KLAGVLTKTDVVRQMGR--------C---------G-G------ 54 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECC--CC--CEEEEEehHHHHHHHhh--------c---------C-C------
Confidence 7789999999999999988 8999999998 78 99999999999764200 0 0 0
Q ss_pred CCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHc
Q 013939 302 PDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSH 381 (433)
Q Consensus 302 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~ 381 (433)
.. .. ..+ + ..+..++++|++++++.+++..|.++
T Consensus 55 -----------~~-~~------------~~v------~----------------~~~~~~~~~v~~~~~l~~a~~~m~~~ 88 (114)
T cd04619 55 -----------PG-CT------------APV------E----------------NVMTRAVVSCRPGDLLHDVWQVMKQR 88 (114)
T ss_pred -----------Cc-cc------------CCH------H----------------HHhcCCCeeECCCCCHHHHHHHHHHc
Confidence 00 00 000 0 22467889999999999999999999
Q ss_pred CCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 382 RATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 382 ~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
+++++||+|++ |+++|+||++|+++
T Consensus 89 ~~~~lpVvd~~--~~~~Gvi~~~dl~~ 113 (114)
T cd04619 89 GLKNIPVVDEN--ARPLGVLNARDALK 113 (114)
T ss_pred CCCeEEEECCC--CcEEEEEEhHhhcc
Confidence 99999999987 89999999999975
No 13
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.45 E-value=7.2e-13 Score=110.28 Aligned_cols=80 Identities=29% Similarity=0.469 Sum_probs=70.9
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
.++++++++++.+|++.|.++++.++||+|++ +++++|++|..|+.+.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~------------~~~~~Givt~~Dl~~~~~------------------ 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSR------------KQQFVGMLTITDFILILR------------------ 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCC------------CCEEEEEEEHHHHhhhee------------------
Confidence 47899999999999999999999999999863 268999999999976421
Q ss_pred ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939 99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV 136 (433)
Q Consensus 99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~ 136 (433)
++++.|+++|.+|++.|. ++++++||.+++
T Consensus 52 --------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 82 (98)
T cd04618 52 --------LVSIHPERSLFDAALLLLKNKIHRLPVIDPS 82 (98)
T ss_pred --------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECC
Confidence 678999999999999999 889999998653
No 14
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.44 E-value=2.4e-13 Score=146.16 Aligned_cols=285 Identities=13% Similarity=0.099 Sum_probs=176.6
Q ss_pred hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC---
Q 013939 8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC--- 84 (433)
Q Consensus 8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~--- 84 (433)
.+|+|++. ++++++++++++.+|+++|.++++..+||+|.+ ++++|+||..||..++.+...
T Consensus 68 ~~V~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-------------g~l~Givt~~di~~~~~~~~~~~~ 132 (546)
T PRK14869 68 PQVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-------------GKLLGLVSLSDLARAYMDILDPEI 132 (546)
T ss_pred CcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-------------CEEEEEEEHHHHHHHHHhhcchhh
Confidence 47899885 678999999999999999999999999999963 799999999999997664211
Q ss_pred cc-------hHHhhcCC------------------------cchhccccCCCccEEeCCCCcHHHHHHHHHcCCCeEEee
Q 013939 85 LE-------DQDKAMKT------------------------PVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVP 133 (433)
Q Consensus 85 l~-------~~~~~l~~------------------------pV~~Im~~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~ 133 (433)
+. ++.+.++- .+.+.|.+ +.++.+.....+..+ .+.+|++.++|.
T Consensus 133 ~~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~--~~lvi~gdr~d~~~~--ai~~~~~~lIlt 208 (546)
T PRK14869 133 LSKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEE--GDIVIVGDREDIQLA--AIEAGVRLLIIT 208 (546)
T ss_pred hhhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccC--CCEEEEcCcHHHHHH--HHHcCCCEEEEC
Confidence 11 11111110 11112222 235555444444332 233778877664
Q ss_pred ecCcccccccchhhhccccccccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCc
Q 013939 134 KSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSI 213 (433)
Q Consensus 134 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV 213 (433)
..... +.. + + .+ .....+..|+|+.|..+.... +. ...+|
T Consensus 209 ~g~~~---~~~--v------~-----------~l------------a~~~~i~ii~t~~dt~~t~~~----l~--~~~~V 248 (546)
T PRK14869 209 GGAPV---SED--V------L-----------EL------------AKENGVTVISTPYDTFTTARL----IN--QSIPV 248 (546)
T ss_pred CCCCC---CHH--H------H-----------HH------------HHhCCCeEEEecccHHHHHHH----hh--cCCCH
Confidence 32210 000 0 0 00 012245678999999887643 11 13456
Q ss_pred ccccCcC-CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhc
Q 013939 214 SSLGVIN-PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMG 291 (433)
Q Consensus 214 ~~L~im~-~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~ 291 (433)
++ +|+ ++++++.+++++.+|.++|.+ ++..+||||+ +| +++|+||.+||...... . + ..
T Consensus 249 ~~--iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~--~g--~lvGiit~~dl~~~~~~-~-----------~-iL 309 (546)
T PRK14869 249 SY--IMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE--DG--KVVGVISRYHLLSPVRK-K-----------V-IL 309 (546)
T ss_pred HH--hccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcC--CC--CEEEEEEHHHhhccccC-c-----------e-EE
Confidence 65 699 899999999999999999999 8999999998 78 99999999999875311 0 0 00
Q ss_pred cccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEe---cCC
Q 013939 292 VEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTC---KIT 368 (433)
Q Consensus 292 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~---~p~ 368 (433)
++.+...+.+.. +.+... ..-+. + |+-...++..++++ ...
T Consensus 310 VD~~e~~q~~~~------~~~~~i--------~~iiD----H------------------H~~~~~~~~~pi~~~~~~~g 353 (546)
T PRK14869 310 VDHNEKSQAVEG------IEEAEI--------LEIID----H------------------HRLGDIQTSNPIFFRNEPVG 353 (546)
T ss_pred EcCccccccccc------hhhceE--------EEEec----C------------------CccCCCCCCCCcEEEeeeee
Confidence 111111000000 000000 00000 0 00001235555544 335
Q ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939 369 SSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVA 409 (433)
Q Consensus 369 ~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~ 409 (433)
++-.-+...|.++++.-.|++.. ..+.||+|-++.++.
T Consensus 354 st~tiv~~~~~~~~i~~~~~ia~---~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 354 STSTIVARMYRENGIEPSPEIAG---LLLAAILSDTLLFKS 391 (546)
T ss_pred eHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHhcCccC
Confidence 66667888888999998888877 589999999998764
No 15
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.43 E-value=5.2e-13 Score=134.41 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=94.7
Q ss_pred CcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhh
Q 013939 212 SISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQF 288 (433)
Q Consensus 212 tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f 288 (433)
++++ +|++ +++++.+++++.+|++.|.+ +++.+||+|+ +| +++|+||.+|+++.. ..
T Consensus 203 ~V~d--im~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~--~g--~lvGivt~~Dl~~~~--------~~------ 262 (326)
T PRK10892 203 RVSD--IMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD--NM--KIEGIFTDGDLRRVF--------DM------ 262 (326)
T ss_pred cHHH--HhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC--CC--cEEEEEecHHHHHHH--------hc------
Confidence 4554 6887 89999999999999999988 7888888887 78 999999999997542 00
Q ss_pred hhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCC
Q 013939 289 VMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKIT 368 (433)
Q Consensus 289 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~ 368 (433)
+ .++. . . .+ . ..|+.+++++.++
T Consensus 263 -----~-~~~~---~---------~-----------------~v-----------------~-----~im~~~~~~v~~~ 285 (326)
T PRK10892 263 -----G-IDLR---Q---------A-----------------SI-----------------A-----DVMTPGGIRVRPG 285 (326)
T ss_pred -----C-CCcc---c---------C-----------------CH-----------------H-----HhcCCCCEEECCC
Confidence 0 0000 0 0 00 0 2367799999999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939 369 SSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVA 409 (433)
Q Consensus 369 ~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~ 409 (433)
+++.+|+.+|.+++++++||+|+ ++++||||++||+++
T Consensus 286 ~~l~~a~~~m~~~~~~~lpVv~~---~~lvGiit~~dil~~ 323 (326)
T PRK10892 286 ILAVDALNLMQSRHITSVLVADG---DHLLGVLHMHDLLRA 323 (326)
T ss_pred CCHHHHHHHHHHCCCcEEEEeeC---CEEEEEEEhHHhHhc
Confidence 99999999999999999999986 799999999999975
No 16
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=1.4e-12 Score=110.92 Aligned_cols=97 Identities=13% Similarity=0.270 Sum_probs=76.5
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
++++++++++++.+|++.|.++++.++||+|.+ ++++|+++..|++.++.... .. ....++.
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-------------~~~~Giv~~~dl~~~~~~~~-~~----~~~~~~~ 62 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDEN-------------GKVVDVYSRFDVINLAKEGA-YN----NLDLTVG 62 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-------------CeEEEEEeHHHHHHHHhcCc-cc----cccCCHH
Confidence 367899999999999999999999999999863 79999999999998764321 10 0011222
Q ss_pred ------hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 98 ------QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 98 ------~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
.+|. .++.++.+++++.++++.|. ++++++||+++
T Consensus 63 ~~~~~~~~~~---~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~ 104 (120)
T cd04641 63 EALERRSQDF---EGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE 104 (120)
T ss_pred HHHhhcccCC---CCCeEEcCCCcHHHHHHHHHhcCccEEEEECC
Confidence 2333 24889999999999999999 78999999864
No 17
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.40 E-value=5.3e-13 Score=139.88 Aligned_cols=120 Identities=20% Similarity=0.241 Sum_probs=101.2
Q ss_pred CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939 218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV 296 (433)
Q Consensus 218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~ 296 (433)
+++.+.+++++.+++.+|+++|.+ +++++.++++ ++ ++.||||.+|+++... + +
T Consensus 154 ~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~--~~--~~~GIvT~~dl~~~v~-------~-----------~--- 208 (610)
T COG2905 154 VKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD--SG--PLLGIVTRKDLRSRVI-------A-----------D--- 208 (610)
T ss_pred HhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC--CC--CccceeehHHHHHHHH-------h-----------c---
Confidence 578899999999999999999999 9999999998 88 9999999999987641 0 0
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHH
Q 013939 297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMA 376 (433)
Q Consensus 297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~ 376 (433)
+... - ..+ + +.|+.|++++.+.+-+-+||-
T Consensus 209 -----------------g~~~------~-----~~V-----------------~-----evmT~p~~svd~~~~~feAml 238 (610)
T COG2905 209 -----------------GRSK------T-----QKV-----------------S-----EVMTSPVISVDRGDFLFEAML 238 (610)
T ss_pred -----------------CCCc------c-----cch-----------------h-----hhhccCceeecCcchHHHHHH
Confidence 0000 0 011 1 458999999999999999999
Q ss_pred HHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 377 QMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 377 ~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
.|..++||||||+++ |+++||||.+|||+.+...+.
T Consensus 239 ~m~r~~I~hl~V~e~---gq~~Gilt~~dIl~l~s~~~~ 274 (610)
T COG2905 239 MMLRNRIKHLPVTED---GQPLGILTLTDILRLFSQNSI 274 (610)
T ss_pred HHHHhCCceeeeecC---CeeeEEeeHHHHHHhhCCCce
Confidence 999999999999999 899999999999999986543
No 18
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.40 E-value=2e-12 Score=136.84 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=99.7
Q ss_pred CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939 218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV 296 (433)
Q Consensus 218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~ 296 (433)
+|.++++++.+++++.+|+++|.+ +++.+||+|+ ++ +++|+||.+|+......
T Consensus 94 iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~--~g--klvGIVT~rDL~~~~~~---------------------- 147 (479)
T PRK07807 94 LVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDE--EG--RPVGVVTEADCAGVDRF---------------------- 147 (479)
T ss_pred ccccCCeEECCCCCHHHHHHHHHhcCCceEEEECC--CC--eEEEEEeHHHHhcCccC----------------------
Confidence 688899999999999999999999 8999999997 78 99999999998643200
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHH
Q 013939 297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMA 376 (433)
Q Consensus 297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~ 376 (433)
. .+ . ..|+.+++++.++++|.+++.
T Consensus 148 ----------------~-----------------~V------~----------------diMt~~~itV~~d~sL~eAl~ 172 (479)
T PRK07807 148 ----------------T-----------------QV------R----------------DVMSTDLVTLPAGTDPREAFD 172 (479)
T ss_pred ----------------C-----------------CH------H----------------HhccCCceEECCCCcHHHHHH
Confidence 0 00 0 225779999999999999999
Q ss_pred HHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 377 QMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 377 ~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
+|.+++++++||||++ ++++||||..||++....+|.
T Consensus 173 lM~~~~i~~LPVVD~~--g~lvGIIT~~DIl~~~~~~~~ 209 (479)
T PRK07807 173 LLEAARVKLAPVVDAD--GRLVGVLTRTGALRATIYTPA 209 (479)
T ss_pred HHHhcCCCEEEEEcCC--CeEEEEEEHHHHHHHhhCCch
Confidence 9999999999999987 899999999999999988754
No 19
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.40 E-value=1.8e-12 Score=110.12 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=87.6
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.+++++.+|++.|.. ++..+||+|+ +| +++|++|..|+++.... .
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~--~~--~~~Givt~~dl~~~~~~-------------------~------ 52 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE--DG--DLVGVVSRKDLLKASIG-------------------G------ 52 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC--CC--CEEEEEEHHHHHHHHHc-------------------C------
Confidence 57899999999999999987 8999999997 78 99999999999764200 0
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCC--CCCeEecCCCCHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGR--STPLTCKITSSLAAVMAQM 378 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~it~~p~~sL~~v~~~m 378 (433)
..... ..+ + ..|. .++.+|++++++.+++.+|
T Consensus 53 ------------~~~~~------------~~~------~----------------~~~~~~~~~~~v~~~~~l~~~~~~~ 86 (118)
T cd04617 53 ------------ADLQK------------VPV------G----------------VIMTRMPNITTTTPEESVLEAAKKL 86 (118)
T ss_pred ------------CCccC------------CCH------H----------------HHhCCCCCcEEECCCCcHHHHHHHH
Confidence 00000 000 0 1123 3688999999999999999
Q ss_pred HHcCCCEEEEEeCCC-CCeEEEEEeHHHHHH
Q 013939 379 LSHRATHVWVTEDES-DDVLVGVVGYADILV 408 (433)
Q Consensus 379 ~~~~vhrl~VVD~~~-~~~lvGIVs~~DIL~ 408 (433)
.+++++++||||+++ +++++|+||++||++
T Consensus 87 ~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 87 IEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 999999999999852 159999999999975
No 20
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=4.5e-12 Score=108.25 Aligned_cols=117 Identities=15% Similarity=0.188 Sum_probs=88.1
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
++.++.+++++.+|++.|.+ +++.+||+|+ + | +++|+++..|+++..... ....+..++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~~--~~~Giv~~~dl~~~~~~~----~~~~~~~~~~~--------- 64 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE--ESG--EVIGILSQRRLVEFLWEN----ARSFPGLDPLY--------- 64 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeC--CCC--cEEEEEEHHHHHHHHHHh----HHhccchhhhh---------
Confidence 57889999999999999998 8999999997 6 8 999999999998642100 00000000000
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML 379 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~ 379 (433)
+. .... . ..+..++.++.+++++.+|+++|.
T Consensus 65 -------------~~----------------~~~~--------------~------~~~~~~~~~v~~~~~l~~a~~~m~ 95 (123)
T cd04627 65 -------------PI----------------PLRD--------------L------TIGTSDVISINGDQPLIDALHLMH 95 (123)
T ss_pred -------------hh----------------hhhh--------------c------ccCcCCceEeCCCCCHHHHHHHHH
Confidence 00 0000 0 124678899999999999999999
Q ss_pred HcCCCEEEEEeCCCCCeEEEEEeHHHH
Q 013939 380 SHRATHVWVTEDESDDVLVGVVGYADI 406 (433)
Q Consensus 380 ~~~vhrl~VVD~~~~~~lvGIVs~~DI 406 (433)
+++++++||+|++ ++++|+||..||
T Consensus 96 ~~~~~~lpVvd~~--~~~vGiit~~di 120 (123)
T cd04627 96 NEGISSVAVVDNQ--GNLIGNISVTDV 120 (123)
T ss_pred HcCCceEEEECCC--CcEEEEEeHHHh
Confidence 9999999999997 899999999997
No 21
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.39 E-value=6.4e-13 Score=114.86 Aligned_cols=113 Identities=13% Similarity=0.148 Sum_probs=89.3
Q ss_pred CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939 221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
++++++.+++++.+|++.|.+ +++.+||+|+ +| +++|+||.+|++...... .. .+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~--~~--~~~Gii~~~dl~~~~~~~----~~---------------~~- 57 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE--SG--KILGMVTLGNLLSSLSSG----KV---------------QP- 57 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC--CC--CEEEEEEHHHHHHHHHHh----cc---------------CC-
Confidence 357899999999999999998 8999999997 78 999999999997642000 00 00
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHH-
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQM- 378 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m- 378 (433)
. ..+ + +.|..++.+|++++++.+++++|
T Consensus 58 --------------~---------------~~v-----------------~-----~im~~~~~~v~~~~~~~~v~~~~~ 86 (124)
T cd04608 58 --------------S---------------DPV-----------------S-----KALYKQFKRVNKNDTLGKLSRILE 86 (124)
T ss_pred --------------C---------------CcH-----------------H-----HHhhccceecCCCCCHHHHHhhcc
Confidence 0 000 0 33688999999999999999965
Q ss_pred --------HHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHH
Q 013939 379 --------LSHRATHVWVTEDESDDVLVGVVGYADILVAV 410 (433)
Q Consensus 379 --------~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i 410 (433)
.+++.+++||+|++ |+++||||.+||++++
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~--~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 87 TDAFLLVFFEQISSAAIGKEKQ--EKPIGIVTKIDLLSYI 124 (124)
T ss_pred cCCceEEEeccccccccccccc--cceEEEEehhHhhhhC
Confidence 34478999999987 8999999999999864
No 22
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=2.5e-12 Score=108.22 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=88.0
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
+++++.+++++.+|++.|.+ +.+.+||+|+ + | +++|+++.+|+++.... . ...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~--~~~G~v~~~dl~~~~~~-------~------------~~~~- 57 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR--RES--DAYGIVTMRDILKKVVA-------E------------GRDP- 57 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CCC--cEEEEEehHHHHHHHHh-------C------------CCCC-
Confidence 57899999999999999988 8899999997 6 7 99999999999763200 0 0000
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML 379 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~ 379 (433)
.. ..+ + ..+..++.+|.+++++.+++.+|.
T Consensus 58 -------------~~---------------~~v------~----------------~~~~~~~~~v~~~~~l~~~~~~~~ 87 (114)
T cd04630 58 -------------DR---------------VNV------Y----------------EIMTKPLISVSPDMDIKYCARLME 87 (114)
T ss_pred -------------Cc---------------cCH------H----------------HHhcCCCeeECCCCCHHHHHHHHH
Confidence 00 000 0 124568899999999999999999
Q ss_pred HcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939 380 SHRATHVWVTEDESDDVLVGVVGYADILVA 409 (433)
Q Consensus 380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~ 409 (433)
+++.+++||+|+ |+++|+||+.||+++
T Consensus 88 ~~~~~~~~Vvd~---~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 88 RTNIRRAPVVEN---NELIGIISLTDIFLA 114 (114)
T ss_pred HcCCCEeeEeeC---CEEEEEEEHHHhhcC
Confidence 999999999997 799999999999863
No 23
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=3.6e-12 Score=108.30 Aligned_cols=122 Identities=16% Similarity=0.236 Sum_probs=91.8
Q ss_pred CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939 221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
++++++.++.++.++++.|.+ ++..+||+++ +| +++|+++.+||+.+......... .++..+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~--~~~Giv~~~~l~~~~~~~~~~~~-----~~~~~~-------- 64 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDG--DR--RLVGIVTQRDLLRHARPDGRRPL-----RGRLRG-------- 64 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECC--CC--CEEEEEEHHHHHhhhcccccchh-----hhhhhc--------
Confidence 568899999999999999998 8899999997 78 99999999999765311000000 000000
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML 379 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~ 379 (433)
.... ..+ + ..+..+++++.+++++.+++++|.
T Consensus 65 --------------~~~~------------~~i-----------------~-----~~~~~~~~~~~~~~~l~~~~~~~~ 96 (124)
T cd04600 65 --------------RDKP------------ETV-----------------G-----DIMSPPVVTVRPDTPIAELVPLLA 96 (124)
T ss_pred --------------cccc------------ccH-----------------H-----HhccCCCeeeCCCCcHHHHHHHHH
Confidence 0000 000 0 224678999999999999999999
Q ss_pred HcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939 380 SHRATHVWVTEDESDDVLVGVVGYADILVA 409 (433)
Q Consensus 380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~ 409 (433)
+++.+++||+|++ |+++|+||..|++++
T Consensus 97 ~~~~~~~~Vv~~~--g~~~Gvit~~di~~~ 124 (124)
T cd04600 97 DGGHHHVPVVDED--RRLVGIVTQTDLIAA 124 (124)
T ss_pred hcCCCceeEEcCC--CCEEEEEEhHHhhcC
Confidence 9999999999987 999999999999864
No 24
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=3.7e-12 Score=107.00 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=85.5
Q ss_pred CeEEEcCCCcHHHHHHhccc-C-CCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-D-PSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~-isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
++.++.+++++.+|++.|.+ + .+.+||+|+ +| +++|+++.+|++..... .....++.
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~--~~--~~~G~v~~~dl~~~~~~----~~~~~~v~------------- 60 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN--EG--RYVGIISLADLRAIPTS----QWAQTTVI------------- 60 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC--CC--cEEEEEEHHHHHHHHHh----hccccchh-------------
Confidence 57899999999999999976 5 788999997 78 99999999999764300 00000000
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML 379 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~ 379 (433)
.+ +....++.++.+++++.++++.|.
T Consensus 61 -------------------------------~~-----------------------~~~~~~~~~v~~~~~l~~a~~~~~ 86 (114)
T cd04801 61 -------------------------------QV-----------------------MTPAAKLVTVLSEESLAEVLKLLE 86 (114)
T ss_pred -------------------------------hh-----------------------hcccccceEECCCCcHHHHHHHHH
Confidence 00 001124679999999999999999
Q ss_pred HcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 380 SHRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
+++.+++||+|++ |+++||||..||++
T Consensus 87 ~~~~~~l~Vv~~~--~~~~Gvl~~~di~~ 113 (114)
T cd04801 87 EQGLDELAVVEDS--GQVIGLITEADLLR 113 (114)
T ss_pred HCCCCeeEEEcCC--CcEEEEEeccceec
Confidence 9999999999987 89999999999875
No 25
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.36 E-value=5e-12 Score=106.32 Aligned_cols=113 Identities=16% Similarity=0.200 Sum_probs=89.6
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
++.++.+++++.+|++.|.+ +.+.++|+|+ +| +++|+++.+||++.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~--~~~G~v~~~dl~~~~~~~------------------------- 52 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR--DG--GVVGIITLPDLLRALEAD------------------------- 52 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC--CC--CEEEEEEHHHHHHHHhcc-------------------------
Confidence 56789999999999999998 8999999998 78 999999999998643000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
..... ..+. ..+..++.+|.+++++.+++++|.+
T Consensus 53 ------------~~~~~------------~~~~----------------------~~~~~~~~~v~~~~~l~~~l~~~~~ 86 (115)
T cd04593 53 ------------EAGEP------------SAVD----------------------EVATPPLLTVHPDEPLAHALDRMAS 86 (115)
T ss_pred ------------ccccc------------ccHH----------------------HhccCCceEECCCCCHHHHHHHHHH
Confidence 00000 0000 1146689999999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILVA 409 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~~ 409 (433)
++.+++||+|++.+|+++|+||.+||+++
T Consensus 87 ~~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 87 RGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred cCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 99999999987423699999999999864
No 26
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.35 E-value=8.9e-12 Score=125.46 Aligned_cols=107 Identities=20% Similarity=0.294 Sum_probs=88.7
Q ss_pred cchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCc
Q 013939 6 IYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCL 85 (433)
Q Consensus 6 ~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l 85 (433)
...+|+|+|...++++++++++|+.+|++.|.++++..+||+|.+ ++++|+||..|+.+.+..+...
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~-------------g~lvGivt~~Dl~~~~~~~~~~ 266 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN-------------MKIEGIFTDGDLRRVFDMGIDL 266 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC-------------CcEEEEEecHHHHHHHhcCCCc
Confidence 345689999633488999999999999999999999888888753 7999999999998754332111
Q ss_pred chHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeee
Q 013939 86 EDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPK 134 (433)
Q Consensus 86 ~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~ 134 (433)
.+.+|+++|.++ ++++.+++++.+|++.|. ++++++||.+
T Consensus 267 ------~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVv~ 307 (326)
T PRK10892 267 ------RQASIADVMTPG---GIRVRPGILAVDALNLMQSRHITSVLVAD 307 (326)
T ss_pred ------ccCCHHHhcCCC---CEEECCCCCHHHHHHHHHHCCCcEEEEee
Confidence 136899999865 899999999999999999 8999999975
No 27
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.35 E-value=3.8e-12 Score=114.58 Aligned_cols=134 Identities=17% Similarity=0.193 Sum_probs=97.9
Q ss_pred HHHHHHHHHccCCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhh
Q 013939 192 EDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWK 270 (433)
Q Consensus 192 ~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~ 270 (433)
..|+++|.++.. . .-+.. .+|+++|+.+.|++++.+|+++|.+ ++|-+||+++ | ++||-||++|+.+
T Consensus 51 k~Il~aL~e~e~--~---~ita~--~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~---~--k~VGsItE~~iv~ 118 (187)
T COG3620 51 KRILEALEEAEK--T---RITAK--TIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE---D--KVVGSITENDIVR 118 (187)
T ss_pred HHHHHHHHHhhc--c---eEeHh--hhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC---C--eeeeeecHHHHHH
Confidence 667777766544 1 11122 3799999999999999999999999 9999999995 7 9999999999987
Q ss_pred cchhHHHHHHhhccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCC
Q 013939 271 CDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFG 350 (433)
Q Consensus 271 ~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (433)
...++. +++.. .
T Consensus 119 ~~le~~----------------------e~i~~----------------------------~------------------ 130 (187)
T COG3620 119 ALLEGM----------------------ESIRS----------------------------L------------------ 130 (187)
T ss_pred HHhccc----------------------cchhh----------------------------h------------------
Confidence 641100 00000 0
Q ss_pred CCccccCCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 351 TGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 351 ~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
+--+.|..+.-+++|+++|..+-.++-.|. -+-|+++ |+++||||..||++.++.
T Consensus 131 --~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e~---G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 131 --RVREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVVEN---GKVVGIITKADIMKLLAG 185 (187)
T ss_pred --hHHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEEeC---CceEEEEeHHHHHHHHhc
Confidence 000235666679999999987776665554 4677766 899999999999998764
No 28
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=9.1e-12 Score=104.75 Aligned_cols=93 Identities=15% Similarity=0.174 Sum_probs=78.3
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
+++++++++++.+|++.|.+++.+.+||+|.+ ++++|+++..|+.+.... ...+.+|.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-------------~~~~G~v~~~dl~~~~~~--------~~~~~~v~~ 60 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEE-------------NKVLGQVTLSDLLEIGPN--------DYETLKVCE 60 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-------------CCEEEEEEHHHHHhhccc--------cccccChhh
Confidence 35889999999999999999999999999863 799999999999874211 112367999
Q ss_pred ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
+|... +.++.+++++.+|++.|. ++.+++||+++
T Consensus 61 ~~~~~---~~~v~~~~~l~~al~~m~~~~~~~lpVvd~ 95 (111)
T cd04603 61 VYIVP---VPIVYCDSKVTDLLRIFRETEPPVVAVVDK 95 (111)
T ss_pred eeecC---CcEECCCCcHHHHHHHHHHcCCCeEEEEcC
Confidence 99754 889999999999999999 78999999864
No 29
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.35 E-value=4.6e-12 Score=109.48 Aligned_cols=85 Identities=18% Similarity=0.251 Sum_probs=72.6
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
++++++++++++.+|++.|.++++.++||+|.+ ++++|+++..|++..+.... ...+.+|+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-------------~~~~Gii~~~dl~~~~~~~~------~~~~~~v~ 62 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES-------------GKILGMVTLGNLLSSLSSGK------VQPSDPVS 62 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-------------CCEEEEEEHHHHHHHHHHhc------cCCCCcHH
Confidence 467899999999999999999999999999863 78999999999998765421 11357999
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK 124 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~ 124 (433)
++|.++ ++++.+++++.++.++|.
T Consensus 63 ~im~~~---~~~v~~~~~~~~v~~~~~ 86 (124)
T cd04608 63 KALYKQ---FKRVNKNDTLGKLSRILE 86 (124)
T ss_pred HHhhcc---ceecCCCCCHHHHHhhcc
Confidence 999865 999999999999999764
No 30
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=7.8e-12 Score=106.74 Aligned_cols=116 Identities=22% Similarity=0.332 Sum_probs=90.1
Q ss_pred ccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCCCCCCCcCCCCC
Q 013939 106 LLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTTSVRD 184 (433)
Q Consensus 106 ~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (433)
++.++.+++++.+|++.|. +++++++|.++.. ++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~---------------------------------------------~~ 36 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEES---------------------------------------------GE 36 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCC---------------------------------------------Cc
Confidence 5888999999999999999 6789999976530 24
Q ss_pred eEEEeeHHHHHHHHHHccCCC---CCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEE
Q 013939 185 KFCCLSREDVIRFLIGCLGAL---APLPLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKII 260 (433)
Q Consensus 185 ~~~iiTq~Dvi~~l~~~~~~l---~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klv 260 (433)
..|+||+.|+++++.++.... .......+....+|..++.++.+++++.+|++.|.+ +...+||||+ +| +++
T Consensus 37 ~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~--~~v 112 (123)
T cd04627 37 VIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDN--QG--NLI 112 (123)
T ss_pred EEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC--CC--cEE
Confidence 579999999999875432211 110001122223678889999999999999999999 8999999998 78 999
Q ss_pred eecchhhhhh
Q 013939 261 GEISASKLWK 270 (433)
Q Consensus 261 GiIS~~DL~~ 270 (433)
|+||.+|++.
T Consensus 113 Giit~~di~~ 122 (123)
T cd04627 113 GNISVTDVRL 122 (123)
T ss_pred EEEeHHHhhc
Confidence 9999999874
No 31
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=9e-12 Score=106.92 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=89.1
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.+++++.+|+++|.+ +.+.+||+|+ +| +++|+||.+||..+........... ..++.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~--~~--~~~G~it~~dl~~~~~~~~~~~~~~------------~~~~~- 64 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDD--NG--KLTGIVTRHDIVDFVVRDRDKARTG------------DRSGE- 64 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECC--CC--cEEEEEEHHHHHHHHhhhhhhcchh------------hhhhh-
Confidence 56789999999999999999 8999999998 78 9999999999975421100000000 00000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
.. .+....+ ...+..++++|.+++++.+++..|.+
T Consensus 65 ------------~~-----------~~~~~~~----------------------~~~~~~~~~~v~~~~~l~~~l~~~~~ 99 (128)
T cd04632 65 ------------KE-----------RMLDLPV----------------------YDAMSSPVITASPNDSVRDAVDRMLE 99 (128)
T ss_pred ------------hh-----------hhccCcH----------------------HHHhcCCCceECCCCcHHHHHHHHHh
Confidence 00 0000000 02256789999999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||++++.+++++|+||..||++
T Consensus 100 ~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 100 NDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred CCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 9999999996412389999999999986
No 32
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.34 E-value=7.8e-12 Score=104.16 Aligned_cols=107 Identities=19% Similarity=0.202 Sum_probs=87.7
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
+++++.++.++.+|+++|.+ +.+.+||+++ + | +++|+++..||+.+... . + .
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~--~~~--~~~G~v~~~~l~~~~~~-------~-----~---------~- 55 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDG--DLD--NIIGVVHVKDLLRALAE-------G-----E---------E- 55 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECC--CCc--eEEEEEEHHHHHHHHHc-------C-----C---------C-
Confidence 57899999999999999988 8899999997 6 8 99999999999865300 0 0 0
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML 379 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~ 379 (433)
. . .+ ..+..++.++.+++++.++++.|.
T Consensus 56 -------------~---~-------------~~-----------------------~~~~~~~~~v~~~~~l~~~~~~~~ 83 (111)
T cd04590 56 -------------D---L-------------DL-----------------------RDLLRPPLFVPESTPLDDLLEEMR 83 (111)
T ss_pred -------------c---C-------------CH-----------------------HHHhcCCeecCCCCcHHHHHHHHH
Confidence 0 0 00 001246789999999999999999
Q ss_pred HcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 380 SHRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
+++.+++||+|++ |+++|+||+.|+++
T Consensus 84 ~~~~~~~~Vv~~~--~~~~Gvit~~di~~ 110 (111)
T cd04590 84 KERSHMAIVVDEY--GGTAGLVTLEDILE 110 (111)
T ss_pred hcCCcEEEEEECC--CCEEEEeEHHHhhc
Confidence 9999999999997 89999999999975
No 33
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=1.1e-11 Score=103.27 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=87.7
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
++.++.+++++.+|++.|.+ +.+.+||+|+ +| +++|+++..|++.... ..++.
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~--~~--~~~G~v~~~~l~~~~~--------~~~v~-------------- 56 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE--KN--KVVGIVTSKDVAGKDP--------DTTIE-------------- 56 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECC--CC--eEEEEecHHHHhcccc--------cccHH--------------
Confidence 57899999999999999988 8889999997 78 9999999999975320 00000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
..+..++.+|.+++++.+++.+|.+
T Consensus 57 -------------------------------------------------------~~~~~~~~~v~~~~~l~~~~~~~~~ 81 (108)
T cd04596 57 -------------------------------------------------------KVMTKNPITVNPKTSVASVAHMMIW 81 (108)
T ss_pred -------------------------------------------------------HHhcCCCeEECCCCCHHHHHHHHHH
Confidence 1135578899999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||+|++ |+++|+||+.||++
T Consensus 82 ~~~~~~~Vv~~~--~~~~G~it~~di~~ 107 (108)
T cd04596 82 EGIEMLPVVDDN--KKLLGIISRQDVLK 107 (108)
T ss_pred cCCCeeeEEcCC--CCEEEEEEHHHhhc
Confidence 999999999987 89999999999986
No 34
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.34 E-value=4.6e-12 Score=127.08 Aligned_cols=120 Identities=13% Similarity=0.177 Sum_probs=97.4
Q ss_pred CCCcccccCcCCC--eEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccch
Q 013939 210 LSSISSLGVINPN--YSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAG 286 (433)
Q Consensus 210 ~~tV~~L~im~~~--vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~ 286 (433)
..+|++ +|.++ ++++++++++.+|++.|.+ +.+.+||||+ +| +++|+||.+|+++....
T Consensus 196 ~~~V~~--im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~--~g--~~iG~vt~~dl~~~~~~------------ 257 (321)
T PRK11543 196 LNKVHH--LMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA--QQ--QVQGVFTDGDLRRWLVG------------ 257 (321)
T ss_pred HhHHHH--HhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC--CC--cEEEEecHHHHHHHHhC------------
Confidence 345555 68887 9999999999999999988 7899999998 78 99999999999764200
Q ss_pred hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939 287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK 366 (433)
Q Consensus 287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 366 (433)
+ ..+. . .+ + +.|..+++++.
T Consensus 258 -------~-~~~~-------------~-----------------~v-----------------~-----~im~~~~~~v~ 277 (321)
T PRK11543 258 -------G-GALT-------------T-----------------PV-----------------N-----EAMTRGGTTLQ 277 (321)
T ss_pred -------C-CCcC-------------C-----------------cH-----------------H-----HhcCCCCEEEC
Confidence 0 0000 0 00 0 22577899999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939 367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVA 409 (433)
Q Consensus 367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~ 409 (433)
+++++.+++++|.++++.++||||++ |+++|+||+.||+++
T Consensus 278 ~~~~l~~a~~~m~~~~~~~lpVvd~~--~~lvGvIt~~di~~~ 318 (321)
T PRK11543 278 AQSRAIDAKEILMKRKITAAPVVDEN--GKLTGAINLQDFYQA 318 (321)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEcCC--CeEEEEEEHHHHHhc
Confidence 99999999999999999999999987 899999999999974
No 35
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=8.6e-12 Score=104.51 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=86.7
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.+++++.+|++.|.+ +++.+||+|+ +| +++|+++.+|++++........+. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~--~~~Giv~~~dl~~~~~~~~~~~~~------------------~ 59 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK--EG--KYVGTISLTDILWKLKGLENLDLE------------------R 59 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC--CC--cEEEEEeHHHHHHHhhccCchhHH------------------H
Confidence 57899999999999999988 8999999997 78 999999999998753100000000 0
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
+. . ..+. ..+..++.++.+++++.+++..|.+
T Consensus 60 ~~-----------~---------------~~v~----------------------~~~~~~~~~v~~~~~l~~a~~~~~~ 91 (116)
T cd04643 60 LV-----------D---------------LKVI----------------------DVMNTDVPVIIDDADIEEILHLLID 91 (116)
T ss_pred Hh-----------C---------------CcHH----------------------HHhcCCCceecCCCCHHHHHHHHhc
Confidence 00 0 0000 1246678999999999999999988
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILVA 409 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~~ 409 (433)
++ .+||+|++ |+++||||..||+++
T Consensus 92 ~~--~~~Vv~~~--~~~~Gvit~~dil~~ 116 (116)
T cd04643 92 QP--FLPVVDDD--GIFIGIITRREILKA 116 (116)
T ss_pred CC--ceeEEeCC--CeEEEEEEHHHhhcC
Confidence 65 59999987 899999999999864
No 36
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.33 E-value=4.8e-12 Score=132.81 Aligned_cols=128 Identities=20% Similarity=0.297 Sum_probs=108.6
Q ss_pred ccccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcC
Q 013939 3 SVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKS 82 (433)
Q Consensus 3 ~~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~ 82 (433)
..|.-+++++++. .+.++|++.+++.+|...|.++|++++-+++.. +...||||..|+...+..+
T Consensus 144 ~e~~~trv~~~~~--~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-------------~~~~GIvT~~dl~~~v~~~ 208 (610)
T COG2905 144 SEFILTRVGEVKT--LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-------------GPLLGIVTRKDLRSRVIAD 208 (610)
T ss_pred chHHHHHHHHHhc--CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-------------CCccceeehHHHHHHHHhc
Confidence 3466678888886 456999999999999999999999998888863 7899999999999987653
Q ss_pred CCcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccC
Q 013939 83 DCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASN 161 (433)
Q Consensus 83 ~~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 161 (433)
.. -..+||+++|+.+ ++++++++-++||+-+|+ ++|||+||.+++
T Consensus 209 g~------~~~~~V~evmT~p---~~svd~~~~~feAml~m~r~~I~hl~V~e~g------------------------- 254 (610)
T COG2905 209 GR------SKTQKVSEVMTSP---VISVDRGDFLFEAMLMMLRNRIKHLPVTEDG------------------------- 254 (610)
T ss_pred CC------CcccchhhhhccC---ceeecCcchHHHHHHHHHHhCCceeeeecCC-------------------------
Confidence 12 2248999999964 999999999999999999 899999997653
Q ss_pred ccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHc
Q 013939 162 SSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGC 201 (433)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~ 201 (433)
+++||||.+||++.+..|
T Consensus 255 ----------------------q~~Gilt~~dIl~l~s~~ 272 (610)
T COG2905 255 ----------------------QPLGILTLTDILRLFSQN 272 (610)
T ss_pred ----------------------eeeEEeeHHHHHHhhCCC
Confidence 468999999999988543
No 37
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.33 E-value=1.6e-11 Score=101.48 Aligned_cols=103 Identities=16% Similarity=0.231 Sum_probs=86.7
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.++.++.+|++.|.+ +...++|+|+ +| +++|++|..|++... . . ++.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~--~g--~~~Giv~~~dl~~~~-~-------~-~~~-------------- 54 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA--DG--QPLGFVTRREAARAS-G-------G-CCG-------------- 54 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC--CC--CEEEEEeHHHHHHhc-c-------c-chh--------------
Confidence 57789999999999999988 8889999997 78 999999999997532 0 0 000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
..+...+.++.+++++.+++++|.+
T Consensus 55 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (106)
T cd04582 55 -------------------------------------------------------DHAEPFKVTVSVDDDLRIVLSRMFA 79 (106)
T ss_pred -------------------------------------------------------hhcccCCEEECCCCCHHHHHHHHHH
Confidence 1134466789999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++++++||+|++ ++++|+||..|+++
T Consensus 80 ~~~~~~~Vv~~~--~~~~Gvi~~~~l~~ 105 (106)
T cd04582 80 HDMSWLPCVDED--GRYVGEVTQRSIAD 105 (106)
T ss_pred CCCCeeeEECCC--CcEEEEEEHHHhhc
Confidence 999999999987 89999999999975
No 38
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=1.1e-11 Score=105.31 Aligned_cols=123 Identities=20% Similarity=0.231 Sum_probs=90.6
Q ss_pred CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCC
Q 013939 221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTP 298 (433)
Q Consensus 221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~ 298 (433)
++++++.++.++.+|+++|.+ +...+||+|+ + | +++|+|+..||..+..... .+....
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~--~~~--~~~G~v~~~dl~~~~~~~~--~~~~~~-------------- 60 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE--GTG--KLVGIITATDILKYLGGGE--KFNKIK-------------- 60 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCcccceeEeC--CCC--EEEEEEEHHHHHHHhhccc--hhcccc--------------
Confidence 357889999999999999998 8889999997 6 8 9999999999986531100 000000
Q ss_pred CCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHH
Q 013939 299 RSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQM 378 (433)
Q Consensus 299 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m 378 (433)
. . ..... . ...+ ...+..++.+|.+++++.++++.|
T Consensus 61 ----~---~-----~~~~~------~----~~~~----------------------~~~~~~~~~~v~~~~~l~~~~~~~ 96 (125)
T cd04631 61 ----T---G-----NGLEA------I----NEPV----------------------RSIMTRNVITITPDDSIKDAAELM 96 (125)
T ss_pred ----c---c-----ccchh------h----hcCH----------------------HHHhcCCceEeCCCCcHHHHHHHH
Confidence 0 0 00000 0 0000 022466899999999999999999
Q ss_pred HHcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939 379 LSHRATHVWVTEDESDDVLVGVVGYADILVA 409 (433)
Q Consensus 379 ~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~ 409 (433)
.+++.++++|+|++ |+++|+||..||+++
T Consensus 97 ~~~~~~~~~V~~~~--~~~~Gvit~~di~~~ 125 (125)
T cd04631 97 LEKRVGGLPVVDDD--GKLVGIVTERDLLKA 125 (125)
T ss_pred HHcCCceEEEEcCC--CcEEEEEEHHHhhcC
Confidence 99999999999987 899999999999863
No 39
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=2e-11 Score=102.01 Aligned_cols=110 Identities=18% Similarity=0.183 Sum_probs=88.3
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
++.++.+++++.+|++.|.+ +.+.+||+|+ +| +++|+++..|+++..... ..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~--~~--~~~G~v~~~dl~~~~~~~--~~~~------------------- 56 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDD--KK--RLVGIITRYDVLSYALES--EELK------------------- 56 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcC--CC--CEEEEEEHHHHHHhhhhh--hhhc-------------------
Confidence 36788999999999999998 8899999997 78 999999999997642110 0000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
. . .+ . ..+..++.++.+++++.+++.+|.+
T Consensus 57 --~---------~-----------------~i------~----------------~~~~~~~~~v~~~~~l~~~~~~~~~ 86 (113)
T cd04615 57 --D---------A-----------------KV------R----------------EVMNSPVITIDANDSIAKARWLMSN 86 (113)
T ss_pred --C---------C-----------------cH------H----------------HhccCCceEECCCCcHHHHHHHHHH
Confidence 0 0 00 0 1145688999999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||+|++ |+++|+||..||++
T Consensus 87 ~~~~~~~Vvd~~--g~~~Gvvt~~dl~~ 112 (113)
T cd04615 87 NNISRLPVLDDK--GKVGGIVTEDDILR 112 (113)
T ss_pred cCCCeeeEECCC--CeEEEEEEHHHhhc
Confidence 999999999987 89999999999975
No 40
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=2.5e-11 Score=102.40 Aligned_cols=95 Identities=24% Similarity=0.383 Sum_probs=80.6
Q ss_pred eEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchhc
Q 013939 20 LAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQV 99 (433)
Q Consensus 20 lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~I 99 (433)
+.++++++++.+|++.|.+++...+||+|.+ ++++|+++..|+.+.+..... ...+.++.++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-------------g~~~G~vt~~dl~~~~~~~~~-----~~~~~~v~~~ 64 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPH-------------GKLAGVLTKTDVVRQMGRCGG-----PGCTAPVENV 64 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCC-------------CCEEEEEehHHHHHHHhhcCC-----CcccCCHHHH
Confidence 6789999999999999999999999999864 789999999999986643100 1124789999
Q ss_pred cccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 100 IVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 100 m~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
|..+ ++++.+++++.+|++.|. ++.+++||.++
T Consensus 65 ~~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 98 (114)
T cd04619 65 MTRA---VVSCRPGDLLHDVWQVMKQRGLKNIPVVDE 98 (114)
T ss_pred hcCC---CeeECCCCCHHHHHHHHHHcCCCeEEEECC
Confidence 9765 899999999999999999 78999999864
No 41
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=2.7e-11 Score=102.81 Aligned_cols=98 Identities=18% Similarity=0.194 Sum_probs=81.0
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
+++++++++++.+|++.|.++++..+||+|.+ ++++|+++..|+.+.+...... -..++++
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-------------~~~~Givt~~dl~~~~~~~~~~------~~~~~~~ 62 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-------------GDLVGVVSRKDLLKASIGGADL------QKVPVGV 62 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-------------CCEEEEEEHHHHHHHHHcCCCc------cCCCHHH
Confidence 56899999999999999999999999999863 6899999999999876432111 1356888
Q ss_pred ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939 99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV 136 (433)
Q Consensus 99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~ 136 (433)
+|... .+++++++++++.+|++.|. ++++++||++++
T Consensus 63 ~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~ 100 (118)
T cd04617 63 IMTRM-PNITTTTPEESVLEAAKKLIEHQVDSLPVVEKV 100 (118)
T ss_pred HhCCC-CCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCC
Confidence 98731 24889999999999999999 789999998754
No 42
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=1.7e-11 Score=101.88 Aligned_cols=110 Identities=17% Similarity=0.244 Sum_probs=87.8
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.++.++.++++.|.+ +++.+||+|+ ++ +++|+++..|+..+.... .. .+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~--~~--~~~Giv~~~~l~~~~~~~------------------~~-~~-- 56 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD--GG--RLVGIFSERDIVRKVALR------------------GA-SA-- 56 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECC--CC--CEEEEEehHHHHHHHhhc------------------CC-Cc--
Confidence 57789999999999999988 8999999997 78 999999999997643000 00 00
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
.. ..+ + ..+..++.++.+++++.++++.|.+
T Consensus 57 ------------~~---------------~~~-----------------~-----~~~~~~~~~v~~~~~~~~~l~~~~~ 87 (113)
T cd04623 57 ------------LD---------------TPV-----------------S-----EIMTRNVITVTPDDTVDEAMALMTE 87 (113)
T ss_pred ------------cc---------------cCH-----------------H-----HhcCCCcEEECCCCcHHHHHHHHHH
Confidence 00 000 0 1245688999999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||+|+ |+++|+||..||++
T Consensus 88 ~~~~~~~Vv~~---~~~~Gvit~~di~~ 112 (113)
T cd04623 88 RRFRHLPVVDG---GKLVGIVSIGDVVK 112 (113)
T ss_pred cCCCEeEEEeC---CEEEEEEEHHHhhc
Confidence 99999999997 79999999999976
No 43
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=3e-11 Score=101.61 Aligned_cols=98 Identities=19% Similarity=0.275 Sum_probs=81.3
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
++++++++++++.+|++.|.+++++.+||+|.. .++++|+++..|+++++..... .....++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~------------~~~~~G~v~~~dl~~~~~~~~~-----~~~~~~v~ 63 (114)
T cd04630 1 PNVVTIDGLATVAEALQLMKEHGVSSLVVEKRR------------ESDAYGIVTMRDILKKVVAEGR-----DPDRVNVY 63 (114)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCEEEEEECC------------CCcEEEEEehHHHHHHHHhCCC-----CCCccCHH
Confidence 467899999999999999999999999999852 1699999999999987654211 11236789
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
++|..+ ++++.+++++.+|++.|. .+.+.+||.++
T Consensus 64 ~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~ 99 (114)
T cd04630 64 EIMTKP---LISVSPDMDIKYCARLMERTNIRRAPVVEN 99 (114)
T ss_pred HHhcCC---CeeECCCCCHHHHHHHHHHcCCCEeeEeeC
Confidence 999754 999999999999999999 68999999764
No 44
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.30 E-value=1.8e-11 Score=129.53 Aligned_cols=114 Identities=14% Similarity=0.134 Sum_probs=96.9
Q ss_pred CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939 218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV 296 (433)
Q Consensus 218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~ 296 (433)
+|.++++++.+++++.+|+++|.+ +++.++|+| ++ +++|+||.+||......
T Consensus 93 im~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD---~g--klvGIVT~rDL~~~~~~---------------------- 145 (475)
T TIGR01303 93 LVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL---ED--RPVGLVTDSDLLGVDRF---------------------- 145 (475)
T ss_pred ccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE---CC--EEEEEEEHHHhhcCCCC----------------------
Confidence 577889999999999999999998 888888888 47 99999999998543200
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHH
Q 013939 297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMA 376 (433)
Q Consensus 297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~ 376 (433)
. .+ + ..|+.+++++.+++++.+++.
T Consensus 146 ----------------~-----------------~V------~----------------dIMt~~litv~~~~sL~eAl~ 170 (475)
T TIGR01303 146 ----------------T-----------------QV------R----------------DIMSTDLVTAPADTEPRKAFD 170 (475)
T ss_pred ----------------C-----------------CH------H----------------HHccCCceEeCCCCcHHHHHH
Confidence 0 00 0 225779999999999999999
Q ss_pred HHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 377 QMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 377 ~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
+|.+++++++||||++ |+++|+||.+||++....+|.
T Consensus 171 lM~~~~i~~LPVVD~~--g~LvGIIT~~DLl~~~~~~~~ 207 (475)
T TIGR01303 171 LLEHAPRDVAPLVDAD--GTLAGILTRTGALRATIYTPA 207 (475)
T ss_pred HHHHcCCCEEEEEcCC--CeEEEEEEHHHHHHHHhCCch
Confidence 9999999999999987 899999999999999988765
No 45
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=3.5e-11 Score=100.06 Aligned_cols=107 Identities=14% Similarity=0.184 Sum_probs=88.6
Q ss_pred CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939 221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
++++++.++.++.+|++.|.+ +.+.+||+|+ +| +++|+++..|++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~--~~~G~v~~~~l~~~~~~------------------------- 52 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE--DG--RLVGIVTSWDISKAVAR------------------------- 52 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC--CC--cEEEEEeHHHHHHHHhh-------------------------
Confidence 567899999999999999988 8899999998 78 99999999999754200
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML 379 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~ 379 (433)
.. . .+ . ..+..++.+|.+++++.+++..|.
T Consensus 53 -------------~~-~--------------~~------~----------------~~~~~~~~~v~~~~~l~~~~~~~~ 82 (110)
T cd04605 53 -------------DK-K--------------SV------E----------------DIMTRNVITATPDEPIDVAARKME 82 (110)
T ss_pred -------------Cc-c--------------CH------H----------------HhcCCCCeEECCCCcHHHHHHHHH
Confidence 00 0 00 0 113557889999999999999999
Q ss_pred HcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 380 SHRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
+++.+++||+|++ |+++|+||+.||++
T Consensus 83 ~~~~~~~~Vv~~~--~~~~G~v~~~di~~ 109 (110)
T cd04605 83 RHNISALPVVDAE--NRVIGIITSEDISK 109 (110)
T ss_pred HhCCCEEeEECCC--CcEEEEEEHHHhhh
Confidence 9999999999987 89999999999975
No 46
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.30 E-value=2.2e-11 Score=102.04 Aligned_cols=111 Identities=18% Similarity=0.290 Sum_probs=90.7
Q ss_pred CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939 218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV 296 (433)
Q Consensus 218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~ 296 (433)
++.+.++++.++.++.+|+..|.+ +++++||++. + +++|+||.+|+++....
T Consensus 4 ~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~---~--~l~Giit~~di~~~~~~---------------------- 56 (117)
T COG0517 4 IMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD---G--KLVGIITERDILRALAA---------------------- 56 (117)
T ss_pred cccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC---C--EEEEEEEHHHHHHHHhc----------------------
Confidence 344789999999999999999999 9999999995 5 89999999999875310
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHH
Q 013939 297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMA 376 (433)
Q Consensus 297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~ 376 (433)
..... ..+ + ..|+.+++++.+++++.+++.
T Consensus 57 ----------------~~~~~------------~~v-----------------~-----~v~~~~~~~~~~~~~~~~~~~ 86 (117)
T COG0517 57 ----------------GGKRL------------LPV-----------------K-----EVMTKPVVTVDPDTPLEEALE 86 (117)
T ss_pred ----------------cCCcc------------ccH-----------------H-----HhccCCcEEECCCCCHHHHHH
Confidence 00000 000 0 225669999999999999999
Q ss_pred HHHH-cCCCEEEEEeCCCCC-eEEEEEeHHHHH
Q 013939 377 QMLS-HRATHVWVTEDESDD-VLVGVVGYADIL 407 (433)
Q Consensus 377 ~m~~-~~vhrl~VVD~~~~~-~lvGIVs~~DIL 407 (433)
.|.+ ++++++||+|++ + +++||||.+||+
T Consensus 87 ~m~~~~~~~~lpVv~~~--~~~lvGivt~~di~ 117 (117)
T COG0517 87 LMVERHKIRRLPVVDDD--GGKLVGIITLSDIL 117 (117)
T ss_pred HHHHHcCcCeEEEEECC--CCeEEEEEEHHHcC
Confidence 9999 799999999997 7 999999999984
No 47
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.30 E-value=7.7e-11 Score=126.84 Aligned_cols=191 Identities=18% Similarity=0.166 Sum_probs=130.5
Q ss_pred CCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccccccccc
Q 013939 93 KTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANA 171 (433)
Q Consensus 93 ~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 171 (433)
..+|+++|.+. ++++++++++.+|+++|. ++++++||+++++
T Consensus 67 ~~~V~dim~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g---------------------------------- 109 (546)
T PRK14869 67 KPQVRDLEIDK---PVTVSPDTSLKEAWNLMDENNVKTLPVVDEEG---------------------------------- 109 (546)
T ss_pred CCcHHHhcCCC---CcEECCCCcHHHHHHHHHHcCCCEEEEEcCCC----------------------------------
Confidence 36899999865 999999999999999999 7899999986532
Q ss_pred CCCCCCCcCCCCCeEEEeeHHHHHHHHHHccC--CCCCC---------------------CCCCccc-----------cc
Q 013939 172 NRPSSSSTTSVRDKFCCLSREDVIRFLIGCLG--ALAPL---------------------PLSSISS-----------LG 217 (433)
Q Consensus 172 ~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~--~l~~l---------------------~~~tV~~-----------L~ 217 (433)
+..|+||..|+.+++.+... .+..+ ..+.... ++
T Consensus 110 ------------~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~ 177 (546)
T PRK14869 110 ------------KLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLE 177 (546)
T ss_pred ------------EEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHH
Confidence 45899999999997754221 01110 0000111 11
Q ss_pred CcCC-CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCC----------CCcceEEeecchhhhhhcchhHHHHHHhhccc
Q 013939 218 VINP-NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTS----------EDQYKIIGEISASKLWKCDYLAAAWALANLSA 285 (433)
Q Consensus 218 im~~-~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~----------~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~ 285 (433)
.+.+ +++++.....+.. .+.+ +++++.|..... +. .+.++.|+.|..... ..+.
T Consensus 178 ~~~~~~lvi~gdr~d~~~---~ai~~~~~~lIlt~g~~~~~~v~~la~~~--~i~ii~t~~dt~~t~-----~~l~---- 243 (546)
T PRK14869 178 RIEEGDIVIVGDREDIQL---AAIEAGVRLLIITGGAPVSEDVLELAKEN--GVTVISTPYDTFTTA-----RLIN---- 243 (546)
T ss_pred hccCCCEEEEcCcHHHHH---HHHHcCCCEEEECCCCCCCHHHHHHHHhC--CCeEEEecccHHHHH-----HHhh----
Confidence 2333 3555554444443 3445 788888876510 11 467777777765432 0000
Q ss_pred hhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCC-CCCeE
Q 013939 286 GQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGR-STPLT 364 (433)
Q Consensus 286 ~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~it 364 (433)
+. ..+ + +.|+ .++++
T Consensus 244 ---------------------------~~---------------~~V-----------------~-----~iM~~~~~~~ 259 (546)
T PRK14869 244 ---------------------------QS---------------IPV-----------------S-----YIMTTEDLVT 259 (546)
T ss_pred ---------------------------cC---------------CCH-----------------H-----HhccCCCcEE
Confidence 00 000 0 2356 78999
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 365 CKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 365 ~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
+++++++.++..+|.+++++++||||++ |+++|+||+.|+++...+
T Consensus 260 ~~~~~~~~~~~~~m~~~~~~~~PVvd~~--g~lvGiit~~dl~~~~~~ 305 (546)
T PRK14869 260 FSKDDYLEDVKEVMLKSRYRSYPVVDED--GKVVGVISRYHLLSPVRK 305 (546)
T ss_pred ECCCCcHHHHHHHHHhcCCCceEEEcCC--CCEEEEEEHHHhhccccC
Confidence 9999999999999999999999999987 999999999999996654
No 48
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.29 E-value=1.6e-11 Score=107.78 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=90.1
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.+++++.+|++.|.+ +++++||+|+ +| +++|++|..||+++...... ..++-..|.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~--~~--~~~Giv~~~dl~~~~~~~~~---~~~~~~~~~----------- 63 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD--NG--KPVGVITYRDLAFAEFEDNE---RGLPKKSIK----------- 63 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECC--CC--CEEEEEeHHHHHHHhhcccc---cccchhhhh-----------
Confidence 47889999999999999998 8999999997 78 99999999999875310000 000000000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
|.+ .. ..... +..+.....+ . ..+..++.++.+++++.+++..|.+
T Consensus 64 ~~~--~~--~~~~~--------~~~~~~~~~v-----------------~-----~~~~~~~~~v~~~~~l~~~~~~~~~ 109 (135)
T cd04621 64 MKR--KA--GQKRY--------RYVKEVPLVA-----------------E-----DIMTEEIITVSPNDDVVDAAKLMLE 109 (135)
T ss_pred hhh--hc--ccccc--------cccccccccH-----------------H-----HhcCCCCeEECCCCCHHHHHHHHHH
Confidence 000 00 00000 0000000000 0 2356788899999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||+|+ |+++|+||.+||++
T Consensus 110 ~~~~~l~Vv~~---~~~~Gvit~~di~~ 134 (135)
T cd04621 110 ANISGLPVVDN---DNIVGVITKTDICR 134 (135)
T ss_pred cCCCEEEEEeC---CEEEEEEEHHHHhh
Confidence 99999999997 79999999999986
No 49
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=1.7e-11 Score=102.37 Aligned_cols=112 Identities=20% Similarity=0.193 Sum_probs=87.8
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.++.++.+|++.|.+ +.+.+||+++ +| +++|+++..|+.+..... .+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~--~~~G~v~~~~l~~~~~~~-----------~~~~---------- 56 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD--NG--NLVGFLSEQDCLKQLLES-----------SYHC---------- 56 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECC--CC--eEEEEeehHHHHHHhhhh-----------hhcc----------
Confidence 57789999999999999988 7889999998 78 999999999997642100 0000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
.. . ..+ . ..+..++.++.+++++.+++.+|.+
T Consensus 57 ------------~~--~------------~~v------~----------------~~~~~~~~~v~~~~~l~~~~~~~~~ 88 (114)
T cd04629 57 ------------DG--V------------ATV------R----------------DIMTTEVLTVSPDDSIVDLAQLMLK 88 (114)
T ss_pred ------------CC--C------------ccH------H----------------HHhccCceEECCCCcHHHHHHHHHH
Confidence 00 0 000 0 1145578899999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILVA 409 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~~ 409 (433)
++.+++||+|+ |+++|+||..||+++
T Consensus 89 ~~~~~~~Vv~~---~~~~Gvit~~di~~~ 114 (114)
T cd04629 89 AKPKRYPVVDD---GKLVGQISRRDVLRA 114 (114)
T ss_pred hCCCccCEEEC---CEEEEEEEHHHHhcC
Confidence 99999999997 799999999999863
No 50
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=2e-11 Score=102.28 Aligned_cols=108 Identities=16% Similarity=0.276 Sum_probs=86.7
Q ss_pred eEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCC
Q 013939 223 YSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSF 301 (433)
Q Consensus 223 vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~ 301 (433)
.+++.+++++.+|++.|.+ +...++|+|+ +| +++|+++.+|+.+.... . . .+
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~--~~~G~v~~~dl~~~~~~-------~------------~-~~--- 56 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDE--NG--RLLGTVTDGDIRRALLK-------G------------L-SL--- 56 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECC--CC--CEEEEEEcHHHHHHHhc-------C------------C-Cc---
Confidence 5688999999999999988 8889999997 78 99999999998753200 0 0 00
Q ss_pred CCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHc
Q 013939 302 PDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSH 381 (433)
Q Consensus 302 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~ 381 (433)
. . .+ . ..+..++.++.+++++.+++++|.++
T Consensus 57 ------------~--~-------------~v------~----------------~~~~~~~~~v~~~~~l~~~~~~~~~~ 87 (113)
T cd04607 57 ------------D--D-------------PV------S----------------EVMNRNPITAKVGSSREEILALMRER 87 (113)
T ss_pred ------------C--C-------------CH------H----------------HhhcCCCEEEcCCCCHHHHHHHHHHC
Confidence 0 0 00 0 11456788999999999999999999
Q ss_pred CCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 382 RATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 382 ~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
+.+++||||++ |+++|+||.+||+.
T Consensus 88 ~~~~~~Vv~~~--~~~~Gvit~~di~~ 112 (113)
T cd04607 88 SIRHLPILDEE--GRVVGLATLDDLLS 112 (113)
T ss_pred CCCEEEEECCC--CCEEEEEEhHHhcc
Confidence 99999999987 89999999999974
No 51
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=1.8e-11 Score=103.61 Aligned_cols=119 Identities=13% Similarity=0.177 Sum_probs=89.7
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.+++++.+|+++|.+ +++.+||+++ +| +++|++|.+|++.+... . +.... .+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~--~~~G~v~~~~l~~~~~~-------~-----~~~~~--~~~~~- 62 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE--DG--KLVGLLTQRDLLRAALS-------S-----LSDNG--EESLT- 62 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECC--CC--CEEEEEEHHHHHHHhcc-------c-----ccccc--ccccc-
Confidence 57889999999999999998 8999999997 78 99999999999865300 0 00000 00000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
.. ....+ . ..+..++++|.+++++.+++..|.+
T Consensus 63 ------------~~-------------~~~~v--~--------------------~~~~~~~~~v~~~~~~~~~~~~~~~ 95 (122)
T cd04803 63 ------------KE-------------RDVPV--A--------------------EVMKTDVLTVTPDTPLREAAEIMVE 95 (122)
T ss_pred ------------cc-------------cCcCH--H--------------------HhhCCCCeEeCCCCcHHHHHHHHHH
Confidence 00 00000 0 1246688999999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||+|++ |+++|+||..||++
T Consensus 96 ~~~~~~~Vv~~~--~~~~Gvit~~dl~~ 121 (122)
T cd04803 96 NKIGCLPVVDDK--GTLVGIITRSDFLR 121 (122)
T ss_pred cCCCeEEEEcCC--CCEEEEEEHHHhhc
Confidence 999999999997 89999999999985
No 52
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=2e-11 Score=106.05 Aligned_cols=127 Identities=24% Similarity=0.277 Sum_probs=90.5
Q ss_pred CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHH---HHHHhhc--cchhh-hhccc
Q 013939 221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAA---AWALANL--SAGQF-VMGVE 293 (433)
Q Consensus 221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~---~~~~~~l--~~~~f-~~~~~ 293 (433)
++++++.+++++.+|++.|.+ ++..+||+|+ +| +++|+|+..|+........ ...+..+ ....+ ..+.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~--~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 76 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD--DG--RLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFV- 76 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC--CC--CEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHH-
Confidence 568899999999999999998 8899999997 78 9999999999986431100 0000000 00000 0000
Q ss_pred cCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHH
Q 013939 294 DNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAA 373 (433)
Q Consensus 294 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~ 373 (433)
.... ..+ . ..+..+++++.+++++.+
T Consensus 77 -----------------~~~~---------------~~v------~----------------~~~~~~~~~v~~~~~~~~ 102 (135)
T cd04586 77 -----------------RSHG---------------RKV------A----------------DVMTRPVVTVGEDTPLAE 102 (135)
T ss_pred -----------------HhcC---------------CCH------H----------------HHhCCCceEeCCCCcHHH
Confidence 0000 000 0 124667899999999999
Q ss_pred HHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939 374 VMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVA 409 (433)
Q Consensus 374 v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~ 409 (433)
++..|.+++.+++||+| + |+++||||+.||+++
T Consensus 103 ~~~~~~~~~~~~l~Vvd-~--g~~~Gvit~~di~~~ 135 (135)
T cd04586 103 VAELMEEHRIKRVPVVR-G--GRLVGIVSRADLLRA 135 (135)
T ss_pred HHHHHHHcCCCccCEec-C--CEEEEEEEhHhhhcC
Confidence 99999999999999999 6 899999999999863
No 53
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.28 E-value=2.6e-11 Score=129.31 Aligned_cols=117 Identities=12% Similarity=0.031 Sum_probs=95.8
Q ss_pred cCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCC-CCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939 219 INPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTS-EDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV 296 (433)
Q Consensus 219 m~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~-~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~ 296 (433)
|.++++++.+++++.+|+++|.+ +++++||+|+.. +| +++|+||.+|++... ....++.
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G--klvGIVT~~DL~~v~-------~~~~~V~---------- 166 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS--KLLGYVTKRDWDFVN-------DRETKLS---------- 166 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC--eEEEEEEHHHHhhcc-------ccCCcHH----------
Confidence 66889999999999999999998 999999998610 16 999999999996431 0000000
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCC--CeEecCCCCHHHH
Q 013939 297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRST--PLTCKITSSLAAV 374 (433)
Q Consensus 297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~it~~p~~sL~~v 374 (433)
+.|+.+ ++++.+++++.++
T Consensus 167 -----------------------------------------------------------eIMt~~~~lvtv~~~~sL~eA 187 (505)
T PLN02274 167 -----------------------------------------------------------EVMTSDDDLVTAPAGIDLEEA 187 (505)
T ss_pred -----------------------------------------------------------HHhccCCCcEEECCCCCHHHH
Confidence 113433 8899999999999
Q ss_pred HHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 375 MAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 375 ~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
+++|.+++++++||||++ ++++||||+.||++.+..+.+
T Consensus 188 l~~m~~~~~~~LPVVD~~--g~LvGvITr~DIlk~~~~p~~ 226 (505)
T PLN02274 188 EAVLKDSKKGKLPLVNED--GELVDLVTRTDVKRVKGYPKL 226 (505)
T ss_pred HHHHHHcCCCEEEEEcCC--CeEEEEEEHHHHHHHhhCcCc
Confidence 999999999999999987 899999999999999987544
No 54
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=2.2e-11 Score=103.08 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=90.2
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.+++++.+|++.|.+ +.+.+||+|+ +| +++|+++..|++.+... .. +.. + ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~--~~~G~v~~~~l~~~~~~-------~~----~~~--~---~~-- 59 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK--AG--ELIGIITRRDIIRAGSV-------RT----SVE--D---QQ-- 59 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECC--CC--cEEEEEEcHHHHhhccc-------cc----ccc--c---hh--
Confidence 57899999999999999988 8999999997 78 99999999999864200 00 000 0 00
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
..+.. .. ..+ . ..+..++++|.+++++.+++..|.+
T Consensus 60 ---------~~~~~-~~------------~~~-----------------~-----~~~~~~~~~v~~~~~l~~~~~~~~~ 95 (122)
T cd04635 60 ---------RTQTK-AS------------PTV-----------------E-----KIMSTPVYSVTPDDSIATAVELMLE 95 (122)
T ss_pred ---------hhhhh-cc------------CcH-----------------H-----HHhcCCCeeECCCCCHHHHHHHHHH
Confidence 00000 00 000 0 2246688999999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILVA 409 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~~ 409 (433)
++.+++||+|++ |+++|+||..||+++
T Consensus 96 ~~~~~~~Vvd~~--g~~~Gvit~~dl~~~ 122 (122)
T cd04635 96 HDIGRLPVVNEK--DQLVGIVDRHDVLKA 122 (122)
T ss_pred cCCCeeeEEcCC--CcEEEEEEhHHhhcC
Confidence 999999999987 999999999999863
No 55
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=3.8e-11 Score=100.59 Aligned_cols=99 Identities=21% Similarity=0.285 Sum_probs=78.7
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
+++++++++++.+|++.|.++++..+||+|.. ++++|+++..|+++++...... +.....+.++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------~~~~Giv~~~dl~~~~~~~~~~-~~~~~~~~~v~~ 67 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-------------GKYVGTISLTDILWKLKGLENL-DLERLVDLKVID 67 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-------------CcEEEEEeHHHHHHHhhccCch-hHHHHhCCcHHH
Confidence 57899999999999999999999999999863 7999999999999987542111 011112578999
Q ss_pred ccccCCCccEEeCCCCcHHHHHHHHHcCCCeEEeeec
Q 013939 99 VIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKS 135 (433)
Q Consensus 99 Im~~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~~~ 135 (433)
+|... ++++.+++++.+|++.|.+ .+.+||.++
T Consensus 68 ~~~~~---~~~v~~~~~l~~a~~~~~~-~~~~~Vv~~ 100 (116)
T cd04643 68 VMNTD---VPVIIDDADIEEILHLLID-QPFLPVVDD 100 (116)
T ss_pred HhcCC---CceecCCCCHHHHHHHHhc-CCceeEEeC
Confidence 99865 8999999999999999984 235777643
No 56
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.28 E-value=4.4e-11 Score=120.01 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=90.7
Q ss_pred chhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcc
Q 013939 7 YHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLE 86 (433)
Q Consensus 7 ~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~ 86 (433)
..+|+|+|..+++++++++++++.+|++.|.+++...+||+|.+ ++++|+|+..|+.+++....
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~-------------g~~iG~vt~~dl~~~~~~~~--- 259 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ-------------QQVQGVFTDGDLRRWLVGGG--- 259 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC-------------CcEEEEecHHHHHHHHhCCC---
Confidence 46799999754458999999999999999999999999999963 79999999999988764321
Q ss_pred hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 87 DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 87 ~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
..+.+|.++|... ++++.+++++.+|++.|. +++.++||+++
T Consensus 260 ----~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 302 (321)
T PRK11543 260 ----ALTTPVNEAMTRG---GTTLQAQSRAIDAKEILMKRKITAAPVVDE 302 (321)
T ss_pred ----CcCCcHHHhcCCC---CEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 1246799999865 889999999999999999 89999999864
No 57
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.28 E-value=4.2e-11 Score=99.02 Aligned_cols=106 Identities=19% Similarity=0.197 Sum_probs=88.1
Q ss_pred CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939 221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
+++.++.++.++.+|++.|.+ ++..+||+|+ +| +++|+++..|++..... ..+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~--~~~G~v~~~dl~~~~~~-------~~~--------------- 55 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDK--DN--KLLGIVSLESLEQAYKE-------AKS--------------- 55 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcC--CC--cEEEEEEHHHHHHHhhc-------CCc---------------
Confidence 357789999999999999998 8999999997 78 99999999999754200 000
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML 379 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~ 379 (433)
+ + ..+...+.++.+++++.++++.|.
T Consensus 56 --------------------------------v------~----------------~~~~~~~~~v~~~~~~~~~~~~~~ 81 (109)
T cd04583 56 --------------------------------L------E----------------DIMLEDVFTVQPDASLRDVLGLVL 81 (109)
T ss_pred --------------------------------H------h----------------HhhcCCceEECCCCcHHHHHHHHH
Confidence 0 0 113557789999999999999999
Q ss_pred HcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 380 SHRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
+++.+++||+|++ |+++|+||.+|+++
T Consensus 82 ~~~~~~~~vv~~~--g~~~Gvit~~~l~~ 108 (109)
T cd04583 82 KRGPKYVPVVDED--GKLVGLITRSSLVD 108 (109)
T ss_pred HcCCceeeEECCC--CeEEEEEehHHhhc
Confidence 9999999999987 89999999999975
No 58
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=2.2e-11 Score=102.28 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=84.3
Q ss_pred CeEEEcCCCcHHHHHHhccc-C-CCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-D-PSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~-isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
+++++.++.++.+|++.|.+ + ...++|++ +| +++|+++..|++.+... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~--~~~G~v~~~dl~~~~~~-------~----------------- 52 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE---KG--RLLGIFTERDIVRLTAI-------G----------------- 52 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC---CC--cEEEEEeHHHHHHHHhc-------C-----------------
Confidence 46789999999999999987 6 55677666 47 99999999999764200 0
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCC--CCHHHHHHH
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKIT--SSLAAVMAQ 377 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~--~sL~~v~~~ 377 (433)
..... ..+ . ..+..+++++.++ +++.+++++
T Consensus 53 -------------~~~~~------------~~i------~----------------~~~~~~~~~v~~~~~~~l~~a~~~ 85 (115)
T cd04620 53 -------------KDLSD------------LPI------G----------------EVMTQPVVTLQESEIQDIFTALSL 85 (115)
T ss_pred -------------CCccc------------cCH------H----------------HhcCCCcEEEecccccCHHHHHHH
Confidence 00000 000 0 1145678889887 789999999
Q ss_pred HHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939 378 MLSHRATHVWVTEDESDDVLVGVVGYADILVA 409 (433)
Q Consensus 378 m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~ 409 (433)
|.+++.+++||+|++ |+++||||..||+++
T Consensus 86 ~~~~~~~~~pVvd~~--~~~~Gvit~~dl~~~ 115 (115)
T cd04620 86 FRQHQIRHLPVLDDQ--GQLIGLVTAESIRQV 115 (115)
T ss_pred HHHhCCceEEEEcCC--CCEEEEEEhHHhhcC
Confidence 999999999999987 999999999999873
No 59
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=3.3e-11 Score=100.49 Aligned_cols=108 Identities=18% Similarity=0.241 Sum_probs=87.6
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
++.++.++.++.+|++.|.+ +++.+||+|+ +| +++|+++..|+..+... . . +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~--~~~G~v~~~dl~~~~~~-------~-----~---------~-- 54 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN--EE--KLKGVVTFTDILDLDLF-------E-----S---------F-- 54 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC--CC--CEEEEEehHHhHHHHhh-------c-----c---------c--
Confidence 47789999999999999988 8999999997 78 99999999999764200 0 0 0
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
.. . .+ + ..+..++.++.+++++.+++..|.+
T Consensus 55 -~~---------~-----------------~v------~----------------~~~~~~~~~v~~~~~l~~~~~~~~~ 85 (111)
T cd04626 55 -LE---------K-----------------KV------F----------------NIVSQDVFYVNEEDTIDEALDIMRE 85 (111)
T ss_pred -cc---------C-----------------cH------H----------------HHhcCCcEEEcCCCcHHHHHHHHHH
Confidence 00 0 00 0 1246688899999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||+|+ |+++|+||+.||+.
T Consensus 86 ~~~~~~~Vv~~---~~~~G~it~~di~~ 110 (111)
T cd04626 86 KQIGRLPVVDD---NKLIGVVRTKDILD 110 (111)
T ss_pred cCCCeeeEeEC---CEEEEEEEhHHhcc
Confidence 99999999997 79999999999974
No 60
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=5.8e-11 Score=98.64 Aligned_cols=96 Identities=28% Similarity=0.389 Sum_probs=80.3
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
++++++++.++.+|++.|.++++..+||+|.+ ++++|+++..|+++++..... .....++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------~~~~Giv~~~~l~~~~~~~~~-----~~~~~~~~~ 63 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-------------GRLVGIFSERDIVRKVALRGA-----SALDTPVSE 63 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-------------CCEEEEEehHHHHHHHhhcCC-----CccccCHHH
Confidence 56889999999999999999999999999863 799999999999987754211 011357889
Q ss_pred ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
+|... ++.+.+++++.++++.|. .+.+++||.++
T Consensus 64 ~~~~~---~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~ 98 (113)
T cd04623 64 IMTRN---VITVTPDDTVDEAMALMTERRFRHLPVVDG 98 (113)
T ss_pred hcCCC---cEEECCCCcHHHHHHHHHHcCCCEeEEEeC
Confidence 99754 899999999999999999 78889998764
No 61
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=4.2e-11 Score=102.93 Aligned_cols=117 Identities=17% Similarity=0.174 Sum_probs=83.7
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.+++++.+|++.|.+ +...++|+|+ +| +++|+++..|++..... .+... .+. .+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~--~~~Giv~~~dl~~~~~~---~~~~~-------~~~----~~-- 61 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS--DD--NFIGVITAVDLLGEEPI---KRIQE-------GGI----SR-- 61 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC--CC--cEEEEEEHHHHhhChhh---HHHHH-------cCC----Cc--
Confidence 47899999999999999988 8889999997 78 99999999999863200 00000 000 00
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeE--e----cCCCCHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLT--C----KITSSLAAV 374 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it--~----~p~~sL~~v 374 (433)
.. ..+ . ..|..+.++ . .+++++.++
T Consensus 62 ------------~~---------------~~v------~----------------~im~~~~~~~~~~~~~~~~~~l~~~ 92 (126)
T cd04640 62 ------------SE---------------LTV------A----------------DVMTPKEDLKALDLEELENASVGDV 92 (126)
T ss_pred ------------hh---------------eEH------H----------------HhcCchhhhccccHHHhccCcHHHH
Confidence 00 000 0 113333332 3 368999999
Q ss_pred HHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 375 MAQMLSHRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 375 ~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
+.+|.+++.+++||+|++ .|+++|+||++||++
T Consensus 93 l~~m~~~~~~~lpVvd~~-~~~~~G~it~~di~~ 125 (126)
T cd04640 93 VETLKASGRQHALVVDRE-HHQIRGIISTSDIAR 125 (126)
T ss_pred HHHHHHCCCceEEEEECC-CCEEEEEEeHHHHhh
Confidence 999999999999999984 269999999999986
No 62
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=6.4e-11 Score=101.59 Aligned_cols=100 Identities=21% Similarity=0.384 Sum_probs=80.1
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC---Ccch----HHhh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD---CLED----QDKA 91 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~---~l~~----~~~~ 91 (433)
+++.+++++++.+|++.|.+++++.+||+|.+ ++++|+++..|+..++.... .... ....
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-------------~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~ 68 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-------------GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERM 68 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-------------CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhh
Confidence 56789999999999999999999999999964 79999999999998654310 0000 1123
Q ss_pred cCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeee
Q 013939 92 MKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPK 134 (433)
Q Consensus 92 l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~ 134 (433)
...++.++|..+ ++++.+++++.++++.|. ++.+.+||..
T Consensus 69 ~~~~~~~~~~~~---~~~v~~~~~l~~~l~~~~~~~~~~~~V~~ 109 (128)
T cd04632 69 LDLPVYDAMSSP---VITASPNDSVRDAVDRMLENDDSSVVVVT 109 (128)
T ss_pred ccCcHHHHhcCC---CceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence 456899999754 999999999999999999 6788888864
No 63
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=7.8e-11 Score=101.94 Aligned_cols=101 Identities=21% Similarity=0.363 Sum_probs=80.9
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcc------------
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLE------------ 86 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~------------ 86 (433)
+++++++++++.+|++.|.+++..++||+|.+ ++++|+++..|+++++.......
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-------------~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-------------GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLD 68 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-------------CCEEEEEeHHHHHHHHhccCCcccccccccccccc
Confidence 46889999999999999999999999999863 79999999999998875421110
Q ss_pred -hH-HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 87 -DQ-DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 87 -~~-~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
+. ......++.++|... ++.+.+++++.++++.|. .+.+++||.++
T Consensus 69 ~~~~~~~~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~ 117 (132)
T cd04636 69 ESKIKKLLGKKVEEIMTKK---VITVDEDTTIEDVARIMSKKNIKRLPVVDD 117 (132)
T ss_pred hHHHHHHcCCCHHHhccCC---ceEECCCCcHHHHHHHHHHCCCCeeEEEEC
Confidence 00 111124889999754 889999999999999998 78899999764
No 64
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.26 E-value=3.4e-11 Score=100.41 Aligned_cols=103 Identities=16% Similarity=0.155 Sum_probs=83.6
Q ss_pred EEcCCCcHHHHHHhccc-C-----CCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCC
Q 013939 225 SIEASVPAIEATLKAPG-D-----PSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTP 298 (433)
Q Consensus 225 tv~~~~~v~ea~~~M~~-~-----isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~ 298 (433)
++.+++++.++++.|.+ . ...+||+|+ +| +++|+++.+|+.+.. . ..++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~--~~--~~~G~v~~~~l~~~~-~-------~~~v~------------ 56 (109)
T cd04606 1 AVREDWTVGEALEYLRRNADDPETIYYIYVVDE--EG--RLLGVVSLRDLLLAD-P-------DTPVS------------ 56 (109)
T ss_pred CccccCcHHHHHHHHHhccCcccceeEEEEECC--CC--CEEEEEEHHHHhcCC-C-------cchHH------------
Confidence 36789999999999987 5 368999997 78 999999999986421 0 00000
Q ss_pred CCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHH
Q 013939 299 RSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQM 378 (433)
Q Consensus 299 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m 378 (433)
..+..++.++.+++++.++++.|
T Consensus 57 ---------------------------------------------------------~~~~~~~~~i~~~~~~~~~~~~~ 79 (109)
T cd04606 57 ---------------------------------------------------------DIMDTDVISVSADDDQEEVARLF 79 (109)
T ss_pred ---------------------------------------------------------HHhCCCCeEEcCCCCHHHHHHHH
Confidence 11355789999999999999999
Q ss_pred HHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHH
Q 013939 379 LSHRATHVWVTEDESDDVLVGVVGYADILVAV 410 (433)
Q Consensus 379 ~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i 410 (433)
.+++.+++||+|++ ++++|+||..||++++
T Consensus 80 ~~~~~~~~~Vv~~~--~~~~Gvit~~dll~~~ 109 (109)
T cd04606 80 EKYDLLALPVVDEE--GRLVGIITVDDVIDVI 109 (109)
T ss_pred HHcCCceeeeECCC--CcEEEEEEhHHhhhhC
Confidence 99999999999987 8999999999999763
No 65
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.25 E-value=2.6e-11 Score=129.14 Aligned_cols=109 Identities=13% Similarity=0.070 Sum_probs=88.7
Q ss_pred eEEEcCCCcHHHHHHhccc-CCCeeEEecCC-CCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 223 YSSIEASVPAIEATLKAPG-DPSAIAVLEPT-SEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 223 vitv~~~~~v~ea~~~M~~-~isavpVVd~~-~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
.+++.+++++.+|+++|.+ +++.+||||++ ++| +++|+||.+|++... . ....++.
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g--kLvGIVT~~DLr~~~-~-----~~~~~V~-------------- 164 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG--KLLGIVTSRDYRISR-M-----SLDTKVK-------------- 164 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC--EEEEEEEcHHhhccc-c-----CCCCCHH--------------
Confidence 4699999999999999999 89999999951 136 999999999996421 0 0000000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCC--CCCeEecCCCCHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGR--STPLTCKITSSLAAVMAQM 378 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~it~~p~~sL~~v~~~m 378 (433)
..|+ .+++++++++++.+|+++|
T Consensus 165 -------------------------------------------------------dIMt~~~~~itv~~d~~l~eAl~lM 189 (502)
T PRK07107 165 -------------------------------------------------------DFMTPFEKLVTANEGTTLKEANDII 189 (502)
T ss_pred -------------------------------------------------------HHhCCCCCeEEECCCCcHHHHHHHH
Confidence 1134 3789999999999999999
Q ss_pred HHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHH
Q 013939 379 LSHRATHVWVTEDESDDVLVGVVGYADILVAV 410 (433)
Q Consensus 379 ~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i 410 (433)
.++++++|||||++ ++|+|+||+.||++..
T Consensus 190 ~e~~i~~LPVVD~~--g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 190 WDHKLNTLPIVDKN--GNLVYLVFRKDYDSHK 219 (502)
T ss_pred HHcCCCEEEEEcCC--CeEEEEEEhHHHHhcc
Confidence 99999999999987 8999999999999976
No 66
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.25 E-value=9.9e-11 Score=98.41 Aligned_cols=97 Identities=26% Similarity=0.333 Sum_probs=80.7
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
+++.++++++++.+|++.|.++++..+||+|.. ++++|+++..|+.+.+.+... .-..++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------~~~~G~v~~~dl~~~~~~~~~------~~~~~~~ 61 (115)
T cd04593 1 PPPPVLSATTPLREAAEQLIESKHGSALVVDRD-------------GGVVGIITLPDLLRALEADEA------GEPSAVD 61 (115)
T ss_pred CCCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-------------CCEEEEEEHHHHHHHHhcccc------cccccHH
Confidence 356789999999999999999999999999863 799999999999987654211 1124588
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV 136 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~ 136 (433)
++|..+ ++++.+++++.+|++.|. ++.+++||.+++
T Consensus 62 ~~~~~~---~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~ 98 (115)
T cd04593 62 EVATPP---LLTVHPDEPLAHALDRMASRGLRQLPVVDRG 98 (115)
T ss_pred HhccCC---ceEECCCCCHHHHHHHHHHcCCceeeEEeCC
Confidence 888755 899999999999999999 789999998653
No 67
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.25 E-value=2.6e-11 Score=131.29 Aligned_cols=127 Identities=13% Similarity=0.165 Sum_probs=100.6
Q ss_pred CCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchh
Q 013939 209 PLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQ 287 (433)
Q Consensus 209 ~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~ 287 (433)
...++++ +|++++.++++++++.|+++.|.+ +...+||+|+ +| +++|+||.+|+++....
T Consensus 445 ~~~~V~d--im~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~--~g--~lvGiVt~~dL~~~l~~------------- 505 (574)
T PRK01862 445 RTTQMRE--LIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD--DG--RFRGAVALKDITSDLLD------------- 505 (574)
T ss_pred hhCcHHH--HhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC--CC--eEEEEEEHHHHHHHhhc-------------
Confidence 3445665 688899999999999999999998 8999999998 78 99999999999763200
Q ss_pred hhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecC
Q 013939 288 FVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKI 367 (433)
Q Consensus 288 f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p 367 (433)
. +..+. ..+ + +.+..++.++++
T Consensus 506 ------~------------------~~~~~------------~~v------~----------------dim~~~~~~v~~ 527 (574)
T PRK01862 506 ------K------------------RDTTD------------KTA------A----------------DYAHTPFPLLTP 527 (574)
T ss_pred ------c------------------ccccc------------chH------H----------------HhccCCCeeECC
Confidence 0 00000 000 0 225778899999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 368 TSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 368 ~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
++++.+++++|.+++.+++||||+++.++++|+||++||++++.+
T Consensus 528 d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 528 DMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred CCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 999999999999999999999998622489999999999999864
No 68
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.25 E-value=3.6e-11 Score=100.25 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=88.3
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
++.++.+++++.++++.|.+ +.+.+||+|+ +| +++|+++..|++.+.... + .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~--~~--~~~G~v~~~~i~~~~~~~------------~-~~--------- 56 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE--DG--RLVGIFTDGDLRRALEKG------------L-DI--------- 56 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcC--CC--CEEEEechHHHHHHHhcc------------C-cc---------
Confidence 46788999999999999988 7899999998 78 999999999998653100 0 00
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
.. ..+ + ..+..++.+|.+++++.+++++|.+
T Consensus 57 ------------~~---------------~~v-----------------~-----~~~~~~~~~v~~~~~~~~~~~~~~~ 87 (114)
T cd04604 57 ------------LT---------------LPV-----------------A-----DVMTRNPKTIDPDALAAEALELMEE 87 (114)
T ss_pred ------------cc---------------CCH-----------------H-----HhhccCCeEECCCCcHHHHHHHHHH
Confidence 00 000 0 2245677899999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||+|++ ++++|+||..||++
T Consensus 88 ~~~~~~~Vv~~~--~~~iG~it~~di~~ 113 (114)
T cd04604 88 NKITALPVVDDN--GRPVGVLHIHDLLR 113 (114)
T ss_pred cCCCEEEEECCC--CCEEEEEEHHHhhc
Confidence 999999999987 89999999999986
No 69
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.25 E-value=5.4e-11 Score=98.53 Aligned_cols=106 Identities=17% Similarity=0.205 Sum_probs=85.0
Q ss_pred CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939 221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
++++++.+++++.++++.|.+ +.+++||+|+ +| +++|++|.+|+++.. . ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~--~~~G~v~~~~l~~~~-~------~~~---------------- 54 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDD--DG--KLVGIVTNRDLRFET-D------LDK---------------- 54 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcC--CC--EEEEEEEhhHeeecc-c------CCC----------------
Confidence 357889999999999999988 8999999997 78 999999999986431 0 000
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecC-CCCHHHHHHHH
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKI-TSSLAAVMAQM 378 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p-~~sL~~v~~~m 378 (433)
.+ . ..+...+.++.+ ++++.+++.+|
T Consensus 55 -------------------------------~v------~----------------~~~~~~~~~~~~~~~~l~~~~~~~ 81 (110)
T cd04601 55 -------------------------------PV------S----------------EVMTPENLLTTVEGTSLEEALELL 81 (110)
T ss_pred -------------------------------CH------H----------------HhcccCceEEecCCCCHHHHHHHH
Confidence 00 0 112344556666 99999999999
Q ss_pred HHcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 379 LSHRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 379 ~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
.+++.+++||+|++ |+++|+||.+|+++
T Consensus 82 ~~~~~~~~~Vv~~~--~~~~Gvi~~~dil~ 109 (110)
T cd04601 82 HEHKIEKLPVVDDE--GKLKGLITVKDIEK 109 (110)
T ss_pred HHhCCCeeeEEcCC--CCEEEEEEhhhhhc
Confidence 99999999999987 89999999999985
No 70
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=1.2e-10 Score=98.77 Aligned_cols=102 Identities=16% Similarity=0.258 Sum_probs=81.8
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch---H-HhhcC
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED---Q-DKAMK 93 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~---~-~~~l~ 93 (433)
++++++++++++.+|++.|.++++..+||++.. ++++|+++..|++.++........ . ...-.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~ 68 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-------------RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKP 68 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-------------CCEEEEEEHHHHHhhhcccccchhhhhhhccccc
Confidence 578999999999999999999999999999863 799999999999987653211000 0 00123
Q ss_pred CcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 94 TPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 94 ~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
.++.++|... ++++.+++++.++++.|. ++.+++||+++
T Consensus 69 ~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~ 108 (124)
T cd04600 69 ETVGDIMSPP---VVTVRPDTPIAELVPLLADGGHHHVPVVDE 108 (124)
T ss_pred ccHHHhccCC---CeeeCCCCcHHHHHHHHHhcCCCceeEEcC
Confidence 5788999754 899999999999999999 78999999764
No 71
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=1.4e-10 Score=97.16 Aligned_cols=93 Identities=20% Similarity=0.261 Sum_probs=79.1
Q ss_pred eEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchhc
Q 013939 20 LAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQV 99 (433)
Q Consensus 20 lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~I 99 (433)
.+++++++++.+|++.|.++++..+||+|.+ ++++|+++..|++..+.+.. ..+.++.++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------~~~~G~v~~~dl~~~~~~~~-------~~~~~v~~~ 63 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDEN-------------GRLLGTVTDGDIRRALLKGL-------SLDDPVSEV 63 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCC-------------CCEEEEEEcHHHHHHHhcCC-------CcCCCHHHh
Confidence 3789999999999999999999999999863 79999999999987664321 124678899
Q ss_pred cccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 100 IVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 100 m~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
|... +.++.+++++.++++.|. ++.+++||+++
T Consensus 64 ~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 97 (113)
T cd04607 64 MNRN---PITAKVGSSREEILALMRERSIRHLPILDE 97 (113)
T ss_pred hcCC---CEEEcCCCCHHHHHHHHHHCCCCEEEEECC
Confidence 9754 889999999999999999 77999999864
No 72
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.24 E-value=1.3e-10 Score=121.06 Aligned_cols=163 Identities=16% Similarity=0.120 Sum_probs=124.0
Q ss_pred cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939 4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83 (433)
Q Consensus 4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~ 83 (433)
.|...+|+|+|.-..++++++.+++++++++.+.+++.+++||++.. .++++||++..|++.++..+
T Consensus 187 ~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~------------~d~ivGiv~~kDll~~~~~~- 253 (408)
T TIGR03520 187 SFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET------------IDNITGVLYIKDLLPHLNKK- 253 (408)
T ss_pred ccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC------------CCceEEEEEHHHHHhHhccC-
Confidence 57788999999755689999999999999999999999999999854 36899999999999765321
Q ss_pred CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939 84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS 162 (433)
Q Consensus 84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 162 (433)
+.++.++|.+ ++.+.+++++.++++.|. ++.|..+|+++-
T Consensus 254 ---------~~~l~~~~~~----~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~-------------------------- 294 (408)
T TIGR03520 254 ---------NFDWQSLLRE----PYFVPENKKLDDLLRDFQEKKNHLAIVVDEY-------------------------- 294 (408)
T ss_pred ---------CCCHHHHcCC----CeEeCCCCcHHHHHHHHHhcCceEEEEEcCC--------------------------
Confidence 1346778763 789999999999999999 567777776542
Q ss_pred cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHcc-CCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc
Q 013939 163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCL-GALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPG 241 (433)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~-~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~ 241 (433)
|...||||.+||++.+.+.+ ++... ....+. -.......++...++.+..+.|.-
T Consensus 295 --------------------G~~~GiVT~eDileeivgei~de~d~-~~~~i~---~~~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 295 --------------------GGTSGLVTLEDIIEEIVGDISDEFDD-EDLIYS---KIDDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred --------------------CCEEEEEEHHHHHHHHhCCCCCcCCc-CccceE---EeCCCeEEEEeccCHHHHHHHhCC
Confidence 23589999999999885322 22111 111121 123457888889999999888864
Q ss_pred C
Q 013939 242 D 242 (433)
Q Consensus 242 ~ 242 (433)
.
T Consensus 351 ~ 351 (408)
T TIGR03520 351 E 351 (408)
T ss_pred C
Confidence 3
No 73
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=6.2e-11 Score=101.74 Aligned_cols=115 Identities=19% Similarity=0.200 Sum_probs=89.2
Q ss_pred ccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCCCCCCCcCCCCC
Q 013939 106 LLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTTSVRD 184 (433)
Q Consensus 106 ~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (433)
.++++++++++.+|++.|. +++..+||.+++ ++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~----------------------------------------------~~ 35 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK----------------------------------------------GK 35 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC----------------------------------------------Cc
Confidence 3788999999999999998 678888887543 24
Q ss_pred eEEEeeHHHHHHHHHHccCCCCCCCCC-------Ccc-cccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCC
Q 013939 185 KFCCLSREDVIRFLIGCLGALAPLPLS-------SIS-SLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSED 255 (433)
Q Consensus 185 ~~~iiTq~Dvi~~l~~~~~~l~~l~~~-------tV~-~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g 255 (433)
.+|+||+.|++++..+.... ...... .+. ....+..+++++.+++++.+|+++|.+ +...+||||+ +|
T Consensus 36 ~~Giv~~~dl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~--~~ 112 (126)
T cd04642 36 LIGNISASDLKGLLLSPDDL-LLYRTITFKELSEKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE--EG 112 (126)
T ss_pred EEEEEEHHHhhhhhcCcchh-hcccchhhhhhhhhcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC--CC
Confidence 68999999999977432111 110000 011 123567789999999999999999999 8999999997 78
Q ss_pred cceEEeecchhhhhhc
Q 013939 256 QYKIIGEISASKLWKC 271 (433)
Q Consensus 256 ~~klvGiIS~~DL~~~ 271 (433)
+++|+||..|+..|
T Consensus 113 --~~~Giit~~dil~~ 126 (126)
T cd04642 113 --KPIGVITLTDIISI 126 (126)
T ss_pred --CEEEEEEHHHHhcC
Confidence 99999999999876
No 74
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.23 E-value=6.1e-11 Score=98.65 Aligned_cols=110 Identities=14% Similarity=0.164 Sum_probs=88.7
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.+++++.++++.|.+ +++.+||+|+ +| +++|+|+..||..+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~--~~~G~v~~~~l~~~~~~~------------------------- 52 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD--DG--RLVGIVSLDDIREILFDP------------------------- 52 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECC--CC--CEEEEEEHHHHHHHHhcc-------------------------
Confidence 57889999999999999998 8899999998 77 999999999997642000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
..... ..+ . ..+..++.++.+++++.+++..|..
T Consensus 53 ------------~~~~~------------~~v------~----------------~~~~~~~~~v~~~~~~~~~~~~~~~ 86 (114)
T cd04613 53 ------------SLYDL------------VVA------S----------------DIMTKPPVVVYPEDSLEDALKKFED 86 (114)
T ss_pred ------------ccccc------------EEH------H----------------HhccCCCcEEcCCCCHHHHHHHHhh
Confidence 00000 000 0 1246678999999999999999999
Q ss_pred cCCCEEEEEeC-CCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTED-ESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~-~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||+|+ + ++++|+||..||+.
T Consensus 87 ~~~~~~~Vv~~~~--~~~~Gvvt~~di~~ 113 (114)
T cd04613 87 SDYEQLPVVDDDP--GKLLGILSRSDLLS 113 (114)
T ss_pred CCccEeeEEeCCC--CEEEEEEEhHHhhc
Confidence 99999999998 6 89999999999975
No 75
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=3.4e-11 Score=100.25 Aligned_cols=108 Identities=16% Similarity=0.157 Sum_probs=87.6
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
++.++.+++++.+|++.|.+ +...+||+++ +| +++|+++..|+.++... .
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~--~~--~~~G~v~~~~l~~~~~~-------~------------------ 52 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDG--DG--HLVGLLTRDDLIRALAE-------G------------------ 52 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECC--CC--cEEEEeeHHHHHHHHHh-------c------------------
Confidence 46789999999999999988 7899999997 78 99999999999764200 0
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
.. +. .+ . ..+..++.++.+++++.+++..|.+
T Consensus 53 ------------~~-~~-------------~v--~--------------------~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (111)
T cd04639 53 ------------GP-DA-------------PV--R--------------------GVMRRDFPTVSPSATLDAVLRLMQQ 84 (111)
T ss_pred ------------CC-CC-------------cH--H--------------------HHhcCCCcEECCCCcHHHHHHHHHh
Confidence 00 00 00 0 1135678899999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||+|++ |+++|+||..||++
T Consensus 85 ~~~~~~~Vv~~~--~~~~G~it~~dl~~ 110 (111)
T cd04639 85 GGAPAVPVVDGS--GRLVGLVTLENVGE 110 (111)
T ss_pred cCCceeeEEcCC--CCEEEEEEHHHhhc
Confidence 999999999987 89999999999975
No 76
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.23 E-value=1.8e-10 Score=96.07 Aligned_cols=94 Identities=20% Similarity=0.275 Sum_probs=79.0
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
+.+++++++++++|++.|.+++...+||+|. ++++|+++..|++..+.+... ....++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~G~v~~~~l~~~~~~~~~------~~~~~i~~ 61 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG--------------DPRLGIVTRTDLLDAVLLDGL------PSSTPVGE 61 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--------------CeEEEEEEHHHHHHHHHcCCC------CCCCCHHH
Confidence 4678999999999999999999999999984 589999999999987653211 12467889
Q ss_pred ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
+|.+. ++.+.+++++.++++.|. ++.+++||.++
T Consensus 62 ~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04589 62 IATFP---LITVDPDDFLFNALLLMTRHRIHRVVVREG 96 (111)
T ss_pred HhCCC---cEEECCCCcHHHHHHHHHHhCccEEEEeeC
Confidence 99754 899999999999999999 78999999753
No 77
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=1.4e-10 Score=98.60 Aligned_cols=103 Identities=22% Similarity=0.349 Sum_probs=82.3
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch-----HHhhc
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED-----QDKAM 92 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~-----~~~~l 92 (433)
++++++++++++.+|++.|.++++..+||+|.+ .++++|+|+..|++.++.+...... .....
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~------------~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~ 68 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEG------------TGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAI 68 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCcccceeEeCC------------CCEEEEEEEHHHHHHHhhccchhccccccccchhh
Confidence 357889999999999999999999999999863 1799999999999988764311110 01123
Q ss_pred CCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 93 KTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 93 ~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
..++.++|.+. ++++++++++.++++.|. .+.+.++|.++
T Consensus 69 ~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~ 109 (125)
T cd04631 69 NEPVRSIMTRN---VITITPDDSIKDAAELMLEKRVGGLPVVDD 109 (125)
T ss_pred hcCHHHHhcCC---ceEeCCCCcHHHHHHHHHHcCCceEEEEcC
Confidence 46788898754 999999999999999999 78888988754
No 78
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=8.2e-11 Score=98.10 Aligned_cols=109 Identities=15% Similarity=0.213 Sum_probs=87.9
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
++.++.++.++.+|++.|.+ +...+||+|+ +| +++|+++..|+++.... +. +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~--~~~G~v~~~~l~~~~~~-------------------~~--~-- 54 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP--DE--RPIGIVTERDIVRAVAA-------------------GI--D-- 54 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECC--CC--CEEEEeeHHHHHHHHhc-------------------cC--C--
Confidence 46789999999999999988 8899999998 78 99999999999753200 00 0
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
.. ..+. ..+..++.+|.+++++.+++.+|.+
T Consensus 55 ------------~~---------------~~v~----------------------~~~~~~~~~v~~~~~~~~~~~~~~~ 85 (112)
T cd04624 55 ------------LD---------------TPVS----------------------EIMTRDLVTVDPDEPVAEAAKLMRK 85 (112)
T ss_pred ------------Cc---------------cCHH----------------------HhccCCCEEECCCCcHHHHHHHHHH
Confidence 00 0000 1145678899999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+.+||+|++ |+++|+||..||++
T Consensus 86 ~~~~~~~Vv~~~--g~~~Gilt~~dl~~ 111 (112)
T cd04624 86 NNIRHHLVVDKG--GELVGVISIRDLVR 111 (112)
T ss_pred cCccEEEEEcCC--CcEEEEEEHHHhcc
Confidence 999999999987 89999999999985
No 79
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=1.1e-10 Score=97.40 Aligned_cols=97 Identities=21% Similarity=0.281 Sum_probs=80.3
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
+++++++++++.+|++.|.++++.++||++.+ ++++|+++..|+++.+.+... ......++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------~~~~G~v~~~~l~~~~~~~~~----~~~~~~~v~~ 64 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-------------GNLVGFLSEQDCLKQLLESSY----HCDGVATVRD 64 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-------------CeEEEEeehHHHHHHhhhhhh----ccCCCccHHH
Confidence 56889999999999999999999999999863 799999999999987654210 0112467899
Q ss_pred ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
+|... ++.+.+++++.++++.|. ++.+++||.++
T Consensus 65 ~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 99 (114)
T cd04629 65 IMTTE---VLTVSPDDSIVDLAQLMLKAKPKRYPVVDD 99 (114)
T ss_pred HhccC---ceEECCCCcHHHHHHHHHHhCCCccCEEEC
Confidence 99754 889999999999999999 77888988764
No 80
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=1.1e-10 Score=97.18 Aligned_cols=107 Identities=22% Similarity=0.240 Sum_probs=86.8
Q ss_pred CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939 221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
++++++.++.++.+|.+.|.+ +.+.+||+|+ | +++|+++..|+..+. .. .+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~--~~~G~v~~~dl~~~~-~~---~~~~----------------- 55 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG---G--RVVGIISRRDVEKAL-RH---GLGH----------------- 55 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC---C--EEEEEEEHHHHHHHH-hc---cccc-----------------
Confidence 467899999999999999988 8889999994 6 999999999987642 00 0000
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML 379 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~ 379 (433)
. .+. ..+..+++++.+++++.+++.+|.
T Consensus 56 -------------~-----------------~~~----------------------~~~~~~~~~v~~~~~l~~~~~~~~ 83 (110)
T cd04595 56 -------------A-----------------PVK----------------------DYMSTDVVTVPPDTPLSEVQELMV 83 (110)
T ss_pred -------------C-----------------cHH----------------------HHhcCCCEEECCCCcHHHHHHHHH
Confidence 0 000 124568889999999999999999
Q ss_pred HcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 380 SHRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
+++.+++||+| + |+++|+||..||++
T Consensus 84 ~~~~~~~~V~~-~--~~~~Gvvt~~di~~ 109 (110)
T cd04595 84 EHDIGRVPVVE-D--GRLVGIVTRTDLLR 109 (110)
T ss_pred HcCCCeeEEEe-C--CEEEEEEEhHHhhc
Confidence 99999999999 4 89999999999975
No 81
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.22 E-value=7.7e-11 Score=97.74 Aligned_cols=110 Identities=16% Similarity=0.249 Sum_probs=88.5
Q ss_pred CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939 221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
++++++.+++++.++++.|.+ +.+.+||+|+ | +++|+++..|+....... + ..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~--~~~G~v~~~dl~~~~~~~---------------~------~~ 54 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD---G--RLVGIVTLADIRRVPAEG---------------R------EA 54 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC---C--eEEEEEEHHHHHHHHhcC---------------c------cc
Confidence 357889999999999999998 8889999994 6 999999999997642000 0 00
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML 379 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~ 379 (433)
.. .+ . +.+..++.+|.+++++.+++++|.
T Consensus 55 -------------~~----------------~~--~--------------------~~~~~~~~~v~~~~~~~~~~~~~~ 83 (111)
T cd04612 55 -------------TV----------------LV--G--------------------DVMTRDPVTASPDETLRDALKRMA 83 (111)
T ss_pred -------------cc----------------CH--H--------------------HhccCCCeEECCCCCHHHHHHHHH
Confidence 00 00 0 224678899999999999999999
Q ss_pred HcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939 380 SHRATHVWVTEDESDDVLVGVVGYADILVA 409 (433)
Q Consensus 380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~ 409 (433)
+++.+++||+|++ ++++|+||..||+++
T Consensus 84 ~~~~~~~~V~~~~--~~~~G~it~~di~~~ 111 (111)
T cd04612 84 ERDIGRLPVVDDS--GRLVGIVSRSDLLRA 111 (111)
T ss_pred hCCCCeeeEEcCC--CCEEEEEEHHHhhhC
Confidence 9999999999987 899999999999863
No 82
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.22 E-value=1.1e-10 Score=98.04 Aligned_cols=119 Identities=17% Similarity=0.218 Sum_probs=88.7
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
++.++.++.++.+|++.|.+ ++..+||+|+ | +++|+++..|++.+.... .......++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~--~~~G~i~~~~l~~~~~~~----~~~~~~~~~~~---------- 62 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR---G--KLVGIVTDRDLKLASPSK----ATTLDIWELYY---------- 62 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC---C--eEEEEEeHHHHHHhhhcc----cccccchhhhh----------
Confidence 57789999999999999998 8889999994 7 999999999998753100 00000000000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
. . +. ..+ . ..+..++++|.+++++.+++..|.+
T Consensus 63 -~-------~--~~---------------~~~-----------------~-----~~~~~~~~~v~~~~~l~~~~~~~~~ 95 (122)
T cd04585 63 -L-------L--SK---------------IKV-----------------S-----DIMTRDPITVSPDASVEEAAELMLE 95 (122)
T ss_pred -h-------h--cc---------------cCH-----------------H-----HhccCCCeEeCCCCcHHHHHHHHHH
Confidence 0 0 00 000 0 2246688999999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||+|++ |+++|+||..||++
T Consensus 96 ~~~~~~~Vv~~~--~~~~Gvvt~~di~~ 121 (122)
T cd04585 96 RKISGLPVVDDQ--GRLVGIITESDLFR 121 (122)
T ss_pred cCCCceeEECCC--CcEEEEEEHHHhhh
Confidence 999999999987 89999999999986
No 83
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=1.1e-10 Score=97.33 Aligned_cols=109 Identities=14% Similarity=0.212 Sum_probs=83.5
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
++.++.+++++.+|++.|.+ +...++|.+ +| +++|+++..|+++..... ...+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~~--~~~G~v~~~dl~~~~~~~-------------------~~~~~- 56 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME---RG--ELVGLLTFREVLQAMAQH-------------------GAGVL- 56 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee---CC--EEEEEEEHHHHHHHHHhc-------------------CCchh-
Confidence 47789999999999999987 676666665 57 999999999997642000 00000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
. ..+ . ..+..++.++.+++++.+++.+|.+
T Consensus 57 -------------~---------------~~v------~----------------~~~~~~~~~v~~~~~l~~a~~~m~~ 86 (112)
T cd04625 57 -------------D---------------TTV------R----------------AIMNPEPIVASPDDSIDEVRRLMVE 86 (112)
T ss_pred -------------c---------------CCH------H----------------HHhCCCCeEECCCCCHHHHHHHHHH
Confidence 0 000 0 1145678899999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||+|+ |+++|+||.+||++
T Consensus 87 ~~~~~l~Vv~~---~~~~Gvvt~~dl~~ 111 (112)
T cd04625 87 RHLRYLPVLDG---GTLLGVISFHDVAK 111 (112)
T ss_pred cCCCeeeEEEC---CEEEEEEEHHHhhc
Confidence 99999999985 89999999999986
No 84
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.22 E-value=6.6e-11 Score=124.74 Aligned_cols=113 Identities=17% Similarity=0.163 Sum_probs=95.1
Q ss_pred CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC---CcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccc
Q 013939 218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE---DQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVE 293 (433)
Q Consensus 218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~---g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~ 293 (433)
.|.++++++.+++++.+|+++|.+ +++++||+|+ + + +++|+||.+||+... . ..
T Consensus 85 ~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~--~~~~~--~lvGIVt~rDL~~~~-~------~~----------- 142 (450)
T TIGR01302 85 GIISDPVTISPETTVADVLELMERKGISGIPVVED--GDMTG--KLVGIITKRDIRFVK-D------KG----------- 142 (450)
T ss_pred ceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeC--CCCCC--eEEEEEEHHHHhhhh-c------CC-----------
Confidence 466789999999999999999999 9999999997 6 6 999999999996421 0 00
Q ss_pred cCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCC-CCCeEecCCCCHH
Q 013939 294 DNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGR-STPLTCKITSSLA 372 (433)
Q Consensus 294 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~it~~p~~sL~ 372 (433)
. .+ . ..|+ .+++++.++++|.
T Consensus 143 -------------------~-----------------~V------~----------------dvm~~~~~~~V~~~~sl~ 164 (450)
T TIGR01302 143 -------------------K-----------------PV------S----------------EVMTREEVITVPEGIDLE 164 (450)
T ss_pred -------------------C-----------------CH------H----------------HhhCCCCCEEECCCCcHH
Confidence 0 00 0 1135 4899999999999
Q ss_pred HHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 373 AVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 373 ~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
+++..|.+++++++||||++ |+++|+||+.||++.+..
T Consensus 165 eal~~m~~~~~~~lpVVDe~--G~lvGiVT~~DIl~~~~~ 202 (450)
T TIGR01302 165 EALKVLHEHRIEKLPVVDKN--GELVGLITMKDIVKRRKF 202 (450)
T ss_pred HHHHHHHHcCCCeEEEEcCC--CcEEEEEEhHHhhhcccC
Confidence 99999999999999999998 999999999999999754
No 85
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.22 E-value=5.4e-11 Score=99.17 Aligned_cols=110 Identities=11% Similarity=0.158 Sum_probs=86.5
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.+++++.++++.|.+ +.+.++|++ +| +++|+++.+|++..... . +. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~--~~~G~v~~~dl~~~~~~-------~-----------~~---~- 54 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD---GN--KLVGIFTSKDIALRVVA-------Q-----------GL---D- 54 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE---CC--EEEEEEEhHHHHHHHHh-------c-----------CC---C-
Confidence 57889999999999999988 888999998 47 99999999999742100 0 00 0
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
... ..+ . ..+..++.+|.+++++.+++..|.+
T Consensus 55 -----------~~~---------------~~v----------------~------~i~~~~~~~v~~~~~l~~~~~~~~~ 86 (113)
T cd04587 55 -----------PES---------------TLV----------------E------RVMTPNPVCATSDTPVLEALHLMVQ 86 (113)
T ss_pred -----------cCc---------------CCH----------------H------HhcCCCCeEEcCCCCHHHHHHHHHH
Confidence 000 000 0 1246678899999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||+|++ ++++|+||..||+.
T Consensus 87 ~~~~~l~Vv~~~--~~~~Gvvs~~dl~~ 112 (113)
T cd04587 87 GKFRHLPVVDKS--GQVVGLLDVTKLTH 112 (113)
T ss_pred cCCCcccEECCC--CCEEEEEEHHHhcc
Confidence 999999999987 89999999999975
No 86
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.22 E-value=5.9e-11 Score=118.51 Aligned_cols=126 Identities=15% Similarity=0.154 Sum_probs=101.2
Q ss_pred CCCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhc
Q 013939 208 LPLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANL 283 (433)
Q Consensus 208 l~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l 283 (433)
+..+++++ +|++ +++++.+++++.++++.+.+ +++.+||+++ + + +++|+++.+|++... ..
T Consensus 64 l~~~~V~d--iMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~--~~d--~iiGiv~~kDll~~~--------~~- 128 (292)
T PRK15094 64 IADQRVRD--IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD--HIEGILMAKDLLPFM--------RS- 128 (292)
T ss_pred cCCCEEeE--EccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecC--CCC--cEEEEEEHHHHHhHh--------hc-
Confidence 45667776 6987 79999999999999999999 8999999986 4 5 999999999997432 00
Q ss_pred cchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCe
Q 013939 284 SAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPL 363 (433)
Q Consensus 284 ~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 363 (433)
.. .. . .+ . . ..++++
T Consensus 129 ----------~~-----------------~~--~-------------~l------~----------------~-l~r~~~ 143 (292)
T PRK15094 129 ----------DA-----------------EA--F-------------SM------D----------------K-VLRQAV 143 (292)
T ss_pred ----------cC-----------------Cc--C-------------CH------H----------------H-HcCCCc
Confidence 00 00 0 00 0 1 123567
Q ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 364 TCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 364 t~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
++.+++++.+++.+|.+++.|.++|||+. |.++||||+.||+..+..+-.
T Consensus 144 ~V~e~~~l~~~L~~m~~~~~~~a~VvDe~--G~viGiVTleDIle~ivGei~ 193 (292)
T PRK15094 144 VVPESKRVDRMLKEFRSQRYHMAIVIDEF--GGVSGLVTIEDILELIVGEIE 193 (292)
T ss_pred CcCCCCcHHHHHHHHHhcCCEEEEEEeCC--CCEEEEeEHHHHHHHHhCCCc
Confidence 99999999999999999999999999997 899999999999999997643
No 87
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=1.3e-10 Score=95.83 Aligned_cols=104 Identities=13% Similarity=0.174 Sum_probs=86.2
Q ss_pred CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939 221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
++++++.++.++.++++.|.+ +...+||+| ++ +++|+++..||+... . ..++.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~~--~~~g~v~~~~l~~~~-~-------~~~~~------------- 55 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVD---NG--KVVGIVSARDLLGKD-P-------DETVE------------- 55 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeE---CC--EEEEEEEHHHhhccC-c-------cccHH-------------
Confidence 467889999999999999987 778899998 46 999999999987531 0 00000
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML 379 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~ 379 (433)
..+...+.++.+++++.++++.|.
T Consensus 56 --------------------------------------------------------~~~~~~~~~v~~~~~l~~~~~~~~ 79 (107)
T cd04610 56 --------------------------------------------------------EIMSKDLVVAVPEMDIMDAARVMF 79 (107)
T ss_pred --------------------------------------------------------HhCCCCCeEECCCCCHHHHHHHHH
Confidence 113556889999999999999999
Q ss_pred HcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 380 SHRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
+++.+++||+|++ |+++|+|+..||++
T Consensus 80 ~~~~~~~~Vv~~~--g~~~Gvi~~~di~~ 106 (107)
T cd04610 80 RTGISKLPVVDEN--NNLVGIITNTDVIR 106 (107)
T ss_pred HhCCCeEeEECCC--CeEEEEEEHHHhhc
Confidence 9999999999987 89999999999986
No 88
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=9.8e-11 Score=98.28 Aligned_cols=96 Identities=22% Similarity=0.295 Sum_probs=78.8
Q ss_pred CCeEEEcCCccHHHHHHHHHhcC-CCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcc
Q 013939 18 PELAEFYETETVEAAIKAIGEST-ECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPV 96 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~-I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV 96 (433)
+++.++++++++.+|++.|.+++ +..+||+|.. ++++|+++..||+...... ..+.++
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-------------~~~~G~v~~~dl~~~~~~~--------~~~~~v 59 (114)
T cd04801 1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-------------GRYVGIISLADLRAIPTSQ--------WAQTTV 59 (114)
T ss_pred CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-------------CcEEEEEEHHHHHHHHHhh--------ccccch
Confidence 35788999999999999998775 8999999863 7999999999998865321 124678
Q ss_pred hhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 97 SQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 97 ~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
.++|... .+++++.+++++.+|++.|. ++.+++||.++
T Consensus 60 ~~~~~~~-~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~ 98 (114)
T cd04801 60 IQVMTPA-AKLVTVLSEESLAEVLKLLEEQGLDELAVVED 98 (114)
T ss_pred hhhhccc-ccceEECCCCcHHHHHHHHHHCCCCeeEEEcC
Confidence 8998642 23678999999999999999 78999999864
No 89
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.21 E-value=1.3e-10 Score=96.61 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=87.6
Q ss_pred CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939 221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
++++++.+++++.+|++.|.+ ++..+||+++ | +++|+++..|+++..... ..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~--~~~G~v~~~~l~~~~~~~----~~------------------ 53 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD---G--KLVGIVTLSDIAHAIARG----LE------------------ 53 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC---C--EEEEEEEHHHHHHHHhcc----cc------------------
Confidence 357889999999999999998 8999999994 6 999999999997642000 00
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML 379 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~ 379 (433)
.. .+. ..+..++.++.+++++.+++++|.
T Consensus 54 -------------~~----------------~v~----------------------~~~~~~~~~v~~~~~~~~~~~~~~ 82 (110)
T cd04588 54 -------------LA----------------KVK----------------------DVMTKDVITIDEDEQLYDAIRLMN 82 (110)
T ss_pred -------------cc----------------CHH----------------------HHhcCCceEECCCCCHHHHHHHHH
Confidence 00 000 113568899999999999999999
Q ss_pred HcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 380 SHRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
+++.+++||+|++ |+++|+||..||++
T Consensus 83 ~~~~~~~~V~~~~--~~~~G~i~~~dl~~ 109 (110)
T cd04588 83 KHNVGRLIVTDDE--GRPVGIITRTDILR 109 (110)
T ss_pred hcCCCEEEEECCC--CCEEEEEEhHHhhc
Confidence 9999999999987 89999999999985
No 90
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=2e-10 Score=95.61 Aligned_cols=93 Identities=24% Similarity=0.375 Sum_probs=79.2
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
+.+++.+++++.+|++.|.+++...+||++.. ++++|+++..|+.+++.... .+.++.+
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-------------~~~~G~v~~~~l~~~~~~~~--------~~~~v~~ 60 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-------------GHLVGLLTRDDLIRALAEGG--------PDAPVRG 60 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-------------CcEEEEeeHHHHHHHHHhcC--------CCCcHHH
Confidence 45789999999999999999999999999863 78999999999998765421 1357899
Q ss_pred ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
+|... ++.+++++++.+|++.|. ++.+++||.++
T Consensus 61 ~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~ 95 (111)
T cd04639 61 VMRRD---FPTVSPSATLDAVLRLMQQGGAPAVPVVDG 95 (111)
T ss_pred HhcCC---CcEECCCCcHHHHHHHHHhcCCceeeEEcC
Confidence 99754 899999999999999999 68899999754
No 91
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.21 E-value=1.6e-10 Score=96.03 Aligned_cols=96 Identities=23% Similarity=0.272 Sum_probs=80.4
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
+++.++++++++.+|++.|.++++..+||+|.+ ++++|+++..|+.+++.+.... -..++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------~~~~G~v~~~~l~~~~~~~~~~------~~~~v~ 61 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-------------GRLVGIVSLDDIREILFDPSLY------DLVVAS 61 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECCC-------------CCEEEEEEHHHHHHHHhccccc------ccEEHH
Confidence 357889999999999999999999999999863 7899999999999876432111 026788
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
++|... ++++++++++.++++.|. .+.+++||.++
T Consensus 62 ~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~ 97 (114)
T cd04613 62 DIMTKP---PVVVYPEDSLEDALKKFEDSDYEQLPVVDD 97 (114)
T ss_pred HhccCC---CcEEcCCCCHHHHHHHHhhCCccEeeEEeC
Confidence 999865 899999999999999998 78889999754
No 92
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.21 E-value=1.2e-10 Score=96.64 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=87.2
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
++.++.+++++.+|++.|.+ +...+||+|+ | +++|+++.+||.++... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~--~~~G~v~~~~l~~~~~~-------~------------------ 51 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD---G--RPLGIVTERDILRLLAS-------G------------------ 51 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC---C--EEEEEEeHHHHHHHHhc-------C------------------
Confidence 46789999999999999998 8889999984 7 99999999999865300 0
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
.. .. ..++ ..+..+++++.+++++.+++..|.+
T Consensus 52 ------------~~-~~------------~~v~----------------------~~~~~~~~~~~~~~~l~~~l~~~~~ 84 (111)
T cd04611 52 ------------PD-LQ------------TPVG----------------------EVMSSPLLTVPADTSLYDARQLMRE 84 (111)
T ss_pred ------------CC-CC------------cCHH----------------------HhcCCCceEECCCCCHHHHHHHHHH
Confidence 00 00 0000 1245688999999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||+|++ |+++|+||..||++
T Consensus 85 ~~~~~~~Vv~~~--~~~~Gvi~~~di~~ 110 (111)
T cd04611 85 HGIRHLVVVDDD--GELLGLLSQTDLLQ 110 (111)
T ss_pred cCCeEEEEECCC--CcEEEEEEhHHhhc
Confidence 999999999987 89999999999986
No 93
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=1.8e-10 Score=97.60 Aligned_cols=120 Identities=16% Similarity=0.171 Sum_probs=88.8
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.+++++.+|++.|.+ +++.+||+|+ | +++|+++..|+.++.... .........++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~--~~~G~v~~~~l~~~~~~~--~~~~~~~~~~~~~---------- 64 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED---N--ELVGVISDRDYLKAISPF--LGTAGETEKDLAT---------- 64 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC---C--eEEEEEEHHHHHHHHHHH--hccccchHHHHHH----------
Confidence 57889999999999999998 8999999994 7 999999999998653110 0000000000000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
.. ..+ + ..+..+++++.+++++.+++..|.+
T Consensus 65 ------------~~---------------~~~-----------------~-----~~~~~~~~~v~~~~~l~~~~~~~~~ 95 (122)
T cd04637 65 ------------LN---------------RRA-----------------H-----QIMTRDPITVSPDTPVDEASKLLLE 95 (122)
T ss_pred ------------HH---------------hHH-----------------H-----HhhcCCCeeeCCCCcHHHHHHHHHH
Confidence 00 000 0 1146678999999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILVA 409 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~~ 409 (433)
++.+++||+|++ ++++|+||+.|++++
T Consensus 96 ~~~~~~~vv~~~--~~~~Gvit~~dll~~ 122 (122)
T cd04637 96 NSISCLPVVDEN--GQLIGIITWKDLLKY 122 (122)
T ss_pred cCCCeEeEECCC--CCEEEEEEHHHhhhC
Confidence 999999999987 899999999999863
No 94
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.21 E-value=2e-10 Score=100.85 Aligned_cols=101 Identities=13% Similarity=0.169 Sum_probs=80.8
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch-----------
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED----------- 87 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~----------- 87 (433)
+++++++++++.+|++.|.+++++.+||+|.. ++++|+++..|+++++........
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-------------~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 68 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-------------GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKA 68 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-------------CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhc
Confidence 45789999999999999999999999999863 799999999999997753210000
Q ss_pred ------HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 88 ------QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 88 ------~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
.....+.+|+++|... ++.+.+++++.+|++.|. ++.+++||.++
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~ 120 (135)
T cd04621 69 GQKRYRYVKEVPLVAEDIMTEE---IITVSPNDDVVDAAKLMLEANISGLPVVDN 120 (135)
T ss_pred ccccccccccccccHHHhcCCC---CeEECCCCCHHHHHHHHHHcCCCEEEEEeC
Confidence 0001245899999754 889999999999999998 77889999764
No 95
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.20 E-value=1e-10 Score=97.54 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=86.9
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.+++++.+|++.|.+ +...+||+|+ | +++|++|..|++..... . ...+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~---~--~~~G~i~~~~l~~~~~~---------------~----~~~~~- 56 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN---D--RLVGIVTDRDIVVRAVA---------------E----GRDPD- 56 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC---C--EEEEEEEhHHHHHHHhh---------------c----cCCcc-
Confidence 57899999999999999988 8999999994 7 99999999998632100 0 00000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
. ..+ . ..+...+.++.+++++.+++..|.+
T Consensus 57 -------------~---------------~~~------~----------------~~~~~~~~~v~~~~~~~~~~~~~~~ 86 (113)
T cd04622 57 -------------T---------------TTV------G----------------DVMTRGVVTVTEDDDVDEAARLMRE 86 (113)
T ss_pred -------------c---------------CCH------H----------------HhccCCccEECCCCCHHHHHHHHHH
Confidence 0 000 0 2245678899999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||+|++ |+++|+||..|+++
T Consensus 87 ~~~~~~~V~~~~--~~~~G~it~~di~~ 112 (113)
T cd04622 87 HQVRRLPVVDDD--GRLVGIVSLGDLAR 112 (113)
T ss_pred cCCCeeeEECCC--CcEEEEEEHHHhhc
Confidence 999999999987 89999999999976
No 96
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.20 E-value=1.4e-10 Score=122.84 Aligned_cols=117 Identities=20% Similarity=0.214 Sum_probs=98.5
Q ss_pred hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch
Q 013939 8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED 87 (433)
Q Consensus 8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~ 87 (433)
.+++++|. ++++++++++++.+|++.|.+++++++||+|.+ ++++|+||..|+... .
T Consensus 89 VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~-------------gklvGIVT~rDL~~~--~------ 145 (479)
T PRK07807 89 VKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE-------------GRPVGVVTEADCAGV--D------ 145 (479)
T ss_pred cccccccc--cCCeEECCCCCHHHHHHHHHhcCCceEEEECCC-------------CeEEEEEeHHHHhcC--c------
Confidence 44566664 677999999999999999999999999999863 799999999998421 0
Q ss_pred HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccc
Q 013939 88 QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNN 166 (433)
Q Consensus 88 ~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 166 (433)
...+|+++|..+ ++++++++++.+|+++|. ++++++||+++++
T Consensus 146 ----~~~~V~diMt~~---~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g----------------------------- 189 (479)
T PRK07807 146 ----RFTQVRDVMSTD---LVTLPAGTDPREAFDLLEAARVKLAPVVDADG----------------------------- 189 (479)
T ss_pred ----cCCCHHHhccCC---ceEECCCCcHHHHHHHHHhcCCCEEEEEcCCC-----------------------------
Confidence 126799999865 999999999999999999 7899999986432
Q ss_pred cccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 167 LIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+++|+||+.||++....
T Consensus 190 -----------------~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 190 -----------------RLVGVLTRTGALRATIY 206 (479)
T ss_pred -----------------eEEEEEEHHHHHHHhhC
Confidence 45899999999998754
No 97
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.20 E-value=7.7e-11 Score=125.48 Aligned_cols=118 Identities=11% Similarity=0.021 Sum_probs=95.9
Q ss_pred CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCC-CCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccC
Q 013939 218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTS-EDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDN 295 (433)
Q Consensus 218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~-~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~ 295 (433)
.+..+++++.+++++.+|+++|.+ +++.+||+|++. ++ +++|+||.+|++... . ...++.
T Consensus 101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g--kLvGIVt~~DL~~~~-~------~~~~V~--------- 162 (495)
T PTZ00314 101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG--KLLGIVTSRDIDFVK-D------KSTPVS--------- 162 (495)
T ss_pred ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC--eEEEEEEHHHHhhcc-c------CCCCHH---------
Confidence 456778999999999999999999 999999999610 16 999999999997432 0 000000
Q ss_pred CCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCC--CCeEecCCCCHHH
Q 013939 296 VTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRS--TPLTCKITSSLAA 373 (433)
Q Consensus 296 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~it~~p~~sL~~ 373 (433)
+.|+. +++++++++++.+
T Consensus 163 ------------------------------------------------------------diMt~~~~lvtv~~~~sl~e 182 (495)
T PTZ00314 163 ------------------------------------------------------------EVMTPREKLVVGNTPISLEE 182 (495)
T ss_pred ------------------------------------------------------------HhhCCcCCceEeCCCCCHHH
Confidence 11344 7899999999999
Q ss_pred HHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 374 VMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 374 v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
++++|.+++++++||||++ ++++|+||++||++....+.+
T Consensus 183 Al~lm~e~~i~~LPVVd~~--g~liGIIT~~DIl~~~~~p~a 222 (495)
T PTZ00314 183 ANEVLRESRKGKLPIVNDN--GELVALVSRSDLKKNRGYPNA 222 (495)
T ss_pred HHHHHHHcCCCeEEEEcCC--CcEEEEEEehHhhhcccCchh
Confidence 9999999999999999998 999999999999999875443
No 98
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.20 E-value=1.6e-10 Score=95.41 Aligned_cols=78 Identities=14% Similarity=0.285 Sum_probs=69.4
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
+++++.+++++.+|++.|.+++++.+||+|.. ++++|+++..|++...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-------------~~~~Giv~~~dl~~~~------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD-------------GKLSGIITERDLIAKS------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-------------CCEEEEEEHHHHhcCC-------------------
Confidence 57899999999999999999999999999863 7999999999997631
Q ss_pred ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
.++++++++++.+|++.|. ++++++||.++
T Consensus 50 -------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~ 80 (96)
T cd04614 50 -------EVVTATKRTTVSECAQKMKRNRIEQIPIING 80 (96)
T ss_pred -------CcEEecCCCCHHHHHHHHHHhCCCeeeEECC
Confidence 0788999999999999998 88999999764
No 99
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.20 E-value=3.8e-10 Score=93.74 Aligned_cols=92 Identities=24% Similarity=0.350 Sum_probs=78.4
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
++++++++++++.+|++.|.+++...+||.|.. ++++|+++..|+++.+..+ ..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------~~~~G~v~~~~l~~~~~~~----------~~~~~ 58 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-------------GRLVGIVTSWDISKAVARD----------KKSVE 58 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-------------CcEEEEEeHHHHHHHHhhC----------ccCHH
Confidence 467899999999999999999999999999863 7999999999998865432 13588
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
++|... +.++.+++++.+|++.|. ++.+.+||.++
T Consensus 59 ~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 94 (110)
T cd04605 59 DIMTRN---VITATPDEPIDVAARKMERHNISALPVVDA 94 (110)
T ss_pred HhcCCC---CeEECCCCcHHHHHHHHHHhCCCEEeEECC
Confidence 888654 889999999999999999 77889988754
No 100
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=2.4e-10 Score=96.75 Aligned_cols=101 Identities=23% Similarity=0.302 Sum_probs=80.5
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch---HHhhcCCc
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED---QDKAMKTP 95 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~---~~~~l~~p 95 (433)
+++++.+++++.+|++.|.+.++..+||++.. ++++|+++..|+++++........ .......+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-------------GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVP 68 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-------------CCEEEEEEHHHHHHHhccccccccccccccccCcC
Confidence 46889999999999999999999999999863 799999999999987653211100 00112467
Q ss_pred chhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 96 VSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 96 V~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
+.++|..+ ++.+.+++++.++++.|. .+.+.+||.++
T Consensus 69 v~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~ 106 (122)
T cd04803 69 VAEVMKTD---VLTVTPDTPLREAAEIMVENKIGCLPVVDD 106 (122)
T ss_pred HHHhhCCC---CeEeCCCCcHHHHHHHHHHcCCCeEEEEcC
Confidence 88898754 899999999999999999 68888998754
No 101
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.19 E-value=3.5e-10 Score=93.48 Aligned_cols=91 Identities=16% Similarity=0.269 Sum_probs=78.0
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
+++.++++++++.+|++.|.++++..+||+|.. ++++|+++..|++..... ..++.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------~~~~G~v~~~dl~~~~~~-----------~~~v~ 57 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-------------NKLLGIVSLESLEQAYKE-----------AKSLE 57 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-------------CcEEEEEEHHHHHHHhhc-----------CCcHh
Confidence 356889999999999999999999999999863 799999999999876421 25788
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
++|... +..+++++++.++++.|. .+.+++||.++
T Consensus 58 ~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~ 93 (109)
T cd04583 58 DIMLED---VFTVQPDASLRDVLGLVLKRGPKYVPVVDE 93 (109)
T ss_pred HhhcCC---ceEECCCCcHHHHHHHHHHcCCceeeEECC
Confidence 888754 889999999999999999 68899999764
No 102
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.19 E-value=1.5e-10 Score=123.16 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=95.9
Q ss_pred CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939 218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV 296 (433)
Q Consensus 218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~ 296 (433)
+|..+++++.+++++.+|+++|.+ +++.+||+|+ ++ +++|+||.+||+... . ..
T Consensus 92 im~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~--~g--~lvGiVt~~DL~~~~-~------~~-------------- 146 (486)
T PRK05567 92 GVVTDPVTVTPDTTLAEALALMARYGISGVPVVDE--NG--KLVGIITNRDVRFET-D------LS-------------- 146 (486)
T ss_pred cccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc--CC--EEEEEEEHHHhhhcc-c------CC--------------
Confidence 577889999999999999999999 9999999998 78 999999999986321 0 00
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCC-CCCeEecCCCCHHHHH
Q 013939 297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGR-STPLTCKITSSLAAVM 375 (433)
Q Consensus 297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~it~~p~~sL~~v~ 375 (433)
. .+ . ..|. .++++|.+++++.+++
T Consensus 147 ----------------~-----------------~V------~----------------dim~~~~~v~v~~~~sl~eal 171 (486)
T PRK05567 147 ----------------Q-----------------PV------S----------------EVMTKERLVTVPEGTTLEEAL 171 (486)
T ss_pred ----------------C-----------------cH------H----------------HHcCCCCCEEECCCCCHHHHH
Confidence 0 00 0 1134 6899999999999999
Q ss_pred HHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 376 AQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 376 ~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
.+|.+++++++||+|++ |+++|+||..||++.+..
T Consensus 172 ~~m~~~~~~~lpVVDe~--g~lvGiIT~~DLl~~~~~ 206 (486)
T PRK05567 172 ELLHEHRIEKLPVVDDN--GRLKGLITVKDIEKAEEF 206 (486)
T ss_pred HHHHHcCCCEEEEEcCC--CcEEEEEEhHHhhhhhhC
Confidence 99999999999999998 999999999999998754
No 103
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.19 E-value=4.4e-10 Score=93.54 Aligned_cols=93 Identities=22% Similarity=0.332 Sum_probs=77.9
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
+++++++++++.+|++.|.++++.++||++.+ .++++|+++..|+++++.... . ..++.+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~------------~~~~~G~v~~~~l~~~~~~~~--~------~~~~~~ 61 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGD------------LDNIIGVVHVKDLLRALAEGE--E------DLDLRD 61 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCC------------CceEEEEEEHHHHHHHHHcCC--C------cCCHHH
Confidence 57899999999999999999999999999863 168999999999999765321 0 146777
Q ss_pred ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
+|. ++.++.+++++.++++.|. ++.+++||.++
T Consensus 62 ~~~----~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 95 (111)
T cd04590 62 LLR----PPLFVPESTPLDDLLEEMRKERSHMAIVVDE 95 (111)
T ss_pred Hhc----CCeecCCCCcHHHHHHHHHhcCCcEEEEEEC
Confidence 764 3788999999999999999 78999999764
No 104
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=4.6e-10 Score=93.52 Aligned_cols=94 Identities=26% Similarity=0.399 Sum_probs=80.1
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
++.++++++++.+|++.|.++++..+||.|.+ ++++|+++..|+++++.... ..+.++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------~~~~G~v~~~~l~~~~~~~~-------~~~~~v~~ 61 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-------------ERPIGIVTERDIVRAVAAGI-------DLDTPVSE 61 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-------------CCEEEEeeHHHHHHHHhccC-------CCccCHHH
Confidence 56789999999999999999999999999863 79999999999998875431 12467889
Q ss_pred ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
+|... ++++.+++++.++++.|. ++.+.+||.++
T Consensus 62 ~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~ 96 (112)
T cd04624 62 IMTRD---LVTVDPDEPVAEAAKLMRKNNIRHHLVVDK 96 (112)
T ss_pred hccCC---CEEECCCCcHHHHHHHHHHcCccEEEEEcC
Confidence 98754 899999999999999999 68888888754
No 105
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.18 E-value=3.9e-10 Score=112.61 Aligned_cols=164 Identities=14% Similarity=0.185 Sum_probs=121.6
Q ss_pred cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939 4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83 (433)
Q Consensus 4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~ 83 (433)
.|..++|+|+|.-..++++++.+++++++++.+.+++.+.+||++.. .++++|+|+..|++.++..+.
T Consensus 63 ~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~------------~d~iiGiv~~kDll~~~~~~~ 130 (292)
T PRK15094 63 DIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED------------KDHIEGILMAKDLLPFMRSDA 130 (292)
T ss_pred ccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC------------CCcEEEEEEHHHHHhHhhccC
Confidence 46778899999644489999999999999999999999999999853 268999999999997653211
Q ss_pred CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939 84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS 162 (433)
Q Consensus 84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 162 (433)
. ..++.++|.+ .+.+.+++++.++++.|. ++.|.++|+++.+
T Consensus 131 ~--------~~~l~~l~r~----~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G------------------------- 173 (292)
T PRK15094 131 E--------AFSMDKVLRQ----AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFG------------------------- 173 (292)
T ss_pred C--------cCCHHHHcCC----CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCC-------------------------
Confidence 0 1347788864 458999999999999999 6788888876422
Q ss_pred cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccC-CCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhcc
Q 013939 163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLG-ALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAP 240 (433)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~-~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~ 240 (433)
..+||||.+||+..+.+.+. +........+.. ....-+.+...+++.+..+.+.
T Consensus 174 ---------------------~viGiVTleDIle~ivGei~de~d~~~~~~i~~---~~~~~~~v~G~~~l~dl~~~l~ 228 (292)
T PRK15094 174 ---------------------GVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQ---LSRHTWTVRALASIEDFNEAFG 228 (292)
T ss_pred ---------------------CEEEEeEHHHHHHHHhCCCccccccccccccEE---eCCCeEEEEeccCHHHHHHHhC
Confidence 35899999999999864321 211111111221 2344677888888887777764
No 106
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=2.2e-10 Score=96.85 Aligned_cols=118 Identities=19% Similarity=0.139 Sum_probs=87.6
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.+++++.+|++.|.+ +...+||+|+ | +++|+++..|++.+..... ..++..
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~---~--~~~G~v~~~~l~~~~~~~~--------~~~~~~---------- 58 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG---G--KLVGIVTEKDIADALRSFR--------PLVRDR---------- 58 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC---C--EEEEEEchHHHHHhhhhhh--------hcccch----------
Confidence 57789999999999999988 8899999994 7 9999999999986531000 000000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
++ +..... .++ + ..+..++.+|.+++++.+++.+|.+
T Consensus 59 --------~~-~~~~~~------------~~~-----------------~-----~~~~~~~~~v~~~~~l~~~~~~~~~ 95 (121)
T cd04633 59 --------HQ-ERRIRN------------LPV-----------------S-----DIMTRPVITIEPDTSVSDVASLMLE 95 (121)
T ss_pred --------hh-hhhhhc------------cCH-----------------H-----HHccCCceEECCCCcHHHHHHHHHH
Confidence 00 000000 000 0 1245688999999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||+|+ |+++|+||..|+++
T Consensus 96 ~~~~~~~Vv~~---~~~~Gvi~~~dl~~ 120 (121)
T cd04633 96 NNIGGLPVVDD---GKLVGIVTRTDILR 120 (121)
T ss_pred cCCCcccEEEC---CEEEEEEEHHHhhc
Confidence 99999999997 79999999999986
No 107
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=3.3e-10 Score=94.46 Aligned_cols=94 Identities=16% Similarity=0.267 Sum_probs=79.6
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
+++++++++++.+|++.|.+++++.+||+|.. ++++|+++..|+..+.... ...+.++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------~~~~G~v~~~dl~~~~~~~-------~~~~~~v~~ 61 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-------------EKLKGVVTFTDILDLDLFE-------SFLEKKVFN 61 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-------------CCEEEEEehHHhHHHHhhc-------ccccCcHHH
Confidence 56889999999999999999999999999863 7999999999998764321 112467889
Q ss_pred ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
+|... ++.+.+++++.+|++.|. ++.+++||.++
T Consensus 62 ~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04626 62 IVSQD---VFYVNEEDTIDEALDIMREKQIGRLPVVDD 96 (111)
T ss_pred HhcCC---cEEEcCCCcHHHHHHHHHHcCCCeeeEeEC
Confidence 98754 889999999999999999 78999999764
No 108
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.17 E-value=2.2e-10 Score=96.39 Aligned_cols=107 Identities=12% Similarity=0.072 Sum_probs=83.0
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCC-CCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTS-EDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~-~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
+++++.+++++.+|++.|.+ ++..++|+|+.. +| +++|+++..|++... . ...++.
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~--~~~G~v~~~dl~~~~-~------~~~~v~------------- 60 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG--KLLGIVTSRDIDFLT-D------SETPLS------------- 60 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC--EEEEEEEhHHhhhhh-c------cCCCHH-------------
Confidence 46789999999999999988 888999998510 36 999999999986431 0 000000
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecC--CCCHHHHHHH
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKI--TSSLAAVMAQ 377 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p--~~sL~~v~~~ 377 (433)
..+...+.++.+ ++++.++++.
T Consensus 61 --------------------------------------------------------~~~~~~~~~~~~~~~~~l~~~l~~ 84 (114)
T cd04602 61 --------------------------------------------------------EVMTPREVLVVAPTGITLEEANEI 84 (114)
T ss_pred --------------------------------------------------------HhcCCCceEEECCCCCCHHHHHHH
Confidence 112444555544 9999999999
Q ss_pred HHHcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 378 MLSHRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 378 m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
|.+++.+++||||++ |+++|+||+.||++
T Consensus 85 ~~~~~~~~~pVv~~~--~~~~Gvit~~di~~ 113 (114)
T cd04602 85 LRESKKGKLPIVNDD--GELVALVTRSDLKK 113 (114)
T ss_pred HHhcCCCceeEECCC--CeEEEEEEHHHhhc
Confidence 999999999999987 89999999999975
No 109
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.17 E-value=2.1e-10 Score=95.49 Aligned_cols=108 Identities=18% Similarity=0.226 Sum_probs=86.1
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
++.++.++.++.+|.+.|.+ +++.+||+|+ | +++|+++..|+...... .++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~---~--~~~G~v~~~~l~~~~~~-----------~~~------------ 53 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD---G--RLVGIVTDRDLRNRVVA-----------EGL------------ 53 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC---C--EEEEEEEhHHHHHHHhc-----------cCC------------
Confidence 57889999999999999988 8899999984 7 99999999999753200 000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
. .. ..+ . ..+..+++++.++++|.++++.|.+
T Consensus 54 -~----------~~---------------~~i------~----------------~~~~~~~~~v~~~~~l~~~~~~~~~ 85 (111)
T cd04800 54 -D----------PD---------------TPV------S----------------EVMTAPPITIPPDATVFEALLLMLE 85 (111)
T ss_pred -C----------cc---------------CCH------H----------------HHhCCCCeEECCCCcHHHHHHHHHH
Confidence 0 00 000 0 1245688899999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||+|+ |+++|+||..||++
T Consensus 86 ~~~~~~~Vv~~---~~~~Giit~~di~~ 110 (111)
T cd04800 86 RGIHHLPVVDD---GRLVGVISATDLLR 110 (111)
T ss_pred cCCCeeeEeEC---CEEEEEEEHHHhhc
Confidence 99999999997 79999999999985
No 110
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.17 E-value=2.7e-10 Score=98.95 Aligned_cols=101 Identities=20% Similarity=0.302 Sum_probs=81.1
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC------------c
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC------------L 85 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~------------l 85 (433)
+++.++++++++.+|++.|.++++.++||+|.. ++++|+++..|+++++..... .
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-------------~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~ 68 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDD-------------GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGA 68 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-------------CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcch
Confidence 567899999999999999999999999999863 799999999999986543210 0
Q ss_pred ch----HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeee
Q 013939 86 ED----QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPK 134 (433)
Q Consensus 86 ~~----~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~ 134 (433)
.+ .......++.++|... ++.+.+++++.+|++.|. ++.+++||.+
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd 119 (135)
T cd04586 69 EELAAAFVRSHGRKVADVMTRP---VVTVGEDTPLAEVAELMEEHRIKRVPVVR 119 (135)
T ss_pred HHHHHHHHHhcCCCHHHHhCCC---ceEeCCCCcHHHHHHHHHHcCCCccCEec
Confidence 00 0011236788999754 899999999999999999 7899999976
No 111
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.17 E-value=2.1e-10 Score=120.95 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=99.8
Q ss_pred CCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc------CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHh
Q 013939 208 LPLSSISSLGVINPNYSSIEASVPAIEATLKAPG------DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALA 281 (433)
Q Consensus 208 l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~------~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~ 281 (433)
....++++ +|+++++++.++.++.+|++.|.+ ++..++|+|+ ++ +++|+++.+|++... .
T Consensus 128 ~~e~tvg~--iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~--~~--~l~GvV~l~dLl~a~-~------- 193 (449)
T TIGR00400 128 YSDDSAGR--IMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE--SK--HLKGVLSIRDLILAK-P------- 193 (449)
T ss_pred CCcchHHH--hCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC--CC--eEEEEEEHHHHhcCC-C-------
Confidence 45567776 699999999999999999999973 3567899997 78 999999999986421 0
Q ss_pred hccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCC
Q 013939 282 NLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRST 361 (433)
Q Consensus 282 ~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (433)
. . .+ + ..|.++
T Consensus 194 -----------------~-------------~-----------------~v-----------------~-----~im~~~ 204 (449)
T TIGR00400 194 -----------------E-------------E-----------------IL-----------------S-----SIMRSS 204 (449)
T ss_pred -----------------C-------------C-----------------cH-----------------H-----HHhCCC
Confidence 0 0 00 0 124667
Q ss_pred CeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 362 PLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 362 ~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
++++++++++.+|++.|.+++.+.+||||++ |+++|+||..|+++.+..+
T Consensus 205 ~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~--g~lvGiIt~~Dil~~l~~~ 254 (449)
T TIGR00400 205 VFSIVGVNDQEEVARLIQKYDFLAVPVVDNE--GRLVGIVTVDDIIDVIQSE 254 (449)
T ss_pred CeeECCCCCHHHHHHHHHHcCCCEEeEEcCC--CeEEEEEEHHHHHHHHHhh
Confidence 8899999999999999999999999999998 9999999999999999764
No 112
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.17 E-value=4.6e-10 Score=93.91 Aligned_cols=95 Identities=29% Similarity=0.410 Sum_probs=82.4
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
++++++.++.++.+|+.+|.++++.++||.+. .+++|++|..|+++++....... .++.
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~--------------~~l~Giit~~di~~~~~~~~~~~-------~~v~ 65 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--------------GKLVGIITERDILRALAAGGKRL-------LPVK 65 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--------------CEEEEEEEHHHHHHHHhccCCcc-------ccHH
Confidence 77899999999999999999999999999984 48999999999999886531111 1799
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHHc--CCCeEEeeecC
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMKQ--GVRRLLVPKSV 136 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~~--gi~rl~V~~~~ 136 (433)
++|..+ ++++.+++++.++++.|.+ +++++||.+++
T Consensus 66 ~v~~~~---~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~ 103 (117)
T COG0517 66 EVMTKP---VVTVDPDTPLEEALELMVERHKIRRLPVVDDD 103 (117)
T ss_pred HhccCC---cEEECCCCCHHHHHHHHHHHcCcCeEEEEECC
Confidence 999864 9999999999999999995 79999998754
No 113
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.17 E-value=2.6e-10 Score=123.53 Aligned_cols=127 Identities=17% Similarity=0.086 Sum_probs=104.6
Q ss_pred cchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCc
Q 013939 6 IYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCL 85 (433)
Q Consensus 6 ~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l 85 (433)
...+|+|+|. ++.+++++++++.+|++.|.+++...+||+|++ ++++|+|+..|+.+.+...+.
T Consensus 445 ~~~~V~dim~--~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-------------g~lvGiVt~~dL~~~l~~~~~- 508 (574)
T PRK01862 445 RTTQMRELIQ--PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-------------GRFRGAVALKDITSDLLDKRD- 508 (574)
T ss_pred hhCcHHHHhc--CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-------------CeEEEEEEHHHHHHHhhcccc-
Confidence 3457888875 567899999999999999999999999999963 799999999999986643211
Q ss_pred chHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccc
Q 013939 86 EDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSS 164 (433)
Q Consensus 86 ~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 164 (433)
.-+.++.++|..+ ++++++++++.+|++.|. ++.+++||+++++
T Consensus 509 -----~~~~~v~dim~~~---~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~--------------------------- 553 (574)
T PRK01862 509 -----TTDKTAADYAHTP---FPLLTPDMPLGDALEHFMAFQGERLPVVESEA--------------------------- 553 (574)
T ss_pred -----cccchHHHhccCC---CeeECCCCCHHHHHHHHHhcCCCeeeeEeCCC---------------------------
Confidence 1136789999865 899999999999999999 7899999987542
Q ss_pred cccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 165 NNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+++.+|+||+.|+++.+.+
T Consensus 554 -----------------~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 554 -----------------SPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred -----------------CCeEEEEEEHHHHHHHHHh
Confidence 1256899999999998854
No 114
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.17 E-value=4.4e-10 Score=93.51 Aligned_cols=95 Identities=23% Similarity=0.325 Sum_probs=79.8
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
+++.+++++.++.+|++.|.++++..+||+|. ++++|+++..|++.++..+. . ..+.++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--------------~~~~G~v~~~~l~~~~~~~~-~-----~~~~~i~ 60 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD--------------GRLVGIVTDRDLRNRVVAEG-L-----DPDTPVS 60 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--------------CEEEEEEEhHHHHHHHhccC-C-----CccCCHH
Confidence 45788999999999999999999999999984 69999999999998665431 1 1135788
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
++|..+ ++.++++++|.++++.|. ++.+++||.++
T Consensus 61 ~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04800 61 EVMTAP---PITIPPDATVFEALLLMLERGIHHLPVVDD 96 (111)
T ss_pred HHhCCC---CeEECCCCcHHHHHHHHHHcCCCeeeEeEC
Confidence 888754 899999999999999999 78999998754
No 115
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.17 E-value=3.5e-10 Score=93.47 Aligned_cols=93 Identities=23% Similarity=0.350 Sum_probs=75.2
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
+++++++++++.+|++.|.++++..+||++. ++++|+++..|+.+.+..... ..+.++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--------------~~~~G~v~~~dl~~~~~~~~~------~~~~~~~~ 61 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--------------GRVVGSIDESDLLDALIEGKA------KFSLPVRE 61 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--------------CeeEEEEeHHHHHHHHhcccc------ccCcCHHH
Confidence 4688999999999999999999999999984 589999999999998654211 12467888
Q ss_pred ccccCCCccEEeCCCCcHHHHHHHHHcCCCeEEeeec
Q 013939 99 VIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKS 135 (433)
Q Consensus 99 Im~~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~~~ 135 (433)
+|... ++++++++++.+++++|.+ .+.+||+++
T Consensus 62 ~~~~~---~~~v~~~~~l~~~~~~~~~-~~~~~vv~~ 94 (110)
T cd04609 62 VMGEP---LPTVDPDAPIEELSELLDR-GNVAVVVDE 94 (110)
T ss_pred HhcCC---CceeCCCCcHHHHHHHHHh-CCceeEEec
Confidence 98754 8899999999999999986 344566543
No 116
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.17 E-value=6.5e-10 Score=92.35 Aligned_cols=93 Identities=25% Similarity=0.353 Sum_probs=78.8
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
++++++++++++.+|++.|.++++.++||++. ++++|+++..|++++...... ..++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~v~~~~l~~~~~~~~~--------~~~v~ 58 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD--------------GKLVGIVTLSDIAHAIARGLE--------LAKVK 58 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--------------CEEEEEEEHHHHHHHHhcccc--------ccCHH
Confidence 46788999999999999999999999999984 589999999999987543211 16788
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
++|.. +++.+++++++.++++.|. .+.+.+||.++
T Consensus 59 ~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~ 94 (110)
T cd04588 59 DVMTK---DVITIDEDEQLYDAIRLMNKHNVGRLIVTDD 94 (110)
T ss_pred HHhcC---CceEECCCCCHHHHHHHHHhcCCCEEEEECC
Confidence 88874 4999999999999999999 78899998754
No 117
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.17 E-value=4.1e-10 Score=92.61 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=84.7
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.+++++.++++.|.+ +...+||+| +| +++|+++..|+.+.... .++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~~--~~~Giv~~~~l~~~~~~--------~~~~-------------- 54 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE---DG--KLVGIITSRDVRRAHPN--------RLVA-------------- 54 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE---CC--EEEEEEehHHhhccccc--------CCHH--------------
Confidence 56789999999999999988 788999997 47 99999999999753200 0000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
..+..++.++.+++++.+++++|.+
T Consensus 55 -------------------------------------------------------~~~~~~~~~v~~~~~l~~~~~~~~~ 79 (105)
T cd04599 55 -------------------------------------------------------DAMTREVVTISPEASLLEAKRLMEE 79 (105)
T ss_pred -------------------------------------------------------HHccCCCEEECCCCCHHHHHHHHHH
Confidence 1135578899999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++..++||+|+ |+++|+||..||+.
T Consensus 80 ~~~~~~~Vv~~---~~~~G~it~~~l~~ 104 (105)
T cd04599 80 KKIERLPVLRE---RKLVGIITKGTIAL 104 (105)
T ss_pred cCCCEeeEEEC---CEEEEEEEHHHhcc
Confidence 99999999997 79999999999973
No 118
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.17 E-value=4.9e-10 Score=93.97 Aligned_cols=94 Identities=21% Similarity=0.320 Sum_probs=75.7
Q ss_pred CeEEEcCCccHHHHHHHHHhcC-CCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 19 ELAEFYETETVEAAIKAIGEST-ECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~-I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
+.++++++.++.+|++.|.+++ ...+||.+. ++++|+++..|++.++...... .+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~v~~~dl~~~~~~~~~~------~~~~i~ 61 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK--------------GRLLGIFTERDIVRLTAIGKDL------SDLPIG 61 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC--------------CcEEEEEeHHHHHHHHhcCCCc------cccCHH
Confidence 4578999999999999999988 677787773 6899999999999876432111 136788
Q ss_pred hccccCCCccEEeCCC--CcHHHHHHHHH-cCCCeEEeeec
Q 013939 98 QVIVPNNSLLKQVDPG--TRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~--~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
++|... ++++.++ +++.+|++.|. ++.+.+||.++
T Consensus 62 ~~~~~~---~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~ 99 (115)
T cd04620 62 EVMTQP---VVTLQESEIQDIFTALSLFRQHQIRHLPVLDD 99 (115)
T ss_pred HhcCCC---cEEEecccccCHHHHHHHHHHhCCceEEEEcC
Confidence 999754 8888887 79999999999 78899999764
No 119
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.16 E-value=2.9e-10 Score=94.73 Aligned_cols=109 Identities=21% Similarity=0.248 Sum_probs=86.0
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.+++++.++++.|.+ +.+.+||+++ + +++|+++..|++..... . ++ . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~--~~~G~v~~~dl~~~~~~-------~----~~----~---~--- 55 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN---E--KPVGIITERDLVKKVVS-------R----NL----K---P--- 55 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC---C--EEEEEEEHHHHHHHHhh-------c----cC----C---c---
Confidence 57789999999999999998 8899999994 6 99999999999864200 0 00 0 0
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
.. . .+ . ..+..++.+|.+++++.+++++|.+
T Consensus 56 ------------~~--~-------------~~------~----------------~~~~~~~~~v~~~~~l~~~~~~~~~ 86 (112)
T cd04802 56 ------------RE--V-------------PV------G----------------EVMSTPLITIDPNASLNEAAKLMAK 86 (112)
T ss_pred ------------cc--C-------------CH------H----------------HhcCCCcEEECCCCCHHHHHHHHHH
Confidence 00 0 00 0 1145678899999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||||+ ++++|+||+.||++
T Consensus 87 ~~~~~~~Vv~~---~~~~Gvi~~~di~~ 111 (112)
T cd04802 87 HGIKRLPVVDD---DELVGIVTTTDIVM 111 (112)
T ss_pred cCCCeeEEeeC---CEEEEEEEhhhhhc
Confidence 99999999997 59999999999975
No 120
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.16 E-value=5e-10 Score=119.18 Aligned_cols=174 Identities=18% Similarity=0.179 Sum_probs=125.2
Q ss_pred HhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHH
Q 013939 10 VGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQD 89 (433)
Q Consensus 10 v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~ 89 (433)
+.|++. ++++++++++++.+|+++|.++++..+||+|.. ++++|+|+..|+....
T Consensus 89 ~~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~-------------g~lvGiVt~~DL~~~~---------- 143 (486)
T PRK05567 89 SESGVV--TDPVTVTPDTTLAEALALMARYGISGVPVVDEN-------------GKLVGIITNRDVRFET---------- 143 (486)
T ss_pred hhhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC-------------CEEEEEEEHHHhhhcc----------
Confidence 445543 678999999999999999999999999999963 7999999999996421
Q ss_pred hhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccc
Q 013939 90 KAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLI 168 (433)
Q Consensus 90 ~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~ 168 (433)
..+.++.++|.. .+++++.+++++.++++.|. ++++.+||.++.+
T Consensus 144 -~~~~~V~dim~~--~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g------------------------------- 189 (486)
T PRK05567 144 -DLSQPVSEVMTK--ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNG------------------------------- 189 (486)
T ss_pred -cCCCcHHHHcCC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-------------------------------
Confidence 124689999972 24999999999999999999 7899999976532
Q ss_pred cccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeE
Q 013939 169 ANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIA 247 (433)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavp 247 (433)
..+|+||..|+++++.. ..... ..-+.| +-...+.+.++ ..++++.|.+ ++. +.
T Consensus 190 ---------------~lvGiIT~~DLl~~~~~-p~a~~----d~~g~l--~V~aai~~~~~--~~e~a~~L~~agvd-vi 244 (486)
T PRK05567 190 ---------------RLKGLITVKDIEKAEEF-PNACK----DEQGRL--RVGAAVGVGAD--NEERAEALVEAGVD-VL 244 (486)
T ss_pred ---------------cEEEEEEhHHhhhhhhC-CCccc----ccCCCE--EEEeecccCcc--hHHHHHHHHHhCCC-EE
Confidence 45899999999998631 11100 001111 11223333342 2788888888 766 55
Q ss_pred EecCCCCCcceEEeecchhhhhh
Q 013939 248 VLEPTSEDQYKIIGEISASKLWK 270 (433)
Q Consensus 248 VVd~~~~g~~klvGiIS~~DL~~ 270 (433)
++|.+ +| +..+.++.-+.++
T Consensus 245 vvD~a-~g--~~~~vl~~i~~i~ 264 (486)
T PRK05567 245 VVDTA-HG--HSEGVLDRVREIK 264 (486)
T ss_pred EEECC-CC--cchhHHHHHHHHH
Confidence 77752 46 7777777666554
No 121
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=5.2e-10 Score=93.21 Aligned_cols=95 Identities=16% Similarity=0.246 Sum_probs=77.6
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
+++.++++++++.+|++.|.+++...+||.+. ++++|+++..|+.+++... .. .....++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~v~~~dl~~~~~~~-~~----~~~~~~v~ 61 (112)
T cd04625 1 DTIYTVAPETLLSEAVATMAEQDLGSLVVMER--------------GELVGLLTFREVLQAMAQH-GA----GVLDTTVR 61 (112)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeEEEeeC--------------CEEEEEEEHHHHHHHHHhc-CC----chhcCCHH
Confidence 35788999999999999999999888877753 7999999999999876531 00 01136799
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeee
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPK 134 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~ 134 (433)
++|... +.++++++++.+|++.|. ++.+++||.+
T Consensus 62 ~~~~~~---~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~ 96 (112)
T cd04625 62 AIMNPE---PIVASPDDSIDEVRRLMVERHLRYLPVLD 96 (112)
T ss_pred HHhCCC---CeEECCCCCHHHHHHHHHHcCCCeeeEEE
Confidence 999754 889999999999999999 7899999975
No 122
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.16 E-value=2.5e-10 Score=119.00 Aligned_cols=125 Identities=16% Similarity=0.146 Sum_probs=101.6
Q ss_pred CCCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhcc
Q 013939 208 LPLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLS 284 (433)
Q Consensus 208 l~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~ 284 (433)
+..+++++ +|++ ++++++.++++.++++.|.+ +++++||.+++ .+ +++|+++.+|+..+. . .
T Consensus 188 l~~~~v~d--iMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~-~d--~ivGiv~~kDll~~~-~-------~-- 252 (408)
T TIGR03520 188 FGNTDTKQ--VMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET-ID--NITGVLYIKDLLPHL-N-------K-- 252 (408)
T ss_pred cCCCEeee--eCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC-CC--ceEEEEEHHHHHhHh-c-------c--
Confidence 44566776 6996 79999999999999999999 99999999862 24 999999999997432 0 0
Q ss_pred chhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeE
Q 013939 285 AGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLT 364 (433)
Q Consensus 285 ~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 364 (433)
... .+ . . ..+++++
T Consensus 253 ----------------------------~~~---------------~l------~----------------~-~~~~~~~ 266 (408)
T TIGR03520 253 ----------------------------KNF---------------DW------Q----------------S-LLREPYF 266 (408)
T ss_pred ----------------------------CCC---------------CH------H----------------H-HcCCCeE
Confidence 000 00 0 0 1347899
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 365 CKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 365 ~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
+.+++++.+++.+|.+++.|..+|+|+. |..+||||+.||+..+..+-.
T Consensus 267 Vpe~~~l~~ll~~m~~~~~~~aiVvDE~--G~~~GiVT~eDileeivgei~ 315 (408)
T TIGR03520 267 VPENKKLDDLLRDFQEKKNHLAIVVDEY--GGTSGLVTLEDIIEEIVGDIS 315 (408)
T ss_pred eCCCCcHHHHHHHHHhcCceEEEEEcCC--CCEEEEEEHHHHHHHHhCCCC
Confidence 9999999999999999999999999998 999999999999999986543
No 123
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=2.4e-10 Score=98.88 Aligned_cols=128 Identities=15% Similarity=0.204 Sum_probs=89.3
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHH-HHHhhccchhhhhccccCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAA-WALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~-~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
+++++.+++++.+|++.|.+ +++.+||+|+ +| +++|+++..|+..+...... ..... .....+.+
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~--~~--~~~G~i~~~~l~~~~~~~~~~~~~~~---~~~~~~~~------ 68 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN--EG--RVVGIVSEGDLIRKIYKGKGLFYVTL---LYSVIFLD------ 68 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECC--CC--CEEEEEeHHHHHHHHhccCCcccccc---cccccccc------
Confidence 57889999999999999988 8899999998 78 99999999999865311000 00000 00000000
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML 379 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~ 379 (433)
+ .. .+++....+ + ..+..++.++.+++++.+++..|.
T Consensus 69 ---~---------~~---------~~~~~~~~v-----------------~-----~~~~~~~~~v~~~~~l~~~~~~~~ 105 (132)
T cd04636 69 ---E---------SK---------IKKLLGKKV-----------------E-----EIMTKKVITVDEDTTIEDVARIMS 105 (132)
T ss_pred ---h---------HH---------HHHHcCCCH-----------------H-----HhccCCceEECCCCcHHHHHHHHH
Confidence 0 00 000000000 0 224667899999999999999999
Q ss_pred HcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 380 SHRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
+++.+++||+|+ |+++|+||..|+++
T Consensus 106 ~~~~~~~~V~~~---~~~iGvit~~dl~~ 131 (132)
T cd04636 106 KKNIKRLPVVDD---GKLVGIISRGDIIR 131 (132)
T ss_pred HCCCCeeEEEEC---CEEEEEEEHHHhhc
Confidence 999999999997 79999999999986
No 124
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.15 E-value=5.5e-10 Score=115.31 Aligned_cols=191 Identities=20% Similarity=0.184 Sum_probs=146.9
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
++++.+.+..++-+|...|.++++.++||.|.+. +.++.++|-.=|++|+-.....-.....+..++.
T Consensus 162 ~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~------------~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~ 229 (381)
T KOG1764|consen 162 PPFVSISPESSLLDAVLLLIKSRIHRVPVIDPET------------GEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLS 229 (381)
T ss_pred CCceeecCcHHHHHHHHHHHhCCccceeeecccc------------cceeeehhHHHHHHHHHHhhcccccHHHhhCCHH
Confidence 5569999999999999999999999999999542 6999999999999998643111112455666666
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCCCCC
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSS 176 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 176 (433)
++--.....+..+.+++++.+|++.|. +++..+||++..+
T Consensus 230 dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g--------------------------------------- 270 (381)
T KOG1764|consen 230 DLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENG--------------------------------------- 270 (381)
T ss_pred HhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCC---------------------------------------
Confidence 653322234888999999999999999 8899999987543
Q ss_pred CCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCccc----ccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecC
Q 013939 177 SSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISS----LGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEP 251 (433)
Q Consensus 177 ~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~----L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~ 251 (433)
..+|.++..|++.-..++ .+..+-...+++ ..+-...|+++.++.++.+++..|.. ++.++.|||+
T Consensus 271 -------~~v~~~s~~Dv~~l~~~~--~~~~~~~~~l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~ 341 (381)
T KOG1764|consen 271 -------KKVGNYSRFDVIHLAREG--TYNNLDLSCLSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE 341 (381)
T ss_pred -------ceecceehhhhhhhhhcC--ccCccchhHHHHHhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcC
Confidence 237889999998776542 222111110222 12233459999999999999999999 9999999998
Q ss_pred CCCCcceEEeecchhhhhhcc
Q 013939 252 TSEDQYKIIGEISASKLWKCD 272 (433)
Q Consensus 252 ~~~g~~klvGiIS~~DL~~~~ 272 (433)
+| +++|+||-+|+..+.
T Consensus 342 --~~--~l~GvvSLsDil~~l 358 (381)
T KOG1764|consen 342 --DG--VLVGVISLSDILSYL 358 (381)
T ss_pred --CC--cEEEEeeHHHHHHHH
Confidence 78 999999999998764
No 125
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=5.1e-10 Score=94.88 Aligned_cols=100 Identities=13% Similarity=0.164 Sum_probs=79.9
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCc--chH--HhhcCC
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCL--EDQ--DKAMKT 94 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l--~~~--~~~l~~ 94 (433)
+++++++++++.+|++.|.++++..+||+|. ++++|+++..|+++.+...... ... ......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 67 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--------------NELVGVISDRDYLKAISPFLGTAGETEKDLATLNR 67 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--------------CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHh
Confidence 5788999999999999999999999999984 6899999999999876431100 000 012346
Q ss_pred cchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 95 PVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 95 pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
++.++|..+ ++.+.+++++.++++.|. ++.+++||.++
T Consensus 68 ~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~ 106 (122)
T cd04637 68 RAHQIMTRD---PITVSPDTPVDEASKLLLENSISCLPVVDE 106 (122)
T ss_pred HHHHhhcCC---CeeeCCCCcHHHHHHHHHHcCCCeEeEECC
Confidence 788999754 999999999999999999 78888988754
No 126
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.14 E-value=7.2e-10 Score=92.52 Aligned_cols=94 Identities=20% Similarity=0.344 Sum_probs=78.5
Q ss_pred eEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchhc
Q 013939 20 LAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQV 99 (433)
Q Consensus 20 lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~I 99 (433)
..++.+++++.+|++.|.++++..+||+|.. ++++|+++..|+...+.+.. .....++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-------------~~~~G~v~~~dl~~~~~~~~------~~~~~~i~~~ 63 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-------------KRLVGIITRYDVLSYALESE------ELKDAKVREV 63 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-------------CCEEEEEEHHHHHHhhhhhh------hhcCCcHHHh
Confidence 4788999999999999999999999999863 78999999999987544321 1123678899
Q ss_pred cccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 100 IVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 100 m~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
|... +.++.+++++.++++.|. ++.+++||.++
T Consensus 64 ~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~ 97 (113)
T cd04615 64 MNSP---VITIDANDSIAKARWLMSNNNISRLPVLDD 97 (113)
T ss_pred ccCC---ceEECCCCcHHHHHHHHHHcCCCeeeEECC
Confidence 9754 899999999999999998 77889999754
No 127
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.14 E-value=3.7e-10 Score=93.65 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=82.7
Q ss_pred EEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCCC
Q 013939 224 SSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFP 302 (433)
Q Consensus 224 itv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~ 302 (433)
+++.++.++.+|++.|.+ +++.+||+|+ | +++|+++..|+++.. . .++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~--~~~G~v~~~~l~~~~-~--------~~~~---------------- 53 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY---N--KFLGAVYLKDIENAT-Y--------GDVV---------------- 53 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC---C--EEEEEEEHHHHhhhc-c--------cchh----------------
Confidence 478999999999999998 8999999994 6 999999999987532 0 0000
Q ss_pred CcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcC
Q 013939 303 DYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHR 382 (433)
Q Consensus 303 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~ 382 (433)
..+..+++++.+++++.+++.+|.+++
T Consensus 54 -----------------------------------------------------~~~~~~~~~v~~~~~l~~a~~~~~~~~ 80 (104)
T cd04594 54 -----------------------------------------------------DYIVRGIPYVRLTSTAEEAWEVMMKNK 80 (104)
T ss_pred -----------------------------------------------------hhhhcCCcEEcCCCCHHHHHHHHHHcC
Confidence 113456789999999999999999999
Q ss_pred CCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 383 ATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 383 vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
.+++||+|+ |+++|+||..||++
T Consensus 81 ~~~~~Vv~~---~~~iGvit~~dl~~ 103 (104)
T cd04594 81 TRWCPVVDD---GKFKGIVTLDSILD 103 (104)
T ss_pred cceEEEEEC---CEEEEEEEHHHhhc
Confidence 999999984 89999999999975
No 128
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.14 E-value=6.2e-10 Score=91.85 Aligned_cols=89 Identities=12% Similarity=0.047 Sum_probs=75.3
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
++++++++++++.+|++.|.+++...+||+|.. ++++|+++..|+++.. ..++.
T Consensus 1 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-------------g~~~Giv~~~dl~~~~-------------~~~~~ 54 (106)
T cd04582 1 TEPITVRPDDPLSDALGLMDDSDLRALTVVDAD-------------GQPLGFVTRREAARAS-------------GGCCG 54 (106)
T ss_pred CCCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-------------CCEEEEEeHHHHHHhc-------------ccchh
Confidence 356789999999999999999999999999853 7999999999998642 13477
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
++|... +..+.+++++.++++.|. ++++.+||.++
T Consensus 55 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~ 90 (106)
T cd04582 55 DHAEPF---KVTVSVDDDLRIVLSRMFAHDMSWLPCVDE 90 (106)
T ss_pred hhcccC---CEEECCCCCHHHHHHHHHHCCCCeeeEECC
Confidence 888653 778999999999999999 78999999754
No 129
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.13 E-value=3.6e-10 Score=94.71 Aligned_cols=101 Identities=20% Similarity=0.228 Sum_probs=84.5
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCC-CCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTS-EDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~-~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
.+..+.+++++.++.+.|.+ +...+||++++. +| +++|+++.+|+.+.. . .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~--~~~G~v~~~dl~~~~-~-------~----------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP--RLVGYILRSQLVVAL-K-------N----------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCC--EEEEEEeHHHHHHHH-H-------H-----------------
Confidence 47789999999999999988 789999998611 26 999999999986532 0 0
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML 379 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~ 379 (433)
.|..++.++.+++++.+++..|.
T Consensus 56 ---------------------------------------------------------~m~~~~~~v~~~~~l~~~~~~~~ 78 (105)
T cd04591 56 ---------------------------------------------------------YIDPSPFTVSPRTSLEKVHQLFR 78 (105)
T ss_pred ---------------------------------------------------------hccCCCceECCCCcHHHHHHHHH
Confidence 02446778999999999999999
Q ss_pred HcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939 380 SHRATHVWVTEDESDDVLVGVVGYADILVA 409 (433)
Q Consensus 380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~ 409 (433)
+++.+++||+++ |+++|+||+.||+++
T Consensus 79 ~~~~~~~pVv~~---~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 79 KLGLRHLLVVDE---GRLVGIITRKDLLKA 105 (105)
T ss_pred HcCCCEEEEEEC---CeEEEEEEhhhhhcC
Confidence 999999999965 899999999999863
No 130
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.13 E-value=6.5e-10 Score=92.60 Aligned_cols=95 Identities=24% Similarity=0.317 Sum_probs=79.5
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
++.++++++++.++++.|.+.+++.+||+|.+ ++++|+++..|+.+.+.+.... -..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------~~~~G~v~~~~i~~~~~~~~~~------~~~~v~~ 63 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-------------GRLVGIFTDGDLRRALEKGLDI------LTLPVAD 63 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-------------CCEEEEechHHHHHHHhccCcc------ccCCHHH
Confidence 45678999999999999999999999999863 7999999999999887543111 1257999
Q ss_pred ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
+|... ..++.+++++.++++.|. ++.+++||.+.
T Consensus 64 ~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~ 98 (114)
T cd04604 64 VMTRN---PKTIDPDALAAEALELMEENKITALPVVDD 98 (114)
T ss_pred hhccC---CeEECCCCcHHHHHHHHHHcCCCEEEEECC
Confidence 99764 789999999999999999 78899999753
No 131
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.13 E-value=3.5e-10 Score=120.53 Aligned_cols=107 Identities=17% Similarity=0.234 Sum_probs=85.8
Q ss_pred hhHhhhhcCC-CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcc
Q 013939 8 HVVGDLTVGK-PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLE 86 (433)
Q Consensus 8 ~~v~DL~~~k-~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~ 86 (433)
++|.+++.+. ....++++++|+.+|++.|.+++++.+||+|.... +++++||||..||... .
T Consensus 94 ~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~----------~gkLvGIVT~~DLr~~--~----- 156 (502)
T PRK07107 94 RRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTA----------HGKLLGIVTSRDYRIS--R----- 156 (502)
T ss_pred HHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCc----------CCEEEEEEEcHHhhcc--c-----
Confidence 3467776533 34479999999999999999999999999985210 2799999999999532 1
Q ss_pred hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 87 DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 87 ~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
...+.+|+++|+.. .+++++.+++++.+|+++|. ++++++||+++
T Consensus 157 ---~~~~~~V~dIMt~~-~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~ 202 (502)
T PRK07107 157 ---MSLDTKVKDFMTPF-EKLVTANEGTTLKEANDIIWDHKLNTLPIVDK 202 (502)
T ss_pred ---cCCCCCHHHHhCCC-CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence 12357899999852 24899999999999999999 89999999864
No 132
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.12 E-value=1.2e-09 Score=91.00 Aligned_cols=92 Identities=23% Similarity=0.318 Sum_probs=79.4
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
+++++++.+.++.+|.+.|.+++...+||+|. ++++|+++..|+...+... ....++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~G~v~~~dl~~~~~~~--------~~~~~~~ 59 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--------------GRVVGIISRRDVEKALRHG--------LGHAPVK 59 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--------------CEEEEEEEHHHHHHHHhcc--------cccCcHH
Confidence 57889999999999999999999999999985 5899999999998765321 1246899
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeee
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPK 134 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~ 134 (433)
++|... ++++.+++++.++++.|. ++.+++||.+
T Consensus 60 ~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 94 (110)
T cd04595 60 DYMSTD---VVTVPPDTPLSEVQELMVEHDIGRVPVVE 94 (110)
T ss_pred HHhcCC---CEEECCCCcHHHHHHHHHHcCCCeeEEEe
Confidence 999754 889999999999999999 7899999976
No 133
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=7.2e-10 Score=93.64 Aligned_cols=100 Identities=21% Similarity=0.294 Sum_probs=79.7
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcc---hH-HhhcCC
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLE---DQ-DKAMKT 94 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~---~~-~~~l~~ 94 (433)
+++++++++++.+|++.|.++++..+||+|. ++++|+++..|++.++....... .. ...-..
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 67 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--------------GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNL 67 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--------------CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhcc
Confidence 5688999999999999999999999999984 69999999999998765321000 00 011235
Q ss_pred cchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 95 PVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 95 pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
++.++|..+ ++++.+++++.++++.|. .+.+++||.++
T Consensus 68 ~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 106 (121)
T cd04633 68 PVSDIMTRP---VITIEPDTSVSDVASLMLENNIGGLPVVDD 106 (121)
T ss_pred CHHHHccCC---ceEECCCCcHHHHHHHHHHcCCCcccEEEC
Confidence 788899754 899999999999999998 78999999765
No 134
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=1e-09 Score=92.89 Aligned_cols=102 Identities=23% Similarity=0.321 Sum_probs=80.1
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch--HH-hhcCC
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED--QD-KAMKT 94 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~--~~-~~l~~ 94 (433)
++++++++++++.+|++.|.+++..++||+|.. ++++|+++..|+++.........+ .. .....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 67 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA-------------GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASP 67 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCC-------------CcEEEEEEcHHHHhhccccccccchhhhhhhccC
Confidence 357899999999999999999999999999863 799999999999875321100000 00 01246
Q ss_pred cchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 95 PVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 95 pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
++.++|... ++.+++++++.++++.|. .+.+++||.++
T Consensus 68 ~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~ 106 (122)
T cd04635 68 TVEKIMSTP---VYSVTPDDSIATAVELMLEHDIGRLPVVNE 106 (122)
T ss_pred cHHHHhcCC---CeeECCCCCHHHHHHHHHHcCCCeeeEEcC
Confidence 788898754 899999999999999999 78999999764
No 135
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.12 E-value=1.1e-09 Score=91.86 Aligned_cols=100 Identities=20% Similarity=0.263 Sum_probs=79.4
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC-cc--hHHhh-cCC
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC-LE--DQDKA-MKT 94 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~-l~--~~~~~-l~~ 94 (433)
++.+++++.++.+|++.|.++++..+||+|. ++++|+++..|++.+...... .. +.... -+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 67 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--------------GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKI 67 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--------------CeEEEEEeHHHHHHhhhcccccccchhhhhhhccc
Confidence 5688999999999999999999999999984 689999999999987643210 00 00001 135
Q ss_pred cchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 95 PVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 95 pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
++.++|.++ ++++.+++++.++++.|. ++.+++||.++
T Consensus 68 ~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 106 (122)
T cd04585 68 KVSDIMTRD---PITVSPDASVEEAAELMLERKISGLPVVDD 106 (122)
T ss_pred CHHHhccCC---CeEeCCCCcHHHHHHHHHHcCCCceeEECC
Confidence 788898765 899999999999999999 77888988754
No 136
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.11 E-value=5.2e-10 Score=93.23 Aligned_cols=108 Identities=21% Similarity=0.226 Sum_probs=85.3
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.++.++.+|++.|.+ +...++|+|+ | +++|+++..|++.+... +...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~--~~~G~v~~~~l~~~~~~-------------------~~~~~-- 55 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG---D--PRLGIVTRTDLLDAVLL-------------------DGLPS-- 55 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC---C--eEEEEEEHHHHHHHHHc-------------------CCCCC--
Confidence 46789999999999999988 7888999994 6 89999999999754200 00000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
. ..+ . ..+..++.+|.+++++.+++..|.+
T Consensus 56 -------------~---------------~~i------~----------------~~~~~~~~~v~~~~~l~~~~~~~~~ 85 (111)
T cd04589 56 -------------S---------------TPV------G----------------EIATFPLITVDPDDFLFNALLLMTR 85 (111)
T ss_pred -------------C---------------CCH------H----------------HHhCCCcEEECCCCcHHHHHHHHHH
Confidence 0 000 0 1245688899999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||+|+ ++++|+||..|+++
T Consensus 86 ~~~~~~~Vv~~---~~~~G~it~~dl~~ 110 (111)
T cd04589 86 HRIHRVVVREG---GEVVGVLEQTDLLS 110 (111)
T ss_pred hCccEEEEeeC---CEEEEEEEhHHhhc
Confidence 99999999986 79999999999986
No 137
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.11 E-value=8.5e-10 Score=91.80 Aligned_cols=89 Identities=26% Similarity=0.321 Sum_probs=77.0
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
++.++++++++.+|++.|.+++...+||+|.+ ++++|+++..|++... .+.++++
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-------------~~~~G~v~~~~l~~~~------------~~~~v~~ 57 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-------------NKVVGIVTSKDVAGKD------------PDTTIEK 57 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-------------CeEEEEecHHHHhccc------------ccccHHH
Confidence 56899999999999999999999999999863 7999999999997531 1357899
Q ss_pred ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
+|... +.++++++++.++++.|. ++.+.+||.++
T Consensus 58 ~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 92 (108)
T cd04596 58 VMTKN---PITVNPKTSVASVAHMMIWEGIEMLPVVDD 92 (108)
T ss_pred HhcCC---CeEECCCCCHHHHHHHHHHcCCCeeeEEcC
Confidence 99754 889999999999999999 78999999754
No 138
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.11 E-value=7.5e-10 Score=95.14 Aligned_cols=98 Identities=16% Similarity=0.253 Sum_probs=75.3
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHH-----hhcCCCcchHHhhcC
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAF-----LAKSDCLEDQDKAMK 93 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~-----l~~~~~l~~~~~~l~ 93 (433)
+++++++++++.+|++.|.++++..+||+|.. ++++|+++..|+... +.+.. .....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-------------~~~~Giv~~~dl~~~~~~~~~~~~~-----~~~~~ 63 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-------------DNFIGVITAVDLLGEEPIKRIQEGG-----ISRSE 63 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-------------CcEEEEEEHHHHhhChhhHHHHHcC-----CCchh
Confidence 46889999999999999999999999999863 789999999999862 22110 01124
Q ss_pred CcchhccccCCCccEEe----CCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 94 TPVSQVIVPNNSLLKQV----DPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 94 ~pV~~Im~~~~~~~~~v----~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
.+++++|.+. ...+.+ .+++++.++++.|. ++.+++||+++
T Consensus 64 ~~v~~im~~~-~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~ 109 (126)
T cd04640 64 LTVADVMTPK-EDLKALDLEELENASVGDVVETLKASGRQHALVVDR 109 (126)
T ss_pred eEHHHhcCch-hhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC
Confidence 6799999754 112233 37899999999999 78999999865
No 139
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.10 E-value=5.7e-10 Score=94.09 Aligned_cols=119 Identities=16% Similarity=0.155 Sum_probs=88.1
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
++.++++++++.+|++.|.+ +.+.+||+|+ +| +++|+++..|+....... . . .++..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~--~~--~~~G~v~~~~l~~~~~~~-----~--~-~~~~~---------- 59 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDE--EG--RLVGIVTDRDLRDASPSP-----F--T-TLSEH---------- 59 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECC--CC--cEEEEEEHHHHHHHhhhh-----c--c-cchhh----------
Confidence 46789999999999999988 8889999998 78 999999999997643100 0 0 00000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
.. ..... ..+ . ..+..+++++.+++++.+++..|.+
T Consensus 60 -------~~---~~~~~------------~~v--~--------------------~~~~~~~~~i~~~~~l~~~~~~~~~ 95 (121)
T cd04584 60 -------EL---YLLLK------------MPV--K--------------------EIMTKDVITVHPLDTVEEAALLMRE 95 (121)
T ss_pred -------hh---hhhcC------------cCH--H--------------------HHhhCCCeEECCCCcHHHHHHHHHH
Confidence 00 00000 000 0 1145678899999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILVA 409 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~~ 409 (433)
++.+++||+|+ ++++|+||..||+++
T Consensus 96 ~~~~~~~V~~~---~~~~Gvv~~~di~~~ 121 (121)
T cd04584 96 HRIGCLPVVED---GRLVGIITETDLLRT 121 (121)
T ss_pred cCCCeEEEeeC---CEEEEEEEHHHhhcC
Confidence 99999999987 799999999999863
No 140
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.10 E-value=1.7e-09 Score=89.57 Aligned_cols=94 Identities=26% Similarity=0.311 Sum_probs=78.0
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
++++++.+++++.+|++.|.++++..+||+|. ++++|+++..|+....... ... ..++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~v~~~dl~~~~~~~-~~~------~~~~~ 59 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD--------------GRLVGIVTLADIRRVPAEG-REA------TVLVG 59 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--------------CeEEEEEEHHHHHHHHhcC-ccc------ccCHH
Confidence 46789999999999999999999999999984 5899999999998765321 100 13677
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
++|..+ +..+.+++++.++++.|. .+.+++||.++
T Consensus 60 ~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~ 95 (111)
T cd04612 60 DVMTRD---PVTASPDETLRDALKRMAERDIGRLPVVDD 95 (111)
T ss_pred HhccCC---CeEECCCCCHHHHHHHHHhCCCCeeeEEcC
Confidence 888754 899999999999999999 68899999754
No 141
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.10 E-value=1.2e-09 Score=91.10 Aligned_cols=95 Identities=28% Similarity=0.314 Sum_probs=78.5
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
+++++++++++.+|++.|.+++...+||++. ++++|+++..|++..+... +. ...+.++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--------------~~~~G~v~~~dl~~~~~~~-~~----~~~~~~v~~ 62 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--------------NKLVGIFTSKDIALRVVAQ-GL----DPESTLVER 62 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--------------CEEEEEEEhHHHHHHHHhc-CC----CcCcCCHHH
Confidence 4678999999999999999999999999984 6899999999998765432 11 111368999
Q ss_pred ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
+|... +.++.+++++.++++.|. ++.+++||.++
T Consensus 63 i~~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~ 97 (113)
T cd04587 63 VMTPN---PVCATSDTPVLEALHLMVQGKFRHLPVVDK 97 (113)
T ss_pred hcCCC---CeEEcCCCCHHHHHHHHHHcCCCcccEECC
Confidence 99754 889999999999999999 78889988764
No 142
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.10 E-value=2e-09 Score=89.19 Aligned_cols=93 Identities=28% Similarity=0.403 Sum_probs=79.0
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
++.++++++++.+|++.|.+++...+||.+. ++++|+++..|++++...... ...++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--------------~~~~G~v~~~~l~~~~~~~~~-------~~~~v~~ 60 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--------------GRPLGIVTERDILRLLASGPD-------LQTPVGE 60 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--------------CEEEEEEeHHHHHHHHhcCCC-------CCcCHHH
Confidence 4678999999999999999999999999984 689999999999987654211 2477899
Q ss_pred ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
+|... ++++.+++++.++++.|. .+.+.++|.++
T Consensus 61 ~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~ 95 (111)
T cd04611 61 VMSSP---LLTVPADTSLYDARQLMREHGIRHLVVVDD 95 (111)
T ss_pred hcCCC---ceEECCCCCHHHHHHHHHHcCCeEEEEECC
Confidence 98754 899999999999999999 78888988764
No 143
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.10 E-value=1.6e-09 Score=90.31 Aligned_cols=95 Identities=25% Similarity=0.358 Sum_probs=77.5
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHH-hhcCCCcchHHhhcCCcc
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAF-LAKSDCLEDQDKAMKTPV 96 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~-l~~~~~l~~~~~~l~~pV 96 (433)
++++++++++++.+|++.|.+++...+||+|. ++++|+++..|++.. +...... ...++
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~i~~~~l~~~~~~~~~~~------~~~~~ 60 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN--------------DRLVGIVTDRDIVVRAVAEGRDP------DTTTV 60 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--------------CEEEEEEEhHHHHHHHhhccCCc------ccCCH
Confidence 46789999999999999999999999999984 699999999999743 3221111 12358
Q ss_pred hhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 97 SQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 97 ~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
.++|... +.++.+++++.++++.|. .+.+++||.++
T Consensus 61 ~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~ 97 (113)
T cd04622 61 GDVMTRG---VVTVTEDDDVDEAARLMREHQVRRLPVVDD 97 (113)
T ss_pred HHhccCC---ccEECCCCCHHHHHHHHHHcCCCeeeEECC
Confidence 9999754 889999999999999999 78899998754
No 144
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.09 E-value=1.3e-09 Score=115.40 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=96.7
Q ss_pred hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch
Q 013939 8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED 87 (433)
Q Consensus 8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~ 87 (433)
.++.+++. ++++++.+++++.+|++.|.+++++.+||+|. ++++|+||.+|+... +
T Consensus 88 VKv~eim~--~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--------------gklvGIVT~rDL~~~---~----- 143 (475)
T TIGR01303 88 VKSRDLVL--DTPITLAPHDTVSDAMALIHKRAHGAAVVILE--------------DRPVGLVTDSDLLGV---D----- 143 (475)
T ss_pred cchhhccc--cCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--------------CEEEEEEEHHHhhcC---C-----
Confidence 34556654 56799999999999999999999999999883 689999999998321 1
Q ss_pred HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccc
Q 013939 88 QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNN 166 (433)
Q Consensus 88 ~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 166 (433)
...+|+++|..+ ++++++++++.+|+++|. ++++++||+++++
T Consensus 144 ----~~~~V~dIMt~~---litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g----------------------------- 187 (475)
T TIGR01303 144 ----RFTQVRDIMSTD---LVTAPADTEPRKAFDLLEHAPRDVAPLVDADG----------------------------- 187 (475)
T ss_pred ----CCCCHHHHccCC---ceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCC-----------------------------
Confidence 136899999865 999999999999999999 7899999986432
Q ss_pred cccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 167 LIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
.++|+||+.||++....
T Consensus 188 -----------------~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 188 -----------------TLAGILTRTGALRATIY 204 (475)
T ss_pred -----------------eEEEEEEHHHHHHHHhC
Confidence 45899999999998754
No 145
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.09 E-value=2.2e-09 Score=89.45 Aligned_cols=96 Identities=25% Similarity=0.363 Sum_probs=79.5
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
++++++++++++.+|++.|.+++...+||+|. ++++|+++..|++.++..... ...+.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~v~~~dl~~~~~~~~~-----~~~~~~~~ 61 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDN--------------EKPVGIITERDLVKKVVSRNL-----KPREVPVG 61 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--------------CEEEEEEEHHHHHHHHhhccC-----CcccCCHH
Confidence 35788999999999999999999999999984 599999999999987653211 01235788
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
++|... +..+.+++++.++++.|. .+.+.+||+++
T Consensus 62 ~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 97 (112)
T cd04802 62 EVMSTP---LITIDPNASLNEAAKLMAKHGIKRLPVVDD 97 (112)
T ss_pred HhcCCC---cEEECCCCCHHHHHHHHHHcCCCeeEEeeC
Confidence 999754 889999999999999999 78888998754
No 146
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.09 E-value=1.4e-09 Score=91.44 Aligned_cols=93 Identities=24% Similarity=0.336 Sum_probs=74.3
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
+++++++++++.+|++.|.++++..+||+|.... +++++|+++..|++.. .. -+.++++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~----------~~~~~G~v~~~dl~~~--~~---------~~~~v~~ 61 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKS----------GGKLLGIVTSRDIDFL--TD---------SETPLSE 61 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCc----------CCEEEEEEEhHHhhhh--hc---------cCCCHHH
Confidence 4688999999999999999999999999985200 2799999999998642 11 1357889
Q ss_pred ccccCCCccEEe--CCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 99 VIVPNNSLLKQV--DPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 99 Im~~~~~~~~~v--~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
+|... ..++ ++++++.++++.|. ++.+++||+++
T Consensus 62 ~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~ 98 (114)
T cd04602 62 VMTPR---EVLVVAPTGITLEEANEILRESKKGKLPIVND 98 (114)
T ss_pred hcCCC---ceEEECCCCCCHHHHHHHHHhcCCCceeEECC
Confidence 99754 5555 44999999999999 78999999754
No 147
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.09 E-value=9e-10 Score=89.88 Aligned_cols=110 Identities=21% Similarity=0.247 Sum_probs=88.3
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.+++++.++++.|.+ +...+||+++ ++ +++|+++.+|+...... . ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~--~~~G~v~~~~l~~~~~~-------~-----~~----------- 54 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD--DG--RLVGIVTERDLLRALAE-------G-----GL----------- 54 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC--CC--CEEEEEeHHHHHHHHHh-------c-----cC-----------
Confidence 46789999999999999998 8899999997 77 99999999999764200 0 00
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
.... .+ . ..+..+++++.+++++.++++.|.+
T Consensus 55 ------------~~~~--------------~~--~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (113)
T cd02205 55 ------------DPLV--------------TV--G--------------------DVMTRDVVTVSPDTSLEEAAELMLE 86 (113)
T ss_pred ------------Cccc--------------cH--H--------------------HHhcCCceecCCCcCHHHHHHHHHH
Confidence 0000 00 0 1145678899999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||+|++ ++++|+++..|+++
T Consensus 87 ~~~~~~~V~~~~--~~~~G~i~~~dl~~ 112 (113)
T cd02205 87 HGIRRLPVVDDE--GRLVGIVTRSDILR 112 (113)
T ss_pred cCCCEEEEEcCC--CcEEEEEEHHHhhc
Confidence 999999999998 99999999999976
No 148
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.08 E-value=4.1e-10 Score=118.75 Aligned_cols=171 Identities=12% Similarity=0.056 Sum_probs=132.8
Q ss_pred cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHh-----cCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHH
Q 013939 4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGE-----STECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAF 78 (433)
Q Consensus 4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e-----~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~ 78 (433)
.|...+++++|. ++++++++++|+.+|++.|.+ +++..+||+|.. ++++|+++.+|++..
T Consensus 127 ~~~e~tvg~iMt--~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~-------------~~l~GvV~l~dLl~a 191 (449)
T TIGR00400 127 SYSDDSAGRIMT--IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES-------------KHLKGVLSIRDLILA 191 (449)
T ss_pred CCCcchHHHhCc--CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC-------------CeEEEEEEHHHHhcC
Confidence 466788999995 789999999999999999986 567889998863 799999999999742
Q ss_pred hhcCCCcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccc
Q 013939 79 LAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNM 157 (433)
Q Consensus 79 l~~~~~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~ 157 (433)
. -+.+|+++|.+. ++++.+++++.+|++.|. ++.+.+||+++.+
T Consensus 192 --~----------~~~~v~~im~~~---~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g-------------------- 236 (449)
T TIGR00400 192 --K----------PEEILSSIMRSS---VFSIVGVNDQEEVARLIQKYDFLAVPVVDNEG-------------------- 236 (449)
T ss_pred --C----------CCCcHHHHhCCC---CeeECCCCCHHHHHHHHHHcCCCEEeEEcCCC--------------------
Confidence 1 135799999865 889999999999999999 6788999986532
Q ss_pred cccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHH
Q 013939 158 DASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATL 237 (433)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~ 237 (433)
+.+|+||..|+++.+.+... + ++|+...++..+++.+.+++.
T Consensus 237 --------------------------~lvGiIt~~Dil~~l~~~~~----------e--d~~~~~gv~~~~~~~l~~~~~ 278 (449)
T TIGR00400 237 --------------------------RLVGIVTVDDIIDVIQSEAT----------E--DFYMIAAVKPLDDSYFDTSIL 278 (449)
T ss_pred --------------------------eEEEEEEHHHHHHHHHhhhH----------H--HHHHhcCCCCCcchhhhchHH
Confidence 46899999999999865211 1 245544555556777888888
Q ss_pred hccc-CCCeeEEecCCCCCcceEEeecchhhhhhc
Q 013939 238 KAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKC 271 (433)
Q Consensus 238 ~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~ 271 (433)
.|.+ ++.-++|.- +.|++| ..+...
T Consensus 279 ~~~~~R~~wL~v~~--------~~~~~t-~~ii~~ 304 (449)
T TIGR00400 279 VMAKNRIIWLLVLL--------VSSTFT-ATIISN 304 (449)
T ss_pred HHHHhccchHHHHH--------HHHHHH-HHHHHH
Confidence 8888 777676654 357777 666654
No 149
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.07 E-value=1.8e-09 Score=88.73 Aligned_cols=88 Identities=20% Similarity=0.346 Sum_probs=75.9
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
+++++++++++.+|++.|.++++..+||+|. ++++|+++..|+.... .+.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~Giv~~~~l~~~~------------~~~~~~~ 55 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED--------------GKLVGIITSRDVRRAH------------PNRLVAD 55 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC--------------CEEEEEEehHHhhccc------------ccCCHHH
Confidence 5678999999999999999999999999983 6999999999997631 1256888
Q ss_pred ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
+|... ++++++++++.++++.|. ++..++||.++
T Consensus 56 ~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 90 (105)
T cd04599 56 AMTRE---VVTISPEASLLEAKRLMEEKKIERLPVLRE 90 (105)
T ss_pred HccCC---CEEECCCCCHHHHHHHHHHcCCCEeeEEEC
Confidence 88754 899999999999999999 78999999764
No 150
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.05 E-value=2e-09 Score=95.00 Aligned_cols=132 Identities=22% Similarity=0.202 Sum_probs=88.8
Q ss_pred CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHH---------HHhhccchhhhh
Q 013939 221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAW---------ALANLSAGQFVM 290 (433)
Q Consensus 221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~---------~~~~l~~~~f~~ 290 (433)
++++++.+++++.++++.|.+ +++++||+|+ | +++|+++..|+++........ .....++.+|+.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~---~--~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDG---G--KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFIN 75 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC---C--eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheee
Confidence 357899999999999999998 8999999994 7 999999999997643100000 000000000100
Q ss_pred ccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCC
Q 013939 291 GVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSS 370 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~s 370 (433)
+-. ...... . .....+ ...+..++.+|.++++
T Consensus 76 ~~~------------~~~~~~--~------------~~~~~v----------------------~~~~~~~~~~v~~~~~ 107 (143)
T cd04634 76 WEE------------TKRALT--D------------AGKMKV----------------------RDIMTKKVITISPDAS 107 (143)
T ss_pred hHH------------HHHHHH--H------------HhcCCH----------------------HHHcCCCCeEECCCCc
Confidence 000 000000 0 000000 0224668999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 371 LAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 371 L~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
+.+++..|.+++.+++||+|+ ++++|+||..|+++
T Consensus 108 l~~a~~~~~~~~~~~~~Vv~~---~~~~Gvvt~~dl~~ 142 (143)
T cd04634 108 IEDAAELMVRHKIKRLPVVED---GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHHHHHcCCCEEEEEEC---CEEEEEEEHHHhhc
Confidence 999999999999999999997 79999999999975
No 151
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.05 E-value=1.7e-09 Score=113.69 Aligned_cols=97 Identities=23% Similarity=0.304 Sum_probs=81.7
Q ss_pred ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC
Q 013939 5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC 84 (433)
Q Consensus 5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~ 84 (433)
+...+++|+|. ++++++++++++.+|++.|.++++.++||+|.+ ++++|+|+..|+++++.....
T Consensus 332 l~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~-------------~~~~Givt~~dl~~~~~~~~~ 396 (454)
T TIGR01137 332 LKNATVKDLHL--PAPVTVHPTETVGDAIEILREYGFDQLPVVTEA-------------GKVLGSVTLRELLSALFAGKA 396 (454)
T ss_pred hccCCHHHhCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-------------CeEEEEEEHHHHHHHHhccCC
Confidence 56678899885 678999999999999999999999999999863 799999999999987654211
Q ss_pred cchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHHc
Q 013939 85 LEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQ 125 (433)
Q Consensus 85 l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~~ 125 (433)
..+.+|.++|... ++++++++++.++++.|.+
T Consensus 397 ------~~~~~v~~im~~~---~~~v~~~~~l~~a~~~~~~ 428 (454)
T TIGR01137 397 ------NPDDAVSKVMSKK---FIQIGEGEKLSDLSKFLEK 428 (454)
T ss_pred ------CcCCCHHHhcCCC---CeEECCcCcHHHHHHHHHH
Confidence 1235899999754 8899999999999999974
No 152
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.05 E-value=2.7e-09 Score=88.31 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=85.3
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
++.++.++.++.++++.|.+ +++.+||+++ ++ +++|+++..|+.... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~--~~~g~v~~~~l~~~~-~-------------------------- 50 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK--SG--ELVGIITRKDLLRNP-E-------------------------- 50 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC--CC--cEEEEEEHHHHHhcc-c--------------------------
Confidence 47889999999999999988 8899999997 67 999999999986421 0
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
.. .+ . ..+..++.++.+++++.+++.+|.+
T Consensus 51 ------------~~----------------~~------~----------------~~~~~~~~~v~~~~~l~~~~~~~~~ 80 (106)
T cd04638 51 ------------EE----------------QL------A----------------LLMTRDPPTVSPDDDVKEAAKLMVE 80 (106)
T ss_pred ------------cc----------------hH------H----------------HHhcCCCceECCCCCHHHHHHHHHH
Confidence 00 00 0 1135578889999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
++.+++||+|+ |+++|+||..|+++
T Consensus 81 ~~~~~~~Vvd~---~~~~G~it~~d~~~ 105 (106)
T cd04638 81 NNIRRVPVVDD---GKLVGIVTVADIVR 105 (106)
T ss_pred cCCCEEEEEEC---CEEEEEEEHHHhhc
Confidence 99999999996 79999999999975
No 153
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.05 E-value=1.7e-09 Score=115.49 Aligned_cols=114 Identities=16% Similarity=0.104 Sum_probs=95.6
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
++++++++++|+.+|+++|.+++++.+||+|.... +++++|+||..||... . ..++||+
T Consensus 108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~----------~GklvGIVT~~DL~~v-~----------~~~~~V~ 166 (505)
T PLN02274 108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTM----------GSKLLGYVTKRDWDFV-N----------DRETKLS 166 (505)
T ss_pred CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCc----------CCeEEEEEEHHHHhhc-c----------ccCCcHH
Confidence 67899999999999999999999999999985310 2699999999999532 1 1257899
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCCCCC
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSS 176 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 176 (433)
++|... .+++++.+++++.+|++.|. ++++++||+++++
T Consensus 167 eIMt~~-~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g--------------------------------------- 206 (505)
T PLN02274 167 EVMTSD-DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDG--------------------------------------- 206 (505)
T ss_pred HHhccC-CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC---------------------------------------
Confidence 999753 34889999999999999999 7899999986432
Q ss_pred CCcCCCCCeEEEeeHHHHHHHHH
Q 013939 177 SSTTSVRDKFCCLSREDVIRFLI 199 (433)
Q Consensus 177 ~~~~~~~~~~~iiTq~Dvi~~l~ 199 (433)
+++|+||+.|+++++.
T Consensus 207 -------~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 207 -------ELVDLVTRTDVKRVKG 222 (505)
T ss_pred -------eEEEEEEHHHHHHHhh
Confidence 4689999999999884
No 154
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.03 E-value=3.6e-09 Score=86.27 Aligned_cols=95 Identities=29% Similarity=0.438 Sum_probs=77.4
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
+++++++++++.++++.|.+++...+||++.. ++++|+++..|++.++....... ...+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------~~~~G~v~~~~l~~~~~~~~~~~------~~~~~~ 62 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-------------GRLVGIVTERDLLRALAEGGLDP------LVTVGD 62 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-------------CCEEEEEeHHHHHHHHHhccCCc------cccHHH
Confidence 46889999999999999999999999999863 79999999999999875421100 112667
Q ss_pred ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
+|... ++.+.+++++.+++..|. .+.+.++|.++
T Consensus 63 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 97 (113)
T cd02205 63 VMTRD---VVTVSPDTSLEEAAELMLEHGIRRLPVVDD 97 (113)
T ss_pred HhcCC---ceecCCCcCHHHHHHHHHHcCCCEEEEEcC
Confidence 77654 888999999999999999 67888988754
No 155
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.02 E-value=2.1e-09 Score=88.87 Aligned_cols=91 Identities=26% Similarity=0.393 Sum_probs=74.5
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
++.+++++++++.+|++.|.+++..++||+|.. ++++|+++..|++... ..+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------~~~~G~v~~~~l~~~~-----------~~~~~v~ 57 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDD-------------GKLVGIVTNRDLRFET-----------DLDKPVS 57 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-------------CEEEEEEEhhHeeecc-----------cCCCCHH
Confidence 456889999999999999999999999999863 7999999999996421 1246788
Q ss_pred hccccCCCccEEeCC-CCcHHHHHHHHH-cCCCeEEeeec
Q 013939 98 QVIVPNNSLLKQVDP-GTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~-~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
++|... +..+.+ ++++.++++.|. .+.+++||.++
T Consensus 58 ~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~ 94 (110)
T cd04601 58 EVMTPE---NLLTTVEGTSLEEALELLHEHKIEKLPVVDD 94 (110)
T ss_pred HhcccC---ceEEecCCCCHHHHHHHHHHhCCCeeeEEcC
Confidence 998643 565666 999999999999 78888988754
No 156
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.02 E-value=8.8e-10 Score=107.54 Aligned_cols=107 Identities=14% Similarity=0.216 Sum_probs=87.4
Q ss_pred CcCCC-eEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccC
Q 013939 218 VINPN-YSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDN 295 (433)
Q Consensus 218 im~~~-vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~ 295 (433)
+|.++ ++++.+++++.+|++.|.+ ++..+||+|+ +| +++|+++..|+++.. .. +.
T Consensus 160 im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~--~g--~~~Givt~~dl~~~~--------~~-----------~~ 216 (268)
T TIGR00393 160 LMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE--NN--QLVGVFTDGDLRRAL--------LG-----------GG 216 (268)
T ss_pred HhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC--CC--CEEEEEEcHHHHHHH--------hc-----------CC
Confidence 68888 9999999999999999988 8999999998 78 999999999997642 00 00
Q ss_pred CCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHH
Q 013939 296 VTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVM 375 (433)
Q Consensus 296 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~ 375 (433)
.+ . ..+ + ..+..++.+|.+++++.+|+
T Consensus 217 -~~---------------~---------------~~v------~----------------~im~~~~~~v~~~~~l~~a~ 243 (268)
T TIGR00393 217 -SL---------------K---------------SEV------R----------------DFMTLGPKTFKLDALLLEAL 243 (268)
T ss_pred -cc---------------c---------------CcH------H----------------HhCCCCCeEECCCCcHHHHH
Confidence 00 0 000 0 22567889999999999999
Q ss_pred HHHHHcCCCEEEEEeCCCCCeEEEEEe
Q 013939 376 AQMLSHRATHVWVTEDESDDVLVGVVG 402 (433)
Q Consensus 376 ~~m~~~~vhrl~VVD~~~~~~lvGIVs 402 (433)
.+|.+++++++||+|++ |+++|+|+
T Consensus 244 ~~m~~~~~~~lpVvd~~--g~l~GvI~ 268 (268)
T TIGR00393 244 EFLERRKITSLVVVDDH--NKVLGVLH 268 (268)
T ss_pred HHHHHcCCcEEEEECCC--CeEEEEEC
Confidence 99999999999999987 89999985
No 157
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.02 E-value=2.2e-09 Score=94.72 Aligned_cols=107 Identities=26% Similarity=0.279 Sum_probs=81.1
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH--Hhhc---
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ--DKAM--- 92 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~--~~~l--- 92 (433)
++++++++++++.+|++.|.++++.++||+|+. ++++|++|..|+++++......... ...+
T Consensus 1 ~~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-------------g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~ 67 (133)
T cd04592 1 TKYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-------------DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTN 67 (133)
T ss_pred CCceEECCCCCHHHHHHHHHHcCCCEEEEECCC-------------CeEEEEEEHHHHHHHHhhccccccccchhhcccc
Confidence 357899999999999999999999999999964 7999999999999988643111100 0001
Q ss_pred CCcchhccccC------CCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCc
Q 013939 93 KTPVSQVIVPN------NSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVV 137 (433)
Q Consensus 93 ~~pV~~Im~~~------~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~ 137 (433)
...+.++|... ..+++++.+++++.+|++.|. ++++++||.+++.
T Consensus 68 ~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 68 TCLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred cccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 12344555310 134899999999999999999 7899999987654
No 158
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.01 E-value=6e-09 Score=87.79 Aligned_cols=101 Identities=20% Similarity=0.289 Sum_probs=79.4
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHH---hhcCCc
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQD---KAMKTP 95 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~---~~l~~p 95 (433)
++.++++++++.+|++.|.+++...+||+|.+ ++++|+++..|++............. ..-..+
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-------------GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMP 68 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-------------CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcC
Confidence 56889999999999999999999999999963 79999999999987653210000000 112367
Q ss_pred chhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 96 VSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 96 V~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
+.++|... ++++++++++.++++.|. .+.+.+||.++
T Consensus 69 v~~~~~~~---~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~ 106 (121)
T cd04584 69 VKEIMTKD---VITVHPLDTVEEAALLMREHRIGCLPVVED 106 (121)
T ss_pred HHHHhhCC---CeEECCCCcHHHHHHHHHHcCCCeEEEeeC
Confidence 88999754 899999999999999998 67888988754
No 159
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.01 E-value=1.3e-09 Score=109.21 Aligned_cols=112 Identities=15% Similarity=0.212 Sum_probs=94.8
Q ss_pred CcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhcccc
Q 013939 218 VIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVED 294 (433)
Q Consensus 218 im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~ 294 (433)
+|+ .+...+..++++.+-.++-.+ ++++.||||. .. +++|++|.+|+......
T Consensus 193 i~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~--~~--kvvGvVt~rDv~~~~~~-------------------- 248 (432)
T COG4109 193 IMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR--SM--KVVGVVTMRDVLDKKPS-------------------- 248 (432)
T ss_pred hccccccceeccccccHHHHHHHHHHcCCCccceecc--cc--eEEEEEEehhhhcCCCC--------------------
Confidence 566 357778888999988888888 9999999998 67 99999999998754300
Q ss_pred CCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHH
Q 013939 295 NVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAV 374 (433)
Q Consensus 295 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v 374 (433)
. ++ + -.|++.|+|+++.+|+..+
T Consensus 249 ------------------t-----------------~i------e----------------KVMtknp~tv~~~tsVAsv 271 (432)
T COG4109 249 ------------------T-----------------TI------E----------------KVMTKNPITVRAKTSVASV 271 (432)
T ss_pred ------------------c-----------------cH------H----------------HHhccCCeeecccchHHHH
Confidence 0 01 0 1279999999999999999
Q ss_pred HHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 375 MAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 375 ~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
.++|+-.++.-+||||++ .+++||||+.|+|+++-.
T Consensus 272 aq~MiwE~iem~PVv~~n--~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 272 AQMMIWEGIEMLPVVDSN--NTLLGIITRQDVLKSLQM 307 (432)
T ss_pred HHHHHhccceeeeEEcCC--ceEEEEEEHHHHHHHHHH
Confidence 999999999999999998 999999999999999865
No 160
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.01 E-value=1.2e-09 Score=114.71 Aligned_cols=121 Identities=12% Similarity=0.141 Sum_probs=92.4
Q ss_pred CCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccch
Q 013939 208 LPLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAG 286 (433)
Q Consensus 208 l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~ 286 (433)
+...++++ +|.+++.++.+++++.+|++.|.+ +++.+||+|+ +| +++|+||.+|+++....
T Consensus 332 l~~~~v~~--im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~--~~--~~~Givt~~dl~~~~~~------------ 393 (454)
T TIGR01137 332 LKNATVKD--LHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE--AG--KVLGSVTLRELLSALFA------------ 393 (454)
T ss_pred hccCCHHH--hCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC--CC--eEEEEEEHHHHHHHHhc------------
Confidence 33445555 688999999999999999999988 8899999997 78 99999999999764200
Q ss_pred hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939 287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK 366 (433)
Q Consensus 287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 366 (433)
+. ...+ ..+ . ..|..++.++.
T Consensus 394 -------~~-----------------~~~~-------------~~v------~----------------~im~~~~~~v~ 414 (454)
T TIGR01137 394 -------GK-----------------ANPD-------------DAV------S----------------KVMSKKFIQIG 414 (454)
T ss_pred -------cC-----------------CCcC-------------CCH------H----------------HhcCCCCeEEC
Confidence 00 0000 000 0 22466788999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHH
Q 013939 367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAV 410 (433)
Q Consensus 367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i 410 (433)
+++++.+++.+|.+++ .+||+++ ++++||||+.||+++|
T Consensus 415 ~~~~l~~a~~~~~~~~---~~vV~~~--g~liGvvt~~dll~~l 453 (454)
T TIGR01137 415 EGEKLSDLSKFLEKNS---SAIVTEE--GKPIGVVTKIDLLSFL 453 (454)
T ss_pred CcCcHHHHHHHHHHCC---eeEEEEC--CEEEEEEEHHHHHHhh
Confidence 9999999999998764 4666666 8999999999999986
No 161
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.00 E-value=3.8e-09 Score=88.96 Aligned_cols=112 Identities=13% Similarity=0.183 Sum_probs=84.8
Q ss_pred CeEEEcCCCcHHHHHHhccc-C-CCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-D-PSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~-isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
++.++.+++++.+|++.|.+ + +..+||+|+ | +++|+++..|+..+... .+. .++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~---~--~~~G~v~~~~l~~~~~~--~~~------~~~~~--------- 59 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD---G--RPVGLIMREALMELLST--PYG------RALYG--------- 59 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC---C--eeEEEEEHHHHHHHHhc--hhh------HHHHc---------
Confidence 46788999999999999987 6 889999994 6 99999999999764310 000 00000
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML 379 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~ 379 (433)
.. .+ + ..+..++++|.+++++.+++..|.
T Consensus 60 -------------~~----------------~v-----------------~-----~~~~~~~~~v~~~~~~~~~~~~~~ 88 (119)
T cd04598 60 -------------KK----------------PV-----------------S-----EVMDPDPLIVEADTPLEEVSRLAT 88 (119)
T ss_pred -------------CC----------------cH-----------------H-----HhcCCCcEEecCCCCHHHHHHHHH
Confidence 00 00 0 225678999999999999999999
Q ss_pred HcCCCEE---EEEeCCCCCeEEEEEeHHHHHH
Q 013939 380 SHRATHV---WVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 380 ~~~vhrl---~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
+++.+++ +||+++ |+++|+||..|+++
T Consensus 89 ~~~~~~~~~~~vv~~~--~~~~Gvvs~~di~~ 118 (119)
T cd04598 89 GRDSQNLYDGFIVTEE--GRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcccccccEEEeeC--CeEEEEEEHHHHhc
Confidence 9987544 688887 99999999999986
No 162
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.99 E-value=2.9e-09 Score=88.70 Aligned_cols=85 Identities=19% Similarity=0.226 Sum_probs=71.2
Q ss_pred EcCCccHHHHHHHHHhcC-----CCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 23 FYETETVEAAIKAIGEST-----ECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 23 v~~~~tV~eAl~~L~e~~-----I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
+++++++.+|++.|.+++ +..+||+|.+ ++++|+|+..|++.. . .+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-------------~~~~G~v~~~~l~~~---~---------~~~~v~ 56 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-------------GRLLGVVSLRDLLLA---D---------PDTPVS 56 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC-------------CCEEEEEEHHHHhcC---C---------CcchHH
Confidence 578999999999999888 5789999863 789999999999752 1 135788
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
++|... ++++.+++++.++++.|. ++.+.+||.++
T Consensus 57 ~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~ 92 (109)
T cd04606 57 DIMDTD---VISVSADDDQEEVARLFEKYDLLALPVVDE 92 (109)
T ss_pred HHhCCC---CeEEcCCCCHHHHHHHHHHcCCceeeeECC
Confidence 888754 899999999999999999 78888988754
No 163
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.99 E-value=5.9e-09 Score=85.93 Aligned_cols=89 Identities=25% Similarity=0.387 Sum_probs=75.6
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
+++++++.+.++.+|++.|.+++...+||+|. ++++|+++..|++.. . .+.+++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--------------~~~~g~v~~~~l~~~---~---------~~~~~~ 55 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--------------GKVVGIVSARDLLGK---D---------PDETVE 55 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--------------CEEEEEEEHHHhhcc---C---------ccccHH
Confidence 56789999999999999999999999999984 689999999999752 1 135688
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
++|... ++.+.+++++.++++.|. ++.+++||.++
T Consensus 56 ~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 91 (107)
T cd04610 56 EIMSKD---LVVAVPEMDIMDAARVMFRTGISKLPVVDE 91 (107)
T ss_pred HhCCCC---CeEECCCCCHHHHHHHHHHhCCCeEeEECC
Confidence 999754 888999999999999998 67889988754
No 164
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.99 E-value=4.1e-09 Score=87.01 Aligned_cols=107 Identities=20% Similarity=0.255 Sum_probs=85.4
Q ss_pred ccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCCCCCCCcCCCCC
Q 013939 106 LLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTTSVRD 184 (433)
Q Consensus 106 ~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (433)
+++++++++++.+|++.|. ++++++||.++ + +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~----------------------------------------------~ 34 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-G----------------------------------------------R 34 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-C----------------------------------------------e
Confidence 5788999999999999998 68889988764 2 3
Q ss_pred eEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhcccCCCeeEEecCCCCCcceEEeecc
Q 013939 185 KFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPGDPSAIAVLEPTSEDQYKIIGEIS 264 (433)
Q Consensus 185 ~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~~isavpVVd~~~~g~~klvGiIS 264 (433)
.+|++|+.|+.+++.+.... ...++.+ +|.++++++.+++++.+++++|.+ ...+|||++ +| +++|+||
T Consensus 35 ~~G~v~~~dl~~~~~~~~~~----~~~~~~~--~~~~~~~~v~~~~~l~~~~~~~~~-~~~~~vv~~--~~--~~~Gvvt 103 (110)
T cd04609 35 VVGSIDESDLLDALIEGKAK----FSLPVRE--VMGEPLPTVDPDAPIEELSELLDR-GNVAVVVDE--GG--KFVGIIT 103 (110)
T ss_pred eEEEEeHHHHHHHHhccccc----cCcCHHH--HhcCCCceeCCCCcHHHHHHHHHh-CCceeEEec--CC--eEEEEEe
Confidence 57999999999987532111 1234444 577789999999999999999988 335899987 78 9999999
Q ss_pred hhhhhh
Q 013939 265 ASKLWK 270 (433)
Q Consensus 265 ~~DL~~ 270 (433)
.+|+..
T Consensus 104 ~~di~~ 109 (110)
T cd04609 104 RADLLK 109 (110)
T ss_pred HHHhhc
Confidence 999875
No 165
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.98 E-value=3.7e-09 Score=103.19 Aligned_cols=104 Identities=20% Similarity=0.259 Sum_probs=88.3
Q ss_pred hhHhhhhcCCCC-eEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcc
Q 013939 8 HVVGDLTVGKPE-LAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLE 86 (433)
Q Consensus 8 ~~v~DL~~~k~~-lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~ 86 (433)
.+|+|+|. ++ +.++++++++.+|++.|.++++..+||+|.+ ++++|+|+..|+.+.+...
T Consensus 155 ~~v~~im~--~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-------------g~~~Givt~~dl~~~~~~~---- 215 (268)
T TIGR00393 155 VKVKDLMQ--TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-------------NQLVGVFTDGDLRRALLGG---- 215 (268)
T ss_pred hhHHHHhC--CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-------------CCEEEEEEcHHHHHHHhcC----
Confidence 46889885 44 8899999999999999999999999999863 7999999999999865432
Q ss_pred hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939 87 DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV 136 (433)
Q Consensus 87 ~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~ 136 (433)
...+.||+++|... ++++.+++++.+|++.|. .+++++||.+++
T Consensus 216 ---~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 260 (268)
T TIGR00393 216 ---GSLKSEVRDFMTLG---PKTFKLDALLLEALEFLERRKITSLVVVDDH 260 (268)
T ss_pred ---CcccCcHHHhCCCC---CeEECCCCcHHHHHHHHHHcCCcEEEEECCC
Confidence 12357899999865 889999999999999999 789999998643
No 166
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.98 E-value=1.8e-09 Score=95.20 Aligned_cols=116 Identities=14% Similarity=0.143 Sum_probs=77.1
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++++.+++++.+|++.|.+ +++.+||||+ +| +++|++|..||++..... + .......+..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~--~g--~l~Givt~~Dl~~~~~~~--~-~~~~~~~~~~----------- 63 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS--DD--FLEGILTLGDIQRFLFTN--K-TTRVQPEDET----------- 63 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC--CC--eEEEEEEHHHHHHHHhhc--c-ccccccchhh-----------
Confidence 57899999999999999998 8899999998 78 999999999998753100 0 0000000000
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
+..+... .. .+ +-.+..++.|..+++++++++++.+|++.|.+
T Consensus 64 ---------~~~~~~~-------v~-----~i----------------~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~ 106 (133)
T cd04592 64 ---------KQTNTCL-------VS-----SV----------------CTKGISYGGQECGLWTCTPDTDLTTAKKLMEA 106 (133)
T ss_pred ---------ccccccc-------HH-----HH----------------hhhhhhhcccCCCCEEECCCCCHHHHHHHHHH
Confidence 0000000 00 00 00000001135789999999999999999999
Q ss_pred cCCCEEEEEeCC
Q 013939 381 HRATHVWVTEDE 392 (433)
Q Consensus 381 ~~vhrl~VVD~~ 392 (433)
++++++||+|+.
T Consensus 107 ~~~~~lPVvd~~ 118 (133)
T cd04592 107 KGVKQLPVVKRG 118 (133)
T ss_pred cCCCcCCEecCC
Confidence 999999999975
No 167
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.98 E-value=7.6e-09 Score=86.63 Aligned_cols=87 Identities=28% Similarity=0.377 Sum_probs=73.2
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
+.+.++++++++.++.+.|.+++...+||+|... ..++++|+++..|+.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~----------~~~~~~G~v~~~dl~~~~~~---------------- 55 (105)
T cd04591 2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTE----------ESPRLVGYILRSQLVVALKN---------------- 55 (105)
T ss_pred CceEEecccccHHHHHHHHHhCCCCCcceEcCCC----------CCCEEEEEEeHHHHHHHHHH----------------
Confidence 4578899999999999999999999999998620 01689999999999876421
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeee
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPK 134 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~ 134 (433)
+|..+ +.++++++++.++++.|. ++.+.+||..
T Consensus 56 -~m~~~---~~~v~~~~~l~~~~~~~~~~~~~~~pVv~ 89 (105)
T cd04591 56 -YIDPS---PFTVSPRTSLEKVHQLFRKLGLRHLLVVD 89 (105)
T ss_pred -hccCC---CceECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence 67644 889999999999999998 7899999974
No 168
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.97 E-value=3.8e-09 Score=111.51 Aligned_cols=96 Identities=23% Similarity=0.323 Sum_probs=80.3
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
++++++++++|+.+|+++|.+++++++||+|.+.+ .++++|+|+.+|++... . .+.+++
T Consensus 88 ~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~----------~~~lvGIVt~rDL~~~~--~---------~~~~V~ 146 (450)
T TIGR01302 88 SDPVTISPETTVADVLELMERKGISGIPVVEDGDM----------TGKLVGIITKRDIRFVK--D---------KGKPVS 146 (450)
T ss_pred cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCC----------CCeEEEEEEHHHHhhhh--c---------CCCCHH
Confidence 57899999999999999999999999999986310 15999999999996421 1 246899
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV 136 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~ 136 (433)
++|.. .+++++.+++++.++++.|. ++.+.+||+++.
T Consensus 147 dvm~~--~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~ 184 (450)
T TIGR01302 147 EVMTR--EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKN 184 (450)
T ss_pred HhhCC--CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCC
Confidence 99983 14999999999999999999 789999998653
No 169
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.96 E-value=1e-08 Score=90.54 Aligned_cols=101 Identities=25% Similarity=0.376 Sum_probs=79.8
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC---Ccc--------
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD---CLE-------- 86 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~---~l~-------- 86 (433)
++++++++++++.+|++.|.++++.++||+|. ++++|+++..|+++++.... ...
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--------------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~ 66 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDG--------------GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELI 66 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC--------------CeEEEEecHHHHHHHHHhccCccccccCCcceee
Confidence 45789999999999999999999999999984 58999999999998775321 000
Q ss_pred ---------------hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 87 ---------------DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 87 ---------------~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
...+....++.++|... +.++.+++++.+++..|. .+.+++||.++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~ 128 (143)
T cd04634 67 ELPLREFINWEETKRALTDAGKMKVRDIMTKK---VITISPDASIEDAAELMVRHKIKRLPVVED 128 (143)
T ss_pred eccchheeehHHHHHHHHHHhcCCHHHHcCCC---CeEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence 00011245678888654 899999999999999998 67889999764
No 170
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.94 E-value=1.2e-08 Score=84.57 Aligned_cols=84 Identities=21% Similarity=0.182 Sum_probs=72.6
Q ss_pred EEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchhcc
Q 013939 21 AEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVI 100 (433)
Q Consensus 21 Vtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~Im 100 (433)
+++++++++.+|++.|.++++..+||+|. ++++|+++..|+.+.. ..++.++|
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~G~v~~~~l~~~~-------------~~~~~~~~ 56 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--------------NKFLGAVYLKDIENAT-------------YGDVVDYI 56 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC--------------CEEEEEEEHHHHhhhc-------------ccchhhhh
Confidence 67899999999999999999999999984 5899999999997631 13577788
Q ss_pred ccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeee
Q 013939 101 VPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPK 134 (433)
Q Consensus 101 ~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~ 134 (433)
... .++++++.++.++++.|. ++.+++||++
T Consensus 57 ~~~---~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~ 88 (104)
T cd04594 57 VRG---IPYVRLTSTAEEAWEVMMKNKTRWCPVVD 88 (104)
T ss_pred hcC---CcEEcCCCCHHHHHHHHHHcCcceEEEEE
Confidence 644 789999999999999999 7889999975
No 171
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.93 E-value=3.9e-09 Score=78.72 Aligned_cols=52 Identities=23% Similarity=0.372 Sum_probs=49.7
Q ss_pred CCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHH
Q 013939 358 GRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVT 411 (433)
Q Consensus 358 ~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~ 411 (433)
|.++++++++++++.++++.|.+++++++||+|++ |+++|+||++||++++.
T Consensus 5 m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~--~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 5 MTPPPITVSPDDSLEEALEIMRKNGISRLPVVDED--GKLVGIISRSDLLKALL 56 (57)
T ss_dssp SBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT--SBEEEEEEHHHHHHHHH
T ss_pred CcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC--CEEEEEEEHHHHHhhhh
Confidence 57799999999999999999999999999999998 99999999999999875
No 172
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.91 E-value=7.3e-09 Score=110.48 Aligned_cols=97 Identities=21% Similarity=0.201 Sum_probs=80.6
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
++++++++++|+.+|+++|.+++++.+||+|.+.. +++++|+|+..|+... . ..+.+|+
T Consensus 104 ~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~----------~gkLvGIVt~~DL~~~--~---------~~~~~V~ 162 (495)
T PTZ00314 104 MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKV----------GGKLLGIVTSRDIDFV--K---------DKSTPVS 162 (495)
T ss_pred cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCcc----------CCeEEEEEEHHHHhhc--c---------cCCCCHH
Confidence 56799999999999999999999999999986310 2799999999999621 1 1247899
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV 136 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~ 136 (433)
++|... .+++++.+++++.||+++|. ++++.+||++++
T Consensus 163 diMt~~-~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~ 201 (495)
T PTZ00314 163 EVMTPR-EKLVVGNTPISLEEANEVLRESRKGKLPIVNDN 201 (495)
T ss_pred HhhCCc-CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCC
Confidence 999851 24999999999999999999 789999998653
No 173
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.83 E-value=5e-08 Score=82.08 Aligned_cols=90 Identities=18% Similarity=0.220 Sum_probs=71.8
Q ss_pred CeEEEcCCccHHHHHHHHHhcC-CCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 19 ELAEFYETETVEAAIKAIGEST-ECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~-I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
++.++++++++.+|++.|.+++ +..+||+|. ++++|+++..|++.++..... .....+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--------------~~~~G~v~~~~l~~~~~~~~~---~~~~~~~~v~ 64 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--------------GRPVGLIMREALMELLSTPYG---RALYGKKPVS 64 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--------------CeeEEEEEHHHHHHHHhchhh---HHHHcCCcHH
Confidence 4567899999999999999887 899999995 589999999999876543100 0111246799
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCC
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVR 128 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~ 128 (433)
++|... ++.+.+++++.+++..|. ++.+
T Consensus 65 ~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~ 93 (119)
T cd04598 65 EVMDPD---PLIVEADTPLEEVSRLATGRDSQ 93 (119)
T ss_pred HhcCCC---cEEecCCCCHHHHHHHHHcCCcc
Confidence 999764 999999999999999998 5654
No 174
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.82 E-value=1.5e-08 Score=75.57 Aligned_cols=56 Identities=23% Similarity=0.440 Sum_probs=51.5
Q ss_pred HhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhh
Q 013939 10 VGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLA 80 (433)
Q Consensus 10 v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~ 80 (433)
|+|+|. ++++++++++++.+|++.|.+++++++||+|++ ++++|++|..||++++.
T Consensus 1 v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-------------~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMT--PPPITVSPDDSLEEALEIMRKNGISRLPVVDED-------------GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSB--SSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-------------SBEEEEEEHHHHHHHHH
T ss_pred CeECCc--CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-------------CEEEEEEEHHHHHhhhh
Confidence 578886 589999999999999999999999999999864 89999999999999875
No 175
>PRK11573 hypothetical protein; Provisional
Probab=98.80 E-value=1.3e-07 Score=98.83 Aligned_cols=167 Identities=13% Similarity=0.158 Sum_probs=117.4
Q ss_pred cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939 4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83 (433)
Q Consensus 4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~ 83 (433)
.|...+|+|+|.-..++++++.+++++++++.+.+.+.+++||++.. .+.++|++...|++.++.+..
T Consensus 183 ~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~------------~D~IiGiv~~kDll~~~~~~~ 250 (413)
T PRK11573 183 DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS------------LDDAISMLRVREAYRLMTEKK 250 (413)
T ss_pred ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC------------CCceEEEEEHHHHHHHhhccC
Confidence 57788999999877899999999999999999999999999999854 378999999999998654321
Q ss_pred CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHHcCCCeEEeeecCcccccccchhhhccccccccccccCcc
Q 013939 84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSS 163 (433)
Q Consensus 84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 163 (433)
... ...+.++|. ++..|+++.++.++++.|.++-.++.++.|.-
T Consensus 251 ~~~------~~~l~~~~r----~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEy-------------------------- 294 (413)
T PRK11573 251 EFT------KENMLRAAD----EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY-------------------------- 294 (413)
T ss_pred cCC------HHHHHhhcc----CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecC--------------------------
Confidence 110 012334443 47889999999999999995444455443321
Q ss_pred ccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccC-CCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhcc
Q 013939 164 SNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLG-ALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAP 240 (433)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~-~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~ 240 (433)
|...||||.+||+.-+.+.+. +........+.. .....+.++...++.|.-+.+.
T Consensus 295 -------------------G~~~GiVTleDilEeivGei~de~d~~~~~~i~~---~~~~~~~v~G~~~l~d~~~~l~ 350 (413)
T PRK11573 295 -------------------GDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTP---QNDGSVIIDGTANVREINKAFN 350 (413)
T ss_pred -------------------CCeEEEeeHHHHHHHHhCCCCcccCcccccceEE---ecCCEEEEEeeeEHHHHHHHhC
Confidence 234799999999998864321 111100111211 1234667777788877777664
No 176
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.77 E-value=1.1e-07 Score=78.61 Aligned_cols=89 Identities=20% Similarity=0.336 Sum_probs=74.7
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
+++++.+++++.+|++.|.+++++.+||++.+ ++++|+++..|++.. .. +.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------~~~~g~v~~~~l~~~--~~----------~~~~~~ 56 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-------------GELVGIITRKDLLRN--PE----------EEQLAL 56 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-------------CcEEEEEEHHHHHhc--cc----------cchHHH
Confidence 57899999999999999999999999999863 789999999999752 10 135677
Q ss_pred ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
+|... ..++.+++++.++++.|. ++.+.+||.++
T Consensus 57 ~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~ 91 (106)
T cd04638 57 LMTRD---PPTVSPDDDVKEAAKLMVENNIRRVPVVDD 91 (106)
T ss_pred HhcCC---CceECCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 77644 888999999999999999 78889999763
No 177
>PRK11573 hypothetical protein; Provisional
Probab=98.69 E-value=1.3e-07 Score=98.88 Aligned_cols=129 Identities=11% Similarity=0.125 Sum_probs=102.8
Q ss_pred CCCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhcc
Q 013939 208 LPLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLS 284 (433)
Q Consensus 208 l~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~ 284 (433)
+..+++++ +|++ ++++++.++++.++++++.+ +++++||.+++ .+ .++|++..+|+......
T Consensus 184 l~~~~v~e--iMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~-~D--~IiGiv~~kDll~~~~~---------- 248 (413)
T PRK11573 184 LEKVTVDD--IMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS-LD--DAISMLRVREAYRLMTE---------- 248 (413)
T ss_pred cCCCChhh--cCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC-CC--ceEEEEEHHHHHHHhhc----------
Confidence 45667776 6885 79999999999999999999 99999999862 24 89999999999753200
Q ss_pred chhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeE
Q 013939 285 AGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLT 364 (433)
Q Consensus 285 ~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 364 (433)
+ +... . .++ ....++++.
T Consensus 249 -----------~----------------~~~~-------~-----~~l-----------------------~~~~r~~~~ 266 (413)
T PRK11573 249 -----------K----------------KEFT-------K-----ENM-----------------------LRAADEIYF 266 (413)
T ss_pred -----------c----------------CcCC-------H-----HHH-----------------------HhhccCCeE
Confidence 0 0000 0 000 012458899
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 365 CKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 365 ~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
+.++.++.+++..|.+++.|-.-|||+- |..+||||+.||+..+..+-.
T Consensus 267 Vpe~~~l~~lL~~~~~~~~~~AiVvDEy--G~~~GiVTleDilEeivGei~ 315 (413)
T PRK11573 267 VPEGTPLSTQLVKFQRNKKKVGLVVDEY--GDIQGLVTVEDILEEIVGDFT 315 (413)
T ss_pred eCCCCcHHHHHHHHHhcCCeEEEEEecC--CCeEEEeeHHHHHHHHhCCCC
Confidence 9999999999999999999999999998 999999999999999998654
No 178
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.57 E-value=4.3e-07 Score=91.32 Aligned_cols=118 Identities=23% Similarity=0.307 Sum_probs=100.9
Q ss_pred hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939 9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ 88 (433)
Q Consensus 9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~ 88 (433)
+|.|++.--.+...+.++++|++=.++-.+.+.++-||+|.. .+++|+|+++|++..
T Consensus 189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~-------------~kvvGvVt~rDv~~~---------- 245 (432)
T COG4109 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRS-------------MKVVGVVTMRDVLDK---------- 245 (432)
T ss_pred eHHHhccccccceeccccccHHHHHHHHHHcCCCccceeccc-------------ceEEEEEEehhhhcC----------
Confidence 356666533456889999999999999999999999999974 799999999999753
Q ss_pred HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccccc
Q 013939 89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNL 167 (433)
Q Consensus 89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 167 (433)
.-++++..+|+++ ++++.+.+|+..+...|. .|+.=+||++++.
T Consensus 246 --~~~t~ieKVMtkn---p~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~------------------------------ 290 (432)
T COG4109 246 --KPSTTIEKVMTKN---PITVRAKTSVASVAQMMIWEGIEMLPVVDSNN------------------------------ 290 (432)
T ss_pred --CCCccHHHHhccC---CeeecccchHHHHHHHHHhccceeeeEEcCCc------------------------------
Confidence 1258899999987 999999999999999999 7999999987643
Q ss_pred ccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 168 IANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
.++||||+.|+++-+..
T Consensus 291 ----------------~llGiitR~dvlk~lq~ 307 (432)
T COG4109 291 ----------------TLLGIITRQDVLKSLQM 307 (432)
T ss_pred ----------------eEEEEEEHHHHHHHHHH
Confidence 45899999999998854
No 179
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.57 E-value=3.8e-07 Score=96.02 Aligned_cols=121 Identities=13% Similarity=0.183 Sum_probs=100.5
Q ss_pred CCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc------CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHh
Q 013939 208 LPLSSISSLGVINPNYSSIEASVPAIEATLKAPG------DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALA 281 (433)
Q Consensus 208 l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~------~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~ 281 (433)
.+..+.+. +|+...+++.++.|+.+|+..+++ .+..+-|||. ++ |++|.+|-++|..-....
T Consensus 129 y~e~taG~--~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~--~~--~L~Gvvsl~~Ll~a~~~~------ 196 (451)
T COG2239 129 YPEDTAGR--IMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE--KG--KLLGVVSLRDLLTAEPDE------ 196 (451)
T ss_pred CChhhhhc--cceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC--cc--ceEEEeeHHHHhcCCcHh------
Confidence 34455665 699999999999999999988883 5778999998 88 999999999997543100
Q ss_pred hccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCC
Q 013939 282 NLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRST 361 (433)
Q Consensus 282 ~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (433)
+- . ..|...
T Consensus 197 -------------------------------~i---------------~-------------------------~im~~~ 205 (451)
T COG2239 197 -------------------------------LL---------------K-------------------------DLMEDD 205 (451)
T ss_pred -------------------------------HH---------------H-------------------------HHhccc
Confidence 00 0 124667
Q ss_pred CeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 362 PLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 362 ~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
++++.++++.+++++.+-.++.-.+||||++ ++++|+||..||+..+..+
T Consensus 206 ~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~--~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 206 VVSVLADDDQEEVARLFEKYDLLAVPVVDED--NRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred ceeecccCCHHHHHHHHHHhCCeecceECCC--CceeeeeeHHHHHHHHHHH
Confidence 9999999999999999999999999999998 9999999999999998763
No 180
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.53 E-value=2.3e-06 Score=89.96 Aligned_cols=168 Identities=18% Similarity=0.140 Sum_probs=117.4
Q ss_pred cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939 4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83 (433)
Q Consensus 4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~ 83 (433)
.|-.+.|.++|.-..++++++.+.+++++.+.+.+.+.+++||++.. .+.++|++...|++.++.+..
T Consensus 202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~------------~D~iiGiv~~Kdll~~~~~~~ 269 (429)
T COG1253 202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD------------LDNIIGIVHVKDLLRALLDGQ 269 (429)
T ss_pred ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC------------CCcEEEEEEHHHHHHHHhcCc
Confidence 46678899999877899999999999999999999999999999943 479999999999999876542
Q ss_pred CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHHcCCCeEEeeecCcccccccchhhhccccccccccccCcc
Q 013939 84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSS 163 (433)
Q Consensus 84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 163 (433)
... -....+. +++.|++..++.++++.|.+.-.|+.++.|.-
T Consensus 270 ~~~--------~~~~~~~----~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy-------------------------- 311 (429)
T COG1253 270 SDL--------DLRVLVR----PPLFVPETLSLSDLLEEFREERTHMAIVVDEY-------------------------- 311 (429)
T ss_pred ccc--------chhhccc----CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC--------------------------
Confidence 100 0111111 48999999999999999995444455544321
Q ss_pred ccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccC-CCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhcccC
Q 013939 164 SNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLG-ALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPGD 242 (433)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~-~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~~ 242 (433)
|...|+||.+||+.-+.+... +........+- ...... ..+...+++.|..+.+.-.
T Consensus 312 -------------------G~~~GlVTleDIiEeIvGei~de~d~~~~~~~~--~~~~~~-~~v~G~~~l~e~~~~l~~~ 369 (429)
T COG1253 312 -------------------GGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDII--QRDDDG-WLVDGRVPLEELEELLGID 369 (429)
T ss_pred -------------------CCeEEEeEHHHHHHHHhCCCcCcccccccccce--EecCCc-EEEeccccHHHHHHHhCCC
Confidence 245899999999998864221 11110011111 112233 6677778887777776643
Q ss_pred C
Q 013939 243 P 243 (433)
Q Consensus 243 i 243 (433)
.
T Consensus 370 ~ 370 (429)
T COG1253 370 L 370 (429)
T ss_pred C
Confidence 3
No 181
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.47 E-value=1.3e-06 Score=91.70 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=102.9
Q ss_pred CCCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhcc
Q 013939 208 LPLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLS 284 (433)
Q Consensus 208 l~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~ 284 (433)
+..+++++ +|++ +++++..+.++.++.+.+.+ ++|++||.+++ .+ .++|++..+||......
T Consensus 203 l~~~~v~e--iMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~-~D--~iiGiv~~Kdll~~~~~---------- 267 (429)
T COG1253 203 LDDRTVRE--IMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD-LD--NIIGIVHVKDLLRALLD---------- 267 (429)
T ss_pred cCCcEeee--EeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC-CC--cEEEEEEHHHHHHHHhc----------
Confidence 55677776 6885 79999999999999999988 99999999942 44 99999999999865310
Q ss_pred chhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeE
Q 013939 285 AGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLT 364 (433)
Q Consensus 285 ~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 364 (433)
+ +. .. .. ...-.+++.
T Consensus 268 ---------~------------------~~-~~-------------~~-----------------------~~~~~~~~~ 283 (429)
T COG1253 268 ---------G------------------QS-DL-------------DL-----------------------RVLVRPPLF 283 (429)
T ss_pred ---------C------------------cc-cc-------------ch-----------------------hhcccCCeE
Confidence 0 00 00 00 001228999
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 365 CKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 365 ~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
+.+..++.+++++|.+++.|---|+|+- |...|+||+.||+..+...-+
T Consensus 284 Vpet~~~~~lL~~~r~~~~hmAiVvDEy--G~~~GlVTleDIiEeIvGei~ 332 (429)
T COG1253 284 VPETLSLSDLLEEFREERTHMAIVVDEY--GGVEGLVTLEDIIEEIVGEIP 332 (429)
T ss_pred ecCCCcHHHHHHHHHHhCCeEEEEEEcC--CCeEEEeEHHHHHHHHhCCCc
Confidence 9999999999999999999999999998 999999999999999998654
No 182
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.37 E-value=3.2e-06 Score=87.14 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=89.9
Q ss_pred CCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCC
Q 013939 220 NPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTP 298 (433)
Q Consensus 220 ~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~ 298 (433)
....+...++.+..++++.|.. +...+.|+|+ ++ +++|.++..++..+. . .
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~g~~~~~~~~~~~-~-------------------~---- 300 (363)
T TIGR01186 249 NTGPITKTADKGPRSALQLMRDERVDSLYVVDR--QN--KLVGVVDVESIKQAR-K-------------------K---- 300 (363)
T ss_pred cccceeecCCCCHHHHHHHHHhcCCceEEEEcC--CC--CEEEEEeHHHHHHHh-h-------------------c----
Confidence 3445567788899999999998 8888999998 78 999999999886442 0 0
Q ss_pred CCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHH
Q 013939 299 RSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQM 378 (433)
Q Consensus 299 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m 378 (433)
.+ ++ + +.+.....++.++++|.+++.+|
T Consensus 301 --------------~~----------------~~------~----------------~~~~~~~~~~~~~~~~~~~~~~~ 328 (363)
T TIGR01186 301 --------------AQ----------------GL------Q----------------DVLIDDIYTVDAGTLLRETVRKV 328 (363)
T ss_pred --------------CC----------------ch------h----------------hhhccCCceECCCCcHHHHHHHH
Confidence 00 00 0 11244567899999999999999
Q ss_pred HHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 379 LSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 379 ~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
.+++.. +||||++ |+++|+||..+|++++..+-+
T Consensus 329 ~~~~~~-~~v~~~~--~~~~g~i~~~~~~~~~~~~~~ 362 (363)
T TIGR01186 329 LKAGIK-VPVVDED--QRLVGIVTRGSLVDALYDSRE 362 (363)
T ss_pred HhCCCC-EEEECCC--CcEEEEEEHHHHHHHHHhhcc
Confidence 999999 9999998 999999999999999987543
No 183
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.22 E-value=2.7e-06 Score=87.03 Aligned_cols=112 Identities=18% Similarity=0.169 Sum_probs=90.2
Q ss_pred CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939 222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300 (433)
Q Consensus 222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~ 300 (433)
+++.+.|+.++.++++.-.. .++++||.+++--|. ||||+||.+|+-.+. +
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~-KLvG~vtsrdi~f~~---------------------~------ 168 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGS-KLVGIITSRDIQFLE---------------------D------ 168 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccc-eeEEEEehhhhhhhh---------------------c------
Confidence 47788999999999988888 999999998521223 999999999985431 0
Q ss_pred CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS 380 (433)
Q Consensus 301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~ 380 (433)
.+. + ++ +.|+..+++...+.+|+++=+.|-+
T Consensus 169 ------------~~~----------------~-~~--------------------~vmt~~~~~~~~gi~l~~~neiL~~ 199 (503)
T KOG2550|consen 169 ------------NSL----------------L-VS--------------------DVMTKNPVTGAQGITLKEANEILKK 199 (503)
T ss_pred ------------ccc----------------h-hh--------------------hhcccccccccccccHHHHHHHHHh
Confidence 010 0 00 3367777999999999999999999
Q ss_pred cCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 381 HRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
++-.++||||++ |.||.||+++|+.+.---
T Consensus 200 ~kkGkl~iv~~~--gelva~~~rtDl~k~~~y 229 (503)
T KOG2550|consen 200 IKKGKLPVVDDK--GELVAMLSRTDLMKNRDY 229 (503)
T ss_pred hhcCCcceeccC--CceeeeeehhhhhhhcCC
Confidence 999999999998 999999999999887543
No 184
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.21 E-value=8.4e-06 Score=85.04 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=85.6
Q ss_pred EEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCCCC
Q 013939 225 SIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPD 303 (433)
Q Consensus 225 tv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~ 303 (433)
...++.+..+|++.|.. +...+.|+|+ ++ +++|.++..|+......
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~g~~~~~~~~~~~~~----------------------------- 335 (400)
T PRK10070 289 RKTPGFGPRSALKLLQDEDREYGYVIER--GN--KFVGAVSIDSLKTALTQ----------------------------- 335 (400)
T ss_pred ccCCCCCHHHHHHHHHhcCCceEEEEcC--CC--cEEEEEeHHHHHhhhhc-----------------------------
Confidence 34577789999999999 8999999998 88 99999999998643200
Q ss_pred cccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcCC
Q 013939 304 YSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRA 383 (433)
Q Consensus 304 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~v 383 (433)
.. .+ . ..+.....+++++++|.+++..|.++..
T Consensus 336 ---------~~----------------~~--~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (400)
T PRK10070 336 ---------QQ----------------GL--D--------------------AALIDAPLAVDAQTPLSELLSHVGQAPC 368 (400)
T ss_pred ---------CC----------------ch--h--------------------hhhccCCceeCCCCCHHHHHHHHHhCCC
Confidence 00 00 0 0123456789999999999999999776
Q ss_pred CEEEEEeCCCCCeEEEEEeHHHHHHHHHhCC
Q 013939 384 THVWVTEDESDDVLVGVVGYADILVAVTKQP 414 (433)
Q Consensus 384 hrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~ 414 (433)
. +||||++ |+++|+||..++++++....
T Consensus 369 ~-~~v~~~~--~~~~g~~~~~~~~~~~~~~~ 396 (400)
T PRK10070 369 A-VPVVDED--QQYVGIISKGMLLRALDREG 396 (400)
T ss_pred c-EEEECCC--CcEEEEEEHHHHHHHHHhcC
Confidence 6 9999998 99999999999999997654
No 185
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.17 E-value=6.2e-06 Score=56.99 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=44.1
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHH
Q 013939 361 TPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAV 410 (433)
Q Consensus 361 ~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i 410 (433)
++.++.+++++.+++..|.+++++++||++++ ++++|+++..|+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEE--GRLVGIVTRRDIIKAL 48 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECCC--CeEEEEEEHHHHHHhh
Confidence 35788999999999999999999999999987 8999999999998765
No 186
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.02 E-value=1.3e-05 Score=82.06 Aligned_cols=96 Identities=29% Similarity=0.279 Sum_probs=78.9
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
.+.+++.|+.|+.+++++-..+++..+||.+... .+.|++||||.+|+= |+ ++ -.++++
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~----------~~~KLvG~vtsrdi~-f~-~~---------~~~~~~ 174 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGK----------RGSKLVGIITSRDIQ-FL-ED---------NSLLVS 174 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCc----------ccceeEEEEehhhhh-hh-hc---------ccchhh
Confidence 4668999999999999999999999999987432 258999999999984 44 22 137899
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCc
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVV 137 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~ 137 (433)
++|+.. .++...+.+|.++=+++. +.-+++||+++.+
T Consensus 175 ~vmt~~---~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~g 212 (503)
T KOG2550|consen 175 DVMTKN---PVTGAQGITLKEANEILKKIKKGKLPVVDDKG 212 (503)
T ss_pred hhcccc---cccccccccHHHHHHHHHhhhcCCcceeccCC
Confidence 999976 488888999999999988 5677898887643
No 187
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=97.98 E-value=6.7e-05 Score=76.47 Aligned_cols=108 Identities=18% Similarity=0.269 Sum_probs=85.8
Q ss_pred cchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCc
Q 013939 6 IYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCL 85 (433)
Q Consensus 6 ~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l 85 (433)
..-+|.|+|.-..++..++.+++.++.++.+....-+++|+|..+ -+.++|++-.+|+++++.+.+++
T Consensus 198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~------------~DnIiGvlh~r~llr~l~e~~~~ 265 (423)
T COG4536 198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDD------------LDNIIGVLHVRDLLRLLNEKNEF 265 (423)
T ss_pred ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCC------------hhHhhhhhhHHHHHHHhhccCcc
Confidence 455799999877899999999999999999999999999999865 26799999999999999876433
Q ss_pred chHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHHcCCCeEEeeec
Q 013939 86 EDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKS 135 (433)
Q Consensus 86 ~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~~~ 135 (433)
. +..+..+.. ++|-++.+++|.+-+..|.++-.|+.++.|
T Consensus 266 ~------k~d~~~~a~----epyFVPe~Tpl~~QL~~F~~~k~hialVVD 305 (423)
T COG4536 266 T------KEDILRAAD----EPYFVPEGTPLSDQLVAFQRNKKHIALVVD 305 (423)
T ss_pred c------HhHHHHHhc----CCeecCCCCcHHHHHHHHHHhcceEEEEEe
Confidence 2 111222222 379999999999999999966566655433
No 188
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.93 E-value=5.7e-05 Score=79.75 Aligned_cols=118 Identities=14% Similarity=0.196 Sum_probs=97.7
Q ss_pred chhHhhhhcCCCCeEEEcCCccHHHHHHHHHh-----cCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhc
Q 013939 7 YHVVGDLTVGKPELAEFYETETVEAAIKAIGE-----STECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAK 81 (433)
Q Consensus 7 ~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e-----~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~ 81 (433)
..+++-+|. .+.++++++.|+.+|+..+.+ ..+..+-|+|.. ++++|+++.++++.. +
T Consensus 131 e~taG~~Mt--~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-------------~~L~Gvvsl~~Ll~a--~ 193 (451)
T COG2239 131 EDTAGRIMT--TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-------------GKLLGVVSLRDLLTA--E 193 (451)
T ss_pred hhhhhccce--eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-------------cceEEEeeHHHHhcC--C
Confidence 345566653 789999999999999999994 346778888864 799999999999742 2
Q ss_pred CCCcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhcccccccccccc
Q 013939 82 SDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDAS 160 (433)
Q Consensus 82 ~~~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 160 (433)
+ +++++++|... ++.+.+++...++..+|. .+.-.+||+++++
T Consensus 194 ~----------~~~i~~im~~~---~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~----------------------- 237 (451)
T COG2239 194 P----------DELLKDLMEDD---VVSVLADDDQEEVARLFEKYDLLAVPVVDEDN----------------------- 237 (451)
T ss_pred c----------HhHHHHHhccc---ceeecccCCHHHHHHHHHHhCCeecceECCCC-----------------------
Confidence 2 47899999965 999999999999999999 7888899987643
Q ss_pred CccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 161 NSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+++|+||+.|++.-+.+
T Consensus 238 -----------------------~LiG~itiDDiidvi~e 254 (451)
T COG2239 238 -----------------------RLIGIITIDDIIDVIEE 254 (451)
T ss_pred -----------------------ceeeeeeHHHHHHHHHH
Confidence 56999999999998854
No 189
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.88 E-value=3.4e-05 Score=65.58 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=46.1
Q ss_pred CCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 357 RGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 357 ~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
.|..++.++.+++++.++++.|.+++.+.+||+|++ |+++||||..||.+
T Consensus 63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~~l~Givt~~dl~~ 112 (113)
T cd04597 63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDD--GTPAGIITLLDLAE 112 (113)
T ss_pred hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCC--CeEEEEEEHHHhhc
Confidence 356789999999999999999999999999999987 89999999999864
No 190
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.80 E-value=0.00027 Score=72.99 Aligned_cols=106 Identities=15% Similarity=0.236 Sum_probs=86.6
Q ss_pred EEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchhcc
Q 013939 21 AEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVI 100 (433)
Q Consensus 21 Vtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~Im 100 (433)
+...++.+..++++.|..+++.++.|+|.+ +++.|.++..++..|+... ..+.+.|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~~~~~~~~~-----------~~~~~~~ 308 (363)
T TIGR01186 253 ITKTADKGPRSALQLMRDERVDSLYVVDRQ-------------NKLVGVVDVESIKQARKKA-----------QGLQDVL 308 (363)
T ss_pred eeecCCCCHHHHHHHHHhcCCceEEEEcCC-------------CCEEEEEeHHHHHHHhhcC-----------Cchhhhh
Confidence 456678899999999999999999999964 7999999999998876432 3466666
Q ss_pred ccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCCCCCCCc
Q 013939 101 VPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSST 179 (433)
Q Consensus 101 ~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (433)
... +.++.++++|.+++..|. .+.. +||+++++
T Consensus 309 ~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~------------------------------------------ 342 (363)
T TIGR01186 309 IDD---IYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQ------------------------------------------ 342 (363)
T ss_pred ccC---CceECCCCcHHHHHHHHHhCCCC-EEEECCCC------------------------------------------
Confidence 543 788999999999999999 5655 98876543
Q ss_pred CCCCCeEEEeeHHHHHHHHHH
Q 013939 180 TSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 180 ~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+.+|+||..++++.+..
T Consensus 343 ----~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 343 ----RLVGIVTRGSLVDALYD 359 (363)
T ss_pred ----cEEEEEEHHHHHHHHHh
Confidence 46899999999998864
No 191
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.76 E-value=0.0003 Score=73.48 Aligned_cols=106 Identities=16% Similarity=0.105 Sum_probs=85.3
Q ss_pred EEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchhccc
Q 013939 22 EFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIV 101 (433)
Q Consensus 22 tv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~Im~ 101 (433)
...++.+..+|+..|.+++..++.|+|.. ++++|+++..|+..+... +.++.+.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~ 344 (400)
T PRK10070 289 RKTPGFGPRSALKLLQDEDREYGYVIERG-------------NKFVGAVSIDSLKTALTQ-----------QQGLDAALI 344 (400)
T ss_pred ccCCCCCHHHHHHHHHhcCCceEEEEcCC-------------CcEEEEEeHHHHHhhhhc-----------CCchhhhhc
Confidence 44577789999999999999999999974 799999999999876432 234666665
Q ss_pred cCCCccEEeCCCCcHHHHHHHHHcCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCCCCCCCcCC
Q 013939 102 PNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTTS 181 (433)
Q Consensus 102 ~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (433)
.. +.++.++++|.+++..|...-..+||+++++
T Consensus 345 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------------------------------------------- 377 (400)
T PRK10070 345 DA---PLAVDAQTPLSELLSHVGQAPCAVPVVDEDQ-------------------------------------------- 377 (400)
T ss_pred cC---CceeCCCCCHHHHHHHHHhCCCcEEEECCCC--------------------------------------------
Confidence 43 7899999999999999995444488876433
Q ss_pred CCCeEEEeeHHHHHHHHHH
Q 013939 182 VRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 182 ~~~~~~iiTq~Dvi~~l~~ 200 (433)
+.+|+||..++++.+.+
T Consensus 378 --~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 378 --QYVGIISKGMLLRALDR 394 (400)
T ss_pred --cEEEEEEHHHHHHHHHh
Confidence 56899999999999864
No 192
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.66 E-value=7.8e-05 Score=63.38 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=47.4
Q ss_pred CcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhh
Q 013939 212 SISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWK 270 (433)
Q Consensus 212 tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~ 270 (433)
++++ +|.+++.++.+++++.+|++.|.+ ++..+||+|+ +| +++|+||.+||..
T Consensus 59 ~v~d--im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--~~--~l~Givt~~dl~~ 112 (113)
T cd04597 59 RVRD--VINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD--DG--TPAGIITLLDLAE 112 (113)
T ss_pred hHHH--hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC--CC--eEEEEEEHHHhhc
Confidence 4554 688889999999999999999998 8999999998 78 9999999999864
No 193
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.54 E-value=0.00032 Score=48.14 Aligned_cols=47 Identities=28% Similarity=0.402 Sum_probs=42.5
Q ss_pred eEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHh
Q 013939 20 LAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFL 79 (433)
Q Consensus 20 lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l 79 (433)
.+++++++++.++++.|.++++..+||++.+ ++++|+++..|+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-------------GRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC-------------CeEEEEEEHHHHHHhh
Confidence 5788999999999999999999999999863 6899999999998764
No 194
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.00025 Score=76.26 Aligned_cols=159 Identities=13% Similarity=0.085 Sum_probs=100.3
Q ss_pred cCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCc-ceEEeecchhhhhhcchhHHHHHHhhccchhhhhcccc
Q 013939 217 GVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQ-YKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVED 294 (433)
Q Consensus 217 ~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~-~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~ 294 (433)
++|+++|+++..-+.+...++.+.. ++.+.||||+++.+. .++.|+|=-+-|..+. ++ +.|..--.
T Consensus 586 ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL-~~----------~~f~~~~~- 653 (762)
T KOG0474|consen 586 EVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLL-KK----------RVFVEESR- 653 (762)
T ss_pred hhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHH-Hh----------hhhhccCc-
Confidence 3799999999999999999999999 999999999853321 1788888777766554 11 11221000
Q ss_pred CCCCCCCCCcccccccccccccCCCCCCCCccccc-cCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHH
Q 013939 295 NVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCS-RSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAA 373 (433)
Q Consensus 295 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~ 373 (433)
.+..+. +++...-+. - ++++.+ .+++.+.++++ .-.... ..|...|+|+.++++|..
T Consensus 654 --~~~~~~---~~~~~~~~d--~------a~r~~~i~dv~lt~~e~~--~yvDl~-------p~~n~sPytV~~~mSl~k 711 (762)
T KOG0474|consen 654 --STFDLP---VRRKFTFRD--F------AKREPSIEDVHLTSEEME--MYVDLH-------PFMNPSPYTVPETMSLAK 711 (762)
T ss_pred --cccCcc---hhhcCCHHH--h------hhcCCchhhhhcchHhHh--hccccc-------cccCCCCcccCcccchHH
Confidence 001100 000000000 0 000000 12222222111 000000 236889999999999999
Q ss_pred HHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHH
Q 013939 374 VMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVT 411 (433)
Q Consensus 374 v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~ 411 (433)
+..+..+-+.+|+.||+.. ++.+||+|+.|+.+.-.
T Consensus 712 ~~~lFR~lGLRhLlVv~~~--~~~~gilTR~D~~~~~~ 747 (762)
T KOG0474|consen 712 AFILFRQLGLRHLLVVPKT--NRVVGILTRKDLARYRI 747 (762)
T ss_pred HHHHHHHhcceeEEEecCC--CceeEEEehhhhhhHHH
Confidence 9999999999999999998 88899999999986653
No 195
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.00055 Score=69.93 Aligned_cols=129 Identities=16% Similarity=0.207 Sum_probs=102.3
Q ss_pred CCCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhcc
Q 013939 208 LPLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLS 284 (433)
Q Consensus 208 l~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~ 284 (433)
+...||+| +|.+ ++..+..+.+..+.++.+.. .++++|+-.+ +- +.++|++-.+|+.++.++.
T Consensus 197 Le~~tV~D--IMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~--~~-DnIiGvlh~r~llr~l~e~--------- 262 (423)
T COG4536 197 LENLTVSD--IMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRD--DL-DNIIGVLHVRDLLRLLNEK--------- 262 (423)
T ss_pred cccceeee--eeccccceeeecCCCCHHHHHHHHhhCCCCceeeecC--Ch-hHhhhhhhHHHHHHHhhcc---------
Confidence 34556666 5764 69999999999999999999 8999999986 22 3899999999998764210
Q ss_pred chhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeE
Q 013939 285 AGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLT 364 (433)
Q Consensus 285 ~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 364 (433)
.+| .+ +++ ...-.+|..
T Consensus 263 -~~~-------------~k-----------------------------------~d~--------------~~~a~epyF 279 (423)
T COG4536 263 -NEF-------------TK-----------------------------------EDI--------------LRAADEPYF 279 (423)
T ss_pred -Ccc-------------cH-----------------------------------hHH--------------HHHhcCCee
Confidence 000 00 000 112458999
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 365 CKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 365 ~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
+...++|..-+..+.+++-|-=-|||+= |.+.|+||+.|||..+.....
T Consensus 280 VPe~Tpl~~QL~~F~~~k~hialVVDEY--G~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 280 VPEGTPLSDQLVAFQRNKKHIALVVDEY--GDIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred cCCCCcHHHHHHHHHHhcceEEEEEecc--CcEEeeeeHHHHHHHHhcccc
Confidence 9999999999999999999999999998 999999999999999998766
No 196
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.0014 Score=63.36 Aligned_cols=164 Identities=15% Similarity=0.175 Sum_probs=114.4
Q ss_pred hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch
Q 013939 8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED 87 (433)
Q Consensus 8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~ 87 (433)
-+|+|+|+-....++++.+.++.+-+..+.+..-++-||...+ .+.+.||+-..|++.|+..+...-
T Consensus 67 l~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed------------kD~v~GIL~AKDLL~~~~~~~~~F- 133 (293)
T COG4535 67 LRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED------------KDHVEGILLAKDLLPFMRSDAEPF- 133 (293)
T ss_pred hhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCC------------chhhhhhhhHHHHHHHhcCCcccc-
Confidence 4689999877889999999999999999999999999999865 478999999999999987653322
Q ss_pred HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccc
Q 013939 88 QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNN 166 (433)
Q Consensus 88 ~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 166 (433)
.+.++.- |.+.|++.-.|.-.++-|. +..|=..|+++ +
T Consensus 134 -------~i~~lLR----Pav~VPESKrvd~lLkeFR~~RnHMAIViDE--f---------------------------- 172 (293)
T COG4535 134 -------DIKELLR----PAVVVPESKRVDRLLKEFRSQRNHMAIVIDE--F---------------------------- 172 (293)
T ss_pred -------cHHHhcc----cceecccchhHHHHHHHHHhhcCceEEEEec--c----------------------------
Confidence 2444443 4788888889999999998 55554444432 2
Q ss_pred cccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHcc-CCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhcccCCC
Q 013939 167 LIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCL-GALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPGDPS 244 (433)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~-~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~~is 244 (433)
|.+-|+||-+||+.-+.+-+ +++..-....|+. ..+.-++|.+-+++.+-=+.+..+++
T Consensus 173 ----------------GgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~---ls~~~~~VrALT~IedFNe~F~t~Fs 232 (293)
T COG4535 173 ----------------GGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQ---LSRHTWRVRALTEIEDFNEAFGTHFS 232 (293)
T ss_pred ----------------CCeeeeEEHHHHHHHHhcccccccchhhhhhhHh---hcCCceEEEecccHHHHHHHhcCCCC
Confidence 23458999999999886432 2222111222332 34455667766666554444443554
No 197
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.00099 Score=64.35 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=94.5
Q ss_pred CcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhcccc
Q 013939 218 VIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVED 294 (433)
Q Consensus 218 im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~ 294 (433)
+|- ...+++..+.++.+++..|.+ .+|+.||+.+. .. .+.||+-+.||++....
T Consensus 72 iMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed-kD--~v~GIL~AKDLL~~~~~-------------------- 128 (293)
T COG4535 72 IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED-KD--HVEGILLAKDLLPFMRS-------------------- 128 (293)
T ss_pred hcccHHHheeccccCCHHHHHHHHHHhccccCCcccCC-ch--hhhhhhhHHHHHHHhcC--------------------
Confidence 455 479999999999999999999 99999999872 33 89999999999875300
Q ss_pred CCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHH
Q 013939 295 NVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAV 374 (433)
Q Consensus 295 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v 374 (433)
+ ...|+ + ...-+|.+.+...-.|...
T Consensus 129 -------------------~---------~~~F~---i-----------------------~~lLRPav~VPESKrvd~l 154 (293)
T COG4535 129 -------------------D---------AEPFD---I-----------------------KELLRPAVVVPESKRVDRL 154 (293)
T ss_pred -------------------C---------ccccc---H-----------------------HHhcccceecccchhHHHH
Confidence 0 00010 0 1135688888888899999
Q ss_pred HHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 375 MAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 375 ~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
+.....+|-|---|||+= |-.-|.||..|||..+...
T Consensus 155 LkeFR~~RnHMAIViDEf--GgVsGLVTIEDiLEqIVGd 191 (293)
T COG4535 155 LKEFRSQRNHMAIVIDEF--GGVSGLVTIEDILEQIVGD 191 (293)
T ss_pred HHHHHhhcCceEEEEecc--CCeeeeEEHHHHHHHHhcc
Confidence 999999999999999998 9999999999999999864
No 198
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.0047 Score=66.80 Aligned_cols=118 Identities=19% Similarity=0.285 Sum_probs=84.1
Q ss_pred ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcC--
Q 013939 5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKS-- 82 (433)
Q Consensus 5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~-- 82 (433)
|.+-+++|++. ++|++++.-+.|...++.|...+=.+-||+|..... -.+++.|+|=-..++..|-+.
T Consensus 579 mr~L~a~ev~~--~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~--------~~~~l~GlILRshl~vlL~~~~f 648 (762)
T KOG0474|consen 579 MRNLTAGEVMS--KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSN--------EAGRLHGLILRSHLLVLLKKRVF 648 (762)
T ss_pred hhhhhHhhhcc--CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCc--------cchhhhHHHHHHHHHHHHHhhhh
Confidence 44557888885 589999999999999999999999999999965310 015788888888887765421
Q ss_pred --C-----Ccc--------hHHhh---------------cCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEE
Q 013939 83 --D-----CLE--------DQDKA---------------MKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLL 131 (433)
Q Consensus 83 --~-----~l~--------~~~~~---------------l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~ 131 (433)
+ ... +..+. +-.....+|.. ..++|.+++|+..+..+|. =|.||++
T Consensus 649 ~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~---sPytV~~~mSl~k~~~lFR~lGLRhLl 725 (762)
T KOG0474|consen 649 VEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNP---SPYTVPETMSLAKAFILFRQLGLRHLL 725 (762)
T ss_pred hccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCC---CCcccCcccchHHHHHHHHHhcceeEE
Confidence 0 000 00000 01223334443 3899999999999999999 6999999
Q ss_pred eeec
Q 013939 132 VPKS 135 (433)
Q Consensus 132 V~~~ 135 (433)
|+..
T Consensus 726 Vv~~ 729 (762)
T KOG0474|consen 726 VVPK 729 (762)
T ss_pred EecC
Confidence 8754
No 199
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.49 E-value=0.016 Score=62.77 Aligned_cols=135 Identities=17% Similarity=0.193 Sum_probs=88.3
Q ss_pred CeEEEcCC-CcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccc--cCCC
Q 013939 222 NYSSIEAS-VPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVE--DNVT 297 (433)
Q Consensus 222 ~vitv~~~-~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~--~~~~ 297 (433)
...+++.+ +++.|...+|.+ ++++.|||=+++.. .++|.+..+|+.--. ..+ -+.-+|+.--. .+++
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq--~lvGfv~rr~l~~~i-~~a------r~~q~~~~~~~~~f~~~ 627 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQ--RLVGFVLRRNLFLAI-LNA------RKIQSFIVTTSIYFNDP 627 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEccccc--eeEEEEchHHHHHHH-hhh------ccccccceecccccCCC
Confidence 35666655 899999999999 99999999653344 999999999987432 100 01111111000 0000
Q ss_pred CCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHH
Q 013939 298 PRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQ 377 (433)
Q Consensus 298 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~ 377 (433)
..++. .+ . . ..++ + + ..+...|+|++..++.+.++++
T Consensus 628 ~~~~~----------~~------~--~-----~~~~-------l-----------k--~il~~tp~tv~d~tp~~~v~~~ 664 (696)
T KOG0475|consen 628 SPSAV----------AG------I--P-----SRLD-------L-----------K--DILDMTPFTVTDLTPMETVVDL 664 (696)
T ss_pred Ccccc----------CC------C--C-----CCcC-------c-----------e--eeccCCcccccccCcHHHHHHH
Confidence 00000 00 0 0 0000 0 1 2256789999999999999999
Q ss_pred HHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHH
Q 013939 378 MLSHRATHVWVTEDESDDVLVGVVGYADILVAVT 411 (433)
Q Consensus 378 m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~ 411 (433)
.-+-+++.+-|..+ |++.|+||..|+|+...
T Consensus 665 F~~lg~~~~~v~~~---G~l~Giitkkd~l~~~r 695 (696)
T KOG0475|consen 665 FRKLGLRQILVTKN---GILLGIITKKDCLRHTR 695 (696)
T ss_pred HHhhCceEEEEccC---CeeEeeeehHHHHHhhc
Confidence 99999999998666 99999999999998753
No 200
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.74 E-value=0.1 Score=56.80 Aligned_cols=107 Identities=18% Similarity=0.254 Sum_probs=76.8
Q ss_pred hcCCCCeEEEcCC-ccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhc--C--CCc---
Q 013939 14 TVGKPELAEFYET-ETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAK--S--DCL--- 85 (433)
Q Consensus 14 ~~~k~~lVtv~~~-~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~--~--~~l--- 85 (433)
++..+.|+.++.+ .|++|...+|.+...+..||+-++. .++++|+++-+|+...+.. + +..
T Consensus 552 ~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~-----------sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~ 620 (696)
T KOG0475|consen 552 CRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSED-----------SQRLVGFVLRRNLFLAILNARKIQSFIVTT 620 (696)
T ss_pred hcCchhheeccccceeHHHHHHHHhhcccCCceEEEccc-----------cceeEEEEchHHHHHHHhhhccccccceec
Confidence 3444578888888 9999999999999999999986543 4799999999999886652 1 110
Q ss_pred --c--hH-Hhhc---CC--cchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeee
Q 013939 86 --E--DQ-DKAM---KT--PVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPK 134 (433)
Q Consensus 86 --~--~~-~~~l---~~--pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~ 134 (433)
. ++ +.+. .. ..+++|..+ ++++.-.++..-++.+|. =|++...|.+
T Consensus 621 ~~~f~~~~~~~~~~~~~~~~lk~il~~t---p~tv~d~tp~~~v~~~F~~lg~~~~~v~~ 677 (696)
T KOG0475|consen 621 SIYFNDPSPSAVAGIPSRLDLKDILDMT---PFTVTDLTPMETVVDLFRKLGLRQILVTK 677 (696)
T ss_pred ccccCCCCccccCCCCCCcCceeeccCC---cccccccCcHHHHHHHHHhhCceEEEEcc
Confidence 0 00 0010 11 245666655 788888999999999988 4888887754
No 201
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.56 E-value=0.12 Score=52.44 Aligned_cols=51 Identities=20% Similarity=0.380 Sum_probs=40.6
Q ss_pred CCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 360 STPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 360 ~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
.++.++.+++++.+.+..+... -..++|||++ ++++|+|++..++.+++..
T Consensus 335 ~~~~~v~~d~~~~~~~~~~~~~-~~p~aVvde~--~r~vG~i~~~~vl~aL~~~ 385 (386)
T COG4175 335 DDVLTVDADTPLSEILARIRQA-PCPVAVVDED--GRYVGIISRGELLEALARI 385 (386)
T ss_pred ccccccCccchHHHHHHHHhcC-CCceeEEcCC--CcEEEEecHHHHHHHHhcC
Confidence 3556777888888877655544 4568999998 9999999999999999764
No 202
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=93.67 E-value=0.13 Score=53.64 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=43.0
Q ss_pred CCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 359 RSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 359 ~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
.....+++++++|.+++..+.++. +-++|+|+ |+++|+|+..+||.++..
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~---~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 332 EAAPTVINPDTLMRDVLAARHRTG-GAILLVEN---GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred cccCcccCCCCcHHHHHHHHhcCC-CCeEEeeC---CeEEEEEeHHHHHHHHhc
Confidence 346779999999999999888766 45899986 899999999999999864
No 203
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=91.13 E-value=1.3 Score=49.46 Aligned_cols=51 Identities=25% Similarity=0.284 Sum_probs=46.6
Q ss_pred CCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 359 RSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 359 ~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
...|+-.-+.+||..+=.+.---++||.||++- |||+|||++.++=+++..
T Consensus 809 DpaPfQLve~TSL~K~HtLFSLLgL~~AYVT~~---GrLvGVValkELRkAie~ 859 (931)
T KOG0476|consen 809 DPAPFQLVEGTSLYKVHTLFSLLGLNHAYVTSC---GRLVGVVALKELRKAIEN 859 (931)
T ss_pred CCCceeeeccchHHHHHHHHHHhccchhhhccc---CcEEEEEEHHHHHHHHHh
Confidence 356788889999999999998899999999998 999999999999999976
No 204
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=84.24 E-value=1.6 Score=43.37 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939 370 SLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVA 409 (433)
Q Consensus 370 sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~ 409 (433)
...+++..++..+..-+||||++ |+++|+||+.||+..
T Consensus 271 ~~~~~ls~~~~~~~~~~~Vvd~~--g~~~G~vt~~~l~~~ 308 (309)
T COG1125 271 VDRDALSDFLARGRSVLPVVDED--GRPLGTVTRADLLDE 308 (309)
T ss_pred hhHHHHHHHHhcCCceeEEECCC--CcEeeEEEHHHHhhh
Confidence 33448889999999999999998 999999999999864
No 205
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=80.32 E-value=2 Score=44.78 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=40.7
Q ss_pred CCCeEEEcCCCcHHHHHHhcccCCCeeEEecCCCCCcceEEeecchhhhhhc
Q 013939 220 NPNYSSIEASVPAIEATLKAPGDPSAIAVLEPTSEDQYKIIGEISASKLWKC 271 (433)
Q Consensus 220 ~~~vitv~~~~~v~ea~~~M~~~isavpVVd~~~~g~~klvGiIS~~DL~~~ 271 (433)
..++.++++++++.+++..+.+.-..+||+| +| +++|+|+..+++..
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~--~~~g~~~~~~~~~~ 378 (382)
T TIGR03415 332 EAAPTVINPDTLMRDVLAARHRTGGAILLVE---NG--RIVGVIGDDNIYHA 378 (382)
T ss_pred cccCcccCCCCcHHHHHHHHhcCCCCeEEee---CC--eEEEEEeHHHHHHH
Confidence 3468899999999999999998667799998 48 99999999999764
No 206
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=78.10 E-value=2.4 Score=43.46 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=43.5
Q ss_pred CCCeEEEcCCCcHHHHHHhcccCCCeeEEecCCCCCcceEEeecchhhhhhcc
Q 013939 220 NPNYSSIEASVPAIEATLKAPGDPSAIAVLEPTSEDQYKIIGEISASKLWKCD 272 (433)
Q Consensus 220 ~~~vitv~~~~~v~ea~~~M~~~isavpVVd~~~~g~~klvGiIS~~DL~~~~ 272 (433)
...+.++.+++++.+.+..+.+.-..+||||+ +| +++|+|+.+.+..+.
T Consensus 334 ~~~~~~v~~d~~~~~~~~~~~~~~~p~aVvde--~~--r~vG~i~~~~vl~aL 382 (386)
T COG4175 334 IDDVLTVDADTPLSEILARIRQAPCPVAVVDE--DG--RYVGIISRGELLEAL 382 (386)
T ss_pred cccccccCccchHHHHHHHHhcCCCceeEEcC--CC--cEEEEecHHHHHHHH
Confidence 34678999999999999999988889999998 88 999999999998764
No 207
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=77.03 E-value=3.4 Score=46.40 Aligned_cols=56 Identities=7% Similarity=0.036 Sum_probs=50.9
Q ss_pred CCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 357 RGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 357 ~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
.|.+++..++.++|..+.-+.+..+.++-+|+||+.++.-|+|.|.++-+.+.+-+
T Consensus 593 iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 593 IMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred eccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 47899999999999999998877777999999999877899999999999998876
No 208
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=66.46 E-value=8.8 Score=38.36 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=35.5
Q ss_pred CCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHH
Q 013939 25 ETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAF 78 (433)
Q Consensus 25 ~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~ 78 (433)
....-.+|+..+...++..+||+|++ ++++|.++..||+.+
T Consensus 268 ~~~~~~~~ls~~~~~~~~~~~Vvd~~-------------g~~~G~vt~~~l~~~ 308 (309)
T COG1125 268 EGFVDRDALSDFLARGRSVLPVVDED-------------GRPLGTVTRADLLDE 308 (309)
T ss_pred cchhhHHHHHHHHhcCCceeEEECCC-------------CcEeeEEEHHHHhhh
Confidence 34555679999999999999999974 899999999999875
No 209
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=62.20 E-value=11 Score=40.87 Aligned_cols=109 Identities=19% Similarity=0.305 Sum_probs=76.3
Q ss_pred cchhHhhhhcCCCCeEEEcCCccHH-HHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC
Q 013939 6 IYHVVGDLTVGKPELAEFYETETVE-AAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC 84 (433)
Q Consensus 6 ~~~~v~DL~~~k~~lVtv~~~~tV~-eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~ 84 (433)
.-..++|+|..--.+..++.+..+. +......+.+.+++||.+.+. ...+|.+=....++|+.....
T Consensus 202 ~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~------------~~~i~~~L~~~~~~~~~~~~~ 269 (498)
T KOG2118|consen 202 TEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEP------------KNKIGGLLVMNLLRLLQVEVP 269 (498)
T ss_pred HHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcc------------cchhhHHHHhhhhhhhccccc
Confidence 3446777775445778888888887 777788899999999998753 334443333344445433211
Q ss_pred cchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHHcCCCeEEeeec
Q 013939 85 LEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKS 135 (433)
Q Consensus 85 l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~~~ 135 (433)
+. ..+++..+-.. +.-+++++++.+.++.|.+|-.|.+|+..
T Consensus 270 ~~------~~~v~~~~~~~---l~~vp~~~~~~~~l~~~~~~~~H~~~v~~ 311 (498)
T KOG2118|consen 270 LE------PLPVSESALLR---LPLVPENMPLLDLLNEFQKGKSHMAVVRN 311 (498)
T ss_pred cc------cccchhhhccc---cccCCCcccHHHHHHHHhhhhceeEEEec
Confidence 11 26777777754 88899999999999999988777777654
No 210
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=52.80 E-value=25 Score=28.25 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=27.9
Q ss_pred CCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCCCcCCCC
Q 013939 383 ATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTPAN 421 (433)
Q Consensus 383 vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~~~~~~~ 421 (433)
...|-|||++ |..+|++++.+-++..-...-.|+.-+
T Consensus 12 ~~~VrlI~~~--g~~lGv~~~~eAl~~A~~~~lDLV~v~ 48 (76)
T PF05198_consen 12 APEVRLIDED--GEQLGVMSLREALRLAKEKGLDLVEVS 48 (76)
T ss_dssp -SEEEEE-TT--S-EEEEEEHHHHHHHHHHTT-EEEEEE
T ss_pred CCEEEEECCC--CcEeceEEHHHHHHHHHHcCCcEEEEc
Confidence 5778899998 999999999999999888777666443
No 211
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=42.83 E-value=12 Score=34.99 Aligned_cols=44 Identities=20% Similarity=0.518 Sum_probs=32.8
Q ss_pred EEEEEeCCCCCeEEEEEeHHHHHHHHHhC-----CCCcCCCCCCcccccccc
Q 013939 385 HVWVTEDESDDVLVGVVGYADILVAVTKQ-----PAALTPANRTYEGFATEI 431 (433)
Q Consensus 385 rl~VVD~~~~~~lvGIVs~~DIL~~i~~~-----~~~~~~~~~~~~~~~~~~ 431 (433)
.-|-++++ ++++|+|.++-=|.....+ .++..|+.|- -|||||+
T Consensus 70 ~y~~v~~d--~~ivG~i~lRh~Ln~~ll~~gGHIGY~VrPseR~-KGYA~em 118 (174)
T COG3981 70 TYWAVDED--GQIVGFINLRHQLNDFLLEEGGHIGYSVRPSERR-KGYAKEM 118 (174)
T ss_pred eEEEEecC--CcEEEEEEeeeecchHHHhcCCcccceeChhhhc-cCHHHHH
Confidence 45777777 9999999988665555443 6677787775 5999986
No 212
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=34.18 E-value=42 Score=31.39 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=31.5
Q ss_pred CCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCCCcCCCCC
Q 013939 382 RATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTPANR 422 (433)
Q Consensus 382 ~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~~~~~~~~ 422 (433)
++..|-|||++ |..+|++++.+.|+..-.....|+.-++
T Consensus 18 ~~~~Vrli~~d--G~~lgv~~~~eAl~~A~~~~lDLV~v~~ 56 (177)
T PRK00028 18 RAREVRLIGDD--GEQLGIVSTREALELAEEAGLDLVEISP 56 (177)
T ss_pred CCCEEEEECCC--CcCCCceeHHHHHHHHHHcCCCEEEECC
Confidence 35678899987 8999999999999988888777765443
No 213
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=30.41 E-value=48 Score=30.64 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=31.6
Q ss_pred CCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCCCcCCCCC
Q 013939 382 RATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTPANR 422 (433)
Q Consensus 382 ~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~~~~~~~~ 422 (433)
+...|-|||++ |...|++++.+.|+..-.....|+.-++
T Consensus 6 ~~~~Vrli~~d--G~~lgv~~~~eAl~~A~~~~lDLVev~~ 44 (165)
T TIGR00168 6 RFNEVRLIDEN--GEQLGIVSREEALEIAEEAGLDLVLISP 44 (165)
T ss_pred CCCEEEEECCC--CcCCCcccHHHHHHHHHHcCCcEEEECC
Confidence 35678888887 8999999999999998888877766554
No 214
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=24.65 E-value=1e+02 Score=24.90 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHH
Q 013939 372 AAVMAQMLSHRATHVWVTEDESDDVLVGVVGYA 404 (433)
Q Consensus 372 ~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~ 404 (433)
.+.+..+++..-+.+||.+++ ++++|.+.+.
T Consensus 32 ~~~~~~~~~~~~~~~~v~~~~--~~ivG~~~~~ 62 (117)
T PF13673_consen 32 PEDLEEYLEEGSHTIFVAEEG--GEIVGFAWLE 62 (117)
T ss_dssp HHHHHHHHCTCCCEEEEEEET--TEEEEEEEEE
T ss_pred HHHHHHHHHhcCCEEEEEEEC--CEEEEEEEEc
Confidence 445567777777999999998 9999999853
No 215
>CHL00199 infC translation initiation factor 3; Provisional
Probab=24.17 E-value=75 Score=29.97 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=30.6
Q ss_pred CCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCCCcCCCCC
Q 013939 383 ATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTPANR 422 (433)
Q Consensus 383 vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~~~~~~~~ 422 (433)
...|-|||++ |..+||++..+-|+.-......|+.-++
T Consensus 24 ~~~VrlI~~~--G~~lGv~~~~eAl~~A~~~~lDLVeVs~ 61 (182)
T CHL00199 24 FPKVRVIDDS--GEQLGIFTSEQAIQLAANQGLDLVLVSE 61 (182)
T ss_pred CCEEEEECCC--CcCCCceeHHHHHHHHHHcCCCEEEECC
Confidence 5678888888 9999999999999888887777765544
Done!